CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017044	Rickettsia parkeri str. Portsmouth, complete genome	1 crisprs	PD-DExK,cas3,DEDDh	3	1	0	0

Cas Category Instructions

Results visualization

1. NC_017044

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CRISPR-Cas detection and classification

Crispr_ID: NC_017044_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017044_1

887821-887970

Orphan

Consensus_repeat	Method
GGAGGTGGAGGTGGTGATGGA	CRT

3 spacers

The CRISPR arrays of NC_017044_1

>merge|NC_017044|1|887821-887970|CRT
GGAGGTGGAGGTGGTGATGGAGTGTTATTTTCCGGTAAAGGAGGTGGAGGTGGAGGTGGAGGTGGTGATGGAGTGTTATTTTCCGGTAAAGGAGGTGGAGGTGGTGATGGAGTGTTATTTTCCGGTAAAGGAGGTGGAGGTGGTGATGGA

>NC_017044|1|1|887821-887970|CRT
GGAGGTGGAGGTGGTGATGGA	GTGTTATTTTCCGGTAAA
GGAGGTGGAGGTGGAGGTGGA	GGTGGTGATGGAGTGTTATTTTCCGGTAAA
GGAGGTGGAGGTGGTGATGGA	GTGTTATTTTCCGGTAAA
GGAGGTGGAGGTGGTGATGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017044.1\|WP_014410889.1\|877881_878403_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NC_017044.1\|WP_004998004.1\|881087_881690_+\|hypothetical-protein	unknown	unknown	unknown
NC_017044.1\|WP_041472294.1\|900454_900871_-\|hypothetical-protein	unknown	unknown	unknown
NC_017044.1\|WP_014410894.1\|886098_886734_+\|3-oxoacid-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NC_017044.1\|WP_004998018.1\|876650_877268_+\|SCO-family-protein	unknown	unknown	gnl\|CDD\|224910
NC_017044.1\|WP_004997961.1\|897300_897672_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238780
NC_017044.1\|WP_014410891.1\|880261_881014_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368639
NC_017044.1\|WP_010977519.1\|901322_901649_-\|hypothetical-protein	unknown	unknown	unknown
NC_017044.1\|WP_014410900.1\|897672_899064_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NC_017044.1\|WP_014410897.1\|890351_891701_-\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NC_017044.1\|WP_004998015.1\|877369_877756_+\|cytochrome-c-maturation-protein-CcmE	unknown	unknown	gnl\|CDD\|237317
NC_017044.1\|WP_004997963.1\|896875_897139_-\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|225489
NC_017044.1\|WP_014410896.1\|889071_890157_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_017044.1\|WP_014410893.1\|885453_886095_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NC_017044.1\|WP_032850710.1\|899846_900068_-\|hypothetical-protein	unknown	unknown	unknown
NC_017044.1\|WP_014410890.1\|878613_880281_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NC_017044.1\|WP_014410899.1\|893495_896864_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NC_017044.1\|WP_014410888.1\|874849_876406_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NC_017044.1\|WP_014410892.1\|881897_884039_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|224121
NC_017044.1\|WP_014410898.1\|891909_893349_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660

Protein	Function_ID	Function_description	E-value
NC_017044.1\|WP_014410889.1\|877881_878403_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.14915e-114
NC_017044.1\|WP_014410898.1\|891909_893349_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_017044.1\|WP_014410890.1\|878613_880281_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	1.65623e-160
NC_017044.1\|WP_004998018.1\|876650_877268_+\|SCO-family-protein	gnl\|CDD\|224910	COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only].	4.75712e-73
NC_017044.1\|WP_004997961.1\|897300_897672_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238780	cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.	1.19719e-52
NC_017044.1\|WP_014410891.1\|880261_881014_+\|hypothetical-protein	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	4.55083e-07
NC_017044.1\|WP_014410900.1\|897672_899064_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017044.1\|WP_014410897.1\|890351_891701_-\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	3.14267e-168
NC_017044.1\|WP_004998015.1\|877369_877756_+\|cytochrome-c-maturation-protein-CcmE	gnl\|CDD\|237317	PRK13254, PRK13254, cytochrome c maturation protein CcmE.	2.92225e-64
NC_017044.1\|WP_004997963.1\|896875_897139_-\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	2.08277e-32
NC_017044.1\|WP_014410896.1\|889071_890157_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NC_017044.1\|WP_014410893.1\|885453_886095_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	5.04453e-107
NC_017044.1\|WP_014410894.1\|886098_886734_+\|3-oxoacid-CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	5.68454e-118
NC_017044.1\|WP_014410899.1\|893495_896864_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_017044.1\|WP_014410888.1\|874849_876406_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NC_017044.1\|WP_014410892.1\|881897_884039_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|224121	COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription].	0

>NC_017044.1|WP_014410894.1|886098_886734_+|3-oxoacid-CoA-transferase-subunit-B
MPWSKEEIYQITAEELKDGLYVNLGIGMLTHVANYIPQGVNVIFQSENGMLGMGPFPYAGEEDPDLINAGKQTITAIPESSYFDSSFSFGMIRGSHVDLTILCAMQVSQTGDLANWTIPGKMVKGMGGAMDLVANTKRVVIIMEHNAKDGGAKLLKECNFPLTGKKVVNRVITDLGIFDIDKDEMILVRQADDVTIEEIKSKTEAEFIVNL
>NC_017044.1|WP_014410893.1|885453_886095_+|CoA-transferase-subunit-A
MTIMSGGFGLCDIPENLINALLKSNVQNLTVISNNCGVDNFGLGLLIQTKQIKKMISSYVGENKIFEQQYLDKVLELELNPQGTLAERIRAACMGIPAFYTKTGIGTIVEEGKETKEFNGKKYIMETALQADLAIIKGFKADKSGNVIYNKTARNFNAVMAGAAKVTVCEVEEIVKVGELDPNNIHTPNIFIQRLIVGKKYEKRIEQLTVREK
>NC_017044.1|WP_014410892.1|881897_884039_-|ATP-dependent-DNA-helicase-RecG
MLTILEKFLFSSVKTFINIREDTVSALKRLGINNIRDLLFYLPVSYQNKILSPNLTEVRDGDIIQTEIVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFIVNPKLAKEIEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGFRNDDLYTNAKKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQVNILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMSVNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYPGYTGIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVKQSGEIAFFFADLADDYDLLLKAHKFAAIGSKGNVNFVNFQIKLFAKSQVSELV
>NC_017044.1|WP_004998004.1|881087_881690_+|hypothetical-protein
MNIIDRLILDNEQYKEQFKKNKLFKIKLDSTLRKNKFLKHFRIWSYEFQKMVLARVVFSETKEFQQLAWEHLTDEFGHNIELFQNLENNEETTDSIFEALGSWFTLKMMTLGDSERAVLVHLVIESCATIFYAKLGSIFFNHKAAKHFKTHMYLDPEHEQMGIDLLKQININDSSLLTIQKKGWDMIDALFTRLAEITQD
>NC_017044.1|WP_014410891.1|880261_881014_+|hypothetical-protein
MIITTNKHQSNYQDWLKALAIITMIIDHVGLYLYPELTIMRIIGRTTMPVFCFFAGYNFHDKPKTHIIIFGVLLQIYTTVLFKQFLTTNILISIYLGQWYIYYFRNSLTRFFYSGYCHAIIMVLLWYISWTLIDYGTFVIATMILGFISKHEQANLKLCCFIAIFASFVHSTLFTLAISFNEFNFSNTDLILNLTFLTITYILMILSDYSQKIAINLKWISRNVLYIYCIHIMILQFIFIYKYTYGFKNW
>NC_017044.1|WP_014410890.1|878613_880281_+|murein-biosynthesis-integral-membrane-protein-MurJ
MTDFLHNVANKEEFEGNTERSTAAYTLVRENASTGLAHKLPLEASYARSRLFRSGVVVAFFTLISRIFGLVREQFIASLFGSTPMGDSINVAFKLPNLFRRIFAEGALSSVFIPIYNEKMLISKKAANNFSGEIFTLLLLTLIVIIALMQIFMPQLMLFIVPGFHGKKEKFELTVFLCRITIPYLIFVSLTALLGGILNSIKKFAAFAFSPVILSICVIIFTLTFDHYIESIISISLSLIMAGILQVSFMFVCVKRADLNFPIIFNPSDPDVKKLLINMGPATISSGIQQLNLFISQSIASFIEGAISILSYADRIYQFPLSIIGTSFSTILLPELSKIYKSNDIVAAKKIQNNAIRMGLLLSLPATFGIIILSHPIINIIYERGVFTSQDTTNTAEAISAFALGLPAFILAKILTPIFYANGDTKTPLKITLFSIIINTGMNLLLMDSLKHIGIAVGTSIAAWYNLGLLYSYTTKQNKLHIEAGIKLFCGKILLCCILMSIIIALIKHYYLEYFYSEYLLIKVCMLGSTIAVGMGAFFGTAYLLKTVNYDNNNK
>NC_017044.1|WP_014410889.1|877881_878403_+|inorganic-diphosphatase
MFIDKIKAKANNYEINVIIEIPMNSGPIKYEFDKESGAIFVDRFMQTTMSYPCNYGFIPHTLSNDGDPIDVLVVAHHPVVPGSVIKCRAVGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCDMLKQRIVHFFEHYKDLEKGKWVKVTGWENKSKADALINEGIDRVS
>NC_017044.1|WP_004998015.1|877369_877756_+|cytochrome-c-maturation-protein-CcmE
MQKRVRNRLITIIICFCSACLGISIILYNLEKNIVFFLPPSKINEIEQGKELRVGGLVKTDSINKIADDKISFVITDNIKDFEILYQGALPALFRKGQGIIAIGQLSNGKFIARQLLAKHDENYRPPQ
>NC_017044.1|WP_004998018.1|876650_877268_+|SCO-family-protein
MKIQSNVIKIIIVISLLIGVGALYLLLSLRTPEKPLAGQVNIYEDNVKIGGDFELIDQNGEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHKIDILPVFITIDPKRDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDDDPNYMLDHSSFTYLIDANGKYLKHFYLDSSPKEMMEFLRNE
>NC_017044.1|WP_014410888.1|874849_876406_+|protein-translocase-subunit-SecD
MQKLPKWKIFLSIICTVFAVICALPNFMQVNSKFLPHDSVNLGLDLRGGAHLLLDVDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPKQLKPLKKIINKIDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGDNASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKLGLV
>NC_017044.1|WP_014410896.1|889071_890157_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYNLLLPHIHNSHIANLFHYITFRSGLAIIITLSLSFITGPILIEFLRSLQKNGQPIRSDGPESHQTKVGTPTMGGIMIILSSCLSTLLLADLTNKYIWITLFGFISFGIIGFMDDYAKVTKDNHYGVRGKSKLLLQGIISFIICVLLEYLDKSPSYLLNVPFFKNLSLDLGYCYIVFAIFVIVGSSNAVNLTDGLDGLATVPIAFTAGSFALISYLVGNLIYSNYLQLTYIPNTGELTVLCAGLVGSCLGFLWFNAQPAEVFMGDTGSLSLGGVLGIISVITKHEIVLAIVGGLFVIETASVILQVYYFKATKGKRIFKMAPLHHHFEKHGWPESKVVIRFWIISVIFALIGLSSLKLR
>NC_017044.1|WP_014410897.1|890351_891701_-|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MIWNSKTLSAVLGITISNSISCNEVQFNSKDVKKGNLFIALQGNRDGHDYVLDAIDKGAAAVIISKRVEINDKDKIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILTNLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKDIEIAANHLANISPTKGRGEIINIQNCRVICDYYNASPQSMKAALEYLKQVPAENKTAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDYYK
>NC_017044.1|WP_014410898.1|891909_893349_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MSHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVIDKVIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIKFITVGTKGDLEITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNIKLRDSKLSVIFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGDKKLPFDDAEVVRKCVKVCHPVA
>NC_017044.1|WP_014410899.1|893495_896864_-|transcription-repair-coupling-factor
MLQQKFPAAAKSFFTIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKVLITHTVNLLNKLPPKDFFSKYFLKLSPKMKFTMDELVMFLVDNSFTRNASSIDVGEFAVRGEIIDIILSGPKAYRIHFSWGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNVLYEAVISGRKFTGYEQLLPLFYDSCSNLIDYLNDPIFIFDHLSKQAILEFEHSYNDFYSARSEANKLKFNSFYPTLSPTSLYFTASEITALLEQKNNILLTFENSEQASLIKNIAATSFIEKKTVSDKLFEVIKANSHKKIIIGSSVLSSFERIKSIIQNYEYKYNEINKLDEAKASIINVAIIPLNQSFYTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEVLEIKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVSWQRSKAKLKKRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMPYDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQSGQIKEVGTELYQEMLEEQIAIFKDEPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSNEIEVETFKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKIIKFVSTYSNQAKIKPDNKLVYIKKLVDKNIIVEANQLLWNLSEV
>NC_017044.1|WP_004997963.1|896875_897139_-|succinate-dehydrogenase-assembly-factor-2
MNKLNKNSLQKKLFYRSKNRGCREMDYILGSFAEKYLSLMDETKLGSYSLILDQNDNDLYNWINNKSSAPSYLDAEIIDKLHKIAKI
>NC_017044.1|WP_004997961.1|897300_897672_+|rhodanese-like-domain-containing-protein
MSVQNICSTKAYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKIHAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPWQF
>NC_017044.1|WP_014410900.1|897672_899064_+|chromosomal-replication-initiator-protein-DnaA
MSTNQIILTDQGNNYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKELPGTTQTVTELPTKTFADIGSSELNSENIFSTLDVRFTFDNFVVGAPNELAYAAARAVAESSGAVSESNPLFLYGGVGLGKTHLMHAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKQVISFKEKFRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELRLGILESKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLENTQNILRDLLRSNERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKALTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQN
>NC_017044.1|WP_032850710.1|899846_900068_-|hypothetical-protein
MLRMYYKILPPKFNQTISPTSFQKRLKLSLSKRKDIYDANDDDNNQTLETTDIDNSMKEYFKLIGEHTNTIYD
>NC_017044.1|WP_041472294.1|900454_900871_-|hypothetical-protein
MHAKASTQNIEELPRKLNYFAEKLTHLLFMLATHRNNATLFTVPMFLELIDKNSIFLSYKEFFPMSAEHAVAQTRGILKNYKYVLPNSCPIDYDTTNVQNGNLLLIKEGSILIEWLSKKLNNYKLANIARIFDILASM
>NC_017044.1|WP_010977519.1|901322_901649_-|hypothetical-protein
MLKYKNFDSSSDEELKENYTLPKYLNFLLKNILDINYIYNSEDFKLKLGLVLHNLADRFFKYSTIRNIYKKIKSEILVVDNNYYEENFNIIKTAFNKHNYLKIITKKI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NC_017044_1	1.1\|887842\|18\|NC_017044\|CRT	887842-887859	18	NC_017044.1	887971-887988	1.0
NC_017044_1	1.2\|887881\|30\|NC_017044\|CRT	887881-887910	30	NC_017044.1	887959-887988	1.0
NC_017044_1	1.3\|887932\|18\|NC_017044\|CRT	887932-887949	18	NC_017044.1	887971-887988	1.0

1. spacer 1.1|887842|18|NC_017044|CRT matches to position: 887971-887988, mismatch: 0, identity: 1.0

gtgttattttccggtaaa	CRISPR spacer
gtgttattttccggtaaa	Protospacer
******************

2. spacer 1.2|887881|30|NC_017044|CRT matches to position: 887959-887988, mismatch: 0, identity: 1.0

ggtggtgatggagtgttattttccggtaaa	CRISPR spacer
ggtggtgatggagtgttattttccggtaaa	Protospacer
******************************

3. spacer 1.3|887932|18|NC_017044|CRT matches to position: 887971-887988, mismatch: 0, identity: 1.0

gtgttattttccggtaaa	CRISPR spacer
gtgttattttccggtaaa	Protospacer
******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017044_1	1.2\|887881\|30\|NC_017044\|CRT	887881-887910	30	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	285236-285265	7	0.767

1. spacer 1.2|887881|30|NC_017044|CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.767

ggtggtgatggagtgttattttccggtaaa	CRISPR spacer
tggaaagatggagtgatattttccagtaaa	Protospacer
 * .. ********* ********.*****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage