CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016784	Bacillus velezensis CAU B946, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

589275 : 646635

uncultured_Caudovirales_phage(36.96%)

tRNA,terminase,tail,integrase,holin,head,capsid,protease,portal

attL 599466:599484|attR 640288:640306

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003155999.1\|589275_589752_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_003155996.1\|589732_590422_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_014304466.1\|590432_590888_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_014304467.1\|590880_591921_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.1e-63	42.3
WP_014304468.1\|592144_594073_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	7.9e-60	32.6
WP_003155986.1\|594212_594725_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_003155984.1\|594721_595369_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_003155981.1\|595387_595558_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_088005343.1\|595564_596323_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_003155975.1\|596363_596555_-	YdiK family protein	NA	NA	NA	NA
WP_003155972.1\|596551_597286_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013351185.1\|597522_597807_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	3.7e-19	51.6
WP_003155941.1\|597848_599483_+	chaperonin GroEL	A0A219YK78	uncultured_virus	3.7e-159	57.5
599466:599484	attL	NA	NA	NA	NA
WP_014304470.1\|599561_600773_-\|integrase	site-specific integrase	S6C485	Thermus_phage	2.6e-77	41.5
WP_041481826.1\|600784_601258_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	1.3e-21	35.1
WP_014304471.1\|601440_602001_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.1e-29	46.7
WP_014304472.1\|602290_602671_-	helix-turn-helix domain-containing protein	A8ATJ9	Listeria_phage	7.8e-12	41.2
WP_041481827.1\|602840_603083_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014304473.1\|603095_603401_+	hypothetical protein	NA	NA	NA	NA
WP_014304474.1\|603397_604126_+	Rha family transcriptional regulator	A0A2H4J4N4	uncultured_Caudovirales_phage	3.1e-86	63.3
WP_003155916.1\|604183_604756_+	helix-turn-helix transcriptional regulator	A0A2H4J884	uncultured_Caudovirales_phage	1.3e-58	55.0
WP_014304475.1\|604752_605010_+	hypothetical protein	A0A2H4J4M9	uncultured_Caudovirales_phage	3.0e-07	38.0
WP_014304476.1\|605006_605204_+	hypothetical protein	NA	NA	NA	NA
WP_041481828.1\|605306_605657_+	hypothetical protein	NA	NA	NA	NA
WP_014304477.1\|605656_605845_+	hypothetical protein	NA	NA	NA	NA
WP_014304478.1\|605844_606795_+	YqaJ viral recombinase family protein	A0A2H4JA52	uncultured_Caudovirales_phage	2.3e-129	70.5
WP_014304479.1\|606797_607640_+	recombinase RecT	A0A2H4JCY8	uncultured_Caudovirales_phage	4.0e-125	83.0
WP_014304480.1\|607804_608521_+	DnaD domain protein	A0A2H4J6G9	uncultured_Caudovirales_phage	2.7e-42	45.4
WP_014304481.1\|608405_609353_+	ATP-binding protein	A6XMI1	Bacillus_virus	1.8e-57	51.7
WP_014304482.1\|609349_609493_+	hypothetical protein	NA	NA	NA	NA
WP_014304483.1\|609638_610100_+	hypothetical protein	K4I239	Lactobacillus_phage	8.8e-18	38.8
WP_014304484.1\|610086_610545_+	DUF1064 domain-containing protein	A0A2H4J891	uncultured_Caudovirales_phage	8.6e-58	78.0
WP_003155895.1\|610664_610817_+	hypothetical protein	A0A2H4J4N7	uncultured_Caudovirales_phage	4.2e-09	68.3
WP_003155894.1\|610898_611102_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	3.4e-22	75.4
WP_014304485.1\|611133_611499_+	hypothetical protein	NA	NA	NA	NA
WP_014304486.1\|611495_611750_+	hypothetical protein	A0A2H4JA61	uncultured_Caudovirales_phage	8.5e-07	39.8
WP_014304487.1\|611754_612168_+	hypothetical protein	A0A1P8CWZ8	Bacillus_phage	5.2e-70	94.7
WP_041481831.1\|612277_612601_+	hypothetical protein	NA	NA	NA	NA
WP_041481832.1\|612642_612915_+	hypothetical protein	F8WQ59	Bacillus_phage	2.8e-16	46.7
WP_051003490.1\|612911_613400_+	hypothetical protein	A0A2I6UHP7	Bacillus_phage	4.2e-18	39.8
WP_041481834.1\|613605_613794_+	hypothetical protein	NA	NA	NA	NA
WP_041481835.1\|613790_613973_+	hypothetical protein	NA	NA	NA	NA
WP_014304490.1\|613988_614423_+	hypothetical protein	A0A2H4J8A0	uncultured_Caudovirales_phage	2.6e-48	69.3
WP_014304491.1\|614433_614616_+	hypothetical protein	NA	NA	NA	NA
WP_014304493.1\|614854_615370_+	sigma-70 family RNA polymerase sigma factor	A0A1L2JY33	Aeribacillus_phage	4.0e-27	43.2
WP_014304494.1\|615473_615611_+	hypothetical protein	NA	NA	NA	NA
WP_003155868.1\|615907_616120_+	helix-turn-helix domain-containing protein	A0A1Z1LZP5	Bacillus_phage	9.6e-12	52.9
WP_041481836.1\|616252_616480_+	hypothetical protein	NA	NA	NA	NA
WP_014304495.1\|616644_617406_+	hypothetical protein	A0A2H4J4R0	uncultured_Caudovirales_phage	1.5e-67	57.3
WP_014304496.1\|617392_618601_+\|terminase	PBSX family phage terminase large subunit	A0A2H4J8B0	uncultured_Caudovirales_phage	4.4e-210	87.0
WP_014304497.1\|618606_620010_+\|portal	phage portal protein	A0A2H4J4Q7	uncultured_Caudovirales_phage	1.8e-154	59.8
WP_014304498.1\|619996_620920_+\|head	head protein	A0A1Q1PVS0	Bacillus_phage	3.0e-81	51.8
WP_014304499.1\|620923_621205_+	hypothetical protein	NA	NA	NA	NA
WP_014304500.1\|621295_621877_+	DUF4355 domain-containing protein	A0A2H4J4P4	uncultured_Caudovirales_phage	1.8e-52	53.7
WP_014304501.1\|621891_622809_+\|capsid	phage major capsid protein	A0A2H4JCG0	uncultured_Caudovirales_phage	9.0e-115	68.9
WP_003155858.1\|622813_623149_+	hypothetical protein	NA	NA	NA	NA
WP_014304502.1\|623150_623423_+	hypothetical protein	NA	NA	NA	NA
WP_014304503.1\|623431_623740_+\|head,tail	phage head-tail connector protein	R4IFL8	Staphylococcus_phage	4.8e-12	39.6
WP_014304504.1\|623736_624075_+\|head	phage head closure protein	NA	NA	NA	NA
WP_014304505.1\|624067_624484_+	HK97 gp10 family phage protein	O48447	Bacillus_phage	1.5e-32	55.0
WP_014304506.1\|624502_624901_+	DUF3168 domain-containing protein	W8EK61	Geobacillus_phage	8.4e-25	43.8
WP_014304507.1\|624914_625427_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_014304508.1\|625368_625683_+	fibronectin type III domain-containing protein	Q0PDK9	Bacillus_phage	4.6e-26	77.8
WP_077199889.1\|625696_625939_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_014304509.1\|625995_626502_+	hypothetical protein	I6T7F0	Staphylococcus_virus	5.1e-11	32.7
WP_041481949.1\|626549_626858_+	hypothetical protein	NA	NA	NA	NA
WP_014304511.1\|626862_631938_+	hypothetical protein	M9NRJ5	Staphylococcus_phage	6.1e-35	26.0
WP_014304512.1\|631934_632699_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_014304513.1\|632711_635906_+\|tail	phage tail protein	Q5YA57	Bacillus_phage	1.7e-131	46.1
WP_014304514.1\|635917_636205_+	hypothetical protein	NA	NA	NA	NA
WP_014304515.1\|636223_636391_+	XkdX family protein	NA	NA	NA	NA
WP_014304516.1\|636404_636626_+	hypothetical protein	NA	NA	NA	NA
WP_014304517.1\|636660_637083_+\|holin	phage holin family protein	D6R405	Bacillus_phage	5.5e-59	88.0
WP_014304518.1\|637129_638101_+	N-acetylmuramoyl-L-alanine amidase	A0A218KC88	Bacillus_phage	7.0e-65	68.5
WP_014304519.1\|638425_639115_+	hypothetical protein	Q0H269	Geobacillus_phage	2.1e-60	52.2
WP_014304520.1\|639126_639876_+	DUF4065 domain-containing protein	Q0H268	Geobacillus_phage	1.2e-93	65.3
WP_014304521.1\|640536_640896_-	hypothetical protein	NA	NA	NA	NA
640288:640306	attR	NA	NA	NA	NA
WP_014304522.1\|640917_642810_-	EndoU domain-containing protein	A0A1P8CWI7	Bacillus_phage	3.9e-128	58.0
WP_014304523.1\|643227_643797_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_014304524.1\|643817_645410_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	5.2e-118	49.6
WP_041481839.1\|645399_646635_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.6e-18	32.1

DBSCAN-SWA_2

685021 : 694912

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003155764.1\|685021_686314_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.5e-19	27.3
WP_003155762.1\|686389_687109_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	5.2e-49	45.2
WP_003155758.1\|687108_687363_+	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	4.7e-05	33.3
WP_014304545.1\|687359_688043_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003155755.1\|688026_690255_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.2e-158	40.4
WP_003155754.1\|690230_691661_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.6e-54	32.9
WP_003155753.1\|691752_692793_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.4e-63	41.1
WP_014304546.1\|692789_693377_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.7e-27	39.3
WP_014304547.1\|693373_694912_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.9e-78	50.8

DBSCAN-SWA_3

1250596 : 1286171

Bacillus_phage(36.67%)

terminase,tail,holin,plate,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003154898.1\|1250596_1251955_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-14	26.6
WP_014304836.1\|1252416_1252608_+	hypothetical protein	NA	NA	NA	NA
WP_014304837.1\|1252683_1253448_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014304838.1\|1253596_1254064_-	DinB family protein	NA	NA	NA	NA
WP_087920760.1\|1254268_1255405_+	S9 family peptidase	A0A1P8CWN8	Bacillus_phage	1.3e-94	47.9
WP_003154881.1\|1255394_1255529_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA
WP_014304839.1\|1255671_1256625_+	N-acetylmuramoyl-L-alanine amidase	A0A218KC88	Bacillus_phage	1.4e-62	68.7
WP_003154878.1\|1256662_1257040_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	1.1e-15	40.6
WP_014304840.1\|1257149_1257755_+	poly-gamma-glutamate hydrolase family protein	A0A0Y0AJU6	Bacillus_phage	1.3e-40	46.8
WP_162885922.1\|1257744_1257894_+	hypothetical protein	NA	NA	NA	NA
WP_003154873.1\|1257909_1258500_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	3.0e-39	51.7
WP_003154871.1\|1258648_1258987_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	8.4e-18	45.8
WP_003154869.1\|1259178_1259358_+	hypothetical protein	NA	NA	NA	NA
WP_014304841.1\|1259347_1260175_+\|portal	phage portal protein	S6BFM4	Thermus_phage	1.7e-19	49.0
WP_014304842.1\|1260074_1260875_+	ATP-binding protein	A6XMI1	Bacillus_virus	8.0e-59	45.1
WP_014304843.1\|1260874_1261042_+	hypothetical protein	NA	NA	NA	NA
WP_014304844.1\|1261139_1261469_+	hypothetical protein	NA	NA	NA	NA
WP_003154859.1\|1261470_1261674_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	5.4e-12	48.5
WP_012117362.1\|1261786_1262299_+	sigma-70 family RNA polymerase sigma factor	A0A0K2CNQ1	Brevibacillus_phage	2.9e-22	44.6
WP_003154855.1\|1262411_1263209_+\|terminase	terminase small subunit	A0A0S2MVB6	Bacillus_phage	9.4e-60	50.6
WP_003154853.1\|1263205_1264504_+\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	8.5e-151	59.6
WP_099762611.1\|1264552_1265932_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	5.1e-138	55.4
WP_014304846.1\|1265963_1266812_+\|portal	phage portal protein	A0A1B1P7E4	Bacillus_phage	4.4e-55	57.6
WP_003154848.1\|1266838_1267774_+\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	2.5e-104	62.8
WP_003154846.1\|1267790_1268174_+	DUF3199 family protein	NA	NA	NA	NA
WP_003154844.1\|1268170_1268527_+	DUF3599 family protein	NA	NA	NA	NA
WP_014304847.1\|1268523_1269027_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_014304848.1\|1269023_1269470_+	hypothetical protein	NA	NA	NA	NA
WP_003154839.1\|1269466_1269676_+	hypothetical protein	NA	NA	NA	NA
WP_014304849.1\|1269675_1271073_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	6.9e-82	40.6
WP_003154837.1\|1271074_1271518_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	8.4e-26	45.2
WP_003154836.1\|1271593_1272040_+\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	1.0e-10	35.8
WP_015239684.1\|1272081_1272234_+	hypothetical protein	NA	NA	NA	NA
WP_014304850.1\|1272221_1277348_+	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	2.0e-41	46.6
WP_007610816.1\|1277340_1278000_+	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	1.8e-08	45.3
WP_014304851.1\|1278013_1278991_+	hypothetical protein	A0A1L6BY20	Clostridium_phage	3.7e-34	30.9
WP_007610818.1\|1278990_1279257_+	DUF2577 family protein	S6C459	Thermus_phage	1.2e-06	38.6
WP_003154825.1\|1279360_1279786_+	DUF2634 domain-containing protein	A0A2H4J6K5	uncultured_Caudovirales_phage	1.5e-11	35.9
WP_003154824.1\|1279778_1280825_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	7.7e-70	44.1
WP_014304854.1\|1281384_1281657_+	hypothetical protein	NA	NA	NA	NA
WP_014304855.1\|1281659_1283282_+	hypothetical protein	A0A1P8CWR7	Bacillus_phage	5.3e-41	39.3
WP_014304856.1\|1283294_1283666_+	hypothetical protein	NA	NA	NA	NA
WP_003154819.1\|1283671_1283869_+	XkdX family protein	A0A2H4JAA1	uncultured_Caudovirales_phage	4.3e-14	61.8
WP_014304857.1\|1283925_1284687_+	hypothetical protein	NA	NA	NA	NA
WP_003154815.1\|1284738_1285002_+	hemolysin XhlA family protein	A0A2H4JD40	uncultured_Caudovirales_phage	8.8e-23	63.1
WP_003154813.1\|1285015_1285279_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	2.3e-23	65.5
WP_014304858.1\|1285292_1286171_+	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	2.8e-81	60.5

DBSCAN-SWA_4

1834199 : 1840412

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014305044.1\|1834199_1834592_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	6.5e-30	59.1
WP_003154060.1\|1834551_1836654_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	86.0
WP_003154059.1\|1836671_1837661_+	class 1b ribonucleoside-diphosphate reductase subunit beta	F8WQ21	Bacillus_phage	8.7e-156	83.6
WP_003154057.1\|1837709_1838330_+	hypothetical protein	A0A127AYS1	Bacillus_phage	2.7e-46	47.4
WP_014305045.1\|1838378_1839137_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	6.2e-53	50.4
WP_015417523.1\|1839443_1840412_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	8.0e-53	40.9

DBSCAN-SWA_5

2023596 : 2066000

Bacillus_phage(50.0%)

terminase,tail,integrase,holin,plate,head,capsid,protease,portal

attL 2052981:2052997|attR 2075504:2075520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014305123.1\|2023596_2025423_+	HNH endonuclease	A0A1P8CWI7	Bacillus_phage	4.4e-105	41.1
WP_041481866.1\|2025438_2025879_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_014305124.1\|2026071_2026764_+	hypothetical protein	Q9AZW5	Lactococcus_phage	4.1e-11	31.9
WP_014305125.1\|2026870_2027884_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	1.4e-185	96.4
WP_014305126.1\|2027940_2028204_-\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	1.1e-25	69.0
WP_003220204.1\|2028218_2028431_-	hypothetical protein	A0A290GDY2	Caldibacillus_phage	1.4e-15	59.4
WP_014305127.1\|2028482_2028671_-	XkdX family protein	Q9ZXD9	Bacillus_phage	4.1e-30	96.8
WP_014305128.1\|2028667_2029030_-	hypothetical protein	Q9ZXE0	Bacillus_phage	7.1e-55	90.8
WP_014305129.1\|2029026_2030304_-\|plate	BppU family phage baseplate upper protein	D6R402	Bacillus_phage	2.6e-144	77.9
WP_014305130.1\|2030316_2032881_-	peptidase G2	D6R401	Bacillus_phage	7.2e-287	57.0
WP_014305131.1\|2032931_2034635_-\|tail	phage tail protein	D6R400	Bacillus_phage	2.1e-181	56.9
WP_014305132.1\|2034649_2035489_-\|tail	phage tail family protein	D6R3Z9	Bacillus_phage	6.2e-94	58.6
WP_014305136.1\|2040176_2040545_-	hypothetical protein	NA	NA	NA	NA
WP_014305137.1\|2040603_2041218_-\|tail	tail protein	A0A2H4J8F3	uncultured_Caudovirales_phage	2.9e-24	34.4
WP_014305138.1\|2041232_2041616_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014305139.1\|2041612_2042011_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_014305140.1\|2042007_2042325_-\|head	phage head closure protein	A0A2H4JCB1	uncultured_Caudovirales_phage	4.2e-11	35.3
WP_014305141.1\|2042314_2042617_-\|head,tail	phage gp6-like head-tail connector protein	A0A0S2GLH6	Bacillus_phage	2.6e-10	40.5
WP_014305142.1\|2042634_2043033_-	collagen-like protein	D6R3Z0	Bacillus_phage	4.8e-12	44.5
WP_014305143.1\|2043060_2044353_-\|capsid	phage major capsid protein	A0A0A7RTL2	Clostridium_phage	1.1e-89	46.7
WP_014305144.1\|2044391_2045021_-\|head,protease	HK97 family phage prohead protease	Q9ZXF7	Bacillus_phage	3.1e-82	75.8
WP_014305145.1\|2044983_2046264_-\|portal	phage portal protein	D6R3Y6	Bacillus_phage	3.4e-152	62.8
WP_014305147.1\|2046452_2048162_-\|terminase	terminase large subunit	A0A0S2GLF0	Bacillus_phage	2.1e-205	62.6
WP_014305148.1\|2048158_2048674_-\|terminase	phage terminase small subunit P27 family	A6M947	Geobacillus_virus	2.2e-33	44.0
WP_041481868.1\|2048902_2049268_-	HNH endonuclease	A0A1U7Q1S7	Geobacillus_virus	3.9e-29	54.2
WP_014305150.1\|2049553_2050948_-	hypothetical protein	NA	NA	NA	NA
WP_014305151.1\|2051357_2052293_-	hypothetical protein	A0A1S5S8Z0	Streptococcus_phage	2.4e-14	27.3
WP_014305152.1\|2052532_2053075_-\|integrase	site-specific integrase	H0USV4	Bacillus_phage	3.4e-61	64.4
2052981:2052997	attL	NA	NA	NA	NA
WP_014305153.1\|2053071_2053524_-	DUF1492 domain-containing protein	S6AVV9	Thermus_phage	4.9e-37	57.4
WP_173363165.1\|2053542_2053719_-	hypothetical protein	NA	NA	NA	NA
WP_014305154.1\|2053810_2054494_-	hypothetical protein	NA	NA	NA	NA
WP_014305155.1\|2054483_2055629_-	DUF3578 domain-containing protein	NA	NA	NA	NA
WP_041481869.1\|2055930_2056353_-	hypothetical protein	A0A2H4J8A0	uncultured_Caudovirales_phage	4.7e-50	70.2
WP_041481870.1\|2056472_2056823_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_014305157.1\|2056974_2057232_-	hypothetical protein	F8WQ54	Bacillus_phage	5.6e-06	43.6
WP_014305158.1\|2057228_2057591_-	hypothetical protein	NA	NA	NA	NA
WP_041481871.1\|2057731_2057935_-	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	5.8e-14	58.5
WP_014305160.1\|2058184_2058325_-	BH0509 family protein	NA	NA	NA	NA
WP_014305162.1\|2058964_2059123_-	hypothetical protein	A8ATM6	Listeria_phage	2.9e-05	55.6
WP_154018700.1\|2059119_2059281_-	hypothetical protein	NA	NA	NA	NA
WP_014305163.1\|2059267_2060119_-	ATP-binding protein	A8ATL1	Listeria_phage	1.3e-22	30.2
WP_014305164.1\|2060069_2060918_-	phage replisome organizer N-terminal domain-containing protein	V9QKF6	Oenococcus_phage	4.2e-50	42.1
WP_014305165.1\|2061146_2061470_-	DUF771 domain-containing protein	Q9MC19	Lactococcus_phage	4.6e-13	40.7
WP_032858779.1\|2061533_2061740_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014305167.1\|2061904_2062303_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014305168.1\|2062734_2063835_-	hypothetical protein	NA	NA	NA	NA
WP_003153850.1\|2065454_2066000_-\|integrase	site-specific integrase	A0A0S2GLG4	Bacillus_phage	2.1e-42	48.6
2075504:2075520	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2321576 : 2327829

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003153378.1\|2321576_2322170_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.6e-14	36.6
WP_003153377.1\|2322159_2322915_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.5e-10	25.3
WP_003153376.1\|2323122_2323212_+	YjcZ family sporulation protein	NA	NA	NA	NA
WP_003153375.1\|2323299_2323821_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_003153373.1\|2323886_2324261_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA
WP_003153372.1\|2324377_2324842_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-43	59.3
WP_003153371.1\|2324874_2326071_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-116	54.9
WP_003153370.1\|2326085_2326733_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-39	44.3
WP_014305330.1\|2326713_2327829_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.5e-55	36.6

DBSCAN-SWA_7

2679266 : 2739171

uncultured_Mediterranean_phage(25.0%)

tRNA,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014305497.1\|2679266_2679710_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_003152716.1\|2679722_2681927_-	GTP diphosphokinase	A0A2I2L310	Orpheovirus	1.5e-09	34.8
WP_003152714.1\|2682084_2682597_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.5e-29	47.2
WP_014305498.1\|2682602_2684963_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.2e-91	34.8
WP_003152709.1\|2685018_2685345_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_014305499.1\|2685408_2685906_-	cation:proton antiporter regulatory subunit	NA	NA	NA	NA
WP_003152704.1\|2686037_2688257_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.0e-27	31.7
WP_003152702.1\|2688293_2688590_-	post-transcriptional regulator	NA	NA	NA	NA
WP_003152700.1\|2688705_2690262_+	stage V sporulation protein B	NA	NA	NA	NA
WP_003152699.1\|2690269_2690926_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_003152697.1\|2691092_2691479_+	TIGR04086 family membrane protein	NA	NA	NA	NA
WP_003152695.1\|2691530_2691791_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.5e-06	46.9
WP_014305500.1\|2691821_2692967_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	8.1e-89	44.8
WP_003152692.1\|2692994_2694023_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_003152687.1\|2694048_2694249_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_003152685.1\|2694241_2695246_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	4.0e-07	30.0
WP_003152683.1\|2695256_2695862_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_014305501.1\|2695996_2696506_-	BofC C-terminal domain-containing protein	NA	NA	NA	NA
WP_014305502.1\|2696638_2696878_-	hypothetical protein	NA	NA	NA	NA
WP_003152677.1\|2696891_2697485_-	YhcN/YlaJ family sporulation lipoprotein	NA	NA	NA	NA
WP_014305504.1\|2697632_2698838_-\|coat	SafA/ExsA family spore coat assembly protein	NA	NA	NA	NA
WP_003152673.1\|2698964_2700068_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_041481889.1\|2700069_2700918_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_014305506.1\|2700899_2702465_-	L-aspartate oxidase	NA	NA	NA	NA
WP_014305507.1\|2702570_2703722_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	4.6e-31	27.2
WP_014305508.1\|2703718_2704261_+	transcription repressor NadR	NA	NA	NA	NA
WP_003152668.1\|2704290_2705148_-	prephenate dehydratase	NA	NA	NA	NA
WP_007408173.1\|2705161_2705605_-	transcriptional regulator ThrR	NA	NA	NA	NA
WP_003152665.1\|2705658_2706945_-	GTPase ObgE	NA	NA	NA	NA
WP_003152664.1\|2706976_2707555_-	Spo0B domain-containing protein	NA	NA	NA	NA
WP_003152662.1\|2707872_2708157_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_012118103.1\|2708169_2708511_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_003152660.1\|2708513_2708822_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_014305510.1\|2708967_2709834_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_007408168.1\|2709826_2710630_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_003152655.1\|2710757_2711561_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_003152653.1\|2711563_2712244_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_003152650.1\|2712297_2712816_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_003152649.1\|2712812_2713676_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_003152647.1\|2713706_2714720_-	rod shape-determining protein MreB	NA	NA	NA	NA
WP_003152646.1\|2714811_2715507_-	DNA repair protein RadC	NA	NA	NA	NA
WP_014305513.1\|2715538_2716108_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_003152644.1\|2716248_2717250_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_014305514.1\|2717376_2718129_-	prepilin peptidase	NA	NA	NA	NA
WP_014305515.1\|2718268_2719561_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_014305516.1\|2719619_2722262_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	3.7e-161	42.2
WP_003152639.1\|2722714_2722906_+	hypothetical protein	NA	NA	NA	NA
WP_003152637.1\|2722920_2723943_-\|coat	spore coat protein YsxE	NA	NA	NA	NA
WP_014305517.1\|2723976_2725893_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_003152633.1\|2726025_2727315_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_095315573.1\|2727343_2728318_-	porphobilinogen synthase	NA	NA	NA	NA
WP_014305519.1\|2728320_2729103_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_003152630.1\|2729092_2730034_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_003152629.1\|2730068_2730899_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_003152628.1\|2730906_2732274_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_014305520.1\|2732468_2732960_+	hypothetical protein	NA	NA	NA	NA
WP_003152626.1\|2732992_2733580_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_003152624.1\|2733576_2735901_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	8.0e-184	44.3
WP_003152622.1\|2736100_2737759_-\|protease	ATP-dependent protease LonB	A0A167RA83	Powai_lake_megavirus	1.9e-14	32.7
WP_003152620.1\|2737908_2739171_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.2e-147	65.3

DBSCAN-SWA_8

2976670 : 3056275

Bacillus_phage(50.0%)

terminase,tail,integrase,holin,plate,head,capsid,protease,portal

attL 3016084:3016131|attR 3056447:3056494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003152243.1\|2976670_2977075_-\|holin	holin family protein	NA	NA	NA	NA
WP_003152242.1\|2977226_2977664_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	6.5e-47	61.4
WP_003152241.1\|2977788_2977938_+	YtzI protein	NA	NA	NA	NA
WP_003152240.1\|2977934_2978378_-	FixH family protein	NA	NA	NA	NA
WP_003152237.1\|2978492_2978966_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003152235.1\|2979090_2979318_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	6.9e-24	66.2
WP_003152233.1\|2979314_2979884_-	carbonic anhydrase	NA	NA	NA	NA
WP_003152229.1\|2980002_2980251_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_041481970.1\|2980448_2981780_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_003152225.1\|2981802_2982843_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_003152224.1\|2982900_2983059_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_014305634.1\|2983429_2984545_-	o-succinylbenzoate synthase	Q6A202	Oenococcus_phage	7.1e-13	21.9
WP_014305635.1\|2984541_2986005_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-76	35.2
WP_003152221.1\|2986092_2986911_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_014305636.1\|2986969_2987794_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_014305637.1\|2987781_2989518_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_003152215.1\|2989514_2990930_-	isochorismate synthase MenF	NA	NA	NA	NA
WP_003152213.1\|2991212_2991932_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_014305638.1\|2992088_2992559_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_014305639.1\|2999967_3000549_+	energy-coupled thiamine transporter ThiT	NA	NA	NA	NA
WP_014305640.1\|3000579_3002109_-	flotillin family protein	A0A2I2L4B2	Orpheovirus	2.1e-07	27.5
WP_003152186.1\|3002128_3002659_-	NfeD family protein	NA	NA	NA	NA
WP_014305641.1\|3002805_3003294_+	DinB family protein	NA	NA	NA	NA
WP_003152182.1\|3003295_3003877_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_014305643.1\|3003948_3005157_-\|holin	choline dehydrogenase	NA	NA	NA	NA
WP_014305644.1\|3005174_3006647_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_014305645.1\|3006847_3007402_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_003152178.1\|3007561_3008101_+	DUF1016 domain-containing protein	NA	NA	NA	NA
WP_014305646.1\|3008264_3008933_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_014305647.1\|3008966_3009812_-	glucosaminidase domain-containing protein	A0A0K2CP65	Brevibacillus_phage	1.5e-26	45.2
WP_041481971.1\|3009954_3011130_-	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_003152172.1\|3011347_3011989_+	cupin domain-containing protein	NA	NA	NA	NA
WP_014305649.1\|3012041_3012362_-	hypothetical protein	NA	NA	NA	NA
WP_014305650.1\|3013623_3014754_-	tetratricopeptide repeat protein	A0A1P8CWN8	Bacillus_phage	2.0e-63	40.1
WP_015387806.1\|3015073_3015277_+	hypothetical protein	NA	NA	NA	NA
3016084:3016131	attL	NA	NA	NA	NA
WP_014305652.1\|3016282_3016561_-	hypothetical protein	NA	NA	NA	NA
WP_014305653.1\|3016870_3017290_-	hypothetical protein	NA	NA	NA	NA
WP_014305654.1\|3017308_3017812_-	hypothetical protein	NA	NA	NA	NA
WP_014305656.1\|3019378_3019774_-	hypothetical protein	NA	NA	NA	NA
WP_041481897.1\|3019788_3020100_-	hypothetical protein	NA	NA	NA	NA
WP_051003492.1\|3020248_3020476_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014305657.1\|3020600_3020903_+	hypothetical protein	NA	NA	NA	NA
WP_041481898.1\|3020954_3021197_-	helix-turn-helix domain-containing protein	A0A2H4JDR0	uncultured_Caudovirales_phage	2.5e-16	54.4
WP_014305659.1\|3021660_3022665_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	5.0e-151	81.1
WP_014305660.1\|3022706_3023114_-\|holin	phage holin family protein	D6R405	Bacillus_phage	9.4e-40	67.7
WP_014305661.1\|3023152_3023395_-	XkdX family protein	M4ZS22	Bacillus_phage	6.2e-15	86.0
WP_014305662.1\|3023397_3023679_-	hypothetical protein	O64053	Bacillus_phage	6.3e-19	48.4
WP_041481899.1\|3023675_3024953_-\|plate	BppU family phage baseplate upper protein	D6R402	Bacillus_phage	6.1e-85	54.1
WP_014305664.1\|3024966_3027555_-	peptidase G2	D6R401	Bacillus_phage	4.8e-254	52.9
WP_014305665.1\|3027566_3029255_-\|tail	phage tail protein	D6R400	Bacillus_phage	2.3e-164	53.4
WP_041481973.1\|3029266_3030109_-\|tail	phage tail family protein	D6R3Z9	Bacillus_phage	1.3e-80	51.6
WP_014305667.1\|3030134_3034520_-\|tail	phage tail tape measure protein	A0A2H4JA91	uncultured_Caudovirales_phage	3.2e-69	45.7
WP_014305668.1\|3034780_3035131_-	hypothetical protein	NA	NA	NA	NA
WP_014305669.1\|3035200_3035803_-\|tail	tail protein	A0A2H4J5N7	uncultured_Caudovirales_phage	9.1e-15	29.7
WP_014305670.1\|3035816_3036203_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014305671.1\|3036199_3036598_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_041481900.1\|3036597_3036942_-\|head	phage head closure protein	NA	NA	NA	NA
WP_014305672.1\|3036931_3037240_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_051003499.1\|3037254_3038454_-\|capsid	phage major capsid protein	A0A2H4J387	uncultured_Caudovirales_phage	6.8e-70	42.1
WP_021494517.1\|3038508_3039183_-\|protease	Clp protease ClpP	A0A0B5A796	Paenibacillus_phage	4.2e-53	52.0
WP_014305675.1\|3039166_3040465_-\|portal	phage portal protein	D6R3Y6	Bacillus_phage	7.0e-105	46.9
WP_041481901.1\|3040465_3040654_-	hypothetical protein	NA	NA	NA	NA
WP_041481902.1\|3040664_3042386_-\|terminase	terminase large subunit	A0A0S2GLF0	Bacillus_phage	8.8e-196	59.3
WP_014305677.1\|3042414_3042891_-\|terminase	phage terminase small subunit P27 family	A6M947	Geobacillus_virus	1.0e-21	38.7
WP_041481903.1\|3043120_3043489_-	HNH endonuclease	A0A1U7Q1S7	Geobacillus_virus	1.7e-27	50.0
WP_014305678.1\|3043741_3044314_-	hypothetical protein	NA	NA	NA	NA
WP_021494511.1\|3044313_3044637_-	hypothetical protein	NA	NA	NA	NA
WP_014305679.1\|3044676_3045147_-	DNA-binding protein	NA	NA	NA	NA
WP_014305680.1\|3045216_3045438_-	hypothetical protein	NA	NA	NA	NA
WP_157824481.1\|3045434_3045584_-	hypothetical protein	NA	NA	NA	NA
WP_041481904.1\|3045584_3045767_-	hypothetical protein	NA	NA	NA	NA
WP_041481905.1\|3045826_3046081_-	hypothetical protein	NA	NA	NA	NA
WP_014305681.1\|3046303_3046945_+	hypothetical protein	NA	NA	NA	NA
WP_041481906.1\|3046973_3047153_-	hypothetical protein	NA	NA	NA	NA
WP_014470883.1\|3047333_3047504_-	hypothetical protein	NA	NA	NA	NA
WP_041481908.1\|3047574_3047844_-	hypothetical protein	NA	NA	NA	NA
WP_014305682.1\|3047847_3048384_-	DNA endonuclease I-HmuI	Q38137	Bacillus_phage	5.8e-05	29.9
WP_014305683.1\|3048828_3051507_-	hypothetical protein	NA	NA	NA	NA
WP_014305684.1\|3051719_3052355_-	hypothetical protein	NA	NA	NA	NA
WP_021495004.1\|3052869_3053004_-	lysogeny pheromone AimP family peptide	NA	NA	NA	NA
WP_014305687.1\|3053042_3054005_-	hypothetical protein	NA	NA	NA	NA
WP_041481909.1\|3054211_3054391_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014305688.1\|3054575_3055124_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014305689.1\|3055123_3056275_+\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	2.6e-42	35.2
3056447:3056494	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016784

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection