CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016012	Candidatus Arthromitus sp. SFB-rat-Yit, complete genome	1 crisprs	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	0	7	1	0

1. NC_016012

CRISPR-Cas detection and classification

Crispr_ID: NC_016012_1

• CRISPR_ID: NC_016012_1
• CRISPR_location: 670558-672035
• CRISPR_type: TypeI
• Repeat_type: I-C
• Spacer_info: 22 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NC_016012_1

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

spacers of NC_016012_1

>1.1|670590|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CCCCAATTATAACACCTGCCGTAATACCTATTACT
>1.2|670657|34|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TCTAATGTAATTATAAACATCTTTAGTGCTAACT
>1.3|670723|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CATATACGATATCCGGAAGAAAATTGCCTGAATAG
>1.4|670790|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
AATAAGTAGTGTTGCATCTAGCATGGGATACTC
>1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAG
>1.6|670922|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CATCTTATAATCTGCTATTTGCTTAGCTACATT
>1.7|670987|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
ATCATCGTTTATATTTGTTGATATTACCCCACTTG
>1.8|671054|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CCATGCCCTTGTGGTATTAGTTTTAGACTTGAG
>1.9|671119|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
AACCTTCACTTTTGTGTTTGTAATAAAACTTAT
>1.10|671184|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CGAAATTTACTGTTAAAACAAATGTTGGCAAAA
>1.11|671249|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTT
>1.12|671314|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TATATCAGTTGGTGGAGATGGAGAGTCTGGAGG
>1.13|671379|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TTTTGATAGTTTATTAACTACTTCAAAGTACTT
>1.14|671444|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
ATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATT
>1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TTTCATTTTTTTACTTTTACTTTTAAAATATAA
>1.16|671576|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
GTTAGCTCCATATTGGGACATTCCAACACCATGAC
>1.17|671643|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
ACTGGATCTACCTTAGATACAACCACAACCAAA
>1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CTTCATAAAATACACAATCTTCAATATAAATAT
>1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT
TCTAATATCATTTTTAACCTTCCTTTTTTAATTGA
>1.20|671840|34|NC_016012|PILER-CR,CRISPRCasFinder,CRT
ACGTGCATGATGAGATAATACTTGAAACGGATAA
>1.21|671906|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
AAAGAGTATGACGGCGTATTAAGTATACGTTTA
>1.22|671971|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT
CAGAGTGTCCTGGACAAATTTCAATATTTGATC

CRISPR arrays and Neighbor proteins around NC_016012_1

CRISPR arrays

The CRISPR arrays of NC_016012_1

>merge|NC_016012|1|670558-672035|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATCCCCAATTATAACACCTGCCGTAATACCTATTACTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTCTAATGTAATTATAAACATCTTTAGTGCTAACTGTCGCACCTCACGCAGGTGCGTGGATTGAAATCATATACGATATCCGGAAGAAAATTGCCTGAATAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATAATAAGTAGTGTTGCATCTAGCATGGGATACTCGTCGCACCTCACGCAGGTGCGTGGATTGAAATTGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATCATCTTATAATCTGCTATTTGCTTAGCTACATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATATCATCGTTTATATTTGTTGATATTACCCCACTTGGTCGCACCTCACGCAGGTGCGTGGATTGAAATCCATGCCCTTGTGGTATTAGTTTTAGACTTGAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATAACCTTCACTTTTGTGTTTGTAATAAAACTTATGTCGCACCTCACGCAGGTGCGTGGATTGAAATCGAAATTTACTGTTAAAACAAATGTTGGCAAAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATTACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTATATCAGTTGGTGGAGATGGAGAGTCTGGAGGGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTTTGATAGTTTATTAACTACTTCAAAGTACTTGTCGCACCTCACGCAGGTGCGTGGATTGAAATATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTTCATTTTTTTACTTTTACTTTTAAAATATAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATGTTAGCTCCATATTGGGACATTCCAACACCATGACGTCGCACCTCACGCAGGTGCGTGGATTGAAATACTGGATCTACCTTAGATACAACCACAACCAAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATCTTCATAAAATACACAATCTTCAATATAAATATGTCGCACCTCACGCAGGTGCGTGGATTGAAATTCTAATATCATTTTTAACCTTCCTTTTTTAATTGAGTCGCACCTCACGCAGGTGCGTGGATTGAAATACGTGCATGATGAGATAATACTTGAAACGGATAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATAAAGAGTATGACGGCGTATTAAGTATACGTTTAGTCGCACCTCACGCAGGTGCGTGGATTGAAATCAGAGTGTCCTGGACAAATTTCAATATTTGATCGTCGCACCTCACGCAGGTGCGTGGATTGAAGT

>NC_016012|1|1|670558-672035|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CCCCAATTATAACACCTGCCGTAATACCTATTACT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCTAATGTAATTATAAACATCTTTAGTGCTAACT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATATACGATATCCGGAAGAAAATTGCCTGAATAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATAAGTAGTGTTGCATCTAGCATGGGATACTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATCTTATAATCTGCTATTTGCTTAGCTACATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCATCGTTTATATTTGTTGATATTACCCCACTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CCATGCCCTTGTGGTATTAGTTTTAGACTTGAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AACCTTCACTTTTGTGTTTGTAATAAAACTTAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CGAAATTTACTGTTAAAACAAATGTTGGCAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TATATCAGTTGGTGGAGATGGAGAGTCTGGAGG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTTGATAGTTTATTAACTACTTCAAAGTACTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTCATTTTTTTACTTTTACTTTTAAAATATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTTAGCTCCATATTGGGACATTCCAACACCATGAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ACTGGATCTACCTTAGATACAACCACAACCAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTTCATAAAATACACAATCTTCAATATAAATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCTAATATCATTTTTAACCTTCCTTTTTTAATTGA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ACGTGCATGATGAGATAATACTTGAAACGGATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGAGTATGACGGCGTATTAAGTATACGTTTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGAGTGTCCTGGACAAATTTCAATATTTGATC
GTCGCACCTCACGCAGGTGCGTGGATTGAAGT

>NC_016012|1|1|670558-672035|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CCCCAATTATAACACCTGCCGTAATACCTATTACT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCTAATGTAATTATAAACATCTTTAGTGCTAACT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATATACGATATCCGGAAGAAAATTGCCTGAATAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATAAGTAGTGTTGCATCTAGCATGGGATACTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATCTTATAATCTGCTATTTGCTTAGCTACATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCATCGTTTATATTTGTTGATATTACCCCACTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CCATGCCCTTGTGGTATTAGTTTTAGACTTGAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AACCTTCACTTTTGTGTTTGTAATAAAACTTAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CGAAATTTACTGTTAAAACAAATGTTGGCAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TATATCAGTTGGTGGAGATGGAGAGTCTGGAGG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTTGATAGTTTATTAACTACTTCAAAGTACTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTCATTTTTTTACTTTTACTTTTAAAATATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTTAGCTCCATATTGGGACATTCCAACACCATGAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ACTGGATCTACCTTAGATACAACCACAACCAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTTCATAAAATACACAATCTTCAATATAAATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCTAATATCATTTTTAACCTTCCTTTTTTAATTGA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ACGTGCATGATGAGATAATACTTGAAACGGATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGAGTATGACGGCGTATTAAGTATACGTTTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGAGTGTCCTGGACAAATTTCAATATTTGATC
GTCGCACCTCACGCAGGTGCGTGGATTGAAGT

>NC_016012|1|1|670558-672035|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CCCCAATTATAACACCTGCCGTAATACCTATTACT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCTAATGTAATTATAAACATCTTTAGTGCTAACT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATATACGATATCCGGAAGAAAATTGCCTGAATAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATAAGTAGTGTTGCATCTAGCATGGGATACTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATCTTATAATCTGCTATTTGCTTAGCTACATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCATCGTTTATATTTGTTGATATTACCCCACTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CCATGCCCTTGTGGTATTAGTTTTAGACTTGAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AACCTTCACTTTTGTGTTTGTAATAAAACTTAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CGAAATTTACTGTTAAAACAAATGTTGGCAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TATATCAGTTGGTGGAGATGGAGAGTCTGGAGG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTTGATAGTTTATTAACTACTTCAAAGTACTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTCATTTTTTTACTTTTACTTTTAAAATATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTTAGCTCCATATTGGGACATTCCAACACCATGAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ACTGGATCTACCTTAGATACAACCACAACCAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTTCATAAAATACACAATCTTCAATATAAATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCTAATATCATTTTTAACCTTCCTTTTTTAATTGA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ACGTGCATGATGAGATAATACTTGAAACGGATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGAGTATGACGGCGTATTAAGTATACGTTTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGAGTGTCCTGGACAAATTTCAATATTTGATC
GTCGCACCTCACGCAGGTGCGTGGATTGAAGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_016012.1|WP_044035534.1|679617_680217_+|hypothetical-protein	unknown	unknown	unknown
NC_016012.1|WP_014094605.1|672044_672788_-|DUF1624-domain-containing-protein	unknown	unknown	gnl|CDD|377915
NC_016012.1|WP_014094597.1|662920_665152_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_016012.1|WP_014094599.1|665847_667686_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NC_016012.1|WP_014094608.1|674990_676172_+|restriction-endonuclease-subunit-S	unknown	unknown	gnl|CDD|341157
NC_016012.1|WP_014094614.1|683377_683806_+|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl|CDD|238129
NC_016012.1|WP_014094594.1|660947_661310_-|YraN-family-protein	unknown	unknown	gnl|CDD|237119
NC_016012.1|WP_102030028.1|669154_670084_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NC_016012.1|WP_102030039.1|662359_662803_+|hypothetical-protein	unknown	unknown	unknown
NC_016012.1|WP_014094595.1|661330_662092_-|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl|CDD|372824
NC_016012.1|WP_014094612.1|680748_681180_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|225064
NC_016012.1|WP_014094600.1|667688_668555_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NC_016012.1|WP_044035641.1|668568_669213_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|273040
NC_016012.1|WP_014094611.1|680256_680598_+|hypothetical-protein	unknown	unknown	unknown
NC_016012.1|WP_014094603.1|670096_670387_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_016012.1|WP_014094609.1|676190_679406_+|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl|CDD|223683
NC_016012.1|WP_014094606.1|672908_673226_+|DUF898-family-protein	unknown	unknown	gnl|CDD|368695
NC_016012.1|WP_014094607.1|673411_674998_+|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl|CDD|211578
NC_016012.1|WP_014094598.1|665170_665851_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl|CDD|187782
NC_016012.1|WP_014094613.1|681208_683236_+|BglG-family-transcription-antiterminator	unknown	unknown	gnl|CDD|226234

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_016012.1|WP_014094600.1|667688_668555_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	3.9e-114	375.3	0.0
NC_016012.1|WP_014094597.1|662920_665152_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	1.3e-69	229.9	6.1
NC_016012.1|WP_014094599.1|665847_667686_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	3.6e-113	373.7	0.3
NC_016012.1|WP_014094603.1|670096_670387_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	3e-27	89.4	1.4
NC_016012.1|WP_102030028.1|669154_670084_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1.3e-123	407.1	0.0
NC_016012.1|WP_044035641.1|668568_669213_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	5.2e-32	106.0	2.3
NC_016012.1|WP_014094598.1|665170_665851_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	1.1e-84	277.9	0.8

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_016012.1|WP_014094605.1|672044_672788_-|DUF1624-domain-containing-protein	gnl|CDD|377915	pfam07786, DUF1624, Protein of unknown function (DUF1624). These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.	1.26773e-36
NC_016012.1|WP_014094597.1|662920_665152_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.06701e-57
NC_016012.1|WP_014094599.1|665847_667686_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.12482e-160
NC_016012.1|WP_014094608.1|674990_676172_+|restriction-endonuclease-subunit-S	gnl|CDD|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	4.23359e-105
NC_016012.1|WP_014094594.1|660947_661310_-|YraN-family-protein	gnl|CDD|237119	PRK12497, PRK12497, YraN family protein.	5.38481e-27
NC_016012.1|WP_102030028.1|669154_670084_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	1.21347e-154
NC_016012.1|WP_044035641.1|668568_669213_+|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.25885e-27
NC_016012.1|WP_014094595.1|661330_662092_-|DNA/RNA-non-specific-endonuclease	gnl|CDD|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	9.46009e-32
NC_016012.1|WP_014094612.1|680748_681180_+|GNAT-family-N-acetyltransferase	gnl|CDD|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	3.08467e-37
NC_016012.1|WP_014094600.1|667688_668555_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.6614e-150
NC_016012.1|WP_014094614.1|683377_683806_+|PTS-sugar-transporter-subunit-IIA	gnl|CDD|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.86613e-31
NC_016012.1|WP_014094603.1|670096_670387_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.43369e-25
NC_016012.1|WP_014094609.1|676190_679406_+|type-I-restriction-endonuclease-subunit-R	gnl|CDD|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NC_016012.1|WP_014094606.1|672908_673226_+|DUF898-family-protein	gnl|CDD|368695	pfam05987, DUF898, Bacterial protein of unknown function (DUF898). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins.	6.08974e-09
NC_016012.1|WP_014094607.1|673411_674998_+|type-I-restriction-modification-system-subunit-M	gnl|CDD|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0
NC_016012.1|WP_014094598.1|665170_665851_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.53875e-103
NC_016012.1|WP_014094613.1|681208_683236_+|BglG-family-transcription-antiterminator	gnl|CDD|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.26947e-51

Protein sequences

>NC_016012.1|WP_014094603.1|670096_670387_+|CRISPR-associated-endonuclease-Cas2
MLILVTYDVKINFEDGEKRLRKVSKICENYGIRVQNSVFECVVDNMQFEMLKSEIGKVMDKEQDSVRYYNLGKSGRNKVIHVGSKNSIDVEDVIII
>NC_016012.1|WP_102030028.1|669154_670084_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MVVILKLKIILILIGYQGASTKLMAMCAEKNIGMSFCTPYGKFLCRVQGKVSGNILLRKKQYRISDDEYKSCLIAKNFIIGKLINYRNVLNRFKRDYADKFNKNVKKSIEYLSDTIKSVSKCEDLDNLRGLEGIGSKFYFEVFNELILINDESFRFDSRNRRPPLDRVNALLSFVYVLLSHDMASSLESVGLDPQAGFLHRDRPGRNGLALDMMEELRPYLCDRFVLKLINTKVIKHNDFIVKENGSVLMLEDARKSVLTAWQKRKKDIIKHPFLGEKIEIGLIPYVQSLLLARYLRGDLEEYPPYLMK
>NC_016012.1|WP_044035641.1|668568_669213_+|CRISPR-associated-protein-Cas4
MISGIQHFVFCPRQWALIHIEQIWKDNVKTFKGHKFHEKVDDPYVFEKRGERIISRSIPLISHELSLVGVSDCIEFYVRNDNLGVKIKGREGSYDVIPIEYKVGDIKDDESDISQLCVQAICLEEMFDTKIKKGYFYYGKLRRRVEVEFTEELRKNVKELAKKMKYYFDNGVTPKACYKKHCVSCSLYDICLPKLNRSYTKVKNYIDSYWISGS
>NC_016012.1|WP_014094600.1|667688_668555_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLSKRYEFVILFDVENGNPNGDPDSGNMPRIDPETGHGIVTDVCIKRKIRNYIEVVEGERQGFDIYVKNGVVLNEQHRKAYDAFELKSEKKKLPKDEKLAKELTGYMCKNFYDIRSFGAVMSNEVNCGQVRGPVQLNFGRSIDPIFSQDLTITRCAVTNLNDLEKGQTMGRKQIVPYGLYRMEGYVSAHLAERVTGFSEEDLNILWEAIINMFEYDRSASHGKMATRKLYVFEHETALGNAPSHKLFDLIKIEKKDKSRPSRNFNDYEIVIDEVPKGVNLTELIDGI
>NC_016012.1|WP_014094599.1|665847_667686_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKELVDCYDLMANSDKFQIADNNSNNENVSFKVTIDQDGIVSSVIDLREGSGSKRKPVLMTVPYKFSGRTGKSIVPYFLYDNAKYLFGCELDSKSLELNRFDEYVGASKKLHMEILEGSQSKYQLILEKFFDNRDQNIEIVKEKDTEALKSGFIVLCFKNDTKCIHEQQEIKKAFALYRQIKFKDVKDLKGDCLISGFTNVPIARTHTPIKGVLGSSASGAMIVSFNESAFESYGKKQSYNASVSNGNEFKYTTVLNKILSGNENKIYLSGNSIVFWSNKIGCKEEKIIHAFLRDDEDDNDEEGNGGIKYNQEGVDKIESVIKLIKQGKTVNIDKLKLDDSVNMYILGLYGTKSRIFIRFWFKNSLIDFVKLTNKHFEDTKLKRIRKINKKDLIHEEVGVKMSLILKTITPYGKSQNTPKALINTLFKSILTGVVYPISIYNKILERIKAEAGEDYAVNHTRVSFIKGYLKRYYRLNNFKDKEEEITVSLNKESKNVAYNLGRIFAILEKIQMDSNNGSTNIREKYLSSASSTPKSIFPNLLNLAQYHIAKINKENNRMFNYYDKIIGEILLNINEFPAVFSSDEQGMFILGYYHQREDIYTPKKDKEEN
>NC_016012.1|WP_014094598.1|665170_665851_+|type-I-C-CRISPR-associated-protein-Cas5
MGFTLRVWGDYACFTRPEMKVERVSYDVITPSSARAIFEAIHWKPAIRWVIDEINVIKPIKFQTILRNEVKSVISEQSIKNSMKNMEKQIYIDANEERAQRNSMILKDVEYVIKAHFEMTKHAGESDDEKKHYNIFLRRARKGECFTQPYFGCREFSCNFELLEDGEVPANINETKDLGWMLYDIDFVKKGDSYKGVKEYNPKFFRAEMIKGKIFIPQNLHKEVNK
>NC_016012.1|WP_014094597.1|662920_665152_+|CRISPR-associated-helicase/endonuclease-Cas3
MNFNEKLARRIEKSDGQIKYQKLIDHIHGVSEFSEEFISKFFLENSGKVLALLHDLGKYSDEFQERIRGKNIKVDHSTAGAIICDDLESELKDKHESVIYKIFKYIIIGHHSGLLNYGTDIDDAGTISSRLNKKEELCDFSDWKDEISIDEIKQINMSKEVYRFFKDNFSIQMLIRFLFSSLVDGDRLDAQRFSEGENSIINSKKLMSLDEMTEKFNDFMELKKLDGTNNPINSIRNIIFNDCVNKSNGSKGFYSLCVPTGGGKTLSSLAFALNHAKQNGHDRIIYSLPFTSIIEQNAKVYSDIFGEENVLEHHCNFNFSNEIGENEYSEKQLKYKLATENWDMPLIVTTNVQLFESMYSNKPSSVRKLHNIYNSIIILDEAQVIPNEYLKPCIRALEELVKNYSCTVLFCTATQPGFKKNGLIENFDVVEIIDDTYKLFEDLKRVEGKFIGKQSVEEICNKMNSHKQVLTIVNTKKHAKEIFESLSESEGNFHLSTNMYPNHRKEIIRIIKERLKNGEECRVISTQLIEAGVDVDFPVVFRSVSGIDSIVQAAGRCNREGKRKESTVYVFKPEDSLHLGMGYLKLTSQIGEGIIEDFKDFLSIDAIDKYFSELFIDTDHRQDKHNILKIINKRKKFELKYDFEKINDEFKFIDNVGTQIIVPIGEGEKLLNVLKYSEKGIKSVLRKLNGFSINIADNVLKELIEGGCAEQFSDDIFVLKNLSMYDSKIGFDKDNIENYDYII
>NC_016012.1|WP_102030039.1|662359_662803_+|hypothetical-protein
MTKDELHEAMTNQPIKILRTEHYVSSILNSKGVPQNYLTSVIQNNSGVRIKDVVIGFVAWDDKNLPIKIKSDDMFYIPSYLTKVNYNDINLEDGYSYGQNIGAAVENDEIVNLKSIVISYTDYEGNTWENDLMKDFENLYLNKKFVE
>NC_016012.1|WP_014094595.1|661330_662092_-|DNA/RNA-non-specific-endonuclease
MKFLYSIILVLFLFISFIFADWVLKPSTPNTNEITQNFNVNEIPEYNGKPYIEINNNVPFFSQSDLTTKSFEKYSDLDYLGRVGVAFANIGQDIMPTEKRKNISHIKPTGWKSVKYDIVEGKSLYNRCHLIGFQLSAENANEKNLMTGTRYFNVDGMLPFEDMVSDYVKKTDNHVLYRVTPIFEENNLIANGVQIEAKSVEDNGKGVMFNVFVYNVQPEITIDYKTGDSFLTEKDTKKLVSFSVIFLKICQQS
>NC_016012.1|WP_014094594.1|660947_661310_-|YraN-family-protein
MTTKEIGNLGENLAVKVLLSKNFKVINRNFKSKRGEIDIICLKNNVISFVEVKSMCMFKNNFISEPREQINNKKIFRIKCTANYFLTINNLHNNIYKFDLMEIKFWGNKRYSYNYIENIF
>NC_016012.1|WP_014094605.1|672044_672788_-|DUF1624-domain-containing-protein
MKNKRYFVLDGVRGFAVINMIIYHLIWDLVYILGFNIEWFSSDIAYIWQQFICCTFIFISGFCEPLGRKKFKRGITILFFGFLIEIVTMIVTPQSQVRFGILTLIGSSTILMIPLRKFLGKFPKTFGLILFAILFLLTKNINKGNIGFGNLNFINLPRNLYKNSLTTYLGFPMPNFYSSDYFPLMPWIFLYITGYFSYEIAKHHNLLRYLTPSKFKFLEWIGRHSLALYIIHQPIIYFSLTLLLSMK
>NC_016012.1|WP_014094606.1|672908_673226_+|DUF898-family-protein
MGPWYFEESEFDGGLAEFIGINILSFLLIVVTLGIGLPWVMCMRERYTINHTIVNGQRLKFIGKGGNLFLHWLRWILFTIITLGIYGFLIGIRFRQWKAKNIVFD
>NC_016012.1|WP_014094607.1|673411_674998_+|type-I-restriction-modification-system-subunit-M
MEVGIRNEQERDEIHRAIWAIADELRGAVDGWDFKNYILGMMFYRYISENLTNYINDGEVETNASFNFAECSDEEVEELREEIIDEKGFYIPPSELFENIRKRSNSDSEWARSSLNEKLDSVFRNIEQSSQGSESEGNFAGLFTDFDVNSNKLGSNVYKRNEKLVKLINGIANMNLASIKDQNIDAFGDAYEYLMGMYASNAGKSGGEFFTPAAVSELLTRLGTVGKKEVNKVYDPACGSGSLLLKSLKVLGRDAVCDGFFGQEINITTYNLCRINMFLHDVGFDKFNIECDDTLVSPKHWDNQPFDLIVSNPPYSIKWEGSDNVTLISDLRFSPAGVLAPKSKADLAFVMHIISWLSPSGTGAIVCFPGIMYRGGSEKKIREYLVNENYIDCIIQLPSNLFFGTSIATCIMIMKKNKKNNKTLFIDASNEYVKDTNNNKLNQENINRIVEIFTKREDIDHISRLVSYEEIKENDFNLSVSTYVEAEDTREKIDIVKLNSEIKEIVLREEMLRKEIDKIIEEIERDNE
>NC_016012.1|WP_014094608.1|674990_676172_+|restriction-endonuclease-subunit-S
MSKLDKLIKELCPDGVEYFKVETICNISRGRVMSKNYLRNNKGEYPVYSSQTENDGKLGEISTYDFDGEYITWTTDGAHAGSVFYRYGKFSITNICGMLEVKEKSKNLVRYIYYILKLYAKKYVNKGMGNPKLMSNVMGSIKIPIPPLEIQEEIVHILDSFTELTAELTAELTAELTARKKQYEYYRDKLFTFGDDVPRVKLKDVATIIRGGNFQKKDFRDEGFPCIHYGQIYTKYGMKVKNTISFVEGEIFEKSKKAQKNDIIMAVTSENLKDLCKCLVWLGDEDAAISGDAVIIKHNQNPSYLAYYFYTEMFFTQKRRLAHGTKVIRVTPSNLLDIEIPLPSLEEQERIVSILDKFDKLCNDLTEGLPAEIEARKKQYEYYRDKLLTFKEK
>NC_016012.1|WP_014094609.1|676190_679406_+|type-I-restriction-endonuclease-subunit-R
MSFYNVVAETNENTVVYEYIPKKNRSEHYQSEAELEKEFINMLCEQGYEYLSIKTENDLKNNLREKLEELNKYKFSNSEWNSFFKSVIANPNEHIVEKTQKIQEDNIQVLKCDDGSSKNITLIDKKNIHNNSVQVINQYVIGKKDGAKYNNRYDVTILVNGFPLVHVELKRRGVAIKEAFNQINRYQSDSFWAGCGLYEYIQIFVISNGTHTKYYSNTTRFNSVKNSKQSAYRNKNKTSNSFEFTSFWADAKNKTIADLIHFTETFFAKHTILNILTKYCVFTSENILLVMRPYQITATEAIINKIKMSNSCKTYGSTAGGGYIWHTTGSGKTLTSFKTAREASNLNFIDKVLFVVDRKDLDYQTMKEYDRFEKGSANSNVTTKILARQLEDENSKIIITTIQKLSTFVKKNPDHKVYKKHVVIIFDECHRSQFGEMHTSITKKFSKYYLFGFTGTPVFSVNALKKSEACTTEYIFGDKLHAYTIVNAINDKNVLGFKVDYVRTMNMQHEDEIDDEMVNDIDREKLMMHPERIKGVTKYILNKFDLKTYRGHSKYSYFHDLFTNISEIVSKDHGVVEGIKEKQHIIGFNSIFAVASVNMAKLYYDEFKRQMGEDPKNKLRIATIFSFGANEEEYDGDLGDENPENASSLDKSSRDFLEEAIEDYNKMFHTNYDTSSEKFQNYYKDVSLRMKNKELDLLIVVNMFLTGFDATTLNTLWVDKNLKMHGLIQAFSRTNRIFNSVKSHGNIVCFRNLQKCVDDALVVFGDDDAKRVIILNSFKDYYYGYTDKDGKRIPGYLEMVEKLKENFPVSDPNIIGEKNQEEFVLLFGAILRMRNLLISFDEFAGKELITERDFQDYLGKYQDIRDEWNIKRDSGEKMDVGDDVVFEVEFIKEIEINIDYILMLVKKYHDTNCKDKEVIITINKAINASPELRSKRQLIESFIKTVDVTDDIFNEWDKYVISKYEEDVENIVKSENLNLEATKIFLKNAFRNGEIKTYGTDINSFMPSMSRLDRSSGMSRAEKKQSIIYKLKELFERYSGILGFKELARELDQTSEEIKEPVLVGTGQSND
>NC_016012.1|WP_044035534.1|679617_680217_+|hypothetical-protein
MLRKILLSICVITSVGIATVSCATNNNKNSTSTVSTVQNDTTQVQEEPKKEEKKEMTSAELDEALNNQPVKIIKTEYISQDKKFLQPDLLSAVFQNDSGTDIKNAVLGFVAWDANNFPVKIKSKYDFTDGEYFKRVNCNDVNLVNGTSYGENSGLSIDNDNIAKFKPIVISYTDFDGNTWENPLLEEFKKMYVDKKLVE
>NC_016012.1|WP_014094611.1|680256_680598_+|hypothetical-protein
MKRSKLLLVSAVFSTLYLIYIFSYFLNGLASSSSGAEVVGVGIASFLVAPHVFMVLLGVLFNWIGWGMNKRWAALVSGILYSVSIFFMILYGIFVIIQVILCFVGYAKMGKKG
>NC_016012.1|WP_014094612.1|680748_681180_+|GNAT-family-N-acetyltransferase
MRLVVKYFEELTTIELYEILKSRMEIFVVEQKSTHQDLDDKDYQSLHIFFEDNRRVVGYVRAFFKEDNVVQMGRVLTLYHGKGIGRKLLKEGIEHIKNKMNPKEIYIDAQSYAVGFYELVGFEVCSDEFIRDGIPHIAMNLKL
>NC_016012.1|WP_014094613.1|681208_683236_+|BglG-family-transcription-antiterminator
MLVCNLNERCKKIMRLLLWENDYVSLQKIADITGVSRRSIYYDLCNINEWLEERGIKELEVERGKGILLSQEDKFKIKESLEEKISEKYYVFLPSERVEIIICYIVHSRKPVYINHIMDVCKVSRNTVFGDMKIAIQKLRKYELDLKYESKKGYEVVGDAVRKCALFFLYFNKLRALFNEGVLNFFDREKIYKNYECLNLLKNELKIEYMEGDLLSLAALMPVMHNYREKLHFSGLKKEEIFRIKEFQLVEKYFDELEENEKIYLCLHLLASRVSVATDKFFEDRADQSVYGITKALVTEFEKTACVNFEDKEELERALFVHIKTSMYRYKYGIQIGNPFGNDIIREYPNLFDITRKVSRYLEQIIGLPIPDSEVAYLSLHFGAYLKVCKYQGNKLRILIVCVNGISTGNMIKREVLKLLSDIEIVGVVSAVDIINAQDICDLIISTVNIKTIVPVIVVNPILMDEDREYILNHHMVHGVQKNKISNLLFNTIKKYVDKSQYKNLQKDIVQCLQGHSKNLDISVSEKENGILECLSLSKIMISDESLVLQDSVYLAGECLVENGSIEKRYLDVINFQTMYYGSYMFITDRIMLAHAKPEDGVNKMDISMAVFKNPILFREGKRAEIIFVLAAVDHERHLKILNDIFKIAEDKDIIERFVNANTKMEIFEILNEIL
>NC_016012.1|WP_014094614.1|683377_683806_+|PTS-sugar-transporter-subunit-IIA
MDLLDKKNVRLIDGASDWREAIRISVMPLEEGGYVEPRYKEAIISGVEKLGSYIIIAPSIALPHARPEDGVLKSQIAITLFKNEIKFDKENAVARLFLTLAAVDSSGHLNALMKISEILQDKEKVNNILKSDNVETLYGYFN

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016012_1	1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671773-671807	35	NC_008226	Clostridioides difficile 630 plasmid pCD630, complete sequence	3774-3808	5	0.857
NC_016012_1	1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671773-671807	35	NZ_CP016319	Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence	6676-6710	5	0.857
NC_016012_1	1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671773-671807	35	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	3780-3814	5	0.857
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP042835	Enterococcus faecium strain FA3 plasmid unnamed2	28420-28452	7	0.788
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NC_010283	Bacillus thuringiensis plasmid pFR55, complete sequence	463-495	7	0.788
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	257872-257904	7	0.788
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP046399	Bacillus sp. A260 plasmid unnamed11, complete sequence	151006-151038	8	0.758
NC_016012_1	1.8|671054|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671054-671086	33	MK886800	Escherichia phage EcNP1, complete genome	131671-131703	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	MN693984	Marine virus AFVG_250M279, complete genome	3179-3211	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	336961-336993	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP038597	Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.2, complete sequence	21372-21404	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	250718-250750	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP009647	Bacillus pseudomycoides strain BTZ plasmid pBTZ_4, complete sequence	11556-11588	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	MN693415	Marine virus AFVG_25M102, complete genome	17175-17207	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	MN694329	Marine virus AFVG_250M203, complete genome	9924-9956	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP014284	Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence	36103-36135	9	0.727
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP032609	Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence	123719-123751	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NZ_KY352353	Bacillus thuringiensis serovar israelensis strain 1.24 plasmid pT0124-4, complete sequence	88526-88558	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	LC128536	Bacillus thuringiensis serovar israelensis plasmid pBTI-6 DNA, complete sequence, strain: HD522	76844-76876	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	119230-119262	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NC_010076	Bacillus thuringiensis serovar israelensis plasmid pBtoxis, complete sequence	88527-88559	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NC_018510	Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence	38152-38184	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NZ_CP053973	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed4, complete sequence	118363-118395	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NZ_CP013279	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-4-128K, complete sequence	87476-87508	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NZ_CP045026	Bacillus thuringiensis strain JW-1 plasmid p4, complete sequence	88525-88557	9	0.727
NC_016012_1	1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671708-671740	33	NZ_CP039725	Bacillus thuringiensis strain BT-59 plasmid p4, complete sequence	40130-40162	9	0.727
NC_016012_1	1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671773-671807	35	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	3310-3344	9	0.743
NC_016012_1	1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	670855-670889	35	EF694687	Campylobacter phage CGC-2007 isolate Cj00-2544 cje0217 gene, partial cds; cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds	636-670	10	0.714
NC_016012_1	1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	670855-670889	35	EF694685	Campylobacter phage CGC-2007 isolate Cj00-2425 cje0217 gene, partial cds; cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds	620-654	10	0.714
NC_016012_1	1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	670855-670889	35	EF694684	Campylobacter phage CGC-2007 isolate Cj00-0949 cje0215 gene, partial cds; cje0216, cje0217, cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds	1406-1440	10	0.714
NC_016012_1	1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT	670855-670889	35	EF694686	Campylobacter phage CGC-2007 isolate Cj00-2538 cje0217 gene, partial cds; cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds	624-658	10	0.714
NC_016012_1	1.6|670922|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	670922-670954	33	NC_028940	Pectobacterium bacteriophage PM2, complete genome	59243-59275	10	0.697
NC_016012_1	1.8|671054|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671054-671086	33	LR746311	Shigella phage vB_SsoM_113 genome assembly, chromosome: 1	83259-83291	10	0.697
NC_016012_1	1.10|671184|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671184-671216	33	MN692977	Marine virus AFVG_117M37, complete genome	1938-1970	10	0.697
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	149613-149645	10	0.697
NC_016012_1	1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT	671511-671543	33	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	367287-367319	10	0.697

1. spacer 1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_008226 (Clostridioides difficile 630 plasmid pCD630, complete sequence) position: , mismatch: 5, identity: 0.857

tctaatatcatttttaaccttccttttt--taattga	CRISPR spacer
tttaatatcatttttaacgctccttttttataatt--	Protospacer
*.**************** .********  *****  

2. spacer 1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016319 (Clostridioides difficile strain 630 delta erm plasmid pCD630, complete sequence) position: , mismatch: 5, identity: 0.857

tctaatatcatttttaaccttccttttt--taattga	CRISPR spacer
tttaatatcatttttaacgctccttttttataatt--	Protospacer
*.**************** .********  *****  

3. spacer 1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 5, identity: 0.857

tctaatatcatttttaaccttccttttt--taattga	CRISPR spacer
tttaatatcatttttaacgctccttttttataatt--	Protospacer
*.**************** .********  *****  

4. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042835 (Enterococcus faecium strain FA3 plasmid unnamed2) position: , mismatch: 7, identity: 0.788

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
ttgaaaagttttactttgacttttaaaatagaa	Protospacer
**  *   ********* ************ **

5. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_010283 (Bacillus thuringiensis plasmid pFR55, complete sequence) position: , mismatch: 7, identity: 0.788

tttcatttttttacttttacttttaaaatataa-	CRISPR spacer
tttctttttttaacttttactttt-cgacatgat	Protospacer
**** ****** ************  .*.**.* 

6. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

tttcatttttttacttttacttttaaaatataa-	CRISPR spacer
tttctttttttaacttttactttt-cgacatgac	Protospacer
**** ****** ************  .*.**.* 

7. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046399 (Bacillus sp. A260 plasmid unnamed11, complete sequence) position: , mismatch: 8, identity: 0.758

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
tttctttttttaacttttacttttcgacaagac	Protospacer
**** ****** ************ .*  * * 

8. spacer 1.8|671054|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to MK886800 (Escherichia phage EcNP1, complete genome) position: , mismatch: 9, identity: 0.727

ccatgcccttgtggtattagttttagacttgag	CRISPR spacer
ggatcttctggtggtattagttttagacctgca	Protospacer
  ** ..** ******************.** .

9. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to MN693984 (Marine virus AFVG_250M279, complete genome) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
agttatttttttaattttacttttcaaattgtt	Protospacer
  *.********* ********** ****    

10. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
attcatttttttacatttatttttaactttctt	Protospacer
 ************* ****.******  * .  

11. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038597 (Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.2, complete sequence) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
agcaagcgttttatttttatttttaaaatataa	Protospacer
  . * . *****.*****.*************

12. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
tgaaattttttcacttttatttttaaaacaagt	Protospacer
*   *******.*******.********.* . 

13. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009647 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_4, complete sequence) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
tgaaattttttcacttttatttttaaaacaagt	Protospacer
*   *******.*******.********.* . 

14. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to MN693415 (Marine virus AFVG_25M102, complete genome) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa-	CRISPR spacer
attcctttttttactttttctttt-agctgtggt	Protospacer
 *** ************* ***** *. *.*.. 

15. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to MN694329 (Marine virus AFVG_250M203, complete genome) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
tttaatttttttatttttactttttttaagtgg	Protospacer
*** *********.**********   * .*..

16. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
tctgtacttttaactttttcttttaaaatattg	Protospacer
*.*   .**** ****** ************ .

17. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 9, identity: 0.727

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
tctgtacttttaactttttcttttaaaatattg	Protospacer
*.*   .**** ****** ************ .

18. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY352353 (Bacillus thuringiensis serovar israelensis strain 1.24 plasmid pT0124-4, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

19. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to LC128536 (Bacillus thuringiensis serovar israelensis plasmid pBTI-6 DNA, complete sequence, strain: HD522) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

20. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
tatcataaaatagacaatgttcaataatcctgt	Protospacer
. ********** ***** *******    *.*

21. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_010076 (Bacillus thuringiensis serovar israelensis plasmid pBtoxis, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

22. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_018510 (Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

23. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053973 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

24. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013279 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-4-128K, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

25. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045026 (Bacillus thuringiensis strain JW-1 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

26. spacer 1.18|671708|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039725 (Bacillus thuringiensis strain BT-59 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.727

cttcataaaatacacaatcttcaatataaatat	CRISPR spacer
cttgataaaatacacaagcttcaaagtgtcttc	Protospacer
*** ************* ****** .*.  * .

27. spacer 1.19|671773|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 9, identity: 0.743

tctaatatcatttttaaccttccttttttaattga	CRISPR spacer
tttaatatcatttataaccttactttttacttcag	Protospacer
*.*********** ******* ******   *...

28. spacer 1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to EF694687 (Campylobacter phage CGC-2007 isolate Cj00-2544 cje0217 gene, partial cds; cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds) position: , mismatch: 10, identity: 0.714

tgaaaataattttaaggaattgaaagtagggggag	CRISPR spacer
agattttaattttaaggagttgaaagtaaggtatt	Protospacer
 **   ************.*********.** .  

29. spacer 1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to EF694685 (Campylobacter phage CGC-2007 isolate Cj00-2425 cje0217 gene, partial cds; cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds) position: , mismatch: 10, identity: 0.714

tgaaaataattttaaggaattgaaagtagggggag	CRISPR spacer
agattttaattttaaggagttgaaagtaaggtatt	Protospacer
 **   ************.*********.** .  

30. spacer 1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to EF694684 (Campylobacter phage CGC-2007 isolate Cj00-0949 cje0215 gene, partial cds; cje0216, cje0217, cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds) position: , mismatch: 10, identity: 0.714

tgaaaataattttaaggaattgaaagtagggggag	CRISPR spacer
agattttaattttaaggagttgaaagtaaggtatt	Protospacer
 **   ************.*********.** .  

31. spacer 1.5|670855|35|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to EF694686 (Campylobacter phage CGC-2007 isolate Cj00-2538 cje0217 gene, partial cds; cje0218, cje0219, cje0220, cje0221, cje0222, cje0223, cje0224, cje0225, cje0226, cje0227, cje0228, cje0229, cje0230, and cje0231 genes, complete cds; and cje0232 gene, partial cds) position: , mismatch: 10, identity: 0.714

tgaaaataattttaaggaattgaaagtagggggag	CRISPR spacer
agattttaattttaaggagttgaaagtaaggtatt	Protospacer
 **   ************.*********.** .  

32. spacer 1.6|670922|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 10, identity: 0.697

catcttataatctgctatttgcttagctacatt	CRISPR spacer
tggatagtaatctgctaattgtttagctacacc	Protospacer
..  * .********** ***.*********..

33. spacer 1.8|671054|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to LR746311 (Shigella phage vB_SsoM_113 genome assembly, chromosome: 1) position: , mismatch: 10, identity: 0.697

ccatgcccttgtggtattagttttagacttgag	CRISPR spacer
ggctcttctggtggtattagttttagacctgca	Protospacer
   * ..** ******************.** .

34. spacer 1.10|671184|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to MN692977 (Marine virus AFVG_117M37, complete genome) position: , mismatch: 10, identity: 0.697

cgaaatttactgttaaaacaaatgttggcaaaa	CRISPR spacer
taaaattttttgttaaaacaaatgtttcatgat	Protospacer
..****** .****************    .* 

35. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 10, identity: 0.697

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
agatttttttttactttttattttaaaatctcc	Protospacer
   . *************  ********* *  

36. spacer 1.15|671511|33|NC_016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 10, identity: 0.697

tttcatttttttacttttacttttaaaatataa	CRISPR spacer
agatttttttttactttttattttaaaatctcc	Protospacer
   . *************  ********* *  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1455953 : 1462954	6	Bacillus_phage(33.33%)	protease,tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_016012|1455953:1462954|DBSCAN-SWA
CTTAAGTTGCACCCTCTATAATATCTTGAATAATTTCTATAACATTCCCTGATGAAATATAGGTTGATTCATAATCAGATAATTTAAATTTTTCATTTAATAAGCAGCTACTTATACCAATTATTTCTCCATTTGTATTGCATATAGGTCCACCTGTATTCAAATAATTAATATGAAAATTACTTTTTATAAACTTAACCTCTTTATCCGAATTATCTTTATATAAATTTATCCCACTAACAATTCCAGGATAAATAGAATACGAATTAACTTTTCCTAAGGAATTACCTATAGAAATAACATTTAAACCGTATGATACTTCCGATAAATCCTCCTTAATATTTCCCTTAATATAATCATTACCATTTATTTTTAATAAACATATGTCATACTCCGCATTATAACCAACAACCTTTGCTTCTTTTATAAGTCCAAGAGCTGTCGGAAATTTAACATATATTTTATAAGCATCCTTAATAGCACTAAAGTTTGTTAATATGTACCCATCTTCAGAATATATAACTCCCGTTAAATTATTCTGAACTAAATCTTTATCATTCTTCACATAAGCACTTACGCTAACTATAGATTTGTTGACCTTATTTATAACGCTTACTATATTGTAATTATACTCACTCATAGAGTAATTGTATCGTAGATCTTCATGCACCTTTGATAAAAGTGTATTATATATAAAAATACTTCCTGTAATTAAAATAAAAAAGGAAATTATTGCATTTATTAAAATAACAATCAACATCCTATTAATATTCAGCATTCTTTTTTGCTTAAATATTATGTGCACCTTATCTTTACATAAATTTTCTCTATTAAACACAACAAACCCTACCTAAAATAAAAATTTAGAAAATTTAATAACATTAATTCGATAAATTCGATAACTGAAGTGTAAAAATAAAACTAACTCCTTGCTCCTTAACCCTATTTTCAACCCATATATCTTCTCTAAACTGAGATATTATATTTCTTACTATAGATAATCCAAGTCCACTACTTCCTCTTACAGTTCTAGACTTATCATTTTTATAAAATCTTATCCAAATATTATTAAATTCATCTTCACTCAAAAGCTTAGCTGTATTAAAAATATTAACCATAGCCTTATTATTCTTTATTTTTGTAGAAATATTTATTCGTTTTTTATGATCACAATATTTAATGGCATTAGCAATTAAATTATTCAAAACCTGAACAAGTCTGTCTTCATCAGCAACAACATTTATAGAACTTTGCTCAAAAAATACCTCCATGATTATATCATTTTGTTCTATTTCTTGCTCAAAATTCTTAACCGTATACTTTATAAGAGAATTTAACTCTATTATTCTAGGTCTTAATGTAAATTTACCAGACTCTATAGCATTTAAATCTAATAAATCATTTACAAGTCTAGATAATCTTTTAACTTCATCATATACAATAGTTAATTTTTCAATATGATTTTCAGGAGATATTATACCATCTAAAATACCACTTAAAAATCCTATAATAGTTGTAAGAGGGGTTCTTAATTCATGAGATACATTAGACAAAAATTCTCTTCTATTTGAATCAATCTTATCTAACGATTCCGCCATATAATTAAAGGAATTTGATAGTTCCCCAATTTCATCATTAGAATTTATAGATACTCGCTTGCACAGATCTCCTGACGCAAATCTTTTAGCTGTATTATTTATAATTTCTATAGGTTTAACCAATATTTTTCTCGATAATAAATAATAAATAATGCCAATAATACTTATTAAAAAAACATACAGAACAATCATAGTGATCTTTATATCATGCAACTTAGAAGATATATATCCATCGTCCAACATCAAAGTAATAGAACCTTTGTAAATATTTGAATTATACAAAGGTTTAATAAATTTATAAACTTTTTTTTGAATATCCTGGTCATATGCATTCGTCTTAGTTACCACATCTTTTTCATCGATATTTATTTGTTTACCAAGTAAATTTTTATGAGCCGAATTAGAAACTAAATAAACATATCCTATAGTATCTGATATAATCAAATCAACCCCTGAATATTTATTAAGTTTTTCAACATAATCCCACAAATATTTACTATTTTCAGCGGTTGAATTATTTATATACTCAAAAGCTAAATCGGATATTATATTTGACTGAACCTCTAGATTATCCATAGCCGAATTAATTAAAGATGATTTATAAAACGAATAAACCAAAAATGAAAATAACATAAAAACAATAGTTGTAACTGACAAAAAATAAAATAATATTTTATTAATAATACTATGTTTTGACATTATTTCACCTCAAATTTATATCCTACACCCCAAACTGTTTCTATTTGCCAATTCATTCCACCATTCAACTTTTCTCTAAGCCTTTTTATATGTACATCAACTGTCCTAGAATCCCCTGGATAATCATATCCCCAAACCTCACAAAGTAAATTTTCTCTAGTGAAAACCTTATTTCTGTTTGAAGCCAAATAATGTAATAATTCAAATTCCTTAGGTGGCATTTTTATATCATTACCCTTAAAAATAACTGTATACGAATTTATATCTATAATCAAATCTGTAAATAAAAGACTCTCTCTTATATAATTATCTGTATTAAATCTTCGCATCACAGCCTTTATTCTAGCTAACAACTCTTTTGGTTCAAATGGTTTAACCATATAATCATCCGCTCCAAGTTCTAGAGCTAAACATTTATCAAATAACTCACCTTTAGCTGTAAGCATTATTATAGGAACACTCGAATCTCTTCTAATCCATTTTAAAACCTCGGTGCCATCTAAAATAGGCATCATAATATCAAGTATTACTAAATTAGGTTTATAATCTGGAAAAATTTCTTGGACTTCTCTACCATCACTGCAAGACCTTATATCATAACCAGAGTTACCTAAATACATTTTTAAAACTTCTAATATGTTAACATCATCATCTACTATTAGAACCTTAACTGCATTTCCGTCCATCTTAACACTCCCTTATTTTGTGAACATTTTTATTGTAATATATTATAAATTTTATTATTTAAAACTCTTCTAACCGTAAACATATTTAAATTTGGTTAAATTCTATACTCTAAAAATAAAAATGCAACTAATCCTTCCTATAGTTTCCCATTTTTTTAAAAAAATATACTAATGAGTTAAAATTTACCAAACAAAGGACTTAAACTTCTACAATCATGTATTCTTCTTATAGCTTCTGCAAATATTGGAGCAACTGATAACATTTTAAATTTAACATTTTGTTCACACAAAGAAGATTGTGAAATAGTATTTAAAAACACTAGTTCTTTTATATCTGAATTATTTATCCTCTCTATCGCATCACCTGAAAACACCCCATGCGTACAACATGCATAAACTTCTTTTGTTCCAAGTTCCATTAACTTATTTGCTGCGTTAACAATAGTTCCAGCCGTATCTATCATATCATCAACTAATATAGCTATCTTATTTTTAACTTCTCCAATTACAGTTAAAACTTCCGAAATATTTTGAGCAGGTCTTCTTTTATCTATAATAGCCATCGGTATATCTCCACTTAACTTTTCAGCAAATCCACGAGCCCTCTTAACACTACCAACATCCGGAGAAACTATAACTAATTCTCCACCAAATTCTTTTTTATCATAGTACTTCGTAAGTACTGGTAATCCTAATAAATGATCAACCGGTATATTGAAATATCCCTGTATTTGAGGTGCATGTAAATCCATCGTAAGAACTCTATGTGCCCCAGCTACAGTTATAATATCTGCTACCAATTTAGCTGTTATTGGGTCTCTCGATTTAGCTTTTCTATCTTGACGAGCATACCCATAATAAGGTATAACTGCCGTAATCCTTCCTGCAGATGCTCTCTTTAACGCATCTATTATTATTAAAAGTTCCATTAAACTGTCATTTACCGTCATATCTTCTGTTGCACAAACAGATTGAACAACAAACACATCTTCTCCTCTAATTGTCTCGCTTATATCTACATTAATTTCTCCATCACTAAAATTTATAACTTTAGATTTTACAAGAGATGTATTTAAACACGTTGCTATATTTTTTGATAATTCATGATTCGAATTTCCCGCAATTATTTTTATGTTATTTATCTGCTCTATCATTTAAAAGTTTCCTCCAATTACTTTAATTTATTCGTTACCCAATTATCCTTATTAATCTGTTTACACCTACCAATAGCTAAACTATTTGATTTAACTTTCTCAGTAACAGTAGTTCCAGCAGCTACGTAAGAATTTTTTTCAATAACTACAGGTGCAATCAAATTTGAATTACAACCAATAAAACAATCATCACCTATAATAGTTTTATTTTTATCCTTACCATTATAATTTACAGTTATAGTAGAGCATCCTAAATTACATCTTTCTCCAACTTCAGAATCTCCAACATATGATAAATGTGAAATCTTTGTACTGTTTCCAATTACAGAATTTTTAATTTCTACAAAATCTCCAACTCTAACTTTATTACCTATAAAAGACCCAGGTCTAATATAAGCAAAAGGTCCTATATTAGTATTATTTCCTATCTTGGAATCTAAAATTATAGAGGCATCTATTACACAATTTTCACCAATATAACTATTGAATATTTTTGTATTTGGATATATTTCACTACCTTCTTTTATCAAAGTCTTTCCAGTAAGATACACATTTGGATGTATAATTACATCGCCCTCTATTTTAACATCAATATCTATGTAAGTAGAATTACTATCTATAATTGTAACTCCTTCTTCCATATGTTTATCATTTATCTGTAATCTTAAAATATTATTGGCAATTGAGAGTTGTTTTCTTGTATCAACACCCACAAGCTCATTTTCATCTATGCTAATACTTCCTACTTTTTTACCTTCATTGCTTAATATTTCAATTATATCGGTTAAATAAAACTCCCTTTGATTATTATCTTTATTAATTTTTCGTATACCACTTTTTAAGTCATCTATTTTAAAACAATATATGCTTGAATTAACTTCATTTATCATAAGTTCTAATTCTGAACAATCCCTAGCTTCTTTAATGCATTTAATCTTATTTCCTTTTCTAATTATTCTTCCATATCTTAACGGATTACTTACTTTAGATGTAATAATTGTAGATGAATTACCTTCGCTTACATGCTTTTCTATAAGTTTTTTGATGTTTTCTTCTTTTATAAGTGGCATATCGCAGGCAATAACTAAAATATTACCTAATTTGTTTCCCCAAAATTCTTCAGCACACAATACAGCATCAGCAGTCCCTATTTGATTTTCTTGCATAGAATAAGATACATTTTTATTGGTTATGGAATTGATTAAACTCTCCCTATATTCCCCAACAACTACGTTAATATCTTCTATTCCACACAACTCTAATTTACCTATTATTATGTTTATCATCTCTTTACCGCAAATTTTATGAGTACCTTTATGACGCCTAGACTTCATTCTGCTTCCTTTACCTGCCGCAAGAATTATAGCACAAATATTCATAATAAACACCTCAAAGTTAATACTATTTCTATTATAAATTAACATTGTTAATATTTGCAATAATATAAAAAAAGATAGTTAAATTTAACTATCTTTCTTAAAATTCTGCATTCTGGGGTGTTCTTGGAAATGGTATAACATCTCTTATATTGCTCATTCCAGTTAAATACATAATAAGCCTCTCAAGTCCAAGACCAAATCCAGAATGCACAGTTTCTCCATATTTCCTTAAATCCATATACCACCAATAATCTTCTTCATTAAGATTAAATTCCTGTATCCTATTTTTTAAAATATCATATCTTTCTTCTCTTTGACTACCTCCAATTATTTCACCAATTCCAGGTACTAAACAATCAAAAGAAGCTACAGTTTTATCATCATCATTTAATCTCATATAAAAAGCCTTTATATTTTTAGGGTAATTATATAGGAATATAGGTTTGTTGAAGTGCTCTTCTGTCAAATATCTCTCATGTTCTGATTGAAGATCAATTCCCCATTCAACTTTATATTCAAATTTCTTACCGCTTTTCAATAATATATCTATTGCATCATTATAAGTAACTCTATTAAATTCAGAATCAATAAGAGCAGTTAACTTACTTATCAATCCCCTCTCTACAAACTTATCTAAAAACTCAATTTCATCTTTACATTTTTCAAGAACATATTTAATTGTATATTTCAACATATTTTCAGCTAAATCCATAGCTTCAAACATATTAACAAATGCAGCTTCAGGTTCAATCATCCAAAACTCTGCAGCATGTCTTGATGTATTTGAGTTCTCAGCTCTAAAAGTTGGCCCAAAAGTATATACTTTACCTAAAGCAAGAGCCATAATCTCTCCCTCTAACTGTCCACTAACTGTTAGATTAGACATTTTTCCAAAAAAATCTTTAGAATACTCTACATCTCCAACTTCATTTTTAGGTATATTTTTAAAATCAAGCGTTGTTACTTTAAACATTTCTCCAGCACCTTCACAATCACTTGCTGTTATAATTGGAGAATTTATATATTCATATCCATTTTCTCTAAAAAATGAATGTATTGCATAAGATGCAACACTCCTTATTCTAAATACAGATAAAAATGTATACGTCCTCGGTCTTAAATGTCCTATACTTCTTAAATATTCAAAACTATGCCTTTTTTTCTGAAGAGGATAATCTTGATTTGAATTTCCTTCTAAAAATACATATGTAGCTTTTATTTCAAAAGGTTGTTTGTTTTCTGGTGTTAATATAACTACCCCTTCAATTTTAAGAGTTGATGAAATTATATACGAGCATATTTTTTCATAATTTTCCAAATTATTTTCTACGACAATCTGCACATTCTTAAAAGAACTCCCATCATTCAATTCCAAAAAACCAATATTATTATTACTTCTTATACTTCTAAGCCATCCATAAATTGTAACATTTTTACCATTATATTTCTCATAATTTTTATATAATTCACTTACATTAATTTTCAA

Protein sequences of DBSCAN-SWA_1

>NC_016012|1455953:1462954|1461565_1462954_-|WP_014095306.1|tRNA|DBSCAN-SWA
MKINVSELYKNYEKYNGKNVTIYGWLRSIRSNNNIGFLELNDGSSFKNVQIVVENNLENYEKICSYIISSTLKIEGVVILTPENKQPFEIKATYVFLEGNSNQDYPLQKKRHSFEYLRSIGHLRPRTYTFLSVFRIRSVASYAIHSFFRENGYEYINSPIITASDCEGAGEMFKVTTLDFKNIPKNEVGDVEYSKDFFGKMSNLTVSGQLEGEIMALALGKVYTFGPTFRAENSNTSRHAAEFWMIEPEAAFVNMFEAMDLAENMLKYTIKYVLEKCKDEIEFLDKFVERGLISKLTALIDSEFNRVTYNDAIDILLKSGKKFEYKVEWGIDLQSEHERYLTEEHFNKPIFLYNYPKNIKAFYMRLNDDDKTVASFDCLVPGIGEIIGGSQREERYDILKNRIQEFNLNEEDYWWYMDLRKYGETVHSGFGLGLERLIMYLTGMSNIRDVIPFPRTPQNAEF
>NC_016012|1455953:1462954|1455953_1456790_-|WP_044035602.1|protease|DBSCAN-SWA
MFNRENLCKDKVHIIFKQKRMLNINRMLIVILINAIISFFILITGSIFIYNTLLSKVHEDLRYNYSMSEYNYNIVSVINKVNKSIVSVSAYVKNDKDLVQNNLTGVIYSEDGYILTNFSAIKDAYKIYVKFPTALGLIKEAKVVGYNAEYDICLLKINGNDYIKGNIKEDLSEVSYGLNVISIGNSLGKVNSYSIYPGIVSGINLYKDNSDKEVKFIKSNFHINYLNTGGPICNTNGEIIGISSCLLNEKFKLSDYESTYISSGNVIEIIQDIIEGAT
>NC_016012|1455953:1462954|1460106_1461468_-|WP_014095305.1|DBSCAN-SWA
MNICAIILAAGKGSRMKSRRHKGTHKICGKEMINIIIGKLELCGIEDINVVVGEYRESLINSITNKNVSYSMQENQIGTADAVLCAEEFWGNKLGNILVIACDMPLIKEENIKKLIEKHVSEGNSSTIITSKVSNPLRYGRIIRKGNKIKCIKEARDCSELELMINEVNSSIYCFKIDDLKSGIRKINKDNNQREFYLTDIIEILSNEGKKVGSISIDENELVGVDTRKQLSIANNILRLQINDKHMEEGVTIIDSNSTYIDIDVKIEGDVIIHPNVYLTGKTLIKEGSEIYPNTKIFNSYIGENCVIDASIILDSKIGNNTNIGPFAYIRPGSFIGNKVRVGDFVEIKNSVIGNSTKISHLSYVGDSEVGERCNLGCSTITVNYNGKDKNKTIIGDDCFIGCNSNLIAPVVIEKNSYVAAGTTVTEKVKSNSLAIGRCKQINKDNWVTNKLK
>NC_016012|1455953:1462954|1458248_1458935_-|WP_014095303.1|DBSCAN-SWA
MDGNAVKVLIVDDDVNILEVLKMYLGNSGYDIRSCSDGREVQEIFPDYKPNLVILDIMMPILDGTEVLKWIRRDSSVPIIMLTAKGELFDKCLALELGADDYMVKPFEPKELLARIKAVMRRFNTDNYIRESLLFTDLIIDINSYTVIFKGNDIKMPPKEFELLHYLASNRNKVFTRENLLCEVWGYDYPGDSRTVDVHIKRLREKLNGGMNWQIETVWGVGYKFEVK
>NC_016012|1455953:1462954|1459111_1460089_-|WP_014095304.1|DBSCAN-SWA
MIEQINNIKIIAGNSNHELSKNIATCLNTSLVKSKVINFSDGEINVDISETIRGEDVFVVQSVCATEDMTVNDSLMELLIIIDALKRASAGRITAVIPYYGYARQDRKAKSRDPITAKLVADIITVAGAHRVLTMDLHAPQIQGYFNIPVDHLLGLPVLTKYYDKKEFGGELVIVSPDVGSVKRARGFAEKLSGDIPMAIIDKRRPAQNISEVLTVIGEVKNKIAILVDDMIDTAGTIVNAANKLMELGTKEVYACCTHGVFSGDAIERINNSDIKELVFLNTISQSSLCEQNVKFKMLSVAPIFAEAIRRIHDCRSLSPLFGKF
>NC_016012|1455953:1462954|1456833_1458249_-|WP_014095302.1|DBSCAN-SWA
MSKHSIINKILFYFLSVTTIVFMLFSFLVYSFYKSSLINSAMDNLEVQSNIISDLAFEYINNSTAENSKYLWDYVEKLNKYSGVDLIISDTIGYVYLVSNSAHKNLLGKQINIDEKDVVTKTNAYDQDIQKKVYKFIKPLYNSNIYKGSITLMLDDGYISSKLHDIKITMIVLYVFLISIIGIIYYLLSRKILVKPIEIINNTAKRFASGDLCKRVSINSNDEIGELSNSFNYMAESLDKIDSNRREFLSNVSHELRTPLTTIIGFLSGILDGIISPENHIEKLTIVYDEVKRLSRLVNDLLDLNAIESGKFTLRPRIIELNSLIKYTVKNFEQEIEQNDIIMEVFFEQSSINVVADEDRLVQVLNNLIANAIKYCDHKKRINISTKIKNNKAMVNIFNTAKLLSEDEFNNIWIRFYKNDKSRTVRGSSGLGLSIVRNIISQFREDIWVENRVKEQGVSFIFTLQLSNLSN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044035602.1|1455953_1456790_-|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-07	28.5
WP_014095302.1|1456833_1458249_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.7e-27	32.4
WP_014095303.1|1458248_1458935_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.6e-45	40.5
WP_014095304.1|1459111_1460089_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	7.0e-49	36.6
WP_014095305.1|1460106_1461468_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A1V0SFS6	Hokovirus	5.6e-28	36.9
WP_014095306.1|1461565_1462954_-|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.7e-88	37.6