CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018142	Pseudopropionibacterium propionicum F0230a, complete sequence	10 crisprs	csa3,csm3gr7,cas10,cas6,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,WYL,PD-DExK,cas7	2	4	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_018142_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_1

216212-216306

Orphan

Consensus_repeat	Method
GCGGCCCTGCGTGGTGTCAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_1

>merge|NC_018142|1|216212-216306|CRISPRCasFinder
GCGGCCCTGCGTGGTGTCAGGGGGTCGGTCTGTGTGTTCCCGGGAGGTGCTGCCGGGGCCGGTTCCCGGGAAGCGGCCCTGCGTGGCGTCAGGGG

>NC_018142|1|1|216212-216306|CRISPRCasFinder
GCGGCCCTGCGTGGTGTCAGGGG	GTCGGTCTGTGTGTTCCCGGGAGGTGCTGCCGGGGCCGGTTCCCGGGAA
GCGGCCCTGCGTGGCGTCAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_073969993.1\|227495_227897_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_123823941.1\|226645_227167_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845350.1\|212124_213501_-\|type-VII-secretion-protein-EccB	unknown	unknown	gnl\|CDD\|368288
NC_018142.1\|WP_041696068.1\|229348_231010_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NC_018142.1\|WP_051014892.1\|210850_212128_-\|type-VII-secretion-associated-serine-protease-mycosin	unknown	unknown	gnl\|CDD\|274856
NC_018142.1\|WP_157682447.1\|228862_229180_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_123823950.1\|216914_218261_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274855
NC_018142.1\|WP_014845353.1\|215408_215726_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NC_018142.1\|WP_123823938.1\|228107_228626_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845343.1\|204018_205398_+\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|367155
NC_018142.1\|WP_123823953.1\|215043_215367_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845356.1\|218406_222402_+\|type-VII-secretion-protein-EccCa	unknown	unknown	gnl\|CDD\|274858
NC_018142.1\|WP_014845344.1\|205487_207983_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|223533
NC_018142.1\|WP_014845346.1\|208832_210329_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NC_018142.1\|WP_123823947.1\|222887_225701_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845351.1\|213500_214814_-\|type-VII-secretion-integral-membrane-protein-EccD	unknown	unknown	gnl\|CDD\|274855
NC_018142.1\|WP_014845357.1\|222519_222864_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_123823944.1\|225729_226386_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845345.1\|208053_208488_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|252996
NC_018142.1\|WP_014845342.1\|202967_203633_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014845350.1\|212124_213501_-\|type-VII-secretion-protein-EccB	gnl\|CDD\|368288	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B. EccB is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	4.99414e-47
NC_018142.1\|WP_041696068.1\|229348_231010_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	6.40377e-25
NC_018142.1\|WP_051014892.1\|210850_212128_-\|type-VII-secretion-associated-serine-protease-mycosin	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	2.36479e-78
NC_018142.1\|WP_123823950.1\|216914_218261_-\|hypothetical-protein	gnl\|CDD\|274855	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD. Members of this family are EccD, a component of actinobacterial type VII secretion systems (T7SS) with ten to eleven predicted transmembrane helix regions. [Protein fate, Protein and peptide secretion and trafficking].	2.36495e-06
NC_018142.1\|WP_014845353.1\|215408_215726_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.91661e-07
NC_018142.1\|WP_014845343.1\|204018_205398_+\|DUF222-domain-containing-protein	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.79858e-14
NC_018142.1\|WP_014845356.1\|218406_222402_+\|type-VII-secretion-protein-EccCa	gnl\|CDD\|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_018142.1\|WP_014845344.1\|205487_207983_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|223533	COG0457, NrfG, FOG: TPR repeat [General function prediction only].	1.08842e-16
NC_018142.1\|WP_014845346.1\|208832_210329_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NC_018142.1\|WP_014845351.1\|213500_214814_-\|type-VII-secretion-integral-membrane-protein-EccD	gnl\|CDD\|274855	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD. Members of this family are EccD, a component of actinobacterial type VII secretion systems (T7SS) with ten to eleven predicted transmembrane helix regions. [Protein fate, Protein and peptide secretion and trafficking].	1.0928e-14
NC_018142.1\|WP_014845345.1\|208053_208488_-\|hypothetical-protein	gnl\|CDD\|252996	pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This family consists of REP proteins from Dictyostelium (Slime molds). REP protein is likely involved in transcription regulation and control of DNA replication, specifically amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity.	0.0029846
NC_018142.1\|WP_014845342.1\|202967_203633_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.69439e-84

>NC_018142.1|WP_014845353.1|215408_215726_+|WXG100-family-type-VII-secretion-target
MSIEKDMMVNYSAIDLLSEDINKHHRGIEASMDTLTGKLDLMESSWDGEDREAYAVRRREWNQKELEMRSALQQFNIEVFNAKLGYHGAEVQNRRIMDNVEIPKA
>NC_018142.1|WP_123823953.1|215043_215367_+|hypothetical-protein
MAGTVRIVQGGLKAGSDATLEAYNEVSGHIKGVDASKEAARAGWQGQGSDAMYAAAMLWIEKATALNNSLLGFSDALKGSEANSGQAEVTHSAAFLNLEKRMTGGAV
>NC_018142.1|WP_014845351.1|213500_214814_-|type-VII-secretion-integral-membrane-protein-EccD
MPSSESSPVGALLPISLSMAGDTTDISVPPNIALAELMPAIIKALRPLDPGTATRGFTIRTSDGRVLNQSESLPDQRIRPGAVLTVEPSGTNVKDQRYDDLVEAVGTAVAENSVPWEKTSSVQLSAHASAALVLLAALLLVTGSREPVLTATVGACGAILTTLAAAVVARMPNRPGALSLGHTTPVLISCAAFAVTPGHWFSLPLAAAGIGLLAGSATLLVLPSDLRVSMTAPMTAGVSFILVGGLVGMMDIPPDRAAATTLALLVVITLSAPWVAMAQLPTTIGTSRENERIDPVRVYSRVGNARVLVISLKAGCSAAMMVLAPLMATSPTAITMLACVGLALMLATRSLRSSVEVVIGVLTGMFLTVVAAVATTTVIPDALPWTLGAIILAAVLLLAANVVSQKLRPWLTRLADVAGVLVLLGILPLAALVWGVV
>NC_018142.1|WP_014845350.1|212124_213501_-|type-VII-secretion-protein-EccB
MPSNKEILEAQRYNRRRLITAFSSGIPGGRELESKSPFIPLIVGVVVVAIMLGVGAIISQFSPTLPNGWQDSTLIVVKGTGSRYYTIKGTLRPVTNVTSARLLSESGKYQVSEVSSSTIDGISRGTQIGITGVPDDVPPAGQLHSDLWFSCAIPGKTHTWVAHLPEPRTRRGSVLVKNQDDFFLIADGLRHKIPREQRNKVLLALGMESTTPAEVDAAWLSLFKLGSDLQPLEVPNAGQPVEGMPERLGTVTIGTVIQVDDHGSQRRYVVTGSGKVATLSETADKLHQTEAPLTVSFSDMSSVEVDPAGIAPADWPRRIEDTVPGGSLPCAQLSQSSDGSSVAALYSMTREALVEALPAPSGTEANAEEKLRSVPTPTTVLGGSGALVRATSGGTLGMVMLVSDLGTLHGLGAQPAESLARLGYTDNDVHVIPAEWTALIPEGTALEPESAWATVGQQ
>NC_018142.1|WP_051014892.1|210850_212128_-|type-VII-secretion-associated-serine-protease-mycosin
MIRLRVLGGKLAAVCGAVALLVPSLPAQALISDGQSRINTVAEDKSTPCQIGTTAMVAQAPNVISLLGIKKAWQLSRGSKVKVAIVDSGVVASNVHLTENVLPGIDLVDSGDGRTDAAGHGTAIAGQIAAHEVEGSGLVGLAPEAEILPVRVYVSEQHDATSAGKGPDGARTAKGIVWAADQGAKVIVVAQSSPTDLPELKAAVEHAAASGALVVASAGNVPQDQQNRTEDPKAPRYPAAYPQALSVTAVDANGAPSDSVLHGEHVEVAAPGSQVLSTFFGDGDCMFAGNQPTTSYATGYVAGIAALVVAKYPDETPADWKHRILATALRPSRSHRDKLIGWGIVAPYDALSFVNDGSLEGPENPRFPAPTKQETPLMTPPEPKPDPRPARTAALGVMAGISCLAALAILIASRLRGPSQKKSRK
>NC_018142.1|WP_014845346.1|208832_210329_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTKITHWIDGAPYEGQPSHTIPVENPATGKVVGELISASPADLDHAVASAKAAQKKWAKVSLAKRTAIMFKMRELVLAHQDELAKAIVEEHGKDYSDAIGEIQRGRETLDFACGINVALKGEYSFDISTGVDIHTIRQPVGVVAGICPFNFPVMVPMWMHPIAVAAGNAFILKPASPTPTASLIIARLYKEAGLPDGVFNVLAGDRNLVSNILTHPGIDAISFVGSTPVAHVIQDTGVSHGKRVQALGGANNHAIVLPDADLEFAAQHISAAAFGAAGERCMALPVVVAVGGIADKLAELVAANGAKIKVGFGLDEGVQMGPVITAKARDRIVGLIDDAEKRGAKVALDGRGLKVEGYEGGFWLGPTILTHVPLDAPAYKEEIFGPVLCIVDAENYAEAIEIVNASEFGNGAAIFTNDGGYARRFQLDVEAGMVGVNVPIPTPVAYYSFGGWKESLLGDTHIHGPEGVHFYTRAKAITTRWPSESGAYAATMSFQREE
>NC_018142.1|WP_014845345.1|208053_208488_-|hypothetical-protein
MKSERTRLTLTLVGIGAAGLLTAGLLFQLAHPAEPELNSPAIVVSPPAPSESPSSEPPIPTEVTPVDPAGPADPTSSTAQTTSRPANTTVATRTVPTTTSKKIDRDDDDDDDRKSTKSTKSTKAATAKPTKKDSDDDGDDRDDD
>NC_018142.1|WP_014845344.1|205487_207983_-|tetratricopeptide-repeat-protein
MSKRSTRSFDPGTSVLWLLLPVIGAIVGAAIPYLNSLDKFWSVIGPLLGAFVGFVPALKSWISARARNKWITEVSGDSGPIGEADLNSLCIHRSDRDVKDYVRRDAHDKLHDFLKDRTPVLVEGPSMAGKTRLVVEVLREEWPDARVLFPKSKEDVEKLLKNWRRPVRGAIIFLDELERFLGKEEFTLGVLNKWIDDSCIVVATTTHMNYTRWRKDLDSKFPGWDIFNRFHPLPLETKLSKHELEAVGNTSYAGDLPSIEQLGLGRVLGRAEDIRRRFTSALDSHQGRAGLVKAAVDWSRAGLGAASKETLLTLAKACDDDLWEEPDWEAEWSWVIGETATDAPLVLRTGKDSWEALDLIVEEADWPLTNTTLTTMATCPHTAFQAVTLVFKMRSKNLLAGGRATESLVQEAADLLQEISSANPTNADFLCFYTFLLTDIRQDYDRAEEIYEKAIKAGLNDVIILSSYAIFLTDIRRDHDRAEELYKKAIKADPNNAITLGNYASFLKNIRRDHDRAEELYKKAITINPNNANTLGNYANFLKNIRRDHNQAEELYKKAIKAGPNDAITLGNYAIFLTDIRCDHDRAEKLYKRALAIDPNNANILDSYAVFLKNIRQKYDRAEELYKKAITIDPNNANTLGNYAIFLTHIRHNYNRAEKLYKKAIKADPNNANTLGGYANFLTGIRHNHDRAEKLYEQAIKADPNDAIYLGNYSQLLFVTGRDEKGAKFTERALGLAERGQEALCAECHFYLFMHSPRHRTASGRALKALLADGVTTGGWSFEENLERLTQEEDPRYELAREVAEALRTGDTSALNDFEEWRDLDLPDREE
>NC_018142.1|WP_014845343.1|204018_205398_+|DUF222-domain-containing-protein
MFEMVPGCVAEAFAALDEANRHARAAEVAAVVAVAKAAELYEVDQEAVFEGMERVIFPGHAGTPGVGEFLAAEIAGILGISTGSALQRIADVLDVRFRFPRLWEAFLGGELRWWQVVDATNRAAVLGVKAVEWLDRQLAWAMKVWSWQRILKHIDRWIVEADPAVAAERAEAERRRRDVEVSGITDGHCTIWGIVDAADGVAFDHALTAVARTLPAEDGDLRQRRAAAVGVLARRVSGQDVLPAATVVVHVNATDPALGLVGPTDEAGGIAGSSPVASGAAVVERWGALLTARIPEFLAGSRVTVRPVVDPWAISPETPHHPSVSLRTAVETLMPHDVFPYGATPSRSCDLDHTVPYADDGGPGQTRWGNLGPLSRFTHRVKTHGGWHLTQPEPGIFHWISPAGYHYLVTAQGTIRIASPPPRPREPEPPPDWEDPPPPEAERSLETEAWAAAAWVLAT
>NC_018142.1|WP_014845342.1|202967_203633_+|response-regulator-transcription-factor
MSSILIIEDEPRIAGFIAKGLKSAGFTSETTPSGEMGATLAVHGNFSLIILDVGLPDIDGFEVLERIRGQGVATPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRLRLRTEPEPARTTVNYLEHRGLVLDYRTRRAQVDGQWVDLSAREFTLAEVFLRNPGQVLSREQLLSNVWGFDFDPGSNIVDVYVSYLRNKLGKQRFETVRGMGYRLV
>NC_018142.1|WP_123823950.1|216914_218261_-|hypothetical-protein
MATQLASTTILHGASKQDIAVPVGTTVARVMSMLRIDADPETLCLTHPDGTPVDLDLALGSDLTSGTVLTLTGPAESERVAQQVAVRASSPWFRPTLVLSLFLTLVTGIETACLAGPVLGWWPVSDVLRGSAAVTCTVALGWSLKWRRIRCTAPGLLVATALIGVCGTALLPTDAGSLPRLALAATAWTALVAALVVWLVDNRSALSSTMAALWGLAGVLTCLFAVTDAPVTAISALVLAVATMTVTVIPTFAFRIPETQLLDLPTVTTSAPTVRTPEVAAPAPITANRVLRSIREGNARGQLLLIACCGTAGICAFPAAGLMRSDQPATGIAGGVMMLSAFLALALAPRARRDRPGRILPRIAALAIVAATLSVFGLSQPLGSQVMALLMIIAAASLSIITTSFAKGTESALLGRAGDITQTLSLILLPPAAAYAAGLFDLVRQIAS
>NC_018142.1|WP_014845356.1|218406_222402_+|type-VII-secretion-protein-EccCa
MVQPIQDEGTTAPELPSGQIEIQVPPDQPEAASMGTALMTVVPMMGSVGVMVFMALSQGQNTRMLLMACAMVFAMLVMVGFNIYRQVAGHSQKVDTLRREYLAYLGETRKTVRTVTRRQRNYVGWQLPSPDSLVLIAHEGTRLWERNTDNEMVTHVRLGSSSQELAMQLVEPELPPLAKPDVVCLSAMRRFIDAHSMVEELPLGVMLGDFSHIDVAGPAEATQAQVRAMTMHVTTLSSPQAMRVAVFCSEKNRDEWEWVKWLPHARSTQLSDALGPARMVTTDPEELVQLLGEEITGRGVFRARSETTDWPHLFLILDGVSLPMNTSLGGIGGLEGVTVVRTMTSWGPMTSRATLRMILHPGARPGDRGRMELLLLDQEPILATPDAMGIPQAEAIARRMAPWMAEDRPEAEAPMGKPDPKRSQNLMELLGTGDVRDFDPDRQWRRREGRDRLRVPFAVTPEGVPVVLDIKESAQQGMGPHGLLIGATGSGKSEVLRTLVLAMAMTHPPEQLNFVLVDFKGGATFAGMADLPHVSAMISNLESELSLVDRMQEALRGEMVRRQEILRQAGNYANVTDYEADRLAGKHDHPPMPALFIILDEFSELLSAKPEFADLFVAIGRLGRSMSIHLLLSSQRLESGRMKGLDSHLSYRIGLRTFSAGESRDVLGVPDAYGLPGYPGVGYLKPGTDEMIRFRSSYVAAPPPARPDDQELRERMRDAPIRILPFTTGTVVLEKTDAEQEPEVVGIRPEDAKWDDMTQMDIAVARMRGRGIPAHQVWLPPLDVPDTLDQLFGDLVADPELGLISPSWRARGPLRIPLGTVDLPLEQRRDVLEFDFSGANGHFAVIGGPLTGKSTTLRSVVMALSLVHTPQEVQFYVIDLGGGGFTAFNGAAHVAGVATRDRPDVVNRMLSEIEGIIDDREKYFRGKRIDSMDTYRQGRAEGRFDDGYGDVFLVVDGWAVMKTDLNDVDTRILAIMTRALSFGVHVLLSTNRWADIRQQVADAIGSRLELKLGDVMDTRLDRKVAKAVPPERPGRGQEIGHHHVLVCLPRIDGEQDPSSLGKGVGTSLERIAQAAPAPGPKLRLLPIHVTAEKMLQHPGAAEGLVLGVEESRLGPFMFHPRQDSHLFLLGDAKSGKTTFLRSFVQEIMRNFSSQQAQIFVVDYRRSLLDQVPAEYLAAYMTNPEETEGVLGHLAEFLRARMPSDSVTSDQLRNRSWWTGAEAWVLVDDYDLVAIQGNNPLTVLQPLMAQAQDLGLHILVARRMGGASRALYEPVLQSMRDLGATGILLSGSPEEGSIIGRVKPVKSLPGRAQVISRDDGYFRAQLVWADQR
>NC_018142.1|WP_014845357.1|222519_222864_+|hypothetical-protein
MGDIEFNRAAVGINAKKDWEDADNFGQVGAYIDKLPSTGIAYPLPAGPNEGVQALASKALNFNQVTRWAAAEYSDACGVLGSGQEQVISNYDETEKFNDEKFQRIASRMSGGDH
>NC_018142.1|WP_123823947.1|222887_225701_+|hypothetical-protein
MPLPPDVRDAVSRLAEGYRYARGMIQSTQVYSCPAYRVPEWVGEAKDAYMESIRRLGKHTHGFAGVFVSPAAALGQWSDAVDVAISKTVPELWERYDQAERNYQGNLQDLAERVRQETDAGRQVSAEEIADEKRTLLELRDEDQANILAEYKAAMTALDAVAGEVAGKFTAALDSFVEPGKQGSRNQVGSALFNDIPVVDGQAEWEQAQELAPQAARYLKNSSPTPDEIMEFNAKYGGMCSNPFFAQALAQHVTPEDMTRFLIKAEQYKGQLANRDAYDESLKSLSASLGSSMVLSTGGMNADPANAHDQEAFSAAKAGLVTDSGKSISALTSARLNQWKTVGNTLYRSDGAAVGAGQEYLGGNYGHHYGYEYLGTLLSSAANSNPNLALGAEFLNEKSSSGGVSGSLAQDIVAFDHKHGAEIAQYGGYGNWGQQLPPGGNRNATDPVESMLKLMDEPSSLHDGSLDGVPQHQDSISDQNAKRFEAVQKFLTSDTTFDVNAEDVPARENKLEAKGPMNMTRYLTGFRGNEYYSGTQDGGDSLGRVLAQAAAVETEPRGLDIESEEYKEWRERSKRAALVSGNFLRGYQEGLDIKNNLINGEDPFGAQHRSLRNWAGSILAPQVEGLTKSLGKPEGSAPVDVAPLTGENQYLISLNEDWCKRILGPNGLFTDLGFDQPLANGRESAINVLRVAAHASYEKDLSEVFASRNTLGEGSPGSSNALTIKDAVKGVQNKWAPILNDLAYSPAAASEQAGKALDANNARWNSLIQKGLGAIPFGSIIGEGRNVAKWLVEQTKSVGVPMALDALLDENNAEVARQEGIAAGHKERKWADDVFYQAVSEGKYWGEDERFSPKKYIENSGREVVNFLDSNGEVKPYNQMTEREKESFRRYISAERTTRADGVMVGGLNPIYREAPIAMDAAMNDAETKRKEFMGKK
>NC_018142.1|WP_123823944.1|225729_226386_+|hypothetical-protein
MFDFRRCVAAAVVVVLGLSGCGVSSDGVSPSPSVSWEERDTPDIVTIAVPDGWEVLTPGEIPGTANFMLVSDREPRGQEGISIGNFSPKIVGMHGPDVDVKYRRDEGVEHGTAQENLVGRGIPLEPRLIAGVKAWGYAATATFGEENTYPIQRWFLWREDGVWLISVAGFANTSVIPAELIGALDTISFIRPSGTPAAPYTVTTASPSPGPSPSVTES
>NC_018142.1|WP_123823941.1|226645_227167_+|hypothetical-protein
MAIAVPDGWVLLDREEVNDPRSLVIASSHHLPPVEGIQIHNSPPDVEDAHGPDNDMEFQRDQMVSSLLKTDYASSVRALEPRMIGGTQAWGYSAMITYRDGSTVPTQNWMLWREDGHWSIDVKGFANTSVIPAELIGALDTISFIRPSGTPAAPYTVTTASPSPGPSPSVTES
>NC_018142.1|WP_073969993.1|227495_227897_+|hypothetical-protein
MDFLEGDALRKYSNHVKFDPYTGKLDVEAYMSVWVSQEGVRQYPDTEFLGSRYLGGELAAGASFTRKTDKGVSHACQWWIVWRDDIRWDFELCSAPDASVIAPELIAALDTVTWVDVPPSFRCSPALSSDINC
>NC_018142.1|WP_123823938.1|228107_228626_+|hypothetical-protein
MTIAVPDGWDVLSPGEIPGTANFMLVSDREPRGRAGIRIGNFSPKIVGGHGPDVDVKYRRDEGVEHGTAQENLVGRGIPLEPRLIAGVKAWGYAATATFGEENTYPIQRWLLWREDGVWLILVAGFANTSVIPAELIGALDTISFIRPSGTPAAPYTVTTASPSPSPGATES
>NC_018142.1|WP_157682447.1|228862_229180_+|hypothetical-protein
MSDLNIVTGDLEALSTDVSNVATEISGVSVTTDMADAPSAMPGSSSAGSITSAASAIEGRRSSAQTCYEDFSADVTTAANNYGVSEANVETAMRSAGHVDTDAAN
>NC_018142.1|WP_041696068.1|229348_231010_+|hypothetical-protein
MTAMLGSLGSLNGSLDRVVNDVSELMMATADASDGVWDVQTKVAECTSFVEQYPYLSIGEDGTVNCEEEQATTMEQAAPNGPGQTATRNADRQKNAQELRDLIKAAIDRAVEVDNDYLKRLNALANGTYVCAETAASDSQGLPDLPQAGWSATEVSVWWNALTEAERRKLIEKHPDAIRNLDGLPGGARDEANRNVLERETTAAENHQKSVQEKYDAEQKKIDAAHKWAVLTNSGNSAGVLIKPPNPFEEELKQANRRVSDLAKLNELAGVMEEDGSGGYATGADGKPRHHYQLLTLDVPEGYDKDVKAAVAVGDVDKASNVATMVPGIGNTARNGMDGMLNNAEALRTAAGADKTAVVAWIGYDTPPGLLESDSNGSQTDYMTPARADEAAPALNSFEEGLHASHQRQGVDPNLTVHAHSYGSLAAGTALMDTKTGVVDAAQLHGSPGARATDAHQWNVPYGHMYASANGHDYVAGLGPDNAFGDDFGPDPRYVPGVGKIASTSNGGHSDYWNNPEFMEDAAQITAGEDPSVNRADNAAAVSVNARHSGQHH

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Crispr_ID: NC_018142_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_2

336475-336569

Orphan

Consensus_repeat	Method
TGTCTCCCCGGGAGCAGGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_2

>merge|NC_018142|2|336475-336569|CRISPRCasFinder
TGTCTCCCCGGGAGCAGGCCCCGGCGTCGTCGGAACTGTCTCCCCGGGAGCAGGCCCCGGCATCGTCGGAACTGTCTCCCCGGGAGCAGGCCCCG

>NC_018142|2|2|336475-336569|CRISPRCasFinder
TGTCTCCCCGGGAGCAGGCCCCG	GCGTCGTCGGAACTGTCTCCCCGGGAGCAGGCCCCGGCATCGTCGGAAC
TGTCTCCCCGGGAGCAGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014845445.1\|331483_333406_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_018142.1\|WP_014845442.1\|327034_328126_-\|TQXA-domain-containing-protein	unknown	unknown	gnl\|CDD\|369823
NC_018142.1\|WP_014845448.1\|335110_335704_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845446.1\|333524_334331_+\|collagen-like-protein	unknown	unknown	gnl\|CDD\|189968
NC_018142.1\|WP_014845453.1\|341212_342205_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NC_018142.1\|WP_041696102.1\|346622_347384_-\|DUF4282-domain-containing-protein	unknown	unknown	gnl\|CDD\|379475
NC_018142.1\|WP_014845444.1\|329825_331160_-\|TQXA-domain-containing-protein	unknown	unknown	gnl\|CDD\|369823
NC_018142.1\|WP_081490199.1\|345073_346558_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NC_018142.1\|WP_014845441.1\|325385_326702_+\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|214829
NC_018142.1\|WP_041696099.1\|334393_335098_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_051015105.1\|338404_339829_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_018142.1\|WP_110644225.1\|344088_345054_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_018142.1\|WP_014845452.1\|340661_341111_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NC_018142.1\|WP_014845454.1\|342328_342802_-\|YfbM-family-protein	unknown	unknown	gnl\|CDD\|378105
NC_018142.1\|WP_014845439.1\|322897_323839_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_018142.1\|WP_014845451.1\|339843_340530_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_018142.1\|WP_014845449.1\|337679_338099_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845455.1\|343003_344083_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NC_018142.1\|WP_014845440.1\|323835_325392_+\|M81-family-metallopeptidase	unknown	unknown	gnl\|CDD\|377823
NC_018142.1\|WP_014845443.1\|328330_329452_-\|TQXA-domain-containing-protein	unknown	unknown	gnl\|CDD\|369823

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014845453.1\|341212_342205_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NC_018142.1\|WP_051015105.1\|338404_339829_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.70279e-49
NC_018142.1\|WP_014845446.1\|333524_334331_+\|collagen-like-protein	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	7.38983e-06
NC_018142.1\|WP_041696102.1\|346622_347384_-\|DUF4282-domain-containing-protein	gnl\|CDD\|379475	pfam14110, DUF4282, Domain of unknown function (DUF4282). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 93 and 155 amino acids in length. There is a single completely conserved residue E that may be functionally important.	2.07281e-09
NC_018142.1\|WP_014845444.1\|329825_331160_-\|TQXA-domain-containing-protein	gnl\|CDD\|369823	pfam08341, TED, Thioester domain. This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue.	1.04285e-20
NC_018142.1\|WP_014845452.1\|340661_341111_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.87942e-55
NC_018142.1\|WP_014845441.1\|325385_326702_+\|alpha-L-fucosidase	gnl\|CDD\|214829	smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.	1.00259e-112
NC_018142.1\|WP_081490199.1\|345073_346558_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.80722e-139
NC_018142.1\|WP_014845442.1\|327034_328126_-\|TQXA-domain-containing-protein	gnl\|CDD\|369823	pfam08341, TED, Thioester domain. This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue.	1.73696e-22
NC_018142.1\|WP_110644225.1\|344088_345054_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	3.91815e-151
NC_018142.1\|WP_014845454.1\|342328_342802_-\|YfbM-family-protein	gnl\|CDD\|378105	pfam08974, DUF1877, Domain of unknown function (DUF1877). This domain is found in a set of hypothetical bacterial proteins.	5.98981e-32
NC_018142.1\|WP_014845439.1\|322897_323839_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.55669e-58
NC_018142.1\|WP_014845451.1\|339843_340530_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.53174e-88
NC_018142.1\|WP_014845445.1\|331483_333406_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_018142.1\|WP_014845455.1\|343003_344083_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	6.9208e-167
NC_018142.1\|WP_014845440.1\|323835_325392_+\|M81-family-metallopeptidase	gnl\|CDD\|377823	pfam07364, DUF1485, Metallopeptidase family M81. This is a family of proteobacterial metallo-peptidases.	1.85093e-117
NC_018142.1\|WP_014845443.1\|328330_329452_-\|TQXA-domain-containing-protein	gnl\|CDD\|369823	pfam08341, TED, Thioester domain. This domain is found near the N-terminus of a variety of bacterial surface proteins and pili. This domain contains an unusual covalent ester bond between a conserved cysteine and glutamine residue.	2.17152e-19

>NC_018142.1|WP_014845448.1|335110_335704_-|hypothetical-protein
MLGFAAVDRRSETVAIWLVSRTDPTEASSTNAVVVDLADEHALKKVHSLTRERVVIATPGSDLTGLPISDGHPTALLGEFIDATRTHQRAIVEAVRSYAASRKGQKLVEPTFPAEPQLPENWPETCQDRALELAGLVGRAWTNWLVSDGERLRRTTQPRTGRTPWIMPGELNQPELLALPPALAEKFRPEPVGPFPG
>NC_018142.1|WP_041696099.1|334393_335098_+|hypothetical-protein
MTELNAQPDGLRIPEELLGGVVDPELEEYIRDMIWTQLVRGNDSVNDHAYEIACAVEDEKDEESDGGTLSEAQCRAIAQYLIDARRTQQAGFGEVPASKLDRAFEALRRAHVVAEQDFSCCNTCGHAEIEGDQDDLGYVFFHQQDTESLAESGSTYLSYGIFWPAHISEEEYKALSSSQREELYDATTIKLMKTVVIPILQEHGIGVSWEGNVDTRILLTDVEWYAPLPPVEEG
>NC_018142.1|WP_014845446.1|333524_334331_+|collagen-like-protein
MMKLRRIGIVALILPLVLALSSCVRMRQEINVSSRDRIEVKVDFGVLKERAESGGIKDPSEVCQRGKSSSKLPGDLKQEGYQDDRYVGCRLSGTTKLTENGYLGFDESSKQWTFHMPGGNLQGISATMITDFEVKVTFPGKVLTASGKGEISGNTVTWKDPSDLADSEGLKATASNDPDLTWLWIVLGVVVVGGGAVAVILVQRGKAKAARPGPGQPGPQGGFQGPVNFQQPGQQGCPGYPGQPGYPGQPGQQGYPGQPGQPGQNPWR
>NC_018142.1|WP_014845445.1|331483_333406_-|alpha-glucosidase
MKPDRNATVAEVYAHPLGRDIIDKILLQTGRSATWVRNPLVSRLRLRQLDKFLGRMFGPGFVDTLVDLLADCPESPPRLDGPIAATWWKRAVFYQIYPRSFADSNGDGIGDLPGILAKLPYLDDLGIDCLWLSPIFTSPNKDMGYDIADYRSVMAEMGTIDDLRRLIAACHERGMRIILDLVANHTSDEHPWFKDALADPEGAHGDYYFLRDGNPETPPNNWTSFFSGPAWRRIGEKWALHLFAPEQPDLNWDNPAVRREVADIVRFWLAEGVDGFRLDVINYISKRDGLPDGNATVGQVMGFTGVEHYFHGPHLHDHLAELRREAFTRTDVEPGHEAPGADARPIMIGETPGAGVEVARLLTSSQRDELDLIFSFDHLETPGHVRWDEYAYDLNFLKHYYIDYQSRLGSDDWMSLFFENHDNPRMISKVNPDPRFRDQLGKALATILLTMRGTPFIFQGQEIGAVNQDFPDESALRDVESLNLLAAEGPGAWGKIMAGSRDHARVPMRWDRDEHWGFTRATPWIKAFDDSVGYSVAAQEHNPDSVLRYYRRLIWLRRSNPTLSLGSIRFIDADVKDYFAWFREHNGERWFIEVNLSGHPLRRRHRERNLEIVAGTAKDRSGPMEPYEALVCQVPRDGGE
>NC_018142.1|WP_014845444.1|329825_331160_-|TQXA-domain-containing-protein
MKAASSCARARKLLASVAAALAATLTFSMSPAHADDPPDSGYPKIGTSSESVPGYRLNVKKIEDGKPQPNHVTPHLFTVHTEKGVIKAYCIEIEIDVIYGSSLRIGGWKDFPGTNKFKDNPDVQAKVAWIAQNSYPQTDLAKVTQTTGIAGLTEREAITATQAAIWHLTNPDETPSLDLAEGDQATKDRTGKLYDYLLGEKNGGLKEPAHPTIGIKGGDLPFALNDAKTEGKVGPIRFESNQPTAKLTSELKYELVDKDGKAVDRNAIPTGTDLYLKVPADKTSGEQEFTASVTSTVQAGKLFITKSGKHGQTIITVSTDEIPADSQGKVTWSAPQQTPPAPPTSQPPTSAPPTTSAPPTTSAPPTTSAPPTTSAPPTTSAPPTTSAPPTSQPPTSAPPPTSAPPTSQPITPTQPSTTATSTVTVTKSADPPVVRKPGLPRTGD
>NC_018142.1|WP_014845443.1|328330_329452_-|TQXA-domain-containing-protein
MKAASSRTRTRKFLAFAATSLAAVLAFGTPTAHADDSAYPQGYPKLGARTESVPGYNLKYSGAGYRNVPTMLFSVHTSSSKEGNIKAYCIELEVNIQFESDLKVGGWKEFPGTNKFKDNPDVQAKVAWIAQRSYPQTNLAEVTKASGIQGLTEKDAITATQAAIWHFTNDFEYQGLDGTDQATADRVGALYKYLTGEKNVGLKETAKPTVEIKGENGTFKAGDPVGPIRFESNQATVKLTNELKYDLVDKDGKAVDKNAVPTGTDLFLKVPADAPAGEQEFKVSATGSVYAGKLLISKGNRSQTIIIGSNKEVTVEASAVLKWNAVPKATTPAPTPTPTPSNSTPAPKPSKSEPSTPKPGTPKKPGLPRTGTI
>NC_018142.1|WP_014845442.1|327034_328126_-|TQXA-domain-containing-protein
MGAFSTGRFAKGLLAFVATFVAAVLAVGAPNARADEYQPGYPKLGQDSELVYGHDLYRDGALGTQLLTVHTDDRGGRILAYCIELDVHSNWGGELQQTDFSAFPGSNEFAKNPQVRSKVSWIIHRSYPQTGVAQVAAAAGVPGLTEREAITATQAAIWHLTDNFAFNGLHSWEAPRHDTESERAQRVKKLYDYLLGPANTGLPESSGPSVEVTAPKAPGTSGELVGPIRLTATQQTVALAALPYPLVDAQGNEVDLSAVPTGTDLFLKVPADAPAGKADITASLTGDTHTSHLLVAQSGRWQTLIIAKTKQVTVTARGEVSWAPAKAPSPSPSPSPSPTPSASTPTPGPGIPAKKPGLPRTGS
>NC_018142.1|WP_014845441.1|325385_326702_+|alpha-L-fucosidase
MLNFDERTGPALGVDYPDVTVPDWYRDAKLGVFIHWGIFSLPAWAEPHDGRVPVEDAYARHRYAEWYGNTVRIPASPCRARHVARFGEGTSYEDLADRWRPGDLDADAMIRAVLRSGARYVVPVTKHHDGFCLWDTATTSFNAARRGPGRDLIRQLADATRAAGARFGVYFSGALDWHVSDLPPIQSDRDLFLLRRNDEGFARYAAEQLTELIDRFRPSVLWNDIEWPDGGKGDDGFGVAALWRHYLETVPDGVVNDRWGVPAHGFLTREYSDVDGVQEQVWEATRGLGLSFGYNAEEDEAHSLDAVGLIRYFVDVVAKNGNLLINVGPRADGSIPQLQQRALDGLGAWLEVNGTAIFGSRPWRRAADGEVRYTVVDGVVHAFLLSPASGELRLPAELAQAESVAWLGVGAAPVAGGVAPVPESLRAQPVAVAAIPVQ
>NC_018142.1|WP_014845440.1|323835_325392_+|M81-family-metallopeptidase
MTTAADIWCPPLPPAADGGIARPRIAIAGMSIESSTFSPHLSGDEAFTRREGDELLSYYPFLDAGRELREAVDWVPLHHGRSLPGGAVRPETYQDIKARILELAASKGPFDGLLLDIHGAMSVVGMRDAEGDLATALREVIGPDCLVSATLDLHGNVSATLVDQVDLITCYRMAPHEDVMNTKERAAWNLIARLRSGVGADVAARRPWKAFVPVPLLLPGEKTSTRVEPAASIYARVPEIEARNGVIDAALWVGYAWADEPRCQAAVVVTGDDREAIAAGASELAEAWWAARDDFCFVGPTDTLDGALATALAKDAPRPFVISDSGDNPTAGGAGDVSWTVRELLAHPGLTDGGRVVIHASTFDPEAVAACFDAGVGGAVDVRVGGNVDAVAPPAEVRGEVFSLTEGDPVAGRQAVVRCGSVHVIITERRKPFHLLDDFRQLGLEPEEADVVLVKIGYLEPELFTLAKAWVMALTPGGVDQDLLRLGHRNLVPGTWPFDRSNPDPDLTPSITRRGAGC
>NC_018142.1|WP_014845439.1|322897_323839_+|ROK-family-protein
MLRIPSPDDVLHGPVVAGVDIGGTKITAVLADVDGNVLASDTTASGCGGQALIDAAAGLVTRIETCSGLRAAAVGAGAAGVIDPDSGEVLAASGTFPDWRGRRPAEAIADLTGRPVKLVNDVNAFLCGEARWGALRGVSDGLAIMLGTGVGGALLIGGRPHHGPRGGAGEIGHTPGYPGHRCTCGGVGHLETLASGRSLALRYADLTGRTGLTGSDIATAARRGDSAAVEVFTRAAQALAQGIVVATTLLDLTDVVVGGGVTAAWDLLGPLLTEALATDPPITVPIPGVHRATLVNPALGAAALALDLKETVP
>NC_018142.1|WP_014845449.1|337679_338099_-|hypothetical-protein
MSPRPAAYYAASTLHAAPDSSPIPLRTHVLVSVLIGLVLWSVTEQCWPIAVGVMTLIAVVAVFRGRRRHGSHLPPSRFLVAGMAVALSLPFTIFLLDLPGLPVGVFVVGTTVVLAAMRVDEKKRRRRLATGDFSYRDLW
>NC_018142.1|WP_051015105.1|338404_339829_-|HAMP-domain-containing-histidine-kinase
MRVRRGVERLITGQSLRSRLASLTGISVAAAVLLVGSTAYLSTRISLRDQLDREMLSAARATAEIINSDIRNLDNLGPGLGTSQELLAVTTARGETSQAGKQSLALFPDAGEIAVARMQQGYRARSVKLADGQEYRLVSVPVRARDRTGQVQSYAILYARPLTSLGTTLNSLWLVIALSGLAGIVATTLTALWMAQTALAPVRRLSTAVKNVTQTDQLNPIRIYGRDDLGELTRSFNLMLKSLQTSREQQRQLIADAGHELRTPLTSMRTNIELLVADDKSGMLPEGARSEILDDVSAQLGEFSALVGDLVALTRDDHLQRQPERLDMSEVVEAALARAARRGPNITFHTRLEPVPILGDASTLERAITNLLDNAVKFSPSDGEIWVELTSAGVLTIVDSGPGIADDDLPHIFDRFYRSDRARNTPGTGLGLAIVTHTVEAHGGSVRAGNQQGAGAKFTMRLPVLSVPESPLSP
>NC_018142.1|WP_014845451.1|339843_340530_-|response-regulator-transcription-factor
MQILVVDDDQAVRDSLARSLKYSGDEVTTAADGVEALAQLAGHTPDAVIMDVMMPRLDGLEATRMLRQSGNDVPILILTARDAVGDRVDGLDAGADDYMVKPFALDELLARLRALTRRSKPTPENDSKVLVFGDVTLDPQHREVTRAGQHISLTRTEFALLQAFMENPRRVMERNTLLNEVWGFEFPATANSLEVYIGYLRRKTEAGGLPRLIHTVRGVGYVLRETAP
>NC_018142.1|WP_014845452.1|340661_341111_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MAKVVFVCWGNICRSPMAERVARGMAAERGLDVEADSVGISSEETGNPIDRRAAAVLREAGYSTGGHRARRVTADDLASADLVVVAERFHIGRLEQLCPDANYALINDFNPAMPKGQDLDDPWYGPASGFRSTLADIEAAMPGILDALA
>NC_018142.1|WP_014845453.1|341212_342205_+|ornithine-carbamoyltransferase
MLKGRSFTKETDLTPAEWLAVLDLAAQLKAERRERREVKRLVGKKVALLFEKTSTRTSCSFDVAMTEQGGYATRLDTAGSQFVHKESAADTARVLGRWYDGIEYRGFAQETLETMGRHAGIPVYNGLTDSWHPTQMLADQLTMLEHSGKPLEETSWAFVGDVRNNMGNSNLISAAMVGADIRLVAPKQLQTTDEVRAQAEAIAAGTGARITITDDIAEGVAGVDFLHTDVWLSLGEPKELWAERIELLKPYQVNAEMMAATGNPRAKFMHCLPAFHDRNTTVGEEIYQATGLDALEVTDEVFESEASIVFDQAENRMHTIKAILVATLAD
>NC_018142.1|WP_014845454.1|342328_342802_-|YfbM-family-protein
MLGLHLRLDAADVSRLTDNEEDLADILEEFEEDEQLFDRACQTDRAWEPIHNALAPDGEDDEWPARGVIGGARTLHEDDDIWVTHSSPDEVEEIARWLEAFGDDDFHRAYTGMPEELRGPGHGPEEESYALESLADLRSFYLEAAAERRHVIFTTYG
>NC_018142.1|WP_014845455.1|343003_344083_+|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MKHDMVQLLTPDGQRVENPGFSFEGTDDDLTQYLRDMVLARRFDTEATALQRHGELGLWPPALGQEAAQVGSAHALGARDVVFPTYREHAVFLALGLPFQQILALFRGCDAGAWDQLDRFRNYQIIIGSQTLHATGYAMGLQLDGLVGNDDGDNAAVIAYHGDGASSQGDVNEAYVFAASYNAPVVFFCQNNQWAISEPIALQSRIPLFQRARGFGFPGVQVDGNDVLAVHAVTRWALERAHQGEGPTFIEAFTYRMGAHTTSDDPTKYRLDEETAEWAGRDPITRLTTHLKRQGIIDDAWLAALDADARDFGAEIRAAIPKLTDLTMDELFDNVYAENTVALEAQRREYAEWAAGEQA
>NC_018142.1|WP_110644225.1|344088_345054_+|alpha-ketoacid-dehydrogenase-subunit-beta
MTIAKAINLGLRRALQADPKVLIAGEDVGKLGGVFRITEGLQAEFGTNRVIDSPLAESGIIGTAVGLTMRGYRVVAEIQFDGFVFPAFDQLVTQVAKLHARTAGRQPMPMVVRIPYGGGIGAVEHHSESPEAYFCHTPGLKVVTPSSPHDAHWMIQQAVASPDPVIFLEPKRRYHVKGEVNVEQRPAPMHQAGILRQGTDATLIAWGPMVRTCLDAAAVAAEEGTSVEVIDLRSLAPIDWVSLAASVRRTRRAIVVHEAPRTLGLGAEIAARLHEDLFYDMESPVLRVTGYDIPYPPSRLEDEFLPSADRILDALDRSLAW
>NC_018142.1|WP_081490199.1|345073_346558_+|2-oxo-acid-dehydrogenase-subunit-E2
MMKRQFLLPDPGEGLTEAEIVAWRVTVGQEIEVNDVLVEIETAKSLVELPSPYAGTVTSLLVAEGVTVEVGTAIVEIEDGVEGGGEEPPTLVGYGPRDEPARSRRRRRNTPGRDAEAARQALGESYASREPSRRPDDVDPAGRVVAAPVGDPLPETGDAPTESVLVLASDPQSARAKPPVRKYARDLGVDLGKVAGTGPEGTITRADVEAAWIFERSRAAGEATREEPAQGRVINDAASFQDPGPRSHGFGSPRGPEGGGERRVPIKGVRKVTAEAMVRSVNTHVHVTEWLTTDVTGTMEFVEALRARREFAGLRVSPLLIHAKAVCLALGRNPDLNTSWDEENREIVYHRDVNLGIAAATPRGLMVPNIKAAQDLSLLELCRALNQLVAVSRDGKLQPPDYAGGTFTITNVGVFGVDAGTPIINGDESAILCMGAIQRRPWVVGAGTEERVVPRWVTTLAVSFDHRIIDGEQGSRFLHDVAEILAEPALALLF
>NC_018142.1|WP_041696102.1|346622_347384_-|DUF4282-domain-containing-protein
MSNNQWTGAQDWNAQPQQSNAQDWNAQSAQDWNAPAQQPAQDWNAPAQQPTQDWGASSQDQTTIQPAAQDWNAPAQEQTSVTAAQDWNAQPQQSVPSAPEWGTPGQENTAQQNMQDWNQQAAWGAAQQAQPQQQQPQQQWNDQQQAVPYGGPQQWGGQQQAPSGLAALFDFGFKGSVLKNGIGIIYLVTAICFAVFALFELIAGVSASSQYNVLAAFRSLFVPLALAFVGIILSRAFLEGMAALVKKNDDKQE

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Click the colored protein region to show detailed information

Crispr_ID: NC_018142_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_3

364380-364473

Unclear

Consensus_repeat	Method
GGTTGAGCCGGGCCGCGACGAAG	CRISPRCasFinder

1 spacers

cas6

The CRISPR arrays of NC_018142_3

>merge|NC_018142|3|364380-364473|CRISPRCasFinder
GGTTGAGCCGGGCCGCGACGAAGCTTCTTGAAGTTGGTTGAGCCGGGCTGCGACGGATGCTTTTTGAAGTTGGTTGAGCCGGGCCGCGACGAAG

>NC_018142|3|3|364380-364473|CRISPRCasFinder
GGTTGAGCCGGGCCGCGACGAAG	CTTCTTGAAGTTGGTTGAGCCGGGCTGCGACGGATGCTTTTTGAAGTT
GGTTGAGCCGGGCCGCGACGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014845466.1\|354535_355336_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223635
NC_018142.1\|WP_014845477.1\|366187_366352_+\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366
NC_018142.1\|WP_014845484.1\|371377_373402_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|378373
NC_018142.1\|WP_014845479.1\|366806_367424_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_018142.1\|WP_014845483.1\|370118_371378_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845480.1\|367402_368026_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NC_018142.1\|WP_041696105.1\|356246_357194_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845472.1\|362332_363283_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	unknown
NC_018142.1\|WP_051014895.1\|369219_370032_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_018142.1\|WP_073969986.1\|365535_365820_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NC_018142.1\|WP_014845475.1\|364198_364363_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845478.1\|366348_366810_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100006
NC_018142.1\|WP_014845474.1\|363920_364151_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845471.1\|360515_362330_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380122
NC_018142.1\|WP_014845469.1\|358711_360079_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845481.1\|368434_369202_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_018142.1\|WP_014845468.1\|357317_358715_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845486.1\|373860_375090_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845473.1\|363275_363815_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_095532229.1\|355375_355858_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379172

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_073969986.1\|365535_365820_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.6144e-22
NC_018142.1\|WP_014845466.1\|354535_355336_+\|HAD-family-phosphatase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.32986e-53
NC_018142.1\|WP_014845481.1\|368434_369202_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.402e-78
NC_018142.1\|WP_014845478.1\|366348_366810_+\|RidA-family-protein	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.13867e-58
NC_018142.1\|WP_014845484.1\|371377_373402_-\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00220589
NC_018142.1\|WP_014845471.1\|360515_362330_+\|hypothetical-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	9.06619e-06
NC_018142.1\|WP_014845479.1\|366806_367424_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	6.23649e-100
NC_018142.1\|WP_014845480.1\|367402_368026_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.26947e-47
NC_018142.1\|WP_014845477.1\|366187_366352_+\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.000471589
NC_018142.1\|WP_051014895.1\|369219_370032_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.34468e-07
NC_018142.1\|WP_095532229.1\|355375_355858_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379172	pfam13412, HTH_24, Winged helix-turn-helix DNA-binding.	6.37749e-05

>NC_018142.1|WP_014845475.1|364198_364363_+|hypothetical-protein
MTTITRQVITWKPDNERLKINFAGEKVNWPERMQSAEVLGENPVTFIKEENGRS
>NC_018142.1|WP_014845474.1|363920_364151_+|hypothetical-protein
MPEQKRTTEARYLSGQGEAKWSQPREKAGELTCAWVDYDGFHIDPCPEEAPPYSHIWGWSRDGEVLLRGRIDAGRA
>NC_018142.1|WP_014845473.1|363275_363815_+|hypothetical-protein
MNEYAYVEEIDEDHVRVWPLTDSELTWNGEKVLTRKDGFTLEIEMCLGYEKGNPGYYLVETDELPEVCMLESPISGTSVGSKRSKTWRKELWIPEGSGGLEGALRDKAYSHDFDLLEVEPKRLCWGGEGLDRWIETAKEEVERKAARKKAGKIREKLKEFHDGGNAFINPYTFVPLPGK
>NC_018142.1|WP_014845472.1|362332_363283_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MGSPRSLPAVRVRIWQVLLRAETGERHLTLTPSGIHAMVSSWLHRSPGGDGEPHSEEHRYAVRWRQVSEFAVLVELRLFDDFLTPLLVDRVAFGNRERLGMVTLRVEGIQEVASVNLAEIAGRPSKGWRLRFPEGVTFKRGDVFMPWPDPYLLLGSIQRRLALICGRDRDEQRLPREVMASVFPTQVELQSVRWTEGDPSRASLRDVRVALGEVDWLCTGDEASSSLIDRLLQVGELTGIGARTAWGTGVLEIADRVPMRSIVAGNKRHSRRGPSRPSGIGRTGRTPFPRFAGESGEWGFDDERPGGSQGRRFGSE
>NC_018142.1|WP_014845471.1|360515_362330_+|hypothetical-protein
MTSSRPPGRGNGPVFISYHQKSGTADAEFIETYLRAGGIVPWRDIRDLEAGTVERNITQAFEEGLSGGVLLLSDGISESSFVPKTEAPLLVGAHKADPDGFQLHIVNTFRKPGSPDECDFDAPGKQLKTKYPEAKQLKDHLQRRLLHSDDKGGKPVSELNLVLRDLLRNRLKVRRPQLDDGEIEIGLQTRPEPNHLPADGSTVPEADLHIRLRQDNATQIPEELDYRCLQQALPVLIDELHAARIRRVLFRGGCHPSLAWALGAALPHAREIEHFTWRDTYGKDWASADEPEEHSTSIHLETLNPDGSRRALGFAPGEIPSGAELRRVLWGDAPAKNAVVLLAADDLRSQPLLALAEKLEDPAVLVINLHTPSADGAKKWIDHTEGAGLARRVGEILRRLRDLAKLHLAVSAPAAMAALTARWCNTLTIDFYELGNTGMGAREYIRVLRTESGNKSPITGVFPQGVPQVDEVRKLINLTPHDVTYYPEAGEPFTWAAPEGPDQWVRRQEQSEELPSLRVQGREIPVTRIRQGAIAPVPDPMPGVGYIVPRISAETARRPDFFFPHGEVRGQGGGIIGCRRLGCFEAVSNKVRPYLELLDPVPQD
>NC_018142.1|WP_014845469.1|358711_360079_+|hypothetical-protein
MSETDKQIVIEALGGGPVQVGTGGPAPAGNVTLPLRTVVVVVNPAEPEEAPCCLVADVDESQEELADLYGGATAGLASRAAGWDGPGRVGKLPLAPDDEDMAGAVARLGVVRWLQEWSPLPLDWRLLRLEELTLVASLTGRLADEPDRLPELAELCRYFHAHIDEEEFAPLTGLLGDALEQVANRFPLSGESGDWARQLLATWPPGEEAASPGRLDVEFIDRFTPELALAAGPERWGKLAESATVDWEQLPRGWVATGENNARWVLDLDVEGKIHCAVAVDGPQEVRWFGGVSWGRELSEDDRLGFDLFSGDDPEPVLSGELGYDPRTCGWAGSVTGTAVQTARLKQGREAGAGRSLRVRRDTTLRETFAPVAAAARRWSVRGVSALRLLTAADDRDLRAGAVAALTEAASCWDAAGRKRDAEACRGLLRKLGSGEWKDWVGLTVAEQWLLHPRS
>NC_018142.1|WP_014845468.1|357317_358715_+|hypothetical-protein
MSKSFAQWCGQWLERLPKWERYAPKGFGVTVNLVVKRLLHPGVTAGPEWAGVERGERIGDERGRELLTWLDGRRDVVEKLLTLLRTGVDDAMARARQQGLDVTVSRVAEALAVAIGSKWKQAVVLTDMEVESVWETFLRNSVPLGRRMGRREFAGYQGLFDRLWEDKGRASLDAEPYGRYGLGENERPPLVVEERENVFLGLQRSVFSRFSFAAREPYVRGSADEIARREVSRTCARLGLIDESARIALRSLHAGLMNGPSGPGWKPPGATPGKRAWNDDLLPLGEETDPQGDPALEWEGIHAGLAALAQAMIATFTGRTLQGQYLKLAEKMEEAHQDAMRRAWHECFRLDMTGRPVTEAKASKIVKQAIYGGIPSGQKQRRDPRRLTGGHKDEIPPEDAGGSAEADRLALFERALEWLRADEERARAVVRGDEDATAEYERAAAELGLPSIDEVCHHMDQDWKQ
>NC_018142.1|WP_041696105.1|356246_357194_-|hypothetical-protein
MDGSRKTEAASPNCRETASEELFDAIKKLRSDGIQSPDLRLPEPLLKVLKLEPDSPFARHHVSKALLSCAACLEEGTRSAFLFSAGFSKDITGSPGERVNRSAAVLKMGRRTLYRHIEKAAHEITHLLLAGDHAPALENIDFVTTRTHCRLDLRDDSPTILMDRTVMALRDGFNALDEHLFLPLLRDELRYYALEGCRLAGVQDTGGSWIVQLRLPRCLNVGESHTFSVSVRLPDHDCLEPVFGLAPVTSMHAARIELHFEARLPSLVERIDRAWPYQLMSPTASGHPVDVMDKRVVADFRNMQPGWGYGVRWTW
>NC_018142.1|WP_095532229.1|355375_355858_-|winged-helix-turn-helix-transcriptional-regulator
MEDENSVETAAEVRTQAALVAHAAKLCGDCPLRAQCLTNAVVFHDVAGFVAGTTEPQRREIRARLGVTVEPEDLDSFAGVSSGRNFDHAEIHRLRQANPTQPLSAIAARVGCSVSTVKRHLRRAENQGGVVKSISQKNKPGKREVMKAAAEVLSPASSVA
>NC_018142.1|WP_014845466.1|354535_355336_+|HAD-family-phosphatase
MTFKPALVALDIDGTIVSVDGDLPDEVRDAVRRVVAAGVPVVLTTGRAWAGTQIIFDALGLPPGPSVCANGAMIVNYPPVEVVHEIRFDPADSISRVARLAPNAAIAVTDGMLWRVSKPFPDGELNGEFVVESVEELASRPVSRIVVHDPETDDDVFNEMVEALGLREVSYYMGWSSWVDIVPKDVDKARGLERVCGQLGVAAADVLVLGDGYNDIEMIRWAGRGVAMGDAPHGVRVAADHVTGDFGSGGAVQELERWFPAEIKAG
>NC_018142.1|WP_073969986.1|365535_365820_+|WhiB-family-transcriptional-regulator
MSLGELGEWTLRAKCRDMEDVLFPESKDQRRVRNICMSCPVRMECLAEALDNRVQWGVWGGMTERERRRLLRSRPDITSWREVLLTYGRLEEAS
>NC_018142.1|WP_014845477.1|366187_366352_+|DUF4177-domain-containing-protein
MTKWEYLTAPILSHVSQQILNNFGAEGWELVTVAPGPTPETMVGYFKRPLEEGR
>NC_018142.1|WP_014845478.1|366348_366810_+|RidA-family-protein
MSTPTQRLAELGLTLPPVAKPLAAYTPAITVGNQVWVSGQLPLRDGKLVATGRLGDAVEPAEGAEAAKVAALNALAAVADQAGGLDNVARILKAVVFVASTTDFTAQPQVANGASELLGEVFGTPHVRSAVGVAVLPIDAPVEVELVAELAAR
>NC_018142.1|WP_014845479.1|366806_367424_+|endonuclease-III
MTAALIGSRLAAAYPDARCDLDHRSPFELLVAVVLSAQTTDARVNQVTPELFARYPDAEHLAGAEQDDVEEIISSLGLYRSKARSLTGLARALVADHDGRVPDSLDELVKLPGVGRKTANVVLGDAFGIPGITPDTHVIRVSNRLGWVHSTKPDDVERAVGALFPPGEWVVLCHRIIWHGRRCCRARTPACTACPVEDLCPSSQA
>NC_018142.1|WP_014845480.1|367402_368026_+|CoA-pyrophosphatase
MSQLSGLTAALRDGAAGPLGQFGRAPDYARPAAVLILLTDEPDPAVLFTERAGGLRAHAGQISFPGGGAETGETPVATALREACEEVGLDAGLVTVLGQLPTAWVPASGYEVTPVVARWSEPLPLAPVDPGEVANVLQLRISQLSDPATRVTATVPGGYRGPGFQLGDLFIWGMTAHLLDVTLRVAGWEQSWDRDREVPVPGRFLRD
>NC_018142.1|WP_014845481.1|368434_369202_+|ABC-transporter-ATP-binding-protein
MTTAISFQNVTKDYATSKGIVRALRGLDLEIPQGVIYGLLGPNGAGKTTALEIAVGLREATGGLARTMGLDPVRENAEVRNRISIQPQNATGFDLLTGEELLDIWSALYPNPRPAEELIRLLDMSGYIDRQLRRLSGGQRQRVNLALALIGGVNVTVLDEPSTGLDPMARADLWDALRHLKQEGMTIILSTHDMEEAEVLCDHLAIIDAGAVVAEGSPSELIADAERRHQGPDRFRGLTDVFFQAAGRSFHQQNK
>NC_018142.1|WP_051014895.1|369219_370032_+|ABC-transporter-permease
MSTLSITRPLTAANQEIAMPTASVTRKLFKLHWLELTRNRAQFIFAMVFPLFMGGMFFLISTVMPSSTAANFGAMILPMSGYLALSGVALNLTAGPLVQYREQGTFRVLGTTPLSRTRFLLTHLFLRVVFAMALCAALYLLGAAIGLADWAAIPALTAASLPALLMFLAIGYWLGGVMTSSQATSSVSAFLQVGFLFISGAGIPMWLLPETFQQVISWLPPALSVDPLFWAANSPFQRHDPWLTSGITIVLAALVMLAAIRTFRWEVRSR
>NC_018142.1|WP_014845483.1|370118_371378_-|hypothetical-protein
MKTWNTVLRLSAALFLVLLPLGSCAPAGNRDNSPAPPFSLNLKDAGNSYSPFTAPTVKGSGWNLGASVSIDNSRSVHSTPFGIIIVLNTYYPLDTSSKNDDSQATKILCLDPANGSLKWARILEPASSEIGRSDTGTAQDLFRRDSSPGNPGPVVTSPNGHHLAIMVKPYLVSGSSSDVSDQRMRIVVIDTETGDATRTFEVSGLVLGQVLTNDSLVVETSQHFYPAGTGTLNVFSLTEAQAGPTSFRTDRWLVGATSDSLLVSSQNLRKYDRLPTTLTRISTSGEELGTVAGVTAVRDGSWVFRYQDPEAATAAIKAGSKDVLPKELFNIDSGAAFDITDLDVVSAGLSTGPGFLLRRLVPGENDEQKPFYVPVSWLPAAPDSRELRTDDVAWFDEGDYKKQEGRYIMRAVRMGEKPG
>NC_018142.1|WP_014845484.1|371377_373402_-|tripartite-tricarboxylate-transporter-TctB-family-protein
MAPTPDDAVTTADPPPRFVPGLRDLRLAGLGVVAASALLVIPFWGDVTLLLPTVTPHLLVLAAFPVFWLLAAWLGSRRIIPAVIVTVGSIAAAGFHCRRWWVVHEQSSIRLGLLLVMAVVSLGLGLFAVSDLLLRGIRDGMDPRPETPDDPARFRPLPRDPAPPGAVIRRLASVLCPAIALVVAVLLVHTLANPTSQVTASPPPGDLPARPTRIGTTPAWEKDVPGLLEMAAGAAGPVLFTGEGLTALNPADGSILWSYRRDKASYIRLPPLDYENPQGPRFTTSPTGRHIAFRIRSAKDLADQHRDSADKTPVYDAVTITLDTLTGQVTGEHPSNTAWRIQLSDSALLDGDTAYNLADGQRRWSIERPRRSTLEPASKSTDYSGPAGHNSFILHYARNGLLGLHSDNVLYGNLIIVSDTDPTKVSDAVSIAVDGRHPAPVVAGGWVAQFTEPIDVQDSEPDKSGQTHEIIAKGIETQAVTLDSLAGLEPKSPVALGRTTGINSFASSATGTLAAYPDYSPDTLPISDIHNRYNKPKVGAVFDPVTRTTTQASQYPGLAAAKAGIAVTADDGSGTGAIIMQPGDGSQATTIPITPGTTTMSPEALGARSPDALSQLATPDEEKDDSNIFMTAPGLTLVAFDPEAGVGYKTYIKEKEVGYVHRHVHRLYGLTGES
>NC_018142.1|WP_014845486.1|373860_375090_-|hypothetical-protein
MKLTHLLLGALLTLPLSASTQPPSGAELPVSIAEANPSTLVEAPTPTRNGWEVVVLGHRRLSSDTVSKILAATASGPVLSIDTSPRGNNDSKDRKTHPATMLVALKPEDGSVRWARIIEPATKDFSESELPLTPQVAYEQGRRSVGNSIVASPDGTRLAVPLLSHMRPADSTRISDQRTKVVVLDAATGNEVRTVEVAGMVLGHALTGDCLVVETAENYYPAGTGTLNVFPLGEPAAEPVTFRTDLWLAGATANSLLMSPQFDKEKTSFHPTGRSRTFTRISTSGEELGTVTGVSDLHPGGWLERFKDPDAAQALIAQNLDELSLAEQLEKLPRELVNADSGSVVDLTGASPRDVVTPSGWGIFLKPAIQPIEREAALWLNTTAGDQTPRKEFLSCFKEEGYAVHYAPI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018142_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_4

454863-454946

Orphan

Consensus_repeat	Method
GAGCAGCCCGTGTCGAAACCATCCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_4

>merge|NC_018142|4|454863-454946|CRISPRCasFinder
GAGCAGCCCGTGTCGAAACCATCCTGCACCAGCTGGTTGAGCCGGGCTGCGATGAAGGAGCAGCCCGTGTCGAAACCATCCTGC

>NC_018142|4|4|454863-454946|CRISPRCasFinder
GAGCAGCCCGTGTCGAAACCATCCTGC	ACCAGCTGGTTGAGCCGGGCTGCGATGAAG
GAGCAGCCCGTGTCGAAACCATCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_041696117.1\|446429_446798_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NC_018142.1\|WP_041696120.1\|456590_457994_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_018142.1\|WP_041697067.1\|459336_460131_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NC_018142.1\|WP_123823910.1\|455171_456425_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_018142.1\|WP_014845544.1\|445555_446356_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NC_018142.1\|WP_041697070.1\|463467_464496_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_018142.1\|WP_014845550.1\|452942_454004_-\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|237395
NC_018142.1\|WP_014845557.1\|460130_461039_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|376577
NC_018142.1\|WP_014845545.1\|446778_447342_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NC_018142.1\|WP_123823907.1\|461157_462510_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_042842924.1\|465570_465672_+\|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845549.1\|450145_452641_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|214361
NC_018142.1\|WP_014845551.1\|454096_454552_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845555.1\|458530_459169_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NC_018142.1\|WP_014845546.1\|447932_448592_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_018142.1\|WP_110644219.1\|454545_454836_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|316153
NC_018142.1\|WP_041696118.1\|447338_447836_+\|DUF3180-domain-containing-protein	unknown	unknown	gnl\|CDD\|378650
NC_018142.1\|WP_014845547.1\|448968_449292_+\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714
NC_018142.1\|WP_014845561.1\|464492_465275_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NC_018142.1\|WP_014845559.1\|462616_463387_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_041696117.1\|446429_446798_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	2.81276e-42
NC_018142.1\|WP_041696120.1\|456590_457994_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_018142.1\|WP_014845559.1\|462616_463387_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	9.38956e-15
NC_018142.1\|WP_123823910.1\|455171_456425_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.82224e-94
NC_018142.1\|WP_014845544.1\|445555_446356_+\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	5.14763e-111
NC_018142.1\|WP_041697070.1\|463467_464496_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NC_018142.1\|WP_014845550.1\|452942_454004_-\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|237395	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional.	1.81e-133
NC_018142.1\|WP_014845557.1\|460130_461039_+\|proline-dehydrogenase	gnl\|CDD\|376577	pfam01619, Pro_dh, Proline dehydrogenase.	7.31628e-14
NC_018142.1\|WP_014845545.1\|446778_447342_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	5.35764e-52
NC_018142.1\|WP_014845549.1\|450145_452641_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NC_018142.1\|WP_041697067.1\|459336_460131_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.9996e-25
NC_018142.1\|WP_014845555.1\|458530_459169_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	2.93605e-32
NC_018142.1\|WP_014845546.1\|447932_448592_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.90217e-05
NC_018142.1\|WP_110644219.1\|454545_454836_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	1.07417e-17
NC_018142.1\|WP_041696118.1\|447338_447836_+\|DUF3180-domain-containing-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	3.41835e-14
NC_018142.1\|WP_014845547.1\|448968_449292_+\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	5.89755e-45
NC_018142.1\|WP_014845561.1\|464492_465275_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.52124e-98

>NC_018142.1|WP_110644219.1|454545_454836_+|helix-turn-helix-domain-containing-protein
MVSNFDETIHSPNRLRICAALSAARQVEFATLEQGLGVSKSLLSKQLKVLIDAGYVTLERKPQPFGRPRTWVGLTPAGRKAYRNHVAALRKIIEEN
>NC_018142.1|WP_014845551.1|454096_454552_+|hypothetical-protein
METNSPDRESAAHLLELADDARAATMHAAALPWWLFALEGVCAGICCGALVAQAWVVAALGIGGMLVGVLLLHWRTRARGQHLGSFWVASTVILMSGFVPGLLREAAVSQPWISVGYGVFSSVVFYVVLLLDERRRNRRFAEGRFEEYDIW
>NC_018142.1|WP_014845550.1|452942_454004_-|DNA-integrity-scanning-protein-DisA
MKRDRLRQYQRRLAPGTPLRAGLDRILHGRTGALVVLGNNPKVQQVSTGGFRLDVEFTPQALRELAKLDGAIILSNDLSRIIAAGVHLVPAGDLPTAETGTRHRSADRTAQASGVPVVTVSASMSTISLFMDGDRHVVETSGQMISRANQTLATLSRFVDRLGSILHQFNALEVGEQVTIRDLVLVAQRFEMTRRLSAEAQFHIDTLGVEGRLIALQHAELVGEFTGLDEQLRTDYAHNLADPSLFTLEPLHNFSAEELLSSQLVAERIGFGESPYLETPIHTRGARLLISVGRLSEGMTTKLINRFSLQELFSVSVSELQQLEGIGSARARLIRDALLRITEAAYARPQTPV
>NC_018142.1|WP_014845549.1|450145_452641_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTDRARRVIVLAQDEAKLLNHNYIGTEHLLLGLIHEGEGVAAKALEQMGISLQAAREQVVEIMGQGQQVPSGHIPFSPRAKRVLELSLREALQMNHNYIGTEHILLGLVREGEGVAAQVLLKLGADLGRVRSTVIQLLAGYQGKEASMAGAPEAGPEKSSSQVLDQFGRNLTQAARENRLDPVIGRVSEIERVMTVLSRRTKNNPVLIGEPGVGKTAVVEGLSQAIVRGDVPETLRDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIKTRGDIMLFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHIEKDAALERRFQPIQVAEPSVALTIDILKGLRDRYEAHHRITITDEALTAAATMADRYIQDRFLPDKAIDLIDEAGARLRIQRMTAPPDLREFDEQIAKLKMEKDAAIDAQDFETAARLRDDVTRIQAQRAEKEEAWKQGDSDIPAVVGEEEIAVVLSSSTGIPVFKLTEEESARLLRMEQELGKRYIGQEDAVKALARSIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVMTTNLGSRDISKGVNLGFSRAGDEASSYEKMKAKVSDELKQHFRPEFLNRVDEIVVFHQLTQSDIERIVDLMVAQIESRLADRDMGIELTPAAKTLVAKRGFDPVLGARPLRRALQRDIEDVLAEKILFGELVAGQIVQVDVAEEGAELPFKFTGISKTPPALPAEAGPVE
>NC_018142.1|WP_014845547.1|448968_449292_+|Lsr2-family-protein
MAREVQIFLKDDIDGSVADRNVTFALDGVEYEIDLSEANITKLVQALEPWTGSARRVRKSSKRNTQRRSNDGPSTNDVRNWARAQGHEVSDRGRIPTAIMAAYEAAH
>NC_018142.1|WP_014845546.1|447932_448592_+|hypothetical-protein
MSGRHVAKSSSERSIAIGILSVGSLVVLGSLFGGIWVVRAGAVVALLMAVAAVSVAWMELKRERAEHREEIKRQVAIRVEQAERHHAESVAMIDRFNERAQNLKSMIAKLRRQLGAANSELSTMRGNSAWLRGEVAERQSRIDALEAKIAELEERLVAEEEARQEIEESSNIVELPRYAKGEEAIELWISDDEHPTMVDLAKLNMAHYDEPLLPVRKEA
>NC_018142.1|WP_041696118.1|447338_447836_+|DUF3180-domain-containing-protein
MTRKPELTPTTGRQVVVATLAGAVVGWMILSIFDLLNAFPPVAPWSLSVLLVLLGVAAIVYARALPKRLEQRRVPALEAVRAMVMAKSLIATGALLAGGHAVYVGRWVALMAAELPATRVWHGLATIVAAAFCAWGGWVLERACMIDGDGSDAESGEDQEASEAA
>NC_018142.1|WP_014845545.1|446778_447342_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSNGPFDIDVDTLGNMRPISKVVFSFGSNQGDSPAILTRAVEVLAETPDLIVVDVSPVYQTPFQGDGPEQDDYLNLVVLAESTLEPMTLLDRAFAIEESFGRERTVPNGPRTLDIDIIMVGKRTSEEDIELPHPRAHERAFVLVPWLDIDPTGEIAGAGPIAELVKHVDRTGVIRRDDIVIANPGRR
>NC_018142.1|WP_041696117.1|446429_446798_+|dihydroneopterin-aldolase
MDAISITGLTATGFHGVFPEERLNGQRFVVDVELGLHVETRSDELSDTVDYAGIADLIRAEIEGEPCRLIETLAGRIADRCLSNSLVQQVRVTVHKPQAPVPHELSDLSVTITRSSHEQRSL
>NC_018142.1|WP_014845544.1|445555_446356_+|dihydropteroate-synthase
MTIVMGVLNVTPDSFSDGGRHDDAETAVAHGRLLASQGAGIVDVGGESTRPGAARVPEAEEMARVIPVIAALAAHGITCSVDTMRASVARAAVAAGARIVNDVSGGLADPGMLGAVADLGVDYVAMHWRGHSEVMQQHTDYTDVVADVAAELAARRDAALAAGIAAERIILDPGIGFAKTSEQNWQLLRGLDVLQAMGHRLLVGVSRKRFLGELLDGRPATDRDAATAAVTTWCSLHGIWAVRTHEVPAQRDAARVGWRLGARAAG
>NC_018142.1|WP_123823910.1|455171_456425_+|IS30-family-transposase
MRLDEQRRGLMLVLLGQGRSCHSIARELGGSPSTVRKVAVEAGMVLSRGRVGGVGGLNEHRYSPRRRRRRLRENPVLEVGEPAQWRDGQGRLTLAGRILIEVRVGDRVPPSQIAAELGVHRSTVSREMKRCPGRYRAQPAQRLADWSRRRPKDRKLVLGTPLWDEVVTRLNNKHSPQQIAHRLRQDFPEDPTMWVSHETIYQALYVQAAGGLRHELTVEKALRSGRTTRGPRSRLSGRGSRSWIGEATITNRPAEVEDRAVPGHWEGDLIIGKGGTSALVTLNERATRYTMIQRVTSRDSTTVTDALIQMAHRLPATLMTTLTWDQGIEMAQHARFTLASGCQAYFCDPHSPWQRPTNENSNGLIRDFFPKGTDFTHITDTQVQHAEDLLNTRPRRVLDWATPAEKMEQLLNVAHTT
>NC_018142.1|WP_041696120.1|456590_457994_+|DNA-repair-protein-RadA
MAKQDSFQCTECGWTTARWVGRCGECQAWGSVVERGAPKLTKVAAAAPSRSAQRISQVPTDDARRKRTGIEELDRVLGDGLVPGAVVLLAGEPGVGKSTLLIDVAAKWAGTGETTLYISGEESASQVKLRAARTGAVHDDLFLASENDLATVLGHVEEVSPSLLIVDSVQTISATGADGTPGGPAQVREVTAALARVAKNRNMAVLIVGHVTKDGSIAGPRTMEHLVDVVLSFEGDRHSGFRMVRATKNRFGPADEVGCFEMSETGIVEVPDPSGLFTTVRSAPVPGTCVTVTLQGRRPLLAEVQALVAPTPGNSPKRATHGLDSSRIAMVLAVLERKARLPLSQSDVYTSTVGGAKVTDPSVDLAVAVAVASAALDRQHPQRLLALGEVGLAGDLRRVPGTERRLAEAARLGFELALVPRGSRDVTVKVPRLAGLKVVEVDTLADALGILDLRRPASAPPRDEETT
>NC_018142.1|WP_014845555.1|458530_459169_-|VOC-family-protein
MHVDHVIFASGPRGIKADVAHLAGRLGADFKEGGFHPRFGTRNYIIPLADSRYLEVVEVLDHPAAAKAPFGQAVRARSEMGGGWLGWAVSVDDIAPFEERLERSAVPGSRQFPDGRHLEWRQLGIKGLMADPQLPFFLQWVSNKQLRPSFLTSDLRLSGIQISGSANRLSEWLGVPVNDSLDGIHLDLIAPNGHPGITQVTFESPTKGIVVI
>NC_018142.1|WP_041697067.1|459336_460131_+|sugar-phosphate-isomerase/epimerase
MLLSTTSVYPDSTASAFDFAAEVGFDGVELMVGVDQVSLDEEAISELSDRYRVPVRSLHAPTLLITQRAWGSDPWGKLRRSAEAARRLGADIVVVHPPFRWQRDYGEGFAQGIRELNRASGVTFAVENMYPWRTPAGSFAAYLPGWDPTDLDYDHLTLDLSHASTAQQRSLDLVERWGDRLAHVHLTDGKGSFKDDHLLPGEGDQDAWAVVRELGRRGFEGHIVLEASTRRARTGGERAELLRSALENTRENLRLGAGKAVRRD
>NC_018142.1|WP_014845557.1|460130_461039_+|proline-dehydrogenase
MRRSGDWVRWLVLGSWVARRAARDPGVRELASNYVAGQEVGDAIKVASRLRRQGLRLGFSYLSADHDPEDTRMVMDELLERLQGASDGSEVAVKPSSLGLKESAGRAGEVLGELCATAERRGAHVTLEMQWPADYDDVMDLYRRVREDHPMLGITLPANLLRVETECRRLGAEGARVRLCVGSYPAGRAVSHVTEHDKALALVRCLRILMESRTYPMLATHDPRIIELAQELALRNGRGPESFEYQMFHGVRPLEQRRLADIGLRCRTYIPFGPGWYGYLATRMAARPRILFSYARALLDKR
>NC_018142.1|WP_123823907.1|461157_462510_+|hypothetical-protein
MGSGNAGGGGGGVDGRPRFSWPFFLAALGVGAVLVGMVLALSQPPGTGGKPESSTASGCSATPDVVAPSGGSAQWQQEWSFEAGEGKWGGEPGQDRANFWNAYAHGDCLIVISGWKPGEKTRLTGYRIAEDGPKRLWSIEEEQIFAPDANVWWGGKLVLGNRLLDPTTGALGDGPWSGVPAALSNDFALVCKLSLRTVCSGWDWNGGAPTKRWTQEYDGRLSVLTHKGLAGNTDKGAALAELSTDPSAKKAPIVAVSLADGSLLAEWPAVANNQKDQYIPADDGWIHVAPESAEASAVSLTGERTSFPLTGSNAALLVAEKGKPTIEQFRAAYETGDVSWARVVIDCPSSRQCSLNGNPFLLPKHMAYRGVPGRAGYQLAWSMSSDGRNLFMRPHGLDIRRAVCLVDIPGGKDIPLTEGSVTNRGTVAPLMRDDLVIAIEGSSLVGYRPR
>NC_018142.1|WP_014845559.1|462616_463387_+|CPBP-family-intramembrane-metalloprotease
MNPGPEVRRRLHLEMLVVLGISLGQSAVYALLSLINKLTQEVALNRQTTSINASKTPDRPWLDLAYQVANLVFPLVPVALVLYLLWVYQRPHGGPLRSMGFDLRRPGFDLGVGSAVFVGIGAGGLVLYYAFRELGYNTSVSPANLAAAWWTVPMLLLLAVKNAVLEEVVMVGYLFTRWRQSGGGILAVLAGSALIRGAYHLYQGFGGFVGNVVMGLLFGWLYLRTRRVMPLVVVHSLLDIFAFVGYALLKPHIPWL
>NC_018142.1|WP_041697070.1|463467_464496_+|aspartate-semialdehyde-dehydrogenase
MGPMRVGVFGATGQVGGVMRKLLAERNYPVDEIRYFASERSAGKVLPWGDREVVVEDIAKADFHGIDVALFSAGGGTSKQWAPEVARAGATVIDNSSAWRMDPRVPLIVSQVNPEDVDKAELGIIANPNCTTMAAMPVMKPLHDAAGLEAMQITTFQAVSGSGISGVRTLAEQIRQIDDPQVLAHDGSVLAPSDLGPYVKPIAFNALPQAGSFVDDGEGETDEEKKLRNESRKILHIPGLLVAGTCVRVPVFTGHSLSIHARFSRPITPDEARSLLTGAPGVELSEIPTPLEAAGKDPSYVGRIRRDQSVEDGTGLVLFVSNDNLRKGAALNAIQVAELLVR
>NC_018142.1|WP_014845561.1|464492_465275_+|pyrroline-5-carboxylate-reductase
MIAVIGAGAMGEALMAGWIAAGTSPDEIVAVDQDTDRLARLRERRGVRSVEVSGVSVAEVVVVAVKPHHVATALTDIAPHLGPEAVVVSVAAGVTLARLTEVLPEGQPVIRVMPNTPALVGRGVAGLAAGPTVTPEQIARVVAMMEAVGICVELPESQFDALTAISGSGPAYLFLIAEAMIEAGVHQGLGRDVATRLVNGTFAGAAAMLEGVDASATELRERVTSPAGTTAAALRVLDERAVRAAFLAAVEACARRSSEL
>NC_018142.1|WP_042842924.1|465570_465672_+|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMAKKKHRKLLKRTRIQRRRAGK

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Crispr_ID: NC_018142_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_5

651452-653011

Unclear

Consensus_repeat	Method
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	PILER-CR
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CRISPRCasFinder
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CRT

21 spacers

cas2,cas1,cas8u1,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NC_018142_5

>merge|NC_018142|5|651452-653011|PILER-CR,CRISPRCasFinder,CRT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAACCCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCTGTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAGATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGTGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGTCCGACCATTCAATCCGTATCCACCGCCTAGAAACCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCATCATCGGGGAACTCGACCTGGTCAAAGTCGACGGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGTACTCGGCTACCCCCGAGCGCCGAAAGGCCCGCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGTTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGAAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGAGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCTGTCGCAATGGGGCCTGACCTTTGAGGTCAGGAAAAGCACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTAGTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAGGGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTTGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

>NC_018142|5|1|651452-653011|PILER-CR
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	CCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAG	ATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT
GTCGCAATGGGGCCTGACCTTTGAGGTCAGGAAAAG	CACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA
GTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAG	GGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

>NC_018142|5|5|651452-653011|CRISPRCasFinder
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	CCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAG	ATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT
GTCGCAATGGGGCCTGACCTTTGAGGTCAGGAAAAG	CACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA
GTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAG	GGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

>NC_018142|5|1|651452-653011|CRT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	CCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAG	ATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT
GTCGCAATGGGGCCTGACCTTTGAGGTCAGGAAAAG	CACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA
GTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAG	GGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014845739.1\|666215_667145_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|226119
NC_018142.1\|WP_014845738.1\|663406_666199_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NC_018142.1\|WP_041696165.1\|657253_660121_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NC_018142.1\|WP_014845722.1\|644378_644951_+\|DUF3060-domain-containing-protein	unknown	unknown	gnl\|CDD\|371435
NC_018142.1\|WP_014845724.1\|645639_646509_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_018142.1\|WP_073970121.1\|660117_661545_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NC_018142.1\|WP_041696164.1\|654597_656274_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_018142.1\|WP_014845733.1\|654310_654601_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_018142.1\|WP_014845726.1\|647564_648191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236555
NC_018142.1\|WP_014845727.1\|648347_649118_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_018142.1\|WP_110644283.1\|644980_645643_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_018142.1\|WP_014845720.1\|642352_643402_-\|lipoate--protein-ligase-A	unknown	unknown	gnl\|CDD\|223173
NC_018142.1\|WP_014845719.1\|640271_642203_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_018142.1\|WP_123823881.1\|656270_657257_-\|hypothetical-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	unknown
NC_018142.1\|WP_110644247.1\|653038_654094_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_018142.1\|WP_014845736.1\|661546_662692_-\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NC_018142.1\|WP_014845728.1\|649117_649981_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_018142.1\|WP_041696161.1\|643562_644237_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014845729.1\|649984_650842_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270248
NC_018142.1\|WP_014845737.1\|662864_663320_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014845739.1\|666215_667145_-\|trypsin-like-serine-protease	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	1.87857e-22
NC_018142.1\|WP_014845738.1\|663406_666199_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_018142.1\|WP_041696165.1\|657253_660121_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.03279e-103
NC_018142.1\|WP_014845722.1\|644378_644951_+\|DUF3060-domain-containing-protein	gnl\|CDD\|371435	pfam11259, DUF3060, Protein of unknown function (DUF3060). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.	6.11124e-06
NC_018142.1\|WP_014845724.1\|645639_646509_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.72202e-36
NC_018142.1\|WP_041696164.1\|654597_656274_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	4.42051e-109
NC_018142.1\|WP_014845733.1\|654310_654601_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	2.22369e-17
NC_018142.1\|WP_014845726.1\|647564_648191_-\|hypothetical-protein	gnl\|CDD\|236555	PRK09537, pylS, pyrrolysine--tRNA(Pyl) ligase.	0.00466032
NC_018142.1\|WP_014845727.1\|648347_649118_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.61649e-123
NC_018142.1\|WP_110644283.1\|644980_645643_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.41835e-67
NC_018142.1\|WP_014845720.1\|642352_643402_-\|lipoate--protein-ligase-A	gnl\|CDD\|223173	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].	1.45771e-59
NC_018142.1\|WP_014845719.1\|640271_642203_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	6.08332e-07
NC_018142.1\|WP_110644247.1\|653038_654094_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.04674e-16
NC_018142.1\|WP_014845736.1\|661546_662692_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.42192e-56
NC_018142.1\|WP_014845728.1\|649117_649981_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.92488e-52
NC_018142.1\|WP_073970121.1\|660117_661545_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.35454e-63
NC_018142.1\|WP_014845729.1\|649984_650842_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	8.3668e-51
NC_018142.1\|WP_014845737.1\|662864_663320_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.31671e-15

>NC_018142.1|WP_014845729.1|649984_650842_-|amino-acid-ABC-transporter-substrate-binding-protein
MALPLSRRAALFALGSTVLLGSCTIASDGKNTPNSASASEGALKTVTPGKLTIATGEPAYSPWVENNDPASGKGFEAAVAYAVAGKLGFANADVVWVRSTFDAAVAPGAKDWDFNLQQFSITEERRNAVDFSSPYYTTAQAVVTLKGSPVSGATTVAELKGALLGAQTGTTSHRMLTETVAPTTAPSVFNNSQDTVQALKGGQVDAIVVDLPTALYLVASELDDGVVVGQFADTSGGDQFGLVLPKGSALTAAVTGAVDALRADGTLDSLTKTWLSETVNVPVLS
>NC_018142.1|WP_014845728.1|649117_649981_-|amino-acid-ABC-transporter-permease
MNETVDDFEVVSDIELGRRRYRRRQTIRSVLISAVSTVVFAVVIWLVLENSPGWQVTRETFFSAHYFAATLPEVAVGLWLNVQILFFAVIGVAVLAVILAVLRSLRGPVFFPLRFFAAAYTDLFRGMPFLIVLYLIGFGIPALNPTTRIPAALLGTVALVLTYSSYVAEVLRAGLEAVHPSQRFAARSLGLSHGQTLRYVVIPQAIRKVTPALMNDFISMQKDVGLISVLGAVDAIRAAQIQQATTYNFTSYVVAGLLFVAFSWPFIRLSDWYTARLREREQTGGTV
>NC_018142.1|WP_014845727.1|648347_649118_-|amino-acid-ABC-transporter-ATP-binding-protein
MARLKPTRADNHAGPVLEMQGVVKRFGRNVVLRGLDLSVGSHEVVVLLGASGSGKSTLLRTANLLERVDDGRIFLAGTDITDPRIDVDAVRARIGVVFQHYNLFPHLSVLDNITLAARKVHGVERGVAEARGRELLERIGLSDKARAFPDRLSGGQQQRVAIVRAIATNPELLLLDEITSALDPVLVGEVLDLVLDLKRTGSTILMATHEIGFARSAADRVVFLERGQIIEQGPPERVIDDPQEPATKDFLARVLR
>NC_018142.1|WP_014845726.1|647564_648191_-|hypothetical-protein
MKHHFGGAAAVAVAVVLLLSSCGGQSPRPGSSDSESWGTAPQQPPRTTTSSSPPVPSPSKPQPSETFTPEQLEAANVLIEYYRIRDAVVSDLTADPQPLMDITIGQSREIDMNLLTGFRERGQVQKGTTVVHITGASEPVEFDGVRSVDVQMCTDAAKTEMIDSQTGKSVREVGQWSPYLQWNVTVVETETGWKFGDATNESVGWCPL
>NC_018142.1|WP_014845724.1|645639_646509_+|HAMP-domain-containing-histidine-kinase
MRKPVWVWAVAVVGALAAAGMRIAGETQMFKVGVELWALPLLAGLLVPAVVMLAGWRRGRNARAVKEAVEGVKAEAREAHRTFVGRLDHELKNPLMALRVGLGEVRDPVLAESMRVQVDRLASLVAELRKISEIDSYPVADEPVDVSEVVSEVIETVVPGDREMVVAFPRAPRPLPPVRGDRDLVFLAIYNVVSNAVKYSSPGATLEVRGMEERGYVVVDVSDTGRGIPASEVDQVWGELARSKEVRHIPGNGLGLPMVAAVLRRLGGSCELSSIQGRGTTVRMRLPLL
>NC_018142.1|WP_110644283.1|644980_645643_+|response-regulator-transcription-factor
MIRDHLARTLERAGFVAFTAADGVAALDVVGKQHPDLIVLDVLMPRADGREVLARLRRGGDWTPVILLTGVGQSGTRADALEKGADDYLNKPFDPAELVARIRAVLRRGQLGRTLTHASRIRGGGLELDRLAKTVTARGQAVQLTPKALALLEYLMVHHGETFSRDHLLEQVWGVEFAITTRAVDHRVAELRKVLGARGLEVIDTVQGVGYRFHPEVRAA
>NC_018142.1|WP_014845722.1|644378_644951_+|DUF3060-domain-containing-protein
MKTNLIRIALAAAAVTALGLSACSAGAENKPAGNTQAVSTTQDANKNTPSPGNVATASNGGDANTTASSDGSGNKSGSKDTGDSDDKPCVGNPNVSSSNGVVTLSGHCDTINITGSGNQVTFESADKVILSGGSNVVVGQELDDVEITSSGNSVTVADDLDEVTVSGSGNTVSSQGVEKKKDTGSGNTIS
>NC_018142.1|WP_041696161.1|643562_644237_+|hypothetical-protein
MKTILTRTAIAALAIASFGFAACAAGVEAKPQDAPGNAGSSQQAPAQTDSPTPQQTKSEDSSSSETKNGSGGVTAPGVTVGPGGVKAPGVTVGPGGVKAPGVTAGSSGVTASAGSVRSADCEKDSVVEETGAVVRFSGHCESIVIKSTGAVVEYDQVDKMVIEGTGIAVKGGDIKSLKITGDGAGVVSSGDVGEVTISGTGNAVTVSGTVGKVKDTGIGNAVNS
>NC_018142.1|WP_014845720.1|642352_643402_-|lipoate--protein-ligase-A
MHGEYKVPDGKLVAVDLDVVDGKLSQVVVSGDFFLEPDESLDDIVRALTGLPHTSSVADLAAAINSCLPKDARLLGFSPEAVGIAVRRALGHATNWDDHTFDVIGPVTLDPRLHVALDEVLAARMARGEIGPSLRIWDWDQPLVVIGSFQSYRNEIDEEGRERHGINVVRRITGGGAMFMEPGNCVTYSLLVPGSLVEGLSFERSYEFLDQWVMGALAELGVMARYVPLNDIASDKGKIAGAAQRRLTSGVVLHHVTMAYDIDADKMLQVLRIGREKLSDKGTKSANKRVDPLRSQTQLPRDQIIDSFLKHFESRYSTRRRNYTDDELAAAAELVEKKFATPEWTRRIP
>NC_018142.1|WP_014845719.1|640271_642203_-|hypothetical-protein
MVKTRNGKTNNQESAPAPLPKREVPGGAAKSATSREVVHDKDALYPAPREGVPFKSAWPESRENAFPPVPSPFAPPPTLWSGLVGNAPPQRSLSTIPKRPDTGAKSSSPEEADSPDGPITTGHRAILSPTDAPAAIPAHHPAHQADDDEDEPRRGTLTDATPAYVSSSTPHSPSQPTPPPGKNGKNGGTGPDEATKPAGTPDADAGGMQPDQTPSPGEPPERAAEPAASGESPETSGDDDLVVNATTYSQIRSISRGHWGLTFLSSLGILLSTGALTIIASSIQQFTDFGGLPNSAALLGQITRTWSQLATDGFAQLLAIMLPVFLALLTTLYIAFSIQGNHSPDRDDRVTNEQVALQQAREGIILLLSGLTGMAITLTIPWLTERAPLLLLLPAGGVITCGFVIAIRTRSLENERMRLARSKQQEEVLSRTNAEATETRLRKQGRDRERQENNRDRREKKRDRNRASRQALLRHTRKRLLARHFIVTTLLAILSPAPLTWHLAHNVTTVWEVLLFHIATVVWLRFFWGYTFTLMRKDVLAEAMKPGNNRLARLGAWLVRTAFELLTTLIALGVIVLILVRLPGLAELPLIVVCTICWHLVLVVIRWLYQQCSRTGRGIRQLDRRLKLVRLRREVAELRAGIS
>NC_018142.1|WP_110644247.1|653038_654094_-|IS630-family-transposase
MPLRDGDQAILEKVVRSSATTAGAAQRARIVLLASQGVANALISELVGVSRPTVNLWRGRYLEHGLEGLVDIPRPGRPKVVDDAAIITATLRPPPKRLGVTHWSSRLLAPRLGVHKSTVTKAWKKYGIRPWKADTFKFSTDPELEAKVTDIVGMYLNPPANAIVLCVDEKSQIQALNRTQKVLPMQPGHNEQRSHDYVRHGTTTLFAALEIATGKVTGLCKDRHRHQEFLGFLKHVARAYPEQELHLVMDNYAAHKRVEVRNWLTANPRIKVHFTPTSGSWLNLVEVWFGIIERQAIRRGTFVSVRELIGKIREFINSWNNRKHPFIWTKTPDEILAKINRKRKLTSTPRH
>NC_018142.1|WP_014845733.1|654310_654601_-|CRISPR-associated-endonuclease-Cas2
MKTRRRRYLVAYDIREPGRLRRICKLMEAHGERLQYSVFICDLNRSELIHLRAAGEKIMNLAVDSVVIVDLGEIGEDRFIFVGHHEDLPTRGPQIV
>NC_018142.1|WP_041696164.1|654597_656274_-|CRISPR-associated-endonuclease-Cas4/Cas1
MTVRPDIPGLPETVPARMLNEFVYCPRLFHLEWVQSRFTTSDDVEEGRYLHRVVDEESGDLPDKSEAWGGRTARSVSLSSPGLGLVAKLDLVEDGGNGSVVPVDYKKGHPDKTGAPWPNDRTQLLIQALLLKEAGYVVERAEIWYAETRRRVVIRIDETALSEITETLKDAWRVAADPKPPPPLRNSPKCPRCSLVGICLPDELTSLKIPPRERRPLKRLMAPILEGRPVYVTMQGSTVGIRNDRLEVRLDGELQASYRLIDVSQLCVFGNVTVSSQAVRELMSNDLPILWFTYGGWFAGMAEGLPGKNVDLRIAQFGASEQKRLEAARNMISGKIRNSRTLMRRNSRTEAERIGNQLKELAIQATKAASPGQLLGIEGTAARLYFASFPAMIGDNTRIDVSDFHENGRSRRPPPDPLNALLSFCYALLVKDLTVALASVGFDPYLGMFHKPRFGRPALALDLAEEFRPLVAESVVVQVLNNREVGPHDFRTRAGGCMLKPSGRKAVLRAYERRLDQEITHPQFGYKATYRRIMDIQARVLGAFLTGELDQYTAMVTR
>NC_018142.1|WP_123823881.1|656270_657257_-|hypothetical-protein
MMNHVTLPALLGDSPLAILAAIGTLRLIHDFTDNNARLHWNTTDHRPVLTSSLATVDEVAEALVDIVRTMPEGVSVPGGPMGFPPPGEAPDKLRVPQGKLHSFAENLFPEISETESATMFSWLTSLITDLAATSEKSDSGSKNQKSNSQKRCSVSQFIASSGKQSIATMLKKPLEHVQKHPEYLHEALTGWVRVPGVTGEYLDHRAAWKAIDDGRGRTGRMRGVPGATWLALMSYPIWTTTAAGKKPRTSGWHLVGKGRRSIQELRLPLWVEPLGPLAIKALVEHPELDGDLDVPLNQKIRLLGIFHVCRARRAPSEHSAGLLIPAQR
>NC_018142.1|WP_041696165.1|657253_660121_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MIAGDFDLFMEELHGHRPFPWQSDVVADMLRAGTWPSLVDVPTGLGKTSMLDAAVFVLAMCAGGEAASGLGRRRIFLVVDRRIVVDQAELHGKRIAKALETASPGSVSEEVARRLRGLSGSSDGPVLPVVKMRGGATWDAAWLPLPDLPAIVTGTVDQVGSRLFFRGYGVSARRHPIDAALVGTDSVIMIDEAHLAQALTASLEATSSLDSSQVLGLPQTSVVHLSATSTGRPEGWTTSFDEDAHLDAPTARARLAAAKTLTFVDTTKQQVVRDIAAHAAEAVTGTDSRVLVVCNTVDRAREVHNRLLRPKGLPSGTEVLLLMGRSRPVDREAITAKVTELFGADREEKPGSAVLVATQTVEVGIDLDATALITETAPWDALVQRIGRVNRRGVLPAADVVVVEDNDPKPPVYGNVKVHTADFLRSRLKAPGTMDVSPLALRHMDVPAELTAEAPLLPLLLPAQLDAWARTSPAPSVDPPLDPYLHGIDTSVAPVTVAWRDGLRNAWNETLPADEVGGAIDSLPVRAEECVAIPLGALRRWLCDAKPLPVGDTEDYDDFDDIPFGDDSESTVLRRVDGGSGPSTWAWVSGESLRPGDVVVVPTDSGGLDQFGWAPTSTDKVSDVSELATCRRGRAALRLDPGLPDRLGIPASTDFQDLVRDWRNCDDPDDREEFSSGIVSAVLAWLARHPDPESSSAWTSDDLATLRAQLAGNIVLTQTTEASSPILRVVSPETSWLNADDGNSDETSHLNRRVALATHMEAVGARADGVARRLGLPEPVRQTVTDAARWHDLGKVDQRFQAMLFGGDPIRAELADEPLAKSGMPPGDRQQYRRARQLSGLPQGARHEAWSEVLVAEYLAGLTEPYPGDPELLHHLVASHHGHARPFLPPVLDTGEHTLEAVVDGIQVVSALPTSVRLSDAERFSRLNARYGRWGLALLEAIVRCADMTVSSEGS
>NC_018142.1|WP_073970121.1|660117_661545_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MPVCLDICLMSERYEAGDGEDPRAPEWPPHPARVFSALRSVAESDEIAPLYEFEQLPPPLIHASAFAPCSISRSFVVTNARFNGEKTKSGKIKTGNQNHPARTSDLMKRIRSFPPDPRIQFVWPDDRDLSDEALAGLDALARRVPYLGRSTSPVMLAFRRVADFRPLPGLSTFEPTDHDRAECNIRVPFPGYLDELNALHELDQSSWQASRSHARQPYRLVRDESDAVAPTVVESPYPDLVILRFVDHRPPGNLVGLFTAALRAKVMSQTKNPLPPALHGHGFDGHPHVAYLGLPFAGFPHADGHLRALAVAIPGLDRAERRRILRGILGTDPDRIVDLQVPGFRRVFGLRYSPDEPLPASATAARWTRPARSWVSVTPLVLDRYPKKGDLAPAVVRSIQQAGLPAPVTVELSTQPLTPGAAHLTPKELPLRTRGRLYRHVRMTFEHPVTGPVLAGAGRYFGVGLFAPEREGADG
>NC_018142.1|WP_014845736.1|661546_662692_-|type-I-U-CRISPR-associated-protein-Cas7
MTTLSLGSLQDKIRDPEFALARINATYQPGGGPGSRLFPPTFPTSRSDDSPYLMEERTCDGSSRRAVVLDQVPSQANRCEEALKTARQAGKIRLPLLRLTHDGAAKAVITGLDAPHRAFDAYWRDSLLDGEKFDRTPVGKALQATSLEDATALLQYDPATLVYGGWNSHRKGRQAKFPRFYSSEVVGWDPVVGTRKASRMDPLNLTGARNGDGDEWTYSPAAAKNAKARLSEIGHGNIAPNPAHGGVTVTEVTRFSTLSLTAVRRIRFGSLGVNTQFAASTLLVALALLGDRLAFGGAGIWLRSGCDLVVEAETLEWIGRGGVVEPFSLSIGEAVSLYDEALEAAIESGVPMHLETIELTPSKALAAAIDFTVTKAESSGE
>NC_018142.1|WP_014845737.1|662864_663320_-|MarR-family-transcriptional-regulator
MSTDADETVADLHRLFTGLSRLASRMRLRNAIHPGIRNLAQTDAWLLSHLAATGPARMSALAEWQAVDRSTMTAQVKRLERAGLARRHTDPTDRRASIVTLTEDGEAACSEIRREASAFFSGVLSDWTPRQRRELIESMTRLSTALEEHLN
>NC_018142.1|WP_014845738.1|663406_666199_+|cation-translocating-P-type-ATPase
MTTSPALQTADEALSAAGVDPGTGLSSVEAASRLVSHGPNELRSQPREAAWRRFLKQFADPLVYLLFGAMVISLAAWFLEGASGLPIDVVVILLIVLANAVIGFVQENRAADAVAALADMTAARATVLRDGKLATVPAADLVPGDVLVLGEGDAVAADARLINASSLQVQEASLTGESEAVTKTVTPLPELGSLGDRHNMVFKGTAVARGVGRAVVTGTGMDTEMGRIATLLDETADEPSPLQREIAQISRTLGVLVIGIAVVVMIVVAAVNGVSSFHEAVDILLLGVSLAVAAVPEGLPAILSLVLAIGVQAMARRNAVMKDLHSVETLGSVSVIASDKTGTLTKNEMTIREIVTPSGRVELTGTGYEPVGAAVITGDEARTRAEAERTLAAGALANNAQLAKVNGTWEVQGDPTEAAFLVAQHKLEGVSERIGAWERIGEVPFTSERKMMSVLGRRTTDEHVRLFAKGAPDVLLERCTAELVGDDVVPLSDERRGRIEADIERLSAEGYRTLGVARRRALEQDPATFTEDAEHDLVHLGVVAIIDPPRPEAVEAIAEAHRAGIRTVMITGDHPVTAARIAADLGITEEASRALTGREIESMDEEELGRAVRDVDVYARVSPEHKLRIVDALQAGGQVVSMTGDGVNDAPALKSADIGIAMGITGTEVTKEAGEMILGDDNYSTIVAAVRQGRGIFDNIKKFMRYLLSSNMGEVATVFLAVLLGGLIGLADPANPAAAVVPLLATQILWINLVTDSGPALAMGVDPETDDVMGRGPRKLTDRIIDTHMWQRIIGVGLVMGLLALLIYDLTLPGGLVGGLEDLATPDSQFAVARTTVFTALVFMQLFNALNSRSDTGSAFTHMLSNAWLWGSVALVTVLQVLVVEVPFLQSAFGTAPLDWIHWAVAVGAGAAVLLYEEVVKLLRRTFGAP
>NC_018142.1|WP_014845739.1|666215_667145_-|trypsin-like-serine-protease
MKKIRNSITSAAGAALLAAALLATSSPALQAAADDDPAPNPAEVSPVGIDSSGQSLTWQPDDAPASSGDSVPGYKPDSIESAPSSIIGEDERVRLTDTTAYPNSAIVYISKGGKPYCTGWMISADTLVTAGHCVYSYERQEWTSGLEFSPGANGPERPFETATATQKWTDVAWVKNNDPRLDWGLVKLDKPLGDRTGWFGLTWRSEDYKDIGVELRGYPYDKAPGELWGMGGTVTESRGNQLCYLMDTFPAQSGSPLYMSDGAFAIGIHAYGTVRGQQQPGRECPQEYNAGTRITKGLYELFVDLKSRR

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Crispr_ID: NC_018142_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_6

694006-694116

Orphan

Consensus_repeat	Method
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_6

>merge|NC_018142|6|694006-694116|CRISPRCasFinder
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGGTCGAGACCGCCATCAAGGTGGCCCGCAAGTGGGGGCTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG

>NC_018142|6|6|694006-694116|CRISPRCasFinder
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG	TCGAGACCGCCATCAAGGTGGCCCGCAAGTGGGGG
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_051015113.1\|701726_702950_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NC_018142.1\|WP_014845752.1\|686273_687278_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|183489
NC_018142.1\|WP_014845758.1\|697163_698519_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199838
NC_018142.1\|WP_014845753.1\|687303_688905_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176200
NC_018142.1\|WP_014845760.1\|700133_701516_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NC_018142.1\|WP_014845764.1\|704731_705199_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370773
NC_018142.1\|WP_041696178.1\|698809_699946_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NC_018142.1\|WP_014845756.1\|694152_695853_-\|dihydroxyacetone-kinase-family-protein	unknown	unknown	gnl\|CDD\|237723
NC_018142.1\|WP_014845762.1\|702970_703348_+\|6-O-methylguanine-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|119438
NC_018142.1\|WP_014845763.1\|703330_704647_-\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NC_018142.1\|WP_041696172.1\|684946_686251_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213993
NC_018142.1\|WP_041697136.1\|696011_697055_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176197
NC_018142.1\|WP_014845750.1\|681969_684429_+\|alpha-ketoacid-dehydrogenase-subunit-alpha/beta	unknown	unknown	gnl\|CDD\|223101
NC_018142.1\|WP_041696176.1\|689683_693505_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227922
NC_018142.1\|WP_014845749.1\|680574_681942_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NC_018142.1\|WP_014845748.1\|679207_680563_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NC_018142.1\|WP_014845747.1\|678444_679197_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_018142.1\|WP_014845745.1\|675434_676178_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|224482
NC_018142.1\|WP_014845765.1\|705352_706186_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NC_018142.1\|WP_110644284.1\|676181_677963_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133043

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_051015113.1\|701726_702950_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	4.27993e-174
NC_018142.1\|WP_014845752.1\|686273_687278_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|183489	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional.	3.59883e-73
NC_018142.1\|WP_014845758.1\|697163_698519_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199838	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase. This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.	0.000103009
NC_018142.1\|WP_014845753.1\|687303_688905_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176200	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	1.25311e-30
NC_018142.1\|WP_014845760.1\|700133_701516_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	1.81092e-125
NC_018142.1\|WP_014845764.1\|704731_705199_-\|hypothetical-protein	gnl\|CDD\|370773	pfam09991, DUF2232, Predicted membrane protein (DUF2232). This family of bacterial proteins are multi-pass membrane proteins with up to 10 (2 x 4/5) transmembrane regions. The exact function of this potential pore molecule is not known, but in many instances it is associated with ABC-transporter-like domains, implying that it is part of a secretion system that uses energy.	0.00213062
NC_018142.1\|WP_041696178.1\|698809_699946_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	5.06357e-19
NC_018142.1\|WP_014845756.1\|694152_695853_-\|dihydroxyacetone-kinase-family-protein	gnl\|CDD\|237723	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional.	0
NC_018142.1\|WP_014845762.1\|702970_703348_+\|6-O-methylguanine-DNA-methyltransferase	gnl\|CDD\|119438	cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of the C-terminal domain, suggesting an important structural role for the N-terminal domain in orienting the C-terminal domain for proper catalysis. Some ATase C-terminal domain homologs are either single-domain proteins that lack an N-terminal domain, or have a tryptophan substituted in place of the acceptor cysteine (i.e. the motif PCHR is replaced by PWHR). ATase null mutant mice are viable, fertile, and have a normal lifespan.	9.29721e-16
NC_018142.1\|WP_014845763.1\|703330_704647_-\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.02788e-58
NC_018142.1\|WP_041696172.1\|684946_686251_+\|hypothetical-protein	gnl\|CDD\|213993	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound. The PHP domain of this HisPPase family has an unknown function. It has a second domain inserted in the middle that binds adenosine 5-monophosphate (AMP). The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to give histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to the other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	2.20032e-05
NC_018142.1\|WP_041697136.1\|696011_697055_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176197	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	3.54121e-132
NC_018142.1\|WP_014845750.1\|681969_684429_+\|alpha-ketoacid-dehydrogenase-subunit-alpha/beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	2.27213e-102
NC_018142.1\|WP_041696176.1\|689683_693505_-\|NACHT-domain-containing-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	2.3667e-11
NC_018142.1\|WP_014845749.1\|680574_681942_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	3.45017e-175
NC_018142.1\|WP_014845748.1\|679207_680563_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	2.36757e-126
NC_018142.1\|WP_014845747.1\|678444_679197_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.9239e-81
NC_018142.1\|WP_014845745.1\|675434_676178_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	0.000422275
NC_018142.1\|WP_014845765.1\|705352_706186_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.11241e-25
NC_018142.1\|WP_110644284.1\|676181_677963_-\|glycosyltransferase	gnl\|CDD\|133043	cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.	7.92507e-90

>NC_018142.1|WP_041696176.1|689683_693505_-|NACHT-domain-containing-protein
MAMAKRSDLVDALAAVAVSALSGPLGAIGVSAAGELVKLFQKVRGRTSEERELQKQIREAITAWAKGEHLGQDVVDRGLAWAIEYVQAAGCQHELIAEADFDPTRAAEAVLTPAKARDEYWGTDPEYGVAERAVHITYSALCPKLKAEGGVVLAAIQASRNEIRGSIDQLREDLLGVADRHELIDYLEKQIREWDYSPWTQGREWTQDRRPSQLERTLEIADEQRTMSPAEALEGVWLLTVLGGPGSGKTWLARRLAREAAETALEQLRDPRVDPASVELPLFTTVAEWIKRHGTGFEGLVEAALPHESQQKIRRLVLRPGSWVLAVADSLDEGVAVNQARRLLNSLTSSRTRLVMTSRPEAWHSAASGLCATQDTRVGTLTELRYPKDVHGYIKAWFTESPPTAQHLIRQLERRRELRATATSPLLLTFYCMLTEQEPDQELPRRRRELYRTIIDLLLAGGWATTEEPVDTAKCRAILQQWAWDAVKDAVTPAGLGVWPETITTNCTTLNMSTATERALDNVTPKQEHPRSGLYDHKQVERRFLHRTLWEYLVSEHLATFSATKAAKALLPHIWFDPDWHVTLPMAIAAHRRRSKLVDRLWAHHTDHPTPAQKVVNDHLEELMLEVAAQTDPKDWDKAGQARIRSLRESFAPQHPELIASSAHWGSPSHVEAILAELLSSTLWRIPDLVFELSALEINVKERAEARRNILATLAGLNWISTALIGPSPGWIPTLVHILLSLEPSDEERAEARRNILTTLTNTYPQEVPDLAFALSALEPNIKERTEARHSILTTLTKAYPQEIPDLVLALLSLKPNDIERAEARQTILTTLTNTDTPTAKLYTAAPNLARALLSLEPNDIERAEARQTILTTLTNTDTPTAKLYTAAPNLARALLSLEPNDKERAEARQTILTTLTNTNSDRVIPLVQVLSTLKPDDAEQAKTRRAILDALPNTTPQTIPDLVCTFSGLKPNDEERTKARQTILTALTSTAPGRAPNLVRALSELKPNDEERTKARQTILTTLTSAEPWEIPNLVPALSALEPTDEERTKARQIILTIFPRTDSTGVHFLMRELRALGVTDDERRETRRTIITALTNTGPHTILDLISELLVLEPTDEEQTEARQIILTKLTNADSIAVCFLVRELRALRVTDDERTESRRSILTALTNTDPRTVPDLIGELSALEPTDKERMEARRTILTTLTNTNPWAVPYLVAPLSKLEISDEERTEARKAILTALINADSSTLHELVGLLRQFTPVHDWLAALGLESV
>NC_018142.1|WP_014845753.1|687303_688905_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MSDIPATQHAIQIVGVDEFVLNPDKPVDEVGPHQMLLKVEACGICFSDTKLLHAFDSHPRKAEVISGIAPEALTEIPGYRPGGQATVPGHEPVGRIIAAGEQVTHFKVGDRVLVQADWKHLRTPKSNGAFGYNFEGALQEYVVIDERCVVSPSGEEFLIHVTDGPSAAAVGLIEPWATVEGSYAWAERNHVADGGRLLVVGDGDFGSLTSQHQPAETVLAAPQEVAGLGGETFDDIVCFCSDAEVIEACAKLLGTRGVLCVVLGGGRIDRKVSLDIGRVHYDFIRFCGTTGDDPADGYAWIPATGELRTGDKVAIIGAAGPMGQMHTMRAVTSGVPGVTVTGTDVSDDRLEHLRGVVGPVAEAREVPLEIVNTSTAPLEPGYTHLSCMVPVPALVSQAVDLAGEGAIVNAFAGIPAGTFGDFDLQGIIERRVFMLGTSGSDVSDMRTVLRKIEDGVIDTTISLDAITGMAGFADAIGSVINRTSGGKIMVFPSLHDLGLIRLAELETRLPHVAAKLKNGRWTKEAEEALLAGE
>NC_018142.1|WP_014845752.1|686273_687278_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSNAPKVRGTFLTALNRPVLVCPSDAEATVVLDEATIPADVSLPAVVRLGEETYEVTATPRGEREISGRVALVTGGAQGFGAEIAKGLVDQGCFVFIADLNGDGAAAKCAELGAELTHPITVNVADEESVAAMAADVERVAGGLDLVISNAGIVRAGSVLEQDASAFRLSTDINYVAFFLVTKHLGGLLARQHEAAPGWLTDIIQINSKSGLVGSNKNAAYAGSKFGGIGLVQSFALELVEHGIKVNAVCPGNFYDGPLWSDPDRGLFVQYLNSGKVPGATTIEDVRAFYEAKVPMRRGTTGIDVLRAIYYIVEQAYETGQAVPVTGGQVMLNA
>NC_018142.1|WP_041696172.1|684946_686251_+|hypothetical-protein
MNQINDPGVPPEERLAALRVVAGQESFPDWVVESNNHIHTCYSFSPYTPSGAALGARRAGLRVVGSVDHDSIAAAAEMTEATRILGMGSVTGFECRAFFDPGGPFATRKLNNPDSAGIAYMTVQAIPAPARAEVDAWLAPRRAARLERTLAMAEAANSILTGLGLASFDPQTDMVSRSQYATGGGITERHLLAAMADALIDGFGRGEALVKGLQGMGIDVPAKLAGVLGDADNPHLTYDLLGVLKSEYLASIYIQPTADECPTAEEAVTLADSVGAIATYAYLGDVSASPTGDKKAEKFEDDYLDELFDAMAERGLRAVTYMPPRNTPQQLRRIHDLATRHGMYEISGVDINQPRQSFTCPELRDPGFAALNEATWALVAHEALTAVDPSLHILGEGRPRPEWLAARIAAFAPLGRALADGADAAELAATAPRL
>NC_018142.1|WP_014845750.1|681969_684429_+|alpha-ketoacid-dehydrogenase-subunit-alpha/beta
MTRSLIVDPTNVRAKGVITAPEIPVNAYEPNFKAELKRHGKQGLIDILHDMIAVRSFETMLNSIKTTGAWNGVEYNHRGPAHLSIGQESAVVGQASQLGADDFVFGSHRSHGEILAKCFSASRKLDDADLEHIMKEFLDGETLFFAEQVSDDGLADVAENFILYGAVAETFARKAGFNRGLGGSMHAFFTPFGSMPNNAIVGGSADIATGAALFKRINRRAGIVIANIGDASMGCGPVWESMMLAAMDQYRTLWKDGVEGNPPIWFNFFNNFYGMGGQTSGETMGYDILARVGMGVNPEAMHAERVDGLNPLAVADAVARKRELLDAGRGPVLTDTITYRFSGHSPSDASSYRTREEVELWEKHDGLKNYAAYLIKNKVLTQADVDAIQQRFDERLTKVIALATRDEDLSPRVHMDFIDTVMYSNGTKEKLSEEEPQLLTPLAENPRVKALRNKIRTARDENGKPVSKNKAFAYRDAIFEAVAHRFATDPTLAAWGEENRDWGGAFAVYRGLTELLPYHRLFNSPISEAAIVGAGVGYALSGGRALVELMYCDFLGRAGDEIFNQAAKWQAMSAGLLEMPLVIRVSVGNKYGAQHSQDWSALCAHMPGLKVYYPATPYDAKGMMNLALCGTDPVVFFESQLLYDKAEEFQPGGVPEGYYEVPEGEPVVRREGSDLTIATLGATLYRALEAADILQSKYGLSAEVIDLRFVAPLNLDPVVESVKKTGRLLLSSDAVERGSFLQDVASKVQSIAFDHLDAPVTVVGSRNAITPAAELEKEFFPQPEWLVDAVHERILPLPGHVTISNQTTAELARRTREGL
>NC_018142.1|WP_014845749.1|680574_681942_+|dihydrolipoyl-dehydrogenase
MTDHDVIVLGGGPGGYIAAERLGHAGKNVLLVEASSLGGTCLNVGCIPTKTLLGAAKTYDHARHGAQFGVKVDGAHVDWPALQKWKDKVVSTLVGGVAATEKKAGVTVVHGHGTFDGPGKVTVDGTTHTATHVILATGSVPVMPPIPGAKDNPLVIDSTGALSLPEIPERLAVIGGGVIGVEFASLYSMLGTQVTVIEMLPEIVPFADDDVAAQLRKALKDVTFKLGCRVTSIDGGKVNWTTADGAEESVEADYVLMAVGRRPAVDGWGAENTGLEYSGRGVVVDDRMRTNLPNVWAIGDVTGRSLLAHAAYRMGEVAAANILDPEAHRRGEVMRWHTVPWAVYTAPECAGIGLTEAAARKAGRDVITASVPGYMSGRFVAENGLQAPGLAKLILDAETRQVLGIHVLGSYAAEMIWGASAVLETELDLTDLRQLVFPHPTVSELIREAAWAAKA
>NC_018142.1|WP_014845748.1|679207_680563_+|2-oxo-acid-dehydrogenase-subunit-E2
MATVIVMPALGNSVESCLIVSWLVKEGDTIAENGILCEVETDKASMEVPSTASGTVLKLLWAEGDDVPVKQPLLVVGEPGEDPAPVLAEVGFGAAQEETPEQATVATAEPPEQAPTGASVAGDERGSSPRARNLAAAEGIDIATVPAGTGPGGRVIARDVAAVAETTTRAAARAGAVAGEGTGLGGRVSQADLTAPAAPAEETPTPAPAAVGGADPDFPGPSTSTPLKGIRKVISERMMHSLASSAQLTYTATARAQGLLDMRKKLKNSDPALGLNKVTIGDLVGFAAVRTAAKHPTHNAHLEDGVLTTFERVHLGFACDTPRGLLVPTVRNASQLSLGQFSAICKDLAAQAIEGTISPDLLGGATFTVSNLGGFGIEHFTPLLNVPQTAILGVDAIFPRAYADEKGKVRVEQRIGLSLTADHRVIDGADAARFLQDLVAFLENIELAALS
>NC_018142.1|WP_014845747.1|678444_679197_+|DeoR/GlpR-transcriptional-regulator
MVVERTERESAILAKLADDGRLSVSGLASDFGVSEVTIRGHLRTLEQQGMLVRTRGGARPITLQGILQRQQVNVEAKEKIAQAAAELIGDDDTVMIEAGTTAALIARHLTGRRGVQIVTNSTLVFNNARTNPALNIILAGGVFRPESESLVGPLAERAIADFNTRIAFLGTDGFSPERGLTTRFVEGAQVATTMRERAEQTWLVADSSKFGQAGFVSFLPLDAITGIITDSGLPDDAVEALKEHTHVRIV
>NC_018142.1|WP_110644284.1|676181_677963_-|glycosyltransferase
MVNADTELALVDNLAPEERRASTSGRYSPTLLLVAILASIGVLAYACFILNPAFRGDLIPWLIVITCELILIFQAAMALWTILSGYGRQPSYSFQAAQAKMFDPQLNARLRISNDPTKWPMYLNGRQANVDVLITVYGESLDVIRTTVKAAMAMRGLHTTWILDDGDSDEVRDLAKTLGCRYVRRLGSSGAKAGNVNNALSVAKAEFFVIFDADFVAKPDFLYETLPFMEDPNVAFVQTPQVYGNLNNIVSRGAGFIQMVFYRFIQPGRNEFNAAFCVGTNVLFRRAAVKDIGGIYTQSKSEDIWTSILLHERGWRSIFQPKELAIGETPDTIESYSKQQLRWATGGFEILLTHNPLRPRRRLHMDQRLMYFATCTFYFTGIAPGLLMLVPVLEVFFDLRPVTLAVKWYEWALFYPGFYAMQILLAAVIAGTFRWEVLLLAANSFPIYIKAFFNALLKVDTKWSVTGATGGKASAFNFIMVQVWAFVLMVGTSIVSIYRDYSMGHLNIATFWCVLNSFFLGAFVVTAFLENRQKKREKTQPQRGLEAAESPYADRQLVSVGRQSEALDVEAILDAQAAKGALAENPELQDRKG
>NC_018142.1|WP_014845745.1|675434_676178_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSWLNRLKLLSGIVIIVLIVGLLTLLFNQRQNQVASIAAHVDAPRTVVASPYGGLVTDQKRNPGDHVSAGDQLFTVISSNLRDMAALGMKPTSTDGYKVDLELGTITFYATIDGYLESFTAFEGSYVNGSERLAEIVSNKNKTVVATFQLNPSDYGRIEQDGKVAIHLPDGQLVEGRVMSVNIGTDETSKKTVTEVTVASDGLQADDLTLLTRRNTPVNAVMSLRDDGPLAGPTQTLREFLVKIGLR
>NC_018142.1|WP_014845756.1|694152_695853_-|dihydroxyacetone-kinase-family-protein
MTRLTNDPADFPAEALKGFIAANKRYVKPVYGGVARSTFTPAGKVAVVYGGGSGHYPAFAGWVGHGFADGAVCGNIFSSPSAAQAYSVLKAVHRGAGVLMGFGNYAGDVLHFGQAIERLRAEGIEADTLVVTDDIASGDAAEPEKRRGIAGDFPVFKITSAAAEAGLGFDEVKRVFARANAATRSFGVAFAGCTLPGAKGPLFTVPAGRMGIGLGIHGEPGVAEADLGSADDVARTLVEGLLADRPAGAGNRVVAIVNGLGSSKYEELFVVTSCVVARLEAAGLECADVEAGEFVTSLDMAGVSLTLVWVDNELLGYWDAPCDAPAYRKGSVGSVERDDDALSQAAAPVEVTTPGSTASREAAEVAAGLLDDVAEMLAQAQEELGALDSVAGDGDHGIGMANGSRAAAGAARAAVSAGGGLRTTLTAAGDAWSNRAGGTSGALWGALLTALGSALGDEKTPGSDDLAVALQAALSAVQRLGGAEVGDKTLVDALSPFVAAFVATDGDLAAKSAAAVVAAEAGTESTRALVARLGRARPLGEKSVGTPDPGAVSLTKVVTLLNSRLS
>NC_018142.1|WP_041697136.1|696011_697055_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRAAVLEEIGSLRLKQVPVPEPGPGEVLVRIEANTICGTDLRIISGAKTAGVRPGVILGHEFAGRVAAVGRGVDGVPVGAQVTCSIVVSCQRCRACLSGREQLCENLVLFGYELDGGLAEYLLVPRIAMDHGNLVVLEKEIPATTLALAEPVSCCLNGAGQVAVAPGESVVVLGTGPIGLLHIALAKLAGATTILAAGREGRLAAATDFGATCAVALTGEALTAEVRERTNGRGADVVIVAVGDLTLANQALELAAIGGRVNYFAGFPKGKTASIDPNLIHYRELAVTGGSNARRADVRRAVELLSSGALDVGRLVTHRFPLAELEAAVTAVARRDGLKVAVMPAAG
>NC_018142.1|WP_014845758.1|697163_698519_-|PQQ-binding-like-beta-propeller-repeat-protein
MKAVTHSPNAAASPASRWRLRGAAALMGAVLMTTSCWGTGSETPSSAPTIPSSPESSPPPTPPARLTTAWEVTVTGSGPLIGAHEGLVVAPDLATGGSKLRMLNWADGSEVWSVDISGDLTGFERPEKVSDMVSGQVALWAKTSQQRRSLFVYSTADGSLIGRLDEKPEHYLAMAASGAIYEMDTSNEGSVRISRAPSVKEAHTKQWSIDLPEEAREWFWVREHDGVTDFCVDGQAGPVHEYACYLSVHTDDGSPVVKDGVWHRSAWVGNVLVGHKENGPLKGFDQHGKELWTSELQDGYPLGWGDDLVYVTEGTHRSFVGLDPATGKELWRRDWDEGSFPGLVFDRTPSPQDGPLSVFVPSPSIRTGVLDPKTGQVDLVDHQITKAHDVIPTFGGALLIPTGDYYAPTWIALDPGKPGTLWDDVLKNYDTYATLGDRLMASKGDRIALLA
>NC_018142.1|WP_041696178.1|698809_699946_-|VanZ-family-protein
MQDWVNNGLLAAIIGAVAFAALFLPGLVWQYRRFGRLSFARLLGLAAVCLYAAALLTYTLLPLPERSVEWCQLHARGMNLRPFAFIDDIREAAPGRSLRGLLTSFAVLQVAFNVVLFVPFGVILRRYFNRSVLVTTLLGAATSLLIELTQLTGLWFIYPCAFRAADVDDLMTNTLGTILGAVLAPVLLWWMPRAHQLVQDRLTPRPVTMWRRWIGMLIDAILVALVAGTTAVVLRVATLLFLGDVSEEWTLLIAPAAIALATITVFVWPAWNHLAASVGQTVVWLTPKWRNADGTLHDGSRLRRVVRSLVVPASWLIPMFLAPFGTSSPFIWLLPLVVPLSLVMVPFTRTHRSLSGWLTGAQMVDIRAEETDKALPVH
>NC_018142.1|WP_014845760.1|700133_701516_+|amino-acid-permease
MSSPAGDLKVAMKPRHLVMMSLGSAIGAGLFVGSGAGIATAGPAVLLSYVISGAIVLAVMRMLGEMVADDPNPGAFSYYADKALGPAAGFAIGWLWWIEMGLVVATEATAAARYLSTLIPGFPQWGFALIIMVVFTGINLVKVGSFGEFEFWFSLIKITFVVVFLVLGAAFLLGFTPAASPGWGNLLGNDFMPHGIKGVASALLVVIFAFGGVEIVAVAAAETADPERSIRKAVNTILWRILIFYMGAVTIMLLALPWNDPSLKDAPFVAVLNAAGLPAVAAMIGTVVVVALLSSLNANLYGGSRMIFSLAERRMGPAVMRGTNARGVPVAAVLATSFLGFVAAALNYFWAEEVLKFLLNMVGSTMIVIWLGIIASHLALHRRAAREGNHSLKGFPVALSWATLVAVAAVVALGFTVPEIAVQLSSTFALTALLAAVGGWLAKRAAVPGPESEPAAENGM
>NC_018142.1|WP_051015113.1|701726_702950_+|ornithine--oxo-acid-transaminase
MSENTRTAIELVDTYAAHNYSPLPVVVTEASGAWLTDVDGRRYLDCLAAYSALNFGHGNPTFIDVAKRQLDRLTLTSRAAHSDWLGPFAQKLARLAGKDMVLPMNTGAEAVETAIKVARKWGHQVKGLPQDRGEIIAMHGNFHGRTTTIISFSDDETARADFGPYSPGFRLADFGDVESLRQAITPETVAVLLEPIQGEAGIIVPPAGYLREVRELTRRNNVLLICDEVQTGMGRTGTTFRFQAEDIDPDIITVGKALGAGIVPLSAVIADREILGLLRPGEHGSTFGGNPLACAIGSAVCDVLATGEYQRRSTGLGERLHAGLEALVGHGVTAARGAGLWAGVDIDPAIGTAKDVSLDLLDHGILVKDTHGQTLRFAPPLVITEDEIDLIVREFRAVLEQRLTRHA
>NC_018142.1|WP_014845762.1|702970_703348_+|6-O-methylguanine-DNA-methyltransferase
MPDAAAELTIERVLCAVECIPIGRVVSYGDLAELVGTSARRVGAIMASAGPGVPWWRVVNASGRLPGHLVAEASRRWADEGTPAVDGRCVMSQARADLPRLAADHEARLAEWASPARDLTSSAVQ
>NC_018142.1|WP_014845763.1|703330_704647_-|glycoside-hydrolase-family-3-protein
MQLLKSSYRDPLPEASGSAGAFPGGATNRLRTSKPTGGDFGSLRRFAAAAACASVLTGCAAGPAAPPTEPATAAGTPSTSTPETPPSPAPTPAAVRCRAKADSLTTEQQAGQLFMIGVSTSGLDSATRKAIASGSVGSVVLLGDNNAGAGQISGITSELGTMRSAGMPLLVAVDQEGGRVQRLKGPGFSDIPNAVEQGSLADGQLRNRAQAWGGELAAAGIHYDLAPVADVVPRNKQSSNAPIGKLNRNFGNNVTAVSRSVVEFTQGMQDAGIVTSLKHFPGLGEVTVNTDHGVARDGDTTADGESLEPFRKGIEAGADSVMISSAIFTRIDPDQEGVFSRKIVTDMLRGDLGFQGVAISDDLGEAAAVGNVKPGDRAVRFFAAGGDLLINADPSLMDEMLKATITWAAENPGNADRLAESAGRVLALKESAGLLNCG
>NC_018142.1|WP_014845764.1|704731_705199_-|hypothetical-protein
MLYDYDEDEQSRNGAKNPKGYSPMPKQNDTASAPAARPRLIQRLRGSGPSELHPLIFLEALLVGVFVCISTADVYHLGRDAAITVGIIVGILLIVMLFIPFLGPLIGIAFSLLWGFLGYALGSSFARGIGPVNSMIIGGVAALIGFSVSLKAHLS
>NC_018142.1|WP_014845765.1|705352_706186_+|alpha/beta-hydrolase
MRHFTVDLNRERSATLEAVLFDAPSPEEQPTPLEHPRPAVIIAPGGGYMMLSQRESDPVAVAFLRRGFNVFVLRYSLREHAAYPNPAIDAAQAVRWIRAHAGEVGVDPRQVNLLGFSAGGHVAALLGTHWNRDDLVAAERAEYEATGRGDLLRHGSRPDALVICYGALSVDWVDGDEEILRTAARVDCISAVTGETPPAFVWTTGQDEVVPPSQSLRFVTALAEAGVPFEYHHFQWGCHGLSTADELCDADRESLPVNVASWVDLAANWLRKIGEEK

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Crispr_ID: NC_018142_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_7

2437087-2437190

Orphan

Consensus_repeat	Method
AACATCCTGACAGCAGCATTCCCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_7

>merge|NC_018142|7|2437087-2437190|CRISPRCasFinder
AACATCCTGACAGCAGCATTCCCCAAACCAGCCGCGTCAACACAAGCAGCTGCCACAAGCAAAATCGATCAGGTCAAGAACATCCTGACAGCAGCGTTCCCCAA

>NC_018142|7|7|2437087-2437190|CRISPRCasFinder
AACATCCTGACAGCAGCATTCCCCAA	ACCAGCCGCGTCAACACAAGCAGCTGCCACAAGCAAAATCGATCAGGTCAAG
AACATCCTGACAGCAGCGTTCCCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014847226.1\|2432894_2433299_-\|30S-ribosomal-protein-S8	unknown	unknown	gnl\|CDD\|234658
NC_018142.1\|WP_014847223.1\|2431309_2431915_-\|30S-ribosomal-protein-S5	unknown	unknown	gnl\|CDD\|234790
NC_018142.1\|WP_123824169.1\|2446547_2447867_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273346
NC_018142.1\|WP_014847229.1\|2434206_2434578_-\|50S-ribosomal-protein-L24	unknown	unknown	gnl\|CDD\|234566
NC_018142.1\|WP_014847228.1\|2433586_2434207_-\|50S-ribosomal-protein-L5	unknown	unknown	gnl\|CDD\|178791
NC_018142.1\|WP_123824172.1\|2443069_2444902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NC_018142.1\|WP_014847234.1\|2438483_2440112_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_018142.1\|WP_073970143.1\|2435346_2436051_+\|DUF1851-domain-containing-protein	unknown	unknown	gnl\|CDD\|370173
NC_018142.1\|WP_014847240.1\|2447879_2449685_+\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|367119
NC_018142.1\|WP_014847236.1\|2442170_2443073_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847224.1\|2431940_2432324_-\|50S-ribosomal-protein-L18	unknown	unknown	gnl\|CDD\|235524
NC_018142.1\|WP_041696610.1\|2449694_2450075_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847238.1\|2444898_2446353_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847230.1\|2434579_2434948_-\|50S-ribosomal-protein-L14	unknown	unknown	gnl\|CDD\|180117
NC_018142.1\|WP_123824175.1\|2440226_2440502_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_041696603.1\|2441878_2442148_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847222.1\|2431127_2431310_-\|50S-ribosomal-protein-L30	unknown	unknown	gnl\|CDD\|180163
NC_018142.1\|WP_014847227.1\|2433391_2433577_-\|type-Z-30S-ribosomal-protein-S14	unknown	unknown	gnl\|CDD\|181216
NC_018142.1\|WP_014847225.1\|2432323_2432866_-\|50S-ribosomal-protein-L6	unknown	unknown	gnl\|CDD\|235495
NC_018142.1\|WP_123824173.1\|2440955_2441882_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223531

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014847226.1\|2432894_2433299_-\|30S-ribosomal-protein-S8	gnl\|CDD\|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	9.01363e-79
NC_018142.1\|WP_014847223.1\|2431309_2431915_-\|30S-ribosomal-protein-S5	gnl\|CDD\|234790	PRK00550, rpsE, 30S ribosomal protein S5; Validated.	1.6143e-94
NC_018142.1\|WP_014847229.1\|2434206_2434578_-\|50S-ribosomal-protein-L24	gnl\|CDD\|234566	PRK00004, rplX, 50S ribosomal protein L24; Reviewed.	6.25491e-34
NC_018142.1\|WP_014847228.1\|2433586_2434207_-\|50S-ribosomal-protein-L5	gnl\|CDD\|178791	PRK00010, rplE, 50S ribosomal protein L5; Validated.	1.00625e-128
NC_018142.1\|WP_123824172.1\|2443069_2444902_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.51094e-08
NC_018142.1\|WP_014847234.1\|2438483_2440112_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	8.61332e-39
NC_018142.1\|WP_073970143.1\|2435346_2436051_+\|DUF1851-domain-containing-protein	gnl\|CDD\|370173	pfam08887, GAD-like, GAD-like domain. This domain is functionally uncharacterized, but it appears to be distantly related to the GAD domain pfam02938.	4.39419e-31
NC_018142.1\|WP_014847240.1\|2447879_2449685_+\|TraM-recognition-domain-containing-protein	gnl\|CDD\|367119	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.	4.29334e-43
NC_018142.1\|WP_014847224.1\|2431940_2432324_-\|50S-ribosomal-protein-L18	gnl\|CDD\|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	1.89085e-55
NC_018142.1\|WP_014847230.1\|2434579_2434948_-\|50S-ribosomal-protein-L14	gnl\|CDD\|180117	PRK05483, rplN, 50S ribosomal protein L14; Validated.	1.82754e-83
NC_018142.1\|WP_123824169.1\|2446547_2447867_+\|hypothetical-protein	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	6.63674e-09
NC_018142.1\|WP_014847222.1\|2431127_2431310_-\|50S-ribosomal-protein-L30	gnl\|CDD\|180163	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.	3.58378e-25
NC_018142.1\|WP_014847227.1\|2433391_2433577_-\|type-Z-30S-ribosomal-protein-S14	gnl\|CDD\|181216	PRK08061, rpsN, type Z 30S ribosomal protein S14.	1.82276e-33
NC_018142.1\|WP_014847225.1\|2432323_2432866_-\|50S-ribosomal-protein-L6	gnl\|CDD\|235495	PRK05498, rplF, 50S ribosomal protein L6; Validated.	1.72522e-106
NC_018142.1\|WP_123824173.1\|2440955_2441882_+\|hypothetical-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	1.57904e-09

>NC_018142.1|WP_073970143.1|2435346_2436051_+|DUF1851-domain-containing-protein
MGAYFKHRGGPLGVGEAASREVLERFEGVFPASILQIWRTVGFDGIANGRHWITNPLEWAPAVESWLEGLELPFPEQQWWCIARTPLGSMQLWGETSGPALNIVSVFGFLYPDSDSHRSMLDPVMRERSGCVSLLTPLKDAARDDVSRRRLVDEGFKKFGSLGPDEVFALVPAYCLTGRLDASLLAKEPAVAHVAFLGQNTEPEIRPDLMASFGDALVEQIVTQDNQPPNSSGQ
>NC_018142.1|WP_014847230.1|2434579_2434948_-|50S-ribosomal-protein-L14
MIQQESRLKVADNTGAKELLCIRVLGGSKRRYAYLGDIIVATVKDAIPGGNVKKGEIVKAVVVRTAKERRRGDGSYIKFDDNAAVILKSDGEPRGTRIFGPVARELREKKFTRIASLATEVI
>NC_018142.1|WP_014847229.1|2434206_2434578_-|50S-ribosomal-protein-L24
MNSLHVKKGDRVKVIAGKDKGKTGEIIAVDPRAQKVTVEGVNVVKRHKRESQGANGRRIEGGIISFEAPIHVSNVQLVTKIDGKEVVTRVGYQRVDVTKRRSDGSEYQAQRSVRIAQKTGKEI
>NC_018142.1|WP_014847228.1|2433586_2434207_-|50S-ribosomal-protein-L5
MSNDIEIPRLKKKYREQIVPALREEFKYANVMQIPGLTKIVVNMGVGEAARDSKIIDGAVRDLTVITGQKPTITRARKSIAQFKLREGMPIGCHVTLRGNRMWEFADRLLTLALPRIRDFRGLNGRQFDGKGNYTFGLNEQVMFLEIDQDKIDRVRGMDITFVTSATNDQEGRALLKHLGFPFKAVDDPKPVKGGRGPAFQPRKKK
>NC_018142.1|WP_014847227.1|2433391_2433577_-|type-Z-30S-ribosomal-protein-S14
MAKTALKVKQSRKPKFGVRAYTRCKRCGRPKSVYRKFGLCRVCLRDLAHAGQLPGVTKSSW
>NC_018142.1|WP_014847226.1|2432894_2433299_-|30S-ribosomal-protein-S8
MTMTDPIADMLTRLRNANQAYQESTSMPSSKIKVGIAEILKAEGYISNFELTEVEGQVGKVLKVTLKYGDSRERSIAGLRRISKPGLRVYAKANALPKVLGGLGIAIISTSQGLLTDKQANAKSVGGEVLAYVW
>NC_018142.1|WP_014847225.1|2432323_2432866_-|50S-ribosomal-protein-L6
MSRIGRLPIAVPSNVEVKIDGQDVAVKGPKGELKFTVREPITIAKNEQGELQVSRPDDERLSRSLHGLTRTLVSNMVTGVTQGYEKKLEIVGVGYRVVAKGPTQLEFALGFSHPVVVNAPEGITFTVETQTKFTVHGIDKQLVGETAANIRKIRKPEPYKGKGVRYAGEHVRRKAGKAGK
>NC_018142.1|WP_014847224.1|2431940_2432324_-|50S-ribosomal-protein-L18
MAISLGIRKGLAAKTASRARRQLRGRKKINGTAERPRMVVTRSARHLYVQVIDDTAGRTLVSASTMEADLRAAEGDKSAKARKVGEIIAQRAKEAGIENIVFDRAGNKYHGRIAALADAAREAGLGF
>NC_018142.1|WP_014847223.1|2431309_2431915_-|30S-ribosomal-protein-S5
MSETQQRGDRRGGERRGRDDRRGQASREEKNQYLERVVAINRVAKVVQGGRRFSFTALVVVGDGEGTVGVGYGKAKEVPAAIAKGVEEAKKHFFRVPLIQRTIPHPVQGEKAAGVVLLRPASPGTGVIAGGSARAVLECAGVHDVLAKSLGSANAINVVHATVDALQQLEEPEAVAKRRGLPVEDVAPAALLRARKEEVAG
>NC_018142.1|WP_014847222.1|2431127_2431310_-|50S-ribosomal-protein-L30
MAELRITQIKSGVGGKDYQRATLRTLGLKRIGQTVVREDRPEVLGMIRTVAHLVEVEEVK
>NC_018142.1|WP_014847234.1|2438483_2440112_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MRLVKIFGMCLLLMFVMPLMTAVLGSVSPSERRNQEKNCSPSDGAASSAWSVPMGAAYRVTAQFGPRVSPITGAPDMHTGIDLASPAGDAPVLAATAGEVVRIENLGNRSYGLWVEINHGGGTTTRYAHLSSVSVRVGDRVNTGQQIAVEGKSGGVTGPHLHFEIRHDGEAVDPAKELMERFGFSFDGVPGITFNGSRAITADDVAAFLPNPQGVDQSGSLTEEQIANATAIVETGQKLGLPPKAWAIALMTALQESTLGADKSTTTPNSDVDVGIFQQRAKVGWYADGLSVEQNTAILNDVRYAAATFYQGHDMSLIAYGLNPEGAAGPPGYHLPGLIDIKDWMNRKDLGEIAQAVQKSDFPRHYTKHEATVAALLPRINTGIGSYECAPAAEGIPSNGTAGEQVAAYAMTQIGVPYSWGGGDETGPTKGFCCSPGGKDGSAIVGFDCSGLVLWAWSKLGVKLPHESSAQQRMTTPVAKENIQAGDLLFFPGHVGIADGKGGMIEAPRPGLAVRVTPDVLNDPHYGPLFTGAGRPSLPNKP
>NC_018142.1|WP_123824175.1|2440226_2440502_-|hypothetical-protein
MAILELDPTDVSTWPYWMTLKQVEMALQVSRPVLVAMLSGEDPILPSTIINRHKSGKRVHRRVKRDDVLNLSPSVVESPDEFDIDSDSDEE
>NC_018142.1|WP_123824173.1|2440955_2441882_+|hypothetical-protein
MVLSKSFSASASALSSSLRALGDMAPPAGWRRWLRLGPSKKALEAAARKAKLLATFDETLTIAVASPKGSAGKTPTARGIAAAFGAARGGGVVAVDLNELRGTLGQRSVITHDRHIGHLVEAADYLLGHRARTVEIERCMNRQPDSFEWVLTSDPTTTEPMSDEDFTKIHTVLKRFYPILVIDTGNAELASSWRSAAAVADLIVVPMKWRADHIAPASRMLEGMLARGEQVGGRVVIVGTNGVKEADPLARAKALEHFHGLPIVEIPVDPALNGQIIRWNSLSDSTKVAFETLGATLSDLAQAQGVTR
>NC_018142.1|WP_041696603.1|2441878_2442148_+|hypothetical-protein
MKDLFKDLSPSFGPFAKVFDSWVSTTLALVWACGFVFAAYHLIIAVGAIASARRHHRADGEATVGRLVWPGLSLIALALVPTIYAALVS
>NC_018142.1|WP_014847236.1|2442170_2443073_+|hypothetical-protein
MVRVVTDNRPDPAAMKRRRPFVFLLAAVMALLLVFAFWLGTRTGQNPSAGGSAPATASESSTPTPPRYMTVDGEVVPGLWRGTATVGSGNSKAIYGIPYGWPRTIDGAVGAAMNIEAAFYSLPAMVENTAAQLFPKLYTGAALEEVLKGKSYVWFRKKGREMAGMNDDGVVLDLNGKPSKEKRFYGGGIPQYGAYIVRSCEKDSTGQPSRVEVAVLIPMYGGTGTDDDMSNVHLQFKQINNSLVWVDGDWRSETSGSVENVWKKKVSNQGWEHLKSLVGEGWAVPADATQEPFEGAVLTQ
>NC_018142.1|WP_123824172.1|2443069_2444902_+|hypothetical-protein
MRKLLVTAFGILLAAFILGNISAHADQGQGEKKSCIPWWAEISGEICPPDRDDPPMMPVDPTPTAAPTATEPPPSASVEPPTPPPSEAPSPPPPSASSNPSPTTAAEEWAEEAAKSAGELASRVGIGAGSRDGDWGSGIGETFGVTFSIGLVIFAVVMIMMLARASRGHYSPEARSEFADALPKIAIYVPLMLSTPTAVHWVSTLGKDLSESFTNEIGNSFGDMMRAMGGSMLRGGVFGFIGGAVLALIILFVLLIAMLVWFIEDCVAEYALYILTILIPISTALSLWPSNKRLRWRLIGAIAGCALVPAVSRFAYWIMSKFMVTNVFSGTLDMATMVKAIVVIAMSTSMPIILGYIMPALSPYGAPGSDGAAGPWQSHVKESPQNVQEGGRKTQQGVDRLMQRFRDGKNTTTGTGGSTSSGSMAGGSSGAATGASGSLAGGNATGASGGAATGAGSGAAAGGTAATGAAVGLGAAAGVVAGVVIAAKVGADAAKGAARESALRMNAAVGIGYATDPDTSGPSSPRRHQETPQQQNAGSSGSVEGEPEPSSHDDGAGEEPSHKYGPKFSNYEEDIPRRQEPSASPPFSRTSPKPAGPPPGNRPPDSWRTP
>NC_018142.1|WP_014847238.1|2444898_2446353_+|hypothetical-protein
MSIGNTFRLGGVTPVPWLSKGKIAILLFLIGIGVILLIVVIRTSNLFVVLGLAITVGAFVLVWRRKASDGSTWVLGVGEQIRYWIGKRARWDDFDPVREAQPFLLMDPLRLLAVPASDGSELAVLDYPEAMVCVLEISGHRTGVQPADDLAREQRKMNAVHKTLADPKVAIDQVDWLTLVRPENPEEIAMGVQVADDLPETIKAAAEELSWMIASHTETMYSYLVIRFNKDLLYERVAKPPFSEFSGAEAAYDAVSIVARKLETNGIFVKGALGPAEVSALIRAIVVPHRSPYDLEGCEEGIFASCPSWIRQDTMLFSSCDDRSWWHASASFGLFDWPLSPVRGRWLEPLVFGVGLGPRTVVSQVKIIRRHKAREFAKDQLTTAASERLKNDESGKVDAGEAWSQETVATEVAQDIVLNGQVGIIPAVRIMISANSPRGVKNAMADVASIADDSMNAEGITMDDTRPGVGLLHCLPLGMEVPSR
>NC_018142.1|WP_123824169.1|2446547_2447867_+|hypothetical-protein
MRLLVKTFGWHYPAVKGTFASSKQTPALMTVLTNTDLDYHGDPLGVNLWTNQAILESAWTLYSDGWINSPNQCILGALGTAKSTYVKTILLRSMMHGGRAVVFDRKRQAQNGRTQGEYVKLADTIGGTTIRFHQARDQGTRINILDPAIVQMTTAGSDSLLGQDRLLIMVAEAALETKLTSEQRHALKVAHQSALDAADLKRRVPVLADVIHALQNPCTTGVKGVDLDRLREWGLPVVLGLMRYIDGDLAGLIDGETTGPGGEPVDFASRLLVFDTSALEYGSTALGLMMTVTTAFLLSVWVNMPGEKSLVIEEAYSADGIGVVPAMLRDLAKRTRGVGASMISVFHHVSDVPVDSPLRSLITESELVSIFRQDKGADVDAAVELLSLDPSTRQLIQELPRGVHLRKRGPKLPLVVAELTRTNLDRYITFTDDAYVVNN
>NC_018142.1|WP_014847240.1|2447879_2449685_+|TraM-recognition-domain-containing-protein
MFPFGLSLTTLLLIMGGILLGVVALGVLLGVLLPSFGVPRAAAKNLDEQRTKSANWARYKDVKKDLASPSEPDPRRLPLCRLNGKSLSNRPYRSIQVIAPSGAGKTPRVVVPAVLGHFGPAVITSIKGDVLELTRAARAAQGKIWVFDPSCSLGPTARWSPLGHIRTWADALDAARWIQESSKANSGTGGIQDHAFWDAQARFLLAPLMYMTALAGNTMGDVADLVVGGQETEDFITKQLQNFPESGPRTYWARFMGLENKTKSSVLITAATVLECWTHPKIAEAVNVPVGDRNILNLDDFLAGNNTLYLVAPATAQAQFTPIYESLINAITMRVEQEYSRRGSIALNPPLLLALDEAANIAPLRRLDYLASAGAGQGIMVLSIWQDEGQQIEIYGQAKARTISANHYAKIYLSGIQDHQTLSNLSEQIGRAVMQQTSTSRYRDGTSTTTSYQELAVAPPSWIRQLALGKAIIILGHYPPILGEVTAWYEDKNMRNLIPDEVAERFDRAFGTFPKKKLKKSLTSNASPGTQVSFPSVQSSSMGNDSSPGVMPTYGNFGPRKKGVNAGLSDPANSPKLPTQQQRDESAQGWFVNDYRKNLNG
>NC_018142.1|WP_041696610.1|2449694_2450075_+|hypothetical-protein
MEAEEFEELLLKIANSISELNDRITALEAHPWRTWPAPGEEFTAWVDQWLIPTFQMGSLLEGWQKQPAVTSELAALFGGYQEMTGPKATGWDALAWHQHRLNVEQNIKEFLGRTRNHLNTSAWGNS

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Crispr_ID: NC_018142_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_8

2878869-2878960

Orphan

Consensus_repeat	Method
CTTCAACCGGAATGGTTTCGACACACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_8

>merge|NC_018142|8|2878869-2878960|CRISPRCasFinder
CTTCAACCGGAATGGTTTCGACACACCCCGCTCGTCGACGCTCGTGAGGCTCGGCTCAACCAGCTTCAACCGGAATGATTTCGACACACCCC

>NC_018142|8|8|2878869-2878960|CRISPRCasFinder
CTTCAACCGGAATGGTTTCGACACACCCC	GCTCGTCGACGCTCGTGAGGCTCGGCTCAACCAG
CTTCAACCGGAATGATTTCGACACACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014847610.1\|2877413_2878499_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_018142.1\|WP_014847617.1\|2887563_2888013_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847615.1\|2884360_2885128_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847613.1\|2881927_2882692_+\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350158
NC_018142.1\|WP_123824084.1\|2882819_2883365_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_051015059.1\|2867975_2869775_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_018142.1\|WP_041696714.1\|2874653_2875811_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NC_018142.1\|WP_014847612.1\|2880430_2881618_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NC_018142.1\|WP_123824291.1\|2886131_2887382_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NC_018142.1\|WP_014847604.1\|2870570_2870930_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|227028
NC_018142.1\|WP_041696711.1\|2870929_2871229_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_018142.1\|WP_041697849.1\|2879009_2880275_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NC_018142.1\|WP_157682481.1\|2885454_2885631_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_123824078.1\|2887948_2888440_+\|DUF2185-domain-containing-protein	unknown	unknown	gnl\|CDD\|370760
NC_018142.1\|WP_014847606.1\|2871613_2872369_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NC_018142.1\|WP_014847609.1\|2875869_2877405_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NC_018142.1\|WP_123824081.1\|2883451_2884051_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847603.1\|2866677_2867979_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847607.1\|2873524_2874598_-\|restriction-endonuclease,-SacI-family	unknown	unknown	gnl\|CDD\|370564
NC_018142.1\|WP_041696713.1\|2872941_2873223_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014847610.1\|2877413_2878499_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_018142.1\|WP_014847613.1\|2881927_2882692_+\|nucleoside-phosphorylase	gnl\|CDD\|350158	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family. This subfamily is composed of uncharacterized members including Streptococcus pneumoniae hypothetical protein spr0068. The nucleoside phosphorylase-I (NP-I) family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases such as purine nucleoside phosphorylase (PNP, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases such as AMP nucleosidase (AMN, EC 3.2.2.4) and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). Members of the NP-I family display different physiologically relevant quaternary structures: hexameric (trimer-of-dimers arrangement of Shewanella oneidensis MR-1 UP); homotrimeric (human PNP and Escherichia coli PNPII or XapA); hexameric (with some evidence for co-existence of a trimeric form) such as E. coli PNPI (DeoD); or homodimeric such as human and Trypanosoma brucei UP. The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	9.00289e-78
NC_018142.1\|WP_051015059.1\|2867975_2869775_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	1.95525e-12
NC_018142.1\|WP_041696714.1\|2874653_2875811_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	6.4429e-64
NC_018142.1\|WP_014847612.1\|2880430_2881618_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	3.41189e-103
NC_018142.1\|WP_014847604.1\|2870570_2870930_+\|diaminopimelate-decarboxylase	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	1.67521e-42
NC_018142.1\|WP_041696711.1\|2870929_2871229_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.8197e-11
NC_018142.1\|WP_041697849.1\|2879009_2880275_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NC_018142.1\|WP_014847606.1\|2871613_2872369_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.01249e-21
NC_018142.1\|WP_014847609.1\|2875869_2877405_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	7.93157e-36
NC_018142.1\|WP_123824291.1\|2886131_2887382_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NC_018142.1\|WP_123824078.1\|2887948_2888440_+\|DUF2185-domain-containing-protein	gnl\|CDD\|370760	pfam09951, DUF2185, Protein of unknown function (DUF2185). This domain, found in various hypothetical bacterial proteins, has no known function.	1.3256e-21
NC_018142.1\|WP_014847607.1\|2873524_2874598_-\|restriction-endonuclease,-SacI-family	gnl\|CDD\|370564	pfam09566, RE_SacI, SacI restriction endonuclease. This family includes the SacI (recognizes and cleaves GAGCT^C) restriction endonuclease.	6.76684e-100
NC_018142.1\|WP_041696713.1\|2872941_2873223_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.4143e-05

>NC_018142.1|WP_014847610.1|2877413_2878499_-|redox-regulated-ATPase-YchF
MALTIGIVGLPNAGKSTLFNALTRNDVLAANYPFATIEPNVGVVGVPDSRLPVLAKMFDSQRIVPATVSFVDIAGIVRGASKGEGMGNAFLANIREADAICQVTRVFEDVDVTHVDGKVDPAGDIDTITTELILADLQSLEKALPRVEKEARIKKESRPKLEAMQAAVEVLESGKRIHGSGLDMELLRDLFLLTAKPFLYVFNCDQDELADEDLKDRMRQVVAPAEAIFLDAKFEAELVEMDEEEGRAFLEEMGITEPGLDVLARVGYETLGLQSYLTAGPKEARAWTIPQGATAPEAAGVIHTDFQKGFIKAQVVSFDDLVAAGSEAAAKAAGKMRLEGKDYVMQDGDVVEFRTGLTSKR
>NC_018142.1|WP_014847609.1|2875869_2877405_-|recombinase-family-protein
MPQNSRTPRKAAIYLRISQDHEIDSLTIERQRSDCRDMAERRGWEIVGEYVDQSISATDKTKHRPGYEAMLSDYQAGMFSAIVCWEIDRLARQPRQLEDLIDLAESRGLVVASVSGDANLDSPNGKLITRIKVTVARQEAEQKGLRQSAAQRQRARQGCAPKGMRPIGYSTSGDIIPDEAEIVRAIYRLFTRAERPESLRSLARGLSGIQVIDGITHRPKHSHVVSLERAARREAEGKEPQSIEPNGPWSPSTVLGVLRNPRYAGLSTYTPKGYQADGGRRRSWKAQIVRNEAGEPVRGQWEPIIDDETWWKAQSILDDAQRVTNASGSTRRKHLGSGLFRCGVCGGKVTGGPRGYRCPGHVMRTGTHIDEFVTDLVAARLEKPDATRRRRLLDTGDPSILGIEAAISEQRARIARVQHDYDEGVVEGRDLQRIRNAAETRINELEVQRLTTGRAGTLTPILGAADPASAFLEASLEIRRDVIDLLMTVTLQPQPRGKKGFNPDSVVIEWR
>NC_018142.1|WP_041696714.1|2874653_2875811_-|DNA-(cytosine-5-)-methyltransferase
MTESLPVISLFSGAGGLDLSVTRAATDPLDTNGPAKSPYRIGVSTDYDPDTVKTYEANFPGVPSLVGDIRTITTQEILEAGSLIVGEAALVVGGPPCTPFSKSGFWLAEKRESRDPNASLLDEYARVVREAQPEAFILENVQGLTYRTHKAQLERLLTEMKSLGYNPQYQVLLAADYGVPQLRRRVFIVGRRDGKRFEFPTRKFAGDSEHTKRRDDEALPMHRTASEAFEGLLEVPEPGEAVSGSWQELAAEIPPGENYLWHTERKGGRNEFKWRTRYWTFLLRLSPDKPSSTIQAQPGPWVGPFHWENVIDPFNGQPAARRLRVPEIKRLQTFPDNFQVIGDRATAQRQIGNAVPVELGKVVVRALAEQLGHISSIATSTDTRW
>NC_018142.1|WP_014847607.1|2873524_2874598_-|restriction-endonuclease,-SacI-family
MPLHISRTVAAERLNRAYATASAGIHDHHWTQRIDEVWAFASKTYVPALGTILLAKTVDDRVDVGTIKVLPDDVNPRTFSLRTLCHSVLVPGSKRLQFSIRSTGREPLNNQPWFRFSHVDEINRVRDPRDLERYRQILQEIDRLDRVGAQLALTSYVFVGIREMGKRQLIAQVAGSLSVDAILDGVAELMQYGGPFVVQALGAVFVSQFAPQIATRRLNDPSRDFPGDVQALDDQGRPFLSLEARNKRVSMSDALAFAGACAAHGISRGIILELTGTATDLDTRRVIAECWQQFGVSVSVIDSMTAYVTAAAVFGLNDPGEFLGDFAGALSFYLDEIEAPEATRGKWAEIVSQRVFE
>NC_018142.1|WP_041696713.1|2872941_2873223_+|helix-turn-helix-domain-containing-protein
MLRTPTPRFLTLRKATDRGYAGYSTVRKYIADGSLPACKFGRRVRLLESDLEALLTSTRTSSVDAANQKLVATAPPLTPEQTRRLRDLLGEAS
>NC_018142.1|WP_014847606.1|2871613_2872369_-|transposase
MNTTTSLDRDQILNLCELIHTSRSGNLPVAGSRVLGLFRCIQVTLLTLRHNLTQELLADIHTVSQSTISRVITVYTPLIAEALQAWVPGTGDLDPDRQYIIDGTLAPCWSWHDRPELYSGKHHTTGVNLQVACTLAGHLAWISPPLPGSVHDAKAIKESGFLTTLNAHNHIGDKGYIGLGMITPVKKPAHGELTDTDKRNNTTINRVRYLIERVIANLTTWRVLHTDYRRPYNTFETTIQAVTGLIFAYTP
>NC_018142.1|WP_041696711.1|2870929_2871229_+|helix-turn-helix-transcriptional-regulator
MTIDDILAERSVDRSQVEAHKARMLAEVRAYRLRELRENAGLTQAQLAERIGVGQRQISKIEHGDLDTAKIGTIRRYLEAIGGSLSLEYVAGDLKVVIN
>NC_018142.1|WP_014847604.1|2870570_2870930_+|diaminopimelate-decarboxylase
MWEVDVTLIADWLRSLDQTSYEQVIAALEVLRDRGLSLGRPLVDTITASRHRNMKELRPGSIGRSEVRILFAFDPKRMAILLIAGDKAGSWTRWYKRNVPLADDLFDKHIRALRKRPEK
>NC_018142.1|WP_051015059.1|2867975_2869775_+|tetratricopeptide-repeat-protein
MTEGPAFGAELGRLARAVGHGPDFQILIVEAVSDEARRMAREAIDHAAKERGLRVAEVCWDPTADADGLERLIVAAAADTDLIHLSGASDWLTYERWQGLNIRRDRLAESARARLVWWLHPQNVAEMATQAPDLWAWRGGVYSFLNVASPNVSPLTSFDFPHEARVNRTDPEPRRNRIREIRSWLEGTPQPELVYEVAREWGDLALSLGEFDEARHAYQDIALPAARLHHTAQEVLTIKQALATVATEAGDFGGAIEILKDAAEESGRLLGADHPDTLSSRNNLAGAYRAAGRLNDAIPLFEETLTTREELLGPNHPHTLTSRNNLAAAYQDAGRLNDAIPLHEETLKALTQLLGPNHPNTLGSRNNLAIAYRAAGRLNDAIPLLEETLAAQEQLLGADHPDTLSSRNNLAGAYYAAGRLNEAIPLSEETLAALTQLLGPNHPHTLASRNNLANAYREAGRLNDAIPLSEETLEARTRILGPNHPDTLSSRNNLANAYQAAGRLNDAIPLHEETLEARTRILGPNHPHTLTSRNNLAAAYYAAGRLNDAIPLFEETLTAQTQLLGPDHPDTLRSRNNLAVACAAAGKPFRSEEQPGTSA
>NC_018142.1|WP_014847603.1|2866677_2867979_+|hypothetical-protein
MTFQPAQSLMEALQSLEFDEALNHGDPRFVDTQQARGSEQTRRRLARKLGWDPETDAFFPATTKHVLFFGHIGSGKTTELRQYLDRFTASGHYLPVEVNVLTLLDSNNLVYSEVLMAMAERLLQELKAKGIKVPDASLKPIQEWFASSTRVMEMFAEAGVGAEASVELGGGLPGLLRLISRVTSSFKTGASTKDAMRIEIRNRFTQLAGAFNALIRSAEKSLDGRRIVFLIDGTDKLRGKDTEDFFIYDAEQLLTIATLAIYTAPLQLKYDGRIGGKLDADLVLPMIKLYERTTTRCEAGWAAMREILLRRADETLFESDEVIRLLVEHSGGHPRELLHLLRLCCELAPGEVIDHATAQAAIGRLAADYRRWLTPEDYALLCEIDRTPEHGGNDERAQRLLHRLALMEYNDGSWRRSHPVIRTLEGYVRAAAQ
>NC_018142.1|WP_041697849.1|2879009_2880275_-|M18-family-aminopeptidase
MVFSTPSSHLDDLAAFVTASPTSYHAASSMASRLADAGFVPVDEKGRFPRGAGRFFVVRHGAVIAWRQPERIDDATGLRVVGAHTDSPALKVKPEASFSFRGWGQIAVEIYGGALLNSWLDRELGIAGRIITRDGAQHLVRLDSVARLPQLAIHLDRSVNDGLRLDRQTHTQPVFTLDAEPDLLAALAEQAGVRPGDVLGHDLFTYLSQPPARFGLRNEFFASSRLDNLSSTHAGLTAIEDLGDGDDLVLLAAFDHEEIGSATSSGAAGPFLEDVLERIASVAGCDLDATKALLARGSCISADAGHLVHPNYSQHHDPHVDLVPNGGPMLKVNANQRYATDAVGEALWLQACEAAGVPSQVFVSNNAMPCGSTIGPITATRLGMVTVDVGIGLLSMHSAREMCGVDDPHHLAAALRAYLEG
>NC_018142.1|WP_014847612.1|2880430_2881618_+|DNA-recombination-protein-RmuC
MDTSSLLLALAALLVGVALGFLLARQSAATRTARAEAERDAAVKRAADVTADREQLAHQFRSLSADALEKQTKQADRAAELRLTPISEALRQLQQRLAEVENQRTALAAELRQQVEGVRVSGEAVRKEAASLATALRAPHVRGAWGESSLRRIAEVAGLVEHCHFETQTSYTSSEGNRLRPDMRIDLDGGRAVFVDSKVPLSAVLEACQAEDEEERAAHLRRFVRHVRTHIDQLSAKEYWALDAGSPEFVVLFLGSDEFYRLALEQQPTLHEYAAARRITLAGPGLLIPLLQIISHGWRQSRLAESATRISALGRELYSRLATLGTHFEKLGASINGTVKNYNAAMGTLESRVLVSARRFRALDVSMDELPRLSSVDEGVRTPVAPELMGPSATE
>NC_018142.1|WP_014847613.1|2881927_2882692_+|nucleoside-phosphorylase
MLMPGAFPILDFDDDPDDLISPMMFADVQAEGPGVAVLAFLSEKTIETAEGWEVRRVGTVPFVTVEYPIYEATRSGQAVRVVPMPIGAAAAALVTERMIRSGADSLVAVGSCGALRKLPEGEFVVPSRALRDEGTSYHYLKAGAWVETDEALRATVAKVARSAGFGAQVAPVWTTDGFFRETRALVEQRKSQGCVAVEMECAAMAAIAKVRGVRFAQLLFTADTLADNDYDLRGFGVDSHHVALSLALEAAAGC
>NC_018142.1|WP_123824084.1|2882819_2883365_+|hypothetical-protein
MSAGGLVDGGACWGLPVGVKVPELVADIRAGSRRPNTSRASQEYLQALDRRRSAIVNGIAIPPLSSIWYSDSSGSFRTTRPTIEPNEVITIATGGSARITAVSPVIPAQVFVREFTGYDAEGISSDERPTIECVTEGRTCALDSDGESVTAAVELDSATVFVTVEVYYHIDSLDAEYHMTS
>NC_018142.1|WP_123824081.1|2883451_2884051_+|hypothetical-protein
MRVLLPVRGTRDQWHAWADIVPGAVIDGATTWEQISDGAPALVQPPYGSLSEQTSEALVAALTRDGERECDFIHWAGYAEDDILPREDVVVPAWALPLVRRLSVDPKKSIRQGVPLDIVVIREPLSWLARELPLHTQQCPMLILPHDRSFVTACPIYHDSVYIGCTRELGDSLLAADLDSYPISLDSVIRGTIDWQPQT
>NC_018142.1|WP_014847615.1|2884360_2885128_+|hypothetical-protein
MFEPLLATLDTIRLRSGTLAPGPIVRETSADGSEVRIVYSACPESTLPDIIRREISSAHERGAQFEWKLYGHDRPTRLHMTLLEAGLIPGDRETVLALDLRQLPEAVRAGMEVTLPAVRASVAQLADYAQISRESGRSGVDTERSQLAAAMTDDPDRLQVHIVYVDGSPVSAGRLLLDRSSAAAELAGGRTAPAHRRRGHFTTTVLSRIAAAIEAGAETLWVDALPTSAPVLTKLGFIPVTWTQPYVADSAADLE
>NC_018142.1|WP_157682481.1|2885454_2885631_+|hypothetical-protein
MTVLHVLVAASSALASVQRAALVIGGGLAITLTCLIAVLTPSLRTVNVKLDETEADIS
>NC_018142.1|WP_123824291.1|2886131_2887382_+|threonine-ammonia-lyase-IlvA
MAALIPDARDRLKGVARITPVELNQRLTEDTGSEVWLKREDLQPVRSYKLRGAYNLISQLPPEARDAGVVCASAGNHGQGVAFAAATLGIGAVVYVPTTTPRQKRDRIQALGRGHVELVMEGATYDQASRAAARFAESNDRILVPAFNDPRTAAGQGTAIAEAVEQLGFVPDVVILPVGGGGLMSGAAAWLRTHHPQVRIIGVEPDGAPCVAAAISAGRPFPLNNIDTFVDGAAVSLVGDYTFDVINEAKIELTRIPEGQVCSEMLDMYQTDGIIAEPAGALASAALPTGGVGSRVHVPAGSRVLSIVSGGNNDVARYADVVERSLLHEGRKHYFLVNFPQQPGALRRFLDEVLGPDDDITYFEYVKRSSREVGPALVGVELSNPGDYRFLLARITECGMEVNEVDSTSPYFRFLV
>NC_018142.1|WP_014847617.1|2887563_2888013_+|hypothetical-protein
MIASLKTIGKPAEEILSLLQETLAQWLPTQDATSSDLETSGLGYAGWLDPVLTAQDGTRTRIRYPFAIGSATMNLRRAMAEPERGAWTWAHLWMSADELRLHPRDAQHTPDWLAQGAERARTAPPPYPDENEGVHQAITEQERDARRNS
>NC_018142.1|WP_123824078.1|2887948_2888440_+|DUF2185-domain-containing-protein
MRTKACTRPSPSKNATPAATADTGQPHIIRTGKHPATQLSPPDWRSTSVSTQKFTKFIKDSGGCLVSRNIIDGRGHIKWVRRERSANPVDTGWRILSDIDTDDFLNEPGNLIVASFNSIANLEPALIGIYNLPVGADLQLVVQDGRRRWHDNATGQDITDQLL

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Crispr_ID: NC_018142_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_9

2959073-2966217

TypeI-A

Consensus_repeat	Method
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CRISPRCasFinder
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CRT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	PILER-CR

97 spacers

csa3,cas2,cas1,csb2gr5,cas7,cas8u1,cas3

The CRISPR arrays of NC_018142_9

>merge|NC_018142|9|2959073-2966217|CRISPRCasFinder,CRT,PILER-CR
GCCTCAATGGAGTCCGACCCAGAAGGCCGGAACAATGAGGAAAAATGTTTCTTGGAAAGAAACAAAACGGCGTCCCGTCTCAATGAAGTCCGGCCTAGAAGACCGGAACAATTTGATCCCAATCTGCTGCCGCGTTTGAGACACGAATTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGCCTTGTTGCGTACCCAGAACCATTTTGAGCGAGATTTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCACGACGGTCACGTCACGGTGGCCGTGCGGCGCTCCGTCTCAATGGAGTCCGGCCTAGAAGGCCGGAACAATCTCACTGATGCCCAGGTTGAGATGCTCTGGTTGTTGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGAACTCGATCGTCGGGCACGACGTGATGTCGCTCAATGAGTCTCAATGAAGTCCGACCTAGAAGGCCGGAACAATTTCCGGCAGCATTGAGGTCAAATATCTGCACGAGATGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATATGATGCGATTCAGCCGGGGCCGGTACGCCTCCGAGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCTTTGCGCTGGTTCAACGATGCTATCGCGGGGGCGTGGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATACGCCAATGGAGGGGTTAGACGCTGGACCTTGAACTGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATTGTCAGTTTTACCCCCCCTAAAACTCCTGGTAAAAAGTCTCGATGAAGTCCGGCCTAGAAGGCCGGAACAATCTGTGGAAAAATCTGAGAGAGAATCGCGCCTACCGCCTGAGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGAGACTTCCGCACCGACGACGCTTGATGAGACCCTCCCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGATCAAGATCGTGCCGAAGATCGAAGGCAAGATCCCCGTCTCAATGAAGTCCGGCCTGGAAGGCCGGAACAATCGGCCAGTACCTGACGGTACGGCTCCCCGACAACGTGAGTCTCAATGAAGTCCGGCCTGGAAGGCCGGAACAATATACGCGGCCTCCTGGCTGATCGACTCGGGGATGCGAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGGGAGGTTTCGACTCGGGGGATCGTGCCGGGCTGCTCGGGTCTCAATGAAGTCTGGCCTGGAAGACCGGAACAATGCCAGCTGTTGCGGGTGCCCACCACAGTGCACCACAAGCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGCGGCGACTTCTCGAGAACGCAACAGTTTCTGGCGAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTCGGGGCTGCTGCGGATCTAGTCATGCTAGACAAAGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACCCAGCAGTACGCAGATCTTTGACTCGCGTTATCAAGTCTCAATGAAGTCCGGCCTAGAAGACCGGAACAATGCCTCCATCCGGTAGAGACCGTCCCGACGGGTCGCTGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTCGGCGAGGGAATCGCGAAATGGCCCATCCAAGCCATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCGGTATGGCTTTGGGCTACAAACCCCGGGGATCCCATTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGAGACATGAAACCTCCCATGAGTTATGCCGGCGGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTTATCTGAGGCGTTACAAAAATGAGTTGCGCACGATAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGCCGCTGTCGGAAAGGTGAATCGTGGCAAACAACGATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCAAGATCGAGGACATCTACGTCGGCCTCATCGAGGCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGCCTCAAAATCGCCCTGAAGCTTTTCAGCAACATTGTCTCAACGAAGTCCGGCCTGGAAGACCGGAACAATCCGGTCCAGGCCGAGCCCGAGGGCACGGGCGACAGCGATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGCCGAAGTGAGCATCCCGCCCGAGCTGCTTGGGTTCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTACCTTCCACCACGATGTTTTTCGCTCCGAGGAACGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTGGGCGAACCGTCGGAGTGGCCCGGCCCGATTTGGGTGTCTCAATGAACTCCGGCCTGGAAGACCGGAACAATAATACAAGGAACAGCAGAAAGAGATTCGTAAGGCTCTTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACCCCCGACGTTGCCAACCTGCTCGGCATCCACCGCACCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATATGGAGGCCCCCTGCTCGAAAGAGGGGCGGATGTGCAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGCCCTCGATGTACTGCTGGTCCGTCGCGGAATAGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGCCTGTTACTCTGTCCTGCTACCCGGACAAGCAGGGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATATCTGATCAGGAGATATTAAATGCAGAAAGCAACCAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGTTGAATTTGTCATGGGAAGTGAAGGACCACCACACGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCCTGTTGATTGGGGCCAAGGCCATAGCTTTGATGCTTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATATCTTGCTGTTGCCTGCCGCGTCAATGCCGGGCGGGTCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCACGCCGAACTCATCCCAGGGCCGCGACCAGCCGACCGGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGCTGGTGCCGCGACCTCGAGGCAACCGCCCTCGATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAAGCGTTGGTTCTACGGCTCATCAAAACAGCCGCGGGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACGTTGTCCGGGTAGCCCTGTACACACCTGCACCCGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTATCGCGCCCATGCCCCTGTAGCGCCCCAGCCCGCAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGATTGGTGAGGAATTCTGTTGGATTCCCGTACATGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGAGAGGGCCTGCCATATCTGGCCGGGTAGGTTCCGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCGGCCACAACCCGCAACTCCGTGCCGTACCCGGCTTGCGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGTCGGTTCCTCGGCCGGCCTACCGCAGGCCCCGAGAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGCCACCGAGCTTGGCGTAAGGAAAGTGTTCATGAAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCAATGGATAGGGAGAAACCCTGTGTGGTCTCATATTCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGACCCGGAATTGGTCACCGAGGCCTACAAGAAGATCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACTAGAAGGACAGGTAACAATGGCAGACAACTATGCTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTCTTGCTGATATGCCACAGCCTAACTCGAGAAACAGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGGGCGGACCGATCAGGCATACGCTGCCGGTGTGACCGCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTATGACAATGTGATCGGCACTCTGGACATGCAGATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGTGACAGTATGAAGTCCCCGTCAAAGGCCAGGTTGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAAGAATACACTGATCCCAGCTTGTGGGCGTTTTCCGCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGTACTGGGATGAGCACCCCTATGGGGACGGATCCGTCCCTCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTTGGGGCGGGCTCACTTCATTGGCCCTAGAAGGCCGTCTTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCCAGCTGAAGCGGAAGGACGGTGCCGGCGCCACCAGCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCCGCCGAGTGTGTCGCGGGCCCCGGCGGGGGCTTCACGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACTGGTACTGGTGGGTATGTGAAAGGGCGAGACTACATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGATCACTTCGTCACCGTCATGGATGCTCTGAAGAATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGATCGGCTCCGACTCCCTGGCAGCGTTCAAACGCTTCACGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCCCAGACTTCCTGACAAACGAAGGAACAGTCACACTACTGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTAGGTCGGGTCCGGGTGCCCCAGGCCCGCGACCAGGCTGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGAGGGGGTGACCAGGGATTGTTTCAGGGAGTACGTGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTTCCAACAGGCCATGATGGGCATTGACGCGTCCCAGCAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGTAGGGGCGGTGACGTCGGGCACCTGGATCTTCGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAGCGCGAGACTTACCCGACCTGGATCTACAAGAAGCAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGGCTGAATGATGGCTACAACCACTTCCTGCTGGAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTCGGTGCCCGTTGGCGGGAACTCGAAACCGCAGCTGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAGTTAAAGAAAAGTCAAACAAGAAGCGCGAGTTCCTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAGAAAAAGACATTGCCCCGCTGATCGAAAGTCTTGTTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGTGCCGGCCATTGTGGCAATGGTCAACGCCATGAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTCAACATCCCGAACGCTCAGGCCATTCTTGTGGATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATATAACTATGGTGGTGTCTCGCTCTCCTGATGTCTTCAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTCCGGGGTGGCACATACGGCAGAAGTGGCGCTGGTTTGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACACCCAACCGTCACGCAACAGGCGCGACAGTATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTCGCGAATGCGGTGCTGTTCACGAGCGACAATGTTACGGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATATGAATCTGAAGTGTTTTGCAGACGTGCGCGAAAAGATGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGCATTTTCTCCCGGGTTTCCGTGAGAATCTCCAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCGAGTCATCAATGGTATAGAGAATCATATCCTCCAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGTGATAAACAGATGCATCTTGTCACGCTTTGAATGCTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGTCCATCAGGCCATTCAGTGCCTGGATGTGGGGTATGTCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGGATAGTTACCATGACTTGGACATGCAGAGACTGCAAGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGGCAGCGGGCACCTCCGCAGCGGCCTCAAAGATGTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGTCGTTGATGCGGATGCCGGCAAGGTGAAGTGGCCGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATACGACAGAGGGGGCGACTCCCGAACCAGAGAATCAGGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCTGCCGGGTCTGCACCCGTATCGGGTGCGGAAGCTGCTGTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT

>NC_018142|9|9|2959073-2966217|CRISPRCasFinder
GCCTCAATGGAGTCCGACCCAGAAGGCCGGAACAAT	GAGGAAAAATGTTTCTTGGAAAGAAACAAAACGGCGTCCC
GTCTCAATGAAGTCCGGCCTAGAAGACCGGAACAAT	TTGATCCCAATCTGCTGCCGCGTTTGAGACACGAATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCCTTGTTGCGTACCCAGAACCATTTTGAGCGAGATTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCACGACGGTCACGTCACGGTGGCCGTGCGGCGCTCC
GTCTCAATGGAGTCCGGCCTAGAAGGCCGGAACAAT	CTCACTGATGCCCAGGTTGAGATGCTCTGGTTGTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GAACTCGATCGTCGGGCACGACGTGATGTCGCTCAATGA
GTCTCAATGAAGTCCGACCTAGAAGGCCGGAACAAT	TTCCGGCAGCATTGAGGTCAAATATCTGCACGAGAT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	ATGATGCGATTCAGCCGGGGCCGGTACGCCTCCGAG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTTTGCGCTGGTTCAACGATGCTATCGCGGGGGCGTGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	ACGCCAATGGAGGGGTTAGACGCTGGACCTTGAACTG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TGTCAGTTTTACCCCCCCTAAAACTCCTGGTAAAAA
GTCTCGATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGTGGAAAAATCTGAGAGAGAATCGCGCCTACCGCCTGAG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GAGACTTCCGCACCGACGACGCTTGATGAGACCCTCCC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GATCAAGATCGTGCCGAAGATCGAAGGCAAGATCCCC
GTCTCAATGAAGTCCGGCCTGGAAGGCCGGAACAAT	CGGCCAGTACCTGACGGTACGGCTCCCCGACAACGTGA
GTCTCAATGAAGTCCGGCCTGGAAGGCCGGAACAAT	ATACGCGGCCTCCTGGCTGATCGACTCGGGGATGCGA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGGGAGGTTTCGACTCGGGGGATCGTGCCGGGCTGCTCGG
GTCTCAATGAAGTCTGGCCTGGAAGACCGGAACAAT	GCCAGCTGTTGCGGGTGCCCACCACAGTGCACCACAAGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCGGCGACTTCTCGAGAACGCAACAGTTTCTGGCGA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGGGGCTGCTGCGGATCTAGTCATGCTAGACAAAG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACCCAGCAGTACGCAGATCTTTGACTCGCGTTATCAA
GTCTCAATGAAGTCCGGCCTAGAAGACCGGAACAAT	GCCTCCATCCGGTAGAGACCGTCCCGACGGGTCGCTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGGCGAGGGAATCGCGAAATGGCCCATCCAAGCCAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CGGTATGGCTTTGGGCTACAAACCCCGGGGATCCCATT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGAGACATGAAACCTCCCATGAGTTATGCCGGCGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TTATCTGAGGCGTTACAAAAATGAGTTGCGCACGATA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGCCGCTGTCGGAAAGGTGAATCGTGGCAAACAACGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CAAGATCGAGGACATCTACGTCGGCCTCATCGAGGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCCTCAAAATCGCCCTGAAGCTTTTCAGCAACATT
GTCTCAACGAAGTCCGGCCTGGAAGACCGGAACAAT	CCGGTCCAGGCCGAGCCCGAGGGCACGGGCGACAGCGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCCGAAGTGAGCATCCCGCCCGAGCTGCTTGGGTTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TACCTTCCACCACGATGTTTTTCGCTCCGAGGAAC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TGGGCGAACCGTCGGAGTGGCCCGGCCCGATTTGGGT
GTCTCAATGAACTCCGGCCTGGAAGACCGGAACAAT	AATACAAGGAACAGCAGAAAGAGATTCGTAAGGCTCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACCCCCGACGTTGCCAACCTGCTCGGCATCCACCGCACC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATGGAGGCCCCCTGCTCGAAAGAGGGGCGGATGTGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCCCTCGATGTACTGCTGGTCCGTCGCGGAATAGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGCCTGTTACTCTGTCCTGCTACCCGGACAAGCAGGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATCTGATCAGGAGATATTAAATGCAGAAAGCAACCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTTGAATTTGTCATGGGAAGTGAAGGACCACCACAC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCTGTTGATTGGGGCCAAGGCCATAGCTTTGATGCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATCTTGCTGTTGCCTGCCGCGTCAATGCCGGGCGGGTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CACGCCGAACTCATCCCAGGGCCGCGACCAGCCGACCGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCTGGTGCCGCGACCTCGAGGCAACCGCCCTCGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AAGCGTTGGTTCTACGGCTCATCAAAACAGCCGCGGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACGTTGTCCGGGTAGCCCTGTACACACCTGCACCCG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TATCGCGCCCATGCCCCTGTAGCGCCCCAGCCCGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGATTGGTGAGGAATTCTGTTGGATTCCCGTACATGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGAGAGGGCCTGCCATATCTGGCCGGGTAGGTTCCG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CGGCCACAACCCGCAACTCCGTGCCGTACCCGGCTTGCGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGTCGGTTCCTCGGCCGGCCTACCGCAGGCCCCGAGAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGCCACCGAGCTTGGCGTAAGGAAAGTGTTCATGAAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CAATGGATAGGGAGAAACCCTGTGTGGTCTCATATTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGACCCGGAATTGGTCACCGAGGCCTACAAGAAGATC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACTAGAAGGACAGGTAACAATGGCAGACAACTATGCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTCTTGCTGATATGCCACAGCCTAACTCGAGAAACAG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGGGCGGACCGATCAGGCATACGCTGCCGGTGTGACCGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTATGACAATGTGATCGGCACTCTGGACATGCAGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTGACAGTATGAAGTCCCCGTCAAAGGCCAGGTTGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AAGAATACACTGATCCCAGCTTGTGGGCGTTTTCCGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGTACTGGGATGAGCACCCCTATGGGGACGGATCCGTCCCTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TTGGGGCGGGCTCACTTCATTGGCCCTAGAAGGCCGTCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCAGCTGAAGCGGAAGGACGGTGCCGGCGCCACCAGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCGCCGAGTGTGTCGCGGGCCCCGGCGGGGGCTTCACG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACTGGTACTGGTGGGTATGTGAAAGGGCGAGACTACAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGATCACTTCGTCACCGTCATGGATGCTCTGAAGAAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GATCGGCTCCGACTCCCTGGCAGCGTTCAAACGCTTCAC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCCAGACTTCCTGACAAACGAAGGAACAGTCACACTACTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TAGGTCGGGTCCGGGTGCCCCAGGCCCGCGACCAGGCTGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GAGGGGGTGACCAGGGATTGTTTCAGGGAGTACGTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TTCCAACAGGCCATGATGGGCATTGACGCGTCCCAGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGTAGGGGCGGTGACGTCGGGCACCTGGATCTTCGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AGCGCGAGACTTACCCGACCTGGATCTACAAGAAGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGGCTGAATGATGGCTACAACCACTTCCTGCTGGA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGGTGCCCGTTGGCGGGAACTCGAAACCGCAGCTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AGTTAAAGAAAAGTCAAACAAGAAGCGCGAGTTCCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AGAAAAAGACATTGCCCCGCTGATCGAAAGTCTTGTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGTGCCGGCCATTGTGGCAATGGTCAACGCCATGAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTCAACATCCCGAACGCTCAGGCCATTCTTGTGGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATAACTATGGTGGTGTCTCGCTCTCCTGATGTCTTCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCCGGGGTGGCACATACGGCAGAAGTGGCGCTGGTTTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACACCCAACCGTCACGCAACAGGCGCGACAGTAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGCGAATGCGGTGCTGTTCACGAGCGACAATGTTACGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATGAATCTGAAGTGTTTTGCAGACGTGCGCGAAAAGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGCATTTTCTCCCGGGTTTCCGTGAGAATCTCCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CGAGTCATCAATGGTATAGAGAATCATATCCTCCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTGATAAACAGATGCATCTTGTCACGCTTTGAATGCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTCCATCAGGCCATTCAGTGCCTGGATGTGGGGTATGTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGATAGTTACCATGACTTGGACATGCAGAGACTGCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGGCAGCGGGCACCTCCGCAGCGGCCTCAAAGATGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGTCGTTGATGCGGATGCCGGCAAGGTGAAGTGGCC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACGACAGAGGGGGCGACTCCCGAACCAGAGAATCAG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGCCGGGTCTGCACCCGTATCGGGTGCGGAAGCTGCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT

>NC_018142|9|2|2959073-2966217|CRT
GCCTCAATGGAGTCCGACCCAGAAGGCCGGAACAAT	GAGGAAAAATGTTTCTTGGAAAGAAACAAAACGGCGTCCC
GTCTCAATGAAGTCCGGCCTAGAAGACCGGAACAAT	TTGATCCCAATCTGCTGCCGCGTTTGAGACACGAATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCCTTGTTGCGTACCCAGAACCATTTTGAGCGAGATTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCACGACGGTCACGTCACGGTGGCCGTGCGGCGCTCC
GTCTCAATGGAGTCCGGCCTAGAAGGCCGGAACAAT	CTCACTGATGCCCAGGTTGAGATGCTCTGGTTGTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GAACTCGATCGTCGGGCACGACGTGATGTCGCTCAATGA
GTCTCAATGAAGTCCGACCTAGAAGGCCGGAACAAT	TTCCGGCAGCATTGAGGTCAAATATCTGCACGAGAT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	ATGATGCGATTCAGCCGGGGCCGGTACGCCTCCGAG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTTTGCGCTGGTTCAACGATGCTATCGCGGGGGCGTGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	ACGCCAATGGAGGGGTTAGACGCTGGACCTTGAACTG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TGTCAGTTTTACCCCCCCTAAAACTCCTGGTAAAAA
GTCTCGATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGTGGAAAAATCTGAGAGAGAATCGCGCCTACCGCCTGAG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GAGACTTCCGCACCGACGACGCTTGATGAGACCCTCCC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCCGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TGAGTCTGACCAGGATATGACTTGTCTCACCGGGCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GATCAAGATCGTGCCGAAGATCGAAGGCAAGATCCCC
GTCTCAATGAAGTCCGGCCTGGAAGGCCGGAACAAT	CGGCCAGTACCTGACGGTACGGCTCCCCGACAACGTGA
GTCTCAATGAAGTCCGGCCTGGAAGGCCGGAACAAT	ATACGCGGCCTCCTGGCTGATCGACTCGGGGATGCGA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGGGAGGTTTCGACTCGGGGGATCGTGCCGGGCTGCTCGG
GTCTCAATGAAGTCTGGCCTGGAAGACCGGAACAAT	GCCAGCTGTTGCGGGTGCCCACCACAGTGCACCACAAGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCGGCGACTTCTCGAGAACGCAACAGTTTCTGGCGA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGGGGCTGCTGCGGATCTAGTCATGCTAGACAAAG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACCCAGCAGTACGCAGATCTTTGACTCGCGTTATCAA
GTCTCAATGAAGTCCGGCCTAGAAGACCGGAACAAT	GCCTCCATCCGGTAGAGACCGTCCCGACGGGTCGCTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGGCGAGGGAATCGCGAAATGGCCCATCCAAGCCAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CGGTATGGCTTTGGGCTACAAACCCCGGGGATCCCATT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGAGACATGAAACCTCCCATGAGTTATGCCGGCGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TTATCTGAGGCGTTACAAAAATGAGTTGCGCACGATA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGCCGCTGTCGGAAAGGTGAATCGTGGCAAACAACGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CAAGATCGAGGACATCTACGTCGGCCTCATCGAGGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCCTCAAAATCGCCCTGAAGCTTTTCAGCAACATT
GTCTCAACGAAGTCCGGCCTGGAAGACCGGAACAAT	CCGGTCCAGGCCGAGCCCGAGGGCACGGGCGACAGCGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCCGAAGTGAGCATCCCGCCCGAGCTGCTTGGGTTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TACCTTCCACCACGATGTTTTTCGCTCCGAGGAAC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TGGGCGAACCGTCGGAGTGGCCCGGCCCGATTTGGGT
GTCTCAATGAACTCCGGCCTGGAAGACCGGAACAAT	AATACAAGGAACAGCAGAAAGAGATTCGTAAGGCTCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACCCCCGACGTTGCCAACCTGCTCGGCATCCACCGCACC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATGGAGGCCCCCTGCTCGAAAGAGGGGCGGATGTGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCCCTCGATGTACTGCTGGTCCGTCGCGGAATAGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGCCTGTTACTCTGTCCTGCTACCCGGACAAGCAGGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATCTGATCAGGAGATATTAAATGCAGAAAGCAACCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTTGAATTTGTCATGGGAAGTGAAGGACCACCACAC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCTGTTGATTGGGGCCAAGGCCATAGCTTTGATGCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATCTTGCTGTTGCCTGCCGCGTCAATGCCGGGCGGGTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CACGCCGAACTCATCCCAGGGCCGCGACCAGCCGACCGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GCTGGTGCCGCGACCTCGAGGCAACCGCCCTCGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AAGCGTTGGTTCTACGGCTCATCAAAACAGCCGCGGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACGTTGTCCGGGTAGCCCTGTACACACCTGCACCCG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TATCGCGCCCATGCCCCTGTAGCGCCCCAGCCCGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGATTGGTGAGGAATTCTGTTGGATTCCCGTACATGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGAGAGGGCCTGCCATATCTGGCCGGGTAGGTTCCG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CGGCCACAACCCGCAACTCCGTGCCGTACCCGGCTTGCGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGTCGGTTCCTCGGCCGGCCTACCGCAGGCCCCGAGAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGCCACCGAGCTTGGCGTAAGGAAAGTGTTCATGAAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CAATGGATAGGGAGAAACCCTGTGTGGTCTCATATTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGACCCGGAATTGGTCACCGAGGCCTACAAGAAGATC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACTAGAAGGACAGGTAACAATGGCAGACAACTATGCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTCTTGCTGATATGCCACAGCCTAACTCGAGAAACAG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGGGCGGACCGATCAGGCATACGCTGCCGGTGTGACCGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTATGACAATGTGATCGGCACTCTGGACATGCAGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTGACAGTATGAAGTCCCCGTCAAAGGCCAGGTTGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AAGAATACACTGATCCCAGCTTGTGGGCGTTTTCCGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGTACTGGGATGAGCACCCCTATGGGGACGGATCCGTCCCTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TTGGGGCGGGCTCACTTCATTGGCCCTAGAAGGCCGTCTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCAGCTGAAGCGGAAGGACGGTGCCGGCGCCACCAGC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCGCCGAGTGTGTCGCGGGCCCCGGCGGGGGCTTCACG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACTGGTACTGGTGGGTATGTGAAAGGGCGAGACTACAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGATCACTTCGTCACCGTCATGGATGCTCTGAAGAAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GATCGGCTCCGACTCCCTGGCAGCGTTCAAACGCTTCAC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CCCAGACTTCCTGACAAACGAAGGAACAGTCACACTACTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TAGGTCGGGTCCGGGTGCCCCAGGCCCGCGACCAGGCTGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GAGGGGGTGACCAGGGATTGTTTCAGGGAGTACGTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TTCCAACAGGCCATGATGGGCATTGACGCGTCCCAGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGTAGGGGCGGTGACGTCGGGCACCTGGATCTTCGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AGCGCGAGACTTACCCGACCTGGATCTACAAGAAGCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGGCTGAATGATGGCTACAACCACTTCCTGCTGGA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGGTGCCCGTTGGCGGGAACTCGAAACCGCAGCTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AGTTAAAGAAAAGTCAAACAAGAAGCGCGAGTTCCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	AGAAAAAGACATTGCCCCGCTGATCGAAAGTCTTGTT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGTGCCGGCCATTGTGGCAATGGTCAACGCCATGAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTCAACATCCCGAACGCTCAGGCCATTCTTGTGGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATAACTATGGTGGTGTCTCGCTCTCCTGATGTCTTCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCCGGGGTGGCACATACGGCAGAAGTGGCGCTGGTTTG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACACCCAACCGTCACGCAACAGGCGCGACAGTAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	TCGCGAATGCGGTGCTGTTCACGAGCGACAATGTTACGG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ATGAATCTGAAGTGTTTTGCAGACGTGCGCGAAAAGAT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGCATTTTCTCCCGGGTTTCCGTGAGAATCTCCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CGAGTCATCAATGGTATAGAGAATCATATCCTCCA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTGATAAACAGATGCATCTTGTCACGCTTTGAATGCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GTCCATCAGGCCATTCAGTGCCTGGATGTGGGGTATGTC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	GGATAGTTACCATGACTTGGACATGCAGAGACTGCAA
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGGCAGCGGGCACCTCCGCAGCGGCCTCAAAGATGT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGTCGTTGATGCGGATGCCGGCAAGGTGAAGTGGCC
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	ACGACAGAGGGGGCGACTCCCGAACCAGAGAATCAG
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT	CTGCCGGGTCTGCACCCGTATCGGGTGCGGAAGCTGCT
GTCTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT

>NC_018142|9|2|2959075-2966217|PILER-CR
CTCAATGGAGTCCGACCCAGAAGGCCGGAACAATGA	GGAAAAATGTTTCTTGGAAAGAAACAAAACGGCGTCCCGT
CTCAATGAAGTCCGGCCTAGAAGACCGGAACAATTT	GATCCCAATCTGCTGCCGCGTTTGAGACACGAATTGT
CTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGC	CTTGTTGCGTACCCAGAACCATTTTGAGCGAGATTTGT
CTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCC	ACGACGGTCACGTCACGGTGGCCGTGCGGCGCTCCGT
CTCAATGGAGTCCGGCCTAGAAGGCCGGAACAATCT	CACTGATGCCCAGGTTGAGATGCTCTGGTTGTTGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGA	ACTCGATCGTCGGGCACGACGTGATGTCGCTCAATGAGT
CTCAATGAAGTCCGACCTAGAAGGCCGGAACAATTT	CCGGCAGCATTGAGGTCAAATATCTGCACGAGATGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATAT	GATGCGATTCAGCCGGGGCCGGTACGCCTCCGAGGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCT	TTGCGCTGGTTCAACGATGCTATCGCGGGGGCGTGGGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATAC	GCCAATGGAGGGGTTAGACGCTGGACCTTGAACTGGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATTG	TCAGTTTTACCCCCCCTAAAACTCCTGGTAAAAAGT
CTCGATGAAGTCCGGCCTAGAAGGCCGGAACAATCT	GTGGAAAAATCTGAGAGAGAATCGCGCCTACCGCCTGAGGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGA	GACTTCCGCACCGACGACGCTTGATGAGACCCTCCCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCC	CGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTG	AGTCTGACCAGGATATGACTTGTCTCACCGGGCTTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCC	CGCGTGTCGCCCAATGGCTCGGGCTCCGAGACGACAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTG	AGTCTGACCAGGATATGACTTGTCTCACCGGGCTTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGA	TCAAGATCGTGCCGAAGATCGAAGGCAAGATCCCCGT
CTCAATGAAGTCCGGCCTGGAAGGCCGGAACAATCG	GCCAGTACCTGACGGTACGGCTCCCCGACAACGTGAGT
CTCAATGAAGTCCGGCCTGGAAGGCCGGAACAATAT	ACGCGGCCTCCTGGCTGATCGACTCGGGGATGCGAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	GGAGGTTTCGACTCGGGGGATCGTGCCGGGCTGCTCGGGT
CTCAATGAAGTCTGGCCTGGAAGACCGGAACAATGC	CAGCTGTTGCGGGTGCCCACCACAGTGCACCACAAGCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGC	GGCGACTTCTCGAGAACGCAACAGTTTCTGGCGAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTC	GGGGCTGCTGCGGATCTAGTCATGCTAGACAAAGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	CCAGCAGTACGCAGATCTTTGACTCGCGTTATCAAGT
CTCAATGAAGTCCGGCCTAGAAGACCGGAACAATGC	CTCCATCCGGTAGAGACCGTCCCGACGGGTCGCTGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTC	GGCGAGGGAATCGCGAAATGGCCCATCCAAGCCATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCG	GTATGGCTTTGGGCTACAAACCCCGGGGATCCCATTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	AGACATGAAACCTCCCATGAGTTATGCCGGCGGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTT	ATCTGAGGCGTTACAAAAATGAGTTGCGCACGATAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	CCGCTGTCGGAAAGGTGAATCGTGGCAAACAACGATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCA	AGATCGAGGACATCTACGTCGGCCTCATCGAGGCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGC	CTCAAAATCGCCCTGAAGCTTTTCAGCAACATTGT
CTCAACGAAGTCCGGCCTGGAAGACCGGAACAATCC	GGTCCAGGCCGAGCCCGAGGGCACGGGCGACAGCGATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGC	CGAAGTGAGCATCCCGCCCGAGCTGCTTGGGTTCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTA	CCTTCCACCACGATGTTTTTCGCTCCGAGGAACGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTG	GGCGAACCGTCGGAGTGGCCCGGCCCGATTTGGGTGT
CTCAATGAACTCCGGCCTGGAAGACCGGAACAATAA	TACAAGGAACAGCAGAAAGAGATTCGTAAGGCTCTTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	CCCCGACGTTGCCAACCTGCTCGGCATCCACCGCACCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAT	GGAGGCCCCCTGCTCGAAAGAGGGGCGGATGTGCAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGC	CCTCGATGTACTGCTGGTCCGTCGCGGAATAGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	CCTGTTACTCTGTCCTGCTACCCGGACAAGCAGGGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAT	CTGATCAGGAGATATTAAATGCAGAAAGCAACCAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGT	TGAATTTGTCATGGGAAGTGAAGGACCACCACACGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCC	TGTTGATTGGGGCCAAGGCCATAGCTTTGATGCTTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAT	CTTGCTGTTGCCTGCCGCGTCAATGCCGGGCGGGTCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCA	CGCCGAACTCATCCCAGGGCCGCGACCAGCCGACCGGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGC	TGGTGCCGCGACCTCGAGGCAACCGCCCTCGATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAA	GCGTTGGTTCTACGGCTCATCAAAACAGCCGCGGGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	GTTGTCCGGGTAGCCCTGTACACACCTGCACCCGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTA	TCGCGCCCATGCCCCTGTAGCGCCCCAGCCCGCAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	ATTGGTGAGGAATTCTGTTGGATTCCCGTACATGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	AGAGGGCCTGCCATATCTGGCCGGGTAGGTTCCGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCG	GCCACAACCCGCAACTCCGTGCCGTACCCGGCTTGCGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GTCGGTTCCTCGGCCGGCCTACCGCAGGCCCCGAGAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	CCACCGAGCTTGGCGTAAGGAAAGTGTTCATGAAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCA	ATGGATAGGGAGAAACCCTGTGTGGTCTCATATTCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	ACCCGGAATTGGTCACCGAGGCCTACAAGAAGATCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	TAGAAGGACAGGTAACAATGGCAGACAACTATGCTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	CTTGCTGATATGCCACAGCCTAACTCGAGAAACAGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	GGCGGACCGATCAGGCATACGCTGCCGGTGTGACCGCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	ATGACAATGTGATCGGCACTCTGGACATGCAGATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGT	GACAGTATGAAGTCCCCGTCAAAGGCCAGGTTGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAA	GAATACACTGATCCCAGCTTGTGGGCGTTTTCCGCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	TACTGGGATGAGCACCCCTATGGGGACGGATCCGTCCCTCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTT	GGGGCGGGCTCACTTCATTGGCCCTAGAAGGCCGTCTTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCC	AGCTGAAGCGGAAGGACGGTGCCGGCGCCACCAGCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCC	GCCGAGTGTGTCGCGGGCCCCGGCGGGGGCTTCACGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	TGGTACTGGTGGGTATGTGAAAGGGCGAGACTACATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	ATCACTTCGTCACCGTCATGGATGCTCTGAAGAATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGA	TCGGCTCCGACTCCCTGGCAGCGTTCAAACGCTTCACGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCC	CAGACTTCCTGACAAACGAAGGAACAGTCACACTACTGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTA	GGTCGGGTCCGGGTGCCCCAGGCCCGCGACCAGGCTGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGA	GGGGGTGACCAGGGATTGTTTCAGGGAGTACGTGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTT	CCAACAGGCCATGATGGGCATTGACGCGTCCCAGCAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	TAGGGGCGGTGACGTCGGGCACCTGGATCTTCGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAG	CGCGAGACTTACCCGACCTGGATCTACAAGAAGCAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GGCTGAATGATGGCTACAACCACTTCCTGCTGGAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTC	GGTGCCCGTTGGCGGGAACTCGAAACCGCAGCTGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAG	TTAAAGAAAAGTCAAACAAGAAGCGCGAGTTCCTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAG	AAAAAGACATTGCCCCGCTGATCGAAAGTCTTGTTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GTGCCGGCCATTGTGGCAATGGTCAACGCCATGAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	CAACATCCCGAACGCTCAGGCCATTCTTGTGGATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAT	AACTATGGTGGTGTCTCGCTCTCCTGATGTCTTCAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTC	CGGGGTGGCACATACGGCAGAAGTGGCGCTGGTTTGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	ACCCAACCGTCACGCAACAGGCGCGACAGTATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATTC	GCGAATGCGGTGCTGTTCACGAGCGACAATGTTACGGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAT	GAATCTGAAGTGTTTTGCAGACGTGCGCGAAAAGATGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GCATTTTCTCCCGGGTTTCCGTGAGAATCTCCAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCG	AGTCATCAATGGTATAGAGAATCATATCCTCCAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGT	GATAAACAGATGCATCTTGTCACGCTTTGAATGCTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGT	CCATCAGGCCATTCAGTGCCTGGATGTGGGGTATGTCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATGG	ATAGTTACCATGACTTGGACATGCAGAGACTGCAAGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GGCAGCGGGCACCTCCGCAGCGGCCTCAAAGATGTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GTCGTTGATGCGGATGCCGGCAAGGTGAAGTGGCCGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATAC	GACAGAGGGGGCGACTCCCGAACCAGAGAATCAGGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAATCT	GCCGGGTCTGCACCCGTATCGGGTGCGGAAGCTGCTGT
CTCAATGAAGTCCGGCCTGGAAGACCGGAACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014847674.1\|2953102_2953780_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319829
NC_018142.1\|WP_014847671.1\|2951320_2951785_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847678.1\|2956473_2957238_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377194
NC_018142.1\|WP_081490333.1\|2972946_2975451_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NC_018142.1\|WP_041696745.1\|2957345_2957690_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_018142.1\|WP_014847685.1\|2966389_2966674_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_018142.1\|WP_157682483.1\|2968344_2969817_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NC_018142.1\|WP_014847673.1\|2952802_2953099_+\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|377706
NC_018142.1\|WP_051015069.1\|2979756_2980344_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_018142.1\|WP_138158729.1\|2976182_2976986_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_018142.1\|WP_014847687.1\|2970754_2972950_-\|type-I-U-CRISPR-associated-protein-Csx17	cas8u1	cd09767_cas8u1_CAS-I-U	gnl\|CDD\|274989
NC_018142.1\|WP_051015067.1\|2955355_2955820_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235668
NC_018142.1\|WP_014847686.1\|2966677_2968342_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_018142.1\|WP_041696748.1\|2969819_2970758_-\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09738_cas7_CAS-I-U	gnl\|CDD\|378223
NC_018142.1\|WP_157682484.1\|2977146_2977590_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239550
NC_018142.1\|WP_061787698.1\|2955882_2956251_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_081490332.1\|2951945_2952713_-\|DUF881-domain-containing-protein	unknown	unknown	gnl\|CDD\|377575
NC_018142.1\|WP_041697872.1\|2953854_2955342_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_018142.1\|WP_014847680.1\|2957686_2958679_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NC_018142.1\|WP_014847691.1\|2977586_2978090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223788

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014847674.1\|2953102_2953780_+\|HAD-IA-family-hydrolase	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.22726e-45
NC_018142.1\|WP_014847687.1\|2970754_2972950_-\|type-I-U-CRISPR-associated-protein-Csx17	gnl\|CDD\|274989	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc. Members of this protein family are found exclusively in CRISPR-associated (cas) type I system gene clusters of the Dpsyc subtype. Markers for that type include a variant form of cas3 (model TIGR02621) and the GSU0054-like protein family (model TIGR02165). This family occurs in less than half of known Dpsyc clusters.	1.49394e-113
NC_018142.1\|WP_014847678.1\|2956473_2957238_-\|hypothetical-protein	gnl\|CDD\|377194	pfam04016, DUF364, Putative heavy-metal chelation. This domain of unknown function has a PLP-dependent transferase-like fold. Its genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis. This domain is often found at the C-terminus of proteins containing DUF4213, pfam13938. The structure of UnioProtKB:B8FUJ5, Structure 3l5o, suggests that the protein has an enolase N-terminal-like fold and this Rossmann-like C-terminal domain. Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The protein may be playing a role in heavy-metal chelation.	2.44026e-35
NC_018142.1\|WP_081490333.1\|2972946_2975451_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.9823e-35
NC_018142.1\|WP_041696745.1\|2957345_2957690_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	5.64529e-15
NC_018142.1\|WP_014847685.1\|2966389_2966674_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.09011e-19
NC_018142.1\|WP_157682483.1\|2968344_2969817_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	5.94015e-27
NC_018142.1\|WP_014847673.1\|2952802_2953099_+\|cell-division-protein-CrgA	gnl\|CDD\|377706	pfam06781, CrgA, Cell division protein CrgA. CrgA is a trans-membrane (TM) protein, first described in Streptomyces as being required for sporulation through the coordination of several aspects of reproductive growth. In Mtb (Mycobacterium tuberculosis ) CrgA is a central component of the divisome, and consists of 93 residues with two predicted TM helices (TM1: residues 29-51; and TM2: residues 66-88). CrgA facilitates the recruitment of the proteins essential for peptidoglycan synthesis to the divisome and also stabilizes the divisome. Reduced production of CrgA results in elongated cells and reduced growth rate, and loss of CrgA impairs peptidoglycan synthesis. CrgA has homologs in other actinomycetes.	1.88002e-28
NC_018142.1\|WP_051015069.1\|2979756_2980344_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.38598e-08
NC_018142.1\|WP_138158729.1\|2976182_2976986_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	0.00996052
NC_018142.1\|WP_051015067.1\|2955355_2955820_-\|hypothetical-protein	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0.00301651
NC_018142.1\|WP_014847686.1\|2966677_2968342_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.65265e-105
NC_018142.1\|WP_041696748.1\|2969819_2970758_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	7.30067e-42
NC_018142.1\|WP_157682484.1\|2977146_2977590_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	1.18573e-13
NC_018142.1\|WP_081490332.1\|2951945_2952713_-\|DUF881-domain-containing-protein	gnl\|CDD\|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	6.98095e-52
NC_018142.1\|WP_041697872.1\|2953854_2955342_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_018142.1\|WP_014847680.1\|2957686_2958679_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	2.84671e-87
NC_018142.1\|WP_014847691.1\|2977586_2978090_+\|hypothetical-protein	gnl\|CDD\|223788	COG0716, FldA, Flavodoxins [Energy production and conversion].	7.06825e-05

>NC_018142.1|WP_014847680.1|2957686_2958679_+|cation-transporter
MSEHHDHDTHEHEHHDESRDHDHHGHGHSHNHAHGSTNRKRLGIALGITGLIFAAEVIGAIVTDSLALLVDAGHMLTDSLGLVVALIAATLMKRPPSERHTWGWQRAEVLSAGAQSAILLCVGGYAIYEGVLRLFAPPEVEAGGVAVIGVVGLLGNVASLLVLMGGKDSNLNMRAAFLEVLNDALGSVAVIVSAVVIALTGWTRADTIAGLLVAALIVPRALKLLRESGSILLEATPTELDLTKVRQHLLERPHVKEVHDLHASVVSTELPILTAHVVLADECFTDGHSQEILADIQECLIKHHEIRIEHCTLQLESEKVAEKHKEHLHA
>NC_018142.1|WP_041696745.1|2957345_2957690_+|winged-helix-turn-helix-transcriptional-regulator
MTMKETETSDTEMAATLFRSLADPNRLAIVKHLMLSEHRVADLVGHLGLAQSTVSAHVRGLRDSGLLTARVRGRATFYSLAEPELTTNLLAAADDLLVATGEVPVICEPEVEAP
>NC_018142.1|WP_014847678.1|2956473_2957238_-|hypothetical-protein
MPNPWEIYDALTDAIPEEVTLTTVNVGAQWTRVINSAGGIGMAWTMNVKTRPDIFPGVTLDGIPLREAAGLIRSWNLAESSIGQAAINSWHSSPETAEANGFVPTGQGINWGMVFDPYATDVAGKKVAVVGHFPFAQKALEAAGEYICLERNPQPGDYPDSACEYLLPECDYVFISGSAFVNKTAPRLIELSRNAHTVLVGPSVPLNPLLFDHGVDTITGFVSPNPQQLDRALAGVNMKGMFAAGYRVHQHRPA
>NC_018142.1|WP_061787698.1|2955882_2956251_-|hypothetical-protein
MYLKFALIGVVVGSVGTWFVGQWLNQKRPRVKLARWMEERRKELCSLVDQGQFQLAPGVPLPASAEEGYAQVEQKVQQEASEVLPKMTNQHSLYWVPLHWEGIWTGSAALIYFVASFFMSWP
>NC_018142.1|WP_051015067.1|2955355_2955820_-|hypothetical-protein
MIIFRGWGLLGAAFPALTAFALGALPASMYGSKSAITNIVAALGALVGGALGFLCGRWLNVIRPRAKVAEWQEHRRAELRARVDAGQFQMAPGLQAPSSREEGYAQVEQLITNESPDVLRQLKNIHTLFFIPMQWFAIGAGVVIFFGALSTALR
>NC_018142.1|WP_041697872.1|2953854_2955342_+|lysine--tRNA-ligase
MDSEQTTVRKEKRARLLAAGSDPYPADLVRSHTLLQVREGWGHLEAGEETDDVVQVGGRVVFIRNTGKLAFATLQDGFTPGDNGERLQVMLSLAEVGAEALAAWKSDVDLGDHVWVEGRVISSKRGELSVMAKRWRMASKALRPLPVLHKELSEESRVRRRYVDLIAREDARAMVRNRAAITHAIRDTLYRQGYMEVETPQLQLVHGGAAARPFTTHLNAFDIDMSLRIALELHLKRTMVGGADRVYEMGRVFRNEGIDSSHSAEFTMLEAYQSWGDQRTIAQLIQDIIVAAADAVGSRQVETDRGTIDLDGQWRWLPFFDGLSEAAGREITVETSLEELRAVADEHEVEYDPKWNAGKLSLELFGDLVEPGLIQPTFVHDYPSLAQPLARPHRSEPGKIEAWDLIIGGMERGTGFTELIDPVIQRDVLVRQSLAAAAGDPEAMQLDEDFLEALEYGAPPMGGLGLGIDRLVMLLNPGAGIRETILYPLLRPSAG
>NC_018142.1|WP_014847674.1|2953102_2953780_+|HAD-IA-family-hydrolase
MGWERAGGEAVGLFDAVILDHDGTIVDSRDAMVRAYTRWAGEYGVNLNEMPKYMGMPSRALAEALVPDAKHWDEAAERIEELEVSDTAGVIPMPGAVDAFRVLPGDAVAVATSCTQTLLDARLNAAGLPHPRVVVTRDQVERGKPAPDSFLLAAKRLGVEPSRALVAEDALAGIAAARAGGFPTLGILSTHTADALRADVHVTDLSQVTWDVSDEGIRVIVHDAR
>NC_018142.1|WP_014847673.1|2952802_2953099_+|cell-division-protein-CrgA
MPESKVRKEAKSKARKKQSEELEKTRKERRDRKRLAANTERRWVPWVFIPVGLLGVLWMVTWNLAGNYIGFMRALTEWNILIALGLIIACFSLMTLWK
>NC_018142.1|WP_081490332.1|2951945_2952713_-|DUF881-domain-containing-protein
MSETRLTRLLRRIRGPRSDENPRSLRGRVGTGIICVLAGTMLTASALAARGTDLRSDRNTDLRGLVATQAQRNEQLRKEVAEVRSEVEELGHKQGASPELERQQRAVAEQAAAVPVTGPGMRVTLTDAPTDVKPAGVDDDALVVHQQDIQAVVNALWKGGAEAVSIQGQRIITTSGIKCVGNSVVLHGIPYAPPYVIEAIGDAGRMAAALKESRALTIYRQYADAYGLGYKETKESSLSLPAFQGALGITHAKPK
>NC_018142.1|WP_014847671.1|2951320_2951785_-|hypothetical-protein
MVDREVHGGFVSWSRRGVLLVGVGLLAGCGAVDDLVEDRSQLPVLLEDPMAAENLLGLTLKEGSESGYRRPLGKPEFTEVRRVFSLGDDDRQEVFDRAVAFAKESGWKKEFESGLPLNMVWNGQKNNPRCECGVFISDNDTADLMIRLRVFDEP
>NC_018142.1|WP_014847685.1|2966389_2966674_-|CRISPR-associated-endonuclease-Cas2
MARRRYLISYDISDPKRLRATFNLMKGYGKWLQYSVFVCDLSKAELAMWERDIRDVIALAYDSVVVIDLGAPQDADIRMLGVPRRLPDEGPVVV
>NC_018142.1|WP_014847686.1|2966677_2968342_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTQGEYSAEPQLVPARMLNELVYCQRLFHLEWVDGRWAHNDDTIQGSVAHDATDRRSGRMPAPDEEEKPFTSIQVALSDPDLGVTAVIDRVDHEDGSSSPVDMKKGSGPRDGGMWPADRVQVLTQAVLLRRAGYSVNRADISYLGSHHRASIEVGQDAETEVRELVALARKVAAQELPPPPLLNDPRCLRCSLAPLCMPDETNYLLERSGEQPRRIIVKNPDARPVYVNTQGASVKVSGGRLLVAVKGETVAERRLLDVSQVCVVGNVQITTQALRALWRRGAVVIWLSYGGWLDGWSQGPMNGHVTLRRRQVLASVHGLRFAQQMIRGKIHNQRVLLRRNAKVSLDDSVLEQLKELEAKTESAASLETLLGIEGTAARLYFGQFHKLLSPRLEVAAEFQAHGRARRPPPDPVNAVLGFCYSLLTKDLIAVLTGVGLDPFLGVLHQPRYGRPALALDLAEEFRALVAESVALQCINNGEINEKSFMRGHLGVALTADGRRSVIQAHERRLETELKHPLFGYQVSYRRVLDLQARVLAASFTGELDSYTPLMTR
>NC_018142.1|WP_157682483.1|2968344_2969817_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MPTQVALRFVTGKYHANGWDHALNEGISEWPPSPWRLLRALISVWHTRCDDIPEEMIDDLLTGLATEPPEYLLPAARPSQTRHYMPNPDFLEGVKHSTSLQLDPRLNLDGEAEVVIRWPNLTLPAGQRDALERLLRKLPYLGRAESRCEAWLLSDEHSQQEKGWVRPSETGNTQVLVPEPGVTRKQLETSSLEMRKARLRYPSGSRWVRYELPGEALSAPAHCEVNDLLRPTTVRWRLEPTAPFRVEDGILAAHGLRGRILGTKKENTDLREQGSGVEALAGHHGVFDDGPQHRHPHWLWLPTLGAGGELTGQVEDLVLWVPDGIPADTLSRLAGARYLPRWSNAPKGYRSGAELHLQLMGPVDTVMHEYTSADATTWVSVTPFLTDRFPKQNKPREEFAQKLVERELGFRHPGGTPPVRVKLLADWENRDVVRFRRYRWNESMARRRRGMLLRLDFDEPLPKGLGERPEPLVLGSLSHFGFGLFRPVER
>NC_018142.1|WP_041696748.1|2969819_2970758_-|type-I-U-CRISPR-associated-protein-Cas7
MTSTVLNLTLRPVVGFRFQPTGFPDLGAATYQAHVSGEGWVQALHLESPQSMANRLELCTWDPAANDQAEALRGLPYVRVVDAGGGFLTSSRLEAHRLASAYLMDAKIDGGTGRVWLEDRLGLVKGRLVDHRALAKAIFDLDPVSLIHGVFFAQKQWPSQPKIARAITCFIDALDVRPAVSGGVKTDSVNPSNDEGRGAKEGYGMVPHQRVEYTARDITASVVVDHGQIKSYGLGEKSEAVLNALVDFELASLFRQDGLRLRTACHLVVDQDCEDLAKIPTLDEATAKLRQAIDQHGDLAPISELKWTGGGK
>NC_018142.1|WP_014847687.1|2970754_2972950_-|type-I-U-CRISPR-associated-protein-Csx17
MTTHVFPGLGCVPLINYLAALGVAKGVSEQADPAARFGWRAGVFRMDTEVEDITEFFVRDFVPTPVFSPWNAGSGFGEKDKTPLKYIRMLESSTTARLTSYRDTLAVIRLVLTAKSGKGWSKERLVQELRNRLPDDALPWMDASVVLTAKKTEYPPILGTGGNDGRLDFSTNVHQRLVDVLPELGAEPERSRAWMRDLLWGRSTEKLLAASVGQGDPAGAGTPGSSAFGSADAMVNPWAFILMVEGAMLFAASAAKKLGEQNSRVAIPFTVSSSPDGPIPGSANEDGRGELWAPLLESVTLAELRQVFEEARVSWDGGTANNAVAMYAAAHSFGVNRGISAFQRFGFLKRNGLAFVAVPLDHVEVRSRPEVIMAREPLRRARTFHGASGAASQSAARRFDASVTAFVRKPEWRNGIAMLRAQTELELTALRSRKNREELGRPSKLVPASAVIPVCRELFLNIPEARIAAGIASATFLPPGASQQNEESGGQPIRRLLVGADPKNPKDPINPEVMVPGLGARPTVDVLADLMVWLAQHPGEDTRLARGWLPFLRHRYPVSWTDTHAWAGGLLDDNLVTHHLLAFLAVDWSGRNYADIVKSDGECLFLDPTLAILQALASGSVRVRETAPDATGVVVGLEPGWSLQLRADRVADVHRAASGVISRGTIRLPRTGETDIQVHTHSARISRPGLGPRILAALAAPSSQRALKRSAPEVENTEPYETTDLYEGALQ
>NC_018142.1|WP_081490333.1|2972946_2975451_-|CRISPR-associated-helicase/endonuclease-Cas3
MMRFSNFTECFRRATRSEGTPDGCDPYRYQVRLADEGFPDALRAPTGSGKTAVVLAYVWRLLFHPDASVRAATPRRLVVLLPSRTLVEQYEETVRGWLDRLGLLDAVGVHVFMGGRDIRSSQQDWRMNLHRPSIVIGTVDMGVSRGLARGYGAFRASYPIDFALIGNGALMMVDEVQLAPQATATLRQFAAFQRELGTAEPSQLMIMSATIDERVLDTVDNPWQGADVLGIDESSESPELLRRMSAERTIREFPPVDKPKEFAAQIIERHQPDTLTLVVVNTVDAAVDAYREIGKLTPDEPRLLIHSQFRGVERKAQLEKLRGIARDGGIVVATQAIEAGVDIDARTLITEAAPWASVVQRAGRCNRAARYPAGEAVVHWREPAKGHPYDPEQVACAIEALRRAEGMSLTSAQLHRLGDDIPPEDLELRILRRCDFRQLFDTTPDLTGNDIDISCYIRPDKDLDVQLAWIPNGSIAQGKLATEIPGQPLRCGVSMSRAKKLLNRKDIRERRDQRAWTFSIQDDRWIPARADQLRPQQLILVEAGLGGYSIEHGFDPAEKHTVQDHVDADDLRDATTPESVTSSQDAGARGNGWVTLHQHLADTREQAEALAKVLRPAGIDDAHLHAAAVAGVLHDLGKAHYDWARALLDANEDTPPDAPEQLYAKSPGTAPLRVRRELKVGEQKNARVERRSGFRHELISVFMLRTDAGRQLLIDLGVEPELHPLVLYLIAAHHGHIRITARDPRYDGVDGLSFLGCVDKEPINAVTLPGIELPESVVDLGIFRSGPDSWTTNALALLERLGPFRLAYLETLVRMADWRASANLELPVAEGTEE
>NC_018142.1|WP_138158729.1|2976182_2976986_-|helix-turn-helix-transcriptional-regulator
MRERLLAAGVEIVSEVGLDTGLGRLNFEEAIKRAHVARATAYRQWSTKEAFGNAVLVELAKGLYLTSDFVAEVPAIIADMVGDGSALATPQGRRNLIVDLTRTLVKGDFESILQSPSWHLHTALSAASPSLTDPEPRTSATAALHVSDQRRIEARAQLYGQFTAFAGYRLRAPLAGPSGFRQMSEAAGAAFTGFLIRAQYDTTVTAETMRLRAFGMSEPRQWSPQTFASTNGIFSYIEPDPGITWDQERISDLLLTDFTSLFHAPQL
>NC_018142.1|WP_157682484.1|2977146_2977590_+|Rieske-2Fe-2S-domain-containing-protein
MSMYRDGEASPHACTRRTLIHTSLGLGAGATLAVVGLPGCSVERSGDGGPQRVQKSDVPVGGGALAGWYVVTQPTAGTFHAYYAACPHAGVKVNRIEGQEIICDSHGARFSTDNGAVLKGPTKKSLTPAPFTTDGDVLVISMPKETE
>NC_018142.1|WP_014847691.1|2977586_2978090_+|hypothetical-protein
MSTLIIVESYFGNTLQIAHAIADALPNAKLQSFDEAPDAIPDDIDLLLLGAPTHETALPSPKSRHSAATRNSAGSTNRVQPPPQRGLAEWAKHATIPAGTRTITFDTSAGRFATMFGCAAKAAAKQLRTRGFQVERGPSFTVTAGDVLATGQQEQAAQWAASLLSKN
>NC_018142.1|WP_051015069.1|2979756_2980344_+|helix-turn-helix-transcriptional-regulator
MTRARPLPPAERRASLIAATRQLILDHGPEVTTRQVAEAAKVAEGTLFRVFPTRRDLIAATIADHLSPERLADIFAAAPTTTTVDETTEVCLSTAADYVTTFGRFIPRPHRGGDQDEIRFRIMELWEARVCDIAGWMRDRLAPHEAELTIPVKDFTHLVITLAMGYAHGRSPDTSLNPATLARLALDGARRKDSL

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Crispr_ID: NC_018142_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018142_10

3344729-3344813

Orphan

Consensus_repeat	Method
TCGAAACCATCCCGCCCCAAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018142_10

>merge|NC_018142|10|3344729-3344813|CRISPRCasFinder
TCGAAACCATCCCGCCCCAAAGCCGGTTGAGCCGACCCGCGAGCGCCAGCGAGCAGGTCGCGTCGAAACCATCCCACCCCAAAGC

>NC_018142|10|10|3344729-3344813|CRISPRCasFinder
TCGAAACCATCCCGCCCCAAAGC	CGGTTGAGCCGACCCGCGAGCGCCAGCGAGCAGGTCGCG
TCGAAACCATCCCACCCCAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018142.1\|WP_014847988.1\|3341776_3342229_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847992.1\|3348498_3348969_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NC_018142.1\|WP_014847993.1\|3349075_3349597_-\|muramidase	unknown	unknown	gnl\|CDD\|366659
NC_018142.1\|WP_014847999.1\|3353168_3353885_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NC_018142.1\|WP_014847987.1\|3340841_3341741_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224326
NC_018142.1\|WP_014847985.1\|3338290_3338425_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	unknown	unknown	gnl\|CDD\|293556
NC_018142.1\|WP_014847996.1\|3351184_3351679_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847995.1\|3350585_3351059_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847982.1\|3333430_3334651_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NC_018142.1\|WP_041696870.1\|3334652_3336500_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NC_018142.1\|WP_014847990.1\|3342984_3343440_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225557
NC_018142.1\|WP_014848000.1\|3353881_3355156_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|377986
NC_018142.1\|WP_123824008.1\|3345007_3348331_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_110644234.1\|3338463_3340845_+\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|273955
NC_018142.1\|WP_014847998.1\|3352327_3353089_+\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847989.1\|3342311_3342899_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227231
NC_018142.1\|WP_041696872.1\|3336746_3338294_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271366
NC_018142.1\|WP_041698003.1\|3349667_3350156_-\|hypothetical-protein	unknown	unknown	unknown
NC_018142.1\|WP_014847991.1\|3343436_3344696_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_018142.1\|WP_123824005.1\|3355436_3355955_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_018142.1\|WP_014847992.1\|3348498_3348969_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	0.000171976
NC_018142.1\|WP_014847993.1\|3349075_3349597_-\|muramidase	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	0.00644645
NC_018142.1\|WP_014847999.1\|3353168_3353885_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.50793e-73
NC_018142.1\|WP_014847987.1\|3340841_3341741_+\|metallophosphoesterase	gnl\|CDD\|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	2.2011e-47
NC_018142.1\|WP_014847985.1\|3338290_3338425_+\|methionine/alanine-import-family-NSS-transporter-small-subunit	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	4.03336e-06
NC_018142.1\|WP_014847982.1\|3333430_3334651_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.2353e-62
NC_018142.1\|WP_041696870.1\|3334652_3336500_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.28248e-180
NC_018142.1\|WP_014847990.1\|3342984_3343440_+\|hypothetical-protein	gnl\|CDD\|225557	COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown].	4.6285e-40
NC_018142.1\|WP_014848000.1\|3353881_3355156_-\|Mur-ligase-family-protein	gnl\|CDD\|377986	pfam08353, DUF1727, Domain of unknown function (DUF1727). This domain of unknown function is found at the C-terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.	1.25957e-35
NC_018142.1\|WP_110644234.1\|3338463_3340845_+\|PASTA-domain-containing-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	8.2483e-146
NC_018142.1\|WP_014847989.1\|3342311_3342899_+\|hypothetical-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	8.90755e-18
NC_018142.1\|WP_041696872.1\|3336746_3338294_+\|sodium-dependent-transporter	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
NC_018142.1\|WP_014847991.1\|3343436_3344696_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.71158e-28

>NC_018142.1|WP_014847991.1|3343436_3344696_+|MFS-transporter
MTQRAGPTDSHARRVLTVSVAQALNAFGSGIAPIAVAFALLGDRDGVAKFSAVLAVGALAPVVMTLAGGVLADRGRSPIRTTQVLRCLAGVVQVLLWVGLLHARSSIVVIGGLLFLGEALSSLTLPSSRRMIAEVVEGEELTRAVATQATLVNLARIASPAVAGVLISVVSAEVAVLVDAATFLLSAALLQTVGKGVGSTGGGGEPDAGVSAGGFRALLRGSPWLVACAVCGFLAAGAWLSGYQLLGPVLAARSYGGAAGWAMFSTAYVAGLLVGGVVTRWVPDSKPLLVSSVCSAAAAVAFLPPGLGLPGAVVVAGFFLAAVALGMAMNLWFVGCVKALPKRFLGRAMAVSSSSELAGGFVLIWACGLLLPHVSPTLLALACAGVLLLSGIAQVWALSVWPPTPTARTTAEGDPPQAG
>NC_018142.1|WP_014847990.1|3342984_3343440_+|hypothetical-protein
MTGRRHTGFVSAPPDICPCDTGRPYETCCGPLHEGSRPAATAVALMRSRYSAYALGLRDYLLETWHPNTRPESIDPEPGLRWTGLTIEHSGAGKAWDEEGMVAFSATWEEGDQTGTMREVSSFLRVDGRWFYVNGIPHAAGHHTPEEHEKT
>NC_018142.1|WP_014847989.1|3342311_3342899_+|hypothetical-protein
MSRQAGLLNQDLLILQQFRSGFSPEFDILDDQGRVVGMVAGTEGGARRFFLGPREFDVLDADGSRLAHLSDVRDFWRDTYEIVRGDGSMLATVARKVAFFSRRFSIALSTGEEFMVEGNFFDREFNVVNANGGGAVAQVSRERAGFAKAFLGHDRYALYYPPGTFPDRRLAILGSMIALDLMRAKDARSAANNGA
>NC_018142.1|WP_014847988.1|3341776_3342229_-|hypothetical-protein
MNPLSAEDFIAWADRLARLPWPLTLDAFRGTAIGFGWSPTDRPWEFVVDFTSGPRRMVLFGGRSGGIHNMSFPLIKPPGESAEDAAQLNELFVSYETTGTQAWGKPFYTDPSEDPTVAWRLPNHTVAEIVGGPDMILSTFFTPQGSFIYG
>NC_018142.1|WP_014847987.1|3340841_3341741_+|metallophosphoesterase
MTTPFRVAKGLATVAAGCFAWGLVEATRFRVRHVTVPVLPPGGSELRILHLSDIHLLPGQQLKLNFLRSLAELEPDLVINTGDNIASDTATWPLMSALGRLQEVPGGFVFGSNDYHKPEFKNPLCYVIQGRSELSGTPERLATEQLRAALTRSGAWRDLNDRRAIVEAGGYRIELRGTDDAHHDLDHYPAVVGPPSDGVDLSLGVTHAPYRRILDAMTADGVELILAGHTHGGQVCVPGHGALTTNCDLPTDRVKGLSEHRLEGHHAWLHVSAGIGTSPFAPYRFACPPEVTVLTLVAR
>NC_018142.1|WP_110644234.1|3338463_3340845_+|PASTA-domain-containing-protein
MKTRAPRSKGKSVAMFLAVSVLCGLLLSGLAVPFVALASGFTKAASDNMQYLPAEFETPPQSEKSKILMADGSELATFFEENRTYVALEQISPLMQKAQIAIEDHRFYEHGAIDIQGLGRAVIRTLSGSTQGASTLTQQYVKQVQIEAAKDRGDEEGVQAAQAVSIDRKIREMRYAMAVEERFSKNEILERYLNIAYYGDGAYGVEAAAHHYWNTTAKDLTLAQAAMLAGIVQNPVAFNPVKNPEKAIERRNQVLKRMASSEVGAITKEEADAAMQEGFDKSNLQTTPNGCTASQFPILCDYVVRTLTSDQMPSLGSTAEERTNRLKRGGLTIKTLIDPEAQQAAEAAVSQTVGAKDPVWGGSVLIQPSTGLITAMAQSRTKLGSGEGETWQNVNVSTQYGGIEGFQPGSTFKPFVIGAALEQGVPTSTTFDAPQTMQFKGQKFKNCEGTFTFQGSWEPKNYDKAYGVIDMLKAAQNSVNTYFIQLEAKVGICASIDMAQKLGVKLADGTDMRSMANYPSWVLGTAYVTPLSMAEAYATFANRGVHCNPIILQSVQAKDGTEIEIPSADCKKVIEPEVADGVNHVLSTVMTQGTGTRARMSDGRPQAGKTGTTDDAMSVWFAGYTPDMAGVSYIAVDNINPYYQNHRKSIDGMRLSTGTVLEGSGGKDAGGIWRAAMSAALKNVPHTSFEAPNQRVLEGEKVPIPSVAGMSYEQAKQTLEDAGFTTAKMEVFSPQPAGTYLGKISPSGSAAKFSTIRMQFSKGPQPTTAPTVGAPPVPSPGQPMPTTVPTGER
>NC_018142.1|WP_014847985.1|3338290_3338425_+|methionine/alanine-import-family-NSS-transporter-small-subunit
MSAAAIVMMIVAILTLWGGLAAATVSLFRRPDLSALDDEVPQEA
>NC_018142.1|WP_041696872.1|3336746_3338294_+|sodium-dependent-transporter
MEKRAPRQESFNSRNYFILAAIGSAVGLGNIWRFPYVAFKNGGGAFILPYLIALLAVGIPLLFFDYALGHRYRGSAPLSLRRMGRWTESLGWWQVMVCFVIGIYYAAIIGWAGMYTLFSINQAWGSDPKTFLMRDFLHVADTPGVGLDFVPSLFIPILVVWAVTLITVALGVNKGLAMVNKIFMPLLVVMFLVLVVQSLFLPGAGTGLDALFTPKWGALGDPAVWAAAFGQIFYSLSVGFGIMLTYSSYLKRRTDLTGSGLVVGFANSGFELLAGIGVFAALGFMANQAGLGVSDVAGQGLTLAFVAFPTIISQAPLGSLMGVLFFASLTVAGLTSLLSIVEVVVSAVRDKLGIPKVQATLVIGIPMTILSIFLLSTTTGLYFLDITDEFVNKYGILGGALACIIATVWFVRKLPVLRDHLNRFSSFKVGRGWMALVGVASPLVLGYMLINDFIGKLGKPYENYPQHLLVIFGWGMSAALIIIAVVLTLLPWRRSIRTDFDEQNNEHEVSEEVSA
>NC_018142.1|WP_041696870.1|3334652_3336500_-|polysaccharide-biosynthesis-protein
MTTRTGLLRAGLALWDGASWSVAAMALVFARYTLTLARPETQFVIQYVVAAVILQIAIGLITKLYRGRHGIASFEESALLALITLGIGLVLGIFSVFFATPGYPRVVTFTVPLAALVLMAAGRFLFRTVSRSTQHHEGGEPVLVYGAGNAGQQLGRLLAYDPDAPYEVVGYIDDDPAKSNLHVQGAKVLGKRGDMVSIARAHGINKIIVAIPTADRTFMREISELADEAGLETLVMPSTKDLVSGRVGLGDLHQLNVTDLLGRAQIKTNLGEIADYLSGKVVLVTGAGGSIGSELARQLHRFGPKELVMLDRDESGLHGTQLSIYNQGLLDTPNMVLCDIRDVEALDKVFADHRPDVVFHAAALKHLPMLEQYPLEGWKTNTIGTLNVLRASEKYGVQRLVNISTDKAADATSVLGKTKRLAEELTAFYAGKTGRTWLSVRFGNVLGSRGSMLHTFTRQIEQGGPVTVTHPEITRYFMTIPEACELTIQAGAIGRPADVLVLDMGEPVRILDVAKDLIKRSGKDIRIIFTGLRPNEKMHEVLFSDDEDRTPTTHEMISRVNVPALDPELLETVDGSDPESLSRLTHQRNAKEAARMAEEQAHSGLDGINLERPRS
>NC_018142.1|WP_014847982.1|3333430_3334651_-|glycosyltransferase-family-4-protein
MRILYIDHYAGSPTLGMEYRPHAMATEWAGMGAETVLLAGTHSHLRKKNFPDAKPLEPVEIDGVEFRFIRNRAYDGNGIGRVLSMADFVGRGWLAARRIAREVRPDAVIASSTYPFDTYLAQRVAKASGALLVHEIHDLWPLTPIELGGHSPKHPLMWAMAQAEKSAYRNSDAVVSILPNAEPHVRSLGIVTPVIPIPNGIESDAPHEPAPEAFASQVEDLHERGRAVIGYAGGMTNANAMDDFVSAMALIRDEPVTALLLGDGLYRTDLEKQARDSGAHVIFAGSIPKSQVHEALKLCDALYIGSKTSPLYTFGVSANKIFDYMATGVPIINAFASEHSPMVYAGSTIRARGEDPADIARAIREAVSLPAEERARLGELSVAWVREHHAMPVLARQFLDVLGGRF
>NC_018142.1|WP_123824008.1|3345007_3348331_-|hypothetical-protein
MSLPSLPALNRGLPVTSHSSRVHHVVKLVRTHADDPRLPVLLNALAGKSSYHALLAVEAARALGDEDRLRELAKHPSRRVRFRAAACLPLRVKDPQVFAADYAARPIGERRRLRRRIIDEGHHELAAALLAAPLPDRERAGLLIACDSEAVADHMPELGDLVPNLAALANRHPDALLAELRRRLEGAPADRRSAIWWWVAPAARHLARHRPRELALLLAGSEASQGLPPLFRGVAGTLLAAAPEEMARLLAATPDDWAQDGDALRNQVRRHFRELNREQRALILRAERDDDRRVAALLRGLPPGERALAFSDAYEGVELRDREWSEELLDALPRELRETEAARMAALPANQGRGDQLRLAACLALGDAITVAEPCLNSSDADERGAAWRAILASALRSRDPREVVVAFARIEALAGEQDPVRNAATSALAVASGRTLDLIPIERLKKLAGILTDARDTSSATFMNLQGALWRLLVHRAQQGEPVQEQVELLTRLPGSCAAPAVLAAGRVLGVGGKLLLPIPAAAAKTLAAGFSQTLRSEADRGEYDQVNCLAVLLGRDRHDLPEITGILRRAIRSHDPRTIDRAILVWLAPVRTRGERLAGLLKLDPSFATLGHVQADICRHRPDLATILYRKIPISGRLHDETPYIGVAPGPFDGWLPEQSRPYSQALARFVDDETQDRWQRLAAVEVLGRLPWLAPDALEPDSTETVIREAQLTAAFRSPAVEWSLTDFLTVLDTDLASAAMLAATRVVDELPPAETTKALMVVATDQWRKVNVRKQAVRQVARLHRPEAAEMLVDLAMDITVHRDVRLAATAGLIELLDDEWAWEALSEAAAGGREAARVLAGIDPGRMSARHRARFGEILAKTSPEPELVEALPKWVFWTPKITGRIVELLSSEEIPVRQAAVRALSGAGSGLRWGMLLVAVAGIAAAAADEPDDSMEELPNQRLLEDVVAALLPDSPRVRMERRARLKELAAALAAFPHTAWQHWQVLLAATDWNDPLTDLTELAEVVADPLRAREILELTRQTLKELHEARLCGDFAVATEELLARGDAVTGAIALALLGHAGDEVGWDDAWRSRLRTARSHPVPAVAAWAREIHVGSWTT
>NC_018142.1|WP_014847992.1|3348498_3348969_-|peptidoglycan-binding-protein
MTIEKPGFSRRRLLTTAAVGVPAMGLLGAVNLFNAPAAKAAPLATDGYWGFETTRVLQQLYRLNVDGWVLSQPASWAASNPGLAGGWEWVSDDGARGSSVISNLQRMLRVTADGLIGPTTIKAMQGRYGVTQDGVLDEGSLTIMRLQAELNAVNGY
>NC_018142.1|WP_014847993.1|3349075_3349597_-|muramidase
MTVEKPGFSRRRLLTTAAVGVPAVGLLGAVNLFGASAAKAQTVAVDGWWGEATTSGLWKFLRYVVFPHNSLKPNTHIVYQPASQAAANPGLGSGWDWVSDDEAEYNGGSPIIRMMQWWLGMGVSYGNDYDDGMIGPYTISALQNHYGLTADGVLDGPSPTISALQTEINKYVG
>NC_018142.1|WP_041698003.1|3349667_3350156_-|hypothetical-protein
MTIENPGISRRRLLTVAAVGVPAMGALSAVNLFGAPAAKAARLRIDGVWGTGTSLALEEFLGRVVFPGARLNEGGWIRSQAASWAAVNPGLGAGWEWVPDKQANGSATIALMQRWLGAGRDGLIGPSTIRALQAHYGKVTDGVLDDGSPTIAALQDELNRYL
>NC_018142.1|WP_014847995.1|3350585_3351059_-|hypothetical-protein
MTIERPGFSRRKLLSTAAVGVPAMGALSAVNLFGAPAAKANPYVPIDGLWGSGTTAGLQEVLGTPVDGVVSGQNEEWAGPNTALTSGWEWVPASDATGSTVISAMQSRIGVAADGLIGPETIRALAHYLKWSDDSGVLVEPSQVVGSLQGRVQDGWF
>NC_018142.1|WP_014847996.1|3351184_3351679_-|hypothetical-protein
MTMEKPGMSRRHLLRTAAVGVPAMGALSAVNLFGAPAAKAIDLEVDGYWGSATTSALQEVLGTPVDGIVSSQNESWRKYNPALTSGWEWVPGEMATGSTVIAALQSRIGANSDGLLGQSTIRLLQRWVGAPVSGFFDNPRRDRRGNEPSNGVYELQLRLQKGTI
>NC_018142.1|WP_014847998.1|3352327_3353089_+|hypothetical-protein
MDESKWETPLYVTLEEPITVGVLCRCLTNLLLGALLGFALILFSAAPGGSPSGGPAQTPPASILLGLVVPVVIGFLSHGNAAALFSAGTGTLLLVLPLSMAAPLKSMLPWMGGATFIAAGAALLLRHSSPSDDAPRPMGHLKSVAAGIFAGLLACLFLSFRVTPAAALEAGFIPCLAVVAMTLLSFGMVSNGTFLGPIALVITCTAMAVYTNIGKDSFLTAMMFGVIALSAAIPSMTEESREPRILKVPALPD
>NC_018142.1|WP_014847999.1|3353168_3353885_-|glutamine-amidotransferase
MIRIVQLYPRDMNLYGDWGNARVLQKRLEWRGIDAEIVDHNPGDDTDLGSGDIFLGGGGQDAGQDKIQEDLQHHIDELGRLVEDGAPMLLICGMYQLLGRTFVTGEGKTIKGAGILPLDTRAGTDRLIGNITLETPEFGEVVGYENHSGRTYVDDGHEPLGKVLRGAGNNGEDQQEGLRYRNVIGTYLHGPILPANPKVADFLITKALERRGMPTDLASLPVDEVAAKAHRTAKNRSR
>NC_018142.1|WP_014848000.1|3353881_3355156_-|Mur-ligase-family-protein
MPRHTISTMIGKLVKQVARLRGSGSALPGLVVERMDRGYLRRTLEPLPGGVVLVSGTNGKTTTTKVVTELLQAVGYKVFTNRTGSNFSRGVISELLPLVNWRGRLDADIAVLELDEAWAVHFVRQVKPRMSLFLNVMRDQLDRFGEIDTAAEMLAKNAEAATEAVILNRDDPRVYRIRERAKAEAVYFGTTDELLALMPTDDTLKGGQAHANHEARADVLLKAIDGRRATYEIDGTDHVVEMSLNGVYNLINAAAALTLVRRIVGDAVPTQKLLEALGNVRPAFGRGETITYKGVPMELVLVKNPSGFRLSLLSFADGKADNMIAINDNYADGRDISWLWDVDFTPLDSVALVTGTRADGMALRLAYDDVPVGEIEADLQHALDRFAALNPGKPKRIYTTYTAMTALRKLMSGLALGQDQEAAA
>NC_018142.1|WP_123824005.1|3355436_3355955_-|hypothetical-protein
MSEEQSSQETHEVENNQPGQAGVPEGEIIPGETGRDRTDNEKLDDAALRFMADAAYAVAGFAGLVGERARAFYDEQRAEYAKTHPDVESPGAREFLEQLGSHLNRFVDEINKGFRELSDKGREVMKSRPVNPETEKTEPTDPEPAAPEPAEPGPAEPNGEEYGEEYRQPGNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_018142_6	6.1\|694044\|35\|NC_018142\|CRISPRCasFinder	694044-694078	35	NC_018142.1	702058-702092	0	1.0
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NC_018142.1	2761623-2761652	2	0.933
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NC_018142.1	3014844-3014873	2	0.933
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NC_018142.1	3015111-3015140	2	0.933

1. spacer 6.1|694044|35|NC_018142|CRISPRCasFinder matches to position: 702058-702092, mismatch: 0, identity: 1.0

tcgagaccgccatcaaggtggcccgcaagtggggg	CRISPR spacer
tcgagaccgccatcaaggtggcccgcaagtggggg	Protospacer
***********************************

2. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to position: 2761623-2761652, mismatch: 2, identity: 0.933

accagctggttgagccgggctgcgatgaag	CRISPR spacer
acaagctggttgagccgggctgcgacgaag	Protospacer
** **********************.****

3. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to position: 3014844-3014873, mismatch: 2, identity: 0.933

accagctggttgagccgggctgcgatgaag	CRISPR spacer
acaagctggttgagccgggctgcgacgaag	Protospacer
** **********************.****

4. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to position: 3015111-3015140, mismatch: 2, identity: 0.933

accagctggttgagccgggctgcgatgaag	CRISPR spacer
acaagctggttgagccgggctgcgacgaag	Protospacer
** **********************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	572964-572993	7	0.767
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	573007-573036	7	0.767
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	573007-573036	7	0.767
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	572998-573027	7	0.767
NC_018142_4	4.1\|454890\|30\|NC_018142\|CRISPRCasFinder	454890-454919	30	NZ_CP013125	Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence	112152-112181	8	0.733
NC_018142_5	5.1\|651488\|37\|NC_018142\|PILER-CR,CRISPRCasFinder,CRT	651488-651524	37	NZ_CP018235	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed7, complete sequence	96065-96101	10	0.73
NC_018142_5	5.1\|651488\|37\|NC_018142\|PILER-CR,CRISPRCasFinder,CRT	651488-651524	37	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	268793-268829	10	0.73
NC_018142_9	9.86\|2965343\|34\|NC_018142\|CRISPRCasFinder,CRT	2965343-2965376	34	NC_022980	Brevibacillus phage Davies, complete genome	28315-28348	10	0.706
NC_018142_9	9.183\|2965345\|34\|NC_018142\|PILER-CR	2965345-2965378	34	NC_022980	Brevibacillus phage Davies, complete genome	28315-28348	10	0.706

1. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

accagctggttgagccgggctgcgatgaag	CRISPR spacer
gcgagccggttgagccgggcggcgatggcc	Protospacer
.* ***.************* ******.

2. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

accagctggttgagccgggctgcgatgaag	CRISPR spacer
gcgagccggttgagccgggcggcgatggcc	Protospacer
.* ***.************* ******.

3. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

accagctggttgagccgggctgcgatgaag	CRISPR spacer
gcgagccggttgagccgggcggcgatggcc	Protospacer
.* ***.************* ******.

4. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

accagctggttgagccgggctgcgatgaag	CRISPR spacer
gcgagccggttgagccgggcggcgatggcc	Protospacer
.* ***.************* ******.

5. spacer 4.1|454890|30|NC_018142|CRISPRCasFinder matches to NZ_CP013125 (Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence) position: , mismatch: 8, identity: 0.733

accagctggttgagccgggctgcgatgaag	CRISPR spacer
ttgatgaggttgagccgggcggtgatgaag	Protospacer
 . *   ************* *.*******

6. spacer 5.1|651488|37|NC_018142|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018235 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.73

ccttccaacccggcgccgtcctcgaggccgcccacct	CRISPR spacer
gcctcatcaacggcgccgtcctcgatgccgccgaccg	Protospacer
 *.**     *************** ****** ***

7. spacer 5.1|651488|37|NC_018142|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.73

ccttccaacccggcgccgtcctcgaggccgcccacct	CRISPR spacer
gcctcatcaacggcgccgtcctcgatgccgccgaccg	Protospacer
 *.**     *************** ****** ***

8. spacer 9.86|2965343|34|NC_018142|CRISPRCasFinder,CRT matches to NC_022980 (Brevibacillus phage Davies, complete genome) position: , mismatch: 10, identity: 0.706

acacccaaccgtcacgcaacaggcgcgacagtat	CRISPR spacer
ggatgaaaccgtcaggcaacaggagcgacaggtc	Protospacer
. *.  ******** ******** *******  .

9. spacer 9.183|2965345|34|NC_018142|PILER-CR matches to NC_022980 (Brevibacillus phage Davies, complete genome) position: , mismatch: 10, identity: 0.706

acacccaaccgtcacgcaacaggcgcgacagtat	CRISPR spacer
ggatgaaaccgtcaggcaacaggagcgacaggtc	Protospacer
. *.  ******** ******** *******  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018142

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection