CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018178	Melioribacter roseus P3M-2, complete sequence	4 crisprs	cas2,cas1,cas4,cas3,cas5,cas7,cas6,csa3,cas9,DEDDh	2	30	2	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_018178_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018178_1

166811-167014

Orphan

Consensus_repeat	Method
CTACAGGCTGCCACTCTGCCTCCGTCAGTTGACGGATGAGTTACGCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018178_1

>merge|NC_018178|1|166811-167014|CRISPRCasFinder
CTACAGGCTGCCACTCTGCCTCCGTCAGTTGACGGATGAGTTACGCCCGCATATTTTTTATGTTTTTTATTTTTTCCTACAGGCTGCCGCTCTGCCTCCGTCAGTTGACGGATGAGTTACGCCCGCTTAATTTTTGTCACTTTTTTATTTTTTCCTACAAACTGCCACTCTACCTCCGTCAGTCGACGGATAAAACAATTTTTC

>NC_018178|1|1|166811-167014|CRISPRCasFinder
CTACAGGCTGCCACTCTGCCTCCGTCAGTTGACGGATGAGTTACGCCCGC	ATATTTTTTATGTTTTTTATTTTTTCCTACAGGCTGCCGCTCTGCCTCCGTCAGTTGACGGATGAGTTACGCCCGCTTAATTTTTGTCACTTTTTTATTTTTTC
CTACAAACTGCCACTCTACCTCCGTCAGTCGACGGATAAAACAATTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018178.1\|WP_014854808.1\|169639_170668_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_018178.1\|WP_014854812.1\|172722_174291_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
NC_018178.1\|WP_041355661.1\|172340_172733_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
NC_018178.1\|WP_014854810.1\|171588_172248_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NC_018178.1\|WP_041355659.1\|167447_167855_+\|M50-family-metallopeptidase	unknown	unknown	gnl\|CDD\|315961
NC_018178.1\|WP_157867460.1\|159099_159912_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014854798.1\|148352_149849_-\|glycoside-hydrolase-family-30-protein	unknown	unknown	gnl\|CDD\|307945
NC_018178.1\|WP_014854804.1\|162821_165344_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NC_018178.1\|WP_014854799.1\|149970_154107_-\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_018178.1\|WP_014854796.1\|145963_147334_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NC_018178.1\|WP_014854797.1\|147469_148351_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014854801.1\|155929_159103_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350679
NC_018178.1\|WP_014854800.1\|154339_155557_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376273
NC_018178.1\|WP_014854803.1\|159984_162594_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NC_018178.1\|WP_041355663.1\|174295_175726_-\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NC_018178.1\|WP_014854805.1\|167109_167415_+\|M50-family-metallopeptidase	unknown	unknown	gnl\|CDD\|315961
NC_018178.1\|WP_014854806.1\|167776_169084_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341035
NC_018178.1\|WP_014854795.1\|144872_145967_-\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693
NC_018178.1\|WP_014854807.1\|169055_169562_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|273891
NC_018178.1\|WP_014854809.1\|170664_171462_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045

Protein	Function_ID	Function_description	E-value
NC_018178.1\|WP_014854808.1\|169639_170668_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	7.12394e-23
NC_018178.1\|WP_014854812.1\|172722_174291_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.04229e-81
NC_018178.1\|WP_041355661.1\|172340_172733_-\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	9.63338e-10
NC_018178.1\|WP_014854810.1\|171588_172248_-\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	2.9142e-18
NC_018178.1\|WP_041355659.1\|167447_167855_+\|M50-family-metallopeptidase	gnl\|CDD\|315961	pfam13398, Peptidase_M50B, Peptidase M50B-like. This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B.	3.62295e-06
NC_018178.1\|WP_014854795.1\|144872_145967_-\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	2.2646e-112
NC_018178.1\|WP_014854804.1\|162821_165344_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.56715e-90
NC_018178.1\|WP_014854799.1\|149970_154107_-\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.50174e-44
NC_018178.1\|WP_014854796.1\|145963_147334_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	2.2903e-143
NC_018178.1\|WP_014854807.1\|169055_169562_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	5.93842e-49
NC_018178.1\|WP_014854801.1\|155929_159103_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350679	cd17921, DEXHc_Ski2, DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins. Ski2-like RNA helicases play an important role in RNA degradation, processing, and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.2941e-44
NC_018178.1\|WP_014854800.1\|154339_155557_-\|hypothetical-protein	gnl\|CDD\|376273	pfam18854, baeRF_family10, Bacterial archaeo-eukaryotic release factor family 10. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome.	5.40686e-17
NC_018178.1\|WP_014854803.1\|159984_162594_-\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	3.71972e-42
NC_018178.1\|WP_041355663.1\|174295_175726_-\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	5.66478e-146
NC_018178.1\|WP_014854805.1\|167109_167415_+\|M50-family-metallopeptidase	gnl\|CDD\|315961	pfam13398, Peptidase_M50B, Peptidase M50B-like. This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B.	2.38128e-15
NC_018178.1\|WP_014854806.1\|167776_169084_-\|MFS-transporter	gnl\|CDD\|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.65972e-96
NC_018178.1\|WP_014854798.1\|148352_149849_-\|glycoside-hydrolase-family-30-protein	gnl\|CDD\|307945	pfam02055, Glyco_hydro_30, Glycosyl hydrolase family 30 TIM-barrel domain.	7.12858e-86
NC_018178.1\|WP_014854809.1\|170664_171462_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	6.59712e-100

>NC_018178.1|WP_014854804.1|162821_165344_-|DEAD/DEAH-box-helicase-family-protein
MPDKEAKSRIKINKLLEEAGWRFFDTEEGKANILLENNVKITERRLNEFGENFERTTNGFVDFLLLDDRGFPLVVLEAKAEDKNPLFGKEQARRYAEAQHCRFVILSNGNIHYFWDLERGNPHIISKLPSLQTIKGYETFKPDRNRLINEIIKDDYIVLTQKPDYKNDPSYIDEQTRKRFIEENKLRFLRKYQLLAITAIQNAVRQGKDRFLFEMATGTGKTLVSAAIIKLFLRTGNARRVLFLVDRLELEDQAYKAFREYLKNDYTTVIYKENRGDWQKAEIVVSTIQTFLSKNRYKRAFSPDDFDLVISDEAHRSIGGNSRAVFEYFIGYKLGLTATPKNYLKNIDISKLGENDPRQLERRLLLDTYKTFGCENGEPTFRYSLIDGVRDGFLVNPIVVDARTEISTQLLSDKGYAVITQTEDGEKVEEFFIHKDFEKKFFSENTNRAFCEAFIKNALRDPISNEIGKTIVYCVSQNHAAKITQILNEFADQMFPGKYQSDFAVQVTSNVPAAQQYAINFSYNNLSGSGNFLPIYKTSKTRVCVTVGMMTTGYDCRDILNLCLMRPIFSATEFIQIKGRGTRKYDFANDITDLLKRNNVGEKQKENYKIFDFFANCEYFEEKFNYDEVLELPRISTRSTGGDDSRLPVDFFETTQPDSILSIEETVIGYEGMKIDRMYFQKFEKKVFEHPALKEYAENDRWNELMTYLEQNILNKPEEYFTLEKLRKSINIDRRITLREIIEKVFGMIPYFKTRDELLDEEFDKFDSRYLPKEEYFEYAKTVFKAYILDAEFRQIIDNGNFALLNVSPYGEAFKRLSPELRKAIPEYIKDFVSLNKFVA
>NC_018178.1|WP_014854803.1|159984_162594_-|N-6-DNA-methylase
MLDSETKRRIDTARDILVGKVPDPKSQVEQITIALIYKFMNDMDKESLEMGGKRTFFTGEYEKYSWDKIFDPRLGGHEMLSLYADAITRMSQNTNLPELFRNIFKNAYLPYRDPETLKLFLKTINEFTYDHSESLGDAFEYLLSVLGSQGDAGQFRTPRHIIDFMVEIVSPQKNELILDPACGTAGFLISAYKYIMRENTSEKYRSQNGNGRGDLLTTDEKKKLLTNFKGYDISPDMVRISLVNMYLHGFVNPQIYEYDTLTSEDRWNEYADVILANPPFMTPKGGIKPHKKFSVQSKRSEVLFVDYIAEHLTPTGRAAVIVPEGIIFQSANAYKQLRRMLVENYLYAVVSLPAGVFQPYSGVKTSILLMDKELARKTDSILFIKIENDGFDLGAQRRPIDRNDLPDALQVIREYLGKVRNGKVDEFNADEKPCSALLVKKEKLAENGEYYLTGDRYRVVEKRKHRKWPMVKLGEVCEIETGSRQKGGAVEKGIYSIGGEQISEDGSIRFDKMKYITEEYFKEMKKGILHYGDVLMVKDGATTGKIGYWKYSDKAAVNEHVYIFRANKDIKNQFLFRILQSNQFKSLLQPYIKGIIGGVSLEIKNIQIPLPPPEVQQEIVAEIEGYRKLIDGCRQVIDAWKPDVEGYLEEELKTYLAEHPGKQEELAEGHRPEPVEGWPMVKLGEVCEINPDSVYPYDIFGETEIVYIDITSVENGTGKVSFENKISAKNAPSRAKRVIKENDILLSTVRPNLKAFALLKGLPKNSIASTGFAVLRSKESIIPEYLYTCIFSEATMKQMTIKMGKGAYPSINTNDVENLTIPLPPLEVQQRIVEKIESERRVIDSLREMVKAYEEKIKRVIDKVWGGVV
>NC_018178.1|WP_157867460.1|159099_159912_-|hypothetical-protein
MSKRLYSYYEENNLRGYQGILIDETQTKGLFIDNVKKKLIDKPQRDEFINYLQVLQQDTGFQLSETLLADIQALQNSVIDVQDFRIGEALAEVVLEENFNCRFYWNELRDSRNPKGNKTGADLVGFIEIDNGEVLFLFGEVKTSSEKQSPPQVMTNPYGLENQLRDLYKDKNKRLILISYIKNKINLIKNDTFKNDFAAAIKNYYNQHNSTYMLYGILVRDTNPDKKDLKQSFDKLNKEILENTIGLKLLAIYLPLPKEKWLNIINGLEK
>NC_018178.1|WP_014854801.1|155929_159103_-|DEAD/DEAH-box-helicase
MKANEKYNILSKTFPELIQNINLIIQKAKIANRFETIRLNESEFQEISRAKELCELKIIELWDKQDTEDFKVLCSIYFDLATIKVEEIDSDEYIFELIKIITFGYLGEHSHFVKDFLNQQIEQIFDLDIPKRWNSRLLRKCFQVIVSLVIKKSWNDISKAVELINQLREEQKQYEGIFLNQIKEESQPYGAAEIVSLYHFAKTIEILGQYLLEGKIENSHYDIENKIKYHIRIAKEFANASGNMMLELLYQYLEAFGIKLIRNTIWYTLTGVNHWVSEFNKFISKQKQNPIFELLYPQKESILKGELLNPAYRTFVVSLPTSSGKTLIAEYKILQALNEFKKRGGWVAYIVPTKALVNQIYIRLNKDFNPIGLKIEKASGAIEIDGFESYLVENKGDYTDFDVLVTTYEKLNLLIRQGLGTTEKRPLVLVVVDEAHNIEEKQRGLNLELLLATIRNDCKEANFMLLTPDIPNAKQVAEWLGGERGKNIQIEFDWWQPNERVVGTLKTEGRGRNFDIYLQTLNTVKGSYNIGNKIPIIKIKSENIIKSKVTSSKLEFLKFFSSKILSYNSPIIILASGISETYTIADYLTENCNHNFNNDEDIDLLKKFVQSELGNDFPLVKYLDKRIAIHSSAIPDEIRYLIELLMTEGKLQALVATTTIAQGINFPVSAVVMGSYNYPFQGPMPTRDFWNLAGRVGRVGQKSMGWIGMVSKKTRDEKNIADYVKKASTDLLSQLESVVETAMNNQNEDFSKWLYLDERWSAVLQYISHLRTQIADLNEFINHLEEKLQATLGFKQISEEKKRFLISKLREYAQKISLEYARIADSTGFSTVSIRLIISRLAQSNISPNDWRKEQLFSEQNETMKKLVGIMMNTYEIRKSLEEIKIGDNILDQKSISRLILNWVNGKTIYDIAKSLFPNEDLTKAIEKTTKAIYKVIANIGSWGISAIQKIPTSGIDWNDLSEVEKKKMMNIPAYLFYGVNTDEGVLMRKANVPRSIANNIGLIYKNNMGEEIYNVKTATVSSWLKEQRLEIWEQAIPTNSPLTAEEYKRIWEKLNY
>NC_018178.1|WP_014854800.1|154339_155557_-|hypothetical-protein
MLQIESRLNELREWIETADADILTIYADVNPANPENAGRSWLKRIKNALQELPEIRDSQGKRDEPLYDLVMELLEQEKPEARTLALFAYRDKNKKLRAERLDLQIDLPIVNLANGRVDVRYGDPYLTPLLFAVDEYERTGILIMKPDGWKFYEVFLGEAREVEEIFGDTPGEDWNLIAKSNERISTEMNYRAANPGGRFDKLSPKDRASARTDAWLNKYYNKLARALSRTVDSLPIERLALVGEKWQTSHFETYLTRRLQNRIVARIPLWPDSGKLSPNTVWRRVELALIEAERKNEMELLDKLNGNEGLRGIDKVLDALQMGRVQVWILPWSLDINIWRCSEGGFIAASREIAETVCSQPEEVPLREYVLRLAAEYGSDLEFVRGKAEERLLKEMGGMAALPRW
>NC_018178.1|WP_014854799.1|149970_154107_-|response-regulator
MSDFRLKFIFIILLAINIPVNAQYRSLRFEHFTPNEGLSRASVTCIIQDNKGFIWAGTFNGLNRFDGYDFQVYHYVQNDSTSLSHNYISSITQDYKGDLWVGTSDGLNKYVGSRDNFVRFRRDGKNPFSVSDNQIETIFEDSQKRLWIGTRNGGLNLYDEKTNRFKHYYYKENNPGGISSNFVREIFEDNKGRLWIGHWNGSIDIKNANDSLFKPLYLNGKKLTNMPVTAISQSPDGTVWIGTQGDGLLRLTFNDDDSLSVKRYIHNPANGNSISGNVVFSLMIDRNGFVWIGTEDEGLSIYDPANDNFIVYKANPIEPFSLNNNSIYSIYEDRDGNVWLGTYAGGINLVVKGKAYFHHYKNIPGNKYSLGHNIVNCFWEDARGNIWIATGGSGIDIFDRKTNRFSHKKLRKNDGSIDVVLSFYEDSNGNLWIGTWGNGLFKYDTKSEQFTHYTKDNRGLASDNIFQMVEDDNKQLWLCTFWGGLTRLDIETGKVKIYNTDNSGISDNDLRAIIKDHTGKLWIGTDIGLELFDPKTETFKLFRHNNEDSKSITKGFVTFILEARDSSLWIGTTSGLNKYEPETGGFVHFTTQDGLPGDEVMAIVEDKNNNLWISTTKGITRFNPSDGTVKNYDVSDGLQNGEFTARSGYMTSKGEILFGGNNGFNLFEPDKLVDNKSVPPVYITDLKIFNKPVAVGKEDSPLKENLINTKELILSYKHSVISFGFVALNYNSPEKNQYAYMLEGFDKDWNYVGNVRTATYTNLDPGEYILKVKASNNDGVWNEAGAVLNIVIEPPFYKTWWAYLIEFLMLSIIAYFISNYYMSRKRLRNALKKEHIELEKMYELDHLKNQFFTNISHELQSPLTLVLSPLEKIISSEDVGDKIKNNLMVIYRNAKRLQRMANQLKDLNKLDTGDLKLYLSRGDIINFIRESTYSFHDIAIDHKIDFRFSSGVENYIAWFDADKIDKVIYNLLSNAFKFTPDGGVISVSVNIIGSGDFKGNGADENADNYIEIIVEDTGIGIPENKIEHIFERYYHIEDYKGKRYDGMGIGLALVYELIKLYRGCILVESKEGEGAKFTVQIPLDEHYLEENQLVAKFKLSSNNQFLPEPGNGKNNEASLVKYKLHNVPVLLIVEDDDEIREYIKNSFQYAYRVHEAEDGETGYKKALQIIPDIIISDVKMKKLDGITLCNKLKNDKKTSHIPVIILTSYNTQEYHIKSINQGADAYLPKPFNISVLEAYITNLLESRKKMQEKFSKEFIYGDSKIPLTDIDTRFLESLVKIIEDHISDEKFNADMLSKEIGMSRMQLYRKLRGLTDQTVHEFIRNIRLKKATQMLEQKKMTITEIAYAVGFNDLTYFARCFKKQYGKSPSEYMSNKNN
>NC_018178.1|WP_014854798.1|148352_149849_-|glycoside-hydrolase-family-30-protein
MKRTNLLFVLLIIIAAACARDGYEYSEAVVVQTSKSGDKLSEKGLFNLSSQGYNSDILIKLEPDTLYQKIVGFGGAFTESSAYVLNQISPEKRTEVLNAYFSKSGADYSLMRTHINSCDFSLKNYSYADVPGDTALKYFTVKEDLDDLVPLIKDARKISAEGFKLLASPWTAPPWMKDNNDWNGGSLKPEYYPVWAKFFVKYIEAYDSLGIDIWGVTVENEPLGNDENWESMIYTPEQMADFVKNHLGPTFQKEGIDANILIYDQNRDEVVEWAEKILGDPDAAKYVWGTAVHWYSSTISWYPEALNEVHKKFPDKHLMHTEGCIDSEVPVWKDDLWYWSKEATDWGYDWASPETKHLHPKYVPVFRYARDIIGGLNSWLTGWIDWNIVLDDKGGPNHAQNWCIAPVIVKPEEDEVYYTPLYYVMSHFSKYIRPGAHRIKLDINNSGIMATAAINEDISIAVELFNPTEKEFTYSVEIAGKYINYNLPGNSLQTIIIK
>NC_018178.1|WP_014854797.1|147469_148351_-|hypothetical-protein
MPVELKNNKLSLIIELPEEGYSGARFDYTGKIRRVIYNGIEFGTTESEKYDLKKGCGFFNEFGIDSPLGYDEIKPGEEFIKPGVGYLIKESDKPYDFFFEYKFRPFDFDYCIEQGKIIYRYLCNSSGYVFEAEKEIALTGNQFDIKYKIENKGDKVIRTNEYVHNFISVNSEKISGTYRLIFPFEIIKEEIHKVIDKENNLIFGGNFLSWKNEPQTEYFLENINCNCKAEWRIINRTYGCMISEMGNFAASKINLWGKRHVVSPELYKKIELNPGEKDEWIRTFTFDINIENV
>NC_018178.1|WP_014854796.1|145963_147334_-|MFS-transporter
MDNTGEKLSLKEKIGYGLGDTASNLYFQMFVNFLLFFYTDIFGIPAAAAGTMLMVSRFWDAANDPIMGIIADRTNTKWGKFRPYLIWMSGPLAIFGVLAFTTPPFDVTGKIIYAYITFTLVMMAYTAVNIPYSALMGVISPNSQERTSVSTFRFVLAFVGAFIVQGLTLPLVDFFGGGDQALGFPFTMGVYGILACILFYITFKTTRERVVVSSDQKTALKDDLRDLIRNRPWMYLLVMGIFTLGYIIIRSGTILYYFKYYIGSEALASLFMVLGTIGVIAGVASTQFFAKKFGKKRFYIFVMSLTTILTMIFYFLPSDQIFLIFALHILISFIMAPQAPLLWAMYADTADYSEWKNERRATGLVFSAATFAQKFGIAVGGGMAGWMLALFGFVPNTAQAPETLDGIKMMMSFIPAAGTLIATIAAFFYELDDNTMKKIENDLKLRKANGQQEGIK
>NC_018178.1|WP_014854795.1|144872_145967_-|family-16-glycosylhydrolase
MRTRILLLLLIALTLKVDLIFSQEYQLVWSDEFDGAELDTDKWEFQIGNGPPAGWGNNELEYYRKENATVSDGFLTITAKKENYQGFQYTSSRIRTINKGDWKYGKFEIRAKMPKGKGLWPAIWMLPTDNVYGGWAASGEIDIMEYLGHDTTTVYGTLHYGGSWPNNVHSGKSYTLKSGGFNEDFHTFTLVWEEGRMDWYVDGQLYQTQTHWYTSGQSFPAPFDQRFHLILNLAVGGNWPGNPDGSTKFPQEFVIDYVRVYQKVSTDIEEGNNSGKPSDFYLGQNYPNPFNSQTVIEYQLPKAANVKITLYNIYGQTADVIVDEYHNAGNYKYFYDASKLSSGVYTYSLNAGGRSQSRKLVLIK
>NC_018178.1|WP_014854805.1|167109_167415_+|M50-family-metallopeptidase
MKNFNKITELILITASLLTIVILWDTKIIYPVKLMFILFHEASHALATFLTGGKIVGIELNNNLSGGCVAEGGSNLLIALSGYPGSFLIAALLFFSAYNKN
>NC_018178.1|WP_041355659.1|167447_167855_+|M50-family-metallopeptidase
MVFIAANFIEDTVMSIIILIIAAAFFVIARFTPEALNRLFFRIIGLTGLIFVALDLFADSTGENLIRSDVALLSRQSGIPEFAWIALWLLIFLVLFWYMGKKNYFQQKLIYLSRTAPRNNRPTTKNIPILKMAYF
>NC_018178.1|WP_014854806.1|167776_169084_-|MFS-transporter
MNLLTIKNLRNNEKFRIFVWTLFDFANTSYSIVVVTFLYAVYFKHTVANGEPIGDFYWSIGTSISMLITALISPVLGAIADYSAGKKRFLLFFTALCILSTFMLYFVGSGDLVSGLLLFILANIGFEAGLVFYDAFLPEITKESSYGRVSGYGFAMGYLGSFTTLLVVYPFIEREMIKETFPLSALVFLIFAMPLFLFLKDSRKSRTADESYFAIGFGRVTATLKNLKNYRNLVLFLVSYFFFIEGVNTVIYFSGNYASTTLSFSMKELIVFFMIVQTTAIIGSVIFGIISDSIGQKKSLVISLSIWIATILLAYFTSSVDSPLIELTASIFNLSPESDGHLLLSRYFYLVGLLAGMVMGATQSISRSLMSKLTPYDKKTEFFGFYSFFGKSSAILGPLVFGITSYLTGNQKYAILSIGIFFVVGLLFLGAVRDK
>NC_018178.1|WP_014854807.1|169055_169562_-|transcription-antitermination-factor-NusB
MNKKSVRRILRERALQVLYAYELNGEGLEALINGLLSDLSVQTDIDFARELIEKTIINRKELDEKIKEKVANWEMDRIALIDRILLRIGICELLYFPDIPPKVTINEIIEIAKDFSTSNSNKFINGILDAILSDLKESGKLNKSGRGLIDQSLTKSSKKNESIDDQES
>NC_018178.1|WP_014854808.1|169639_170668_-|YdcF-family-protein
MKPAKKQISLPFLIAAVIALFVFISTLKYLNNGLNPVGYNPYFFGNLLNIIVTFLTIAGLIAAKRKSKNLSGILLYLLLILSVTPLILIFIDKYTGLLNLLDSYTSEEYFFTFQIKKIHVGLLFLISYFFQLYMMIYLWSRALSKERTVYLVSFFRTLLLLTLFFVISLFYVWFYPASPEEIKGKTYDYALVPGAAVWNKKSPSPIFEARLRKTLDLYRSGIVKKIILTGGKAPGELSEADAGYHFLLNLGVDTRSIIKEDKSGATREQIKYLYYIKNANSNSENLAIISDKFHLPRINQTCGFFGIKADLIPSGYKMIFSRAFYYRLREGIALILFWLFAI
>NC_018178.1|WP_014854809.1|170664_171462_-|ABC-transporter-ATP-binding-protein
MIIKINNLYFSYQSGKEYNQFKLSVDDWGINKGAFLSLLGPNGSGKSTLLKLILRFIKPDRGSIFINGVDIKNYKRKDLAKTVAYVPQKITSAFPYSVYETVMMGRTPYMNFMGFEDEDDRRIVKHALETFEIDHIKHKGINELSGGELQRVMIARAVAQDASIILLDEPNAHLDIEHQVSIYGILNELRRQKRITILTVTHDLNLAGIYSDDIAFMVNGRIVISGKKSEALNEKNIREIFKVNAEVIKYTDDILNVLVKPDKLN
>NC_018178.1|WP_014854810.1|171588_172248_-|energy-transducer-TonB
MALKKNPKADLKRQYQRVFEISIIISLAVIILAFKFFPQMKKEVVKLEAAQELVNVEDVVNTKQETAPPPPPKPPIPIEAPSEDVLEDIEIGETELDINEQVTAAPPPPPKEEAKEEEEAVFFVAVEEQPEPIGGIEAIQKKIVYPEIAKRAGVQGRVYIKAFVDENGNVVKAEVIKGIGAGCDEAAVKAVMETKFKPGRQRGKPVKVQVSIPVVFKLQ
>NC_018178.1|WP_041355661.1|172340_172733_-|VanZ-family-protein
MRTNPRRYVYIPLVIYWLLLFSLTTIPADKLPQIFVWQDKIQHFIAYLILSMMLELTLHFQRKIPKFSRMPLKITLWFIIIYASLDEIHQAFIPGRYCDIFDLIFDIAGGALGALIVYKFLKNVKRIETI
>NC_018178.1|WP_014854812.1|172722_174291_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MIPLFTSRQVRSADEFAIAKLGLPGLVLMENAARSIFEQIKLNLPLSENTTFGVVSGKGNNGGDGFALARHLLINGYKVIVIALADDKELKGDALVNFRALRNLIKYYPDSKLIKYKRLNDLSILKNADVIVDSILGTGSKGELREPYKSIVEKLNSIDAFKVAVDLPTGLDVDTGYGDVVFEADLTVTLSEYKTGLFYGKGYTHCGKVVKGSIGIGSEYYNRLETDTYLIEPEDAFVNIPLKEPDLHKYSAGKVLLIAGSRNLPGAAILAAETALRAGAGAVILAVPDSISETVRTKIGSAVVISYNDNGKGFLTEEATSQLEEKICWADTIAIGPGLGRDKDTINAVINILKKNNGKKFVIDADAIFALANSKQYLKNSILTPHLGEFANLIGIAVEDLKVNPIPHAKKFAAKNKCHLVLKGAPTLIFNPAGEVFVNTTGNQGMAKFGTGDVLTGVISSFLAQSGNNEASAISGVYLHSLAADLLAEEKTIYGFTANDLMEKIPYAIKFIIDTFLPDIED
>NC_018178.1|WP_041355663.1|174295_175726_-|NADH-quinone-oxidoreductase-subunit-NuoN
MPTSNQEYLMLIPFILMGVTILISVLIEIYFKRSEEILPWFSAIAFLAAGIISLWNINERALLFGGMIEAGGISAIFNFIFNVAAMLVVLASADYLKKYGTYYGEYYILIQSSVLGMMVMASTQDLLMIFMGLELMSICFYILAGINRKKLTANEASLKYFLLGAFASGFILYGLALVYGATQTTGIFTIVDNIVSMQGNIVFWTGVLLLVVGFSFKIAAVPFHMWVPDVYQGAATTVTGLMSTAGKTAAFGVLIILLALSSPVNGNNVLQPYFAVIATLSMVAGSVIALSQSNLKRLLAYSSIAHAGYMSIGLAANNVESISGIIFYLAAYTFMNIGAFAIISVIEGESDANLDIDSYAGLNSRSPFLAAVMSLFMFALAGIPPLAGFFGKYYVFLGAIEGGLTWLAIVGVLSSVISVYFYLKVVVYIYFKEPQKDLTINVSPYSLSAIIISALFVLIFGLFPDLLLRVISIAVG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018178_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018178_2

929685-930781

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
ATTTCAATTCTACAATAGTACGATTAAGAC	CRISPRCasFinder
ATTTCAATTCTACAATAGTACGATTAAGAC	CRT
ATTTCAATTCTACAATAGTACGATTAAGAC	PILER-CR

16 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas6

The CRISPR arrays of NC_018178_2

>merge|NC_018178|2|929685-930781|CRISPRCasFinder,CRT,PILER-CR
GGGGCAATTCTACAATAGTACGATTAAGACTGTAAAGGATCGCAACGGCAAGGTAATTAGAAAAGCATTTCAATTCTACAATAGTACGATTAAGACATTGAAGATGATTCTTGCAGTCATACGGCACACATAATTTCAATTCTACAATAGTACGATTAAGACCCTACCCTGAAGACGTTCTTATTGAATACATAGAGATTTCAATTCTACAATAGTACGATTAAGACTCGCTTTTTATCCGCTCCCTCCACATCCCTTGCAAATATTTCAATTCTACAATAGTACGATTAAGACTGCTCGACCCTAACGCCGCCGATTATCAAATATATCATTTCAATTCTACAATAGTACGATTAAGACACGAATTAACAACGGTATTTTGGGTGCCATTAGAGGCAATTTCAATTCTACAATAGTACGATTAAGACGACCACTTACGGATATTGCACTATACTCGAAGATTAATTTCAATTCTACAATAGTACGATTAAGACGGCAATCGCCGGTTGTGGTATGGAGATATAGAAGTTAATTTCAATTCTACAATAGTACGATTAAGACTTCTTCTTTAACGGCCAGGAATCTGCAACTGAATTCGCATTTCAATTCTACAATAGTACGATTAAGACTCGTAACTTCTCTCTGCTTCTTCTACTTCGTCTCTCAATTTCAATTCTACAATAGTACGATTAAGACATTATTAACGAAACTACAAAAGAAAAACTATTAAAATATTTCAATTCTACAATAGTACGATTAAGACACGCCGCCGCCTTTTTTCTGAATCGAGTCGAGTATGATTTCAATTCTACAATAGTACGATTAAGACTTTTTAATGAAGATTGTTAATTCATTTATTAATTCCTATTTCAATTCTACAATAGTACGATTAAGACTCAAAAATTTTGCTCCGCTGGTTCCCGGAAATTATTATTTCAATTCTACAATAGTACGATTAAGACGCTCGCATGGGACAATATGTACATGAGCCAGGCTACTCATTTCAATTCTACAATAGTACGATTAAGACTTTCTTCAACTAAAAATAAATCATTTTCAATACTATAATTTCAATTCTACAATAGTACGATTAAGAC

>NC_018178|2|2|929685-930781|CRISPRCasFinder
GGGGCAATTCTACAATAGTACGATTAAGAC	TGTAAAGGATCGCAACGGCAAGGTAATTAGAAAAGC
ATTTCAATTCTACAATAGTACGATTAAGAC	ATTGAAGATGATTCTTGCAGTCATACGGCACACATA
ATTTCAATTCTACAATAGTACGATTAAGAC	CCTACCCTGAAGACGTTCTTATTGAATACATAGAG
ATTTCAATTCTACAATAGTACGATTAAGAC	TCGCTTTTTATCCGCTCCCTCCACATCCCTTGCAAAT
ATTTCAATTCTACAATAGTACGATTAAGAC	TGCTCGACCCTAACGCCGCCGATTATCAAATATATC
ATTTCAATTCTACAATAGTACGATTAAGAC	ACGAATTAACAACGGTATTTTGGGTGCCATTAGAGGCA
ATTTCAATTCTACAATAGTACGATTAAGAC	GACCACTTACGGATATTGCACTATACTCGAAGATTA
ATTTCAATTCTACAATAGTACGATTAAGAC	GGCAATCGCCGGTTGTGGTATGGAGATATAGAAGTTA
ATTTCAATTCTACAATAGTACGATTAAGAC	TTCTTCTTTAACGGCCAGGAATCTGCAACTGAATTCGC
ATTTCAATTCTACAATAGTACGATTAAGAC	TCGTAACTTCTCTCTGCTTCTTCTACTTCGTCTCTCA
ATTTCAATTCTACAATAGTACGATTAAGAC	ATTATTAACGAAACTACAAAAGAAAAACTATTAAAAT
ATTTCAATTCTACAATAGTACGATTAAGAC	ACGCCGCCGCCTTTTTTCTGAATCGAGTCGAGTATG
ATTTCAATTCTACAATAGTACGATTAAGAC	TTTTTAATGAAGATTGTTAATTCATTTATTAATTCCT
ATTTCAATTCTACAATAGTACGATTAAGAC	TCAAAAATTTTGCTCCGCTGGTTCCCGGAAATTATT
ATTTCAATTCTACAATAGTACGATTAAGAC	GCTCGCATGGGACAATATGTACATGAGCCAGGCTACTC
ATTTCAATTCTACAATAGTACGATTAAGAC	TTTCTTCAACTAAAAATAAATCATTTTCAATACTATA
ATTTCAATTCTACAATAGTACGATTAAGAC

>NC_018178|2|1|929685-930781|CRT
GGGGCAATTCTACAATAGTACGATTAAGAC	TGTAAAGGATCGCAACGGCAAGGTAATTAGAAAAGC
ATTTCAATTCTACAATAGTACGATTAAGAC	ATTGAAGATGATTCTTGCAGTCATACGGCACACATA
ATTTCAATTCTACAATAGTACGATTAAGAC	CCTACCCTGAAGACGTTCTTATTGAATACATAGAG
ATTTCAATTCTACAATAGTACGATTAAGAC	TCGCTTTTTATCCGCTCCCTCCACATCCCTTGCAAAT
ATTTCAATTCTACAATAGTACGATTAAGAC	TGCTCGACCCTAACGCCGCCGATTATCAAATATATC
ATTTCAATTCTACAATAGTACGATTAAGAC	ACGAATTAACAACGGTATTTTGGGTGCCATTAGAGGCA
ATTTCAATTCTACAATAGTACGATTAAGAC	GACCACTTACGGATATTGCACTATACTCGAAGATTA
ATTTCAATTCTACAATAGTACGATTAAGAC	GGCAATCGCCGGTTGTGGTATGGAGATATAGAAGTTA
ATTTCAATTCTACAATAGTACGATTAAGAC	TTCTTCTTTAACGGCCAGGAATCTGCAACTGAATTCGC
ATTTCAATTCTACAATAGTACGATTAAGAC	TCGTAACTTCTCTCTGCTTCTTCTACTTCGTCTCTCA
ATTTCAATTCTACAATAGTACGATTAAGAC	ATTATTAACGAAACTACAAAAGAAAAACTATTAAAAT
ATTTCAATTCTACAATAGTACGATTAAGAC	ACGCCGCCGCCTTTTTTCTGAATCGAGTCGAGTATG
ATTTCAATTCTACAATAGTACGATTAAGAC	TTTTTAATGAAGATTGTTAATTCATTTATTAATTCCT
ATTTCAATTCTACAATAGTACGATTAAGAC	TCAAAAATTTTGCTCCGCTGGTTCCCGGAAATTATT
ATTTCAATTCTACAATAGTACGATTAAGAC	GCTCGCATGGGACAATATGTACATGAGCCAGGCTACTC
ATTTCAATTCTACAATAGTACGATTAAGAC	TTTCTTCAACTAAAAATAAATCATTTTCAATACTATA
ATTTCAATTCTACAATAGTACGATTAAGAC

>NC_018178|2|1|929751-930781|PILER-CR
ATTTCAATTCTACAATAGTACGATTAAGAC	ATTGAAGATGATTCTTGCAGTCATACGGCACACATA
ATTTCAATTCTACAATAGTACGATTAAGAC	CCTACCCTGAAGACGTTCTTATTGAATACATAGAG
ATTTCAATTCTACAATAGTACGATTAAGAC	TCGCTTTTTATCCGCTCCCTCCACATCCCTTGCAAAT
ATTTCAATTCTACAATAGTACGATTAAGAC	TGCTCGACCCTAACGCCGCCGATTATCAAATATATC
ATTTCAATTCTACAATAGTACGATTAAGAC	ACGAATTAACAACGGTATTTTGGGTGCCATTAGAGGCA
ATTTCAATTCTACAATAGTACGATTAAGAC	GACCACTTACGGATATTGCACTATACTCGAAGATTA
ATTTCAATTCTACAATAGTACGATTAAGAC	GGCAATCGCCGGTTGTGGTATGGAGATATAGAAGTTA
ATTTCAATTCTACAATAGTACGATTAAGAC	TTCTTCTTTAACGGCCAGGAATCTGCAACTGAATTCGC
ATTTCAATTCTACAATAGTACGATTAAGAC	TCGTAACTTCTCTCTGCTTCTTCTACTTCGTCTCTCA
ATTTCAATTCTACAATAGTACGATTAAGAC	ATTATTAACGAAACTACAAAAGAAAAACTATTAAAAT
ATTTCAATTCTACAATAGTACGATTAAGAC	ACGCCGCCGCCTTTTTTCTGAATCGAGTCGAGTATG
ATTTCAATTCTACAATAGTACGATTAAGAC	TTTTTAATGAAGATTGTTAATTCATTTATTAATTCCT
ATTTCAATTCTACAATAGTACGATTAAGAC	TCAAAAATTTTGCTCCGCTGGTTCCCGGAAATTATT
ATTTCAATTCTACAATAGTACGATTAAGAC	GCTCGCATGGGACAATATGTACATGAGCCAGGCTACTC
ATTTCAATTCTACAATAGTACGATTAAGAC	TTTCTTCAACTAAAAATAAATCATTTTCAATACTATA
ATTTCAATTCTACAATAGTACGATTAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018178.1\|WP_014855489.1\|933465_936093_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|187770
NC_018178.1\|WP_014855479.1\|924735_924999_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014855477.1\|923825_924092_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014855493.1\|938815_939976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|162595
NC_018178.1\|WP_041355829.1\|932898_933393_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_018178.1\|WP_014855485.1\|930930_931194_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_018178.1\|WP_014855492.1\|938333_938813_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014855476.1\|923587_923821_-\|YHS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225886
NC_018178.1\|WP_014855483.1\|926932_927172_-\|septation-protein-SpoVG-family-protein	unknown	unknown	gnl\|CDD\|377202
NC_018178.1\|WP_014855486.1\|931195_932284_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_018178.1\|WP_014855494.1\|939972_940680_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NC_018178.1\|WP_014855480.1\|925440_925932_+\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014855481.1\|925972_926224_-\|thiamine-binding-protein	unknown	unknown	gnl\|CDD\|376658
NC_018178.1\|WP_014855491.1\|936887_938318_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	pfam01905_cas7_CAS-I	gnl\|CDD\|376656
NC_018178.1\|WP_014855487.1\|932421_932787_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NC_018178.1\|WP_014855478.1\|924101_924671_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014855490.1\|936079_936907_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_018178.1\|WP_014855482.1\|926208_926877_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NC_018178.1\|WP_014855475.1\|923314_923521_-\|YHS-domain-containing-protein	unknown	unknown	gnl\|CDD\|309878
NC_018178.1\|WP_081489450.1\|928224_928593_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379049

Protein	Function_ID	Function_description	E-value
NC_018178.1\|WP_014855489.1\|933465_936093_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	2.71365e-59
NC_018178.1\|WP_014855494.1\|939972_940680_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.9856e-18
NC_018178.1\|WP_041355829.1\|932898_933393_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.02011e-60
NC_018178.1\|WP_014855476.1\|923587_923821_-\|YHS-domain-containing-protein	gnl\|CDD\|225886	COG3350, COG3350, Uncharacterized conserved protein [Function unknown].	2.08901e-12
NC_018178.1\|WP_014855483.1\|926932_927172_-\|septation-protein-SpoVG-family-protein	gnl\|CDD\|377202	pfam04026, SpoVG, SpoVG. Stage V sporulation protein G. Essential for sporulation and specific to stage V sporulation in Bacillus megaterium and subtilis. In B. subtilis, expression decreases after 30-60 minutes of cold shock.	6.18681e-12
NC_018178.1\|WP_014855486.1\|931195_932284_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.50782e-171
NC_018178.1\|WP_014855493.1\|938815_939976_-\|hypothetical-protein	gnl\|CDD\|162595	TIGR01908, Uncharacterized_protein_aq_372, CRISPR-associated protein Cas8b1/Cst1, subtype I-B/TNEAP. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This (revised) model describes a conserved region from an otherwise highly divergent protein found in the Tneap subtype of CRISPR/Cas regions. This Cys-rich region features two motifs of CXXC.	0.00415844
NC_018178.1\|WP_014855485.1\|930930_931194_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.21025e-28
NC_018178.1\|WP_014855491.1\|936887_938318_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	1.65378e-32
NC_018178.1\|WP_014855487.1\|932421_932787_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	8.43825e-42
NC_018178.1\|WP_014855481.1\|925972_926224_-\|thiamine-binding-protein	gnl\|CDD\|376658	pfam01910, Thiamine_BP, Thiamine-binding protein. The crystal structure of two of these members shows that this domain has a ferredoxin like fold and is likely to exists as at least homodimers. Sulphate ions are are located at the dimer interfaces, which are thought to confer additional stability. Although the function of this domain remains to be identified, its structure suggests a role in protein-protein interactions possibly regulated by the binding of small-molecule ligands. Solution of the structure of the hyperthermophilic anaerobic Thermotoga maritima sequence, UniProtKB:Q9WYV6, shows that this has a beta-alpha-beta-beta-alpha-beta ferredoxin-like fold and assembles as a homotetramer. It was possible to identify a pocket in each monmer that bound an unidentified ligand. It was also found that it bound charged thiamine though not hydroxymethyl pyrimidine. It is proposed that it is transporting charged thiamine around the cytoplasm. Under oxidative conditions this bacterium is under stress, and the transcriiptional unit within which this protein is expressed is up-regulated in these conditions, suggesting that the chelation of cytoplasmic thaimine is part of the response mechanism to such oxidatvie stress, which is mediated by this family.	8.23789e-06
NC_018178.1\|WP_014855490.1\|936079_936907_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.52965e-24
NC_018178.1\|WP_014855482.1\|926208_926877_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	1.26079e-33
NC_018178.1\|WP_014855475.1\|923314_923521_-\|YHS-domain-containing-protein	gnl\|CDD\|309878	pfam04945, YHS, YHS domain. This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterized membrane proteins. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.	4.27815e-13
NC_018178.1\|WP_081489450.1\|928224_928593_+\|AAA-family-ATPase	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	4.4425e-15

>NC_018178.1|WP_081489450.1|928224_928593_+|AAA-family-ATPase
MYIDLECIDNRELFSEKNYDNIILSLASPGLDFKENALIGIDEIQLLPGIVSAIKYLYDNYRIKFIITGSNNYYINNLFGESLAGRKKVFELSTLRQAQRSCKCCKKSFVFSTLILSRNITL
>NC_018178.1|WP_014855483.1|926932_927172_-|septation-protein-SpoVG-family-protein
MKILRMSKVQSGGKTVAFFDIQTDDGIVIKGFRLVNGANGLFLSAPNEKGKDGKFYETVILPKEMKKELEKKAVDEYNR
>NC_018178.1|WP_014855482.1|926208_926877_-|methyltransferase-domain-containing-protein
MAVFDSEADKYDQWYETPLGNFVNLLEKQAIYSLLNPSPGETVLDVGCGTGNYSIELAGRDCIVTGVDNSKNMIEIAKWKAASRNLKINFVFADVSLLPFDDNIFDSAICVAAVEFFGNRQKGIDEIFRVVKPGGKIVIGFINKNSGWGELYQSDYFKENTVFKYAGLLDIDEIRSIHPGELIEIKKTLFTPPDESEPSVEKEKIYAKSNKPGFIAALWQKK
>NC_018178.1|WP_014855481.1|925972_926224_-|thiamine-binding-protein
MAKKIMTCEFAFVPVQSHDYIAEVETVLDIIRECGLEYNIGEMSTIIKGESDKIFALMERIYNDRYDKSKFIISVRMSNVCGC
>NC_018178.1|WP_014855480.1|925440_925932_+|hypothetical-protein
MKIFKLTLIVLLTVFITGIQAQDKKDDHEAKCKMMVEKIQKTDANKDGKVFACPKCEVYQDEAGKCSKCGAELHEMTVDEVHKAICGKEKDHNHKMEMKSAKDYDKNKDGKVFQCSMCPNEISDEAGECPACGMKLKEVSVDDACKNLTKAKEKMEMKKKEMK
>NC_018178.1|WP_014855479.1|924735_924999_-|hypothetical-protein
MKLRFFKAAAFLAAALILTGINADIYGKNFNAMKYRSTKAEIYSAKKPSRFLKSKRHGFDVYNAKVIAVKRTLQKRTSAFRSSKVHM
>NC_018178.1|WP_014855478.1|924101_924671_-|hypothetical-protein
MKRLEPYPVAVSLFFIFTIFYGICISIGLILADSGSNSIWQMHKIWLLFLPGFNGLDSLSILIGLLEVSVGSYAFGYITVPIYNYLLRDKFKKNSYQSKLIYLRFKSLFLSFAVFLILVFTLCVVYDILMPPQYSMIKIWEILLPGFKSLNFYSYLLGIVEIIIYSAYTALIISGTLNYFEKSKNAEIS
>NC_018178.1|WP_014855477.1|923825_924092_-|hypothetical-protein
MKKYSSVYFGIITGVAGAALFLLAIIKTLVSDIDALPYIRTMMPFVDSITIYTVLGGLAAAFIWGWVLGFFFMLIYNWIDNYFFEKGE
>NC_018178.1|WP_014855476.1|923587_923821_-|YHS-domain-containing-protein
MEIDPVCGMELNNIESAPRIAYNGRMYYFCCPKCKSLFVKAPESYVDFFDSSIELNGIKPDKCDCDKSMLYIKGYRF
>NC_018178.1|WP_014855475.1|923314_923521_-|YHS-domain-containing-protein
MDGKANKNNSGKFIADPVCGIVIHNILLAQESVYKGKTYFFCSETCKAKFDLSPEKYIKIKNKEKRQQ
>NC_018178.1|WP_014855485.1|930930_931194_-|CRISPR-associated-endonuclease-Cas2
MYVIVVYDAAPKRGVKLMKFLRQHLNWVQNSVFEGELTESGFENLKHGIKDIINDKKDSVIYYRFDSQNYHDRGIIGVEKNEIDSFI
>NC_018178.1|WP_014855486.1|931195_932284_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRNYYIFSSGKLIRKDNTLYFEPGESSEPEEVNDTEEIEVDDESVTENDAEEREPARLPRKPIPVEDIDSIYCYGELKFNTKFLNFLARKEIILHLFNYYGYYTSSFYPREPYLSGRLLVEQVKRHLDKEARLEIAKKFIIGAAENIKKNLQYYNGRDKDLSYFIDKAEEAIRKIPDCRDVQELMGVEGNLRSDYYMAWNLIVNPEINFEKREKRPPSNPINALISFGNSLVYTVVLSEIYRTQLNPLISYLHEPGERRFSLALDIAEVFKPLLADRIIFSLLNKNQIQEKHFSKELNKCYLTEDGRKIFLKEFDEKLKTTIKHRQLKRNVSYRHLIRLECYKLIKHIIGEKEYKPFTIWW
>NC_018178.1|WP_014855487.1|932421_932787_-|four-helix-bundle-protein
MIRKFEDLKVWQDARMFVNVVYNLTNSDVFRKDYGLKDQIQRASVSIMNNIAEGFERDNNKEFVKFLLYAKGSAGEVRSLLYIAYDLHYIAKEEFETALEQSLNIIKQISKFISYLKTKTN
>NC_018178.1|WP_041355829.1|932898_933393_-|CRISPR-associated-protein-Cas4
MTGTQIAYYLICQRKLWLFLRNIEMEHDSDTVSIGKLISDTTYKRESHEIHITDDEDDIALDFYDSKTKTIHEVKKSDKMEETHVWQVKFYIYVLEKMGIDNVRGEINYPKLKQKAEVTLTESDRKKLKEIREEVKKIAELNVPPEVINKPFCKQCAYYELCYV
>NC_018178.1|WP_014855489.1|933465_936093_-|CRISPR-associated-helicase/endonuclease-Cas3
MTETNYKIWAKSPSGDNEKGISLYQHIKDVLDNLDKIKPYINDDKIYELVKLSVLLHDLGKALPYFQIRSVGNKGYEPFEVSANIPHSIFSLFLINKKKLKDLVEELVRQKADEYTQFVLSAVAYHHWRNNFEEVVRYSNRDLDKLLNSDRLQEIEKNLKEDLQDLFNGRIDLIEFNKIMAKEILNGAQIQNYAIPPYNLYWLPMRVSYEEVNLIHWVKIAGFLMRCDHFASFCESENNYDYQIEIPGLEYSLIIERIIAGIQEKLGKGAVINLWQAGLVEKDNLGDKNVILIAPTGSGKTEFAYIWSKGEKTFYTLPLRSAVNQIYDRSIKLFGEDKTGLLHSDADVYLLGDGNESENIDSYSLSRQLSYPFMVSTGDQFFPYALRPPSYERIYATFSYSRLVIDEVQAYDPKAAAIVVKYLEHIYKMGGKFLLVTATMPSFIKEELKSRIKKDNEGSPDFELVDYYKQNDIYAQLKKHKLTFIKEENKEKEYRFSDKLIKDIIAKAKENDGHRVLVVVNTVKLAIDTFNKIKKIIERENDIYIELLHSRLTYEKRREKEKRIEEEFSNPKPENEHKPKIVVATQVVEASLDLDADILFTELAPMDSLVQRMGRVLRRYKNDSPTSLDKPNVFITVFENGVESGGYRVYSDDLIGITMKLLSSDTNELANWCDDKYKKKDWRSAKTIDLFFKTIKKMQANDLLLSEAKKRELVEKLYNKDLFAVSGSYISDFYKTLDILDAGFMAERKEEAHRIFREISSITVIPKILLDDIKNELYDFFSKNDGKKNLYINFKKEILNKYVLNVPFNKWKYDTIRFREDIRLSYWLEFSENNFTGYQLNVLKKWCKNIFIVETEYDDEKGVNSYEFTEYSSFI
>NC_018178.1|WP_014855490.1|936079_936907_-|type-I-B-CRISPR-associated-protein-Cas5
MHLLRIKIYQPNAHYRLPFAYQRRHTYPLPPYSTVIGFLINAMGIWDQRDSFYKEGIRELKISLAGKFDSKITEYIWFRNMSKKAHFGRFSYLENRENNGTVEHPGGQSPMRIDVLNDVHLLIYLGHEDIDVLKRIREEISNPINRLEILHLGRAEDWIVLEEEPKLIDDSQIAYERYGGNFKYFFWIPRKFYIRENESWCLISDDEFANYDGLMYNLPTFSTIEGYEKNYNRHGKRTFEYVRTKLNDGLIIGQRLMIDKELNLPFFLGDLNDRN
>NC_018178.1|WP_014855491.1|936887_938318_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNITLTMIFEGSALNRDEKVGGNILSIKKMNVNGEIKSYIGKPAIRHYLFETLQKAFSDNWDGAKLTGQGQVVQFDIAEDDILSKSELDAFGYMYTISGDNSITRKSPVGITKAISTYPYEQDLAFYANHDLVGRAIKQGNSVKPNPYNKEEHTSLYKFSVTLDAKKIGEDIWIMKNKPTESQNFLNIEIASPKSIILENVESKEDENGDIFYEIQVQKQNRKIIINGNEIIVDYDLMKKSKIKKSEDMKLNFIPAIVKVSQKEDKEKLKKEQQKASNGFEITDYEENEDEKTYAFSVSRKPIYSSSDKTLTLELGAVKSFEIKNKNGNEYEIERGIIKIESISSNGPFKITFSLKDDEKQKRIKNILEVLKNGLYAQSSGEANTIVPLFIIAGGVKIPSPIFHSYIDVKKEEGKFKIIGIKDCLSNGWIDGQVYIKDCERIPVDIQDGKVTKDWDTFINSLNNKEEDKNASTTN
>NC_018178.1|WP_014855492.1|938333_938813_-|hypothetical-protein
MEEKLKILNNQLKDCKPVLKDFEDYYNLLNQKFDEFQKLVEYASELKKDEKEFENLYKRVAGKNASDLVDKLSRRGHALKKELGDAFENMGYRLLEQTRAGKRDDVYYGILRIFVANKKKFPDELVEAFKPIYTDEIFKVFIFSFLSGIIGKENRIENN
>NC_018178.1|WP_014855493.1|938815_939976_-|hypothetical-protein
MSEEKKMITLYPSNWLYNAGVVGIIRVFKALDYDIYNAMKDDGTFLLDLNYISNGKKLEINGYKISEFGLRWLLESWEEVAPRDENEDKNKIKRAWGILFNVYYRGFFNANTNLFYSSSKKSKALIEQFEEFISSFSTSQPAVTKCTFCLREANATLKNTFTSEHSKLLGAASGDKGVPNSFWNMNKENSIAVCDYCSFILLSNHLSRIRLNDNTEIFINAPSFKIMYELNKLAKEVYGNKDNYERKTKREILAMSLVEYSNKINTSLGVWTEMNIEIVTKRNDFIEFFTLPYNVIKIITDRSISSILADLGEHRIYSRIIDEKYYDLIDLAQRLLKLSTKESLSANDISIINALLYQRKNKSNLVSTANKILKLYSLIEDKLKGN
>NC_018178.1|WP_014855494.1|939972_940680_-|CRISPR-associated-endoribonuclease-Cas6
MRITLDYEISPDIIPKNYGRGFISLIKKLIEKTDPLLFNCYYEQHKLKPFTFGTYFPKLQGNEGDKLNVGNIVKVNFSTSSIQLATNIYNGFLKVKEHTWQNSGSSINFKPLRAYLQPNKYSYKEEIIVKTLSPLLVNNIGDSNKFLLPGEEGFLEGLEFSVRECAKEFLGDESNFPFKIEVKAWKRRVLYHYKKMPSTIGIFEIKSKPEIIQMIYDVGLGVHRSQGFGMMEVVG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018178_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018178_3

1354991-1356548

orTypeII

Consensus_repeat	Method
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	CRISPRCasFinder
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	PILER-CR

20 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_018178_3

>merge|NC_018178|3|1354991-1356548|CRISPRCasFinder,PILER-CR
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGGAATTATTGCGTTTTATGTTATTACGCCAGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGGATATTGACGTTAGCGACACTGAGGAAAAGGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGATAAGCTGATTGCTAAAAATGTTCTGATTGTTGTGATTTGCTTTCAATTTTTTCTTTGACATATTAAAACCAAGTATCTCTATCATGAGTTGCGCAAAAGAGGAGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGAAACGGTAATATAAAATAAAGGGGAGCTAGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGGAGTACACAGGATAGGGCAGAAGAACAGCGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGAGGTAGGCAGGGACAAACTCAGCGAAGGTGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGGTAAGCAATTTTAACTCCTCCGTCGATTCTGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGCAGGATGTCGAGCTTCATCGCCTTTGCAACGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGTCCATTGCCGCACAACAACGGTGATGGCATGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGAGAATTGGGCAGACGAGGTCTATAAATGGTGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGATAGAGACAGCGGAAACGACGGAAACGCCGGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGGACTCCCGCAGAGGCAAAGCGGAGCGCATCGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGGAGAGAAGGGGTGGGCGACTGTCAAGGCAGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGCCCGCCCCAAACAGACCCCAACGGGACTTCGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGTAATTTCTTTTTCTACTGAATCTCCTATTAGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGTTAGCGAAATAAATGGCAGATTATCCTGATGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGTATTCGACGCTGTTAATGATGGCTTGGTAGGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGAGCTCTTCAATAGGATTTGCAAACGGTTTGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGTTTACCCCCATAAATGGAATGCAAACGTTAGTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG

>NC_018178|3|3|1354991-1356548|CRISPRCasFinder
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	GAATTATTGCGTTTTATGTTATTACGCCA
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	GATATTGACGTTAGCGACACTGAGGAAAAG
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	ATAAGCTGATTGCTAAAAATGTTCTGAT
TGTTGTGATTTGCTTTCAATTTTTTCTTTGACATATTAAAACCAAG	TATCTCTATCATGAGTTGCGCAAAAGAGGA
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	AAACGGTAATATAAAATAAAGGGGAGCTA
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	GAGTACACAGGATAGGGCAGAAGAACAGC
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	AGGTAGGCAGGGACAAACTCAGCGAAGGT
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	GTAAGCAATTTTAACTCCTCCGTCGATTCT
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	CAGGATGTCGAGCTTCATCGCCTTTGCAAC
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	TCCATTGCCGCACAACAACGGTGATGGCAT
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	AGAATTGGGCAGACGAGGTCTATAAATGGT
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	ATAGAGACAGCGGAAACGACGGAAACGCCG
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	GACTCCCGCAGAGGCAAAGCGGAGCGCATC
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	GAGAGAAGGGGTGGGCGACTGTCAAGGCA
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	CCCGCCCCAAACAGACCCCAACGGGACTTC
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	TAATTTCTTTTTCTACTGAATCTCCTATTA
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	TTAGCGAAATAAATGGCAGATTATCCTGAT
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	TATTCGACGCTGTTAATGATGGCTTGGTAG
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	AGCTCTTCAATAGGATTTGCAAACGGTTT
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	TTTACCCCCATAAATGGAATGCAAACGTTA
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG

>NC_018178|3|2|1355142-1356548|PILER-CR
GTTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG	ATAAGCTGATTGCTAAAAATGTTCTGATT
GTTGTGATTTGCTTTCAATTTTTTCTTTGACATATTAAAACCAAGT	ATCTCTATCATGAGTTGCGCAAAAGAGGAG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGA	AACGGTAATATAAAATAAAGGGGAGCTAG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGG	AGTACACAGGATAGGGCAGAAGAACAGCG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGA	GGTAGGCAGGGACAAACTCAGCGAAGGTG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGG	TAAGCAATTTTAACTCCTCCGTCGATTCTG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGC	AGGATGTCGAGCTTCATCGCCTTTGCAACG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGT	CCATTGCCGCACAACAACGGTGATGGCATG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGA	GAATTGGGCAGACGAGGTCTATAAATGGTG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGA	TAGAGACAGCGGAAACGACGGAAACGCCGG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGG	ACTCCCGCAGAGGCAAAGCGGAGCGCATCG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGG	AGAGAAGGGGTGGGCGACTGTCAAGGCAG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGC	CCGCCCCAAACAGACCCCAACGGGACTTCG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGT	AATTTCTTTTTCTACTGAATCTCCTATTAG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGT	TAGCGAAATAAATGGCAGATTATCCTGATG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGT	ATTCGACGCTGTTAATGATGGCTTGGTAGG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGA	GCTCTTCAATAGGATTTGCAAACGGTTTG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAGT	TTACCCCCATAAATGGAATGCAAACGTTAG
TTGTGATTTGCTTTCAAATTTTTTCTTTGACATATTAAAACCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018178.1\|WP_014855838.1\|1348385_1348631_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|378250
NC_018178.1\|WP_014855850.1\|1366578_1368270_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_018178.1\|WP_014855847.1\|1363697_1364042_+\|DUF971-domain-containing-protein	unknown	unknown	gnl\|CDD\|377616
NC_018178.1\|WP_041355932.1\|1361184_1363059_-\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	unknown
NC_018178.1\|WP_157867530.1\|1352346_1353387_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_018178.1\|WP_041355920.1\|1346745_1347039_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_018178.1\|WP_014855846.1\|1357087_1358077_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_018178.1\|WP_014855839.1\|1348643_1349303_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_018178.1\|WP_041356343.1\|1350916_1351381_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NC_018178.1\|WP_014855833.1\|1344188_1345652_+\|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase	unknown	unknown	gnl\|CDD\|226488
NC_018178.1\|WP_014855840.1\|1349345_1350836_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_018178.1\|WP_014855836.1\|1347035_1347557_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NC_018178.1\|WP_041355930.1\|1360868_1361174_-\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014855842.1\|1351446_1352196_-\|cytidylate-kinase-like-family-protein	unknown	unknown	gnl\|CDD\|379060
NC_018178.1\|WP_041355928.1\|1358085_1360860_-\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375967
NC_018178.1\|WP_014855845.1\|1356665_1356995_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_018178.1\|WP_014855849.1\|1365479_1366319_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423
NC_018178.1\|WP_014855851.1\|1368330_1369008_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381181
NC_018178.1\|WP_014855848.1\|1364035_1365478_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|215475
NC_018178.1\|WP_051015859.1\|1345641_1346691_+\|pseudaminic-acid-synthase	unknown	unknown	gnl\|CDD\|163337

Protein	Function_ID	Function_description	E-value
NC_018178.1\|WP_014855838.1\|1348385_1348631_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|378250	pfam09723, Zn-ribbon_8, Zinc ribbon domain. This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.	6.37907e-11
NC_018178.1\|WP_014855850.1\|1366578_1368270_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_018178.1\|WP_014855847.1\|1363697_1364042_+\|DUF971-domain-containing-protein	gnl\|CDD\|377616	pfam06155, DUF971, Protein of unknown function (DUF971). This family consists of several short bacterial proteins and one sequence from Oryza sativa. The function of this family is unknown.	2.88195e-28
NC_018178.1\|WP_014855851.1\|1368330_1369008_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381181	cd19918, RsmI_like, uncharacterized subfamily of the tetrapyrrole methylase family similar to Ribosomal RNA small subunit methyltransferase I (RsmI). RsmI, also known as rRNA (cytidine-2'-O-)-methyltransferase, is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	1.17708e-130
NC_018178.1\|WP_157867530.1\|1352346_1353387_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.58382e-42
NC_018178.1\|WP_041355920.1\|1346745_1347039_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	1.44297e-05
NC_018178.1\|WP_014855846.1\|1357087_1358077_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.94713e-105
NC_018178.1\|WP_014855839.1\|1348643_1349303_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.63397e-82
NC_018178.1\|WP_041356343.1\|1350916_1351381_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	7.28879e-70
NC_018178.1\|WP_014855833.1\|1344188_1345652_+\|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	1.6903e-37
NC_018178.1\|WP_014855840.1\|1349345_1350836_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.16607e-66
NC_018178.1\|WP_014855836.1\|1347035_1347557_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	0.000208811
NC_018178.1\|WP_014855842.1\|1351446_1352196_-\|cytidylate-kinase-like-family-protein	gnl\|CDD\|379060	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This family includes enzymes related to cytidylate kinase.	5.6665e-32
NC_018178.1\|WP_041355928.1\|1358085_1360860_-\|hypothetical-protein	gnl\|CDD\|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	1.94735e-34
NC_018178.1\|WP_014855845.1\|1356665_1356995_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.21702e-28
NC_018178.1\|WP_014855849.1\|1365479_1366319_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.62446e-11
NC_018178.1\|WP_014855848.1\|1364035_1365478_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|215475	PLN02880, PLN02880, tyrosine decarboxylase.	3.60206e-133
NC_018178.1\|WP_051015859.1\|1345641_1346691_+\|pseudaminic-acid-synthase	gnl\|CDD\|163337	TIGR03586, PseI, pseudaminic acid synthase. Members of this family are included within the larger pfam03102 (NeuB) family. NeuB itself (TIGR03569) is involved in the biosynthesis of neuraminic acid by the condensation of phosphoenolpyruvate (PEP) with N-Acetyl-D-Mannosamine. In an analagous reaction, this enzyme, PseI, condenses PEP with 6-deoxy-beta-L-AltNAc4NAc to generate pseudaminic acid.	0

>NC_018178.1|WP_157867530.1|1352346_1353387_-|prolyl-oligopeptidase-family-serine-peptidase
MILISFTTLFAQDVKEELKALKNSSESLDHRLDVLEKKIDDVIWFQRVGDVAFIDKVFLTGPPLWKEKNPTGQGAGNPVKFWSYIFIPKGIDYSQKYPVIVFPHGGVHANFSTYYTHIIRELIYQKYIVVAAEYRGSTGYGKSFYEKIDYGGLEIEDVNASRQFVLENYDFADKDRVGIIGWSHGGLIALMNVFEHPENYKVCFAGVPVSDLIARMGYKDDSYRALYSADYHIGQTADENVNEYRRRSPAWNAEKLKTPLLIHTNTNDEDVNVLEVEHLIKSLKAAGKKFEYEIFKDMPGGHSFDRLDTKAARQIRIKIYGFLDKYLDPPVKIKRLEDINKAAYLP
>NC_018178.1|WP_014855842.1|1351446_1352196_-|cytidylate-kinase-like-family-protein
MKVLGAYEKARIYIEKHYRDSEEARIHHRKLNPGPVITISRETGVGAAVICEKLVEYFNKRAIEGYDDWAYFDKALIEKIMEDHQLPDHFRKYLHEEKPPKIETWFGELLGVTPSKILLLRKISQTILKLADFGNVIIVGRGANIITAKRKNAFHIRLVAPLSYRIENACRLYNLDYKKAADFIREEDDARKQYIWKFFHKNIEDPLLYHAVINTNLMNPDEIAEMIGQCIVRKFPNFFSKEKILSLSA
>NC_018178.1|WP_041356343.1|1350916_1351381_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MKFELISPAFENEGMIPVRYTCDGENVSPPLKWNNIPEGAKSLALINDDPDAPAGDWIHWILYNIPPEIDYLPEGASNKKQIPPNSVEGLNDWGLNSYGGPCPPSGIHRYYFKLYALDTVLTADDKMTKKKLLGLMKGHILGEAVLMGKYKRAR
>NC_018178.1|WP_014855840.1|1349345_1350836_-|serine-hydrolase
MKTRNFLLILIFLSGHVLHAQSDKLKQLDEYIQNSMADWEMPGFAVSIVKDDSVIFAKGYGVREFGKDEKVDPNTLFVIASCSKAFTTAALAILVDRGKINWDDKVIDYLPDFQMYDPWVTNEITIRDLVTHRSGLATFSGDFLWLGSNYDRKEVIRRARRLKPVSSFRSKYGYQNIMFITAAEIIKAVTDTSWGDFIKEHFLVPLKMVNTNTSYKELAVSENKARAHYKKDGEIKVYTDIQKDNASGALGINSSVNDLAQWIRLQLNRGKIDSLVIFSEEQSKEMWSNHTAFGEMNYGLGWFIRYRNGKRMLYHGGGMPGMISTVALIPEENFGFALLSNMETGMVSAIRDYIVDLFTSVEPKDYNKIMLEKWEERLQKYEDELKRREEVRVKNTSPSLPLEKYCGKYEDKMYGEAKVSMKDGNLFLQFIPTPTFRGVLNHYHYDTFFIDWEDEFLTRGWIKFDMDFEGNVKRFTLEVPNSPDFIFTELLFEKKN
>NC_018178.1|WP_014855839.1|1348643_1349303_-|fumarylacetoacetate-hydrolase-family-protein
MKYLKIKNSNDEIPIGKIVCVGRNYAAHALELGNEVPEFPVIFLKTASNVIYSGDKVIHPDYSNNLHHEVELVLLIGKTVKNADDSSAEDAIAGYAVGLDMTLRDLQKEFMEKGDPWTLSKCFDTAAVLSEFVLKKDYKLRGDETIKLSVNGELRQNSSIKNMMFDPVKIVKYISSKMTLEKGDLIFTGTPEGVGRVVPGDKIHAELENIGTIDTEIIK
>NC_018178.1|WP_014855838.1|1348385_1348631_-|zinc-ribbon-domain-containing-protein
MPVYEYKCNDCGKKYEIFHKSITNPGEVECPDCKSKNYKKLLSSFSASTESASFDSSAGCSDGSCGVPSFGGCTTGTCGLN
>NC_018178.1|WP_014855836.1|1347035_1347557_+|DUF86-domain-containing-protein
MSKNKFILESVIKECNLHLKRMDYAFRKLKLRFPYSTDNLFQLNDDEIALMDQLIYRFTKLQDAIGKKLFKCVLIMLDEEVANKSQIDIFNRLEQLEIISDYERWKSLRELRNELSHEYGENDNESAEKINLLFEKIPDLKNYLDEIMKYLNKRQFFAVNIQCKDFDTVHILN
>NC_018178.1|WP_041355920.1|1346745_1347039_+|nucleotidyltransferase-domain-containing-protein
MRLSERDIEIIKKATKKFFGENASVYLFGSRTDDSKKGGDIDLYIETKVFQNIIDRKIKMLAELHKELGEQKIDIIINNFSSKKFIYHVAKSEGIRL
>NC_018178.1|WP_051015859.1|1345641_1346691_+|pseudaminic-acid-synthase
MRGDKVIIENFDTDKKVFIIAELSANHNQNFQTAIDSIKAIKECGADAVKLQTYTPDTITIDCDNEYFQIKQGTIWDGTTLYQLYQKAYTPWDWQPELKKIAEELGLVCFSSPFDKTAVDFLENMNVPAYKIASFEITDIPLIEYAASKGKPMIISTGIATEEDIRDAIDACKRMNNDQIALLKCTSSYPAPIEDANLNTIPYMKEKFNTAVGLSDHTMGTVAPVVAVALGARIIEKHFILDRNLGGPDSAFSLEPAEFKNMVEGIRNAEKALGKAAIEINEKIKKSRTFARSLFVVKDIKAGEPLTEENVRSIRPSHGLHPKYLKQILGRKAKTDIKKGTPLKWELFE
>NC_018178.1|WP_014855833.1|1344188_1345652_+|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase
MKISIITEGFQNTGYGHITRCLSLYQAFEERRIIPRFYINGDDKCASYLNGARFEIIDWLNHPAQLIKKIINSDFAIIDSYLAGREFYEKISNFCERLLIIDDNLRIDYPESIILNGTINAENFPYQKKTGYEFLLGSEYIPIRKPFWDSAQRKYNKEIKNILITFGGQDVRNLTIPVVKLVGEIYPEAVIHAVFGNKENGEIEKLKELYKDVKFYNLLNAQQIKELMLTADVVITAAGQTLYELAVTGTPSVAVVVADNQKNNILEWSKSGFLIEPIFYNEINCMKKIAEQLQKFKSIGLRKKCGSAGRKKVDGQGSRRVVSYLIERKCAVDKFYLRKAVSEDSEIVYELSNDPSVRSQSINKKPIEWDEHTIWFDGKIKDNNYLFLLAFDREDNFIGQIRFEIENNSAVVSISLTEKFRGKGLSKKIIKEGSRRLFNEYQNVGSITAYILPHNSASLRAFEAAGYKPDGEELINNELFKKFLLER
>NC_018178.1|WP_014855845.1|1356665_1356995_-|CRISPR-associated-endonuclease-Cas2
MRFNEYRIMWILVFFDLPTETALEKKAYARFRKELLKDGFTMFQFSIYIRHCPSRENMNVHVKRIKKMLPAKGHVGILKITDKQFGMMEIFYGKKKESGFVEPHQLELF
>NC_018178.1|WP_014855846.1|1357087_1358077_-|type-II-CRISPR-associated-endonuclease-Cas1
MIKRTLYIGNPAYLSMKNNQLTIRYKENLVESESKNYGTAAASDIDDGWLEKRMKAADALSHTLPIEDIGIIVLDHRQITLTHGLLDSLLDNNAAIVICNKSHMPSGLFMPLEGNNEQTKIINAQIESSLPLKKQLWAQTIAAKIRNQAMMLKKRNVKINNMITWSKKVRSGDPDNYEGRAAAYYWKNFFPMIPDFIRDRYGEPPNNLLNYGYAILRAIIARAIVGSGMLPTLGIHHSNKYNAYCLADDIMEPYRPFVDNVVYSIVSNGENFYELDSSIKRQLLNIGTLDVIIGGKRSPLMIAAQRTSSSLARCFEGKARKITYPELET
>NC_018178.1|WP_041355928.1|1358085_1360860_-|hypothetical-protein
MDTADHILERLRTVNFSENKIQNVSDEAIPKQILKSFIKKKSYEELIKGLNTYQAAYLLYGRHSEKEEIRCDSPKEYGKVVLKMLKPGELRNPLVESVMRETCSLVKEVWDKYGRIDEIHVELGRELKNNSKQRELISKAQKNNFDEKLKAKKILTELLNETAFEHYDEEGNKIISGFTVKPNPDNPKDIERFRLWKDQASVNEQDWNGKVKSEKIPTEQQLKKYILWLNQNCRSPYTGKIIPLSKLFDGNEYEIEHIIPRSKMKNDAMSNLIIAERIVNKAKGNELAANFISASNGYCSYEGKDIKIFTYDEYKHFVDDTFKNNRAKRKNLLATEVPDDFIERQINDTRYIGKKLGELLRPVLAEPNNMIFTVGSITSELKDNWGLNDVWKRLLKPRFERLEKILGQKLIYEYEDEYGNKKFGFKLSVNEKLEKNGIKRLDHRHHALDAIVIAATTREHIRYLNTLNASDTNEEIRKYRLTLCKRKIRDFKPPWNNFARDVKDSLESCVISFKENTPIVTKPYNKYEKWEIKNGKPVKIKEKQIKDGNGRWLAVRKSMFKEPQGIIWIKEKRNVPVLEAFKVQIERMKVERDPEKRRLAGYVYDRLARGLIKNIIDKIGGDIEDSDRLLTEVKKYLKKNSKKVDTGKIKKNGKNEYKTVYILDNYEFENIEIAEFVEYAAKRVSLDKSFTHDKINKIPYAKEGKSPLADLLHEHLSRYNDNATEAFSGEGLEALTKKAGKRIEKVTIHEKKSPDDKFGNKYVEVDKGAIAYFIIYENETTKERPEKYSLATHKAIERLIEGKSIAEIKEGFKTIILSPNDLVYVPTEEEQKKIKTNHPSPIDWDNKKEISERIYRMVSSSKSVCQFIQHRIANAIIPSNPKEKIKGEIDWHDKSPKTMDGKFNIADCCIKIQVDRLGNIKPLM
>NC_018178.1|WP_041355930.1|1360868_1361174_-|hypothetical-protein
MSSLGWSLSDNEGNSVRNDNYETFKLSSDQAQKLAEALSKLPALKKEYGSYSALAVRKMLMFMRVGKYWSHPQSIVSRLKEESAKEVKLKIKKRRKDFYIR
>NC_018178.1|WP_041355932.1|1361184_1363059_-|hypothetical-protein
MKKVLGLDIGTNSIGAALLNLPEHFENYGKEGSIEWCTSRIIPTEADYLQKFEEGAPVVTKAAARRQKRGSRRLKHRYKLRRTKLIRLFKIMNWLPEDFPLDNTKKIKEIIREQGAFVFRISDYAPISDDSYREFYKSFGYKDEELNEIIEEIKYRDTHKGKKRNDDIKLLPKDWAVYYLRKKGLSKKLTKDEIVRILYLFNQRRGFKSGRKDLEDTSLIDRSEFKQRLIIEDKGDFCEFQVKDEFKKDKCEIKFVSITKVSRIEETSETGRKGLKKFKIYLEDKSIMPYEVERKEKPQWEGNEFTFIVTQKIENGKFKQNTPQQPTENDWALCTTALNDKISSKHPGEFFFDELVNAHREGKDYKIRQYPVYRWRYEKELEAIWNKQCELNEELRKLNNNKDLIKKIIESFYPTQSKYNLHKAKELISKDLFHIISKDIIYFQRELKSQKNLIGECQYEKRKGIDGETYGLKCIPKSSPVFQEFRIWQDIHNIRLIRKEYTDEKGRRVLEVDETKSYINDNVKEKLFDLMNNKENVTEKDLLLVINECNESKPIKIDRKSKESSHYINLFRNRDILKGNETKHRYKKLFKNLEIDGNYIIEDETLLFKLWHADYSHDLADKEK
>NC_018178.1|WP_014855847.1|1363697_1364042_+|DUF971-domain-containing-protein
MRPLRIELHKQDYLEIEWDDGKIHKYPLKFLRDESPDAGNKGETILWKHYAPPPKGPEKPGMYEIESITPVGNYAIQIKWKDGYDYGIYSWEALRKFGEYLELKDNLHQDFDNH
>NC_018178.1|WP_014855848.1|1364035_1365478_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MPKRISDMTPEEFSAAGKRVIEWAERYLKDIETYRVLPDIKPGEINKRMPDSPPDFGEEFDKILEDVDRIVMPGITHWQHPKFMAYFASTASGPGILADIVSSTFNSNGMVWKSSPALTEVEAKTLEWYRSMLGLPGNFKGIIYDTASISSFHGIAAARDYKFPESRTKGMSSLPAMRLYCSEQAHSSIEKAAIALGVGIEGVRKIKVDSEFRMIPAELEKAINEDIAMGIDPFCVVATIGTTSTTSVDPVDAISSICRKYDLWLHVDAAYAGVTAMLPEMKIHFKGIENADSIVSNPHKWLFVPIDLSVFYTKRPETLKRAFSLVPEYLKTEVDAEVENLMDYGIQLGRRFRALKLWFVIRYFGVEGLKEILRKHIRLAQSFADWIRESNEFELLAPAPFSAVCFRAVPPGLKEEDLNKFNKLLLERINSTGELFLTHTVLNDKFTIRLVVSGIRQEERHVEEARKVIKREYETLLNNQ
>NC_018178.1|WP_014855849.1|1365479_1366319_-|alpha/beta-fold-hydrolase
MNFDPVINDPKHYDPDYPSSMIPVAFESKGSRLLGTYFTAAGKGPHPVIILLHGFPGNENNFDLAHVFRRQGFNVLTFHYRGCWGSQGDYSWENLPDDLGAAIEFIKSNRGNEKLRADTGKIILAGHSMGGFASLYYSVFSDEIKNVISMAGFNAGAFGELLKINKEIYNLSVEKIKFAATIVNNASAEGLLNQLINHIDDWNLLKYSSNLSLKNLLIIGAEYDTTAPLEIHHLPLIASLKMTGAELLEEHILRCGHSFADRRIELARIISNWLTKTRF
>NC_018178.1|WP_014855850.1|1366578_1368270_+|proline--tRNA-ligase
MKFSKSFLPTLKETPAEAVIPSHILMIRAGLVRQLSAGIYTWLPLGYKALRKVMDIIREEMNAIGGQEFHYPALNPKEIWEQTGRVEAFGDIMFHIKNRDYVLAPTHEEIVAWHAKGAVASYKELPQIWYQIQTKFRNEPRPRSGVIRGRQFIMKDSYSLDRSFEDLDKSYEMHDKAYRKIFDRCGLKYFVVGASSGAMGGSKSEEFMVRSDAGEDTVAYCEKCGYAANVEVAQSIAAPAKRHEESKEIYEIHTPGVKSIDELCEFLKIDEHETAKSRIYICDGKPVLVLMLGNDEVNETKLQAALGGNVRPAHPEELKEITGADAGSIGPVGFKHRIIADNLLKDANNLYSGANKNDYHIGGIDLKRDVPQIEYFDLRTVESGEKCVRCNSTLEVFKAIELGHIFKLGTKYSEALGVNYLDENGKEHPVVMGSYGIGVERVLACFLEQNYDERGIIWKKPLAPFNIHLIGLNMKNQTVSETSEQLYKELSSMGYEVLFDDRLDASAGFKFNDADLLGMPVQLIVGEKNLKNGNVEVKIRQSGEKIIVQLSELKDKLKELLDK
>NC_018178.1|WP_014855851.1|1368330_1369008_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKPKLYIVSTPIGNYEDITLRALKILRGCDFIICEEYREANRLLSEYDIKKELYSLNEHNEEENSYTLLEKIRQAESVALISDCGTPLFSDPGTLLVQLAIKNGIEVIPVPGSNSLMAALVGSGFDFKKFYYAGWISPKKDLRRRDLMRLKEIKELIVLMETPYRLVKILEDVTMHFGSSKQVVLAYNLTQKDEEFIRGTAGEALNVAKSRNLKGEFVLIIDNRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018178_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018178_4

2661872-2663357

Orphan

I-A,II-B,III-A

Consensus_repeat	Method
ATTTCAATTCTACAATAGTGCGATTAAAAC	PILER-CR
GTTTTAATCGCACTATTGTAGAATTGAAAT	CRISPRCasFinder
GTTTTAATCGCACTATTGTAGAATTGAAAT	CRT

22 spacers

The CRISPR arrays of NC_018178_4

>merge|NC_018178|4|2661872-2663357|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATCGCACTATTGTAGAATTGAAATCTGTTTCCGACGTTTGTTGTTCCGTCGTTTGTTGTTGTTTTAATCGCACTATTGTAGAATTGAAATTTCGCAAAAGCGGAATTAGTCTCTGTGATTGCAACTCGTTTTAATCGCACTATTGTAGAATTGAAATTATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCCGTTTTAATCGCACTATTGTAGAATTGAAATATGCTCAACACATGGTATATGTGTATATGCGAAAACAGTTTTAATCGCACTATTGTAGAATTGAAATTAATTTACAAGCCCGTAGTCAAGCCCGCAAAATTCGTTTTAATCGCACTATTGTAGAATTGAAATACGAAATGAAAATTTACAACATAGAACTCGATTACGTTTTAATCGCACTATTGTAGAATTGAAATAACAATTCCACCCAGCCCGACGGCTCTCGCCTTCTCGTTTTAATCGCACTATTGTAGAATTGAAATATGGCAGCGAGTCGTTCGTCGTCGATTTCCTTAGCGTTTTAATCGCACTATTGTAGAATTGAAATAATCGACGATAAGCGAAATTGCGGAGGACTACGGCTGTTTTAATCGCACTATTGTAGAATTGAAATTATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCCGTTTTAATCGCACTATTGTAGAATTGAAATATGCTCAACACATGGTATATGTGTATATGCGAAAACAGTTTTAATCGCACTATTGTAGAATTGAAATATATATGAGACATTGCGTCGGCGGATATTCTTCTCCGGGTTTTAATCGCACTATTGTAGAATTGAAATCTTAGTAAAACGTGGGAATATATCAGTGCGCTGGGAGTTTTAATCGCACTATTGTAGAATTGAAATAACACATGCTAATCATATTAGAAGAAACGCCCGGGTTTTAATCGCACTATTGTAGAATTGAAATGTACGGACAACCGCCAGAACATTATTATCTATTCGAGTTTTAATCGCACTATTGTAGAATTGAAATGCGCTACTTCTGCATGCGATTATCAGAATCGAGTCTGAGTTTTAATCGCACTATTGTAGAATTGAAATGAATACGATAATCCGTATGGAGACAAAGCGCTTTCGCGTTTTAATCGCACTATTGTAGAATTGAAATGCATTACGCCGTATTTGTCGAAGTCCAGTTTTTCGCGTTTTAATCGCACTATTGTAGAATTGAAATAGTTTTACGTAAACAAGAAGGTTGTACAGAGGATATGTTTTAATCGCACTATTGTAGAATTGAAATGTCTTGTCTTTCGCTATTACTGCGCCTTCAAGTCGCGTTTTAATCGCACTATTGTAGAATTGAAATTTGTTATCTTGCGGACGCTATGTAAATCCTCTCTAATGTTTTAATCGCACTATTGTAGAATTGAAATTCAATCCTGAATCGAATGGGCTGTAGTAATACTTTGGTTTTAATCGCACCCGACTCTGACGGGTAG

>NC_018178|4|3|2661872-2663291|PILER-CR
GTTTTAATCGCACTATTGTAGAATTGAAAT	CTGTTTCCGACGTTTGTTGTTCCGTCGTTTGTTGTT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TTCGCAAAAGCGGAATTAGTCTCTGTGATTGCAACTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGCTCAACACATGGTATATGTGTATATGCGAAAACA
GTTTTAATCGCACTATTGTAGAATTGAAAT	TAATTTACAAGCCCGTAGTCAAGCCCGCAAAATTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ACGAAATGAAAATTTACAACATAGAACTCGATTAC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AACAATTCCACCCAGCCCGACGGCTCTCGCCTTCTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGGCAGCGAGTCGTTCGTCGTCGATTTCCTTAGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AATCGACGATAAGCGAAATTGCGGAGGACTACGGCT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGCTCAACACATGGTATATGTGTATATGCGAAAACA
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATATATGAGACATTGCGTCGGCGGATATTCTTCTCCGG
GTTTTAATCGCACTATTGTAGAATTGAAAT	CTTAGTAAAACGTGGGAATATATCAGTGCGCTGGGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	AACACATGCTAATCATATTAGAAGAAACGCCCGG
GTTTTAATCGCACTATTGTAGAATTGAAAT	GTACGGACAACCGCCAGAACATTATTATCTATTCGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	GCGCTACTTCTGCATGCGATTATCAGAATCGAGTCTGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	GAATACGATAATCCGTATGGAGACAAAGCGCTTTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	GCATTACGCCGTATTTGTCGAAGTCCAGTTTTTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AGTTTTACGTAAACAAGAAGGTTGTACAGAGGATAT
GTTTTAATCGCACTATTGTAGAATTGAAAT	GTCTTGTCTTTCGCTATTACTGCGCCTTCAAGTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	TTGTTATCTTGCGGACGCTATGTAAATCCTCTCTAAT
GTTTTAATCGCACTATTGTAGAATTGAAAT

>NC_018178|4|4|2661872-2663291|CRISPRCasFinder
GTTTTAATCGCACTATTGTAGAATTGAAAT	CTGTTTCCGACGTTTGTTGTTCCGTCGTTTGTTGTT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TTCGCAAAAGCGGAATTAGTCTCTGTGATTGCAACTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGCTCAACACATGGTATATGTGTATATGCGAAAACA
GTTTTAATCGCACTATTGTAGAATTGAAAT	TAATTTACAAGCCCGTAGTCAAGCCCGCAAAATTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ACGAAATGAAAATTTACAACATAGAACTCGATTAC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AACAATTCCACCCAGCCCGACGGCTCTCGCCTTCTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGGCAGCGAGTCGTTCGTCGTCGATTTCCTTAGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AATCGACGATAAGCGAAATTGCGGAGGACTACGGCT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGCTCAACACATGGTATATGTGTATATGCGAAAACA
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATATATGAGACATTGCGTCGGCGGATATTCTTCTCCGG
GTTTTAATCGCACTATTGTAGAATTGAAAT	CTTAGTAAAACGTGGGAATATATCAGTGCGCTGGGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	AACACATGCTAATCATATTAGAAGAAACGCCCGG
GTTTTAATCGCACTATTGTAGAATTGAAAT	GTACGGACAACCGCCAGAACATTATTATCTATTCGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	GCGCTACTTCTGCATGCGATTATCAGAATCGAGTCTGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	GAATACGATAATCCGTATGGAGACAAAGCGCTTTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	GCATTACGCCGTATTTGTCGAAGTCCAGTTTTTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AGTTTTACGTAAACAAGAAGGTTGTACAGAGGATAT
GTTTTAATCGCACTATTGTAGAATTGAAAT	GTCTTGTCTTTCGCTATTACTGCGCCTTCAAGTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	TTGTTATCTTGCGGACGCTATGTAAATCCTCTCTAAT
GTTTTAATCGCACTATTGTAGAATTGAAAT

>NC_018178|4|2|2661872-2663357|CRT
GTTTTAATCGCACTATTGTAGAATTGAAAT	CTGTTTCCGACGTTTGTTGTTCCGTCGTTTGTTGTT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TTCGCAAAAGCGGAATTAGTCTCTGTGATTGCAACTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGCTCAACACATGGTATATGTGTATATGCGAAAACA
GTTTTAATCGCACTATTGTAGAATTGAAAT	TAATTTACAAGCCCGTAGTCAAGCCCGCAAAATTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ACGAAATGAAAATTTACAACATAGAACTCGATTAC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AACAATTCCACCCAGCCCGACGGCTCTCGCCTTCTC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGGCAGCGAGTCGTTCGTCGTCGATTTCCTTAGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AATCGACGATAAGCGAAATTGCGGAGGACTACGGCT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TATCTTTCTATGTATGCTTTCTCTCGTGCTCTATCC
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATGCTCAACACATGGTATATGTGTATATGCGAAAACA
GTTTTAATCGCACTATTGTAGAATTGAAAT	ATATATGAGACATTGCGTCGGCGGATATTCTTCTCCGG
GTTTTAATCGCACTATTGTAGAATTGAAAT	CTTAGTAAAACGTGGGAATATATCAGTGCGCTGGGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	AACACATGCTAATCATATTAGAAGAAACGCCCGG
GTTTTAATCGCACTATTGTAGAATTGAAAT	GTACGGACAACCGCCAGAACATTATTATCTATTCGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	GCGCTACTTCTGCATGCGATTATCAGAATCGAGTCTGA
GTTTTAATCGCACTATTGTAGAATTGAAAT	GAATACGATAATCCGTATGGAGACAAAGCGCTTTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	GCATTACGCCGTATTTGTCGAAGTCCAGTTTTTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	AGTTTTACGTAAACAAGAAGGTTGTACAGAGGATAT
GTTTTAATCGCACTATTGTAGAATTGAAAT	GTCTTGTCTTTCGCTATTACTGCGCCTTCAAGTCGC
GTTTTAATCGCACTATTGTAGAATTGAAAT	TTGTTATCTTGCGGACGCTATGTAAATCCTCTCTAAT
GTTTTAATCGCACTATTGTAGAATTGAAAT	TCAATCCTGAATCGAATGGGCTGTAGTAATACTTTG
GTTTTAATCGCACCCGACTCTGACGGGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018178.1\|WP_014856932.1\|2667443_2669105_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NC_018178.1\|WP_014856933.1\|2669156_2670605_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_018178.1\|WP_014856930.1\|2666347_2666767_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|234795
NC_018178.1\|WP_014856931.1\|2666848_2667430_+\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014856920.1\|2654147_2656226_+\|tungsten-formylmethanofuran-dehydrogenase-subunit-E	unknown	unknown	gnl\|CDD\|223101
NC_018178.1\|WP_014856922.1\|2657820_2658726_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NC_018178.1\|WP_014856923.1\|2659004_2659295_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NC_018178.1\|WP_041356069.1\|2649497_2650838_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|100096
NC_018178.1\|WP_014856924.1\|2659291_2660365_+\|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB	unknown	unknown	gnl\|CDD\|235942
NC_018178.1\|WP_014856934.1\|2670636_2672952_-\|response-regulator	unknown	unknown	gnl\|CDD\|381099
NC_018178.1\|WP_041356070.1\|2652626_2653316_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_018178.1\|WP_014856921.1\|2656238_2657801_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237000
NC_018178.1\|WP_051015880.1\|2665093_2665414_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NC_018178.1\|WP_014856925.1\|2660403_2661186_+\|2-oxoglutarate-oxidoreductase	unknown	unknown	gnl\|CDD\|239470
NC_018178.1\|WP_014856929.1\|2665544_2666321_+\|hypothetical-protein	unknown	unknown	unknown
NC_018178.1\|WP_014856935.1\|2673022_2675164_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|366374
NC_018178.1\|WP_014856927.1\|2664644_2665094_+\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NC_018178.1\|WP_014856917.1\|2650977_2652579_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_018178.1\|WP_041356594.1\|2675218_2675827_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_018178.1\|WP_014856926.1\|2661185_2661749_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|376567

Protein	Function_ID	Function_description	E-value
NC_018178.1\|WP_014856932.1\|2667443_2669105_+\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NC_018178.1\|WP_014856933.1\|2669156_2670605_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_018178.1\|WP_014856930.1\|2666347_2666767_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|234795	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL.	2.26785e-67
NC_018178.1\|WP_014856920.1\|2654147_2656226_+\|tungsten-formylmethanofuran-dehydrogenase-subunit-E	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	6.04132e-163
NC_018178.1\|WP_014856922.1\|2657820_2658726_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NC_018178.1\|WP_014856923.1\|2659004_2659295_+\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	4.33178e-09
NC_018178.1\|WP_041356069.1\|2649497_2650838_-\|phosphoglucosamine-mutase	gnl\|CDD\|100096	cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_018178.1\|WP_014856924.1\|2659291_2660365_+\|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	0
NC_018178.1\|WP_014856934.1\|2670636_2672952_-\|response-regulator	gnl\|CDD\|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.73144e-45
NC_018178.1\|WP_041356070.1\|2652626_2653316_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	3.32239e-56
NC_018178.1\|WP_014856921.1\|2656238_2657801_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	3.95874e-142
NC_018178.1\|WP_051015880.1\|2665093_2665414_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	9.60603e-05
NC_018178.1\|WP_014856925.1\|2660403_2661186_+\|2-oxoglutarate-oxidoreductase	gnl\|CDD\|239470	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.	4.25588e-80
NC_018178.1\|WP_014856935.1\|2673022_2675164_-\|S9-family-peptidase	gnl\|CDD\|366374	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region. This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.	6.00508e-87
NC_018178.1\|WP_014856927.1\|2664644_2665094_+\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	1.58555e-24
NC_018178.1\|WP_014856917.1\|2650977_2652579_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.14766e-50
NC_018178.1\|WP_041356594.1\|2675218_2675827_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	5.64023e-139
NC_018178.1\|WP_014856926.1\|2661185_2661749_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	gnl\|CDD\|376567	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.	3.05361e-38

>NC_018178.1|WP_014856926.1|2661185_2661749_+|2-oxoacid:acceptor-oxidoreductase-family-protein
MTEEIIIAGFGGQGVLSLGQILCYGGVIEDKEVSWMPSYGPEMRGGTANCITIISDSKISSPIISKFDTLIALNQPSLDKFENSIKPGGLLIYEASTILNPPKRTDIEILPVEAANEAAKLKNTRVMNMVVLGAYLKKKPVISFDTALEALKKVLPERYHHLIPLNKQAIEKGMELAEKVGDINYQN
>NC_018178.1|WP_014856925.1|2660403_2661186_+|2-oxoglutarate-oxidoreductase
MIAEESVCVEENLVYDRPKTLIDTTMHYCPGCGHGVAHRLIAEVIDELGIQDKTIGVAPVGCSVFAYNYLDIDMSEAAHGRATAVATGIKRMLPDKYVFSYQGDGDLAAIGTGETIHTCNRGENILIIFINNGIYGMTGGQMAPTTLVGMKSTTSPEGRIPELMGNPLKITELIAQLPGVYYCTRVAVNTPNNVRKAKKAILKGFQYQDHKKGLCFVEIVSNCPSNWKMTPVEANKWLEENMLPFYPLGDLKVPEIEGGK
>NC_018178.1|WP_014856924.1|2659291_2660365_+|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB
MKKELRLMKGNEALAEAAIRAGCDGYFGYPITPQSEVLEYLSKEAYKRTGMIVLQAESEVASINMVYGAAGTGKKVMTSSSSPGISLMQEGISYIACAELPCLIVNVMRGGPGLGTIQPSQGDYFQAVKGGGHGDYKLIVLAPSTVQEMVDFVPLSFDLAFKYKNPVMILADGALGQMMEKVELFDPIPRKNNTEEWATVGKPKNRERNIITSLHIEPDKMEEINHKLQKKYKEIEENEVRYEMINCDDADIIIVAFGLVARISSKAAELAREKGLKVGVFRPISLYPFPYEKLNRLAENVKGMLVTEMNAGQMVEDVKLAVNGKTDVHFYGRMGGIVPSPEEILAQLEEKFSGELV
>NC_018178.1|WP_014856923.1|2659004_2659295_+|ferredoxin-family-protein
MAKVKGDILIDIEKCKGCEICTVACPQSTLELSRKLNSKGYHYVVKIKDNCTGCTNCALVCPEGIIRVYRKTDKAKKEHLATITDVKNDITVTVRQ
>NC_018178.1|WP_014856922.1|2657820_2658726_+|lipoyl-synthase
MKINQHQKNFKEAIEKERQELGKRPEWLKVRLPSGENYKDVHRLMRKSKLNTVCEEAKCPNIAECWNRRTATFMILGDVCTRSCGFCNVKLGLPTELDLDEPRRVAESVEQLKLNHVVITSVNRDELKDGGASIFSETVRLIRSKMPSTTIEILIPDFKGETEAFEIIMQNPPDILNHNLETVKRLYHAVRPQAKYERSLKLIEWFKQRGLRTKSGIMVGIGESKEEVFDLMKDLYNAGCDIMTIGQYLQPTKNHLPVHRYVTLEEFKEYKDFGMSLGFKAVESSPLVRSSYHADKHAELS
>NC_018178.1|WP_014856921.1|2656238_2657801_+|2-oxo-acid-dehydrogenase-subunit-E2
MKVEIIMPQMGESITEGTVIKWHKKVGEEIKKDEILFEISTDKVDTEVPSPENGILKEILVKENETAEVGKVVAVLETDNSEYVDKAQDTPTTTQVGGEIVDIIMPKMGESITEGVIIKWHKKAGDKVAKDEILFEISTDKVDTEVPSPEEGILTEILYEENQTVEVGQTVAKLKTTTGLRPVTTAAETVEIAEEKEKSAAEEPLRKEETASRNANRFYSPSVINLARAEGIPLSELDTLEGTGLKGRLTKKDLERYIESRKSVAINQDVKKTEPASVSEYKRVSSDGVEIIPMDHTRRRIMEHMVKSRDTSVHVTAVAEVDMSVIYNFIKENKNKFAKENLKLTYMPFIAFAAVKALQQYPLMNSSIEGANIVMKKYINLGIAVAVEPNGLIVPNIKHAEEKSVIGLAKAIADLSERTRTKKLLPEDVQNGTFSITNYGVFGTLIGTPIINQPEVGILGVGAVVKKPVVVENEGVESIAIKPMMYLSLSHDHRLIDGMIGSKFLMSIKHILENFDTSSV
>NC_018178.1|WP_014856920.1|2654147_2656226_+|tungsten-formylmethanofuran-dehydrogenase-subunit-E
MNKDKSELILNEELTPTGKKDSFGGMNKKELLNVLRLMIMSRTIDDKQMTLLKQGKTFFHIPGSGHEAAQVAFGLQLKKGIDWAYPYYRDLAFMLAAGTKPEDVFLHFLARKNDPMCGGRQMPCHWSSKELNVPTQSSPTGTQFLQAVGTALALKKEGREGVVYVSSGEGATSEGEFFEAVNWASREKLPVVFLIENNKWAISVPVENQNAGRNSSVSELLKGFENLLRFEVDGTDFLKVHAIAKSAFKYARRGDGPALVEAHVVRLFSHSSSDDQKKYRPAESLAQDAQKDPIKLFSNYLIEKGFLNDLALEELYKEVRNHVNDAADWALKQPEPETNAAIKYVYDESDKKSKLTYEKSKSYGKNTVMVDAINHALKEELEFNDKIYIFGEDVADKKGGVFTATKGLSTQFGNERVFNSPLAEASIIGVAIGMSLAGLKPCVEIQFGDYIWPAFMQIRDELVMYRYRSNNLFETPVVIRVPVGGFIHGGLYHSQNIEGFFAHMPGLYIAYPSNAADAKGLLKTALRINDPVLFLEHKGLYRQSYATSPEPDAGYLLPFGKARKVTEGSDLSVITYGAMVHESAFAAKKLKEEGYSVEIIDIRTISPLDFEAVAESVKKTGKVAVIHEDTLTAGFGAEIAARISDECFEFLDAPVKRIAAKDSPIPYAPNLEKFVLPDRNKIYDRLKLLLKY
>NC_018178.1|WP_041356070.1|2652626_2653316_+|endonuclease-III
MLDKLNRRLIEHFGVPERNKRKPAPVDLLIATILSQNTNDNNSYEAYQNLKRKYSDWNQLVKAPLKEIEKTIKKAGLTNQKAGAIKNLVVNLSRDNRLDMKFIKKMDNKEALEYLTSFKGIGIKTASCVLLFSLYRNVCPVDTHVHRTLNRIGIVNEKSPEKTFLRINENLPEGIAHSLHTNLIKLGRGICRPTNPDCTVCPISDLCAYPEKKHSKSSKTKEKRLFIAR
>NC_018178.1|WP_014856917.1|2650977_2652579_+|PAS-domain-containing-sensor-histidine-kinase
MNHKIANSEHWTQIDPYELLDVLIDTDDMFCLLDQDFKILRCNNKFKSYMVLYGRAGYDEGCNFLEIFPLDDRLYWEKVLNKALTVKSFTETYTSEKLKGRYFEIHFHRMKLDDNKSGIVLRARDITEKKNIEDKIIQSELFAQSILSTSPDAIVTTELDGSISYASNKFLSLLGIEKVEDTFSKNIVDFIYEQDKELFRENISVAAAGSSIKSYLFRLKDINGNPVYAESNIGVILNENKKPVLILFIIRDIQDRIEAELEREKLLQDIAYSRDQIEQEAARYVELNVQLAESEKKLIELNSAKDKLFSIIGHDLKNPIFTILGFSQILEEDYEEMTDEKKLEYIKTIYQTAASIQKLLENLLTWSRAQTGRLEVNLEPISIRNVINETVDIVATQAEKKNIEIIVNLNSTLMVYADNNLLETVVRNLLTNAIKFTNPGGRITVSTRDENGFVVVSVEDTGIGLSEADKNKLFRIDVNNAEIGHHKEKGTGLGLILCKEFCEKMGGSIWVESTLGKGSAFYFTVPIFQYINK
>NC_018178.1|WP_041356069.1|2649497_2650838_-|phosphoglucosamine-mutase
MDTLMVSISGIRGIIGKGLYPSTIVEYTSAYADFCGKGKIVVGSDGRISGNMVKNIVIGTLLAKGNDVIDLGICPTPTVLFNVKNLKAVGGIQISASHNPNEWNALKLLNKKGEFMSPEEHKKMISLLKETQNRYAKWNELGSVTHYEKGLYDHIDAILSMPYIDLKKIRRKKFKVVLDCVNGAGAYSMPYLLKKFGCEIIETNCDKSGIFPRLPEPAPENLTKTMKLVKKSKADFGIVVDPDVDRLVLITENGKPFGEENTITQAVKFILSRRKGNVVVNLSTTRAVDDVAKSFKSKVYRSPVGEANVVKKMKQVKAVIGGEGSGGVILPSVNFGRDALVGTALLLQHLTEFGGTMTELKNELPRYFIVKRKIEIGRRDPDKILNKLAKKYSKHNPNNEDGLRIDFEDHWVHFRKSNTEPIIRCIVEADSQKKAIELIEKYLKEL
>NC_018178.1|WP_014856927.1|2664644_2665094_+|SRPBCC-domain-containing-protein
MKKSDKPIIVEQVFNASRTDVWNALTDIDEMKKWYFENIPAFEPVNGFKTSFNVISNGRNFLHKWEVTEVIPEERIAYTWRFEGYGGLSTTDFFLKEENGGVRLILTVTVQEDFQENIEEFKRESCIGGWNYFINERLKNYLESIIRKD
>NC_018178.1|WP_051015880.1|2665093_2665414_+|hypothetical-protein
MMSRFILLYIGDGKSGDPEKDSDNYNKYMEWLGKLNKILVSPANPLKDNTIVKSDRIIENVSVTGLSGYTIIEAANIKEAAEISKGCPFLDSGGVIEIAELIQMNR
>NC_018178.1|WP_014856929.1|2665544_2666321_+|hypothetical-protein
MKRYIYVLTVIILLAGISEGQTVRKGFNFLSISDSADTIVTTVFASGDVKGLAAGENKEELATNGALGVSMAIRDILITASINVATTMDTLNNTFSNIILNPSNGSGLRSGLLDFRKKKIFNNFNLHMYATVSTSTWKIENEIKDVTVGGIGVLIERALISNNEENEVTLSYELGLSVRTLMGELASNEEKRLRFLNTKNSVFGGLEGGMTIRVNNLIASLQFYYFIGDHVNGVTGGQLATGISISTNLFSFKSKYED
>NC_018178.1|WP_014856930.1|2666347_2666767_+|large-conductance-mechanosensitive-channel-protein-MscL
MKVIDEFKKFAIRGNVIDMAIGIIIGSAFGKIVSSFVNDVIMPPIGWLIGNVDFSELALVLKDKTDTADAVTIRYGVFLNTVIDFLIIAFTIFVVIKQINRLRKKEEEPKPAPTTKECPKCFTLIPIKASRCPNCTSEI
>NC_018178.1|WP_014856931.1|2666848_2667430_+|hypothetical-protein
MELDLITDIHKYCDNWCDRCIYSTRCELFIETIYKNERKKAVFNPEGFFNVLRDLFVQAYDSFEIYRPDSSGIEELSELYGAESNNWLEKNELFLKDNNKNTDITDALDVIRYYQYFISLKVKKSFESDIDEKLIQLKLAEVAASRSISAWYIIFKETGSEDIGKIIGILKSILILVDESNPELKSFYRPYFD
>NC_018178.1|WP_014856932.1|2667443_2669105_+|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MENEKPKNFIYEIIDEDIRTNKWGGRVHTRFPPEPNGYLHIGHAKSICLNYGIARDYNGKFNLRFDDTNPEKEETEYVESIIEDVKWLGADFEDRIFYASDYFEQMYQYAVELIKKGKAYVCDLSAEEIRKTRGTLTEPGVESPYRNRTVEENLDLFERMRKGEFPTGSKTLRAKIDMASPNLNLRDPVMYRILHAEHHRQGNKWCIYPTYDWAHGLEDSIEGITHSICTLEFENHRPLYDWFLDELNIYHPQQIEFARLNLSYTVMSKRRLLQLVKDGYVDGWDDPRMPTISGLRRRGFTPESLWNFAELVGVAKRDAMTDIALLEFAIRDDLNKRANRAMAVLDPVKVVLVNYEGEEEVEAVNNPEDPSAGTRKIKFTKELYIDRADFMEDPPKGFRRLIPGGEVRLRYAYIIKCEEVIKDDNGNIIELRCTYDPDTKSGSGASNKKVKGTIHWVSAKYAAEAEVRLYDRLFTIEDPAAEKNWLDYINPVSLKVIENAYIEPSLKDSKPGEIFQFERQGYFCVDSKYSTPEKLVFNRTVTLKDSWAKKKGQ
>NC_018178.1|WP_014856933.1|2669156_2670605_-|glutamate--tRNA-ligase
MNIRVRFAPSPTGYLHVGGLRTALYNYLFARKNNGKFILRIEDTDRNRYVEGAVENLINSLKWCGLDYDEGPDAGGDFGPYLQSQRLDIYKKYAEELISKGHAYYCFCTPERLEELRKEQMAKKLPQAKYDKHCLRLSKDEIEKKLSENIPHVVRLNVEPGKKIIFEDVIRGTVEFDSDNIDDQVLIKSDGFPTYHMANVVDDYLMQISHVIRGEEWLSSTPKHVLLYNFLGWNLPVFAHLPLLLNPDRSKLSKRQGDVAVEDYRAKGYLKEALINFVALLGWNAGDDKEFYYIDELIEKFSLERVNKSGAVFDIEKLNWLNAEHLRAKPESELLLMLKDEMNKSKYANANYTDEYLLSVIRAMKERVSFAYEFITKSPYFFEAPSSYEEKAVEKNWKSETPGYMTKLRDKFSALENPSKEDYEKALKETASELGIGAGKLIHPLRLAVSGMSAGPGIYDILFIIGKEETIKRINRALEILK
>NC_018178.1|WP_014856934.1|2670636_2672952_-|response-regulator
MNQLINGINELIEFAISGDESFYNEICRFLVRNFNLHSVSLFSLSDKTNLKLIGKSDNVTLEGGGDFSCTNCRVINNNLINTLNFDSNCGIPTDTSKFNACLMATDNAGNRFVVSISKKSPIDKNDKLNIESASALISRLLSLRTPVHKFNQPSAEIYELINNFSDDIRNITNTIIGSVTLLSEKSDSGLKPENFSPIRRSAQSILLYLNDLKESTRILSGDFSVNKKDVEVTQVLEDLIKLFRHRSNNKFKFDVDLKIDGTIKSDEFKLRYVFSNLIYTASLLSTSGNFTVKGSNRESGGIEMTLTASDAVGIPVDIIKNFFKPFVIKKINEIKNSNLTGLSLYLAKKYLNLLNGDISVVHFNDQLIFKITIDGAIMSDIDKTLSGLPKPDTENKVLVIEDDYATSKLLSNYLNKWGYKPIIVSTEQEAFDFINSESLLAVILDIELPNTNGLELLRKIHEHEKTKNVPVIVCSIEHEQQKAFMMGAVEYFVKPINYNYLVEVLTSYKLRKDSNILCVDDDVPTLNLVKQAIESAGFKPVAENVSANVMDLIKDKDIDLAIIDLDMPHPNGFELIKMIKSEPRFAHLPIIIYTGKENYQEDLKNIEGLFDDLLEKRSTNIEDLADTIRQMINQYEVPPPEEEVLTKKGVKKILLAEDYKHSQIIVTRLLKKNNFEDIVVVENGEDAVNMAKKEKFDLILMDMQMPIMNGFEATEKIRQMPEYKNVPIIALTAFAMKGDKEKCLEAGATDYIPKPIDSKEFIDKIKYYTNS
>NC_018178.1|WP_014856935.1|2673022_2675164_-|S9-family-peptidase
MSRFKLIVICFLLAPAFIFSQKKNFTVEDVIINAYSKLMPENLSQLQWIPASHDFSFVKDKFILAGSVDSEKYDTLSSLDKINALLSEKGYDKINYLPPISWIDENEFNFIYDNKLIRVNVEANTAEVINRAPEEAENLTVAPNNRYLAFTIKNNLYVSLDGKEFKAVTNEPDSNIICGQSVHRNEFGINGGIFWSPNSDFIAFYRMDQTMVSDYPLLDISSKPARIKNIKYPMAGQASHHVTVGIYKIDDESTTWLNTGEPKDQYLTSLTWSPDQKNFFIAHLNRDQNHLKLIKYDVSSGEPVKTLFEERDDKYVEPETPLYFIPGSPNKFVWLSERDGYKHAYLYDTDGNLLKQLTKGEWVITDFDGFDKDGKYLFFTATKESPLERHYYRLELKNDKLEKITKEPGTHSVRRSDDGDFFIDNYSNYDTPRKIVLANYNNTLRNLLTADDPLSEYNLGKTEVFTIKNKEGIDLYCRMILPPDFDPAKKYPVIFYVYGGPHAQLITNSFGYGRYFIWFYMMAQKGYIVFTLDNRGSDNRGLEFEQATFRRLGTVEIEDQLCGVEYLKKLSYVDTSRFGVFGWSYGGFMAASLMLRTGNQFKAGVGGGAVIDWSLYEVMYTERYMDTPESNPEGYKESSLLNYVDNLKGKLLLVHGTFDPVVVWQHTLLFAEKAMHLNKPLDYFPYVKHEHGVRGRDALHLYTKITDYFVDNL
>NC_018178.1|WP_041356594.1|2675218_2675827_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MVPYVIEQTGRGERGMDIFSRLLRERIVFLGTAIDDHIASLIIAQLLFLEAEDPDKDIYLYINSPGGSVSAGLAIYDTMKYIRSKVSTICVGLAASMGAVLLAGGEAGKRSALPHSKIMIHQPWVGGLQGQTTDIEIHAKEMIKTRDTIYKILAEHTGKSYEQIAKDCDRDYFMTAEEAKEYNLIDNILTHRVNPSDNKSKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_018178_3	3.8\|1355563\|30\|NC_018178\|CRISPRCasFinder	1355563-1355592	30	NC_018178.1	188741-188770	0	1.0
NC_018178_3	3.26\|1355564\|30\|NC_018178\|PILER-CR	1355564-1355593	30	NC_018178.1	188741-188770	0	1.0

1. spacer 3.8|1355563|30|NC_018178|CRISPRCasFinder matches to position: 188741-188770, mismatch: 0, identity: 1.0

gtaagcaattttaactcctccgtcgattct	CRISPR spacer
gtaagcaattttaactcctccgtcgattct	Protospacer
******************************

2. spacer 3.26|1355564|30|NC_018178|PILER-CR matches to position: 188741-188770, mismatch: 0, identity: 1.0

gtaagcaattttaactcctccgtcgattct	CRISPR spacer
gtaagcaattttaactcctccgtcgattct	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	233118-233147	4	0.867
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	233118-233147	4	0.867
NC_018178_3	3.3\|1355188\|28\|NC_018178\|CRISPRCasFinder	1355188-1355215	28	NZ_CP025798	Vibrio owensii strain 051011B plasmid unnamed1	76408-76435	5	0.821
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	152738-152766	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	MN655998	Escherichia phage E26, complete genome	81788-81816	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	MT764208	Escherichia phage JEP8, complete genome	162458-162486	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	33834-33862	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	MN709127	Escherichia virus Ec_Makalu_002, complete genome	82322-82350	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	NC_041936	Escherichia phage ECD7, complete genome	84036-84064	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	82747-82775	5	0.828
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	NC_012740	Enterobacteria phage JSE, complete genome	85546-85574	5	0.828
NC_018178_3	3.3\|1355188\|28\|NC_018178\|CRISPRCasFinder	1355188-1355215	28	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	29040-29067	6	0.786
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	726699-726728	6	0.8
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	667195-667224	6	0.8
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	318987-319016	6	0.8
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	725508-725537	6	0.8
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	318987-319016	6	0.8
NC_018178_3	3.11\|1355791\|30\|NC_018178\|CRISPRCasFinder	1355791-1355820	30	MN694493	Marine virus AFVG_250M720, complete genome	21867-21896	6	0.8
NC_018178_3	3.11\|1355791\|30\|NC_018178\|CRISPRCasFinder	1355791-1355820	30	MN694469	Marine virus AFVG_250M722, complete genome	21835-21864	6	0.8
NC_018178_3	3.11\|1355791\|30\|NC_018178\|CRISPRCasFinder	1355791-1355820	30	MN694809	Marine virus AFVG_250M721, complete genome	20633-20662	6	0.8
NC_018178_3	3.14\|1356019\|29\|NC_018178\|CRISPRCasFinder	1356019-1356047	29	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	94462-94490	6	0.793
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	NZ_CP032740	Enterococcus casseliflavus strain EC-369 plasmid pEC369, complete sequence	91560-91589	6	0.8
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	NC_004974	Fusobacterium nucleatum plasmid pFN1, complete sequence	5397-5426	6	0.8
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	NC_002002	Fusobacterium nucleatum plasmid pPA52, complete sequence	2003-2032	6	0.8
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	NZ_CP053470	Fusobacterium nucleatum strain Fn12230 plasmid pFN1, complete sequence	890-919	6	0.8
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	AP013393	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C72-MedDCM-OCT-S43-C21	35238-35267	6	0.8
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	29040-29068	6	0.793
NC_018178_3	3.21\|1355188\|29\|NC_018178\|PILER-CR	1355188-1355216	29	NZ_CP025798	Vibrio owensii strain 051011B plasmid unnamed1	76407-76435	6	0.793
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	726699-726728	6	0.8
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	667195-667224	6	0.8
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	318987-319016	6	0.8
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	725508-725537	6	0.8
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	318987-319016	6	0.8
NC_018178_3	3.29\|1355792\|30\|NC_018178\|PILER-CR	1355792-1355821	30	MN694493	Marine virus AFVG_250M720, complete genome	21867-21896	6	0.8
NC_018178_3	3.29\|1355792\|30\|NC_018178\|PILER-CR	1355792-1355821	30	MN694469	Marine virus AFVG_250M722, complete genome	21835-21864	6	0.8
NC_018178_3	3.29\|1355792\|30\|NC_018178\|PILER-CR	1355792-1355821	30	MN694809	Marine virus AFVG_250M721, complete genome	20633-20662	6	0.8
NC_018178_3	3.32\|1356020\|29\|NC_018178\|PILER-CR	1356020-1356048	29	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	94462-94490	6	0.793
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	NZ_CP032740	Enterococcus casseliflavus strain EC-369 plasmid pEC369, complete sequence	91560-91589	6	0.8
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	NC_004974	Fusobacterium nucleatum plasmid pFN1, complete sequence	5397-5426	6	0.8
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	NC_002002	Fusobacterium nucleatum plasmid pPA52, complete sequence	2003-2032	6	0.8
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	NZ_CP053470	Fusobacterium nucleatum strain Fn12230 plasmid pFN1, complete sequence	890-919	6	0.8
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	AP013393	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C72-MedDCM-OCT-S43-C21	35238-35267	6	0.8
NC_018178_3	3.1\|1355037\|29\|NC_018178\|CRISPRCasFinder	1355037-1355065	29	NZ_CP043609	Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence	55599-55627	7	0.759
NC_018178_3	3.1\|1355037\|29\|NC_018178\|CRISPRCasFinder	1355037-1355065	29	NZ_CP036540	Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence	14976-15004	7	0.759
NC_018178_3	3.1\|1355037\|29\|NC_018178\|CRISPRCasFinder	1355037-1355065	29	NZ_CP036547	Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_1, complete sequence	67956-67984	7	0.759
NC_018178_3	3.4\|1355262\|30\|NC_018178\|CRISPRCasFinder	1355262-1355291	30	NC_017233	Borreliella afzelii PKo plasmid lp28-3, complete sequence	13046-13075	7	0.767
NC_018178_3	3.4\|1355262\|30\|NC_018178\|CRISPRCasFinder	1355262-1355291	30	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	1747-1776	7	0.767
NC_018178_3	3.5\|1355338\|29\|NC_018178\|CRISPRCasFinder	1355338-1355366	29	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	145412-145440	7	0.759
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1363807-1363836	7	0.767
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1216502-1216531	7	0.767
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1453955-1453984	7	0.767
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	NZ_CP026539	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence	68399-68428	7	0.767
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	NZ_CP028237	Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence	33018-33047	7	0.767
NC_018178_3	3.22\|1355263\|30\|NC_018178\|PILER-CR	1355263-1355292	30	NC_017233	Borreliella afzelii PKo plasmid lp28-3, complete sequence	13046-13075	7	0.767
NC_018178_3	3.22\|1355263\|30\|NC_018178\|PILER-CR	1355263-1355292	30	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	1747-1776	7	0.767
NC_018178_3	3.23\|1355339\|29\|NC_018178\|PILER-CR	1355339-1355367	29	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	145412-145440	7	0.759
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1363807-1363836	7	0.767
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1216502-1216531	7	0.767
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1453955-1453984	7	0.767
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	NZ_CP026539	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence	68399-68428	7	0.767
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	NZ_CP028237	Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence	33018-33047	7	0.767
NC_018178_3	3.9\|1355639\|30\|NC_018178\|CRISPRCasFinder	1355639-1355668	30	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1277277-1277306	8	0.733
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	AP022646	Bacillus wiedmannii PL1 plasmid pBwiPL1-3 DNA, complete sequence	5726-5755	8	0.733
NC_018178_3	3.13\|1355943\|30\|NC_018178\|CRISPRCasFinder	1355943-1355972	30	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	547775-547804	8	0.733
NC_018178_3	3.13\|1355943\|30\|NC_018178\|CRISPRCasFinder	1355943-1355972	30	NZ_CP017242	Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence	8641-8670	8	0.733
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	AP013758	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, * SEQUENCING IN PROGRESS *	5446-5475	8	0.733
NC_018178_3	3.16\|1356170\|30\|NC_018178\|CRISPRCasFinder	1356170-1356199	30	AP014437	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, * SEQUENCING IN PROGRESS *, 5 ordered pieces	1154-1183	8	0.733
NC_018178_3	3.17\|1356246\|30\|NC_018178\|CRISPRCasFinder	1356246-1356275	30	MW145137	Providencia phage PSTNGR2lys, complete genome	3574-3603	8	0.733
NC_018178_3	3.27\|1355640\|30\|NC_018178\|PILER-CR	1355640-1355669	30	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1277277-1277306	8	0.733
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	AP022646	Bacillus wiedmannii PL1 plasmid pBwiPL1-3 DNA, complete sequence	5726-5755	8	0.733
NC_018178_3	3.31\|1355944\|30\|NC_018178\|PILER-CR	1355944-1355973	30	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	547775-547804	8	0.733
NC_018178_3	3.31\|1355944\|30\|NC_018178\|PILER-CR	1355944-1355973	30	NZ_CP017242	Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence	8641-8670	8	0.733
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	AP013758	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, * SEQUENCING IN PROGRESS *	5446-5475	8	0.733
NC_018178_3	3.34\|1356171\|30\|NC_018178\|PILER-CR	1356171-1356200	30	AP014437	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, * SEQUENCING IN PROGRESS *, 5 ordered pieces	1154-1183	8	0.733
NC_018178_3	3.35\|1356247\|30\|NC_018178\|PILER-CR	1356247-1356276	30	MW145137	Providencia phage PSTNGR2lys, complete genome	3574-3603	8	0.733
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1249647-1249676	9	0.7
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1370796-1370825	9	0.7
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1223701-1223730	9	0.7
NC_018178_3	3.12\|1355867\|30\|NC_018178\|CRISPRCasFinder	1355867-1355896	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1000198-1000227	9	0.7
NC_018178_3	3.18\|1356322\|30\|NC_018178\|CRISPRCasFinder	1356322-1356351	30	NC_005893	Lactobacillus phage phiAT3, complete genome	32852-32881	9	0.7
NC_018178_3	3.18\|1356322\|30\|NC_018178\|CRISPRCasFinder	1356322-1356351	30	AY605066	Bacteriophage phi AT3, complete sequence	32852-32881	9	0.7
NC_018178_3	3.18\|1356322\|30\|NC_018178\|CRISPRCasFinder	1356322-1356351	30	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	203115-203144	9	0.7
NC_018178_3	3.19\|1356398\|29\|NC_018178\|CRISPRCasFinder	1356398-1356426	29	NZ_CP030851	Runella sp. HYN0085 plasmid unnamed1, complete sequence	38105-38133	9	0.69
NC_018178_3	3.19\|1356398\|29\|NC_018178\|CRISPRCasFinder	1356398-1356426	29	NZ_CP030855	Runella sp. HYN0085 plasmid unnamed5, complete sequence	11882-11910	9	0.69
NC_018178_3	3.20\|1356473\|30\|NC_018178\|CRISPRCasFinder	1356473-1356502	30	NZ_CP018333	Acinetobacter baumannii strain A1296 isolate A1296 plasmid pA1296_1, complete sequence	58859-58888	9	0.7
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1249647-1249676	9	0.7
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1370796-1370825	9	0.7
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1223701-1223730	9	0.7
NC_018178_3	3.30\|1355868\|30\|NC_018178\|PILER-CR	1355868-1355897	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1000198-1000227	9	0.7
NC_018178_3	3.36\|1356323\|30\|NC_018178\|PILER-CR	1356323-1356352	30	NC_005893	Lactobacillus phage phiAT3, complete genome	32852-32881	9	0.7
NC_018178_3	3.36\|1356323\|30\|NC_018178\|PILER-CR	1356323-1356352	30	AY605066	Bacteriophage phi AT3, complete sequence	32852-32881	9	0.7
NC_018178_3	3.36\|1356323\|30\|NC_018178\|PILER-CR	1356323-1356352	30	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	203115-203144	9	0.7
NC_018178_3	3.37\|1356399\|29\|NC_018178\|PILER-CR	1356399-1356427	29	NZ_CP030851	Runella sp. HYN0085 plasmid unnamed1, complete sequence	38105-38133	9	0.69
NC_018178_3	3.37\|1356399\|29\|NC_018178\|PILER-CR	1356399-1356427	29	NZ_CP030855	Runella sp. HYN0085 plasmid unnamed5, complete sequence	11882-11910	9	0.69
NC_018178_3	3.38\|1356474\|30\|NC_018178\|PILER-CR	1356474-1356503	30	NZ_CP018333	Acinetobacter baumannii strain A1296 isolate A1296 plasmid pA1296_1, complete sequence	58859-58888	9	0.7
NC_018178_4	4.12\|2662628\|38\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662628-2662665	38	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	118837-118874	9	0.763
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	AF323669	Bacteriophage bIL286, complete genome	15073-15106	10	0.706
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	NC_002667	Lactococcus prophage bIL286, complete genome	15073-15106	10	0.706
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	KX160204	Lactococcus phage 38502, complete genome	12602-12635	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	MN689509	Lactococcus phage CHPC1175, complete genome	34249-34282	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	MN689521	Lactococcus phage CHPC836, complete genome	34012-34045	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	MN689516	Lactococcus phage CHPC148, complete genome	30781-30814	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	NC_004746	Lactococcus phage 4268, complete genome	11213-11246	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	AF323670	Bacteriophage bIL309, complete genome	13034-13067	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	MN689530	Lactococcus phage CHPC974, partial genome	31595-31628	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	NC_002668	Lactococcus prophage bIL309, complete genome	13034-13067	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	AF489521	Lactococcus bacteriophage 4268, complete genome	11213-11246	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	DQ394806	Lactococcus phage ul36.k1, complete genome	15365-15398	11	0.676
NC_018178_4	4.14\|2662762\|34\|NC_018178\|PILER-CR,CRISPRCasFinder,CRT	2662762-2662795	34	NC_004066	Lactococcus phage ul36, complete genome	15032-15065	11	0.676
NC_018178_2	2.16\|930715\|37\|NC_018178\|CRISPRCasFinder,CRT,PILER-CR	930715-930751	37	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	132726-132762	13	0.649
NC_018178_2	2.16\|930715\|37\|NC_018178\|CRISPRCasFinder,CRT,PILER-CR	930715-930751	37	MT939486	Erwinia phage pEa_SNUABM_12, complete genome	133469-133505	13	0.649
NC_018178_2	2.16\|930715\|37\|NC_018178\|CRISPRCasFinder,CRT,PILER-CR	930715-930751	37	NC_041917	Serratia phage BF, complete genome	133441-133477	13	0.649
NC_018178_2	2.16\|930715\|37\|NC_018178\|CRISPRCasFinder,CRT,PILER-CR	930715-930751	37	MT939488	Erwinia phage pEa_SNUABM_50, complete genome	132606-132642	13	0.649

1. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 4, identity: 0.867

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggcaac	Protospacer
*. **.****************** *****

2. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 4, identity: 0.867

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggcaac	Protospacer
*. **.****************** *****

3. spacer 3.3|1355188|28|NC_018178|CRISPRCasFinder matches to NZ_CP025798 (Vibrio owensii strain 051011B plasmid unnamed1) position: , mismatch: 5, identity: 0.821

ataagctgattgctaaaaatgttctgat	CRISPR spacer
atatgctgattgctaaaaatgatgggtt	Protospacer
*** ***************** *  * *

4. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

5. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

6. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

7. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

8. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

9. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

10. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

11. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 5, identity: 0.828

ataagctg-attgctaaaaatgttctgatt	CRISPR spacer
-tagtcggtattgctaaaaatggtctgatt	Protospacer
 **. * * ************* *******

12. spacer 3.3|1355188|28|NC_018178|CRISPRCasFinder matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 6, identity: 0.786

ataagctgattgctaaaaatgttctgat	CRISPR spacer
aacgactgattgataaaaatattctgat	Protospacer
*  ..******* *******.*******

13. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

14. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

15. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

16. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

17. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

18. spacer 3.11|1355791|30|NC_018178|CRISPRCasFinder matches to MN694493 (Marine virus AFVG_250M720, complete genome) position: , mismatch: 6, identity: 0.8

agaattgggcagacgaggtctat--aaatggt	CRISPR spacer
acaattgggcagacgaggtcaatcctattg--	Protospacer
* ****************** **   * **

19. spacer 3.11|1355791|30|NC_018178|CRISPRCasFinder matches to MN694469 (Marine virus AFVG_250M722, complete genome) position: , mismatch: 6, identity: 0.8

agaattgggcagacgaggtctat--aaatggt	CRISPR spacer
acaattgggcagacgaggtcaatcctattg--	Protospacer
* ****************** **   * **

20. spacer 3.11|1355791|30|NC_018178|CRISPRCasFinder matches to MN694809 (Marine virus AFVG_250M721, complete genome) position: , mismatch: 6, identity: 0.8

agaattgggcagacgaggtctat--aaatggt	CRISPR spacer
acaattgggcagacgaggtcaatcctattg--	Protospacer
* ****************** **   * **

21. spacer 3.14|1356019|29|NC_018178|CRISPRCasFinder matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gagagaaggggtgggcgactgtcaaggca	CRISPR spacer
tagagaaggggagggcgactgccaaaaga	Protospacer
 ********** *********.***.. *

22. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to NZ_CP032740 (Enterococcus casseliflavus strain EC-369 plasmid pEC369, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttttactgtatctttcataa	Protospacer
************.***** ****...** *

23. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to NC_004974 (Fusobacterium nucleatum plasmid pFN1, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatgtctttttctactaaatcttttaatg	Protospacer
**** ************.*****..** *.

24. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to NC_002002 (Fusobacterium nucleatum plasmid pPA52, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatgtctttttctactaaatcttttaatg	Protospacer
**** ************.*****..** *.

25. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to NZ_CP053470 (Fusobacterium nucleatum strain Fn12230 plasmid pFN1, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatgtctttttctactaaatcttttaatg	Protospacer
**** ************.*****..** *.

26. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to AP013393 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C72-MedDCM-OCT-S43-C21) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttctactacatctatttttc	Protospacer
*****************. **** .* **

27. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 6, identity: 0.793

ataagctgattgctaaaaatgttctgatt	CRISPR spacer
aacgactgattgataaaaatattctgatt	Protospacer
*  ..******* *******.********

28. spacer 3.21|1355188|29|NC_018178|PILER-CR matches to NZ_CP025798 (Vibrio owensii strain 051011B plasmid unnamed1) position: , mismatch: 6, identity: 0.793

ataagctgattgctaaaaatgttctgatt	CRISPR spacer
atatgctgattgctaaaaatgatgggttg	Protospacer
*** ***************** *  * *

29. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

30. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

31. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

32. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

33. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 6, identity: 0.8

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
cgtgacgtcgagcttcatcgccttggccgc	Protospacer
*. **.****************** ** .*

34. spacer 3.29|1355792|30|NC_018178|PILER-CR matches to MN694493 (Marine virus AFVG_250M720, complete genome) position: , mismatch: 6, identity: 0.8

agaattgggcagacgaggtctat--aaatggt	CRISPR spacer
acaattgggcagacgaggtcaatcctattg--	Protospacer
* ****************** **   * **

35. spacer 3.29|1355792|30|NC_018178|PILER-CR matches to MN694469 (Marine virus AFVG_250M722, complete genome) position: , mismatch: 6, identity: 0.8

agaattgggcagacgaggtctat--aaatggt	CRISPR spacer
acaattgggcagacgaggtcaatcctattg--	Protospacer
* ****************** **   * **

36. spacer 3.29|1355792|30|NC_018178|PILER-CR matches to MN694809 (Marine virus AFVG_250M721, complete genome) position: , mismatch: 6, identity: 0.8

agaattgggcagacgaggtctat--aaatggt	CRISPR spacer
acaattgggcagacgaggtcaatcctattg--	Protospacer
* ****************** **   * **

37. spacer 3.32|1356020|29|NC_018178|PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gagagaaggggtgggcgactgtcaaggca	CRISPR spacer
tagagaaggggagggcgactgccaaaaga	Protospacer
 ********** *********.***.. *

38. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to NZ_CP032740 (Enterococcus casseliflavus strain EC-369 plasmid pEC369, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttttactgtatctttcataa	Protospacer
************.***** ****...** *

39. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to NC_004974 (Fusobacterium nucleatum plasmid pFN1, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatgtctttttctactaaatcttttaatg	Protospacer
**** ************.*****..** *.

40. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to NC_002002 (Fusobacterium nucleatum plasmid pPA52, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatgtctttttctactaaatcttttaatg	Protospacer
**** ************.*****..** *.

41. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to NZ_CP053470 (Fusobacterium nucleatum strain Fn12230 plasmid pFN1, complete sequence) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatgtctttttctactaaatcttttaatg	Protospacer
**** ************.*****..** *.

42. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to AP013393 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C72-MedDCM-OCT-S43-C21) position: , mismatch: 6, identity: 0.8

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttctactacatctatttttc	Protospacer
*****************. **** .* **

43. spacer 3.1|1355037|29|NC_018178|CRISPRCasFinder matches to NZ_CP043609 (Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gaattattgcgttttatgttattacgcca	CRISPR spacer
taattattgttttttatgttattaaagaa	Protospacer
 ********. ************* .  *

44. spacer 3.1|1355037|29|NC_018178|CRISPRCasFinder matches to NZ_CP036540 (Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence) position: , mismatch: 7, identity: 0.759

gaattattgcgttttatgttattacgcca	CRISPR spacer
taattattgttttttatgttattaaagaa	Protospacer
 ********. ************* .  *

45. spacer 3.1|1355037|29|NC_018178|CRISPRCasFinder matches to NZ_CP036547 (Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_1, complete sequence) position: , mismatch: 7, identity: 0.759

gaattattgcgttttatgttattacgcca	CRISPR spacer
taattattgttttttatgttattaaagaa	Protospacer
 ********. ************* .  *

46. spacer 3.4|1355262|30|NC_018178|CRISPRCasFinder matches to NC_017233 (Borreliella afzelii PKo plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.767

tatctctatcatgagttgcgcaaaagagga	CRISPR spacer
tatctctatcatgagttgtgcagaaactac	Protospacer
******************.***.**.  .

47. spacer 3.4|1355262|30|NC_018178|CRISPRCasFinder matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 7, identity: 0.767

tatctctatcatgagttgcgcaaaagagga	CRISPR spacer
tatctctatcatgagttacacaaacaatag	Protospacer
*****************.*.**** .* ..

48. spacer 3.5|1355338|29|NC_018178|CRISPRCasFinder matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 7, identity: 0.759

aaacggtaatataaaataaaggggagcta	CRISPR spacer
tgaaattaagataaaataaaggggagata	Protospacer
 .* . *** **************** **

49. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
caggatgtcgcgcttcatcgcatcggggaa	Protospacer
********** ********** *. * .*

50. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.767

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
caggatgtcgcgcttcatcgcatcggggaa	Protospacer
********** ********** *. * .*

51. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 7, identity: 0.767

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
gataaaacagcggaaacggcggaaacggcg	Protospacer
.  .*.************.******** **

52. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to NZ_CP026539 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence) position: , mismatch: 7, identity: 0.767

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
acacgcgcagcggaaacgacgaaaacgcca	Protospacer
*.* . .**************.*******.

53. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to NZ_CP028237 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

taatttctttttctactgaatctcctatta	CRISPR spacer
tattttctttttcaactgaatctgatgaaa	Protospacer
** ********** *********  *.  *

54. spacer 3.22|1355263|30|NC_018178|PILER-CR matches to NC_017233 (Borreliella afzelii PKo plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.767

tatctctatcatgagttgcgcaaaagagga	CRISPR spacer
tatctctatcatgagttgtgcagaaactac	Protospacer
******************.***.**.  .

55. spacer 3.22|1355263|30|NC_018178|PILER-CR matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 7, identity: 0.767

tatctctatcatgagttgcgcaaaagagga	CRISPR spacer
tatctctatcatgagttacacaaacaatag	Protospacer
*****************.*.**** .* ..

56. spacer 3.23|1355339|29|NC_018178|PILER-CR matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 7, identity: 0.759

aaacggtaatataaaataaaggggagcta	CRISPR spacer
tgaaattaagataaaataaaggggagata	Protospacer
 .* . *** **************** **

57. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
caggatgtcgcgcttcatcgcatcggggaa	Protospacer
********** ********** *. * .*

58. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.767

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
caggatgtcgcgcttcatcgcatcggggaa	Protospacer
********** ********** *. * .*

59. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 7, identity: 0.767

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
gataaaacagcggaaacggcggaaacggcg	Protospacer
.  .*.************.******** **

60. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to NZ_CP026539 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence) position: , mismatch: 7, identity: 0.767

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
acacgcgcagcggaaacgacgaaaacgcca	Protospacer
*.* . .**************.*******.

61. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to NZ_CP028237 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

taatttctttttctactgaatctcctatta	CRISPR spacer
tattttctttttcaactgaatctgatgaaa	Protospacer
** ********** *********  *.  *

62. spacer 3.9|1355639|30|NC_018178|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 8, identity: 0.733

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
ggtgacatcgagtttcatcgcctttgcatt	Protospacer
 . **..*****.*************** .

63. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to AP022646 (Bacillus wiedmannii PL1 plasmid pBwiPL1-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
aagaagacagaggaaacgacggagacgatc	Protospacer
* ..****** ************.*** .

64. spacer 3.13|1355943|30|NC_018178|CRISPRCasFinder matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 8, identity: 0.733

gactcccgcagaggcaaagcggagcgcatc	CRISPR spacer
cgatcccgcagcggcaaagctgagcgccct	Protospacer
 . ******** ******** ****** ..

65. spacer 3.13|1355943|30|NC_018178|CRISPRCasFinder matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 8, identity: 0.733

gactcccgcagaggcaaagcggagcgcatc	CRISPR spacer
cgatcccgcagcggcaaagctgagcgccct	Protospacer
 . ******** ******** ****** ..

66. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to AP013758 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttttactgaatcaacaggag	Protospacer
************.*********  * .  .

67. spacer 3.16|1356170|30|NC_018178|CRISPRCasFinder matches to AP014437 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 8, identity: 0.733

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttttactgaatcaacaggag	Protospacer
************.*********  * .  .

68. spacer 3.17|1356246|30|NC_018178|CRISPRCasFinder matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 8, identity: 0.733

ttagcgaaataaatggcagattatcctgat	CRISPR spacer
ttagcgaaagaaatggcagatgaaaagcgt	Protospacer
********* *********** *     .*

69. spacer 3.27|1355640|30|NC_018178|PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 8, identity: 0.733

caggatgtcgagcttcatcgcctttgcaac	CRISPR spacer
ggtgacatcgagtttcatcgcctttgcatt	Protospacer
 . **..*****.*************** .

70. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to AP022646 (Bacillus wiedmannii PL1 plasmid pBwiPL1-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
aagaagacagaggaaacgacggagacgatc	Protospacer
* ..****** ************.*** .

71. spacer 3.31|1355944|30|NC_018178|PILER-CR matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 8, identity: 0.733

gactcccgcagaggcaaagcggagcgcatc	CRISPR spacer
cgatcccgcagcggcaaagctgagcgccct	Protospacer
 . ******** ******** ****** ..

72. spacer 3.31|1355944|30|NC_018178|PILER-CR matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 8, identity: 0.733

gactcccgcagaggcaaagcggagcgcatc	CRISPR spacer
cgatcccgcagcggcaaagctgagcgccct	Protospacer
 . ******** ******** ****** ..

73. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to AP013758 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S40-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttttactgaatcaacaggag	Protospacer
************.*********  * .  .

74. spacer 3.34|1356171|30|NC_018178|PILER-CR matches to AP014437 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 8, identity: 0.733

taatttctttttctactgaatctcctatta	CRISPR spacer
taatttctttttttactgaatcaacaggag	Protospacer
************.*********  * .  .

75. spacer 3.35|1356247|30|NC_018178|PILER-CR matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 8, identity: 0.733

ttagcgaaataaatggcagattatcctgat	CRISPR spacer
ttagcgaaagaaatggcagatgaaaagcgt	Protospacer
********* *********** *     .*

76. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
cggtcttcagcgaaaacgacggcaacgccg	Protospacer
  .    *****.********* *******

77. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
cggttttcagcgaaaacgacggcaacgccg	Protospacer
  .    *****.********* *******

78. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
cggttttcagcgaaaacgacggcaacgccg	Protospacer
  .    *****.********* *******

79. spacer 3.12|1355867|30|NC_018178|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
ccgtcttcagcgaaaacgacggcaacgccg	Protospacer
 ..    *****.********* *******

80. spacer 3.18|1356322|30|NC_018178|CRISPRCasFinder matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 9, identity: 0.7

tattcgacgctgttaatgatggcttggtag	CRISPR spacer
ctaataacgctgttaatgtttgcttggtaa	Protospacer
.   ..************ * ********.

81. spacer 3.18|1356322|30|NC_018178|CRISPRCasFinder matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 9, identity: 0.7

tattcgacgctgttaatgatggcttggtag	CRISPR spacer
ctaataacgctgttaatgtttgcttggtaa	Protospacer
.   ..************ * ********.

82. spacer 3.18|1356322|30|NC_018178|CRISPRCasFinder matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.7

tattcgacgctgttaatgatggcttggtag	CRISPR spacer
ctctcgatgctggtaatgatggcttgccgc	Protospacer
. .****.**** ************* ..

83. spacer 3.19|1356398|29|NC_018178|CRISPRCasFinder matches to NZ_CP030851 (Runella sp. HYN0085 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.69

agctcttcaataggatttgcaaacggttt	CRISPR spacer
tcttcttcaataggattttcaaacatgaa	Protospacer
  .*************** *****.

84. spacer 3.19|1356398|29|NC_018178|CRISPRCasFinder matches to NZ_CP030855 (Runella sp. HYN0085 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.69

agctcttcaataggatttgcaaacggttt	CRISPR spacer
tcttcttcaataggattttcaaacatgaa	Protospacer
  .*************** *****.

85. spacer 3.20|1356473|30|NC_018178|CRISPRCasFinder matches to NZ_CP018333 (Acinetobacter baumannii strain A1296 isolate A1296 plasmid pA1296_1, complete sequence) position: , mismatch: 9, identity: 0.7

tttacccccataaatggaatgcaaacgtta	CRISPR spacer
tgggaattgataaatggaaagcaaacgtta	Protospacer
*  .  .. ********** **********

86. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
cggtcttcagcgaaaacgacggcaacgccg	Protospacer
  .    *****.********* *******

87. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
cggttttcagcgaaaacgacggcaacgccg	Protospacer
  .    *****.********* *******

88. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
cggttttcagcgaaaacgacggcaacgccg	Protospacer
  .    *****.********* *******

89. spacer 3.30|1355868|30|NC_018178|PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 9, identity: 0.7

atagagacagcggaaacgacggaaacgccg	CRISPR spacer
ccgtcttcagcgaaaacgacggcaacgccg	Protospacer
 ..    *****.********* *******

90. spacer 3.36|1356323|30|NC_018178|PILER-CR matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 9, identity: 0.7

tattcgacgctgttaatgatggcttggtag	CRISPR spacer
ctaataacgctgttaatgtttgcttggtaa	Protospacer
.   ..************ * ********.

91. spacer 3.36|1356323|30|NC_018178|PILER-CR matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 9, identity: 0.7

tattcgacgctgttaatgatggcttggtag	CRISPR spacer
ctaataacgctgttaatgtttgcttggtaa	Protospacer
.   ..************ * ********.

92. spacer 3.36|1356323|30|NC_018178|PILER-CR matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.7

tattcgacgctgttaatgatggcttggtag	CRISPR spacer
ctctcgatgctggtaatgatggcttgccgc	Protospacer
. .****.**** ************* ..

93. spacer 3.37|1356399|29|NC_018178|PILER-CR matches to NZ_CP030851 (Runella sp. HYN0085 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.69

agctcttcaataggatttgcaaacggttt	CRISPR spacer
tcttcttcaataggattttcaaacatgaa	Protospacer
  .*************** *****.

94. spacer 3.37|1356399|29|NC_018178|PILER-CR matches to NZ_CP030855 (Runella sp. HYN0085 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.69

agctcttcaataggatttgcaaacggttt	CRISPR spacer
tcttcttcaataggattttcaaacatgaa	Protospacer
  .*************** *****.

95. spacer 3.38|1356474|30|NC_018178|PILER-CR matches to NZ_CP018333 (Acinetobacter baumannii strain A1296 isolate A1296 plasmid pA1296_1, complete sequence) position: , mismatch: 9, identity: 0.7

tttacccccataaatggaatgcaaacgtta	CRISPR spacer
tgggaattgataaatggaaagcaaacgtta	Protospacer
*  .  .. ********** **********

96. spacer 4.12|2662628|38|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 9, identity: 0.763

atatatgagacattgcgtcggcggatattcttctccgg	CRISPR spacer
cggtatgcgccattgcgtcggcggatattctgatacgt	Protospacer
  .**** * *********************  * **

97. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 10, identity: 0.706

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagcagtcattag	Protospacer
** ****.**************** *..  ...*

98. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 10, identity: 0.706

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagcagtcattag	Protospacer
** ****.**************** *..  ...*

99. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to KX160204 (Lactococcus phage 38502, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagcagtcatgaa	Protospacer
** ****.**************** *..  . ..

100. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

101. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to MN689521 (Lactococcus phage CHPC836, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

102. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

103. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

104. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to AF323670 (Bacteriophage bIL309, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

105. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to MN689530 (Lactococcus phage CHPC974, partial genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

106. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to NC_002668 (Lactococcus prophage bIL309, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

107. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

108. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to DQ394806 (Lactococcus phage ul36.k1, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

109. spacer 4.14|2662762|34|NC_018178|PILER-CR,CRISPRCasFinder,CRT matches to NC_004066 (Lactococcus phage ul36, complete genome) position: , mismatch: 11, identity: 0.676

aacacatgctaatcatattagaagaaacgcccgg	CRISPR spacer
aaaacatactaatcatattagaagtagtcatgaa	Protospacer
** ****.**************** *..  . ..

110. spacer 2.16|930715|37|NC_018178|CRISPRCasFinder,CRT,PILER-CR matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 13, identity: 0.649

tttcttcaactaaaaataaatcattttcaatactata	CRISPR spacer
caccttcaattaaaaataaaccattttcaccttcggc	Protospacer
. .******.**********.******** . ...

111. spacer 2.16|930715|37|NC_018178|CRISPRCasFinder,CRT,PILER-CR matches to MT939486 (Erwinia phage pEa_SNUABM_12, complete genome) position: , mismatch: 13, identity: 0.649

tttcttcaactaaaaataaatcattttcaatactata	CRISPR spacer
caccttcaattaaaaataaaccattttcaccttcggc	Protospacer
. .******.**********.******** . ...

112. spacer 2.16|930715|37|NC_018178|CRISPRCasFinder,CRT,PILER-CR matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 13, identity: 0.649

tttcttcaactaaaaataaatcattttcaatactata	CRISPR spacer
caccttcaattaaaaataaaccattttcaccttcggc	Protospacer
. .******.**********.******** . ...

113. spacer 2.16|930715|37|NC_018178|CRISPRCasFinder,CRT,PILER-CR matches to MT939488 (Erwinia phage pEa_SNUABM_50, complete genome) position: , mismatch: 13, identity: 0.649

tttcttcaactaaaaataaatcattttcaatactata	CRISPR spacer
caccttcaattaaaaataaaccattttcaccttcggc	Protospacer
. .******.**********.******** . ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1800172 : 1810448

Bacillus_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014856221.1\|1800172_1800856_-	7-cyano-7-deazaguanine synthase QueC	E7DN66	Pneumococcus_phage	2.7e-31	34.8
WP_014856222.1\|1801038_1803504_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.2e-222	48.4
WP_014856223.1\|1803517_1804795_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-80	46.7
WP_014856224.1\|1804859_1806611_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.5e-52	29.3
WP_014856225.1\|1806623_1807634_+	hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	8.6e-42	33.2
WP_014856226.1\|1807633_1809424_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-53	30.2
WP_014856227.1\|1809437_1810448_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	3.5e-75	43.4

DBSCAN-SWA_2

2290593 : 2302506

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014856624.1\|2290593_2291226_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.0e-16	32.8
WP_014856625.1\|2291307_2294136_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.7e-292	56.3
WP_014856626.1\|2294132_2294597_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-33	49.7
WP_014856627.1\|2294609_2295827_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.1e-99	48.4
WP_014856628.1\|2295830_2296466_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.3e-31	37.4
WP_014856629.1\|2296458_2296908_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.4e-30	51.2
WP_081489499.1\|2297113_2297278_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_081489500.1\|2297346_2297586_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_014856630.1\|2298122_2298656_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_041356052.1\|2298694_2299345_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.2e-29	43.2
WP_014856632.1\|2299329_2300247_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_157867379.1\|2300307_2301408_+	peptide chain release factor 2	B5LLF2	Mycobacterium_phage	2.1e-09	41.2
WP_014856634.1\|2301408_2301738_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_014856635.1\|2301757_2302171_+	YjbQ family protein	NA	NA	NA	NA
WP_014856636.1\|2302179_2302506_+	MGMT family protein	M1PFU9	Streptococcus_phage	7.1e-06	35.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018178

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection