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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_018108 Taylorella equigenitalis ATCC 35865, complete sequence 2 crisprs cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh 0 5 5 1

Results visualization

1. NC_018108
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018108_1 225724-227879 TypeI NA
32 spacers
cas3,cas2,cas1,cas4,cas7,cas8c,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018108_2 1217413-1217685 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_018108_1 1.24|227283|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227283-227316 34 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 288796-288829 7 0.794
NC_018108_1 1.27|227482|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227482-227515 34 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 288796-288829 7 0.794
NC_018108_1 1.24|227283|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227283-227316 34 NZ_CP012100 Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence 342046-342079 8 0.765
NC_018108_1 1.24|227283|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227283-227316 34 NZ_CP029455 Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence 153352-153385 8 0.765
NC_018108_1 1.27|227482|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227482-227515 34 NZ_CP012100 Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence 342046-342079 8 0.765
NC_018108_1 1.27|227482|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227482-227515 34 NZ_CP029455 Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence 153352-153385 8 0.765
NC_018108_1 1.30|227681|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 227681-227714 34 NZ_CP026693 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence 97774-97807 8 0.765
NC_018108_1 1.4|225955|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 225955-225988 34 MF403008 Agrobacterium phage Atu_ph07, complete genome 266155-266188 9 0.735
NC_018108_1 1.8|226218|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR 226218-226251 34 MF403008 Agrobacterium phage Atu_ph07, complete genome 266155-266188 9 0.735

1. spacer 1.24|227283|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.794

atattattttcaactaacaagtttt---taatctcag	CRISPR spacer
atattcatttcaactaacaagttttctataaatt---	Protospacer
*****  ******************   *** .*   

2. spacer 1.27|227482|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.794

atattattttcaactaacaagtttt---taatctcag	CRISPR spacer
atattcatttcaactaacaagttttctataaatt---	Protospacer
*****  ******************   *** .*   

3. spacer 1.24|227283|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagttttt----aatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatt----	Protospacer
*****  ******************.    ***.    

4. spacer 1.24|227283|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagtttttaatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatg	Protospacer
*****  ******************. **    *

5. spacer 1.27|227482|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagttttt----aatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatt----	Protospacer
*****  ******************.    ***.    

6. spacer 1.27|227482|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagtttttaatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatg	Protospacer
*****  ******************. **    *

7. spacer 1.30|227681|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026693 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence) position: , mismatch: 8, identity: 0.765

gagaattaatcagacagcccgaat---ctattcaagc	CRISPR spacer
aagaattaatcaaacagccagaatcggctatttt---	Protospacer
.***********.****** ****   *****.    

8. spacer 1.4|225955|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.735

ccaattagtgctttttctattcgatgttttttac	CRISPR spacer
ccaattaatgatttttctattcgatcacctgtga	Protospacer
*******.** **************  ..* *. 

9. spacer 1.8|226218|34|NC_018108|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.735

ccaattagtgctttttctattcgatgttttttac	CRISPR spacer
ccaattaatgatttttctattcgatcacctgtga	Protospacer
*******.** **************  ..* *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 251257 : 259118 11 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_2 265816 : 273393 9 uncultured_marine_virus(16.67%) NA NA
DBSCAN-SWA_3 334281 : 345352 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_4 1018709 : 1025555 7 uncultured_Mediterranean_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1132033 : 1143925 9 Bodo_saltans_virus(16.67%) tRNA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_018108.1|WP_013521353.1|1243509_1243950_+|hypothetical-protein 1243509_1243950_+ 146 aa aa 86 NA NA No NA