| NC_016908.1|WP_012151373.1|1170555_1171473_-|tyrosine-recombinase-XerC |
gnl|CDD|234698 |
PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.
|
1.14085e-128 |
| NC_016908.1|WP_012151375.1|1171980_1172583_-|phospholipase-D-family-protein |
gnl|CDD|197267 |
cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Catalytic domain of an EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins. Nuc is an endonuclease cleaving both single- and double-stranded DNA. It is the smallest known member of the phospholipase D (PLD, EC 3.1.4.4) superfamily that includes a diverse group of proteins with various catalytic functions. Most members of this superfamily have two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain and both are required for catalytic activity. However, Nuc only has one copy of the HKD motif per subunit but form a functionally active homodimer (it is most likely also active in solution as a multimeric protein), which has a single active site at the dimer interface containing the HKD motifs from both subunits. Due to the lack of a distinct domain for DNA binding, Nuc cuts DNA non-specifically. It utilizes a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.
|
5.66231e-65 |
| NC_016908.1|WP_012151383.1|1184888_1187123_-|DNA-translocase-FtsK |
gnl|CDD|236669 |
PRK10263, PRK10263, DNA translocase FtsK; Provisional.
|
3.22441e-177 |
| NC_016908.1|WP_012262616.1|1187290_1188160_-|acyltransferase |
gnl|CDD|224748 |
COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].
|
6.95845e-11 |
| NC_016908.1|WP_012151385.1|1188320_1189100_+|type-I-methionyl-aminopeptidase |
gnl|CDD|235576 |
PRK05716, PRK05716, methionine aminopeptidase; Validated.
|
3.00898e-161 |
| NC_016908.1|WP_010977828.1|1168948_1169164_+|translation-initiation-factor-IF-1 |
gnl|CDD|178954 |
PRK00276, infA, translation initiation factor IF-1; Validated.
|
1.11247e-43 |
| NC_016908.1|WP_012151371.1|1169175_1169823_+|septum-formation-inhibitor-Maf |
gnl|CDD|234957 |
PRK01526, PRK01526, Maf-like protein; Reviewed.
|
2.0307e-145 |
| NC_016908.1|WP_012151372.1|1169956_1170388_-|RNA-polymerase-binding-protein-DksA |
gnl|CDD|274124 |
TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].
|
1.4719e-54 |
| NC_016908.1|WP_012151378.1|1174926_1176501_-|peptidylprolyl-isomerase |
gnl|CDD|182731 |
PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
|
9.27554e-18 |
| NC_016908.1|WP_012151377.1|1173301_1174780_-|UbiD-family-decarboxylase |
gnl|CDD|223121 |
COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].
|
0 |
| NC_016908.1|WP_012262613.1|1173052_1173181_-|hypothetical-protein |
gnl|CDD|225783 |
COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism].
|
5.60153e-12 |
| NC_016908.1|WP_155114800.1|1176694_1181911_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein |
gnl|CDD|273608 |
TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].
|
5.49369e-50 |
