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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016861 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 plasmid pSTMDT12_L, complete sequence 0 crisprs cas14j 0 0 2 0
NC_016862 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 plasmid pSTMDT12_S, complete sequence 0 crisprs NA 0 0 0 0
NC_016860 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240, complete genome 3 crisprs WYL,DinG,cas3,DEDDh,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT 0 35 12 0

Results visualization

1. NC_016861
NC_016861 0 CRISPR Self-targeting Prophage 1 2 anti-CRISPR
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 21464 : 49605 32 Escherichia_phage(44.44%) transposase,integrase attL 41793:41852|attR 49609:50428
DBSCAN-SWA_2 53486 : 62782 11 Escherichia_phage(28.57%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_016860
NC_016860 04000008000001200000160000020000002400000280000032000003600000400000044000004800000 CRISPR 1 2 3 Self-targeting Prophage 1 2 3 4 5 6 7 8 9 10 11 12 anti-CRISPR
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016860_1 2909154-2909263 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016860_2 3100041-3101393 TypeI-E I-E
21 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016860_3 3117525-3119506 TypeI-E I-E
32 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016860_2 2.13|3100615|33|NC_016860|PILER-CR 3100615-3100647 33 CP051275 Salmonella phage SW-37, complete genome 24294-24326 1 0.97
NC_016860_2 2.13|3100615|33|NC_016860|PILER-CR 3100615-3100647 33 KC139516 Salmonella phage FSL SP-016, partial genome 43971-44003 1 0.97
NC_016860_2 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder 3100601-3100632 32 CP051275 Salmonella phage SW-37, complete genome 24295-24326 1 0.969
NC_016860_2 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder 3100601-3100632 32 KC139516 Salmonella phage FSL SP-016, partial genome 43971-44002 1 0.969
NC_016860_3 3.5|3117798|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3117798-3117829 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
NC_016860_3 3.5|3117798|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3117798-3117829 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
NC_016860_3 3.11|3118165|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118165-3118196 32 NZ_CP030204 Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence 130783-130814 2 0.938
NC_016860_2 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder 3100601-3100632 32 JQ182729 Enterobacterial phage mEp390, complete genome 23951-23982 3 0.906
NC_016860_2 2.10|3100436|28|NC_016860|PILER-CR 3100436-3100463 28 NC_009927 Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence 337987-338014 5 0.821
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 CP023013 Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence 1387347-1387378 5 0.844
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP022766 Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence 1461559-1461590 5 0.844
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 CP023015 Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence 599340-599371 5 0.844
NC_016860_2 2.15|3100737|33|NC_016860|PILER-CR 3100737-3100769 33 MT774487 Salmonella phage MG40, complete genome 21745-21777 6 0.818
NC_016860_2 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder 3100723-3100754 32 MT774487 Salmonella phage MG40, complete genome 21746-21777 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 850282-850313 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_003078 Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence 887728-887759 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP019586 Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence 856045-856076 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 835457-835488 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021799 Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence 953948-953979 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_017323 Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence 431895-431926 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP009146 Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence 843687-843718 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 833486-833517 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021828 Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence 457962-457993 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 1502459-1502490 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 1188725-1188756 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021831 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence 1094940-1094971 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021823 Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence 574071-574102 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021814 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence 758103-758134 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021795 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence 92938-92969 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 1622461-1622492 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021806 Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence 174090-174121 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP021218 Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence 996227-996258 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP026527 Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence 856529-856560 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP019484 Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence 1026857-1026888 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP019487 Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence 801217-801248 6 0.812
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_020560 Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence 887731-887762 6 0.812
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NC_012528 Deinococcus deserti VCD115 plasmid 3, complete sequence 121315-121346 6 0.812
NC_016860_2 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT 3100375-3100406 32 NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 188177-188208 7 0.781
NC_016860_2 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT 3100375-3100406 32 CP013931 Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence 192938-192969 7 0.781
NC_016860_2 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT 3100375-3100406 32 NC_019394 Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence 188204-188235 7 0.781
NC_016860_2 2.7|3100132|31|NC_016860|PILER-CR 3100132-3100162 31 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10087 7 0.774
NC_016860_2 2.15|3100737|33|NC_016860|PILER-CR 3100737-3100769 33 JQ288021 Salmonella phage SPN3UB, complete genome 39452-39484 7 0.788
NC_016860_2 2.15|3100737|33|NC_016860|PILER-CR 3100737-3100769 33 MH370364 Salmonella phage S107, complete genome 29958-29990 7 0.788
NC_016860_2 2.15|3100737|33|NC_016860|PILER-CR 3100737-3100769 33 MH370382 Salmonella phage S135, complete genome 29958-29990 7 0.788
NC_016860_2 2.15|3100737|33|NC_016860|PILER-CR 3100737-3100769 33 MH370383 Salmonella phage S137, complete genome 29958-29990 7 0.788
NC_016860_2 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder 3100723-3100754 32 JQ288021 Salmonella phage SPN3UB, complete genome 39452-39483 7 0.781
NC_016860_2 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder 3100723-3100754 32 MH370364 Salmonella phage S107, complete genome 29959-29990 7 0.781
NC_016860_2 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder 3100723-3100754 32 MH370382 Salmonella phage S135, complete genome 29959-29990 7 0.781
NC_016860_2 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder 3100723-3100754 32 MH370383 Salmonella phage S137, complete genome 29959-29990 7 0.781
NC_016860_2 2.33|3100906|32|NC_016860|CRT,CRISPRCasFinder 3100906-3100937 32 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29079 7 0.781
NC_016860_2 2.33|3100906|32|NC_016860|CRT,CRISPRCasFinder 3100906-3100937 32 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142294-142325 7 0.781
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP030829 Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence 360377-360408 7 0.781
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NC_011366 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence 208454-208485 7 0.781
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 449563-449594 7 0.781
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 167100-167131 7 0.781
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP044078 Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence 135155-135186 7 0.781
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP031081 Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence 195902-195933 7 0.781
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 581076-581107 7 0.781
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 122557-122588 7 0.781
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 529537-529568 7 0.781
NC_016860_3 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118958-3118989 32 NZ_CP034156 Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence 327444-327475 7 0.781
NC_016860_2 2.2|3100131|32|NC_016860|CRISPRCasFinder,CRT 3100131-3100162 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
NC_016860_2 2.5|3100314|32|NC_016860|CRISPRCasFinder,CRT 3100314-3100345 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
NC_016860_2 2.5|3100314|32|NC_016860|CRISPRCasFinder,CRT 3100314-3100345 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
NC_016860_2 2.18|3100920|33|NC_016860|PILER-CR 3100920-3100952 33 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142293-142325 8 0.758
NC_016860_2 2.18|3100920|33|NC_016860|PILER-CR 3100920-3100952 33 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29080 8 0.758
NC_016860_2 2.32|3100845|32|NC_016860|CRT,CRISPRCasFinder 3100845-3100876 32 NZ_CP016179 Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence 203354-203385 8 0.75
NC_016860_2 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder 3101089-3101120 32 AP013976 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS *** 6246-6277 8 0.75
NC_016860_2 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder 3101089-3101120 32 JX536274 Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence 3959-3990 8 0.75
NC_016860_3 3.8|3117981|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3117981-3118012 32 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135469-135500 8 0.75
NC_016860_3 3.8|3117981|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3117981-3118012 32 NZ_CP031801 Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence 11654-11685 8 0.75
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 43093-43124 8 0.75
NC_016860_3 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118287-3118318 32 NZ_CP053442 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence 152052-152083 8 0.75
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 1098771-1098802 8 0.75
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NZ_CP014128 Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence 160189-160220 8 0.75
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NC_014561 Pantoea vagans C9-1 plasmid pPag1, complete sequence 156443-156474 8 0.75
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 137983-138014 8 0.75
NC_016860_3 3.16|3118470|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118470-3118501 32 LQ277707 Sequence 2 from Patent WO2016071503 12422-12453 8 0.75
NC_016860_3 3.16|3118470|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118470-3118501 32 LZ998055 JP 2017534684-A/2: Phage Therapy 12422-12453 8 0.75
NC_016860_3 3.17|3118531|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118531-3118562 32 CP001770 Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence 145771-145802 8 0.75
NC_016860_3 3.26|3119080|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119080-3119111 32 NZ_CP014942 Rhodococcus sp. BH4 plasmid, complete sequence 462005-462036 8 0.75
NC_016860_3 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119141-3119172 32 NC_028940 Pectobacterium bacteriophage PM2, complete genome 79087-79118 8 0.75
NC_016860_2 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder 3100723-3100754 32 MK448228 Klebsiella phage ST15-VIM1phi2.1, complete genome 32866-32897 9 0.719
NC_016860_2 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder 3101028-3101059 32 MT162468 Synechococcus phage S-H25, complete genome 69929-69960 9 0.719
NC_016860_3 3.10|3118104|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118104-3118135 32 NZ_CP051686 Duganella sp. GN2-R2 plasmid unnamed1, complete sequence 45237-45268 9 0.719
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NZ_CP045722 Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence 332-363 9 0.719
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NZ_CP022519 Pantoea vagans strain FBS135 plasmid pPant3, complete sequence 62976-63007 9 0.719
NC_016860_3 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118348-3118379 32 NZ_CP028351 Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence 144976-145007 9 0.719
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 MN062720 Microbacterium phage FuzzBuster, complete genome 19374-19405 9 0.719
NC_016860_3 3.19|3118653|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118653-3118684 32 MN694645 Marine virus AFVG_250M761, complete genome 31050-31081 9 0.719
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 DQ674738 Aeromonas phage phiO18P, complete genome 15707-15738 9 0.719
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NZ_CP031166 Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence 380725-380756 9 0.719
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 153785-153816 9 0.719
NC_016860_3 3.21|3118775|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118775-3118806 32 MN693046 Marine virus AFVG_25M413, complete genome 4323-4354 9 0.719
NC_016860_3 3.21|3118775|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118775-3118806 32 MN693008 Marine virus AFVG_117M9, complete genome 4316-4347 9 0.719
NC_016860_3 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118897-3118928 32 NZ_CP021372 Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence 353298-353329 9 0.719
NC_016860_3 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118897-3118928 32 AM749121 Streptococcus phage M102 complete genome 7893-7924 9 0.719
NC_016860_3 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118897-3118928 32 NC_012884 Streptococcus phage M102, complete genome 7893-7924 9 0.719
NC_016860_2 2.1|3100070|32|NC_016860|CRISPRCasFinder,CRT 3100070-3100101 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NC_016860_2 2.1|3100070|32|NC_016860|CRISPRCasFinder,CRT 3100070-3100101 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NC_016860_2 2.21|3101103|33|NC_016860|PILER-CR 3101103-3101135 33 NZ_CP020539 Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence 53255-53287 10 0.697
NC_016860_2 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder 3100601-3100632 32 NZ_AP022571 Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence 153476-153507 10 0.688
NC_016860_2 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder 3101028-3101059 32 LN681539 Clostridium phage phiCD505, complete genome 8933-8964 10 0.688
NC_016860_2 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder 3101028-3101059 32 JX145341 Clostridium phage phiMMP02, complete genome 8932-8963 10 0.688
NC_016860_2 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder 3101028-3101059 32 NC_011398 Clostridium phage phiCD27, complete genome 8924-8955 10 0.688
NC_016860_2 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder 3101028-3101059 32 NC_048642 Clostridium phage CDKM9, complete genome 8871-8902 10 0.688
NC_016860_2 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder 3101028-3101059 32 KX228400 Clostridium phage CDKM15, complete genome 9066-9097 10 0.688
NC_016860_2 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder 3101089-3101120 32 NZ_CP020539 Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence 53255-53286 10 0.688
NC_016860_3 3.1|3117554|32|NC_016860|CRISPRCasFinder,CRT 3117554-3117585 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
NC_016860_3 3.4|3117737|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3117737-3117768 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 NZ_CP019257 Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence 20006-20037 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 NZ_CP019274 Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence 9024-9055 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 NZ_CP019275 Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence 27130-27161 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 NZ_CP019279 Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence 19363-19394 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 23427-23458 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 NC_049342 Escherichia phage 500465-1, complete genome 24342-24373 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 KY271398 Klebsiella phage 4 LV-2017, complete genome 28240-28271 10 0.688
NC_016860_3 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118592-3118623 32 CP025900 Escherichia phage sp., complete genome 24342-24373 10 0.688
NC_016860_3 3.22|3118836|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118836-3118867 32 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1134787-1134818 10 0.688
NC_016860_3 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119141-3119172 32 NZ_CP042995 Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence 68697-68728 10 0.688
NC_016860_3 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119141-3119172 32 NZ_CP026129 Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence 43950-43981 10 0.688
NC_016860_3 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119141-3119172 32 NZ_CP038501 Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence 49131-49162 10 0.688
NC_016860_3 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119141-3119172 32 NZ_CP046044 Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence 66631-66662 10 0.688
NC_016860_3 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3119141-3119172 32 NZ_CP048015 Acinetobacter towneri strain 205 plasmid pAT205, complete sequence 147167-147198 10 0.688
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NZ_CP054036 Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence 234768-234799 11 0.656
NC_016860_3 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR 3118714-3118745 32 NZ_CP022568 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence 299431-299462 11 0.656

1. spacer 2.13|3100615|33|NC_016860|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.97

tggaccgatggggccaacatcgccgaacgtggc	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtggc	Protospacer
.********************************

2. spacer 2.13|3100615|33|NC_016860|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.97

tggaccgatggggccaacatcgccgaacgtggc	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtggc	Protospacer
***************************.*****

3. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 3.5|3117798|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 3.5|3117798|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 3.11|3118165|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 2.10|3100436|28|NC_016860|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  * 

10. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

11. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

12. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

13. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.818

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatggc	Protospacer
****  **********************  . *

14. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  . 

15. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

16. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

17. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

18. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

19. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

20. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

21. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

22. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

23. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

24. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

25. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

26. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

27. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

28. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

29. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

30. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

31. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

32. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

33. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

34. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

35. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

36. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.************* 

37. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

--agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
ccaacgc--catggccgacccgcaccacccgacc	Protospacer
  *.***  ******* *** ***********.*

38. spacer 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

39. spacer 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

40. spacer 2.6|3100375|32|NC_016860|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***  

41. spacer 2.7|3100132|31|NC_016860|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 7, identity: 0.774

cgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
ttcaatattggggaaaaacccctcgttacct	Protospacer
.  **** *************** **** *.

42. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

43. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

44. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

45. spacer 2.15|3100737|33|NC_016860|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

46. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  . 

47. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  . 

48. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  . 

49. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  . 

50. spacer 2.33|3100906|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  * 

51. spacer 2.33|3100906|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  * 

52. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

53. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

54. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

55. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

56. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**  

57. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**  

58. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * ** 

59. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * ** 

60. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * ** 

61. spacer 3.24|3118958|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
agccccacatggcgcaccggcacggcactagc	Protospacer
*** ********* ********* .* * * *

62. spacer 2.2|3100131|32|NC_016860|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

63. spacer 2.5|3100314|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

64. spacer 2.5|3100314|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

65. spacer 2.18|3100920|33|NC_016860|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

66. spacer 2.18|3100920|33|NC_016860|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

67. spacer 2.32|3100845|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.     

68. spacer 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    *** 

69. spacer 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    *** 

70. spacer 3.8|3117981|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****  

71. spacer 3.8|3117981|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

72. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

73. spacer 3.13|3118287|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

74. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************  

75. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

76. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

77. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** ******* 

78. spacer 3.16|3118470|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************ 

79. spacer 3.16|3118470|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************ 

80. spacer 3.17|3118531|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

81. spacer 3.26|3119080|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

82. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
gctctcgtgtgttatatagttatttaatgata	Protospacer
*  ..** * ********************  

83. spacer 2.30|3100723|32|NC_016860|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******   

84. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.    

85. spacer 3.10|3118104|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********. 

86. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

87. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

88. spacer 3.14|3118348|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

89. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

90. spacer 3.19|3118653|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* **** 

91. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

92. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.*************** 

93. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

94. spacer 3.21|3118775|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******... 

95. spacer 3.21|3118775|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******... 

96. spacer 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

97. spacer 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

98. spacer 3.23|3118897|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

99. spacer 2.1|3100070|32|NC_016860|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

100. spacer 2.1|3100070|32|NC_016860|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****  

101. spacer 2.21|3101103|33|NC_016860|PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.697

cgttgcgtcaggttgatccagtgcgtcagcggc	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagattc	Protospacer
.   .**.********** **********   *

102. spacer 2.28|3100601|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* * 

103. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*    

104. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*    

105. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*    

106. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*    

107. spacer 2.35|3101028|32|NC_016860|CRT,CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*    

108. spacer 2.36|3101089|32|NC_016860|CRT,CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********   

109. spacer 3.1|3117554|32|NC_016860|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********   

110. spacer 3.4|3117737|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..  

111. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

112. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

113. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

114. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

115. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

116. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

117. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

118. spacer 3.18|3118592|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

119. spacer 3.22|3118836|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **   

120. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******   

121. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******   

122. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******   

123. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******   

124. spacer 3.27|3119141|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******   

125. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

126. spacer 3.20|3118714|32|NC_016860|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 364980 : 409928 68 Enterobacteria_phage(77.61%) terminase,integrase,coat,protease,lysis,portal attL 355750:355766|attR 418519:418535
DBSCAN-SWA_2 1016268 : 1025000 7 Dickeya_phage(14.29%) transposase,protease NA
DBSCAN-SWA_3 1075063 : 1173913 102 Salmonella_phage(42.11%) terminase,tail,tRNA,protease,lysis,holin,portal NA
DBSCAN-SWA_4 2069869 : 2077123 8 Morganella_phage(33.33%) NA NA
DBSCAN-SWA_5 2166466 : 2176972 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_6 2245280 : 2254451 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_7 2273858 : 2340254 60 Salmonella_phage(28.57%) tail,lysis,holin NA
DBSCAN-SWA_8 2679010 : 2783851 111 Salmonella_phage(37.1%) terminase,integrase,tail,head,tRNA,holin,transposase,lysis,capsid,portal attL 2703555:2703571|attR 2791755:2791771
DBSCAN-SWA_9 2804984 : 2839594 39 Cronobacter_phage(68.97%) terminase,integrase,capsid,tail,plate,head,tRNA,holin,portal attL 2803437:2803452|attR 2831602:2831617
DBSCAN-SWA_10 2867993 : 2901406 45 Salmonella_phage(97.56%) terminase,integrase,tail,plate,head,lysis,capsid,portal attL 2867832:2867878|attR 2901524:2901570
DBSCAN-SWA_11 4033545 : 4081862 47 Escherichia_phage(33.33%) transposase,integrase attL 4043832:4043846|attR 4082976:4082990
DBSCAN-SWA_12 4523003 : 4543423 26 Burkholderia_phage(45.0%) plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage