CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017076	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC2, complete sequence	0 crisprs	NA	0	0
NC_017077	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC7, complete sequence	0 crisprs	NA	0	0
NC_017072	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC9, complete sequence	0 crisprs	NA	0	0
NC_017068	Selenomonas ruminantium subsp. lactilytica TAM6421, complete genome	5 crisprs	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k	22	9
NC_017078	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence	0 crisprs	c2c9_V-U4,WYL	0	0
NC_017071	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC8, complete sequence	0 crisprs	NA	0	0
NC_017069	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC4, complete sequence	0 crisprs	NA	0	1
NC_017070	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC6, complete sequence	0 crisprs	NA	0	0
NC_017074	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC5, complete sequence	0 crisprs	NA	0	1
NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56997 : 71515

Clostridioides_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014426165.1\|56997_57417_-	deoxyuridine 5'-triphosphate nucleotidohydrolase yncF	A0A1P8CX51	Bacillus_phage	3.7e-31	52.5
WP_014426166.1\|57419_57716_-	hypothetical protein	NA	NA	NA	NA
WP_102013525.1\|57859_58480_-	hypothetical protein	A0A2R2ZGQ4	Clostridioides_phage	5.7e-20	31.1
WP_014426169.1\|58451_58628_-	hypothetical protein	NA	NA	NA	NA
WP_014426170.1\|58617_58839_-	hypothetical protein	NA	NA	NA	NA
WP_014426173.1\|59160_61392_-	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	A0A2R2ZGN9	Clostridioides_phage	7.8e-120	35.5
WP_014426174.1\|61391_61850_-	hypothetical protein	NA	NA	NA	NA
WP_014426175.1\|61857_62385_-	hypothetical protein	NA	NA	NA	NA
WP_014426176.1\|62392_62920_-	hypothetical protein	NA	NA	NA	NA
WP_014426177.1\|62912_63314_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	2.7e-07	27.9
WP_014426178.1\|63310_63520_-	hypothetical protein	NA	NA	NA	NA
WP_014426179.1\|63516_64284_-	DUF3310 domain-containing protein	A0A249XUN0	Enterococcus_phage	4.0e-07	41.4
WP_014426180.1\|64384_65113_-	HNH endonuclease	A0A2H4J6F5	uncultured_Caudovirales_phage	4.9e-23	34.1
WP_102013535.1\|65109_65793_-	hypothetical protein	NA	NA	NA	NA
WP_014426182.1\|66175_68161_-	toprim domain-containing protein	C7F4F5	Cyanophage	7.4e-29	30.4
WP_014426183.1\|68163_68331_-	hypothetical protein	NA	NA	NA	NA
WP_014426184.1\|68393_68774_-	3D domain-containing protein	NA	NA	NA	NA
WP_014426185.1\|68808_69015_-	hypothetical protein	NA	NA	NA	NA
WP_014426186.1\|69014_69197_-	hypothetical protein	NA	NA	NA	NA
WP_014426187.1\|69200_69509_-	hypothetical protein	NA	NA	NA	NA
WP_014426189.1\|69879_70035_-	hypothetical protein	NA	NA	NA	NA
WP_014426190.1\|70109_70709_-	hypothetical protein	A0A0F7INH5	Delftia_phage	1.1e-09	28.8
WP_014426191.1\|71155_71515_+	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	2.3e-05	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017068

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CRISPR-Cas detection and classification

Crispr_ID: NC_017068_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017068_1

148083-148196

Orphan

Consensus_repeat	Method
GCGCGACGAAACTCTGAACGGTATATTTTGCTTGTGGCAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017068_1

>merge|NC_017068|1|148083-148196|CRISPRCasFinder
GCGCGACGAAACTCTGAACGGTATATTTTGCTTGTGGCAAAATCTGAACAAGGGCGTTATGTCGCGACAGAGCGCGACGAAACTCTGAACGGTATATTTTGCTTGTGGCAAAAT

>NC_017068|1|1|148083-148196|CRISPRCasFinder
GCGCGACGAAACTCTGAACGGTATATTTTGCTTGTGGCAAAAT	CTGAACAAGGGCGTTATGTCGCGACAGA
GCGCGACGAAACTCTGAACGGTATATTTTGCTTGTGGCAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017068.1\|WP_102013446.1\|151754_152891_+\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NC_017068.1\|WP_014423275.1\|142561_143863_+\|putative-lipase	unknown	unknown	gnl\|CDD\|238287
NC_017068.1\|WP_014423279.1\|148277_149039_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293819
NC_017068.1\|WP_014423272.1\|133191_133482_+\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014423273.1\|140274_141636_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NC_017068.1\|WP_014423270.1\|130225_132139_+\|fructose-bisphosphatase-class-III	unknown	unknown	gnl\|CDD\|377726
NC_017068.1\|WP_014423284.1\|152894_154877_+\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|131269
NC_017068.1\|WP_014423271.1\|132381_133146_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NC_017068.1\|WP_014423280.1\|149056_150160_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_017068.1\|WP_014423287.1\|157165_158665_+\|tagaturonate-reductase	unknown	unknown	gnl\|CDD\|235147
NC_017068.1\|WP_014423285.1\|154906_155788_+\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NC_017068.1\|WP_014423282.1\|150728_151715_+\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	unknown	unknown	gnl\|CDD\|378398
NC_017068.1\|WP_014423286.1\|155774_156965_+\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
NC_017068.1\|WP_014423288.1\|158676_160164_+\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
NC_017068.1\|WP_014423276.1\|143941_145066_+\|DUF362-domain-containing-protein	unknown	unknown	gnl\|CDD\|225358
NC_017068.1\|WP_014423277.1\|145125_146076_-\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|311255
NC_017068.1\|WP_014423278.1\|146448_147861_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NC_017068.1\|WP_014423281.1\|150159_150639_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|376840
NC_017068.1\|WP_014423269.1\|129745_130186_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NC_017068.1\|WP_014423274.1\|141653_142229_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705

Protein	Function_ID	Function_description	E-value
NC_017068.1\|WP_102013446.1\|151754_152891_+\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.12513e-132
NC_017068.1\|WP_014423275.1\|142561_143863_+\|putative-lipase	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	4.03501e-27
NC_017068.1\|WP_014423279.1\|148277_149039_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	9.83202e-44
NC_017068.1\|WP_014423284.1\|152894_154877_+\|PASTA-domain-containing-protein	gnl\|CDD\|131269	TIGR02214, sporulation_specific_penicillin-binding_protein, stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Sporulation and germination].	1.54781e-174
NC_017068.1\|WP_014423273.1\|140274_141636_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	3.12888e-132
NC_017068.1\|WP_014423270.1\|130225_132139_+\|fructose-bisphosphatase-class-III	gnl\|CDD\|377726	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.	0
NC_017068.1\|WP_014423271.1\|132381_133146_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.92778e-45
NC_017068.1\|WP_014423280.1\|149056_150160_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.38524e-103
NC_017068.1\|WP_014423287.1\|157165_158665_+\|tagaturonate-reductase	gnl\|CDD\|235147	PRK03643, PRK03643, tagaturonate reductase.	0
NC_017068.1\|WP_014423285.1\|154906_155788_+\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	5.44555e-138
NC_017068.1\|WP_014423282.1\|150728_151715_+\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	gnl\|CDD\|378398	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.	7.17281e-22
NC_017068.1\|WP_014423286.1\|155774_156965_+\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	9.31054e-139
NC_017068.1\|WP_014423288.1\|158676_160164_+\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NC_017068.1\|WP_014423276.1\|143941_145066_+\|DUF362-domain-containing-protein	gnl\|CDD\|225358	COG2768, COG2768, Uncharacterized Fe-S center protein [General function prediction only].	7.30412e-110
NC_017068.1\|WP_014423277.1\|145125_146076_-\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|311255	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus. The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.	3.22974e-05
NC_017068.1\|WP_014423278.1\|146448_147861_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NC_017068.1\|WP_014423281.1\|150159_150639_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|376840	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase. This family of proteins are predicted to be SPOUT methyltransferases.	2.03387e-82
NC_017068.1\|WP_014423269.1\|129745_130186_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	2.56425e-05
NC_017068.1\|WP_014423274.1\|141653_142229_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	3.79225e-103

>NC_017068.1|WP_014423278.1|146448_147861_+|pyruvate-kinase
MLKKTKIVCTQGPSTEKPGVIDALIANGMNCARFNFSHGDHEEHLGRINMVREAAKKAGKVISLILDTKGPEMRLGEFKDGKVMLEKGNQFTLTYDDVPGDETHVSVNHKGLYTEVKPGDTLLLSDGLVALKVDEIKGKDIVTTIQNSGKMSTRKRVAAPGVSLGLPPISEQDAKDIIFGCEQDMDFVAASFIQRPDDVLAIRKLIEEHNGRMEIIPKIENLEGVKNFDAILEVSDGIMVARGDLGVEVPAEDVPLIQKEIIRKCNAAGKPVIVATQMLDSMERNPRPTRAEVSDVGNAILDGTDAIMLSGETASGDYPVEAVSTMNRIAQRMESSLEYKELFVERGFQHMESRTRAIAHATVQMAYELDAPAIITPTESGYTTKVVSKYRPKAAIVAYTPSEKALRQLNLRWGVYPVLGTMWNDVDEMISNATAAAVKEGLVERGDLTIITSGVKAGKGNSSSVRVYNI
>NC_017068.1|WP_014423277.1|145125_146076_-|flagellar-filament-capping-protein-FliD
MSTISAMTKDTYTMYKMAQGDSQNTTAAQKTASKTEDDSTKSSAQSKSYATAAANVSSLSNLVDSFSSSYSSKKTNASQDSIASLWSGYTNSTTSSLASMSAISGVSSSAAGLVNSYNEAKSTFDTQFKAYMGDLQKSAQTVKNMSYEFSADDIKEAEDGSKTYSDGLKAAIKNVKELVSDYNDALDLTSDYSSVGKRMESLHKSFADTTYRADTYKQLGITVDSKTGKMSVDEDKLAKALTENGDRVKNALGSNGLAGKAEQHLTEANNQSDKLFPSLQNMFGDSIKTASAYTNPRVLSASVQYGMIGNLFSTMF
>NC_017068.1|WP_014423276.1|143941_145066_+|DUF362-domain-containing-protein
MEKSKVYFTSFRTQVGTSWLEKLRRLCIAAGIKNIDMEGKFVAIKMHFGEMGNLAFLRPQYAKVVADLVKEQGGLPFLTDCNTLYPGSRKHALEHMDIANLHGFNPMTTGCQIIIGDGLKGTDDVEVPVKNGEYVKAAKIGRAVMDADIVISLAHFKGHEMTGFGGAIKNLGMGCGSRAGKMEQHSSGKCVVNPEKCRNCHKCAKECGSDAISFDTGKAYINPELCKGCGRCIGACGFSAIRNEQWDAGDLLDKKMAEYTQAVVQDRPCFHINLAMDISPNCDCHGENDAPILPDIGMFASFDPVAIDQASADACQKAAPIRDSQLGDNLAQEDWHHHHDVFMDNNPNVHWKETLEHAEKIGMGTREYELVILK
>NC_017068.1|WP_014423275.1|142561_143863_+|putative-lipase
MWRRIFLLCFALLLSLSPVQARQLDKAELNFATALISMSTYSAELNVLARNWLEELGWVVDSHEYATALAAGRVHILAKKLPDDEQIYVLAFPGTERKQDAIVDLRVKRVPFGGKNPSEFAAEAAREERQGSEPLVHKGFNDYTQAALFSEQLPEFGNLTLGEVIARDLRNHPAYQLYLTGHSLGGAAATLAAARLADMGVQPQQLQVITFGAPAVGNTAFARAYEKRMQLTRITMEGDPVKAALQSLSGSYAQFGEKVVWDSHLGRFPHDMTLYLDEALRHYQDAHDELEKPLLITGHCQQLAGPLYVAPFRFKLDDMLSGDQSYMERVARGILKGAYTPVIFSKGQGKVYQDARQQGARYVLFERFRGQRIKKEEANFRLTLEEELYDIEGNLLAYQSYSTTASTLTPIEAVGYLVMQAEAGRSAKLNVKK
>NC_017068.1|WP_014423274.1|141653_142229_+|xanthine-phosphoribosyltransferase
MELLKERILKEGHCLSGNILKVDSFVNHQIDPEFTMEMGKEFVRRFADVKIDKVLTIESSGIAIGMAVAYELKTRMVFARKNPSLLMQEDMYTCPITSYTKKEAKLVYVLKKFLQAGENILIIDDFMADGNAALGLANIVEQAGGKVVGIGIAIEKSFQQGAQRVRDAGYRVESLARIASLENEQIKFVED
>NC_017068.1|WP_014423273.1|140274_141636_+|purine-permease
MKEASIANIYQLDGRVPLGAAIPFGLQHVLAMFVANLTPIVIIAGAAGFDKAMTAMLVQNAMFVAGIATLVQLYPLWKVGARLPIVMGVSFTFVTAICFVAANFGYGAVVGAIIVGGIFEGTLGLMAKYWRRLISPIVSSIVVTTIGFSLLGIGIRSFGGGYNDSYGSLDNLLLGTVTLVTCLLFSSFAKGYHKQLSVLVGLVVGYVLAFCMGKINLSAVFGGNIIALPNFLPVAPEFHLGAIFSIGIIFLVSAAETIGDTTAMAIVGLKRDVREREISGSLACDGFCSSVAALFGCSPITSFSQNVGLIAMTKVVNRFAIMTGAMAMIIAGLFPPIGAFFASLPDAVLGGCTIMMFGSIMVSGIQMMSRVQMTQRNVTIAALSFSIGIGTTTASENAIWHVFPQLVQDVFSGNCVAVVYVVAILLDTFLPANMEVAQQEDEEEVLEPAIDNH
>NC_017068.1|WP_014423272.1|133191_133482_+|hypothetical-protein
MATDIDSKAFPSGEGGSRRLTKVIPSPPSGLVYQTFLGKIEKSSKKVLTGEANSCNIIQVADRHGNETAKQALSGRPLERSKKLRKNFKKVLDKLI
>NC_017068.1|WP_014423271.1|132381_133146_-|TSUP-family-transporter
MEFLDLGTTAFLVFFGFMAAFIDSVVGGGGLISIPALLWTGLPPVLALGTNKCAAVMGALTSFITFVRSGKVDGYLMKRLFPLSFLGSALGVLAVQMVPPDILRPLVIVMLVAVLIYSICKKDWGKENKYAGMSTRLLLLAGLVSFALGFYDGFFGPGTGSFLLFALLTVGFDFLGAAANARTLNFASNISAVIFFGTLGQIEYAYAIPMGLSMIAGAYCGSTMALKKGVGYVRPLFIIMTTILIGKLAMDLLR
>NC_017068.1|WP_014423270.1|130225_132139_+|fructose-bisphosphatase-class-III
MVRGTAVKGRPNKIMRLLAEKYPTKESVYEQLIYLQSRLSLPKGIEHFMSDLHGEYASFFHILNNCSGVIREKVDYVFGERLSEEEKAEFCTLIYYPKEKIEQITNDHKNTLEWYRKNLSQLLELSKLMSYKYPASKVYGFIPKRYESVIVELMNTRPEADNAQFVYHKRLLNTIVQIDSGADFIEAFTVLIKRLAVDRLHIVGDFFDRGNRPDAILNLLMKHPSVDIQWGNHDVLWMGAALGNETCIAAVVRNSLRYNNTDVLERGYGISLRPLTTFASRSYPDANPIKAAEKAITMMMFKLEGQLIRRHPEYQMDSRLLLDKIDFRSSHAVLGDGKRYELESAYFPTIDEDSADPYQLTEKEAVIIADLKSYFLESAVLQQHVDYLYQKGSLYTRYNGNLLFHGCVLLNEDGTMRSVSYGGQELKGRAWFDYCDRMAREAYLHHTASAVDFMYFLWCGRLSPVSGREFKTFERAYIPDESTWKEPSDPYFKYIDSEKTCAMVLKEFGLDPDKGHIINGHVPVKVKKGESPVKAGGRAIIIDGGFCKAYHSKTGISGYTLISNSRGLRLLQHQKIADVREALRENQDIESVSETVELQARRTTLGDTDEGKLIQDEITDLYNLLLAYQNGLIKPQE
>NC_017068.1|WP_014423269.1|129745_130186_+|metal-dependent-hydrolase
MKWVNHEIVTGVIVYGATGDLLSTVFSMAGAIFPDKVEGRPGANYWSWRARHRGWSHWPVIYIAIYALMQLGFLPQGADAEKGVSFVCIGALLHIAEDAVCGKVPFLFPWQKVGIKLFKVGSVTEYLFSMALVIGIYIIHVKLMLK
>NC_017068.1|WP_014423279.1|148277_149039_+|MBL-fold-metallo-hydrolase
MQVRILASGSKGNAVFVEMDGVRLLLDAGISATKIKKGLLGIGVEPSSLDGILITHEHRDHVAGLITLSKWYHLPIFTRPGTIEHMKDRAAIPAECFCPIGEHFAIGGLQVDSFNISHDAAEPVGYRLKGRKNVTLATDLGFVTANVQAALEGADVLILEANHDPEVLRQGIYPWHLKRRILSNRGHLANSDAAWALIRMQKRPEKVFLAHLSEENNRPELAENTIQKILAQQGINIDLTVASQTEMVSWYLN
>NC_017068.1|WP_014423280.1|149056_150160_+|trypsin-like-peptidase-domain-containing-protein
MNKKKTSLMVAAMLALSAVSFSGCSAGTASDNSASVSESTQSSQAPRNDVKLSDARNTPAVRAAKMVGPAVVGITNKAVARDWFNNPVETQGVGSGVIFKADGYIVTNNHVVSGAKEIIVSLPDGRSLKGKLIGADELTDLAVVKVDAKDLPTAKFGDSDQIVVGEPAIAIGNPMGLEFQGSVTSGVVSAVNRTLDISDKLVKLIQTDAAINPGNSGGALVNADGEVIGINSAKLAANGVEGMGFAIPTNTVQSIIDEIMDKGYVARPYLGVSVFDPQTAGRYGYQLNIDKGVYIFQLTLNGPCGKAGLQRGDIILKVNDEEVNSVSDLRAKVAAHKVGDTVKVTFDRNGASRNVDVVLEEMPQDNR
>NC_017068.1|WP_014423281.1|150159_150639_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKITIVCAGKIKEKYLTAGIAEFMKRLKPFAQVEIREIHEEKMPDNPSAAEKEQVLIKEGEKLLKLVPEGSYLFVLDVFGKEKSSEELASSIDKLGLSGRSNITFLIGGAFGLSPAVRKAADELLSFSRMTFTHQMVRLLLVEQIYRAFKINRGEKYHW
>NC_017068.1|WP_014423282.1|150728_151715_+|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein
MRNICGLLALIFGMGGIYALTHEAGWAGLAMMAAMGISLYNGQRPQKQIRKLDVSQLAEMQAAAALEDWEKARLDYDRVETARRKIRDSQLSQQLALMQQEAARLLNYVEKHPERIAAANRFIHYYQDRAAGLCEQYMELEDTKLETSQVRQVKAQLKETLVSFDEAYNAEFTKIINNQLLDMEAELTVMKQSLEAEGIHDNAQKRTGEPVEINVQGGPPSTGIGRKKTPKRSGAVTKVGQRGLENVREKIATPDNLRKSVLMQKLIMSALAIVLGALGAHKFYQGKTKWGIAYVVLFWTLIPTFVSIVEGIRYFFMPVDDFYEQYYR
>NC_017068.1|WP_102013446.1|151754_152891_+|toxic-anion-resistance-protein
MKAKTNIASADVTPAELPSTEVMTAQVEQAVSSLSPEERAQVEKIKDELDLTDSTAILRFGAPAQQKIAAFSDNVLSQVRTKDSGPVGELLGTLVKQVREFEPEENKSFLTKIPLVGSLVKKGEDIKLGYDKLSTQVERIQGSLEQAKLKMMKDVALFDKLYAENLSYFKQLQLYIQAGEEKLTEMRESTLPKLRQQAAESGDPMAVQVVSDFEASVNRFEKKVHDLKISKTIAIQSAPQIRLIQNNDKALIDRVQTAIYSTIPLWKNQLVIALGLQAQQEVLRMQQAVSNTTNELLRRNAELLQQNSIETAQENERSIVDIETVREVNERLINTIEETIKIQQNGRAKRQAAEAELVQIEGRLKEALLKNSGRQEVH
>NC_017068.1|WP_014423284.1|152894_154877_+|PASTA-domain-containing-protein
MKKERREIQRRASFLAFLMLGLLVLTLGRYAWLQLVQGNSLGERMKAQVGQDYAIQSPRGTILDRNGREMAVSTMTKSLYIDPSHVENPQEVAENLAPLIGKSEQEILDDIAVGGGFVWVKRRMEQSEYEAVRQLIKDKNYISCMNFRDEAKRYYPNDALAANVLGFIGTDDKGLDGVEQALDPLLKGEVKETYITTDQQARPILDSIFSNKRRYMGDACKTVELTIDSGIQFIVEQELDRAIAENNPKAITCIVMDPKSGEVLAMASRPSYNPNKFWEYSPELWKNRAVSFIYEPGSTFKSVVAGAALQEKVVSPNQVFVDPGYVMVSGRRIQNWNGESFGTVTFTDVVKQSLNTGFAQVGLRLGAEKLMKYAKAFGFGEPTGIDLPGEESGILFKPEDMRDSDMATTAIGQSIAVTPLQLVTAVSAIANDGVLLKPHIVKSIRNADGSIYEERSKTEVRRVIDSATDKTLMGLLEQVVTSGGGAKAQVKGYRIGGKTGTAQKIREDGSGYMDGRYIASFCGFAPVEDPQLVVLVVIDDPGTGNFYGGQIAAPVAGRIFSQLFRHLHIEPSSDPFAGMEPAEKKQPVHKPARPFTGEVPEGKVVVPDFKGKSLREAAGLAADKGLSFQSEGSGYATGQSIEVNTLVDGGTTITVYFEPG
>NC_017068.1|WP_014423285.1|154906_155788_+|phosphoenolpyruvate-hydrolase-family-protein
MLRKNRQDILAGLRENLNKGKILTGLGTGMEEILQRIDKTNVDFVALYHTGRLQQAGRNLMSSLLSYDDANSLMQAKGEDILPEVKKTPLIAGVCGTDPFRKMDMFIAQLKEQGFNGVQNFPTVGIIDGRFRANLEGTDLGYQLEVDMIREAHELDMFTCPFVFDVEQGRAMTEAGADVLVIHLGIVTKAMLNAGNVPPLADCCALAEKIMQECKRIRPEVITLCCGQRMAAAEDAAYILECVPDLDGFFSFYPLKGEDTERNLQARVKSYKVLDKMKAFMARKRGAMGDGRL
>NC_017068.1|WP_014423286.1|155774_156965_+|phosphoenolpyruvate-hydrolase-family-protein
MADYDKSYILRRLRAEVNVGGHIIGAAVGSGMTAKLAAMGGADILLALSAGKYRIMGRSSLSSYFCYGNSNKMVMEMGKREIFPVVQDVPLLFGLMASDPYLKLYDYLKRIKESGFAGVVNSPTLALVDGSFREALEEEGSSYEREVAAINLANQLDLLTMAFVTSVEEADKMLAVGADIICVHMGLTAGGLLGAKRHLTISEARGIAQDIFDLCKAKNPECLRMVYAGPANTLMDMQYIYRNSDCQGYIGGSTFDRIPMEKSVYDTVSSFKQYCSPEAIGTLRDRKWGGNQLVDSMRRYIEEHYMDDVKLGDLALVAHMSASYMGGRFKKETGISFTDYLLQFRMGKAKALLKNDKNLQCKEVAAQVGYSDYVQFSKMFRKHVGISPREYQGIAD
>NC_017068.1|WP_014423287.1|157165_158665_+|tagaturonate-reductase
MERLNYEVLEKTGYPGYILKEAPVKMLQFGEGNFLRAFVDYFFDVANEKAAWHGKAILTQPRGKGKDKVFNEQEGLYTLYIRGNENGQKVDERRVISLVEKCYNPLEHFDKLLEVACLDTLEYITSNTTEAGIVYDPTAKLTDVPPASFPAKLAKLLYARYQAGKKGLIILSCELIDHNGRELQKIVLQHARDWQLGEGFVRWIEEENLFCSTLVDRIVPGEIRDAGEIAALNQINGYEDRLMDVGEVFGVWYIEGPKELEDRLPFKRAGLNVHVVPDIAPYKKRKVRILNGAHTGFALGSFLAGKDIVRDCMNDDVIRAFMNHMLYEEVIPILPLDQQDCEKFAASVADRFNNPFMEHQLLSIALNSTAKWKARDMGSLLEYRKKFGKLPKSLVMTLAAYIAFYSTDIQARQEKALLCRRPQGDIYPVQDDDWVLDFYYEHRHSDDAVLVHDVLAYEKMWGCDLTQLPGLEMQVLKDLQLIRQKGTKKAFASCLLACA
>NC_017068.1|WP_014423288.1|158676_160164_+|altronate-dehydratase
MDRIKAVRIAAEDNVAVALTKIDTGECLQVGDVEVTACEEIPQGHKIALQSVAENENIIKYGYPIGHAAQDISPGCWVHTHNLRTNLKGEIEYVYHPAVHDLPEQPAREFAGYLRPDGRAGIRNEIWIIPTVGCVNDVVLKLARDNQDLLGEHIDGIHAFTHPFGCSQTGADHAQTRKLLAALVNHPNAGGVLVVHLGCENCTHEQFVEELGAFDPERVRFLNCQQAEDELVAGRQLLQELTAYASRFRRQSLPASKLVVGLKCGASDGLSGITANPTVGRFSDLLLSQGGSTILTEVPEMFGAEGILLGRCRNRQLFDKAAAMLNGFKDYFLSHHEVVYDNPSPGNKQGGITTLEDKSCGCVQKGGTAPIEDVLGYGEQVKKQGLNLLYGPGNDLVSSTALAAAGAALILFTTGRGTPFGSPVPTVKIATNSRLAQHKPHWIDFNAGTVAEGEALDTAGGRLLDKVLQVAGGELTCNEKNGYRQISIFKDGVVL

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Crispr_ID: NC_017068_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017068_2

228232-228404

Orphan

Consensus_repeat	Method
TTCTGTTCCGAATGCGGCAAGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017068_2

>merge|NC_017068|2|228232-228404|CRISPRCasFinder
TTCTGCTCGGAATGCGGTGCGGCCAAACCGGATGATGGCTGGACCTGTGAATGCGGGGCCAAGAATACGGGCAAATTCTGTTCCGAATGCGGCAAGCCACGTCCTGCCGGAGACTGGGTCTGCAGCTGCGGAGCGAAGAACAGCGGCAAGTTCTGTGCCGAATGCGGCAAGCC

>NC_017068|2|2|228232-228404|CRISPRCasFinder
TTCTGCTCGGAATGCGGTGCGGC	CAAACCGGATGATGGCTGGACCTGTGAATGCGGGGCCAAGAATACGGGCAAA
TTCTGTTCCGAATGCGGCAAGCC	ACGTCCTGCCGGAGACTGGGTCTGCAGCTGCGGAGCGAAGAACAGCGGCAAG
TTCTGTGCCGAATGCGGCAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017068.1\|WP_041914486.1\|216837_217752_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_017068.1\|WP_014423352.1\|231932_232316_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
NC_017068.1\|WP_158645762.1\|233889_235458_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|185272
NC_017068.1\|WP_014423340.1\|217755_219072_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|376670
NC_017068.1\|WP_014423347.1\|226015_226855_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NC_017068.1\|WP_014423341.1\|219102_220038_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NC_017068.1\|WP_014423343.1\|220862_222152_+\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014423355.1\|235495_236797_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NC_017068.1\|WP_065813987.1\|236819_237776_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NC_017068.1\|WP_014423349.1\|228444_229554_+\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014423344.1\|222223_224170_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237028
NC_017068.1\|WP_014423345.1\|224171_224951_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NC_017068.1\|WP_041914490.1\|239651_241529_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213026
NC_017068.1\|WP_014423346.1\|225144_225960_+\|3D-domain-containing-protein	unknown	unknown	gnl\|CDD\|270620
NC_017068.1\|WP_014423342.1\|220041_220839_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NC_017068.1\|WP_014423338.1\|216001_216805_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_017068.1\|WP_041914489.1\|237781_239632_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133056
NC_017068.1\|WP_014423353.1\|232334_233183_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NC_017068.1\|WP_050992724.1\|229570_230413_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377378
NC_017068.1\|WP_014423351.1\|230537_231554_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530

Protein	Function_ID	Function_description	E-value
NC_017068.1\|WP_041914486.1\|216837_217752_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	5.89189e-148
NC_017068.1\|WP_014423352.1\|231932_232316_-\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	1.77852e-80
NC_017068.1\|WP_158645762.1\|233889_235458_+\|translation-initiation-factor-IF-2	gnl\|CDD\|185272	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB.	0.00146134
NC_017068.1\|WP_014423340.1\|217755_219072_+\|YvcK-family-protein	gnl\|CDD\|376670	pfam01933, UPF0052, Uncharacterized protein family UPF0052.	1.93145e-144
NC_017068.1\|WP_014423347.1\|226015_226855_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	7.26628e-60
NC_017068.1\|WP_014423341.1\|219102_220038_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	4.81369e-74
NC_017068.1\|WP_014423355.1\|235495_236797_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	3.49852e-143
NC_017068.1\|WP_065813987.1\|236819_237776_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	8.60713e-28
NC_017068.1\|WP_014423344.1\|222223_224170_+\|methionine--tRNA-ligase	gnl\|CDD\|237028	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.	0
NC_017068.1\|WP_014423345.1\|224171_224951_+\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	3.29585e-116
NC_017068.1\|WP_041914490.1\|239651_241529_+\|hypothetical-protein	gnl\|CDD\|213026	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins. This family contains a hypothetical protein Ecf1 from Escherichia coli and its prokaryotic homologs. Although their biochemical properties remain to be determined, members in this family contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily.	1.5002e-11
NC_017068.1\|WP_014423346.1\|225144_225960_+\|3D-domain-containing-protein	gnl\|CDD\|270620	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues. This family contains the 3D domain, named for its 3 conserved aspartates, including similar uncharacterized proteins. These proteins contain the critical active site aspartate of mltA-like lytic transglycosylases where the 3D domain forms a larger domain with the N-terminal region. This domain is also found in conjunction with numerous other domains such as the Escherichia coli MltA, a membrane-bound lytic transglycosylase comprised of 2 domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, corresponding to the 3D domain and Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial LTs, which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond.	2.22558e-35
NC_017068.1\|WP_014423342.1\|220041_220839_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	1.15942e-58
NC_017068.1\|WP_014423338.1\|216001_216805_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.26922e-78
NC_017068.1\|WP_041914489.1\|237781_239632_+\|glycosyltransferase	gnl\|CDD\|133056	cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.	1.03865e-47
NC_017068.1\|WP_014423353.1\|232334_233183_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	3.52141e-162
NC_017068.1\|WP_050992724.1\|229570_230413_+\|TPM-domain-containing-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	5.25739e-20
NC_017068.1\|WP_014423351.1\|230537_231554_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	5.61638e-67

>NC_017068.1|WP_014423347.1|226015_226855_-|Cof-type-HAD-IIB-family-hydrolase
MSNKKIIFLDVDGTLVDYDNVLPESAVEAIRQARQNGHRVYISTGRSRAEVYQHIWDIGLDGMIGGNGSYVEDNGQAIMHQVLSAADSHHIVDWLHERGLEFFLESNNGLFASENFETAGEPLMQEYAYRKGQENARHLTVRDCFPEMIFGGELYRDDLNKISFILKSYQDFLAAKQEFAHLKLGTWGGAGEKALFGDIGPAGVSKDHAIDVLLKHIGADKADTIAFGDAKIDIPMFAYCARSVCMGNGGDEAKAAADLITDAVAEDGIYHAFQRLQLI
>NC_017068.1|WP_014423346.1|225144_225960_+|3D-domain-containing-protein
MSIKKIFRINHKEKKVMLCLMLAAMMMMTTGFTKTTLPDGWHQVTIVADGKTITTTTNHTNPAFILGKNGVKLSANDEYHLEKDGKNTKITVYRAVPVTVSYNGQTKSVMTSKQTVGDALIELGYNLEDVEASQGLDKKIQANMDIVLTDSAKKQAALQRMREEQMRPRVQTEMGMMAYSAAYTMEATAYLPTDGSGTGMTAMGIPAQRGVVAVDPRVIPLGSRVYIPGYGVAIAADTGGAIRGQKVDLCMETYGECMNFGRRSIEVYVLA
>NC_017068.1|WP_014423345.1|224171_224951_+|TatD-family-hydrolase
MAQFELVDTHTHLNDGKFAGSEAEVIQRAREAGVTRLINMGDTMKSSAKAVELAAQYEGVYAGVGIHPEEIYEITSAEDDQLAAWTQEKRVVAIGEIGLDYYWEKDEAKRELQRRMFIHQLDLARQLHLPVCIHDREAHGDTLAILKKEGKGLRGVLHCFSGSWEMAQEIYKMGWFIGVDGPLTYKNAAKLPEIVEKFPLERILVETDAPYLAPVPMRGKQNEPAFVTYVAEKVAEIRGISMEMVAKQTSINAEELYGI
>NC_017068.1|WP_014423344.1|222223_224170_+|methionine--tRNA-ligase
MSEKKPFYITTPIYYPSAKLHIGHAYCTTIADSIARFHRLAGDDVFFLTGSDEHGQKIQQKAEEAGIKPIEYTDKIVAGFQNLWQKLNISNDDFIRTTEKRHEKVVQEIFRRIYAKGDIYKGEYKGLYCTPCESYWTEHQLDENGCCPDCGRPVQEVSEEAYFFKMSNYQDRILNYIEEHPDFIQPVSRRNEMINFIKQGLEDLCISRTSFDWGIPVPMDEKHVIYVWFDALTNYLTPIGFLDDPEKFNKYWPANLHLVGKEIVRFHTIIWPCILMALDLPLPEKVYGHGWLIVDGDKMSKSKGNVIDPIGLIDEFGADAIRYFLLREINLGQDGNFSRDALIQRINSDLANDLGNLLHRTLNMVGKFQDGVLIAPQGESDIDKSLKADAAETVSYFAENMEKMELSLSIKKVWAFISRANKYIDETAPWALAKDETKKQELANVMYNLAESLRQISVLISPFMPITAERIWQQLNLPGKFADVQLDDIKTWGGIAGGHKVGTPEQLFPRIEVEKEETPAKAAKPAKEKKNKQEKQEKAAEENAEVSIDDFAKIHLRVVKVLSAEPVPKTEKLLKLTVDLGDEQREIVSGIAKHYEPADLVGKNVVMVINLKPAKIRGIVSHGMVLAASNGDDLQVLSVDMPVGSTVR
>NC_017068.1|WP_014423343.1|220862_222152_+|hypothetical-protein
MNVKRKILAVLAAGTLCFPQMAMARHAATSGATTVVHLDKVQPAPAQEEGTQTNLMQRIRGILSASEKEKEKEQEQKTAAVKRPAASLNQNLTRWDMVSRDEGGTLLFSDSPEYVTTNGILYQDSVQGDARVLFYHLNNSDEPKKLAVVLKNEYNGRNDVIITRSGNGTPSSDYLKVGKATQLEYFREEKSQKLSLPPGTARLIQEKMNMTILQPGELTYGVFDFHADHSVLVTVLMLDAYGDPVTAAEELPVLPKDEMRLRGTFKGMDRVMSAKKIYNPAEDGGVYFMLADDKVDKYRTGIDATDGSQVINYGNYGINYRLELPVDAGAVKYYLSPLGGVYAGAMRSFNTARTYTLFPTPGSRTYFGDRTEPESDEVQAKREAGSWYIARNTELASLGQSNGRGETVFEFSPPGASNLPVAIVMLPQK
>NC_017068.1|WP_014423342.1|220041_220839_+|polysaccharide-deacetylase-family-protein
MRYVKYGLGLLAFVLLVFISWLTLTPAPQGILVLEYHHICDEIGEDGAAYAVPVADFAQQLDYLRAEGYTTISMQDYMRAKKGKQELPDKPVILTFDDGYDDNYTTLLPMLEERGMKGTVYMITNSIGRKGYLSWNQLRDMQNRGMEIGSHTANHQPLTTLDREKQAEEMKLSKLLMEWNGLKTIFTFSYPNGAYDEDMPAMLKENEYLTAVTGDGGLNTFQTNPYLLQRINIPRPHLGLTEFKLRIFKAEALTKMGIKQHLLSE
>NC_017068.1|WP_014423341.1|219102_220038_+|DNA-binding-protein-WhiA
MPSFATEVKNELARLYYEDSCCRGAELAALLRMGATLTIGAGHTFGLNFTSKNAAVARKVLQLLKSEGENLRTEITVRRSRQLNKNNSYTVRAVPSRKVNELFQRIGFLHEDSLNMENDRGILKKQCCRIAYLRGAFQGGGSVNRPEAAYHLELVTGSYELGNLLHDLLRRMGFPAGFVDRKDAYVVYIKEGDSVIDFLGMVEADEAVESFEVARNVKEVREQVNRLVNCETANLQKAVDAAGRQLAVIREMEKTGRLAKLPPKLRAAAKARLENPDATLQELAEMLGISKSGMNHRMRKLKELAAQEERK
>NC_017068.1|WP_014423340.1|217755_219072_+|YvcK-family-protein
MHLLKWLYPGMKFKRWLLLFSAGVMLVSLGLALVFNYKYLDAIEEAIFQAVYLWKGTYDYSTTTIIGILVVVMGGVLMLAATRYVIRSVIMVLLPDNSERLVDIIYEKRRLGKGPNVAVVGGGHGLSVLLRGIKAATTNVTAVVTVADDGGSSGRLREEFGIIPPGDLRNCLVALADTEPLMEKLFQYRFKGETELAGHSFGNLFIAAMNEVTGDMEQALQESSKVLAVKGQVLPASKDHVRLDAIMEDGTVVEGESRIPEVHKRIKRVRLFPEKVQPVQSALDALTNADAIILGPGSLYTSIMPNLLVDGVADAIRKSKAIKIYICNVMSQPGETDGYTASMHAKAIIDHGGKGIIDYMLVNDAVISPDMQDYYASKGAYPVEVDEDAINALGVGFVKADIINENEVIRHDPDKLSKAVMNMVYHLQPSALKKFEVK
>NC_017068.1|WP_041914486.1|216837_217752_+|RNase-adapter-RapZ
MENTQAREDKFRLVIVTGMSGGGKTQACRYMEDLGYFVVDNLPPVFIPKFVELCKHAGDHVGKVVLVVDTRSREFFDTFIHVLDDMDKADVPYEMLFMDASDSCIIRRYKETRRRHPMAPSSRISDGIAKERERLSPARAKATYIIDTSELKKVELRDKIHRIFGNSDGEQMSINVLSFGFKFGMPLDADMVFDVRFLPNPFYIESMRHKSGAVPEVAEYIAKWPVTQDFVEHLDAMMDFLVPQYVKEGKSQLVIAVGCTGGMHRSVFIAKHIFDRLKDKGLPVKLEHRDLMKNDVWEHVREEC
>NC_017068.1|WP_014423338.1|216001_216805_+|Cof-type-HAD-IIB-family-hydrolase
MAIKLLATDLDGTLLRGGKPVSAGNIAAAQAAAKAGVVVTIATGRMYRAALPVAEALGLDVPIITYNGALIKSTSGKIYYEHYLDEDICCRIADFCAARNWYLQSYSGDELYYSDYGAFSKRYEISQKVIGEEIGYDGMKEKVSKMYKMLIITSGAEVTQEWMAELQAEFGDTIAMTQSAPDFIEIIAPGVSKAAGLQKLAELLDIDISETMAIGDARNDLPMLKAAGFSVAMDNAEDEIKAVTDAVTGNCDEDGWAQAVHKYILEQ
>NC_017068.1|WP_014423349.1|228444_229554_+|hypothetical-protein
MASNSVAYKCPNCSAPLDFKPGTQKITCDYCGTELDAAAIEELFRAKEDMAAQAAEKQDKKWDTAVAGGDWTAEEAAAFKTFVCESCGAEIVADGNTMATECCYCGHAVMIPQRFDGMLKPDYIIPFKKTKEEAKAALRKFYDGKWLLPSLFKTQNRIEAIQAMYVPFWLFDSEVEAFAEFKAEKHEVHETSDETVTTTFHYKCLRQGSMAFARIPVDGSEKMDDTYMESIEPFDYSEMVPFSNAYMTGFLADKYDVDAETSVPRADKRVQQSALDVLTDTVQGFDTYSCESSEVKKQSGAVVYAMAPVWIVTTRYEGKPYTFMMNGQTGKVVGSLPYDQTKSLLFAALAFVITLPIVYYVTKFLLNLI
>NC_017068.1|WP_050992724.1|229570_230413_+|TPM-domain-containing-protein
MKKIIMRLALVLVCMAVAWGAVLPAGSEAADQPRVEKKAAANGPASVELGAPVVDKASILTKAQVEKLTEKIKAVEEKHQVRIGIYTLKNLPSGMKAGKLANNVLDEHYAGGQNGSIVFLIAMGSRDWYISTDNTMRQRIVDGVGIDGLKDMFLEDLSDGNYAESFGAFVDGVDKYLTYYEETGEPYDPANEFSYTAAAVAVLLALFAAWAFRGGLISSMSNVNPASEASAYLTQGSFHLSRNQDTFLYTTVTRVAKSKNDDSSSSSCSDSSHGGGGGKF
>NC_017068.1|WP_014423351.1|230537_231554_-|LacI-family-DNA-binding-transcriptional-regulator
MVTIKQIAELCGVSRGTVDRVLNKRGNVKPEKEKLIVEMAKKLNYHPNPAGQALAARKKHPVLGVLIASEGVQFFDDVLTTMHHAADRYASYGLEVIWRSMKGFDAAEQCRIIDELKTQCRGLIINPVNDQQVIDKINECAADGLFVVTLNNDVEASRRHCYVGSDYLQGGRTAGALMKMICPAPLKAGVLLGSRNMLGHQQRLVGFQEVMEGYDFTLLGVEETADDDMQAYEAARRLIDDHPEINALFVVSSGGYGTARAIQAANRKDITIVAFDTIPSTIDMMQKGLIKAALYQHPHQQGRRAMQVMFDYLVNGSLPEQSAYIMRNEIRILENVAD
>NC_017068.1|WP_014423352.1|231932_232316_-|aspartate-1-decarboxylase
MLLNMLKGKIHCATVTEANLAYMGSITIDEELMEKAGILPNERVQVVDNNNGARLETYTIPGPRGSGVICLNGAAARLAQPGDIVIIMAYALFTEEEGRAHKPKVVMVDEQNKVREVRTVEYHGQTN
>NC_017068.1|WP_014423353.1|232334_233183_-|pantoate--beta-alanine-ligase
MLILRTVQEIKDYAAQQKAQGKTIGLVPTMGALHEGHLTLMRAARAKCDIVIASVFVNPTQFGPNEDYDAYPRQFAADCTKLESVGIDAVFHPEPAEMYPEGYCTYVTVEGDITHKLCGAQRPGHFRGVATVVTKLINLSRADEAFFGQKDAQQVTVIRRFVEDLNINVHINMVPIAREESGLARSSRNVYLSPAEKEAALVLSRSLKVAKHAYAAGERKISALENIVTEELHKEPMASIDYVKAYAYPSLKPLTEVSEDTLLAIAVKIGKTRLIDNVILSA
>NC_017068.1|WP_158645762.1|233889_235458_+|translation-initiation-factor-IF-2
MSAVGAAPAQIQPWVYDSMLELAAEGYLELPSRPLGNYSRQELSVMVGKALNAVEKNRTGTLADEYARITRLLVMDEVELKLAQEQEAVAVKRCGTAKAKAARAAEMYLRRSLQGQNRLEVMEPLKAKNDEAQAGLEYAARDYAEAQSRVKQRSRMLEYARKKQESLLTSLNGADGSSSGTELPDKSEQNAVLENAGRLRAEFLPELEANGSLDKISARQQLASNLPVKDVPDQAFKLDTELRVDSGRSSGDHGQGTRTRARVRLYPDYNIDNNWHIKGMVEWQKALSGPKYSKDGKVNFDRYYVSGNIGQVQTDIGAFGSLMAEGNIYDSKFEGVRLAAGKPVRYTLEAGKADYEGMKHTYDLAADYESAAYKVGAAYYHFAYDNDQKQYIYMGNYHHNLGIFDLGGMLLRGRESGNDGRTGYVFSLAYAPQNSWRPYTYNSWLKYYYQPRSTYVNHTMNGMAGAMSGRGGFKGWGWGCNYNLPDDWSLGLELYHLQDLDIGHSSNTIWGSVTKYFKNYRE
>NC_017068.1|WP_014423355.1|235495_236797_+|nucleotide-sugar-dehydrogenase
MDMLQKLENRETKLAVVGLGYVGLPLAAAFAEKFSVIGFDRNERKIERYKQGHDVTAEIGDKVLQNSAIEFTTDPKRLQEASFIVIAVPTPINGDKTPDLAPVKGATETVARQLAKDSIVVYESTVYPGVTEDICRPLLEDLSDNQDFKIGYSPERINPGDKKHRLQNITKIVSAEDADALQDVADVYGSIIDHIYKASSIRVAEAAKLVENTQRDINIAFMNELSMVFHEMGIDTEDVAKAMDTKWNALGFRPGLVGGHCIGVDPYYFIYEAENLNRHSQMISAGRRINNDMGKFVANEVVKVLLRSGVDASNANIYLLGMTFKENCPDTRNSRSVDIYNDLREYGLKVKAADPLADRQDFQREYGIELVEEDEIHNADCLVLLVAHEAYRQHTLAEWRSLYRKDEDPILIDVKSIYGREAAEEAGYTYWCL
>NC_017068.1|WP_065813987.1|236819_237776_+|polysaccharide-deacetylase-family-protein
MNFKKLGLMVFLCLAVVVGVLIYIRDNVVEKTEFIPDITDLTKNYLAGDEIEAAVAKRQEPDIKPAEVITTLQDGSDKVALVFDGMPERPLAARLLDVLAKHNAAAVFFVEGENVADTPEVMKLIRQAGQEVGNYTYVGLAAIEKRPVEEQLREICRAQKAVAMHDPLTPNLFRAPRTVYTDDLLKSVRAAGLEYAVKENVRFQPGHIHDLAAADAYVGTIAKGSIIAIPVSRPVEQKANDAAVREEKPAVDMKPTIKDDQSAVIPPQADLATELDLLLTALERRGLQAVFVNQFRKIHYIPADFPLPQPKSQGGNKQ
>NC_017068.1|WP_041914489.1|237781_239632_+|glycosyltransferase
MNKPRRDVLCREKPDRRLLSYVPDDSGERSNHDRRGGVDDAAEGEDYKKFQQADKQGQRYLVDYEVKLSCRHDGRERTLTAQAVDISATGMLLRLAAAKECPLQAADSVTLTFEITPGSMPEGYEMKIKGLKAECIRVDEQADGSVLCGVEFAKTLAQYATDKRQRYLLAASAFCLGVIALVIVLMRAESVVYFRFNRWLYLYSIIAATFLLSRYFIASFYRPVEIDPDFTPGVTVIIPCFNEENWIQNTIRSCINQDYPADKLEVIVVDDHSNDHSVDRIREAIEEIKAADTEAGGYHMADRIRYLVQPYNQGKREAMALGATEARHELLVFVDSDSFLEPFAVRNLVQPFRDKEMGGVSGRTDVANTYTNALTMMQSVRYYIAFRVMKAAESYFDAVTCLSGPLSCYRRDLVLKYADAWLNQKFLGQKATFGDDRSMTNFILRHNRTTYQDTAVCRTIVPNSYTMFLKQQMRWKRSWLRESLIGARYIWKKEPFMSLSFYMGLAVPIAAPVIVLYNLIYVPVMHRVFPVTFMVGMLLMALLMSMAQLFLRRSTTWIFGMWFCLYYEAVLLWQMPVAWFTFWKSTWGTRLTPADLEEMEKERRKKERKEKKRHEA
>NC_017068.1|WP_041914490.1|239651_241529_+|hypothetical-protein
MLALGDEAFSRRKNRWKRLRVIGEIIVVALLAFAVYNMFYSLDTYKPYDHNAVTASDKDTGFVALSYFGVDHIGDTSTLIGQKQLEKHLQELKRQGFVTITQQDIKDYYQQGRPLPEKALFLMFEDGRRDTAIFAQPILEKLNFKASMMSYGENVESHDLKFLKPSELEELEDSTYWELGTNGYRLEYINVFDRYHNYIGEIDPLRYAMLTPYLERDYNHYLMDYIRDKNGVPKESYGHMKRRISYDYEKLKDVYSSNLGKVPGAYVHMHGNTGKFANNPAVSAVNEKWIRELFPMAFNREGYCFNQRNSSLYDLTRMQPQPYWSINHLLMRIKYDINTPIEFVTGDTDRQNNWNLITGAAEVDKETYTLTTLPEGEALAEVRESSSLPDLKISTKLLGNAFGAQQIFLRSDAGRDNCLCVELLNDQLVVFEKLGGVRRDLYKEKIPVILGEKIPSVEENKKEAEIQENTAFARYATTKEQAEEYYGRAKNREAIPAATVADGAEPYEHSQSFHRRGDHKLVIDLKGDRLILTLDDKQIPEELTVSDTGHGSIFLGASWQGEAWSQRNLADDVYDAVFDKFTVTTNTGKDKEKVLFTTEFSGWDKFVFQAGELWDRVLFWFLRHA

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Crispr_ID: NC_017068_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017068_3

687037-687152

Orphan

Consensus_repeat	Method
GGCCTCTCACGCCAGGTTCACGGGTTCGAATCCCGTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017068_3

>merge|NC_017068|3|687037-687152|CRISPRCasFinder
GGCCTCTCACGCCAGGTTCACGGGTTCGAATCCCGTAGGCGTCACCATCGGCACCTTCGTCAAGCGGTTAAGACACCGGCCTCTCACGCCGGGTTCACGGGTTCGAATCCCGTAGG

>NC_017068|3|3|687037-687152|CRISPRCasFinder
GGCCTCTCACGCCAGGTTCACGGGTTCGAATCCCGTAGG	CGTCACCATCGGCACCTTCGTCAAGCGGTTAAGACACC
GGCCTCTCACGCCGGGTTCACGGGTTCGAATCCCGTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017068.1\|WP_014423758.1\|676659_677883_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NC_017068.1\|WP_014423761.1\|680275_681055_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NC_017068.1\|WP_014423768.1\|687292_687877_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NC_017068.1\|WP_014423771.1\|689139_690072_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380478
NC_017068.1\|WP_014423773.1\|691867_692329_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|376799
NC_017068.1\|WP_014423760.1\|680060_680255_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NC_017068.1\|WP_102013452.1\|692387_692885_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NC_017068.1\|WP_102013451.1\|682307_682904_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|280703
NC_017068.1\|WP_014423765.1\|683777_684689_+\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|200082
NC_017068.1\|WP_014423767.1\|685514_686972_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_017068.1\|WP_014423762.1\|681067_682321_+\|2-iminoacetate-synthase-ThiH	unknown	unknown	gnl\|CDD\|236425
NC_017068.1\|WP_050992789.1\|682965_683679_+\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NC_017068.1\|WP_014423770.1\|688372_688936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349951
NC_017068.1\|WP_014423769.1\|687873_688368_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_017068.1\|WP_014423775.1\|693141_693891_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_017068.1\|WP_014423759.1\|678059_679835_+\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_017068.1\|WP_014423772.1\|690088_691798_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_017068.1\|WP_014423766.1\|684854_685478_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NC_017068.1\|WP_014423332.1\|692912_693092_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NC_017068.1\|WP_014423776.1\|694021_694288_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943

Protein	Function_ID	Function_description	E-value
NC_017068.1\|WP_014423758.1\|676659_677883_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	5.01101e-124
NC_017068.1\|WP_014423761.1\|680275_681055_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.27503e-136
NC_017068.1\|WP_014423768.1\|687292_687877_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	2.85352e-55
NC_017068.1\|WP_014423771.1\|689139_690072_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	1.43461e-72
NC_017068.1\|WP_014423773.1\|691867_692329_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	1.57507e-62
NC_017068.1\|WP_014423760.1\|680060_680255_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	6.58988e-20
NC_017068.1\|WP_102013452.1\|692387_692885_+\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	7.45104e-24
NC_017068.1\|WP_102013451.1\|682307_682904_+\|thiamine-phosphate-synthase	gnl\|CDD\|280703	pfam02581, TMP-TENI, Thiamine monophosphate synthase. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production. While TenI shows high sequence similarity with thiamin phosphate synthase, the purified protein has no thiamin phosphate synthase activity. Instead, it is a thiazole tautomerase.	3.18038e-52
NC_017068.1\|WP_014423765.1\|683777_684689_+\|serine-acetyltransferase	gnl\|CDD\|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	1.06693e-53
NC_017068.1\|WP_014423767.1\|685514_686972_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_017068.1\|WP_014423762.1\|681067_682321_+\|2-iminoacetate-synthase-ThiH	gnl\|CDD\|236425	PRK09240, thiH, 2-iminoacetate synthase ThiH.	0
NC_017068.1\|WP_050992789.1\|682965_683679_+\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	2.13356e-104
NC_017068.1\|WP_014423770.1\|688372_688936_+\|hypothetical-protein	gnl\|CDD\|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	0.000250808
NC_017068.1\|WP_014423769.1\|687873_688368_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	2.77998e-81
NC_017068.1\|WP_014423775.1\|693141_693891_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.39163e-74
NC_017068.1\|WP_014423759.1\|678059_679835_+\|cache-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.01707e-60
NC_017068.1\|WP_014423772.1\|690088_691798_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.14446e-40
NC_017068.1\|WP_014423766.1\|684854_685478_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	8.65638e-62
NC_017068.1\|WP_014423332.1\|692912_693092_+\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	2.92397e-31
NC_017068.1\|WP_014423776.1\|694021_694288_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.32147e-18

>NC_017068.1|WP_014423767.1|685514_686972_+|glutamate--tRNA-ligase
MSQKVRTRFAPSPTGYMHIGNLRTALYGYLYAKAQKGDFILRIEDTDRTRYVADAVDFINRTLEMAHIVPDESPSLGGDCGPYVQSERMDIYKKYAEELVKTGHAYYCFCDPDEDHSAGEFGGYDRTCRDLDAAVIEEHLKNGDPYVIRQKMPLDGSTTFFDVLHGNITIPNSELEDQVLLKRDGMPTYNFANVIDDHLMSISHIMRGAEFITSTPKYILLYEAYGWEVPTFIHLAPVMGKNEDGSVSKLSKRHGATSFDDLVKLGYLPEAITNYVALLGWNPKTTNQEIFSMEELIAHFGLDGLSKSPAVFDYDKLGWINGEYFKAMSDEEFAKRAHEFVEDLPDYLEKNWQTVAALLKTRVQRFSDVKDEIDFLVEMSAFDANLYNNKRNKVNPEKAAELMPKLVELLENVSEEDWYNDSLYAKLEEYIAANELKKGLVMWVLRIGVAGKSVTPGGATEILSVLGKENSLARLKKSLANLTAE
>NC_017068.1|WP_014423766.1|684854_685478_+|dihydroxyacetone-kinase-subunit-L
MSRIKDAFDAVAEAIIAQKDYLSDIDAKAGDGDHGLNMARGFRAAKEALDDMDDTTQIGPVLKKIGKSLIQNVGGAAGPLYGAAFVKASEACDEETRMNIASFEKLLAAAITAIQERGRAEQGDKTILDALIPIHDCFLPENVEDKNLFEVLQEASKAAGDGVNYTKEIPAKKGRASLVGERSIGVEDPGAVSTMLMYRALYQFLKR
>NC_017068.1|WP_014423765.1|683777_684689_+|serine-acetyltransferase
MQDIIGQDIKGITQDILADYDKERHIDKLDVFNQPDTKVIYELIQELTRVAYPGYVKDNHYRIYDIRNNLSMVIEDIAFRLNKQIAIALRYGKKPDDETLMATREEAQRITLEFLRQIPKIREYLATDVEALFDGDPAAESADEIIFAYPGLYAVTVFRFAHELYKLGVPVIPRIMTELAHSKTGIDINPGATIGKYFMIDHGTGIVIGETTEIGEHVKVYQGVTLGALSTSGGRKLFNKKRHPTIEDHVTIYSGASILGGDTVIGKGSVIGGNVFLTHSVPPETRVSVKNQELRYNMGSCDL
>NC_017068.1|WP_050992789.1|682965_683679_+|HesA/MoeB/ThiF-family-protein
MLPDFGEAGQKKLKAARVLVIGAGGLGSPAAFYLAAAGIGTVGLADFDHVELSNLQRQLLHTTADLGRRKIDSGRETLQALNPALQVPLYDEPVTEEYLAAILRSEHYDMVVDAVDDAKTKFAINDACVQTKTAFVHGGILKYQGQLMTYVPGSPCLRCLFPEAQAARGGKNGVLGAVPGVIGSLQATEVIKYLLGMGNLLAGRLLTYDSLPLSFRILNIPKRAECSCQDIDRSGRE
>NC_017068.1|WP_102013451.1|682307_682904_+|thiamine-phosphate-synthase
MSMSDMDWKDILAVTNRHLCTGNFLQQVEKVARRKPKALILREKDLPEQDYRQLATEVQKICRQYDVPLHLHNFPQAAAGLSAVGLHLPLPKLRERTTEARQRWKVLGTSCHSVAEVQEAVALGCTYIVAGHIYATDCKRGLPGRGLDFLRAACQAASTVPVYAIGGITPERLPAVLAAGAAGACVMSGMMKDSEWWR
>NC_017068.1|WP_014423762.1|681067_682321_+|2-iminoacetate-synthase-ThiH
MAENNFLIDSARLGEKALQRKHELENNPASRKSPLEYFPDMEQLDSSVERAVLTEMEDYDCHRYTAVDVRRALNHKTCSKEDFKALLSPAAAPFLEEMARRAQRETGRHFGNTVYLFTPLYIANYCENYCVYCGFNCYNDIQRLQLDEEQIEHEMQVIAQSGMEEILLLTGESKAKSSLEYIGRACELARKYFRNVGLEIYPVNTDDYRYLHQCGADYVTVFQETYNLEQYEKLHLLGHKRVFPYRFAAQERALRGGMRGVGFSALLGLADFRKDALATALHVWHLQRRYPWAEFSLSCPRLRPIVNNDKITPQGVGERELCQVLCAYRIFLPYAGITVSSRETASFRNGIAKICATKISAGVSTGIGDHEEKYEGHQEGKAGDEQFEIADNRSITTMYADMSGEGLQPVLNDYVYV
>NC_017068.1|WP_014423761.1|680275_681055_+|thiazole-synthase
MENNMEDCLELGGHRFHSRFILGSGKYSLQLIEAAVQDAGAEIVTLAVRRANTQDKENILDYIPKNVTLLPNTSGARNAEEAVRIAKLARAMGCGDFVKIEIMRDSKYLLPDNAETIRATEILAKEGFTVLPYMYPDLNVARDLESAGAAAVMPLASPIGSNKGLATKEFIQILIDEIDLPIIVDAGIGAPSQACEAMEMGAAAIMANTALATAGNLPLMASAFKDAITAGRKAYLAGLGRVLTRGAEASDPLTGFLHD
>NC_017068.1|WP_014423760.1|680060_680255_+|sulfur-carrier-protein-ThiS
MVTINGSPEAAAGVSLADWLDQAGYSGRMIAVEYNGEIISAEQYPQVCLHDGDVVEIVCFMGGG
>NC_017068.1|WP_014423759.1|678059_679835_+|cache-domain-containing-protein
MSLKGRFVLMVIGIAVLTAVCVSAAFIVSLKSESERQVTAVRQTLTQDVERELKIQTETAISLIKQVYDRQQKGELTEEQARKEAADLVRNLRYDDGKGYFWVDTYEGVNVVLLGRDTEGKSRINLTDPSGKHFIKEMIENGRKDGGGYTDLMFAKPNETTPLPKRNYTASFAPYQWVLGTGVWIDYIDSRVAEEQAAADDAFKSTLINTLLINVVLLAIFSGLGLLAAKSIVGPLHIVTNRLGIMATGDLREDPSLEDVFHRSDEIGEMSRALHTLQTHVSEMMRQIIDSSQQVAASSLQLTNSSEQSAEVSGTVADSIVNVAGSCSEQFTEVENASSNIESLSESMERFKKTIEHAGKVVAEAKGQADSGEKAVTGAVRQMELIEQSVSQSAQVIEELGKESDKIGTIVDAISQIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEQSSSSAGEISNLIGSIQDKARDAVSVMHDGVSQVQNGVGAVNGAGNSFKDIAGMVEQVVEETAEMERTVVSLANNTSTIYAAVNKISEMSRNVAAEAESVSAATEEQTATMNEIASASRRLTEMANGMESSVEKFKI
>NC_017068.1|WP_014423758.1|676659_677883_+|dicarboxylate/amino-acid:cation-symporter
MNLSIKIFIALVLSVVVGLIAGEPALPFINWWIAPIGTMFINLIKMMIVPVVFFSLVVGMTSLGDTKKLGRIGAKTVVLYLLTTAVAILIGFGVAGILSPGTGISLASDATYKVKEAPGLMQVLVAMIPANPIDAMAKAQILPVIVFSLFVGIGIVHVGGERAQLLMKFFDAAAEVSYKIIGIVMQFAPIGVFALLLPVVAKNGPSVLLPLMSVIACVAIGCVIHAVVVYSSLARLWGGHTPMEFFRGMSEAMMIAFTTCSSAAALPVNMKNCQEKLGVSREVSSFVLPLGATINMDGTALYMGVYSLFIANVFGVDLTMGQILMIVLTGTLASIGTAGVPGAGLIMLAMVLQTAGLPLEGLALVAGIDRVLDMFRTCLNITGDAAVTIVMDQEEKKYDSNIAGAKV
>NC_017068.1|WP_014423768.1|687292_687877_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIITGSARGCRLKAPKGAEVTRPTADRVKESLFNILGDFVPGRKVLDIFAGTGNLGLEALSRGAQSAVFVDRATAKLIEENLRLTRLAEKGTVRGGDVFAELSRQAAGGAEFTLIFCDPPYHQGLWQRALCQIDQSEGLMAEAGILVVEHGADENDYPELDRLQLVHNRRYGHTTQLSFFQWRSYMEAEEDDV
>NC_017068.1|WP_014423769.1|687873_688368_+|pantetheine-phosphate-adenylyltransferase
MRRAVCSGSFDPVTLGHVDVFERASRMFDELIICVFRNVEKKGFFPVEQRVQLIEEAVAHLPNVRVTAFDSLITDFMTAQDAKIIVRGVRSVKDLEYEENEAYMIKHLNPEIDTVFLLTRPDLSYVSSSGVREVFRFGGSINGLVPACVEQAMLDRKKADGERK
>NC_017068.1|WP_014423770.1|688372_688936_+|hypothetical-protein
MSVRETLDRIENMVVGASRVPFTEKTLINDNELVHYVEELRNDLPKELNRADEIMRDRDQILKAAEEEAEDIRKKAKEYAESITEESEIVKQAREKARAIVQQAQDQEREIMERTQANATQLQSNADAYANQVFDQLISHVNGTFQGVRQAEAGLQQALNVLQQAKTQMNQQAARQQEQQFVPAKAE
>NC_017068.1|WP_014423771.1|689139_690072_+|sugar-ABC-transporter-substrate-binding-protein
MGKMQKLALFLLMLMVSISLLGCGGSEVSSGKVYFLLHNDAGGGFNEDLKQALLKKAQEGGVAIEVLDGKGDTNLQLDQMNEVIASKAGAVVLAAMDGDAIIPAVKKANEAGIPIIRVSRDINDGQFVSCLSDDREAGKMQGEFMAKNLPPNAQILYMSGEMTQGAAIKRWEGFKEACLDKRPDVKLLASADCGWNKTDALKQMTLWLKIYPQIDGVVGANDEMVLGAIQSLKDNNRLNGVWTSGVDATDNALKAVQAGLMSQTVKQDAVGQGEGAFQLVQAALTGNKSAADVVVPFVSITRDNIGQFLK
>NC_017068.1|WP_014423772.1|690088_691798_+|methyl-accepting-chemotaxis-protein
MLKHLAVKAKILLLAGMMLIIVAVIAAVGVYSNNEAKKALDEMYNYNIMSSQFLNDANNRVRTIDVDVSYILQQDYPKESRQVLLDDILNRIKDIRGDAEELKKIDRSDKAQKALAELSQNLDTAEAKVAAVGNMGDTPADKEKIMANLSSTKVIASNLAILTPDNVAQSKLLFEAFTIGYGRTIKAFIGIIVLGLILGLAVGMFIARNIAAPLQESVSHLNAVADGDLTQDMPAELLDRQDEVGMVVQALEKMQQSLHGLLKNVTVEAEKSVDMVLEVQQLVGDLNDSAYDMSAVTEEMSAGMEETAASTSNMQNLSDKLREQIHGSADEAKKSEGYTEEITKRANGLKASMEQSSSEARRIYADTKTSLEEAIESAKVVDNITSLTQEITDIAEQTNLLALNAAIEAARAGEYGRGFAVVADEVRKLAEQSHDTAEKIRTLTSQVTGSVQNLSDGAFSLLNFMDTNVNNDYDMLNKTAVQYKEDADYVNEFARKSSAAAQQLSEEVEVMSRAMEEIAKATHEGAVGNTTVAEKVTVVADKANEILEKMNASKQGAENLKKHVAKFKV
>NC_017068.1|WP_014423773.1|691867_692329_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIAMANDHAGTRLKEEIKAYLESEGHEVKDFGTYDEESCDLSDFVLPAATAVAKGECDRGVFVDGVGYGSAMIANKLRGIFAVVCQDPFCAALARQHNDSNVLCLGGKIIGGAIAMETVKTWMHTDPLTAEKYVRRVEKVKKIDAEFTVAVK
>NC_017068.1|WP_102013452.1|692387_692885_+|DUF177-domain-containing-protein
MNINIAELQTDLGRELPFDFSVTAAEIDAESDDYKFLDPIKVTGTVVYTGMRWRVSGRIEVVKTFVCNRCLADCREEQVHEFSEDFTRDEGEDDSINIFSGDLLDIEDLVHDTLLAAQSLSNICKPDCKGLCPKCGHNLNEGDCGCDRFVPDPRMAALQQLLNKD
>NC_017068.1|WP_014423332.1|692912_693092_+|50S-ribosomal-protein-L32
MAVPKRKMSKARRDQRRANWKLEAPGFVACPQCHEPKMPHHVCPECGYYDGKEVVAAAE
>NC_017068.1|WP_014423775.1|693141_693891_-|DeoR/GlpR-transcriptional-regulator
MHIRHSKLLSLVNQHNRIAVTELAKALDVSEVTIRKDLNILEKKGLLRREHGYARLTTSDDVGNHLSFNYEAKLRIARRAAESVHNGETIMIESGSCCALLAEEIAANRRDVTIITNSAFIADYIRKYPQVRVILLGGEYQKESQVMVGPMIRSCVRDFYVSKFFVGTDGLNDLGFMSNDLMRAEATRMMAERAEQTIVLTESAKFKTHGTVKLLPFDKVAALYTDDLADSETMSQLHATGIHVYPVGK
>NC_017068.1|WP_014423776.1|694021_694288_-|30S-ribosomal-protein-S20
MPNIKASILSVKSDAKRRAKNAAEKSRVRTASRRVLDAVEAGNAEEAKSLLTAACKTIDMAAANHVFHKNCAARKKSRLARKVNALAK

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Crispr_ID: NC_017068_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017068_4

1013714-1015844

TypeI-F

I-F

Consensus_repeat	Method
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CRISPRCasFinder
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CRT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	PILER-CR
GTGTTCCGCCGTATAGGCGGCTTAGAAA	PILER-CR

35 spacers

cas3f,cas1,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NC_017068_4

>merge|NC_017068|4|1013714-1015844|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTGTTCCGCCGTATAGGCGGCTTAGAAAAAAGAAAAGATTAATCATGTCTCTGCCGTTTCGTGTTCCGCCGTATAGGCGGCTTAGAAATGTAGCTTATCAGCCACTTTCTGCTGGCCTTTGTGTTCCGCCGTATAGGCGGCTTAGAAATGAACAACGTTCGCTCGAACTCGAACAGCAACGTGTTCCGCCGTATAGGCGGCTTAGAAATCTTGCCTTTACGCGGCTACTATCATTGACACGTGTTCCGCCGTATAGGCGGCTTAGAAAAACAGCCCCCACCGTGCCTGTGACCTTGCCTGGTGTTCCGCCGTATAGGCGGCTTAGAAAAATCCCTACTCCTGCCATAAATATGCCATACCGTGTTCCGCCGTATAGGCGGCTTAGAAAGTAATAATCAAGCGGTAAAAAGTCAATCCTGCGTGTTCCGCCGTATAGGCGGCTTAGAAATGTTGAACCATCACCCAACCACACACCGAGAAGTGTTCCGCCGTATAGGCGGCTTAGAAATTGCGAATCTTCGTCCATGAATTGCAATTTATGTGTTCCGCCGTATAGGCGGCTTAGAAAAGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGTGTGTTCCGCCGTATAGGCGGCTTAGAAATTTCTCGCCTATCGCATGATAAGCCGCCTTAAGTGTTCCGCCGTATAGGCGGCTTAGAAATATCGCGATGATTGATGCGAGCGTCAATATTGGTGTTCCGCCGTATAGGCGGCTTAGAAACATCCAAAAGAAAATCGTCAGGACAACGTGGGGGTGTTCCGCCGTATAGGCGGCTTAGAAACACTATTAATCGCTTGTTGAATAGCCGCCGTATGTGTTCCGCCGTATAGGCGGCTTAGAAAAACACTGACGGGCAGCTGAAAAGCAAAACTATGTGTTCCGCCGTATAGGCGGCTTAGAAATGTCCAACCATTAAACAGACATTTTTCGACCAGTGTTCCGCCGTATAGGCGGCTTAGAAAAAAGCCTGCAAAGCATTGCTCCACTCACCAAAGTGTTCCGCCGTATAGGCGGCTTAGAAACTTCAGCGCATTTTTGCTGACACCCGCGAGGGGTGTTCCGCCGTATAGGCGGCTTAGAAATGCAACTTTCGATGCAGCAGCATCAGCCCATCGTGTTCCGCCGTATAGGCGGCTTAGAAATGCTGCAACCATTTCTTATATCTTTTCCGACAGTGTTCCGCCGTATAGGCGGCTTAGAAAGTAATCAGACGGCCTACAATGCGGATGATAATGTGTTCCGCCGTATAGGCGGCTTAGAAAAAAATCGGAAAAGTTTGCATTAGGTGCAGATAGTGTTCCGCCGTATAGGCGGCTTAGAAAGATTACCTCACGCCAGTCTGCGACGTGATAAGTTGTTCCGCCGTATAGGCGGCTTAGAAAGCATCCCGTGGTTCGGTCGTCGCTTGGCATCCGTGTTCCGCCGTATAGGCGGCTTAGAAATTGCCGTTCAGGGACAGAGTTGTTCAATGGGCGTGTTCCGCCGTATAGGCGGCTTAGAAATGGATAAGCGAGTCCAAAATAAAGCGGGAATGGTGTTCCGCCGTATAGGCGGCTTAGAAATATGCAACGGCGGTGGAAATTCTGGTTGAGTAGTGTTCCGCCGTATAGGCGGCTTAGAAAATTGTTTGCTCGACTTGATAAACAGGCATTATGTGTTCCGCCGTATAGGCGGCTTAGAAAAGTATGGCTGAAATCATGGGCTTCCAAAAAGCGTGTTCCGCCGTATAGGCGGCTTAGAAAAAGAGCAGATGGAGAGGGTTCGATCGGAACGCGTGTTCCGCCGTATAGGCGGCTTAGAAATTCGGCTCCGGCCGTACCATTGACCTGCCTGCCGTGTTCCGCCGTATAGGCGGCTTAGAAATAATGTGCTTTTTTTGTCTGTCATTTTCCCCGGTGTTCCGCCGTATAGGCGGCTTAGAAAACACATCAACTTGAGCACCACATTCGCACCTGGTGTTCCGCCGTATAGGCGGCTTAGAAATTTACGCTTTGGGCTGTGTCAGAGTCCAACGAGTGTTCCGCCGTATAGGCGGCTTAGAAAAATTGCCACCCGATAACGGGATACGTTTAACAGTGTTCCGCCGTATAGGCGGCTTAGAAA

>NC_017068|4|4|1013714-1015844|CRISPRCasFinder
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAGAAAAGATTAATCATGTCTCTGCCGTTTC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTAGCTTATCAGCCACTTTCTGCTGGCCTTT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGAACAACGTTCGCTCGAACTCGAACAGCAAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TCTTGCCTTTACGCGGCTACTATCATTGACAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AACAGCCCCCACCGTGCCTGTGACCTTGCCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATCCCTACTCCTGCCATAAATATGCCATACC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATAATCAAGCGGTAAAAAGTCAATCCTGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTTGAACCATCACCCAACCACACACCGAGAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCGAATCTTCGTCCATGAATTGCAATTTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTCTCGCCTATCGCATGATAAGCCGCCTTAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATCGCGATGATTGATGCGAGCGTCAATATTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CATCCAAAAGAAAATCGTCAGGACAACGTGGGG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CACTATTAATCGCTTGTTGAATAGCCGCCGTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AACACTGACGGGCAGCTGAAAAGCAAAACTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTCCAACCATTAAACAGACATTTTTCGACCA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAGCCTGCAAAGCATTGCTCCACTCACCAAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CTTCAGCGCATTTTTGCTGACACCCGCGAGGG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGCAACTTTCGATGCAGCAGCATCAGCCCATC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGCTGCAACCATTTCTTATATCTTTTCCGACA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATCAGACGGCCTACAATGCGGATGATAAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAATCGGAAAAGTTTGCATTAGGTGCAGATA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GATTACCTCACGCCAGTCTGCGACGTGATAAG
TTGTTCCGCCGTATAGGCGGCTTAGAAA	GCATCCCGTGGTTCGGTCGTCGCTTGGCATCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCCGTTCAGGGACAGAGTTGTTCAATGGGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGGATAAGCGAGTCCAAAATAAAGCGGGAATG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATGCAACGGCGGTGGAAATTCTGGTTGAGTA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ATTGTTTGCTCGACTTGATAAACAGGCATTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGTATGGCTGAAATCATGGGCTTCCAAAAAGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAGAGCAGATGGAGAGGGTTCGATCGGAACGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTCGGCTCCGGCCGTACCATTGACCTGCCTGCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TAATGTGCTTTTTTTGTCTGTCATTTTCCCCG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ACACATCAACTTGAGCACCACATTCGCACCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTACGCTTTGGGCTGTGTCAGAGTCCAACGA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATTGCCACCCGATAACGGGATACGTTTAACA
GTGTTCCGCCGTATAGGCGGCTTAGAAA

>NC_017068|4|1|1013714-1015844|CRT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAGAAAAGATTAATCATGTCTCTGCCGTTTC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTAGCTTATCAGCCACTTTCTGCTGGCCTTT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGAACAACGTTCGCTCGAACTCGAACAGCAAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TCTTGCCTTTACGCGGCTACTATCATTGACAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AACAGCCCCCACCGTGCCTGTGACCTTGCCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATCCCTACTCCTGCCATAAATATGCCATACC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATAATCAAGCGGTAAAAAGTCAATCCTGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTTGAACCATCACCCAACCACACACCGAGAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCGAATCTTCGTCCATGAATTGCAATTTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTCTCGCCTATCGCATGATAAGCCGCCTTAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATCGCGATGATTGATGCGAGCGTCAATATTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CATCCAAAAGAAAATCGTCAGGACAACGTGGGG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CACTATTAATCGCTTGTTGAATAGCCGCCGTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AACACTGACGGGCAGCTGAAAAGCAAAACTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTCCAACCATTAAACAGACATTTTTCGACCA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAGCCTGCAAAGCATTGCTCCACTCACCAAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CTTCAGCGCATTTTTGCTGACACCCGCGAGGG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGCAACTTTCGATGCAGCAGCATCAGCCCATC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGCTGCAACCATTTCTTATATCTTTTCCGACA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATCAGACGGCCTACAATGCGGATGATAAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAATCGGAAAAGTTTGCATTAGGTGCAGATA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GATTACCTCACGCCAGTCTGCGACGTGATAAG
TTGTTCCGCCGTATAGGCGGCTTAGAAA	GCATCCCGTGGTTCGGTCGTCGCTTGGCATCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCCGTTCAGGGACAGAGTTGTTCAATGGGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGGATAAGCGAGTCCAAAATAAAGCGGGAATG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATGCAACGGCGGTGGAAATTCTGGTTGAGTA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ATTGTTTGCTCGACTTGATAAACAGGCATTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGTATGGCTGAAATCATGGGCTTCCAAAAAGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAGAGCAGATGGAGAGGGTTCGATCGGAACGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTCGGCTCCGGCCGTACCATTGACCTGCCTGCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TAATGTGCTTTTTTTGTCTGTCATTTTCCCCG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ACACATCAACTTGAGCACCACATTCGCACCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTACGCTTTGGGCTGTGTCAGAGTCCAACGA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATTGCCACCCGATAACGGGATACGTTTAACA
GTGTTCCGCCGTATAGGCGGCTTAGAAA

>NC_017068|4|1|1013774-1014583|PILER-CR
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTAGCTTATCAGCCACTTTCTGCTGGCCTTT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGAACAACGTTCGCTCGAACTCGAACAGCAAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TCTTGCCTTTACGCGGCTACTATCATTGACAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AACAGCCCCCACCGTGCCTGTGACCTTGCCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATCCCTACTCCTGCCATAAATATGCCATACC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATAATCAAGCGGTAAAAAGTCAATCCTGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTTGAACCATCACCCAACCACACACCGAGAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCGAATCTTCGTCCATGAATTGCAATTTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTCTCGCCTATCGCATGATAAGCCGCCTTAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATCGCGATGATTGATGCGAGCGTCAATATTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CATCCAAAAGAAAATCGTCAGGACAACGTGGGG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CACTATTAATCGCTTGTTGAATAGCCGCCGTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAAAACACTGACGGGCAGCTGAAAAGCAAAACTATGTGTTCCGCCGTATAGGCGGCTTAGAAATGTCCAACCATTAAACAGACATTTTTCGACCAGTGTTCCGCCGTATAGGCGGCTTAGAAAAAAGCCTGCAAAGCATTGCTCCACTCACCAAAGTGTTCCGCCGTATAGGCGGCTTAGAAACTTCAGCGCATTTTTGCTGACACCCGCGAGGGGTGTTCCGCCGTATAGGCGGCTTAGAAATGCAACTTTCGATGCAGCAGCATCAGCCCATCGTGTTCCGCCGTATAGGCGGCTTAGAAATGCTGCAACCATTTCTTATATCTTTTCCGACAGTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATCAGACGGCCTACAATGCGGATGATAAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAATCGGAAAAGTTTGCATTAGGTGCAGATA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GATTACCTCACGCCAGTCTGCGACGTGATAAG
TTGTTCCGCCGTATAGGCGGCTTAGAAA	GCATCCCGTGGTTCGGTCGTCGCTTGGCATCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCCGTTCAGGGACAGAGTTGTTCAATGGGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGGATAAGCGAGTCCAAAATAAAGCGGGAATG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATGCAACGGCGGTGGAAATTCTGGTTGAGTA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ATTGTTTGCTCGACTTGATAAACAGGCATTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGTATGGCTGAAATCATGGGCTTCCAAAAAGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAGAGCAGATGGAGAGGGTTCGATCGGAACGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTCGGCTCCGGCCGTACCATTGACCTGCCTGCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TAATGTGCTTTTTTTGTCTGTCATTTTCCCCG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ACACATCAACTTGAGCACCACATTCGCACCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTACGCTTTGGGCTGTGTCAGAGTCCAACGA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATTGCCACCCGATAACGGGATACGTTTAACA


>NC_017068|4|2|1014916-1015844|PILER-CR
	TGTAGCTTATCAGCCACTTTCTGCTGGCCTTT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGAACAACGTTCGCTCGAACTCGAACAGCAAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TCTTGCCTTTACGCGGCTACTATCATTGACAC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AACAGCCCCCACCGTGCCTGTGACCTTGCCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATCCCTACTCCTGCCATAAATATGCCATACC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATAATCAAGCGGTAAAAAGTCAATCCTGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGTTGAACCATCACCCAACCACACACCGAGAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCGAATCTTCGTCCATGAATTGCAATTTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGCAGAAGAAAAAGCAAAGTTGGAGTTTGAGT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTCTCGCCTATCGCATGATAAGCCGCCTTAA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATCGCGATGATTGATGCGAGCGTCAATATTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CATCCAAAAGAAAATCGTCAGGACAACGTGGGG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	CACTATTAATCGCTTGTTGAATAGCCGCCGTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAAAACACTGACGGGCAGCTGAAAAGCAAAACTATGTGTTCCGCCGTATAGGCGGCTTAGAAATGTCCAACCATTAAACAGACATTTTTCGACCAGTGTTCCGCCGTATAGGCGGCTTAGAAAAAAGCCTGCAAAGCATTGCTCCACTCACCAAAGTGTTCCGCCGTATAGGCGGCTTAGAAACTTCAGCGCATTTTTGCTGACACCCGCGAGGGGTGTTCCGCCGTATAGGCGGCTTAGAAATGCAACTTTCGATGCAGCAGCATCAGCCCATCGTGTTCCGCCGTATAGGCGGCTTAGAAATGCTGCAACCATTTCTTATATCTTTTCCGACAGTGTTCCGCCGTATAGGCGGCTTAGAAA	GTAATCAGACGGCCTACAATGCGGATGATAAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAAATCGGAAAAGTTTGCATTAGGTGCAGATA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	GATTACCTCACGCCAGTCTGCGACGTGATAAG
TTGTTCCGCCGTATAGGCGGCTTAGAAA	GCATCCCGTGGTTCGGTCGTCGCTTGGCATCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTGCCGTTCAGGGACAGAGTTGTTCAATGGGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TGGATAAGCGAGTCCAAAATAAAGCGGGAATG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TATGCAACGGCGGTGGAAATTCTGGTTGAGTA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ATTGTTTGCTCGACTTGATAAACAGGCATTAT
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AGTATGGCTGAAATCATGGGCTTCCAAAAAGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AAGAGCAGATGGAGAGGGTTCGATCGGAACGC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTCGGCTCCGGCCGTACCATTGACCTGCCTGCC
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TAATGTGCTTTTTTTGTCTGTCATTTTCCCCG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	ACACATCAACTTGAGCACCACATTCGCACCTG
GTGTTCCGCCGTATAGGCGGCTTAGAAA	TTTACGCTTTGGGCTGTGTCAGAGTCCAACGA
GTGTTCCGCCGTATAGGCGGCTTAGAAA	AATTGCCACCCGATAACGGGATACGTTTAACA
GTGTTCCGCCGTATAGGCGGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017068.1\|WP_014424084.1\|1010276_1013555_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_017068.1\|WP_014424075.1\|1000700_1002554_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_017068.1\|WP_014424090.1\|1020650_1021169_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014424085.1\|1015937_1017092_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NC_017068.1\|WP_102013406.1\|1021256_1021631_-\|acetyltransferase	unknown	unknown	unknown
NC_017068.1\|WP_014424093.1\|1024023_1026243_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_017068.1\|WP_014424079.1\|1005031_1005445_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NC_017068.1\|WP_014424076.1\|1002553_1003381_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_017068.1\|WP_014424094.1\|1026343_1026796_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_017068.1\|WP_014424077.1\|1003377_1004397_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NC_017068.1\|WP_014424082.1\|1008406_1009126_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277367
NC_017068.1\|WP_014424089.1\|1019753_1020326_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380317
NC_017068.1\|WP_014424081.1\|1006289_1008263_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_017068.1\|WP_014424086.1\|1017105_1018038_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NC_017068.1\|WP_014424088.1\|1019056_1019635_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
NC_017068.1\|WP_014424087.1\|1018040_1019051_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_017068.1\|WP_014424092.1\|1022025_1023996_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NC_017068.1\|WP_014424083.1\|1009315_1010305_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_017068.1\|WP_014424078.1\|1004403_1005045_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NC_017068.1\|WP_014424080.1\|1005446_1006250_+\|TonB-family-protein	unknown	unknown	gnl\|CDD\|223880

Protein	Function_ID	Function_description	E-value
NC_017068.1\|WP_014424084.1\|1010276_1013555_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NC_017068.1\|WP_014424075.1\|1000700_1002554_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.81089e-71
NC_017068.1\|WP_014424085.1\|1015937_1017092_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.67865e-139
NC_017068.1\|WP_014424093.1\|1024023_1026243_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NC_017068.1\|WP_014424079.1\|1005031_1005445_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	6.42457e-30
NC_017068.1\|WP_014424076.1\|1002553_1003381_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.04999e-101
NC_017068.1\|WP_014424094.1\|1026343_1026796_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	9.65676e-48
NC_017068.1\|WP_014424077.1\|1003377_1004397_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.46531e-86
NC_017068.1\|WP_014424082.1\|1008406_1009126_+\|metallophosphoesterase	gnl\|CDD\|277367	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.57979e-21
NC_017068.1\|WP_014424089.1\|1019753_1020326_-\|nitroreductase-family-protein	gnl\|CDD\|380317	cd02140, Frm2-like, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	5.78087e-78
NC_017068.1\|WP_014424081.1\|1006289_1008263_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.67309e-48
NC_017068.1\|WP_014424086.1\|1017105_1018038_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.29326e-128
NC_017068.1\|WP_014424088.1\|1019056_1019635_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	6.37628e-75
NC_017068.1\|WP_014424087.1\|1018040_1019051_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_017068.1\|WP_014424092.1\|1022025_1023996_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017068.1\|WP_014424083.1\|1009315_1010305_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	9.9402e-167
NC_017068.1\|WP_014424078.1\|1004403_1005045_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	5.4779e-25
NC_017068.1\|WP_014424080.1\|1005446_1006250_+\|TonB-family-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	3.06235e-17

>NC_017068.1|WP_014424084.1|1010276_1013555_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVIFTSQSDKNALKTTRWILDAFANRIGTDTWQTVITEDGLQMVKRLLRRHATKSMSVSCRWIRSRTHSQLLWIVGDSSRFDENGYVPVNSTQKDIAHQAWENDWIYLPEIKSLAAMAGVLHDWGKSETAFQKMLKKASNGKRESDEVYRHEWLSCKLLEGLVWQTEKRTDEEWLNILQSGKIPEKKLEEWLAENASEKLKELPPVASMLCWLILSHHRLPVLDKEDAKAYANDEATAISKLLSGLDAGWGYQKQGKAEVKLSRGVLKSDKWQKQVKKWSGRLLSQISVLHKLWNQEDIRLLILYARVSLMLSDYTVSAAKADSSWPQDCTLFANTDKHGLKQRLDEHLVRVSMQAAQAAHCLPHFIRGMDRIEDVPNLRRKSPPAFVWQDKSVAKIGDWRKAEEKAGRSHEGWFVINMAGTGCGKTMGNAKIMQALSEDGKSLRYSLLLGLRSLTLQTGREYQERIGLDASEMAVLVGSAAARELYGDNAWEESADTDCMNGLLSGDVKADFAVEDKMLAVLFDSSAQLAQKHKELLYAPVLAATIDHLMPATETVRGGRHILPFLRMMSADVVIDEIDDFAGADLVAIARLVHMAGMLGRNVVLSSATIPPDLAEGMFSAYWSGRRLYTRFFGYPLRVNCVWCDEFQTKIQLADSSEMAVALSAYRQWHKHFALRHKEKLSLQPVKRRGWIVECADVLALPLAERQREYFKVMQHAMIKLHQQYALTDKRTGKKVSFGLVRLANIRPCVETAKFLLASEWPEGFAPRLLVYHSRQTAILRSQEEKYLDVVLKRKKQEAAEIDFQDIVLRRHLDCANEQNVVFILVSTPVEELGRDHDFDWAVVEPSSYRSIIQLAGRIRRHRPALENGAIGNIAIMQYNLLSITSINKVVFCRPGFESRKYALETHDMKALVDTEELAKGINAVPRTVRPEKLYPYKKLIHLEHQVLTDFRDLSCFGPSVLHGWQEESWWLTGLPQQFNKFREGAQDIELCLKKQENGTFCFCEQNEKTGEWIEREDWYHIQKQKDEESERFWLQRDYQQALADYQGDSVNSKVAIQAGILHLPANREKTVWVYSDQFGMYDEKKDFAT
>NC_017068.1|WP_014424083.1|1009315_1010305_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MQGLTPTELKAILFSKRANVYYLEKCRVMQKDGRVLYLIEGKKANQYWNIPIANTTVILLGTGTSITQAAMRMLASAGVLVGFCGGGGTPLLAGTEIEWLNPQSEYRPTQYVQGWMSFWFAEDKRLQAAKNFQHKRCAFLEKVWGKDRDLQGEGFFVDDREIEGALKGFRQRIDDAGNVTELLAAEANFAKQLYKYAVQRTDYGDFTRDTDATDIANIFLNHGNYLAYGMAASALWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPGAFVCTRNGMENQEFREYCLQKFTEHKVLDFMYDTIEKQSLQWYKGDGRNDGDIYQSE
>NC_017068.1|WP_014424082.1|1008406_1009126_+|metallophosphoesterase
MDKIERLLVFGDIHGKFDRFMEAYQKAGFNSDKDLLVFLGDYLDRGEQPVPVMEWVMENFGKRHMIFLRGNHEQMFYKAVKEKDESTNLLSFLFGSPKALWLNNGGRITYSEIEKTGRKDVLLDNWLKLIEQLPLYTEVEANGKSYWFMHADCNPEVPLAEQEEKTLLWGRSLAMHPELHQGEQVIALGHTPVQALGYEAKPQWLQDGKLVLMDTGSFMENGRVSCADLLSGEVYQSSI
>NC_017068.1|WP_014424081.1|1006289_1008263_+|TonB-dependent-receptor
MNKRNKHLSRQVAWGLAAMVLAGSYSYAEAADKQTVEENLGNVVVTATRSHKREVDTPAATEVITAKEIKETGAQNAAEALSKIDSIAYGAFGQNGAAMGTMSNEINIRGVDNGTLVLMNGNPISWRGKYDLSAIPADTIERIEVVKGSGSVLYGSEAMAGVVNIITKKKAANTVTAGIGNSGQHHYGANIGDDRLAINYDFSQWKHGVDVSKSETDFGQTRTNLNHVKKQSVDINYSLTKNLDFLYGYHETEAKYDRYVTEVTSAAAAAKVGDLFNSRKYETKRHITQLNYHDKNWKAGLYWNDGTVESNGPTNFSSAGKATKGKSAFYNTREKNMTYGLDVQRRWKVSSHSSWIGGLSLQRENYQKLYAHSTAEAADYARNNWAAFTQLEQKFDAKNTGIFGVRQTWTTGAWRDQNYHNFSASGQWLHKMDKANNLYVSVAQSFIMPTFSQMYGATGAGIPNPDLKPQKGVNYETGWKQNYHNHHWKAAVFHMDIKDNINASWDKDRSQYTYNNEDFRNTGVELACDIKSQRPLSYHWGATWQNPESKNAKKGYWDRKFGKVQLTGGITYKKSKLTSNLSGSYLCNRVQTPSAEHSFKAKPYFLTTWHTSYKPDAAQEITLTVHNVLNRHDVISHSSSTYYDAPASYMLNYTYKF
>NC_017068.1|WP_014424080.1|1005446_1006250_+|TonB-family-protein
MRQEQKAELKAWAVALGLHGVLFVLVALSGVFLLVKPTQNAEPVEVALWEDSGPAGGGEAGGGGPAPAPVPAAPPMEVAMSTQNLPQIQESYTKEPQKQQEYRQQHQPQAGKTTAAAAGETAGPKQAEANGSGSGTGTAMGSGSAVGQGTGTGSGTGSGAGSGSGNGNGGNNGHASTARVAARCTYRPSPAYPESLRQQGVEGSVRVLILVAEDDSIESVEIVKSSGYPAMDAAAANAARGCRFQMNGHRGRYTTTYSFQLADGDDW
>NC_017068.1|WP_014424079.1|1005031_1005445_+|biopolymer-transporter-ExbD
MRLRDRRHMEKPDIIIIPMIDIMFFLLVFFMLSTLYMVNLKTVDINMPQAAHAETQLKVTYVVTMKNDGSLWLEDKPIAEQELLKRVAQQQANNPQFTVVVRADQKLDYGMVIGLLDKIKGAGVTKVGLAADSAGGQ
>NC_017068.1|WP_014424078.1|1004403_1005045_+|MotA/TolQ/ExbB-proton-channel-family-protein
MENIVAGLELFQKGGLVMYVLLLCSLFVMAIGVERFQYFRRMDSGRGFAREFFALMGNEDYAGAMKLAQESSGNMAEIIIQAVERAADGQEVSSFMEIQSGVALSHFRRRLYYLNVIVTMAPLLGLLGTISGMISAFSVFNVQSAQATAITGGVGEALIATAFGLCVAIMALAIHAFFVQWLENIITDMEQAFSLVEAKQAELTKAGAAYAFA
>NC_017068.1|WP_014424077.1|1003377_1004397_+|iron-ABC-transporter-permease
MKNHFVSVLAVMFMLLLFMMLLSLSWGQMDIPFAHVLDALRKAAGLAPVNGLTPNEEAVIWHIRLPRTLVGLLTGAALAAAGAALQGLFANPLADPTIIGVSSGASVGAIVAIATGLSAATLFALPICALLGALLAVSLTIALAFRRGRIPVLTLLLAGVVVGMFLAAVSAMLLTAVSENKLQEYLFWTIGGLDYRRWEHVWLGLFPIAISVGIICLLARQLNILSLGETEAKAVGLPVIRFRLILLFLAALSTATGVCISGNIGFVGLVVPHMLRMLIGPDHRRLLPASVLAGGIFLLACDIVGRVLLAGTEIRVGIMTAFIGTPYFLYLLRRQQRME
>NC_017068.1|WP_014424076.1|1002553_1003381_+|ABC-transporter-ATP-binding-protein
MADLLLDVQGLQAGYGGRQVLRQVYFQAGGGELIGLIGPNGAGKSTLLKALRGLLPAEGRIGIKGKSLGDYTPQEMARVVAYLPQHSHVPFAFTVREVVLMGRAPHLRWWQREGAQDVRIAEACMEYMAVADLADTPVNTLSGGQRQRVLLAKVLAQQTPLLLLDEPASGLDLFYQEELFRFCRELCQAGRTILLVVHDLALAARFCSRLLLVGQGGLLADGEPRAVLQPELLSRAYGVSVYVDFHPQTGHADIYTRAMARRQQLLPLLMGGDAS
>NC_017068.1|WP_014424075.1|1000700_1002554_+|TonB-dependent-receptor
MQKDLTGRVLATLAIGTLCFGTAVCQAETVNEDLGDMVVTAERMPSQRMSTPADVTVITAKQIEDNHYQTVGEALANVNGVVVTNGNANGDSEVVINGDQRVVVLVDGQRLNNDQGSMTRASVSLGMLPSVKNIERIEVVKGAGSALYGSDAVGGVVNIITRKGTKSETSVDLNTGSFKTHNYELTNQGSEQGWSWFVAAGLQKRGYFNYKGDNDSRTRMANSDYSNKSVSLRLDKQLSDNDSLRLNFNHKLADMGILGKAAGRRQKHNYNYGALTWNFKEQQPVKGFLRYFANYKSTDYQGKYDTHVQGVDYQNGWKLGPNNKLVAGAEWHQSESTNKQSGYENKKITTKAVFVQDTMRLTDKWFFVPGVRMDHHDAFGTHWTPKAAINYRADKQTKIYGSWGRVFKAPTADDMFYTDEMYGMYGNPHLKPESGHVETIGFTHEFSRKATLDASYFWSNIHDAIKWVYDPATLLTNAENVSREKKQGVQLSFTGRPSAHWSYDIGYSYIDTKTDGAKVLFYQPNGYRLGLHYHYDRWTANLLGRMGSGLDDNTYGCRHYAIWDFNTTYAATKNVDVYFKINNLTNKMYYLVPKSAYTGWYYPLQGRSFQLGIKVSF
>NC_017068.1|WP_014424085.1|1015937_1017092_+|type-I-F-CRISPR-associated-protein-Csy1
MSVLTDYVQAESEKKGVPPGQWLADTAKNASKCQFATHIGRFINPDVTVNWQAKINGKLDDVYVSTGSVACSPDIFVAANYLATASLLQLRLEDGKTFYEHLQAADDCLREDFQIMQADYEQVREDLLTVKSDVLPDSTDKRLRQVFFPVGEDDYHLLTVLPPASLMQEVRARIRAMEDGARQACSKKSETYGSDHRRIYNLVQTKFGGTKPQNISYGNNRQGGRSYMLPAMPPVLEKRTIIYPRKDFFKETLRLRDFIGLFQRLHKRYVDKRNNMEIRQVVRSIERQIMEMVLLRVYVLREKCGWTDNRSLSRAQSIWLDDKYAEDRQIDEEWQKKLAGEFADWLMAAYEKVMKREKIEFGDGELTALRKEVAEFIRSDLQKQ
>NC_017068.1|WP_014424086.1|1017105_1018038_+|type-I-F-CRISPR-associated-protein-Csy2
MIKQYLMIPHLQIQNANAASSPYTVGFPAMTAWLGMTHALQRRIRQRDELQEVGLPRVAVICHAFDLQVFNEKGNFYGSLIGTANPLKKSRKTGEFERPPFVEEARCHLEISLLVELTGMKGSLKERFEETVRRELPRLKAAGGDIVLRHGEQQDWQVVSVDDDDERDVNRVKARLMPGYAIIERQDLLQHESGKDALDSLLNAMQVQYTANRDAEGAFLGWQRSKVAADGWLVPIAVGFHDLSGNLQVKEQRSYEYEHHFVEPLVTVGEFVMPYRCEAIQEMMWEYEYNEAEGLYLCRNMGKQDLRGEE
>NC_017068.1|WP_014424087.1|1018040_1019051_+|type-I-F-CRISPR-associated-protein-Csy3
MAKKAADIASVLAFEKKLVVSDGYMYGTCWDDEHKVKAEPLKLVEKSVRGTISNRLKPAVQNDPAKLNAEVEKPNLQQVDSCALGMEQDTLKLAFTIKVLSGVEKPSACNNAAFAQSYAAAAKGYIEKTGFKELSYRYAYNIASARFLWRNRLGAEKIDVCVKVGSWEQKFDAYTYSLRDFTEHEEIKALAGKIAAALSGEEPYQFIEVEAYTKLGVGQEVYPSEELVFDKGNSRKSKILYHVEGVAAMHSQKLGNALRTIDTWYPEFESPEGAGPIAVEPYGAVTNLGKAFRNPKEKVDFYTLFDKFALGEPLANAEEEHYVMAVLVRGGVFGKG
>NC_017068.1|WP_014424088.1|1019056_1019635_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MKFYQELTLLPDAEINENHIWSKLYQQLHLALATQMEDGSKGHIGVSFPQYEDGRKVQLGSKLRIFAETEAQLEALAIKKWLQRYEDYIHMTSIRPVPKRVHGYAIYRRYHQEASSMQKARRYAKRHDVSYDEALKLFPQECRDKKVPFVQMHSETNQQKYRLCIERIVQESYQDVGFGSYGLDNQSTVPEF
>NC_017068.1|WP_014424089.1|1019753_1020326_-|nitroreductase-family-protein
MSMLESIHQRRSYYQLVKELPVDAIKIKETVQQTTELVPDAFNMKSARVVLAMNSKHDELWDAIYTAFGGKVAREKIDSFKAGAGTVLYFYDEEVVKKLQEQYPAYAPNFPIWSQQANGMLQFTIWTALRDLNVGANIQHYNPVIDDAVKKLFNLPDSWKLVAQMPFGGIAAEPDAKEPEDITTRVKVFD
>NC_017068.1|WP_014424090.1|1020650_1021169_-|hypothetical-protein
MSSNNITTSSETQKVYDELNRLSPYCAPSGQFFERNDIEYLINNGYSLQDAKDALSRCPKYLSQYKAPNGQYFAVNDIEYLLDNGYSLQDALDELAECDRYSDGRTHQSNSSNRTIYNFNIFGAHAFCDDDDHFSHSHSSSYYDTGSSDDCDGSDFDNCGVNDNAEDKEPDA
>NC_017068.1|WP_102013406.1|1021256_1021631_-|acetyltransferase
MKPLCPWVKGGFNDAIVILPVGGVIVKVEGCHGELEILFVSPKAHSKGICYAAWCEVERMYPAVKVWETVTPYFEKHNIHFYVNRCGFHIVEFYNSHHPEPHHTDEPPDDQFPEGMFRFEKRLP
>NC_017068.1|WP_014424092.1|1022025_1023996_+|single-stranded-DNA-specific-exonuclease-RecJ
MLKEWKLSAAAPEAAAFAKELGVTKSLANILWNRGICTKEAAEVFLQPEKQPFYDPLLMKDMDRAVDRIIEAIDGEEKIVVYGDYDVDGMTATTLLVHNLKALGANVGFYIPHREKEGYGFNLPALQSIAEDGAKLLVSVDCGIASVDDVAAMAGRLDIIVTDHHLPGENLPPALAVVNPHREDCPYPDKDLAGVGVAFKLCQALWQEMHGQSYEQDLEIVALGTVADIVPLLGENRKIVAAGLKRMRKSSFAGMRALVDVSDIRDEELNTGHVGFRLAPRLNAAGRIGSARKGVELLLTKDEAEAESLAMELDMLNSQRQTIEQEILAKAEAELKGEDVNNLPAIVVAGENWNPGVIGIVASRLVDKYYKPTIVFSKQEDGICKGSCRSIDGLHMYEALKACKDHILQFGGHSQAAGLSVAESELQAFKEAFAATAEATLTADDYVPKVKVEMELAPEEITFELIDELAKLEPFGMKNPKPLFGVREIRGTAPQVIGKEGQHLRFQVGSTKAPVTALFWNRSDYAGIINSEAIDMVYSPAVNEWQGNRSLQCMVDSIAPADGERVFPEREQLVNIYKFLYQIQQQEDYIPYTAEELTVDFCKRGPHISLYTMSLGLRIFQELSLLRMDMDENCYYLPKASGRMDLESSPTYRRHR
>NC_017068.1|WP_014424093.1|1024023_1026243_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MNDKDKAPVTIDSILQAVQSYEPKADVALIRKAYDLAVEAHKGQVRVSGEEYIIHPLHVAEILTELHIDDVTISAALLHDVVEDTLYTKEQIEEMFGEEVAMIVDGVTKLGRIKYKSKEEVQLENYRKMFLAMAKDIRVIMVKLADRLHNMRTLKYMREDKQKRIAKETIEIYAPLANRLGISNIKWELEDLCLRYLEPEKYYDLVENVKQKRKERQAFIDTAIEQIETKIGEAGIKAEIKGRAKHFYSIYKKMLRDKKDISEIYDLSAIRVLVESVRDCYGVLGVIHAMWKPIPGRFKDYIAMPKSNGYQSLHTTVMTRGYPLEIQIRTFHMHEVSEFGVAAHWKYKENGKGSTAGGAMDQKMNWLRQMVSLQQELSDPKEYFEALKVDIFSDEVFVFTPKGDVVDLPKGSIPIDFAYRIHTEVGHHCVGAKVNGKLVPLEHKLKNGDIVSIITNKANNGPSRDWLNIVASSETRSKIRSWFKKERREENIERGMELIREEAKRLGYAPKELLKDGRLLEVAKKLNILSEDDLLAAVGYGGITVHGILTRLVEFHKEEIKEKTPLDVSQMLSALKRPANNRKSKSSHGVLVEGESGLMVRLARCCNPIPGDPITGYVTRGRGVSVHRTDCPNVLMDTDISRMIEVSWDVGLDKQYKVELEIVCNDRSGILASVLAVPTEMKINIHSINANPNRSTKTSTILLGLDVNSSTQVKQIITRLRRVKDVYSVVRKMGSNTNM
>NC_017068.1|WP_014424094.1|1026343_1026796_+|transcriptional-repressor
MAQTFTMDDLKQRLQARQHKMTPQRQTVLQVFLDHPGEHLSAEDVHGILRQDKSEIGLATVYRSLELLSELEILQKMEFGDGCSRYEVNTTDPSEHHHHHLICTTCGKVTEFEDDLLDDLEGDIQKKMGFHVLNHQVKFFGTCKECQKEN

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Crispr_ID: NC_017068_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017068_5

1860917-1861020

TypeV

Consensus_repeat	Method
ATAACGCAGTTGTTCAAATTTTGCCATAGGCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017068_5

>merge|NC_017068|5|1860917-1861020|CRISPRCasFinder
ATAACGCAGTTGTTCAAATTTTGCCATAGGCAAAATACACAAATCAGCGTTTCGACGGACTTGTTCCGTCATAACGCAGTTGTTCAAATTTTGCCATAGGCAAA

>NC_017068|5|5|1860917-1861020|CRISPRCasFinder
ATAACGCAGTTGTTCAAATTTTGCCATAGGCAAA	ATACACAAATCAGCGTTTCGACGGACTTGTTCCGTC
ATAACGCAGTTGTTCAAATTTTGCCATAGGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017068.1\|WP_014424925.1\|1859792_1860746_-\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NC_017068.1\|WP_014424924.1\|1858539_1859796_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277318
NC_017068.1\|WP_014424928.1\|1863982_1864618_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NC_017068.1\|WP_014424930.1\|1865331_1865739_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014424916.1\|1849388_1850615_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NC_017068.1\|WP_014424920.1\|1855285_1855594_-\|metal-sensing-transcriptional-repressor	unknown	unknown	gnl\|CDD\|197391
NC_017068.1\|WP_014424918.1\|1851770_1852640_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_017068.1\|WP_014424929.1\|1864619_1865315_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_041914351.1\|1867210_1867603_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014424931.1\|1865741_1865948_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014424921.1\|1855674_1856868_-\|type-II/IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|225363
NC_017068.1\|WP_014424917.1\|1850598_1851660_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|225364
NC_017068.1\|WP_158645795.1\|1866037_1866199_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014424922.1\|1856959_1857808_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_017068.1\|WP_014424927.1\|1863672_1863909_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_014424926.1\|1861068_1863054_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_017068.1\|WP_014424919.1\|1852707_1855272_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_017068.1\|WP_050992763.1\|1857804_1858533_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_017068.1\|WP_014424932.1\|1866218_1866551_-\|hypothetical-protein	unknown	unknown	unknown
NC_017068.1\|WP_041914350.1\|1866926_1867208_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017068.1\|WP_014424925.1\|1859792_1860746_-\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	7.20582e-125
NC_017068.1\|WP_014424924.1\|1858539_1859796_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.16815e-22
NC_017068.1\|WP_014424916.1\|1849388_1850615_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	1.13087e-91
NC_017068.1\|WP_014424920.1\|1855285_1855594_-\|metal-sensing-transcriptional-repressor	gnl\|CDD\|197391	cd10156, FpFrmR-Cterm-like_DUF156, C-terminal domain of Faecalibacterium prausnitzii A2-165 FrmR , and related domains; this domain family was previously known as part of DUF156. This domain family contains the C-terminal domain of the functionally uncharacterized protein Faecalibacterium prausnitzii A2-165 FrmR, and related domains. This family is part of a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family, and a conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are also conserved.	4.04196e-39
NC_017068.1\|WP_014424918.1\|1851770_1852640_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.17524e-63
NC_017068.1\|WP_014424921.1\|1855674_1856868_-\|type-II/IV-secretion-system-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	9.93041e-135
NC_017068.1\|WP_014424917.1\|1850598_1851660_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	1.04984e-126
NC_017068.1\|WP_014424922.1\|1856959_1857808_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.44062e-30
NC_017068.1\|WP_014424928.1\|1863982_1864618_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	6.12909e-69
NC_017068.1\|WP_014424926.1\|1861068_1863054_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.32293e-66
NC_017068.1\|WP_014424919.1\|1852707_1855272_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_017068.1\|WP_050992763.1\|1857804_1858533_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.98574e-24

>NC_017068.1|WP_014424925.1|1859792_1860746_-|magnesium-transporter-CorA-family-protein
MLKIYKSLESGPLQELTLKTLEKGAWINIVDPTPYELKVVSNLTEVDPDFLRSALDDEERSHTDIEDDSVMVLTNVAVNRGNDSYDALPLAIIISEDYIITVCLEETPVMAEFNERTAKLFRTYKKTRFLFQILYKSATFYLRYLRQISKLSDDIENQLRHDMKNSEILRLLELQKGLTYFNAAIRSNGAVLDKLLRMRNNPALTPILKAYEEDEDLLEDVIIENKQAKEMVEMYSKILARMADTFTSIIANNQNLVMKFLAAMTIIIAIPTVVSSFFGMNVPVPFAESNNGFLYVMIIAFGISITGAYALWKKDMF
>NC_017068.1|WP_014424924.1|1858539_1859796_+|metallophosphoesterase-family-protein
MTLSRRKFLTLAGKVILFLGLSSAFPRLAAAAYDTLPIEALRQLITADPRNSRTIMWQSKTPLEGCRLQYQGPDGTMKNLPVNMESLEEDRVFNYYYTCCLKDLTPDSTYHYRIWQGNIATSWQTFSTAPAKIENFSAIIFCDSQCGQTYAGWGQAFRTIWQRHADAHFFAIVGDIVDNGQQEWQWQNFFANIEGVLPQHLYVPVMGNHECYSLIWKFCRPHRYELSYNLPANGTPELQNYYYSYDYGPVHFIVLNTQMLELKDIHPDLLEKQKIWLRQDVKNHRAKWQVVLMHKDILAYDEYQEGSKTMMSISDVGHAFMPIFDELGINLVLTGHMHTYRNRGHIYHLQPAEKGPVYIMSGPIGNQQYTVPADKTFDRSAIYQPTPENYLLLNASNEKLSVTCYTVSGELIETYEIA
>NC_017068.1|WP_050992763.1|1857804_1858533_+|TVP38/TMEM64-family-protein
MIANSHREEILLQFTKSLKVVKLGALAAIVLLFVVIHLLNPAFLPHMCGLLARGDIQETADYIASFGSGAVIFSFLLTLFVNALGFPPAIIFSTANTLIFGIGWGIFLSVVAETVGVAISFILLRFFFRDAAEKIISKNKTLSNLDKYSGKQGFVVMLIARMVPYLPSVMLNAIGALSAMRFRDYVVASFVGKFPSTGIEAIIGHDAITHQEDPTRMIVVIILAILLIVGAWLYERHEQRKK
>NC_017068.1|WP_014424922.1|1856959_1857808_+|AraC-family-transcriptional-regulator
MSDYEKKGYLVSDFRVFRLKDAALKPIPFHYHDFHKIIMFLDGAVDYVIEGKTYHLAPRDIVFVTAGEIHRPVFTDEKKDYERIVIYVAPDFLARWQEQDAEHTDLAQCFAYARENSSVMHQPPGTSHDLLFHMDKLEKTAHGQGFANGLFTEIMFIEFMILLNRSLHEHELAGLNNAVYDPKIQSIITYINAHLAEELSIDDLAARAYISKFYLMRKFKADTGYGVHQYIRSKRLLLARDLLKTDLPITAICEEVGFADYSTFSRAFKEMFKCAPRDYRKQ
>NC_017068.1|WP_014424921.1|1855674_1856868_-|type-II/IV-secretion-system-protein
MHNEQIFDLIIFEEKGRDAMQNEDTFWRILLNQCRQEQIPGAEGTTGSSAAMVRLVDFLILQALEAGASDLHIEPWERSLRFRLRVDGLLQVMPWQLPGDLAPMLVSRIKVLAGMDIAKHQQPQDGAFIFQEQGKKVDIRAASMPVAGGEMLVLRLLNMQDEMLTLSELGFTAENEAKFRELIHRPSGLLIVCGPMGSGKTTTLYAALREVNRVEKNWLTLEDPIERHIQGINQIQVNPQAGLSYANGLRAILRMDAQGILLGEIRDEETAMLAVRMALTGHLILTTLHTESAVAAVLRLLEMKVPPYLLAATLSGVLAQRLVRRCVDKEQELYRGRLALHELMVVDKSIREAILIGQSQEQLEALAWQGGMRTLWSDGEAKAAAGLTTREELTRVL
>NC_017068.1|WP_014424920.1|1855285_1855594_-|metal-sensing-transcriptional-repressor
MEKCHCKDVKHKHRDKDGKEYKGLISRLNRIEGQVRGIRRMVEEDRYCVDIMVQVSAIQAALGAFNKELLAQHINSCVVHDIREGDDQVVDELITLLGKMVR
>NC_017068.1|WP_014424919.1|1852707_1855272_-|heavy-metal-translocating-P-type-ATPase
MKKERFDITGMTCSACSARVEKAVTKLAGTAEVSVNLLTNSMQLTYDEGKINTSQIIAAVEQAGYGASVKGKKAVDAIKKEDDPLAREAAAMRQRLLWSVIFLLPVMFIAMHRMFFGWLGLPVPELLQALFAGPENAITFSFAQFLLILPIMYLNRKYYLNGFRNLWQGAPNMDSLVGMGSMAAALFGAFAVFRMGWGLGHGNLALVEEYSRNLYFESAGMIVTLITVGKFLEAKAKGRTGEALAKLMELAPQKATVLRDGQELSLPTEELVAGDEIIVRPGERLPADGTVISGQTSIDESAITGESLPVFKQAGDKVTSATLNKTGAIHFRAEKVGGDTAISQIIRLVDEASASKAPMARLADRIAGIFVPVVILIALAAGGIWLALGASVEFAFSIAISILVISCPCALGLATPVAIMVGTGKGAENGILIKSGEALETAQAVDTVVLDKTGTITEGKPKVTDLQALSIPEAEFLSLAAGLEQNSEHPLAEAVLAYAAEKGVTPAGISDFQAVPGRGLQGKVRGELYMAGNEAFMAEQGVDISDCQQELERLAAEGKTPLLFAKEKKLLGVIAVADKEKESSRQAISQLTAMGLEVIMLTGDNERTAEAVRRRLGITRAIAGVLPAAKEQHIAALQAQGHKVAMVGDGINDAPALARADIGMAIGAGTDVAMESADAVLIRSNLLDVVSAIRLSKAVIRNIKENLFWAFIYNIIGIPLAAGLLYPAFGIKLSPMIGAAAMSMSSVCVVLNALRLRSFKTAGNVAGMAAEIDNQVGQATVRKEDKTMQKELKIEGMMCAHCQKHVNDALSKMAGVTAVEVNLEAGTATVTAEREIPQAEFAQVITEAGYELVG
>NC_017068.1|WP_014424918.1|1851770_1852640_-|ROK-family-protein
MQYACIDIGGTAIKYAMMTEDGQILAKGQVLTKVETDGSRAIPGKIAAIVCDLQKEYGQAAGVAVCSPGLIDAEKGEVIFAGPNFPGYSGMKLREEIEKLTQLPCTVENDVNAAGLGESWLGAGKGAKSAFCMFVGTGVGGALVLDGHLVHGAAAAAGEIGFLPLAGGSLEQLASMTALLQNTGAATGEEVFARAAAGEEKALTALEDMTRKLACGLAQICCVVNPEVLIMGGAVMAQREFFEPRLHQYLAELLPPALLKHTRIAFAQLGTAAGFTGALRHFLQKAGQR
>NC_017068.1|WP_014424917.1|1850598_1851660_-|PilT/PilU-family-type-4a-pilus-ATPase
MGDDVDWQGIISRAIEKEASDIHLTVGQRPHMRCDGVLVSMDGRPLTEQFMAAFDAVIMDEGQRKRLARECDIDLSWTFAGRRFRVNAYRQQGYPALAIRLLPERIPTLAEINAPQAWQKIKELDQGLVLVCGRTGSGKSTTLAAFIETLNRERAYHIVTLEDPIEYVFQPDKCFISQRELGRDFYDFAEALRGGLREMPDVVLVGEIRDKETMLTALAAASAGMLVLGTLHSGSAAAAVLRVEGMFPLEERASVRSLLAEVLQGIFAQQLLPAARGGRTALVEVLLANATVRSLIRQAKYNQLSSVMLSQQELGMQTFAVAVQKMQQAGLLERSMGEQVMAQARGTQYELSL
>NC_017068.1|WP_014424916.1|1849388_1850615_-|type-II-secretion-system-F-family-protein
MNYRYEASNRQGRIFKGTIAAANRQEAARKIKRQGLWITALLQEEGQKESGAGRWHPGQLFAGRKVDDTQIALFCRQLAVLLSAGIPVHEGLKALLAGGRKDAYAHLINGLYQQVLQGKSLAAAMEASHNFSPRIVRLVAAGEQAGTLEAVFSRLADFLAQTVKAREQLKSVLLYPAILGLTALGMLIFMALFILPAFASMLQNLQVELPWPTRVLLSLTDFLQIYGMETLAVGSVLALGILLLARQPLVVYRYHQFVLQLPLAGSLARHSGWALILGTMAMILEQGLPLHEAIRMAAPVAGNRYLERELLQVQAKVEQGSGLMTAMIRCPVFPVILAEMLEAGEEAGRLEEMLAKAAAFCQVQAENESARLQALAEPAAIFIVGGLVFFLVLAVIMPLLNTMDAITL
>NC_017068.1|WP_014424926.1|1861068_1863054_-|methyl-accepting-chemotaxis-protein
MGIRQKFILLAGIVGIILIVVSATGYYTAYDNLSESVNGEIVANVSTEREHVDGWLKEKANAVTAQANLMTDYEKSGLEMDNEEMKYLLGTASSDKDYQEMTRGDEEGMFLPYNSPDETGKTDPRKRPWYAQARDAGKTVYTEVYTSKSTGDLVVSAVAPFYGENKQFRGAICGDITLTVLKEQVQKVKYRDQGIGYIIEKTGKLLATSGKEEPMSEAKNIKGVGEKLDAMFQKGNGYFTYEDADGVEQLCAYTTVPTTGWLIAMAVPTEYVFAPIHRLKVIYGVLIVIGFLLVVGMCLTFAARITKPIVALEGQAAQLADGNLRVPQLPVTTSDEIGSMTNAFNKMQQNLHDLIGKMAATSEQVAAASEELTANAQQSAEAAVHVAETIGEVSAGMDKQLVDIDGAKKNVDSVFVDITAMTEKTRKVSEASVNTSDAAKQGELLMKDATTKMEHIETSVMNSADVVRTLGESSQQIGQIVEAISSIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAAESQESAEQIKARILTIQNDTAQAVKAMEEGKTEVQLGAKAIRDVGVQFQDIMGQVNGIKTQIDEISTSVNSVSSGAGNIVEAVDSIDSVSRKTADHTSSISAATEEQSASNEEIAAASQALANLASDMQVAINKFKL
>NC_017068.1|WP_014424927.1|1863672_1863909_-|hypothetical-protein
MPGKATRPDDKRHFNKGGGSGKGGRPVGSVSARGQRGIHQIRAYDDEWELIKRFMQLTRKDIDKCRFAVNMLSAELDK
>NC_017068.1|WP_014424928.1|1863982_1864618_-|DNA-repair-protein-RadC
MCDMKLREKISEYGDRLGMEIYTTQELFSILTGVDADNFGKNDEMQVSNIMLNPEVISGIGKKKAMQIKAVYELSVRMAEHDKRNFGIHGPKDVEIFASPRMKYLQVEHFAVMHLNTKNQVIGFETISEGGLSSTVVHPREVFLSAIKHHSASIILVHNHPSGGLLPSKEDIAITGRLVKSGGILDIPVLDHVIIGNGYCSMKEKGYIPHR
>NC_017068.1|WP_014424929.1|1864619_1865315_-|hypothetical-protein
MGDYAYRKSDNERIKIGTCGAMYYLTFDQWANGEVYGEDANGIAEYLEHMTFRLPLASEKDVKAGDFEFYGYSGAKPLRVYCKKYKDKEEKEVTDFYKELRKFCLDNPYNIKMTKTLGKRQGYSWDERTGIYVNAPCYHGFIPDEPPKGVGYNGFNPHVLAIEGVGIRHGEARVIMCCVACEHTVCSLNLKDLVQNFGCFYESTEDWEYLIDRLMFMDKWAKEHCAEKEVG
>NC_017068.1|WP_014424930.1|1865331_1865739_-|hypothetical-protein
MNVLVQDVSVLNDGKYFAVTKVCEIDAGNTLQAMYDLIGCDTVDYRSFTIEGHEYDAWFDDEFLFADKQIPSALLTEDEGWGSNVLICNNVFYARSDMEGGMVGLTDEDVERLKRWQSKSMSKAIKYARVVGMIG
>NC_017068.1|WP_014424931.1|1865741_1865948_-|hypothetical-protein
MGEEKKIWYGVTSSYDDKGHVAASITMAVESKEAPKPSFTETQRRDIYTDWFESEAEAKAFVEKSRRA
>NC_017068.1|WP_158645795.1|1866037_1866199_-|hypothetical-protein
MERIRGYWGRSSDNLPSNYWEPQPDEEDLERIKREYDEGERECWLPDEPIPFE
>NC_017068.1|WP_014424932.1|1866218_1866551_-|hypothetical-protein
MTKAMERKFEELVAVRTETGNKYLDLHDVIWDNEIEEYIEGFKKMGEEKFTISVGQGSLIEVLARFQELGCKIEGVVDYRDKYRMFDVECVGNGIKQVPHYEKALLVSIA
>NC_017068.1|WP_041914350.1|1866926_1867208_-|hypothetical-protein
MLIKRYLDALEEACGNMSGCWFFGVVTPETVRTERRIDRLTKRLVDAGASLYAITKFKECASYFGAEDGNVSYEWNESGMAMFREMILEETQV
>NC_017068.1|WP_041914351.1|1867210_1867603_-|hypothetical-protein
MGFFSWTTSDTERSISNMYSTKGALPVYLLCPDGTKIHEQCYEGYGVFGGSDAYALLARWNAPNECNGDDDHDRLVGINLQCHRKSEVKFPLKFVEDGSLNYDEVDESEDCPMQGFFYEDEDEGEDEWEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017068_1	1.1\|148126\|28\|NC_017068\|CRISPRCasFinder	148126-148153	28	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1152861-1152888	6	0.786
NC_017068_1	1.1\|148126\|28\|NC_017068\|CRISPRCasFinder	148126-148153	28	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1153860-1153887	6	0.786
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MK608336	Serratia phage Serbin, complete genome	13159-13190	6	0.812
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	NZ_CP049909	Hymenobacter sp. HDW8 plasmid p_unnamed2, complete sequence	83018-83049	6	0.812
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	KY290953	Aeromonas phage 51, complete genome	21307-21338	6	0.812
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	NC_019527	Aeromonas phage vB_AsaM-56, complete genome	21307-21338	6	0.812
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	KY290954	Aeromonas phage 56, complete genome	21307-21338	6	0.812
NC_017068_4	4.22\|1015004\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015004-1015035	32	KX961629	Bacillus phage BJ4, complete genome	24429-24460	6	0.812
NC_017068_4	4.22\|1015004\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015004-1015035	32	KJ489399	Bacillus phage Hakuna, complete genome	24221-24252	6	0.812
NC_017068_4	4.22\|1015004\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015004-1015035	32	KX349902	Bacillus phage Kida, complete genome	25048-25079	6	0.812
NC_017068_3	3.1\|687076\|38\|NC_017068\|CRISPRCasFinder	687076-687113	38	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	484464-484501	7	0.816
NC_017068_3	3.1\|687076\|38\|NC_017068\|CRISPRCasFinder	687076-687113	38	MK075001	Staphylococcus phage phiSP15-1, complete genome	949-986	7	0.816
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_AP018442	Undibacterium sp. YM2 plasmid pUYM01, complete sequence	11228-11259	7	0.781
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MG873442	Salmonella phage SE131, complete genome	21419-21450	7	0.781
NC_017068_4	4.3\|1013862\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013862-1013893	32	KP063903	Bacillus phage BalMu-1 copy 2, complete genome	37083-37114	7	0.781
NC_017068_4	4.3\|1013862\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013862-1013893	32	KP063902	Bacillus phage BalMu-1 copy 1, complete genome	37095-37126	7	0.781
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	12366-12397	7	0.781
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	430011-430042	7	0.781
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	NZ_CP047220	Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence	579-610	7	0.781
NC_017068_4	4.1\|1013742\|32\|NC_017068\|CRISPRCasFinder,CRT	1013742-1013773	32	NZ_CP030854	Runella sp. HYN0085 plasmid unnamed4, complete sequence	48631-48662	8	0.75
NC_017068_4	4.3\|1013862\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013862-1013893	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	245810-245841	8	0.75
NC_017068_4	4.5\|1013982\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013982-1014013	32	NC_017078	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence	226864-226895	8	0.75
NC_017068_4	4.5\|1013982\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013982-1014013	32	NC_015162	Deinococcus proteolyticus MRP plasmid pDEIPR02, complete sequence	113628-113659	8	0.75
NC_017068_4	4.7\|1014102\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014102-1014133	32	MK448721	Streptococcus phage Javan263, complete genome	13729-13760	8	0.75
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	NZ_LR134422	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 13	75282-75313	8	0.75
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	KT160311	Vibrio phage H188, complete genome	31583-31614	8	0.75
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	MG592392	Vibrio phage 1.005.O._10N.286.48.F2, partial genome	44022-44053	8	0.75
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	KF302033	UNVERIFIED: Pseudoalteromonas phage HS1, complete genome	21571-21602	8	0.75
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	MN101219	Klebsiella phage KOX6, complete genome	29339-29370	8	0.75
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	KF302032	UNVERIFIED: Pseudoalteromonas phage HS5, complete genome	7487-7518	8	0.75
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	MN101220	Klebsiella phage KOX7, complete genome	29764-29795	8	0.75
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	HM588722	Pseudoalteromonas phage H105/1, complete genome	3874-3905	8	0.75
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	MN101217	Klebsiella phage KOX4, complete genome	30155-30186	8	0.75
NC_017068_4	4.24\|1015124\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015124-1015155	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	1779-1810	8	0.75
NC_017068_4	4.24\|1015124\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015124-1015155	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3110128-3110159	8	0.75
NC_017068_4	4.24\|1015124\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015124-1015155	32	NC_019555	Agrobacterium tumefaciens strain F64/95 plasmid pAoF64/95, complete sequence	1779-1810	8	0.75
NC_017068_4	4.27\|1015304\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015304-1015335	32	NC_009926	Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence	284564-284595	8	0.75
NC_017068_4	4.32\|1015605\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015605-1015636	32	AP014236	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S25-C36, * SEQUENCING IN PROGRESS *	11296-11327	8	0.75
NC_017068_4	4.32\|1015605\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015605-1015636	32	AP014237	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S45-C87, * SEQUENCING IN PROGRESS *	6314-6345	8	0.75
NC_017068_3	3.1\|687076\|38\|NC_017068\|CRISPRCasFinder	687076-687113	38	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	485475-485512	9	0.763
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MF417942	Uncultured Caudovirales phage clone 7F_6, partial genome	11034-11065	9	0.719
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MF417876	Uncultured Caudovirales phage clone 3F_6, partial genome	1101-1132	9	0.719
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MF417869	Uncultured Caudovirales phage clone 3S_4, partial genome	43398-43429	9	0.719
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MF417877	Uncultured Caudovirales phage clone 9F_7, partial genome	35479-35510	9	0.719
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	MF417878	Uncultured Caudovirales phage clone 8S_7, partial genome	40760-40791	9	0.719
NC_017068_4	4.5\|1013982\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013982-1014013	32	NZ_CP045352	Vibrio sp. THAF100 plasmid pTHAF100_b, complete sequence	32982-33013	9	0.719
NC_017068_4	4.7\|1014102\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014102-1014133	32	NZ_CP007001	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence	25445-25476	9	0.719
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	KR093640	Moraxella phage Mcat16, complete genome	27839-27870	9	0.719
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	KR093641	Moraxella phage Mcat17, complete genome	20698-20729	9	0.719
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	MK473373	Pseudomonas phage Lana, complete genome	4514-4545	9	0.719
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	MG592441	Vibrio phage 1.063.O._10N.261.45.C7, partial genome	34165-34196	9	0.719
NC_017068_4	4.10\|1014282\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014282-1014313	32	KR093639	Moraxella phage Mcat15, complete genome	27305-27336	9	0.719
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	282320-282351	9	0.719
NC_017068_4	4.12\|1014402\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014402-1014433	32	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	98129-98160	9	0.719
NC_017068_4	4.22\|1015004\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015004-1015035	32	NC_031116	Bacillus phage Zuko, complete genome	25966-25997	9	0.719
NC_017068_4	4.23\|1015064\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015064-1015095	32	KT221034	Streptomyces phage SF3, complete genome	25887-25918	9	0.719
NC_017068_4	4.27\|1015304\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015304-1015335	32	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	897367-897398	9	0.719
NC_017068_4	4.29\|1015424\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015424-1015455	32	MT708546	Rhizobium phage Paso, complete genome	13550-13581	9	0.719
NC_017068_4	4.33\|1015665\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015665-1015696	32	KY821088	Bacillus phage Harambe, complete genome	6073-6104	9	0.719
NC_017068_4	4.34\|1015725\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015725-1015756	32	MG655267	Erwinia phage vB_EamM_Bosolaphorus, complete genome	67381-67412	9	0.719
NC_017068_4	4.34\|1015725\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015725-1015756	32	MG655269	Erwinia phage vB_EamM_MadMel, complete genome	67968-67999	9	0.719
NC_017068_3	3.1\|687076\|38\|NC_017068\|CRISPRCasFinder	687076-687113	38	NZ_CP016544	Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence	7475-7512	10	0.737
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010589	Phaeobacter gallaeciensis strain P11 plasmid pP11_a, complete sequence	230451-230482	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010612	Phaeobacter inhibens strain P92 plasmid pP92_b, complete sequence	200788-200819	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010624	Phaeobacter inhibens strain P51 plasmid pP51_a, complete sequence	193556-193587	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010669	Phaeobacter inhibens strain P57 plasmid pP57_a, complete sequence	193556-193587	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP021041	Phaeobacter gallaeciensis strain P129 plasmid pP129_a, complete sequence	230955-230986	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010674	Phaeobacter gallaeciensis strain P75 plasmid pP75_a, complete sequence	230451-230482	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NC_023138	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_A255, complete sequence	229959-229990	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010630	Phaeobacter inhibens strain P78 plasmid pP78_a, complete sequence	230230-230261	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP031953	Phaeobacter inhibens strain 2.10 plasmid unnamed1, complete sequence	211091-211122	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NC_018421	Phaeobacter inhibens 2.10 plasmid pPGA2_239, complete sequence	210998-211029	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010600	Phaeobacter inhibens strain P83 plasmid pP83_a, complete sequence	201334-201365	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010618	Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_a, complete sequence	215042-215073	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010726	Phaeobacter inhibens strain P88 plasmid pP88_a, complete sequence	201329-201360	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010637	Phaeobacter gallaeciensis strain P73 plasmid pP73_a, complete sequence	230451-230482	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010651	Phaeobacter inhibens strain P54 plasmid pP54_a, complete sequence	216390-216421	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010706	Phaeobacter inhibens strain P66 plasmid pP66_a, complete sequence	201334-201365	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010697	Phaeobacter inhibens strain P24 plasmid pP24_a, complete sequence	193556-193587	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010746	Phaeobacter inhibens strain P48 isolate M21-2.3 plasmid pP48_a, complete sequence	208446-208477	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP019308	Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-1, complete sequence	44471-44502	10	0.688
NC_017068_4	4.2\|1013802\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1013802-1013833	32	NZ_CP010736	Phaeobacter inhibens strain P72 plasmid pP72_a, complete sequence	201359-201390	10	0.688
NC_017068_4	4.7\|1014102\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014102-1014133	32	MK448890	Streptococcus phage Javan264, complete genome	11780-11811	10	0.688
NC_017068_4	4.8\|1014162\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014162-1014193	32	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	65455-65486	10	0.688
NC_017068_4	4.8\|1014162\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014162-1014193	32	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	28934-28965	10	0.688
NC_017068_4	4.8\|1014162\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014162-1014193	32	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	23379-23410	10	0.688
NC_017068_4	4.9\|1014222\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1014222-1014253	32	NC_015855	Pseudomonas putida plasmid pGRT1, complete sequence	39274-39305	10	0.688
NC_017068_4	4.19\|1014824\|32\|NC_017068\|CRISPRCasFinder,CRT	1014824-1014855	32	NC_042040	Rhodococcus phage Trina, complete genome	33560-33591	10	0.688
NC_017068_4	4.27\|1015304\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015304-1015335	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1727777-1727808	10	0.688
NC_017068_4	4.27\|1015304\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015304-1015335	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	437748-437779	10	0.688
NC_017068_4	4.28\|1015364\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015364-1015395	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	615892-615923	10	0.688
NC_017068_4	4.28\|1015364\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015364-1015395	32	MK962753	Shigella phage JK32, complete genome	60608-60639	10	0.688
NC_017068_4	4.28\|1015364\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015364-1015395	32	MK962753	Shigella phage JK32, complete genome	60874-60905	10	0.688
NC_017068_4	4.28\|1015364\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015364-1015395	32	NC_024792	Bacillus phage Bobb, complete genome	8552-8583	10	0.688
NC_017068_4	4.29\|1015424\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015424-1015455	32	MN310372	Pseudomonas putida strain 150716811 plasmid p716811-VIM, complete sequence	147578-147609	10	0.688
NC_017068_4	4.20\|1014884\|32\|NC_017068\|CRISPRCasFinder,CRT	1014884-1014915	32	NC_013783	Lactococcus lactis subsp. lactis plasmid pAR141, complete sequence	656-687	11	0.656
NC_017068_4	4.32\|1015605\|32\|NC_017068\|CRISPRCasFinder,CRT,PILER-CR	1015605-1015636	32	NZ_CP029457	Bacillus cereus strain FORC087 plasmid pFORC087.3, complete sequence	6191-6222	11	0.656

1. spacer 1.1|148126|28|NC_017068|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 6, identity: 0.786

ctgaacaagggcgttatgtcgcgacaga	CRISPR spacer
ttcgacaagggcgctatgtcgcgccagc	Protospacer
.* .*********.********* ***

2. spacer 1.1|148126|28|NC_017068|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 6, identity: 0.786

ctgaacaagggcgttatgtcgcgacaga	CRISPR spacer
ttcgacaagggcgctatgtcgcgccagc	Protospacer
.* .*********.********* ***

3. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MK608336 (Serratia phage Serbin, complete genome) position: , mismatch: 6, identity: 0.812

-tgtagcttatcagccactttctgctggccttt	CRISPR spacer
atgt-ccatgtcagccagtttctgctggcgttt	Protospacer
 ***  * *.******* *********** ***

4. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049909 (Hymenobacter sp. HDW8 plasmid p_unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
aacagaagaaaaagcaaagttgaagtcataga	Protospacer
*.********************.***.  **

5. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KY290953 (Aeromonas phage 51, complete genome) position: , mismatch: 6, identity: 0.812

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
tgacccgatgatagatgcgtgcgtcaatatcg	Protospacer
*. * ******* ****** **********.*

6. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_019527 (Aeromonas phage vB_AsaM-56, complete genome) position: , mismatch: 6, identity: 0.812

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
tgacccgatgatagatgcgtgcgtcaatatcg	Protospacer
*. * ******* ****** **********.*

7. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KY290954 (Aeromonas phage 56, complete genome) position: , mismatch: 6, identity: 0.812

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
tgacccgatgatagatgcgtgcgtcaatatcg	Protospacer
*. * ******* ****** **********.*

8. spacer 4.22|1015004|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KX961629 (Bacillus phage BJ4, complete genome) position: , mismatch: 6, identity: 0.812

-aaaatcggaaaagtttgcattaggtgcagata	CRISPR spacer
tagaatc-ctaaagtattcattaggtgcagata	Protospacer
 *.****   ***** * ***************

9. spacer 4.22|1015004|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 6, identity: 0.812

-aaaatcggaaaagtttgcattaggtgcagata	CRISPR spacer
tagaatc-ctaaagtattcattaggtgcagata	Protospacer
 *.****   ***** * ***************

10. spacer 4.22|1015004|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 6, identity: 0.812

-aaaatcggaaaagtttgcattaggtgcagata	CRISPR spacer
tagaatc-ctaaagtattcattaggtgcagata	Protospacer
 *.****   ***** * ***************

11. spacer 3.1|687076|38|NC_017068|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.816

cgtcacca-tcggcaccttcgtcaagcggttaagacacc	CRISPR spacer
-attactatttggccccttggtcaagcggttaagacacc	Protospacer
 .*.**.* *.*** **** *******************

12. spacer 3.1|687076|38|NC_017068|CRISPRCasFinder matches to MK075001 (Staphylococcus phage phiSP15-1, complete genome) position: , mismatch: 7, identity: 0.816

-cgtcaccatcggcaccttcgtcaagcggttaagacacc	CRISPR spacer
gtggagccat-ggccccttggtcaagcggttaagacacc	Protospacer
 .*  .**** *** **** *******************

13. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018442 (Undibacterium sp. YM2 plasmid pUYM01, complete sequence) position: , mismatch: 7, identity: 0.781

tgtagcttatcagccactttctgctggccttt---	CRISPR spacer
gctacctaatcagccactttctgct---ctttaca	Protospacer
  ** ** *****************   ****

14. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MG873442 (Salmonella phage SE131, complete genome) position: , mismatch: 7, identity: 0.781

tgtagctt----atcagccactttctgctggccttt	CRISPR spacer
----gcttcgcactcagacactttctgctgggcttt	Protospacer
    ****     **** ************* ****

15. spacer 4.3|1013862|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KP063903 (Bacillus phage BalMu-1 copy 2, complete genome) position: , mismatch: 7, identity: 0.781

tgaacaacgttcgctcgaactcgaacagcaac	CRISPR spacer
tcaacaacgcccgctcgaactcgaattcgaac	Protospacer
* *******..**************.   ***

16. spacer 4.3|1013862|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KP063902 (Bacillus phage BalMu-1 copy 1, complete genome) position: , mismatch: 7, identity: 0.781

tgaacaacgttcgctcgaactcgaacagcaac	CRISPR spacer
tcaacaacgcccgctcgaactcgaattcgaac	Protospacer
* *******..**************.   ***

17. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
gatcgcgatgattgatgagaacgtcaatcaaa	Protospacer
 **************** **.*******   .

18. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
gatcgcgatgattgatgagaacgtcaatcaaa	Protospacer
 **************** **.*******   .

19. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047220 (Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

-tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
acgtc-cgatgatcgatgcgagcgtctatatcc	Protospacer
 ..** *******.************ ****.

20. spacer 4.1|1013742|32|NC_017068|CRISPRCasFinder,CRT matches to NZ_CP030854 (Runella sp. HYN0085 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aaagaaaagattaatcatgtctctgccgtttc	CRISPR spacer
taccaaaagactaatcatgtctatgccggtgt	Protospacer
 *  ******.*********** ***** * .

21. spacer 4.3|1013862|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75

tgaacaacgttcgctcgaactcgaacagcaac	CRISPR spacer
ctcagacggttcgctcgaactcgaaccggaac	Protospacer
.  * *  ****************** * ***

22. spacer 4.5|1013982|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_017078 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence) position: , mismatch: 8, identity: 0.75

aacagcccccaccgtgcctgtgaccttgcctg	CRISPR spacer
ggccaggcccaccgtgcccgtgaccttgccgg	Protospacer
..* .  ***********.*********** *

23. spacer 4.5|1013982|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_015162 (Deinococcus proteolyticus MRP plasmid pDEIPR02, complete sequence) position: , mismatch: 8, identity: 0.75

aacagcccccaccgtgcctgtgacctt--gcctg	CRISPR spacer
tgtggcccccactgtgactgtgaccttcagcc--	Protospacer
 ...********.*** **********  ***

24. spacer 4.7|1014102|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MK448721 (Streptococcus phage Javan263, complete genome) position: , mismatch: 8, identity: 0.75

-gtaataatcaagcggtaaaaagtcaatcctgc	CRISPR spacer
tatga-aatcaagcggttaaaagacaatcaaac	Protospacer
 .*.* *********** ***** *****  .*

25. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134422 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 13) position: , mismatch: 8, identity: 0.75

agcagaagaaaaagcaaagttggagtttgagt--	CRISPR spacer
agcagaagaaaaggcaaggttggaa--caaatta	Protospacer
************.****.******.  ..*.*

26. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KT160311 (Vibrio phage H188, complete genome) position: , mismatch: 8, identity: 0.75

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
tgcagaagaaaaagcaaagcttgacgcagagc	Protospacer
 ******************.* **  . ***.

27. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MG592392 (Vibrio phage 1.005.O._10N.286.48.F2, partial genome) position: , mismatch: 8, identity: 0.75

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
cgcagaagaaaaagcaaagattgaagcagaga	Protospacer
 ****************** * **. . ***

28. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KF302033 (UNVERIFIED: Pseudoalteromonas phage HS1, complete genome) position: , mismatch: 8, identity: 0.75

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
aaaggcgatgattgatgcgggcgttaaaagcg	Protospacer
 *  ***************.****.** * .*

29. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MN101219 (Klebsiella phage KOX6, complete genome) position: , mismatch: 8, identity: 0.75

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
tatcccgatgattgatgccagcgcagctctcg	Protospacer
**** ************* ****. . * *.*

30. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KF302032 (UNVERIFIED: Pseudoalteromonas phage HS5, complete genome) position: , mismatch: 8, identity: 0.75

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
aaaggcgatgattgatgcgggcgttaaaagcg	Protospacer
 *  ***************.****.** * .*

31. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MN101220 (Klebsiella phage KOX7, complete genome) position: , mismatch: 8, identity: 0.75

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
tatcccgatgattgatgccagcgcagctctcg	Protospacer
**** ************* ****. . * *.*

32. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to HM588722 (Pseudoalteromonas phage H105/1, complete genome) position: , mismatch: 8, identity: 0.75

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
aaaggcgatgattgatgcgggcgttaaaagcg	Protospacer
 *  ***************.****.** * .*

33. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MN101217 (Klebsiella phage KOX4, complete genome) position: , mismatch: 8, identity: 0.75

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
tatcccgatgattgatgccagcgcagctctcg	Protospacer
**** ************* ****. . * *.*

34. spacer 4.24|1015124|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 8, identity: 0.75

gcatcccgtggttcggtcgtcgcttggcatcc	CRISPR spacer
gaaggatgtggttcggtcgtcgcttgcgatcg	Protospacer
* *   .*******************  ***

35. spacer 4.24|1015124|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

gcatcccgtggttcggtcgtcgcttggcatcc	CRISPR spacer
gatcgcggtggtgcggtcctcgcttggcatcg	Protospacer
*  . * ***** ***** ************

36. spacer 4.24|1015124|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_019555 (Agrobacterium tumefaciens strain F64/95 plasmid pAoF64/95, complete sequence) position: , mismatch: 8, identity: 0.75

gcatcccgtggttcggtcgtcgcttggcatcc	CRISPR spacer
gaaggatgtggttcggtcgtcgcttgcgatcg	Protospacer
* *   .*******************  ***

37. spacer 4.27|1015304|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_009926 (Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence) position: , mismatch: 8, identity: 0.75

tatgcaacggcggtggaaattctggttgagta	CRISPR spacer
gatgcaacggcggaggaaattgtggccgcggc	Protospacer
 ************ ******* ***..* *

38. spacer 4.32|1015605|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to AP014236 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S25-C36, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

--taatgtgctttttttgtctgtcattttccccg	CRISPR spacer
gccaactt--tttttttgcctgtcattttcacca	Protospacer
  .**. *  ********.*********** **.

39. spacer 4.32|1015605|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to AP014237 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C95A-MedDCM-OCT-S45-C87, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

--taatgtgctttttttgtctgtcattttccccg	CRISPR spacer
gccaactt--tttttttgcctgtcattttcacca	Protospacer
  .**. *  ********.*********** **.

40. spacer 3.1|687076|38|NC_017068|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.763

cgtcaccatcggcaccttcgtcaagcggttaagacacc	CRISPR spacer
ttttagtgttggccccttggtcaagcggttaagacacc	Protospacer
. *.* ..*.*** **** *******************

41. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MF417942 (Uncultured Caudovirales phage clone 7F_6, partial genome) position: , mismatch: 9, identity: 0.719

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
actctccgttcagccacttgctgcttgccttt	Protospacer
  *  *.  ********** ***** ******

42. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MF417876 (Uncultured Caudovirales phage clone 3F_6, partial genome) position: , mismatch: 9, identity: 0.719

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
actctccgttcagccacttgctgcttgccttt	Protospacer
  *  *.  ********** ***** ******

43. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MF417869 (Uncultured Caudovirales phage clone 3S_4, partial genome) position: , mismatch: 9, identity: 0.719

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
actctccgttcagccacttgctgcttgccttt	Protospacer
  *  *.  ********** ***** ******

44. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MF417877 (Uncultured Caudovirales phage clone 9F_7, partial genome) position: , mismatch: 9, identity: 0.719

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
actctccgttcagccacttgctgcttgccttt	Protospacer
  *  *.  ********** ***** ******

45. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MF417878 (Uncultured Caudovirales phage clone 8S_7, partial genome) position: , mismatch: 9, identity: 0.719

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
actctccgttcagccacttgctgcttgccttt	Protospacer
  *  *.  ********** ***** ******

46. spacer 4.5|1013982|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045352 (Vibrio sp. THAF100 plasmid pTHAF100_b, complete sequence) position: , mismatch: 9, identity: 0.719

aacagcccccaccgtgcctgtgaccttgcctg	CRISPR spacer
tttaccatccacaatgcctgtgaccttgcctt	Protospacer
  .* * .**** .*****************

47. spacer 4.7|1014102|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007001 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence) position: , mismatch: 9, identity: 0.719

gtaataatcaagcggtaaaaagtcaatcctgc	CRISPR spacer
gcgatcatcaagcggtataaagtcaatgagtg	Protospacer
*..** *********** *********

48. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KR093640 (Moraxella phage Mcat16, complete genome) position: , mismatch: 9, identity: 0.719

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
tgctgaagaaaaagcaaagttagaagaagcgc	Protospacer
 ** *****************.**.   * *.

49. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KR093641 (Moraxella phage Mcat17, complete genome) position: , mismatch: 9, identity: 0.719

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
tgctgaagaaaaagcaaagttagaaaaagcgc	Protospacer
 ** *****************.**.   * *.

50. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MK473373 (Pseudomonas phage Lana, complete genome) position: , mismatch: 9, identity: 0.719

agcagaagaaaaagcaaagttgg--agtttgagt	CRISPR spacer
ggcacaagaaaaagccaagttggacaaactgg--	Protospacer
.*** ********** *******  *. .**.

51. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MG592441 (Vibrio phage 1.063.O._10N.261.45.C7, partial genome) position: , mismatch: 9, identity: 0.719

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
tgctcaagagaaagcaaagttagagtttagta	Protospacer
 **  ****.***********.******..

52. spacer 4.10|1014282|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KR093639 (Moraxella phage Mcat15, complete genome) position: , mismatch: 9, identity: 0.719

agcagaagaaaaagcaaagttggagtttgagt	CRISPR spacer
tgctgaagaaaaagcaaagttagaagaagcgc	Protospacer
 ** *****************.**.   * *.

53. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 9, identity: 0.719

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
catcgcgatgatggatgcgcgcgttgccctgg	Protospacer
.*********** ****** ****.. . * *

54. spacer 4.12|1014402|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 9, identity: 0.719

tatcgcgatgattgatgcgagcgtcaatattg	CRISPR spacer
catcgcgatgatggatgcgcgcgttgccctgg	Protospacer
.*********** ****** ****.. . * *

55. spacer 4.22|1015004|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 9, identity: 0.719

aaaatcggaaaagtttgcattaggtgcagata	CRISPR spacer
tagaatactaaagtattcattaggtgcagata	Protospacer
 *.* ..  ***** * ***************

56. spacer 4.23|1015064|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 9, identity: 0.719

gattacctcacgccagtctgcgacgtgataag	CRISPR spacer
gccgacctcacgccactctgcggcgtgttcga	Protospacer
* . *********** ******.**** * ..

57. spacer 4.27|1015304|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

tatgcaacggcggtggaaattctggttgagta	CRISPR spacer
aatgcagctgcggtggaaattctgatactaaa	Protospacer
 *****.* ***************.*   . *

58. spacer 4.29|1015424|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MT708546 (Rhizobium phage Paso, complete genome) position: , mismatch: 9, identity: 0.719

agtatggctgaaatcatgggcttccaaaaagc	CRISPR spacer
atcgacgtcgaaatcatcggcttccaagaagc	Protospacer
* ..  *..******** *********.****

59. spacer 4.33|1015665|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to KY821088 (Bacillus phage Harambe, complete genome) position: , mismatch: 9, identity: 0.719

acacatcaacttgagcaccacattcgcacctg	CRISPR spacer
ttacatcaacttgaccaccacattctatgcaa	Protospacer
 .************ **********    * .

60. spacer 4.34|1015725|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MG655267 (Erwinia phage vB_EamM_Bosolaphorus, complete genome) position: , mismatch: 9, identity: 0.719

tttacgctttgggctgtgtcagagtccaacga	CRISPR spacer
cgtacgcttcggggtgtgtcagagtataagtg	Protospacer
. *******.*** *********** .**  .

61. spacer 4.34|1015725|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MG655269 (Erwinia phage vB_EamM_MadMel, complete genome) position: , mismatch: 9, identity: 0.719

tttacgctttgggctgtgtcagagtccaacga	CRISPR spacer
cgtacgcttcggggtgtgtcagagtataagtg	Protospacer
. *******.*** *********** .**  .

62. spacer 3.1|687076|38|NC_017068|CRISPRCasFinder matches to NZ_CP016544 (Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence) position: , mismatch: 10, identity: 0.737

cgtcaccatcggcaccttcgtcaagcggttaagacacc	CRISPR spacer
tattatgcaaggccccttggtcaagcggttaagacacc	Protospacer
..*.*.    *** **** *******************

63. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010589 (Phaeobacter gallaeciensis strain P11 plasmid pP11_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

64. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010612 (Phaeobacter inhibens strain P92 plasmid pP92_b, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

65. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010624 (Phaeobacter inhibens strain P51 plasmid pP51_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

66. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010669 (Phaeobacter inhibens strain P57 plasmid pP57_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

67. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021041 (Phaeobacter gallaeciensis strain P129 plasmid pP129_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
taggcggtatgaaccactttctgctggcctcc	Protospacer
*. .   *** *.*****************..

68. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010674 (Phaeobacter gallaeciensis strain P75 plasmid pP75_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

69. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_023138 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_A255, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

70. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010630 (Phaeobacter inhibens strain P78 plasmid pP78_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

71. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031953 (Phaeobacter inhibens strain 2.10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

72. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_018421 (Phaeobacter inhibens 2.10 plasmid pPGA2_239, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

73. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010600 (Phaeobacter inhibens strain P83 plasmid pP83_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

74. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010618 (Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

75. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010726 (Phaeobacter inhibens strain P88 plasmid pP88_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

76. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010637 (Phaeobacter gallaeciensis strain P73 plasmid pP73_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

77. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010651 (Phaeobacter inhibens strain P54 plasmid pP54_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

78. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010706 (Phaeobacter inhibens strain P66 plasmid pP66_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

79. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010697 (Phaeobacter inhibens strain P24 plasmid pP24_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

80. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010746 (Phaeobacter inhibens strain P48 isolate M21-2.3 plasmid pP48_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

81. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019308 (Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-1, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

82. spacer 4.2|1013802|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010736 (Phaeobacter inhibens strain P72 plasmid pP72_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgtagcttatcagccactttctgctggccttt	CRISPR spacer
tcggcggtatgaaccactttctgctggcctcc	Protospacer
*  .   *** *.*****************..

83. spacer 4.7|1014102|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MK448890 (Streptococcus phage Javan264, complete genome) position: , mismatch: 10, identity: 0.688

gtaataatcaagcggtaaaaagtcaatcctgc	CRISPR spacer
tacgaaatcaagcggttaaaagacaatcaaac	Protospacer
   . *********** ***** *****  .*

84. spacer 4.8|1014162|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 10, identity: 0.688

tgttgaaccatcacccaaccacacaccgagaa	CRISPR spacer
tcagccaccatcaccccgccacacaccgaagc	Protospacer
*     ********** .***********..

85. spacer 4.8|1014162|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 10, identity: 0.688

tgttgaaccatcacccaaccacacaccgagaa	CRISPR spacer
tcagccaccatcaccccgccacacaccgaagc	Protospacer
*     ********** .***********..

86. spacer 4.8|1014162|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 10, identity: 0.688

tgttgaaccatcacccaaccacacaccgagaa	CRISPR spacer
tcagccaccatcaccccgccacacaccgaagc	Protospacer
*     ********** .***********..

87. spacer 4.9|1014222|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_015855 (Pseudomonas putida plasmid pGRT1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcgaatcttcgtccatgaattgcaatttat	CRISPR spacer
aaccgcatcgtcgtccatgaattgcagggtgc	Protospacer
   ** *** ****************.  *..

88. spacer 4.19|1014824|32|NC_017068|CRISPRCasFinder,CRT matches to NC_042040 (Rhodococcus phage Trina, complete genome) position: , mismatch: 10, identity: 0.688

tgcaactttcgatgcagcagcatcagcccatc	CRISPR spacer
agtaactttcagtgcagcagcatcagtagcaa	Protospacer
 *.*******..**************.

89. spacer 4.27|1015304|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

tatgcaacggcggtggaaattctggttgagta	CRISPR spacer
gcggcaacggcggtggaaatagtggtggtaat	Protospacer
   *****************  **** * .

90. spacer 4.27|1015304|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

tatgcaacggcggtggaaattctggttgagta	CRISPR spacer
gcggcaacggcggtggaaatggtggtggtaat	Protospacer
   *****************  **** * .

91. spacer 4.28|1015364|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.688

attgtttgctcgacttgataaacaggcattat	CRISPR spacer
gccaactgctcgacttgataagcagacatctt	Protospacer
.... .***************.***.***. *

92. spacer 4.28|1015364|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 10, identity: 0.688

attgtttgctcgacttgataaacaggcattat	CRISPR spacer
tctgtttgatcgactggataaacagcggattc	Protospacer
 .****** ****** *********  . * .

93. spacer 4.28|1015364|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 10, identity: 0.688

attgtttgctcgacttgataaacaggcattat	CRISPR spacer
tctgtttgatcgactggataaacagcggattc	Protospacer
 .****** ****** *********  . * .

94. spacer 4.28|1015364|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NC_024792 (Bacillus phage Bobb, complete genome) position: , mismatch: 10, identity: 0.688

attgtttgctcgacttgataaacaggcattat	CRISPR spacer
aatggttgctcaacttgataaacagtttgcgg	Protospacer
* ** ******.************* .  ..

95. spacer 4.29|1015424|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to MN310372 (Pseudomonas putida strain 150716811 plasmid p716811-VIM, complete sequence) position: , mismatch: 10, identity: 0.688

agtatggctgaaatcatgggcttccaaaaagc	CRISPR spacer
gccctggctgaaagcatcggcttccaaggcac	Protospacer
. . ********* *** *********.. .*

96. spacer 4.20|1014884|32|NC_017068|CRISPRCasFinder,CRT matches to NC_013783 (Lactococcus lactis subsp. lactis plasmid pAR141, complete sequence) position: , mismatch: 11, identity: 0.656

tgctgcaaccatttcttatatcttttccgaca	CRISPR spacer
gatctcaaccattttttatattttttcccttc	Protospacer
 ... *********.******.******  .

97. spacer 4.32|1015605|32|NC_017068|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029457 (Bacillus cereus strain FORC087 plasmid pFORC087.3, complete sequence) position: , mismatch: 11, identity: 0.656

taatgtgctttttttgtctgtcattttccccg	CRISPR spacer
gctcctgctttgtttgtctgttattttcatta	Protospacer
   . ****** *********.****** ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

299678 : 325002

Clostridium_botulinum_C_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014423415.1\|299678_300872_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q331Z4	Clostridium_botulinum_C_phage	7.6e-138	63.1
WP_014423416.1\|300834_301467_-\|transposase	IS607 family transposase	Q331Z3	Clostridium_botulinum_C_phage	3.8e-80	74.2
WP_014423417.1\|302013_302166_-	YvrJ family protein	NA	NA	NA	NA
WP_041914218.1\|302167_302386_-	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_014423419.1\|302414_302630_-	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_041914219.1\|303169_303727_+	hypothetical protein	NA	NA	NA	NA
WP_014423422.1\|303723_304155_+	hypothetical protein	NA	NA	NA	NA
WP_014423423.1\|304151_304562_+	hypothetical protein	NA	NA	NA	NA
WP_014423424.1\|304901_305819_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_014423425.1\|305883_306540_+\|transposase	IS607 family transposase	Q331Z3	Clostridium_botulinum_C_phage	3.7e-54	53.1
WP_014423426.1\|306487_307789_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	D2XQ03	Bacillus_virus	1.5e-91	43.0
WP_158645763.1\|308005_311200_+	hypothetical protein	NA	NA	NA	NA
WP_158645764.1\|311225_312884_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_014423429.1\|312961_313936_-	hypothetical protein	NA	NA	NA	NA
WP_014423430.1\|314483_315335_+	flagellin	NA	NA	NA	NA
WP_014423432.1\|315737_318848_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.2e-55	25.1
WP_014423433.1\|318857_320192_+	MATE family efflux transporter	NA	NA	NA	NA
WP_014423434.1\|320259_321555_-	MFS transporter	NA	NA	NA	NA
WP_014423435.1\|321902_323204_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	D2XQ03	Bacillus_virus	8.9e-92	44.4
WP_014423436.1\|323419_324091_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.8e-56	51.6
WP_014423437.1\|324087_325002_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	7.8e-58	50.0

DBSCAN-SWA_2

652275 : 663697

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167538843.1\|652275_652923_+	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	1.6e-09	29.2
WP_014423733.1\|652915_654433_+	hypothetical protein	NA	NA	NA	NA
WP_041914247.1\|654435_655215_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_014423735.1\|655214_656276_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.9e-15	26.9
WP_014423736.1\|656287_656578_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	2.7e-09	38.5
WP_014423737.1\|656570_656921_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	5.7e-09	38.6
WP_014423738.1\|657019_658330_+	lipopolysaccharide biosynthesis protein RfbH	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	3.0e-47	32.4
WP_014423739.1\|658329_659250_+	NAD(P)-dependent oxidoreductase	M1H6P3	Paramecium_bursaria_Chlorella_virus	1.1e-06	27.6
WP_041914249.1\|659246_659801_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.5e-27	36.9
WP_014423741.1\|659811_660939_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014423742.1\|660970_662380_+	HAD-IIIA family hydrolase	NA	NA	NA	NA
WP_014423743.1\|662467_663697_+	nucleotide sugar dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.5e-101	51.8

DBSCAN-SWA_3

799996 : 805368

Mollivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014423892.1\|799996_800866_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	5.1e-43	35.1
WP_014423893.1\|801081_801567_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.6e-22	44.6
WP_014423894.1\|801633_803076_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.7e-62	34.4
WP_014423895.1\|803097_804150_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.9e-71	45.1
WP_014423896.1\|804142_804751_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.3e-28	41.3
WP_014423897.1\|804774_805368_+	IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	3.2e-52	57.8

DBSCAN-SWA_4

1169924 : 1221944

Clostridium_phage(20.83%)

transposase,protease,capsid,tRNA,terminase,head,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014424218.1\|1169924_1170209_-\|transposase	transposase	NA	NA	NA	NA
WP_041914593.1\|1170538_1170754_+	DUF3791 domain-containing protein	NA	NA	NA	NA
WP_041914279.1\|1170750_1171230_+	DUF3990 domain-containing protein	A0A0H3UZB3	Geobacillus_virus	1.0e-05	26.6
WP_014424220.1\|1171233_1171464_+	hypothetical protein	NA	NA	NA	NA
WP_014424221.1\|1171484_1171976_+	hypothetical protein	NA	NA	NA	NA
WP_014424222.1\|1172042_1172921_-	hypothetical protein	NA	NA	NA	NA
WP_014424223.1\|1173057_1173687_-	lactate utilization protein	NA	NA	NA	NA
WP_014424225.1\|1174178_1175900_+	DUF4153 domain-containing protein	NA	NA	NA	NA
WP_014424226.1\|1175957_1176788_-	polysaccharide deacetylase family protein	G3MB53	Bacillus_virus	6.7e-08	29.1
WP_014424227.1\|1176870_1177740_-	hypothetical protein	NA	NA	NA	NA
WP_014424229.1\|1178298_1179267_+	P1 family peptidase	NA	NA	NA	NA
WP_014424230.1\|1179350_1180274_+	hypothetical protein	NA	NA	NA	NA
WP_014424231.1\|1180585_1180867_+	HTH domain-containing protein	NA	NA	NA	NA
WP_014424232.1\|1180889_1181387_+	hypothetical protein	NA	NA	NA	NA
WP_014424233.1\|1181490_1182711_+	hypothetical protein	NA	NA	NA	NA
WP_014424234.1\|1182921_1184535_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.5e-115	47.2
WP_014424235.1\|1184537_1185770_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.1e-06	26.8
WP_014424236.1\|1185791_1186805_+	DUF1016 family protein	Q9JMP5	Wolbachia_phage	1.1e-36	30.9
WP_014424237.1\|1186825_1189858_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.7e-21	22.2
WP_014424238.1\|1190077_1193731_+	hypothetical protein	NA	NA	NA	NA
WP_014424239.1\|1194077_1194680_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_041914596.1\|1194719_1195724_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.1e-09	24.8
WP_014424241.1\|1195732_1196362_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_014424242.1\|1196358_1197534_+	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	6.1e-23	33.7
WP_014424243.1\|1197550_1198645_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_014424244.1\|1198692_1200393_-	recombinase family protein	A0A2K9V3K8	Faecalibacterium_phage	3.8e-135	45.6
WP_014424245.1\|1200580_1200763_+	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	7.0e-11	50.0
WP_014424246.1\|1200793_1201192_+	type II toxin-antitoxin system HicB family antitoxin	A0A0C5AN56	Paenibacillus_phage	1.4e-27	47.3
WP_014424247.1\|1202232_1203069_-	hypothetical protein	NA	NA	NA	NA
WP_102013410.1\|1203165_1203582_-	helix-turn-helix transcriptional regulator	A0A1L2BY72	Clostridium_phage	2.3e-09	45.9
WP_050992742.1\|1203719_1203929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014424249.1\|1204072_1205050_-	hypothetical protein	X2KQX9	Campylobacter_phage	9.8e-59	40.7
WP_080585423.1\|1205208_1205445_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014424250.1\|1205416_1205599_+	hypothetical protein	NA	NA	NA	NA
WP_014424251.1\|1205763_1206033_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014424252.1\|1206141_1206495_-	hypothetical protein	NA	NA	NA	NA
WP_014424253.1\|1206582_1206963_-	hypothetical protein	NA	NA	NA	NA
WP_014424254.1\|1207080_1207233_+	hypothetical protein	NA	NA	NA	NA
WP_014424255.1\|1207317_1207578_+	hypothetical protein	NA	NA	NA	NA
WP_014424257.1\|1207741_1207903_+	hypothetical protein	NA	NA	NA	NA
WP_050992743.1\|1208288_1208957_+	hypothetical protein	H7BW41	unidentified_phage	2.7e-23	44.1
WP_041914285.1\|1208874_1209642_+	ParA family protein	H7BUL8	unidentified_phage	6.5e-42	40.9
WP_014424260.1\|1209644_1211063_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_158645827.1\|1211158_1211398_+	hypothetical protein	A0A0A8WEK0	Clostridium_phage	5.8e-05	62.2
WP_014424262.1\|1211419_1211995_+	hypothetical protein	NA	NA	NA	NA
WP_014424263.1\|1212212_1212500_+	hypothetical protein	NA	NA	NA	NA
WP_014424264.1\|1212487_1212667_+	hypothetical protein	NA	NA	NA	NA
WP_014424265.1\|1212650_1212851_+	hypothetical protein	NA	NA	NA	NA
WP_014424266.1\|1213309_1213501_+	hypothetical protein	NA	NA	NA	NA
WP_014424268.1\|1214069_1214393_+	HNH endonuclease	J9QDZ3	Clostridium_phage	4.7e-18	42.1
WP_014424269.1\|1214455_1214848_+	hypothetical protein	A0A290GJQ7	Caldibacillus_phage	5.0e-14	39.0
WP_014424270.1\|1214855_1216544_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.6e-210	63.7
WP_050992794.1\|1216607_1217729_+\|portal	phage portal protein	A0A1L2BY94	Clostridium_phage	3.4e-124	58.7
WP_014424272.1\|1217728_1218439_+\|protease	Clp protease ClpP	A0A0A7RTN2	Clostridium_phage	1.8e-38	40.6
WP_014424273.1\|1218435_1218576_+	hypothetical protein	NA	NA	NA	NA
WP_014424274.1\|1218572_1219829_+\|capsid	phage major capsid protein	A0A290FZS5	Caldibacillus_phage	9.3e-86	41.8
WP_014424275.1\|1219847_1220186_+\|head,tail	phage gp6-like head-tail connector protein	A0A0S2GLH6	Bacillus_phage	3.9e-07	33.7
WP_080585424.1\|1220182_1220569_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_014424277.1\|1220552_1221011_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_014424278.1\|1221012_1221399_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014424279.1\|1221386_1221944_+\|tail	phage major tail protein, phi13 family	A0A2K5B294	Erysipelothrix_phage	3.0e-20	34.0

DBSCAN-SWA_5

1469538 : 1511306

Erysipelothrix_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014424536.1\|1469538_1470777_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.1e-50	51.1
WP_050992754.1\|1470908_1473911_-	MobA/MobL family protein	NA	NA	NA	NA
WP_014424539.1\|1474195_1474444_+	hypothetical protein	NA	NA	NA	NA
WP_014424540.1\|1474447_1474822_+	hypothetical protein	NA	NA	NA	NA
WP_014424541.1\|1474818_1477104_+	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	3.3e-49	33.9
WP_014424542.1\|1477319_1477667_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_158645786.1\|1477663_1477969_+	hypothetical protein	NA	NA	NA	NA
WP_014424544.1\|1477987_1478182_+	hypothetical protein	NA	NA	NA	NA
WP_050992755.1\|1478283_1480143_+	recombinase family protein	A0A2I4R675	Erysipelothrix_phage	6.7e-125	44.1
WP_014424546.1\|1480147_1482313_+	recombinase family protein	A0A2I4R675	Erysipelothrix_phage	8.4e-103	38.2
WP_102013469.1\|1483597_1484230_+	hypothetical protein	NA	NA	NA	NA
WP_014424549.1\|1484471_1485032_+	HD domain-containing protein	NA	NA	NA	NA
WP_158645787.1\|1485137_1485281_+	hypothetical protein	NA	NA	NA	NA
WP_041914660.1\|1486389_1486773_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_014424552.1\|1487004_1487265_+\|transposase	transposase	NA	NA	NA	NA
WP_050992756.1\|1487261_1488176_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.6e-39	35.5
WP_014424554.1\|1488286_1488868_+	hypothetical protein	NA	NA	NA	NA
WP_041914320.1\|1490563_1490860_+	hypothetical protein	NA	NA	NA	NA
WP_041914321.1\|1490899_1491427_+	hypothetical protein	NA	NA	NA	NA
WP_014424556.1\|1491481_1492333_+	hypothetical protein	NA	NA	NA	NA
WP_014424557.1\|1492476_1492779_+\|transposase	transposase	NA	NA	NA	NA
WP_014424558.1\|1492727_1493624_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014424559.1\|1493697_1494150_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014424560.1\|1494371_1494854_+	CYTH domain-containing protein	I6YXR6	Aeromonas_phage	9.8e-12	36.4
WP_014424561.1\|1494869_1495181_+	DUF1653 domain-containing protein	NA	NA	NA	NA
WP_014424562.1\|1495414_1496017_-	hypothetical protein	NA	NA	NA	NA
WP_014424563.1\|1496033_1496411_-	hypothetical protein	NA	NA	NA	NA
WP_041914322.1\|1496781_1497051_+	hypothetical protein	NA	NA	NA	NA
WP_014424566.1\|1497339_1497561_+	hypothetical protein	NA	NA	NA	NA
WP_014424567.1\|1497579_1498257_+	hypothetical protein	NA	NA	NA	NA
WP_014424568.1\|1498572_1499088_+	hypothetical protein	NA	NA	NA	NA
WP_014424569.1\|1499114_1499654_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_158645788.1\|1499650_1499815_+	hypothetical protein	NA	NA	NA	NA
WP_014424572.1\|1499992_1501663_+	sel1 repeat family protein	NA	NA	NA	NA
WP_014424573.1\|1501682_1502225_+	DUF1266 domain-containing protein	NA	NA	NA	NA
WP_158645789.1\|1502369_1503125_+	hypothetical protein	NA	NA	NA	NA
WP_014424575.1\|1503118_1503424_+	hypothetical protein	NA	NA	NA	NA
WP_014424576.1\|1503441_1503759_+	hypothetical protein	NA	NA	NA	NA
WP_158645790.1\|1503893_1504667_+	hypothetical protein	NA	NA	NA	NA
WP_014424578.1\|1504669_1505044_+	hypothetical protein	NA	NA	NA	NA
WP_014424579.1\|1505154_1505466_+	CbrC family protein	NA	NA	NA	NA
WP_041914324.1\|1505473_1505806_+	hypothetical protein	NA	NA	NA	NA
WP_014424581.1\|1506047_1506422_+	hypothetical protein	NA	NA	NA	NA
WP_014424582.1\|1506451_1506844_+	hypothetical protein	NA	NA	NA	NA
WP_041914325.1\|1506889_1507177_+	DUF1810 family protein	NA	NA	NA	NA
WP_014424584.1\|1507400_1508024_+	hypothetical protein	NA	NA	NA	NA
WP_014424585.1\|1508309_1508534_+	hypothetical protein	NA	NA	NA	NA
WP_014424586.1\|1508680_1509460_+	cyclase family protein	NA	NA	NA	NA
WP_014423436.1\|1509723_1510395_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.8e-56	51.6
WP_014423437.1\|1510391_1511306_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	7.8e-58	50.0

DBSCAN-SWA_6

1560121 : 1571481

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014424641.1\|1560121_1560994_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.6e-97	60.6
WP_014424642.1\|1561011_1561572_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-41	47.3
WP_014424643.1\|1561595_1562639_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.7e-83	47.9
WP_014424644.1\|1562917_1566754_-	PolC-type DNA polymerase III	A0A2D0ZM71	Rhodococcus_phage	2.2e-21	28.4
WP_014424645.1\|1566836_1567448_-	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	8.1e-19	45.4
WP_014424648.1\|1568871_1571481_-	DNA polymerase I	F8WQ35	Bacillus_phage	9.6e-61	37.6

DBSCAN-SWA_7

1680627 : 1798587

113

Vibrio_phage(13.51%)

holin,transposase,protease,integrase,tRNA,plate,tail

attL 1730015:1730031|attR 1754717:1754733

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014423221.1\|1680627_1682103_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_014424753.1\|1682529_1683453_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_041914689.1\|1683462_1684332_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_014424755.1\|1684346_1685297_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_014424756.1\|1685302_1685683_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_014424757.1\|1685717_1688186_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.0e-28	24.4
WP_014424758.1\|1688206_1688527_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA
WP_014424759.1\|1688529_1688811_-	YlxR family protein	NA	NA	NA	NA
WP_014424760.1\|1688812_1689949_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_014424761.1\|1689984_1690440_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_014424762.1\|1690715_1691951_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_014424763.1\|1691983_1692967_-	TIGR01212 family radical SAM protein	NA	NA	NA	NA
WP_014424764.1\|1692963_1694745_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_014424767.1\|1695507_1696956_-	beta-Ala-His dipeptidase	NA	NA	NA	NA
WP_102013472.1\|1697047_1697578_-	cell division protein SepF	NA	NA	NA	NA
WP_041914690.1\|1697777_1699598_-	translational GTPase TypA	NA	NA	NA	NA
WP_014424770.1\|1699729_1700482_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	2.4e-57	47.3
WP_014424771.1\|1700498_1701020_-	signal peptidase I	NA	NA	NA	NA
WP_014424772.1\|1701101_1701443_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_014424773.1\|1701582_1702308_-	NADH-quinone oxidoreductase subunit NuoB	NA	NA	NA	NA
WP_014424774.1\|1702323_1703856_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_014424775.1\|1703855_1705346_-	hydrogenase 4 subunit F	NA	NA	NA	NA
WP_014424776.1\|1705354_1705981_-	hydrogenase-4 component E	NA	NA	NA	NA
WP_014424777.1\|1705991_1706867_-	NADH-quinone oxidoreductase subunit H	NA	NA	NA	NA
WP_102013421.1\|1706870_1708874_-	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA
WP_014424779.1\|1708966_1709152_-	hypothetical protein	NA	NA	NA	NA
WP_014424780.1\|1709151_1710333_-	type III PLP-dependent enzyme	A0A1V0SKK0	Klosneuvirus	1.3e-41	30.9
WP_014424781.1\|1710556_1710748_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_014424782.1\|1710881_1711868_+\|integrase	site-specific integrase	A0A2I7R1N2	Vibrio_phage	1.0e-18	27.7
WP_014424783.1\|1711925_1713590_-	biosynthetic-type acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	2.3e-60	31.2
WP_014424784.1\|1713592_1714660_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_014424785.1\|1714672_1715161_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_014424786.1\|1715162_1716425_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_014424787.1\|1716549_1717566_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_014424788.1\|1717546_1718077_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_014424789.1\|1718452_1719556_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_158645829.1\|1719820_1721698_+	FIST C-terminal domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	7.3e-10	43.0
WP_014424791.1\|1721757_1722648_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014424792.1\|1722744_1724133_-	DNA repair protein RadA	NA	NA	NA	NA
WP_014424794.1\|1724305_1726804_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.7e-126	38.6
WP_014424795.1\|1726806_1727886_-	ATP--guanido phosphotransferase	NA	NA	NA	NA
WP_014424796.1\|1727878_1728439_-	UvrB/UvrC motif-containing protein	NA	NA	NA	NA
WP_014424797.1\|1728451_1728904_-	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_014424798.1\|1729134_1729416_-	hypothetical protein	NA	NA	NA	NA
1730015:1730031	attL	NA	NA	NA	NA
WP_014424801.1\|1730213_1730378_-	hypothetical protein	NA	NA	NA	NA
WP_041914339.1\|1730374_1730833_-\|holin	phage holin family protein	M9Q253	Clostridium_phage	4.6e-19	44.8
WP_041914340.1\|1730885_1731143_+	hypothetical protein	H7BVE3	unidentified_phage	2.7e-16	50.5
WP_041914341.1\|1731174_1731903_+\|integrase	tyrosine-type recombinase/integrase	H7BVE3	unidentified_phage	1.7e-31	33.1
WP_014424804.1\|1732146_1732554_-	hypothetical protein	NA	NA	NA	NA
WP_014424805.1\|1732856_1734230_-\|tail	phage tail protein	A0A2K9V330	Faecalibacterium_phage	4.2e-15	37.9
WP_014424806.1\|1734222_1734867_-\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	9.7e-31	38.0
WP_014424807.1\|1734859_1735978_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	1.9e-90	49.6
WP_014424808.1\|1735974_1736289_-	GPW/gp25 family protein	A0A067ZJ13	Vibrio_phage	1.2e-15	44.7
WP_014424809.1\|1736285_1736816_-\|tail	phage tail protein	A0A067ZI88	Vibrio_phage	4.0e-14	43.8
WP_041914342.1\|1736819_1737110_-	PAAR domain-containing protein	A0A2I7QP29	Vibrio_phage	4.4e-07	56.6
WP_014424218.1\|1737401_1737686_+\|transposase	transposase	NA	NA	NA	NA
WP_041914343.1\|1737682_1738597_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-40	34.9
WP_014424812.1\|1738714_1738939_-	hypothetical protein	NA	NA	NA	NA
WP_014424813.1\|1739133_1739958_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041914344.1\|1740118_1740832_+	hypothetical protein	NA	NA	NA	NA
WP_014424815.1\|1741081_1741894_+	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	6.3e-35	34.7
WP_014424816.1\|1742220_1742496_-	hypothetical protein	NA	NA	NA	NA
WP_014424817.1\|1742606_1742822_+	hypothetical protein	NA	NA	NA	NA
WP_014424818.1\|1742870_1743830_+	hypothetical protein	A0A1S5SFA1	Streptococcus_phage	6.3e-34	30.5
WP_014424819.1\|1744114_1744330_+	nuclease	NA	NA	NA	NA
WP_014424820.1\|1744509_1745475_+	Abi family protein	A0A1S5S8T0	Streptococcus_phage	2.3e-76	46.9
WP_080585449.1\|1745613_1746000_+	recombinase family protein	A0A2P1JU08	Anoxybacillus_phage	3.1e-08	47.8
WP_158645793.1\|1745881_1746985_+	recombinase zinc beta ribbon domain-containing protein	K4ICM1	Acidithiobacillus_phage	2.0e-12	24.8
WP_014424822.1\|1746988_1747573_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_014424823.1\|1747574_1748291_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_014424824.1\|1748324_1749251_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_080585451.1\|1749247_1750036_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
WP_014424826.1\|1750007_1753235_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_014424827.1\|1753236_1754307_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.2e-56	36.7
WP_014424828.1\|1754325_1755615_-	dihydroorotase	NA	NA	NA	NA
1754717:1754733	attR	NA	NA	NA	NA
WP_014424829.1\|1755611_1756559_-	aspartate carbamoyltransferase catalytic subunit	M1I6M4	Paramecium_bursaria_Chlorella_virus	8.9e-33	34.2
WP_014424830.1\|1756897_1758910_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_014424831.1\|1758939_1760544_-	hypothetical protein	NA	NA	NA	NA
WP_014424832.1\|1760552_1761506_-	hypothetical protein	NA	NA	NA	NA
WP_014424833.1\|1761502_1762342_-	TIGR00159 family protein	NA	NA	NA	NA
WP_014424834.1\|1762534_1763557_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_014424835.1\|1763652_1765305_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_014424836.1\|1765406_1765943_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_014424837.1\|1766027_1767647_+	lipase	NA	NA	NA	NA
WP_102013473.1\|1767705_1769106_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_014424839.1\|1769105_1770299_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_014424840.1\|1770318_1771110_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_014424841.1\|1771307_1772453_+	acyltransferase	NA	NA	NA	NA
WP_014424842.1\|1772510_1773290_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.0e-14	29.4
WP_050992802.1\|1773289_1774279_-	iron ABC transporter permease	NA	NA	NA	NA
WP_014424844.1\|1774284_1775241_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014424845.1\|1775257_1775959_-	precorrin-2 C(20)-methyltransferase	NA	NA	NA	NA
WP_014424846.1\|1776103_1777096_-	sirohydrochlorin cobaltochelatase	NA	NA	NA	NA
WP_014424847.1\|1777566_1779081_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	8.5e-94	39.5
WP_014424848.1\|1779109_1779586_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_014424849.1\|1779731_1781618_-	glutamine synthetase	NA	NA	NA	NA
WP_014424850.1\|1782124_1782982_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_014424852.1\|1783391_1783883_+	DUF3990 domain-containing protein	NA	NA	NA	NA
WP_014424853.1\|1783879_1784131_+	hypothetical protein	NA	NA	NA	NA
WP_014424854.1\|1784267_1785569_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	D2XQ03	Bacillus_virus	8.4e-90	44.4
WP_014424855.1\|1785782_1786022_+	hypothetical protein	NA	NA	NA	NA
WP_014424856.1\|1786203_1787049_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_014424857.1\|1787134_1788217_-	NAD-dependent epimerase/dehydratase family protein	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	1.9e-26	28.2
WP_158645830.1\|1788234_1789518_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	4.2e-94	49.5
WP_014424859.1\|1789633_1790677_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-84	48.0
WP_014424860.1\|1790677_1791253_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	2.2e-42	48.6
WP_014424861.1\|1791267_1792140_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-99	59.6
WP_014424862.1\|1792181_1792913_-	caspase family protein	NA	NA	NA	NA
WP_014424863.1\|1792909_1793788_-	hypothetical protein	R9TPU4	Vibrio_phage	1.7e-14	26.6
WP_014424864.1\|1793857_1795210_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	6.3e-40	29.4
WP_014424865.1\|1795229_1796174_-	GDP-L-fucose synthase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	3.7e-95	55.7
WP_041914697.1\|1796188_1797496_-	cupin domain-containing protein	A0A1V0SH58	Hokovirus	3.6e-40	25.9
WP_014424867.1\|1797504_1798587_-	GDP-mannose 4,6-dehydratase	E5EQW4	Bathycoccus_sp._RCC1105_virus	1.5e-121	62.7

DBSCAN-SWA_8

1842863 : 1893240

Clostridium_phage(15.38%)

holin,transposase,protease,capsid,terminase,head,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014424909.1\|1842863_1844126_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	1.1e-91	44.8
WP_014424910.1\|1844109_1844712_-\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	3.8e-37	41.0
WP_014424912.1\|1844951_1845857_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014424913.1\|1845908_1846301_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_014424914.1\|1846327_1847299_-	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	4.6e-08	24.1
WP_014424915.1\|1847448_1849341_+	NAD(+) synthase	NA	NA	NA	NA
WP_014424916.1\|1849388_1850615_-	type II secretion system F family protein	NA	NA	NA	NA
WP_014424917.1\|1850598_1851660_-	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_014424918.1\|1851770_1852640_-	ROK family protein	NA	NA	NA	NA
WP_014424919.1\|1852707_1855272_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-84	30.8
WP_014424920.1\|1855285_1855594_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_014424921.1\|1855674_1856868_-	type II/IV secretion system protein	NA	NA	NA	NA
WP_014424922.1\|1856959_1857808_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_050992763.1\|1857804_1858533_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_014424924.1\|1858539_1859796_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_014424925.1\|1859792_1860746_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_014424926.1\|1861068_1863054_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.7e-15	51.5
WP_014424927.1\|1863672_1863909_-	hypothetical protein	NA	NA	NA	NA
WP_014424928.1\|1863982_1864618_-	DNA repair protein RadC	NA	NA	NA	NA
WP_014424929.1\|1864619_1865315_-	hypothetical protein	NA	NA	NA	NA
WP_014424930.1\|1865331_1865739_-	hypothetical protein	NA	NA	NA	NA
WP_014424931.1\|1865741_1865948_-	hypothetical protein	NA	NA	NA	NA
WP_158645795.1\|1866037_1866199_-	hypothetical protein	NA	NA	NA	NA
WP_014424932.1\|1866218_1866551_-	hypothetical protein	NA	NA	NA	NA
WP_041914350.1\|1866926_1867208_-	hypothetical protein	NA	NA	NA	NA
WP_041914351.1\|1867210_1867603_-	hypothetical protein	NA	NA	NA	NA
WP_014424934.1\|1867664_1867994_-	hypothetical protein	NA	NA	NA	NA
WP_014424936.1\|1868591_1869302_-	hypothetical protein	NA	NA	NA	NA
WP_014424937.1\|1869381_1869627_-	hypothetical protein	NA	NA	NA	NA
WP_014424938.1\|1869639_1870005_-	hypothetical protein	NA	NA	NA	NA
WP_014424939.1\|1870019_1870481_-	hypothetical protein	NA	NA	NA	NA
WP_014424940.1\|1870493_1870784_-	hypothetical protein	NA	NA	NA	NA
WP_014424941.1\|1870799_1871216_-	hypothetical protein	NA	NA	NA	NA
WP_080585454.1\|1872077_1872284_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_014424942.1\|1873154_1873430_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_014424943.1\|1873426_1873687_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_041914353.1\|1873793_1874027_-	hypothetical protein	NA	NA	NA	NA
WP_158645796.1\|1874400_1874619_-	hypothetical protein	NA	NA	NA	NA
WP_014424945.1\|1874699_1874903_-	hypothetical protein	NA	NA	NA	NA
WP_014424946.1\|1874902_1875460_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JV24	Vibrio_phage	7.4e-19	32.0
WP_014424947.1\|1875459_1875663_-	hypothetical protein	NA	NA	NA	NA
WP_041914355.1\|1875666_1876107_-\|holin	phage holin family protein	A0A0S2MVC4	Bacillus_phage	1.0e-15	43.2
WP_014424949.1\|1876123_1877344_-	hypothetical protein	NA	NA	NA	NA
WP_041914356.1\|1877340_1877604_-	hypothetical protein	NA	NA	NA	NA
WP_014424950.1\|1877604_1881843_-	hypothetical protein	NA	NA	NA	NA
WP_014424951.1\|1881856_1882249_-	hypothetical protein	NA	NA	NA	NA
WP_041914357.1\|1882253_1882652_-	hypothetical protein	NA	NA	NA	NA
WP_014424952.1\|1882655_1882997_-	hypothetical protein	NA	NA	NA	NA
WP_014424953.1\|1883008_1885741_-	hypothetical protein	A0A0U2BXT9	Paracoccus_phage	7.8e-05	22.4
WP_014424954.1\|1885937_1886246_-	hypothetical protein	NA	NA	NA	NA
WP_014424955.1\|1886319_1886916_-\|tail	putative phage major tail protein	A0A1J0MFV0	Staphylococcus_phage	1.2e-11	35.7
WP_041914358.1\|1886912_1887284_-	hypothetical protein	NA	NA	NA	NA
WP_041914359.1\|1887264_1887660_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_014424956.1\|1887659_1887974_-\|head	phage head closure protein	K7PH08	Enterobacteria_phage	9.9e-13	36.7
WP_014424957.1\|1887977_1888250_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_014424958.1\|1888253_1889585_-\|capsid	phage major capsid protein	H7BUQ0	unidentified_phage	4.9e-61	43.4
WP_014424959.1\|1889602_1890238_-\|head,protease	HK97 family phage prohead protease	I2E8Y9	Clostridium_phage	2.5e-15	35.4
WP_041914360.1\|1890224_1891487_-\|portal	phage portal protein	NA	NA	NA	NA
WP_102013423.1\|1891491_1893240_-\|terminase	terminase	J9QEC9	Clostridium_phage	9.9e-86	34.7

DBSCAN-SWA_9

1902611 : 1915507

Streptococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014424977.1\|1902611_1903715_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	8.1e-102	49.9
WP_014424978.1\|1903918_1904245_-	hypothetical protein	NA	NA	NA	NA
WP_014424979.1\|1904257_1904821_-	hypothetical protein	NA	NA	NA	NA
WP_041914367.1\|1904817_1905225_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014424980.1\|1905330_1905759_-	hypothetical protein	NA	NA	NA	NA
WP_014424981.1\|1905773_1906262_-	hypothetical protein	S4TZY4	uncultured_phage	3.7e-22	48.1
WP_014424982.1\|1906270_1907608_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	3.6e-72	41.4
WP_014424983.1\|1907601_1908492_-	phage replisome organizer N-terminal domain-containing protein	A0A2H4J2I9	uncultured_Caudovirales_phage	1.1e-29	52.9
WP_014424984.1\|1908508_1908991_-	hypothetical protein	NA	NA	NA	NA
WP_014424985.1\|1908990_1909680_-	hypothetical protein	A0A2H4J2T4	uncultured_Caudovirales_phage	1.2e-23	33.5
WP_014424986.1\|1909679_1910249_-	hypothetical protein	NA	NA	NA	NA
WP_014424987.1\|1910270_1910924_-	ATP-binding protein	A0A2I7R7K9	Vibrio_phage	3.5e-28	36.7
WP_014424988.1\|1910940_1911471_-	host-nuclease inhibitor Gam family protein	A0A0H3U480	Staphylococcus_phage	1.8e-11	27.7
WP_050992806.1\|1911669_1911945_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_014424991.1\|1912003_1912168_-	hypothetical protein	NA	NA	NA	NA
WP_014424992.1\|1912164_1912494_-	hypothetical protein	NA	NA	NA	NA
WP_158645800.1\|1912512_1912665_-	hypothetical protein	NA	NA	NA	NA
WP_041914368.1\|1912676_1912901_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_102013424.1\|1913123_1913660_+	helix-turn-helix transcriptional regulator	A0A0A8WE28	Clostridium_phage	4.3e-08	31.4
WP_014424994.1\|1913986_1915507_+	recombinase family protein	A0A0A7RTP8	Clostridium_phage	2.8e-68	33.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_017074

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14775 : 31988

Clostridium_phage(58.33%)

tail,portal,protease,plate,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014426213.1\|14775_16053_+\|portal	phage portal protein	J9QE83	Clostridium_phage	7.8e-40	29.5
WP_014426214.1\|16045_16618_+\|head,protease	HK97 family phage prohead protease	Q9AZE1	Lactococcus_phage	2.2e-18	36.8
WP_014426215.1\|16671_17844_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_014426216.1\|17933_18230_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_014426217.1\|18226_18610_+\|head	phage head closure protein	A0A2I7SC03	Paenibacillus_phage	1.5e-07	26.4
WP_014426218.1\|18606_19047_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_014426219.1\|19047_19482_+	hypothetical protein	NA	NA	NA	NA
WP_014426220.1\|19498_20674_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S0D2	Clostridium_phage	9.3e-64	35.1
WP_102013538.1\|20838_21264_+\|tail	phage tail tube protein	A0A0A7RVT1	Clostridium_phage	4.4e-24	40.0
WP_014426222.1\|21345_21762_+	phage related protein	A0A090EUD0	Clostridium_phage	1.7e-07	26.6
WP_014426224.1\|21941_24797_+\|tail	phage tail tape measure protein	A6M961	Geobacillus_virus	1.5e-35	31.8
WP_014426225.1\|24830_25595_+	hypothetical protein	A0A0A7RTT3	Clostridium_phage	2.9e-18	36.0
WP_014426226.1\|25601_27026_+	phage related protein	NA	NA	NA	NA
WP_014426227.1\|27097_27520_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_014426228.1\|27519_27978_+	DUF2634 domain-containing protein	J9QE34	Clostridium_phage	7.9e-19	38.5
WP_014426229.1\|27979_29044_+\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	5.5e-47	34.4
WP_014426230.1\|29040_29637_+	DUF2313 domain-containing protein	A0A2H4J717	uncultured_Caudovirales_phage	2.9e-13	33.3
WP_014426231.1\|29636_31988_+	hypothetical protein	Q9AZ87	Lactobacillus_prophage	8.0e-06	41.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_017069

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 42600

Clostridioides_phage(14.29%)

terminase,portal,tail,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158645834.1\|0_588_-\|integrase	tyrosine-type recombinase/integrase	A0A2R2ZHE2	Clostridioides_phage	1.4e-07	27.2
WP_014425954.1\|1152_1659_-	hypothetical protein	NA	NA	NA	NA
WP_014425955.1\|1660_2017_-	hypothetical protein	A0A0F6WCW0	Sinorhizobium_phage	3.1e-15	44.9
WP_014425956.1\|2110_2362_-	hypothetical protein	NA	NA	NA	NA
WP_014425957.1\|2377_3013_-	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_014425958.1\|3014_3191_-	hypothetical protein	NA	NA	NA	NA
WP_014425959.1\|3210_3549_-	hypothetical protein	NA	NA	NA	NA
WP_014425960.1\|3560_3836_-	hypothetical protein	NA	NA	NA	NA
WP_014425961.1\|3849_4305_-	hypothetical protein	A0A1B2LRS6	Wolbachia_phage	4.3e-09	31.9
WP_014425962.1\|4533_4776_-	hypothetical protein	NA	NA	NA	NA
WP_014425963.1\|4778_5054_-	hypothetical protein	NA	NA	NA	NA
WP_014425964.1\|5147_5639_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_014425965.1\|5727_5913_-	hypothetical protein	NA	NA	NA	NA
WP_014425966.1\|5909_6839_-	hypothetical protein	NA	NA	NA	NA
WP_014425968.1\|7007_7256_-	hypothetical protein	NA	NA	NA	NA
WP_014425969.1\|7255_7423_-	hypothetical protein	NA	NA	NA	NA
WP_014425971.1\|10112_10427_+	hypothetical protein	NA	NA	NA	NA
WP_014425974.1\|10990_11272_+	hypothetical protein	NA	NA	NA	NA
WP_014425975.1\|11565_12111_+	hypothetical protein	NA	NA	NA	NA
WP_014425976.1\|12119_13748_+\|terminase	phage terminase large subunit	A0A2K9VGU9	Faecalibacterium_phage	5.6e-83	37.2
WP_014425977.1\|13738_15058_+\|portal	phage portal protein	A0A0S2SXX8	Bacillus_phage	5.6e-09	22.7
WP_041914893.1\|15032_16016_+	hypothetical protein	NA	NA	NA	NA
WP_014425979.1\|16373_17375_+	hypothetical protein	NA	NA	NA	NA
WP_014425980.1\|17444_17612_+	hypothetical protein	NA	NA	NA	NA
WP_014425981.1\|17608_18184_+	hypothetical protein	NA	NA	NA	NA
WP_158645835.1\|18176_18740_+	hypothetical protein	NA	NA	NA	NA
WP_041914894.1\|18772_19321_+	hypothetical protein	NA	NA	NA	NA
WP_014425984.1\|19310_19712_+	hypothetical protein	NA	NA	NA	NA
WP_014425985.1\|19795_20575_+	hypothetical protein	NA	NA	NA	NA
WP_014425986.1\|20664_21030_+	hypothetical protein	NA	NA	NA	NA
WP_014425987.1\|21095_21242_+	hypothetical protein	NA	NA	NA	NA
WP_014425988.1\|21242_21881_-	hypothetical protein	NA	NA	NA	NA
WP_014425989.1\|21959_29432_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_014425990.1\|29431_30133_+	hypothetical protein	NA	NA	NA	NA
WP_014425991.1\|30233_30650_+	hypothetical protein	NA	NA	NA	NA
WP_102013508.1\|30664_31435_+	DUF2163 domain-containing protein	H9EB46	Vibrio_phage	8.9e-07	21.7
WP_014425993.1\|31446_36225_+\|tail	putative phage tail protein	J9Q713	Salmonella_phage	3.4e-19	22.3
WP_014425994.1\|36224_36563_+	hypothetical protein	NA	NA	NA	NA
WP_014425995.1\|36563_37379_+	hypothetical protein	NA	NA	NA	NA
WP_014425996.1\|37515_42600_+\|tail	putative phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017073

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017068

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_017074

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_017069

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection