CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017193	Arcobacter sp. L plasmid pABL, complete sequence	0 crisprs	NA	0	0	0	0
NC_017192	Arcobacter sp. L, complete genome	3 crisprs	cas6,csa3,PrimPol,DEDDh,csx1,PD-DExK,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,casR	0	4	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017192_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017192_1

1549852-1549946

Orphan

Consensus_repeat	Method
TATTTGATTCTTCTTTTACTTCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017192_1

>merge|NC_017192|1|1549852-1549946|CRISPRCasFinder
TATTTGATTCTTCTTTTACTTCTTCTTTTTGTAATACATTTTCAAAAGAGTTAGGGTTTGTATTTAAAATATTTGGTTCTTCTTTTACTTCTTCC

>NC_017192|1|1|1549852-1549946|CRISPRCasFinder
TATTTGATTCTTCTTTTACTTCTTC	TTTTTGTAATACATTTTCAAAAGAGTTAGGGTTTGTATTTAAAA
TATTTGGTTCTTCTTTTACTTCTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017192.1\|WP_014474245.1\|1556588_1557218_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236274
NC_017192.1\|WP_014474243.1\|1554820_1556032_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_017192.1\|WP_014474236.1\|1549141_1549498_+\|CbiX/SirB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|239509
NC_017192.1\|WP_014474233.1\|1546256_1547330_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_017192.1\|WP_014474246.1\|1557229_1558369_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NC_017192.1\|WP_041654776.1\|1553182_1554250_-\|coproporphyrinogen-III-oxidase-family-protein	unknown	unknown	gnl\|CDD\|181428
NC_017192.1\|WP_014474242.1\|1554305_1554803_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NC_017192.1\|WP_014474230.1\|1542605_1544708_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NC_017192.1\|WP_041654777.1\|1559302_1561579_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_017192.1\|WP_014474234.1\|1547340_1547928_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_017192.1\|WP_014474235.1\|1548035_1549088_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|376070
NC_017192.1\|WP_014474228.1\|1539881_1542056_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_017192.1\|WP_014474232.1\|1545555_1546233_+\|chemotaxis-protein-CheD	unknown	unknown	gnl\|CDD\|319352
NC_017192.1\|WP_014474237.1\|1549498_1549777_-\|hypothetical-protein	unknown	unknown	unknown
NC_017192.1\|WP_014474240.1\|1552301_1553129_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_017192.1\|WP_014474239.1\|1550319_1552287_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NC_017192.1\|WP_014474247.1\|1558382_1559213_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|181452
NC_017192.1\|WP_014474231.1\|1544713_1545559_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_017192.1\|WP_014474229.1\|1542223_1542592_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NC_017192.1\|WP_014474244.1\|1556034_1556586_+\|HobA-domain-containing-protein	unknown	unknown	gnl\|CDD\|338263

Protein	Function_ID	Function_description	E-value
NC_017192.1\|WP_014474245.1\|1556588_1557218_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236274	PRK08485, PRK08485, DNA polymerase III subunit delta'; Validated.	3.67872e-49
NC_017192.1\|WP_014474247.1\|1558382_1559213_-\|prephenate-dehydrogenase	gnl\|CDD\|181452	PRK08507, PRK08507, prephenate dehydrogenase; Validated.	1.65357e-168
NC_017192.1\|WP_014474236.1\|1549141_1549498_+\|CbiX/SirB-N-terminal-domain-containing-protein	gnl\|CDD\|239509	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.	4.69371e-29
NC_017192.1\|WP_014474240.1\|1552301_1553129_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.97839e-87
NC_017192.1\|WP_014474246.1\|1557229_1558369_+\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.8402e-102
NC_017192.1\|WP_041654776.1\|1553182_1554250_-\|coproporphyrinogen-III-oxidase-family-protein	gnl\|CDD\|181428	PRK08446, PRK08446, coproporphyrinogen III oxidase family protein.	0
NC_017192.1\|WP_014474243.1\|1554820_1556032_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_017192.1\|WP_014474233.1\|1546256_1547330_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	3.1116e-132
NC_017192.1\|WP_041654777.1\|1559302_1561579_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_017192.1\|WP_014474234.1\|1547340_1547928_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.65455e-07
NC_017192.1\|WP_014474235.1\|1548035_1549088_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|376070	pfam18644, Phage_int_SAM_6, Phage integrase SAM-like domain. Xer recombinases are members of the tyrosine site-specific recombinase superfamily, a large group of enzymes that catalyze DNA breakage and rejoining using a conserved tyrosine nucleophile. Tyrosine recombinases promote various programmed DNA rearrangements including the monomerization of phage, plasmid and chromosome multimers, resolution of hairpin telomeres, and the movement of virulence and antibiotic resistance carrying integrative mobile genetic elements. Structural analysis of Helicobacter pylori XerH indicates that this N-terminal domain consisting of six alpha-helices contacts the DNA using a four-helix bundle.	8.54215e-72
NC_017192.1\|WP_014474228.1\|1539881_1542056_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_017192.1\|WP_014474232.1\|1545555_1546233_+\|chemotaxis-protein-CheD	gnl\|CDD\|319352	cd16352, CheD, chemotaxis protein CheD stimulates methylation of methyl-accepting chemotaxis proteins. This family contains bacterial chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs). The CheD chemotaxis gene is not found in the Escherichia coli genome, but is present in many other organisms, including B. subtilis, where CheD appears to have two separate roles; it binds to chemoreceptors to activate them as part of the CheC/CheD/CheYp adaptation system, and it deamidates selected residues to activate chemoreceptors, enabling them to mediate amino acid chemotaxis. CheD has been shown to catalyze amide hydrolysis of specific glutaminyl side chains of the B. subtilis chemoreceptors McpA, McpB and McpC; deamination by CheD is required for the chemoreceptors to effectively transduce signals to the CheA kinase. CheD's ability to bind the receptors is controlled by CheC via a competitive binding mechanism; substituting Gln into the receptor motif of the signal-terminating phosphatase, CheC, turns the inhibitor into a receptor-modifying deamidase CheD substrate. Also, CheYp increases the affinity of CheD for CheC, controlling CheD binding to the receptors through its interactions with CheC. Thus, high levels of CheYp means CheC is a better binding target for CheD than the receptors, resulting in decreased CheA activity. The CheD structure reveals a distant homology with a class of bacterial toxins represented by the cytotoxic necrotizing factor 1 (CNF1) as well as a class of proteins of unknown function represented by B. subtilis YfiH. An invariant Cys-His pair forming a catalytic dyad is observed, and is required by the toxins for deamidation activity.	2.12887e-47
NC_017192.1\|WP_014474230.1\|1542605_1544708_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NC_017192.1\|WP_014474242.1\|1554305_1554803_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	6.55987e-71
NC_017192.1\|WP_014474239.1\|1550319_1552287_-\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NC_017192.1\|WP_014474231.1\|1544713_1545559_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.56379e-64
NC_017192.1\|WP_014474229.1\|1542223_1542592_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.65051e-59
NC_017192.1\|WP_014474244.1\|1556034_1556586_+\|HobA-domain-containing-protein	gnl\|CDD\|338263	pfam12163, HobA, DNA replication regulator. This family of proteins is found exclusively in epsilon-proteobacteria. Proteins in this family are approximately 180 amino acids in length. The structure of HobA is a modified Rossmann fold consisting of a five-stranded parallel beta-sheet (beta1-5) flanked on one side by alpha-2, alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on the other. The alpha-1 helix is extended away from and has minimal interaction with the globular part of the protein. Four monomers interact to form a tetrameric molecule. Four calcium atoms bind to the tetramer and these binding sites may have functional relevance. The function of HobA is to regulate DNA replication and its does this by binding to DNA-A, but the exact mechanism of how this regulation occurs is purely speculative.	1.68301e-91

>NC_017192.1|WP_014474237.1|1549498_1549777_-|hypothetical-protein
MIISVDKDSLFNLFGVNNFYSLETTIDNMAPSLVEYHLSNFYNYNNDNVYFNKRDVEESVSIGEYNIYIDYDKNIYLEVTESNLDDNTQTLW
>NC_017192.1|WP_014474236.1|1549141_1549498_+|CbiX/SirB-N-terminal-domain-containing-protein
MEALIIVAHGSKMKSSNDEIVTIVEKIKESNENTNLHVFHAFLESTDPSLFISINNAISKKCKKIKIFPYFLAAGKHVTEDIPCEIKKFKKQYPELEFILLPHIGLCNGIENMIISNS
>NC_017192.1|WP_014474235.1|1548035_1549088_+|tyrosine-type-recombinase/integrase
MRYDLDFKNSFNDTFLFWIERFVRNKLTTLSNRQVTDKEKLASIIQQLVKGTKSIDELATIVKEARNIGLAGVNTYFNPLFKLYNFIITLGLASMREIDEELLSDFLASETSSLSDASKKNHRIALLSLFSYIDKQNQNEDGSSYLFKIELKNWGGLSGKSGTKLPSFMNKDEIDRFLNAIDTFEFSDNTSYRNRLILKIIIYTGIRVSEILNLKIKDMFKEDNVYLLQIRGKGNKPRVVMIKSSIIETDLKNWLDMRVCNSDLLVCNQKGDRLTQAYISRIVENILISAGIRKEKNGAHMLRHSFATLLYAKHHDLILVQEALGHADINTSRIYTHFDKERLRKTTEIF
>NC_017192.1|WP_014474234.1|1547340_1547928_+|flavodoxin-family-protein
MFINIIDCTEKSDKNIEDIISFLINYFDSLNIKNERIRFKDFKIVTCTQCRCCTLIKSDNPTKCVIKDDMNDLLDKIEEATAFVIVADRNDLFNRNKLFEKVESRLIAYHYWPYGQAHSTPRKTILDKTSILINYNTTKYFMNHSFYMARMYMEEASVSIGAKVLDWQVIIPTNDLIKDYAKRLKEMADKLVNNS
>NC_017192.1|WP_014474233.1|1546256_1547330_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MYTVLVIDDSPSMRRIIKDMINSIEEFEVIGVATDAYDAREKIKEYEPDLVTIDINMPKMDGVTFLRNLMRLHPMPAVVISGESVRGNDIFDDGAVGFIPKPDTGESMISFQHRIKDTLLNLTFLLKRYTLKKPPALKKNYKPTINVEYKVHPDEVIPLRASTFPGMKLIAIGSSTGGVESLLKVFKRLPGDLPPILITQHIPYGFSNSFAQRLNDNSEVNVCEAKDGMILERGHGYLAPGNMHLTIEKYANEYRTKLLDTKKVSQHKPSVDVLFRSVNNAVGGAAMAVMMTGMGDDGTIAMKELHDNGAYTVAQNEESCVVFGMPMKAIQAGAVKDIVHLDEIADYIIDFSKGKKR
>NC_017192.1|WP_014474232.1|1545555_1546233_+|chemotaxis-protein-CheD
MIVIGHKDGSIEKTSAVRYTQKTKGYLTHTVIGGEFAVGSDTDQIAFKTLLGSCVAIMFYDKNTKIKGMNHFLLPKTNNTNDDMKYGLYSVEAMLNEMYKLGCSKGNMVAKISGGADIMQINMSNQSIGFRNVEFAKDFCKSEGFKLISEHTRGEHGRLILLANDFETFIKVTQKSETDSKILSEEKYLQQEITKAPVIKEYVGGVDLFGIDTKEVEPQMEIELF
>NC_017192.1|WP_014474231.1|1544713_1545559_+|protein-glutamate-O-methyltransferase-CheR
MAYTTQDVHNKVKKLLYSLTGITLSENKDIMISNRIDKLKRNCRYSGDIMDLLNSIEEGNNVTEFINSFTTNKTHFFREDFHFVDLKDRILPNFATSGNKINMYCSASSTGEEPYSMAMTVFKAMEDLGKHINASIIATDIDTSVLQYAANGIYRYSKSSKEFPSWIKPQKYFKRRVQKNLSGEEILIKVNDELKKMITFHVMNLSSSSYPFSKNQFDVIFCRNVLIYFSAEDQNIILKKLFSHLKIGGTLYLGHSENPQDLVPFVKRVGQNIFVKEKEII
>NC_017192.1|WP_014474230.1|1542605_1544708_+|chemotaxis-protein-CheA
MSFDISKYREMFLEEAEELFESADNVLLEAENNGTLTDEEMGQLFRDVHTLKGSGASVELALFAEFTHDVENLMDKLRNHKIEFIPEMAETLIDGLDVMKEILDLEVADKLDRDTFTEMTSSLLEEIRAYSNGGNVAKKEVEQPVVEKIEKPKEEPIKVKEEVVVDSDNFGFFDDDLNEQRDNKNKPYGIFADDEIDEEHENIGFYDDDLETISKNTKDSDFKISNEDKDNFGFFDEMPELTPSAVMQTNDIEEKVIAESEIEKTKPAQNNTPVVRKQKTASEDNEEATTKKSVSNNNNSIRVNLDKIDLLMNNVGDLVITNAMLTQFSSTIEESKTRNSVLERLELLERHIRDMQDSIMSIRMVPMDSIYSKFPKVVRDISKKLGKKVEFKHYGDNVEIDKAMSEGLTDPLMHIIRNSLDHGIETPSERELTGKPEVGSISISAEQANGQMIITIEDDGKGINSEKVAQKALEQGQIDENQYNSMTENEKALLIFGAGVSTADQITDISGRGVGMDVVKTNIHKLGGAIKLDTHLGEGTTITIMLPLTLAILDGLDIRVGNQKYILPLSSIVESLQPTSDMIKKIGDGTQDLLMLREEFIPVVKLHQLFSLEKSFDKLEDGMLIVVKSGNTKVALSIDEFLNQHQVVVKPLDKNFRSVQGIGAATVRGDGSIGLILDVVGIINAQIKIEKDMNLAKRAS
>NC_017192.1|WP_014474229.1|1542223_1542592_+|response-regulator
MAKLLIVDDSTMLRDMLNYALNEGGYTDVTEAVDGVDGLAKAKAADFDLIITDVNMPNMDGLTLIGELRKISQYSKKPILVLTTERSDEMKAKGKAAGATGWIVKPFVPDQLLKAVNIVLSR
>NC_017192.1|WP_014474228.1|1539881_1542056_+|polyribonucleotide-nucleotidyltransferase
MATVCEFDLNGKQEVFEFEKVAKQANGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQTLSLNAANAALYTSNLPIKKSVCGVRVGKIENELVINPTSEQLENSTLDLYVAGSKDELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEESLVEAISFAQNALKESNLTYEKAFEEVCKEKVEVELIKFTIDESVINYVRDNFSNEIKEAIKKLAKSERATQLKDVAKMISSNEYCSTNELDFTTIYEAVSIVKREIVRNMIVSDKVRADGRGLKDVRPITIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMERFMVHYNFPGFSVGEAKPMFGVGRRELGHGNLAKKALEATIDDDYTETIRLVSEILESNGSSSMATVCGGSLALKAAGVPISDLVAGVAMGMVVEGDNYSVLTDIMGLEDHDGDMDFKVAGTNKGITALQMDIKLGGIELSVLKEALLQAKEGRVHILSLMNEAAKDIVPSEALPLVEQFAIDPSKIMVIIGKAGATIKEIIEKFTVSIDLDRDSGTVKVSGGNKQNVLDACEHIKTISNNAPARKDAPKNVDFEKLYAVDEVVTGKVERVVDFGAFILLPKGGEGLLHISKISKERVNNVSDVLSVGQEIEVKVLKVKKDRIELSSN
>NC_017192.1|WP_014474239.1|1550319_1552287_-|M3-family-metallopeptidase
MFKEFDLSNLENSKELLEKFLDENRKKVDELLKIENKTYKNFVLPFQEIGESINDFLTPIFHIDSVKNSEITTKVYEECIPVISKYETEISQNENIYLSFKDIQSKEKSSLNNIQNKVLENEIRDFKLSGCHLENDKKKRLEEISLRLSELSHKFSQNLLNATKSFEMIIDNFEDVKEIPASDLELAKFEEEGITKYKFTLQMPSYLAYITYGTSREKREEIYKAYCTRAPENGKIIEELLALKDEKVKILGFENYAQYSLATKMASKEEDVVSFLEELGSKAKNKAKEELEEIKALALKDGITDFRSSDMSYYSEKLKKAQYDLDEEYYRPYFEQQSVLNGFFDFLHQMFNIKFTKANTPAWDEKVKVYDLSEDGKTVARIYIDLEARKEKRGGAWMNNWHTYHRNSNGEIKLPTAYIVGNFPQSTEETPSLLRHSDVVTLFHEMGHALHHLLSKIEEPFVSGISGVAWDTVEFPSQFLEYFSYDKDVLKLFAKHYQTGEVLDDAAINRIIKAKNFQSSLATVRQVEFALFDFKLHQKLYKTEEGIQNLLDSVREKFSAMIPPKYNKFQNGFSHIFSGGYSAGYYSYKWAEVLSADAFYMFIDSGNIFNKELGIKYRDTILSQGGSYDMDKLFFNFAQREPSVDSLLKIDGIIS
>NC_017192.1|WP_014474240.1|1552301_1553129_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTIKEIVRKYTNQLKLVTHIPAKEVEILIMHLLEKNTIWLHLNYNQEFLKEKELEILVKKRATNYPLEYIINKASFYGEMFIVKEGVLIPRPETEILVENAVEILKDKKEEIKVLEIGTGSGIISVMLAILIENIKIIAVDINEKALELAKQNAIKHGVKNKIEFRLSNLYENIQEDDIFMTISNPPYIANNYKLPTNVKYEPSNALFGGDIGDELLKDIIKQTNDKKIPYLLCEMGFDQKAPLENYFKEFEVESHSFYKDYESFDRGFTLKFRK
>NC_017192.1|WP_041654776.1|1553182_1554250_-|coproporphyrinogen-III-oxidase-family-protein
MLLYIHIPFCDSKCFYCAFNSYTDKFSLKHEYMKALKKQLKYNLDNYVLKRDKKIETVFIGGGTPSTIKAFEYEEIFSMIKPFLEKNAEITTEANPNSASFEWLQSMKDLGVNRVSFGVQSFENNKLKFLGRSHNSNSAIKAIQNANSIGFKGINCDIIYGVQGDTIETIKSDLDVAFSLPITHLSAYSLTIEEGTKFFDRSSVKIDDEELSYEIFDYISKKGFTQYEISNFAKNKESESKHNYGYWQHKEYLGVGAGAVGYINSQREYPSKSIEEYISNPLFFEVEEIDETDIKTEKILLGFRCSNGVELELFNEKEKEKIDELIQYDKLYIENEKVFNKNFLLADELALYILD
>NC_017192.1|WP_014474242.1|1554305_1554803_+|RNA-pyrophosphohydrolase
MTDKKEMTINHEKKKFRPNVAAIVLSAKYPHKCEIFIASRTDVENAWQFPQGGIDEGESSKEALFRELEEEIGTRDIEIIAEYPTWVSYEFPPAIAKRMYPYDGQRQKYYLVKLKKGAKININTEIPEFSEYKFVPTKNIYEYITFFKRTVYKQVLKYFKNEGYI
>NC_017192.1|WP_014474243.1|1554820_1556032_+|aspartate-kinase
MLKVLKFGGTSVGTLDRIQNVANIIKKIRDEGDDVIAVVSAMSGETNKLLEYAEYYSKTPKLDEIDMLLSSGERVTSALLSIALNEMGYKAMSMSGRQAGIVTDNAHTKARIESIDTTQMKKAIKDGNIIIVAGFQGVAQDTLRVSTLGRGGSDLTAVAIAGAIEADLCEIYTDVDGIYTTDPRIEPKAKKLEKISYDEMLELASLGAKVLQNRSVEMAKKLNVNLVSRSSFTPEVEGTLITKEENIMEKPVVSGIALDKNQIRVGMYGVTDRPGIASAIFTALADANINVDMIVQTRGLDGTTDLDFTIPTTDFEICKKVMERFREQAKNIDYNEAICKVSIVGVGMKSHTGVASKAFTALANENINIRIISTSEIKISMIVDLKYAELAVRALHDAYHLDN
>NC_017192.1|WP_014474244.1|1556034_1556586_+|HobA-domain-containing-protein
MQEFLNWTVNTIREDRLISPWLEEKKYEWTPLVSKNINNLLERGFSIIVVTDKEREWFLEYILANINSTKLNRPFLPYYDFKSFYRYIDAVKSDEDISYIKDMLSISFPNGYCFWYIGKSQDVRAIIPKVSKNSFLWLFDEEKQDAFNLKSSDEALDMKLLQMFRLYNKSVSASLFAEINVEN
>NC_017192.1|WP_014474245.1|1556588_1557218_+|DNA-polymerase-III-subunit-delta'
MIEFIENSSILIVNDIESTLNELLTKYPLHSTRIIKNEEKEEFLIAQATQAIKEAYIASNEKKYIFLCGSTFRKEAQNSLLKILEEPPRNVVFIIITNSKTSLLPTIYSRLPYKYLKKSLIKFESTLNINKLDLRDIYNFLKENQKISKQEAKDIVESILLKVNNQKIKLSQKELEFFSKSIKLLELNSRPINVLTTLLLFLANQKNKN
>NC_017192.1|WP_014474246.1|1557229_1558369_+|dihydropteroate-synthase
MQTYKISISDTKKFYENLGCDKGGIEILSKKSKLHTLYIKDLHVGAANILKQDALSIGADLAVPSGVIVARDKYVDAVLIGTTKHFEVLSRKELAQPFGLKELAKSLKDYVKEQNYKTKIMGVLNANEDSFFKNSRFDNSSASIKIEKMIEDGANIIDIGAVSSRPGSLAVTEDIELERVKDIVQTIYKNKYYEKVDFSIDSFAPKVIDYVLNHGFKIVNDITGLENDEVCKLVAKYNAQAIIMHMQNNQTNMQDNPIYENVILDIDTYLKNQIQKAKSFGINDIVLDVGIGFGKTLEHNLLLLKNLEHFKHFGYELLIGASRKSMINMITPTEVVDRLSGTLAIHLESIRYGASIIRCHDVKEHYQAIKVFEAINNIN
>NC_017192.1|WP_014474247.1|1558382_1559213_-|prephenate-dehydrogenase
MNVGIIGLGLMGGSLAKAVKRYGIAKKVYGFTNSEKNKKDILDLNLVDELVDLETLKKVSDVIILAIPVDAIISMFPNFLDIDENTTIIDMGSTKEYIVKNIPEKIRKNFIAAHPMTGTEKSGPKAAIDDLYEGKTVVFCDLEDNANIHVNKAFRIFQEIGMRIVVMDSSQHDIHACYISHLPHIISFSLANTVMSHEDPKAIIALAAGGFKDMSRIAKSSPRMWSDIFKQNRKNLLAAIETFENQLNEAKKMIEDENYEVLEDWMKKANTLHEIL
>NC_017192.1|WP_041654777.1|1559302_1561579_+|outer-membrane-protein-assembly-factor-BamA
MKIRIVVKNKVVLLSLACATALSANTIKSIEYKDVNKISPQILNETLNMNVGDELDENKLNDAVINFYKQGYFEDIKVINENGNLKLIFKEKPSIASIDIKGYKSRAEDIDTLKTVLRLKKGSMYTEKKVKEAKEKLLSMLESEGYINSVVETEVEKINEQSLKLTFNVNKGDEIIIKKANYHGADKLEQDEFDHVTANKEKEFASWWFGQNDGEVKIDQLKYDARRINDLYYEKGYLDAQVKEPFLDIDFASNQAKLDFFITEGEKYTTNDIKIYLDSSIVDPATIYPELKLIVGNTFNIKKLRQDQDYIKTQVANQGYAFADVRFDLKKNEKEQKVDVVFNVIPGKKVYINDVKISGNNRTLDRVIRRDVYLAPGDLYNLTDFKDSTNKLKRSRFFEDVQIEEKRVSDTKMDIVVKVTEAPTGSLMLGGGYGSYDKFMVNGSISDVNIFGSGLALALSADLSARSNRFELSLKNPAINDSNYNGEVEIHSTESEINRDTYDSTIDTKGFSVALGRELVRNLYAGARYRLDFVSEDYDYSDEFKNNYNPLFGEIYESQDYTSSSITPYLNYDNTDDYYFPREGYRAGISAEYAGVGGDSKYIKPSAYLKYFYSLEDLTELDWVLRLKTQMKILIDNGQINQGDSLYLGGPKTLRGYKSYAFPSNETGYKTEPYKNMWASSAEMSFPLIPSAKMRWGMFYDYGMIGQDTFNDIERSGAGVLLEWISPMGPLQLIFARALDDEPGDDTSSFEFSLGASF

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Crispr_ID: NC_017192_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017192_2

1550107-1550203

Orphan

Consensus_repeat	Method
TATTTGATTCTTCTTTTACTTCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017192_2

>merge|NC_017192|2|1550107-1550203|CRISPRCasFinder
TCTCTAAATCTTCTTTTGCTGCCTCTAGGTCTAGTACTTCATCTTCTAATTCCGTAATTCTACTTTTTAAATTATTATTTTCTTCTTGAAGTTCTTC

>NC_017192|2|2|1550107-1550203|CRISPRCasFinder
TCTCTAAATCTTCTTTTGCTGCCTC	TAGGTCTAGTACTTCATCTTCTAATTCCGTAATTCTACTTTTTAAAT
TATTATTTTCTTCTTGAAGTTCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017192.1\|WP_014474245.1\|1556588_1557218_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236274
NC_017192.1\|WP_014474243.1\|1554820_1556032_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_017192.1\|WP_014474236.1\|1549141_1549498_+\|CbiX/SirB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|239509
NC_017192.1\|WP_014474233.1\|1546256_1547330_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_017192.1\|WP_014474246.1\|1557229_1558369_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NC_017192.1\|WP_041654776.1\|1553182_1554250_-\|coproporphyrinogen-III-oxidase-family-protein	unknown	unknown	gnl\|CDD\|181428
NC_017192.1\|WP_014474242.1\|1554305_1554803_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NC_017192.1\|WP_014474230.1\|1542605_1544708_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NC_017192.1\|WP_041654777.1\|1559302_1561579_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_017192.1\|WP_014474234.1\|1547340_1547928_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_017192.1\|WP_014474235.1\|1548035_1549088_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|376070
NC_017192.1\|WP_014474228.1\|1539881_1542056_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_017192.1\|WP_014474232.1\|1545555_1546233_+\|chemotaxis-protein-CheD	unknown	unknown	gnl\|CDD\|319352
NC_017192.1\|WP_014474237.1\|1549498_1549777_-\|hypothetical-protein	unknown	unknown	unknown
NC_017192.1\|WP_014474240.1\|1552301_1553129_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_017192.1\|WP_014474239.1\|1550319_1552287_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NC_017192.1\|WP_014474247.1\|1558382_1559213_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|181452
NC_017192.1\|WP_014474231.1\|1544713_1545559_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_017192.1\|WP_014474229.1\|1542223_1542592_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NC_017192.1\|WP_014474244.1\|1556034_1556586_+\|HobA-domain-containing-protein	unknown	unknown	gnl\|CDD\|338263

Protein	Function_ID	Function_description	E-value
NC_017192.1\|WP_014474245.1\|1556588_1557218_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236274	PRK08485, PRK08485, DNA polymerase III subunit delta'; Validated.	3.67872e-49
NC_017192.1\|WP_014474247.1\|1558382_1559213_-\|prephenate-dehydrogenase	gnl\|CDD\|181452	PRK08507, PRK08507, prephenate dehydrogenase; Validated.	1.65357e-168
NC_017192.1\|WP_014474236.1\|1549141_1549498_+\|CbiX/SirB-N-terminal-domain-containing-protein	gnl\|CDD\|239509	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.	4.69371e-29
NC_017192.1\|WP_014474240.1\|1552301_1553129_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.97839e-87
NC_017192.1\|WP_014474246.1\|1557229_1558369_+\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.8402e-102
NC_017192.1\|WP_041654776.1\|1553182_1554250_-\|coproporphyrinogen-III-oxidase-family-protein	gnl\|CDD\|181428	PRK08446, PRK08446, coproporphyrinogen III oxidase family protein.	0
NC_017192.1\|WP_014474243.1\|1554820_1556032_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_017192.1\|WP_014474233.1\|1546256_1547330_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	3.1116e-132
NC_017192.1\|WP_041654777.1\|1559302_1561579_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_017192.1\|WP_014474234.1\|1547340_1547928_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.65455e-07
NC_017192.1\|WP_014474235.1\|1548035_1549088_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|376070	pfam18644, Phage_int_SAM_6, Phage integrase SAM-like domain. Xer recombinases are members of the tyrosine site-specific recombinase superfamily, a large group of enzymes that catalyze DNA breakage and rejoining using a conserved tyrosine nucleophile. Tyrosine recombinases promote various programmed DNA rearrangements including the monomerization of phage, plasmid and chromosome multimers, resolution of hairpin telomeres, and the movement of virulence and antibiotic resistance carrying integrative mobile genetic elements. Structural analysis of Helicobacter pylori XerH indicates that this N-terminal domain consisting of six alpha-helices contacts the DNA using a four-helix bundle.	8.54215e-72
NC_017192.1\|WP_014474228.1\|1539881_1542056_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_017192.1\|WP_014474232.1\|1545555_1546233_+\|chemotaxis-protein-CheD	gnl\|CDD\|319352	cd16352, CheD, chemotaxis protein CheD stimulates methylation of methyl-accepting chemotaxis proteins. This family contains bacterial chemotaxis protein CheD that stimulates methylation of methyl-accepting chemotaxis proteins (MCPs). The CheD chemotaxis gene is not found in the Escherichia coli genome, but is present in many other organisms, including B. subtilis, where CheD appears to have two separate roles; it binds to chemoreceptors to activate them as part of the CheC/CheD/CheYp adaptation system, and it deamidates selected residues to activate chemoreceptors, enabling them to mediate amino acid chemotaxis. CheD has been shown to catalyze amide hydrolysis of specific glutaminyl side chains of the B. subtilis chemoreceptors McpA, McpB and McpC; deamination by CheD is required for the chemoreceptors to effectively transduce signals to the CheA kinase. CheD's ability to bind the receptors is controlled by CheC via a competitive binding mechanism; substituting Gln into the receptor motif of the signal-terminating phosphatase, CheC, turns the inhibitor into a receptor-modifying deamidase CheD substrate. Also, CheYp increases the affinity of CheD for CheC, controlling CheD binding to the receptors through its interactions with CheC. Thus, high levels of CheYp means CheC is a better binding target for CheD than the receptors, resulting in decreased CheA activity. The CheD structure reveals a distant homology with a class of bacterial toxins represented by the cytotoxic necrotizing factor 1 (CNF1) as well as a class of proteins of unknown function represented by B. subtilis YfiH. An invariant Cys-His pair forming a catalytic dyad is observed, and is required by the toxins for deamidation activity.	2.12887e-47
NC_017192.1\|WP_014474230.1\|1542605_1544708_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NC_017192.1\|WP_014474242.1\|1554305_1554803_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	6.55987e-71
NC_017192.1\|WP_014474239.1\|1550319_1552287_-\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NC_017192.1\|WP_014474231.1\|1544713_1545559_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.56379e-64
NC_017192.1\|WP_014474229.1\|1542223_1542592_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.65051e-59
NC_017192.1\|WP_014474244.1\|1556034_1556586_+\|HobA-domain-containing-protein	gnl\|CDD\|338263	pfam12163, HobA, DNA replication regulator. This family of proteins is found exclusively in epsilon-proteobacteria. Proteins in this family are approximately 180 amino acids in length. The structure of HobA is a modified Rossmann fold consisting of a five-stranded parallel beta-sheet (beta1-5) flanked on one side by alpha-2, alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on the other. The alpha-1 helix is extended away from and has minimal interaction with the globular part of the protein. Four monomers interact to form a tetrameric molecule. Four calcium atoms bind to the tetramer and these binding sites may have functional relevance. The function of HobA is to regulate DNA replication and its does this by binding to DNA-A, but the exact mechanism of how this regulation occurs is purely speculative.	1.68301e-91

>NC_017192.1|WP_014474237.1|1549498_1549777_-|hypothetical-protein
MIISVDKDSLFNLFGVNNFYSLETTIDNMAPSLVEYHLSNFYNYNNDNVYFNKRDVEESVSIGEYNIYIDYDKNIYLEVTESNLDDNTQTLW
>NC_017192.1|WP_014474236.1|1549141_1549498_+|CbiX/SirB-N-terminal-domain-containing-protein
MEALIIVAHGSKMKSSNDEIVTIVEKIKESNENTNLHVFHAFLESTDPSLFISINNAISKKCKKIKIFPYFLAAGKHVTEDIPCEIKKFKKQYPELEFILLPHIGLCNGIENMIISNS
>NC_017192.1|WP_014474235.1|1548035_1549088_+|tyrosine-type-recombinase/integrase
MRYDLDFKNSFNDTFLFWIERFVRNKLTTLSNRQVTDKEKLASIIQQLVKGTKSIDELATIVKEARNIGLAGVNTYFNPLFKLYNFIITLGLASMREIDEELLSDFLASETSSLSDASKKNHRIALLSLFSYIDKQNQNEDGSSYLFKIELKNWGGLSGKSGTKLPSFMNKDEIDRFLNAIDTFEFSDNTSYRNRLILKIIIYTGIRVSEILNLKIKDMFKEDNVYLLQIRGKGNKPRVVMIKSSIIETDLKNWLDMRVCNSDLLVCNQKGDRLTQAYISRIVENILISAGIRKEKNGAHMLRHSFATLLYAKHHDLILVQEALGHADINTSRIYTHFDKERLRKTTEIF
>NC_017192.1|WP_014474234.1|1547340_1547928_+|flavodoxin-family-protein
MFINIIDCTEKSDKNIEDIISFLINYFDSLNIKNERIRFKDFKIVTCTQCRCCTLIKSDNPTKCVIKDDMNDLLDKIEEATAFVIVADRNDLFNRNKLFEKVESRLIAYHYWPYGQAHSTPRKTILDKTSILINYNTTKYFMNHSFYMARMYMEEASVSIGAKVLDWQVIIPTNDLIKDYAKRLKEMADKLVNNS
>NC_017192.1|WP_014474233.1|1546256_1547330_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MYTVLVIDDSPSMRRIIKDMINSIEEFEVIGVATDAYDAREKIKEYEPDLVTIDINMPKMDGVTFLRNLMRLHPMPAVVISGESVRGNDIFDDGAVGFIPKPDTGESMISFQHRIKDTLLNLTFLLKRYTLKKPPALKKNYKPTINVEYKVHPDEVIPLRASTFPGMKLIAIGSSTGGVESLLKVFKRLPGDLPPILITQHIPYGFSNSFAQRLNDNSEVNVCEAKDGMILERGHGYLAPGNMHLTIEKYANEYRTKLLDTKKVSQHKPSVDVLFRSVNNAVGGAAMAVMMTGMGDDGTIAMKELHDNGAYTVAQNEESCVVFGMPMKAIQAGAVKDIVHLDEIADYIIDFSKGKKR
>NC_017192.1|WP_014474232.1|1545555_1546233_+|chemotaxis-protein-CheD
MIVIGHKDGSIEKTSAVRYTQKTKGYLTHTVIGGEFAVGSDTDQIAFKTLLGSCVAIMFYDKNTKIKGMNHFLLPKTNNTNDDMKYGLYSVEAMLNEMYKLGCSKGNMVAKISGGADIMQINMSNQSIGFRNVEFAKDFCKSEGFKLISEHTRGEHGRLILLANDFETFIKVTQKSETDSKILSEEKYLQQEITKAPVIKEYVGGVDLFGIDTKEVEPQMEIELF
>NC_017192.1|WP_014474231.1|1544713_1545559_+|protein-glutamate-O-methyltransferase-CheR
MAYTTQDVHNKVKKLLYSLTGITLSENKDIMISNRIDKLKRNCRYSGDIMDLLNSIEEGNNVTEFINSFTTNKTHFFREDFHFVDLKDRILPNFATSGNKINMYCSASSTGEEPYSMAMTVFKAMEDLGKHINASIIATDIDTSVLQYAANGIYRYSKSSKEFPSWIKPQKYFKRRVQKNLSGEEILIKVNDELKKMITFHVMNLSSSSYPFSKNQFDVIFCRNVLIYFSAEDQNIILKKLFSHLKIGGTLYLGHSENPQDLVPFVKRVGQNIFVKEKEII
>NC_017192.1|WP_014474230.1|1542605_1544708_+|chemotaxis-protein-CheA
MSFDISKYREMFLEEAEELFESADNVLLEAENNGTLTDEEMGQLFRDVHTLKGSGASVELALFAEFTHDVENLMDKLRNHKIEFIPEMAETLIDGLDVMKEILDLEVADKLDRDTFTEMTSSLLEEIRAYSNGGNVAKKEVEQPVVEKIEKPKEEPIKVKEEVVVDSDNFGFFDDDLNEQRDNKNKPYGIFADDEIDEEHENIGFYDDDLETISKNTKDSDFKISNEDKDNFGFFDEMPELTPSAVMQTNDIEEKVIAESEIEKTKPAQNNTPVVRKQKTASEDNEEATTKKSVSNNNNSIRVNLDKIDLLMNNVGDLVITNAMLTQFSSTIEESKTRNSVLERLELLERHIRDMQDSIMSIRMVPMDSIYSKFPKVVRDISKKLGKKVEFKHYGDNVEIDKAMSEGLTDPLMHIIRNSLDHGIETPSERELTGKPEVGSISISAEQANGQMIITIEDDGKGINSEKVAQKALEQGQIDENQYNSMTENEKALLIFGAGVSTADQITDISGRGVGMDVVKTNIHKLGGAIKLDTHLGEGTTITIMLPLTLAILDGLDIRVGNQKYILPLSSIVESLQPTSDMIKKIGDGTQDLLMLREEFIPVVKLHQLFSLEKSFDKLEDGMLIVVKSGNTKVALSIDEFLNQHQVVVKPLDKNFRSVQGIGAATVRGDGSIGLILDVVGIINAQIKIEKDMNLAKRAS
>NC_017192.1|WP_014474229.1|1542223_1542592_+|response-regulator
MAKLLIVDDSTMLRDMLNYALNEGGYTDVTEAVDGVDGLAKAKAADFDLIITDVNMPNMDGLTLIGELRKISQYSKKPILVLTTERSDEMKAKGKAAGATGWIVKPFVPDQLLKAVNIVLSR
>NC_017192.1|WP_014474228.1|1539881_1542056_+|polyribonucleotide-nucleotidyltransferase
MATVCEFDLNGKQEVFEFEKVAKQANGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQYIEKTYAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADKDVDLQTLSLNAANAALYTSNLPIKKSVCGVRVGKIENELVINPTSEQLENSTLDLYVAGSKDELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEESLVEAISFAQNALKESNLTYEKAFEEVCKEKVEVELIKFTIDESVINYVRDNFSNEIKEAIKKLAKSERATQLKDVAKMISSNEYCSTNELDFTTIYEAVSIVKREIVRNMIVSDKVRADGRGLKDVRPITIETNILPSTHSSCLFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMERFMVHYNFPGFSVGEAKPMFGVGRRELGHGNLAKKALEATIDDDYTETIRLVSEILESNGSSSMATVCGGSLALKAAGVPISDLVAGVAMGMVVEGDNYSVLTDIMGLEDHDGDMDFKVAGTNKGITALQMDIKLGGIELSVLKEALLQAKEGRVHILSLMNEAAKDIVPSEALPLVEQFAIDPSKIMVIIGKAGATIKEIIEKFTVSIDLDRDSGTVKVSGGNKQNVLDACEHIKTISNNAPARKDAPKNVDFEKLYAVDEVVTGKVERVVDFGAFILLPKGGEGLLHISKISKERVNNVSDVLSVGQEIEVKVLKVKKDRIELSSN
>NC_017192.1|WP_014474239.1|1550319_1552287_-|M3-family-metallopeptidase
MFKEFDLSNLENSKELLEKFLDENRKKVDELLKIENKTYKNFVLPFQEIGESINDFLTPIFHIDSVKNSEITTKVYEECIPVISKYETEISQNENIYLSFKDIQSKEKSSLNNIQNKVLENEIRDFKLSGCHLENDKKKRLEEISLRLSELSHKFSQNLLNATKSFEMIIDNFEDVKEIPASDLELAKFEEEGITKYKFTLQMPSYLAYITYGTSREKREEIYKAYCTRAPENGKIIEELLALKDEKVKILGFENYAQYSLATKMASKEEDVVSFLEELGSKAKNKAKEELEEIKALALKDGITDFRSSDMSYYSEKLKKAQYDLDEEYYRPYFEQQSVLNGFFDFLHQMFNIKFTKANTPAWDEKVKVYDLSEDGKTVARIYIDLEARKEKRGGAWMNNWHTYHRNSNGEIKLPTAYIVGNFPQSTEETPSLLRHSDVVTLFHEMGHALHHLLSKIEEPFVSGISGVAWDTVEFPSQFLEYFSYDKDVLKLFAKHYQTGEVLDDAAINRIIKAKNFQSSLATVRQVEFALFDFKLHQKLYKTEEGIQNLLDSVREKFSAMIPPKYNKFQNGFSHIFSGGYSAGYYSYKWAEVLSADAFYMFIDSGNIFNKELGIKYRDTILSQGGSYDMDKLFFNFAQREPSVDSLLKIDGIIS
>NC_017192.1|WP_014474240.1|1552301_1553129_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTIKEIVRKYTNQLKLVTHIPAKEVEILIMHLLEKNTIWLHLNYNQEFLKEKELEILVKKRATNYPLEYIINKASFYGEMFIVKEGVLIPRPETEILVENAVEILKDKKEEIKVLEIGTGSGIISVMLAILIENIKIIAVDINEKALELAKQNAIKHGVKNKIEFRLSNLYENIQEDDIFMTISNPPYIANNYKLPTNVKYEPSNALFGGDIGDELLKDIIKQTNDKKIPYLLCEMGFDQKAPLENYFKEFEVESHSFYKDYESFDRGFTLKFRK
>NC_017192.1|WP_041654776.1|1553182_1554250_-|coproporphyrinogen-III-oxidase-family-protein
MLLYIHIPFCDSKCFYCAFNSYTDKFSLKHEYMKALKKQLKYNLDNYVLKRDKKIETVFIGGGTPSTIKAFEYEEIFSMIKPFLEKNAEITTEANPNSASFEWLQSMKDLGVNRVSFGVQSFENNKLKFLGRSHNSNSAIKAIQNANSIGFKGINCDIIYGVQGDTIETIKSDLDVAFSLPITHLSAYSLTIEEGTKFFDRSSVKIDDEELSYEIFDYISKKGFTQYEISNFAKNKESESKHNYGYWQHKEYLGVGAGAVGYINSQREYPSKSIEEYISNPLFFEVEEIDETDIKTEKILLGFRCSNGVELELFNEKEKEKIDELIQYDKLYIENEKVFNKNFLLADELALYILD
>NC_017192.1|WP_014474242.1|1554305_1554803_+|RNA-pyrophosphohydrolase
MTDKKEMTINHEKKKFRPNVAAIVLSAKYPHKCEIFIASRTDVENAWQFPQGGIDEGESSKEALFRELEEEIGTRDIEIIAEYPTWVSYEFPPAIAKRMYPYDGQRQKYYLVKLKKGAKININTEIPEFSEYKFVPTKNIYEYITFFKRTVYKQVLKYFKNEGYI
>NC_017192.1|WP_014474243.1|1554820_1556032_+|aspartate-kinase
MLKVLKFGGTSVGTLDRIQNVANIIKKIRDEGDDVIAVVSAMSGETNKLLEYAEYYSKTPKLDEIDMLLSSGERVTSALLSIALNEMGYKAMSMSGRQAGIVTDNAHTKARIESIDTTQMKKAIKDGNIIIVAGFQGVAQDTLRVSTLGRGGSDLTAVAIAGAIEADLCEIYTDVDGIYTTDPRIEPKAKKLEKISYDEMLELASLGAKVLQNRSVEMAKKLNVNLVSRSSFTPEVEGTLITKEENIMEKPVVSGIALDKNQIRVGMYGVTDRPGIASAIFTALADANINVDMIVQTRGLDGTTDLDFTIPTTDFEICKKVMERFREQAKNIDYNEAICKVSIVGVGMKSHTGVASKAFTALANENINIRIISTSEIKISMIVDLKYAELAVRALHDAYHLDN
>NC_017192.1|WP_014474244.1|1556034_1556586_+|HobA-domain-containing-protein
MQEFLNWTVNTIREDRLISPWLEEKKYEWTPLVSKNINNLLERGFSIIVVTDKEREWFLEYILANINSTKLNRPFLPYYDFKSFYRYIDAVKSDEDISYIKDMLSISFPNGYCFWYIGKSQDVRAIIPKVSKNSFLWLFDEEKQDAFNLKSSDEALDMKLLQMFRLYNKSVSASLFAEINVEN
>NC_017192.1|WP_014474245.1|1556588_1557218_+|DNA-polymerase-III-subunit-delta'
MIEFIENSSILIVNDIESTLNELLTKYPLHSTRIIKNEEKEEFLIAQATQAIKEAYIASNEKKYIFLCGSTFRKEAQNSLLKILEEPPRNVVFIIITNSKTSLLPTIYSRLPYKYLKKSLIKFESTLNINKLDLRDIYNFLKENQKISKQEAKDIVESILLKVNNQKIKLSQKELEFFSKSIKLLELNSRPINVLTTLLLFLANQKNKN
>NC_017192.1|WP_014474246.1|1557229_1558369_+|dihydropteroate-synthase
MQTYKISISDTKKFYENLGCDKGGIEILSKKSKLHTLYIKDLHVGAANILKQDALSIGADLAVPSGVIVARDKYVDAVLIGTTKHFEVLSRKELAQPFGLKELAKSLKDYVKEQNYKTKIMGVLNANEDSFFKNSRFDNSSASIKIEKMIEDGANIIDIGAVSSRPGSLAVTEDIELERVKDIVQTIYKNKYYEKVDFSIDSFAPKVIDYVLNHGFKIVNDITGLENDEVCKLVAKYNAQAIIMHMQNNQTNMQDNPIYENVILDIDTYLKNQIQKAKSFGINDIVLDVGIGFGKTLEHNLLLLKNLEHFKHFGYELLIGASRKSMINMITPTEVVDRLSGTLAIHLESIRYGASIIRCHDVKEHYQAIKVFEAINNIN
>NC_017192.1|WP_014474247.1|1558382_1559213_-|prephenate-dehydrogenase
MNVGIIGLGLMGGSLAKAVKRYGIAKKVYGFTNSEKNKKDILDLNLVDELVDLETLKKVSDVIILAIPVDAIISMFPNFLDIDENTTIIDMGSTKEYIVKNIPEKIRKNFIAAHPMTGTEKSGPKAAIDDLYEGKTVVFCDLEDNANIHVNKAFRIFQEIGMRIVVMDSSQHDIHACYISHLPHIISFSLANTVMSHEDPKAIIALAAGGFKDMSRIAKSSPRMWSDIFKQNRKNLLAAIETFENQLNEAKKMIEDENYEVLEDWMKKANTLHEIL
>NC_017192.1|WP_041654777.1|1559302_1561579_+|outer-membrane-protein-assembly-factor-BamA
MKIRIVVKNKVVLLSLACATALSANTIKSIEYKDVNKISPQILNETLNMNVGDELDENKLNDAVINFYKQGYFEDIKVINENGNLKLIFKEKPSIASIDIKGYKSRAEDIDTLKTVLRLKKGSMYTEKKVKEAKEKLLSMLESEGYINSVVETEVEKINEQSLKLTFNVNKGDEIIIKKANYHGADKLEQDEFDHVTANKEKEFASWWFGQNDGEVKIDQLKYDARRINDLYYEKGYLDAQVKEPFLDIDFASNQAKLDFFITEGEKYTTNDIKIYLDSSIVDPATIYPELKLIVGNTFNIKKLRQDQDYIKTQVANQGYAFADVRFDLKKNEKEQKVDVVFNVIPGKKVYINDVKISGNNRTLDRVIRRDVYLAPGDLYNLTDFKDSTNKLKRSRFFEDVQIEEKRVSDTKMDIVVKVTEAPTGSLMLGGGYGSYDKFMVNGSISDVNIFGSGLALALSADLSARSNRFELSLKNPAINDSNYNGEVEIHSTESEINRDTYDSTIDTKGFSVALGRELVRNLYAGARYRLDFVSEDYDYSDEFKNNYNPLFGEIYESQDYTSSSITPYLNYDNTDDYYFPREGYRAGISAEYAGVGGDSKYIKPSAYLKYFYSLEDLTELDWVLRLKTQMKILIDNGQINQGDSLYLGGPKTLRGYKSYAFPSNETGYKTEPYKNMWASSAEMSFPLIPSAKMRWGMFYDYGMIGQDTFNDIERSGAGVLLEWISPMGPLQLIFARALDDEPGDDTSSFEFSLGASF

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Crispr_ID: NC_017192_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017192_3

1923285-1925335

Unclear

Consensus_repeat	Method
GTTTCAATACATTATATGTTTAAGTTCAAG	PILER-CR
GTTTCAATACATTATATGTTTAAGTTCAAG	CRISPRCasFinder
GTTTCAATACATTATATGTTTAAGTTCAAG	CRT

31 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_017192_3

>merge|NC_017192|3|1923285-1925335|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACATTATATGTTTAAGTTCAAGCCATTTTTCGATAGTAACAGTTTTCTTTTCTTCCTGTTTCAATACATTATATGTTTAAGTTCAAGAACAGAGAGTTTATAGAAAAGCATTACGGAATAAAGTTTCAATACATTATATGTTTAAGTTCAAGAGTTCTCATACTCATCTGGATCTGGATTAATCTGGTTTCAATACATTATATGTTTAAGTTCAAGTTATTTTATTTTGTTTTTCTGTTTTTTCTTTGCCGTTTCAATACATTATATGTTTAAGTTCAAGTTAGAAAAAGAAATCAATACGATTTATATATTAACGTTTCAATACATTATATGTTTAAGTTCAAGTAACATTTTATGTTTACTGATTTCTAATTTTAAAAAGTTTCAATACATTATATGTTTAAGTTCAAGAAATCTTGTGCAGTTGCGATGGCTAATCGATCGAAGTTTCAATACATTATATGTTTAAGTTCAAGTTCTCATAATAGTGTGTTAAAACTCGATAATGTATAGTTTCAATACATTATATGTTTAAGTTCAAGGTAGGACTAAAGATTACTGTTCTGACAATTGTCGGTTTCAATACATTATATGTTTAAGTTCAAGAATATCTTTAATATTTGTGTATTGTAATAAATTTTAGTTTCAATACATTATATGTTTAAGTTCAAGAGTTTTATTTTTATTACTTGGCTTTGTAATAAGTAAGTTTCAATACATTATATGTTTAAGTTCAAGTTATGACTACTGCATCACAAGCAGCTGTTGAATAGTTTCAATACATTATATGTTTAAGTTCAAGATAGTGCTTTACTAAAATTTTCACTTACTCCCTTGTTTCAATACATTATATGTTTAAGTTCAAGAAATAAAAGAGCCAGAATCTTTTATATTAAACTCATGTTTCAATACATTATATGTTTAAGTTCAAGCATTATTTTTGTATATGCATATAGAGTTAAACCCATGTTTCAATACATTATATGTTTAAGTTCAAGGATAGTAAATATACTTAACATTATAATAACTGTATGGTTTCAATACATTATATGTTTAAGTTCAAGAGAACACAATTCAAGAAATGGATACTTATGTCTTGTTTCAATACATTATATGTTTAAGTTCAAGTAATGCTATTGTTAAAAATGAACCATACAAAGAGGAGTTTCAATACATTATATGTTTAAGTTCAAGCTTTTTTTTGCTTCCAATGGCTTCTATGACCTTTATTGTTTCAATACATTATATGTTTAAGTTCAAGAATTTAACTACGTTATTTGATGGAGCAATCAATTCGTTTCAATACATTATATGTTTAAGTTCAAGTTTTAGTTTTTGGTGTACTAATAAAATTATTTGTAGTTTCAATACATTATATGTTTAAGTTCAAGACCTGAAGCAATCTGAAAAGTATAAGAGTTAAATAAGTTTCAATACATTATATGTTTAAGTTCAAGATAAATGGATTCTTCCTAAGTTTGGCTCTATTGAAATGTTTCAATACATTATATGTTTAAGTTCAAGCCAGTTCCTGAACCACCATTTAAAGCACCATCTAAAGTTTCAATACATTATATGTTTAAGTTCAAGAATAAAGCAAAAGGATTGAACGGAACAGTTATATTGTTTCAATACATTATATGTTTAAGTTCAAGGGTTTAGAAGAAAGTGGTTATTGGTGTCTTGTTCAGTTTCAATACATTATATGTTTAAGTTCAAGAGTATCAAATCTGATACTTATTTTTTATTTATACGTTTCAATACATTATATGTTTAAGTTCAAGCTTCGTATTTATTCATATCAACCATACCATCTTTATGTTTCAATACATTATATGTTTAAGTTCAAGCTATTTCATAAGCATTATCGTAAAATTCTCTATTGTTTCAATACATTATATGTTTAAGTTCAAGTCTCAAAGTAATTTTAATGTTGTATTGCAAAATGGGTTTCAATACATTATATGTTTAAGTTCAAGTAAATGGATATAAAGAAATAAACAAAGAAGAGTGGTTTCAATACATTATATGTTTAAGTTCAAG

>NC_017192|3|1|1923285-1925335|PILER-CR
GTTTCAATACATTATATGTTTAAGTTCAAG	CCATTTTTCGATAGTAACAGTTTTCTTTTCTTCCT
GTTTCAATACATTATATGTTTAAGTTCAAG	AACAGAGAGTTTATAGAAAAGCATTACGGAATAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTTCTCATACTCATCTGGATCTGGATTAATCTG
GTTTCAATACATTATATGTTTAAGTTCAAG	TTATTTTATTTTGTTTTTCTGTTTTTTCTTTGCC
GTTTCAATACATTATATGTTTAAGTTCAAG	TTAGAAAAAGAAATCAATACGATTTATATATTAAC
GTTTCAATACATTATATGTTTAAGTTCAAG	TAACATTTTATGTTTACTGATTTCTAATTTTAAAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AAATCTTGTGCAGTTGCGATGGCTAATCGATCGAA
GTTTCAATACATTATATGTTTAAGTTCAAG	TTCTCATAATAGTGTGTTAAAACTCGATAATGTATA
GTTTCAATACATTATATGTTTAAGTTCAAG	GTAGGACTAAAGATTACTGTTCTGACAATTGTCG
GTTTCAATACATTATATGTTTAAGTTCAAG	AATATCTTTAATATTTGTGTATTGTAATAAATTTTA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTTTTATTTTTATTACTTGGCTTTGTAATAAGTAA
GTTTCAATACATTATATGTTTAAGTTCAAG	TTATGACTACTGCATCACAAGCAGCTGTTGAATA
GTTTCAATACATTATATGTTTAAGTTCAAG	ATAGTGCTTTACTAAAATTTTCACTTACTCCCTT
GTTTCAATACATTATATGTTTAAGTTCAAG	AAATAAAAGAGCCAGAATCTTTTATATTAAACTCAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CATTATTTTTGTATATGCATATAGAGTTAAACCCAT
GTTTCAATACATTATATGTTTAAGTTCAAG	GATAGTAAATATACTTAACATTATAATAACTGTATG
GTTTCAATACATTATATGTTTAAGTTCAAG	AGAACACAATTCAAGAAATGGATACTTATGTCTT
GTTTCAATACATTATATGTTTAAGTTCAAG	TAATGCTATTGTTAAAAATGAACCATACAAAGAGGA
GTTTCAATACATTATATGTTTAAGTTCAAG	CTTTTTTTTGCTTCCAATGGCTTCTATGACCTTTATT
GTTTCAATACATTATATGTTTAAGTTCAAG	AATTTAACTACGTTATTTGATGGAGCAATCAATTC
GTTTCAATACATTATATGTTTAAGTTCAAG	TTTTAGTTTTTGGTGTACTAATAAAATTATTTGTA
GTTTCAATACATTATATGTTTAAGTTCAAG	ACCTGAAGCAATCTGAAAAGTATAAGAGTTAAATAA
GTTTCAATACATTATATGTTTAAGTTCAAG	ATAAATGGATTCTTCCTAAGTTTGGCTCTATTGAAAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CCAGTTCCTGAACCACCATTTAAAGCACCATCTAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AATAAAGCAAAAGGATTGAACGGAACAGTTATATT
GTTTCAATACATTATATGTTTAAGTTCAAG	GGTTTAGAAGAAAGTGGTTATTGGTGTCTTGTTCA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTATCAAATCTGATACTTATTTTTTATTTATAC
GTTTCAATACATTATATGTTTAAGTTCAAG	CTTCGTATTTATTCATATCAACCATACCATCTTTAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CTATTTCATAAGCATTATCGTAAAATTCTCTATT
GTTTCAATACATTATATGTTTAAGTTCAAG	TCTCAAAGTAATTTTAATGTTGTATTGCAAAATGG
GTTTCAATACATTATATGTTTAAGTTCAAG	TAAATGGATATAAAGAAATAAACAAAGAAGAGTG
GTTTCAATACATTATATGTTTAAGTTCAAG

>NC_017192|3|3|1923285-1925335|CRISPRCasFinder
GTTTCAATACATTATATGTTTAAGTTCAAG	CCATTTTTCGATAGTAACAGTTTTCTTTTCTTCCT
GTTTCAATACATTATATGTTTAAGTTCAAG	AACAGAGAGTTTATAGAAAAGCATTACGGAATAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTTCTCATACTCATCTGGATCTGGATTAATCTG
GTTTCAATACATTATATGTTTAAGTTCAAG	TTATTTTATTTTGTTTTTCTGTTTTTTCTTTGCC
GTTTCAATACATTATATGTTTAAGTTCAAG	TTAGAAAAAGAAATCAATACGATTTATATATTAAC
GTTTCAATACATTATATGTTTAAGTTCAAG	TAACATTTTATGTTTACTGATTTCTAATTTTAAAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AAATCTTGTGCAGTTGCGATGGCTAATCGATCGAA
GTTTCAATACATTATATGTTTAAGTTCAAG	TTCTCATAATAGTGTGTTAAAACTCGATAATGTATA
GTTTCAATACATTATATGTTTAAGTTCAAG	GTAGGACTAAAGATTACTGTTCTGACAATTGTCG
GTTTCAATACATTATATGTTTAAGTTCAAG	AATATCTTTAATATTTGTGTATTGTAATAAATTTTA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTTTTATTTTTATTACTTGGCTTTGTAATAAGTAA
GTTTCAATACATTATATGTTTAAGTTCAAG	TTATGACTACTGCATCACAAGCAGCTGTTGAATA
GTTTCAATACATTATATGTTTAAGTTCAAG	ATAGTGCTTTACTAAAATTTTCACTTACTCCCTT
GTTTCAATACATTATATGTTTAAGTTCAAG	AAATAAAAGAGCCAGAATCTTTTATATTAAACTCAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CATTATTTTTGTATATGCATATAGAGTTAAACCCAT
GTTTCAATACATTATATGTTTAAGTTCAAG	GATAGTAAATATACTTAACATTATAATAACTGTATG
GTTTCAATACATTATATGTTTAAGTTCAAG	AGAACACAATTCAAGAAATGGATACTTATGTCTT
GTTTCAATACATTATATGTTTAAGTTCAAG	TAATGCTATTGTTAAAAATGAACCATACAAAGAGGA
GTTTCAATACATTATATGTTTAAGTTCAAG	CTTTTTTTTGCTTCCAATGGCTTCTATGACCTTTATT
GTTTCAATACATTATATGTTTAAGTTCAAG	AATTTAACTACGTTATTTGATGGAGCAATCAATTC
GTTTCAATACATTATATGTTTAAGTTCAAG	TTTTAGTTTTTGGTGTACTAATAAAATTATTTGTA
GTTTCAATACATTATATGTTTAAGTTCAAG	ACCTGAAGCAATCTGAAAAGTATAAGAGTTAAATAA
GTTTCAATACATTATATGTTTAAGTTCAAG	ATAAATGGATTCTTCCTAAGTTTGGCTCTATTGAAAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CCAGTTCCTGAACCACCATTTAAAGCACCATCTAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AATAAAGCAAAAGGATTGAACGGAACAGTTATATT
GTTTCAATACATTATATGTTTAAGTTCAAG	GGTTTAGAAGAAAGTGGTTATTGGTGTCTTGTTCA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTATCAAATCTGATACTTATTTTTTATTTATAC
GTTTCAATACATTATATGTTTAAGTTCAAG	CTTCGTATTTATTCATATCAACCATACCATCTTTAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CTATTTCATAAGCATTATCGTAAAATTCTCTATT
GTTTCAATACATTATATGTTTAAGTTCAAG	TCTCAAAGTAATTTTAATGTTGTATTGCAAAATGG
GTTTCAATACATTATATGTTTAAGTTCAAG	TAAATGGATATAAAGAAATAAACAAAGAAGAGTG
GTTTCAATACATTATATGTTTAAGTTCAAG

>NC_017192|3|1|1923285-1925335|CRT
GTTTCAATACATTATATGTTTAAGTTCAAG	CCATTTTTCGATAGTAACAGTTTTCTTTTCTTCCT
GTTTCAATACATTATATGTTTAAGTTCAAG	AACAGAGAGTTTATAGAAAAGCATTACGGAATAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTTCTCATACTCATCTGGATCTGGATTAATCTG
GTTTCAATACATTATATGTTTAAGTTCAAG	TTATTTTATTTTGTTTTTCTGTTTTTTCTTTGCC
GTTTCAATACATTATATGTTTAAGTTCAAG	TTAGAAAAAGAAATCAATACGATTTATATATTAAC
GTTTCAATACATTATATGTTTAAGTTCAAG	TAACATTTTATGTTTACTGATTTCTAATTTTAAAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AAATCTTGTGCAGTTGCGATGGCTAATCGATCGAA
GTTTCAATACATTATATGTTTAAGTTCAAG	TTCTCATAATAGTGTGTTAAAACTCGATAATGTATA
GTTTCAATACATTATATGTTTAAGTTCAAG	GTAGGACTAAAGATTACTGTTCTGACAATTGTCG
GTTTCAATACATTATATGTTTAAGTTCAAG	AATATCTTTAATATTTGTGTATTGTAATAAATTTTA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTTTTATTTTTATTACTTGGCTTTGTAATAAGTAA
GTTTCAATACATTATATGTTTAAGTTCAAG	TTATGACTACTGCATCACAAGCAGCTGTTGAATA
GTTTCAATACATTATATGTTTAAGTTCAAG	ATAGTGCTTTACTAAAATTTTCACTTACTCCCTT
GTTTCAATACATTATATGTTTAAGTTCAAG	AAATAAAAGAGCCAGAATCTTTTATATTAAACTCAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CATTATTTTTGTATATGCATATAGAGTTAAACCCAT
GTTTCAATACATTATATGTTTAAGTTCAAG	GATAGTAAATATACTTAACATTATAATAACTGTATG
GTTTCAATACATTATATGTTTAAGTTCAAG	AGAACACAATTCAAGAAATGGATACTTATGTCTT
GTTTCAATACATTATATGTTTAAGTTCAAG	TAATGCTATTGTTAAAAATGAACCATACAAAGAGGA
GTTTCAATACATTATATGTTTAAGTTCAAG	CTTTTTTTTGCTTCCAATGGCTTCTATGACCTTTATT
GTTTCAATACATTATATGTTTAAGTTCAAG	AATTTAACTACGTTATTTGATGGAGCAATCAATTC
GTTTCAATACATTATATGTTTAAGTTCAAG	TTTTAGTTTTTGGTGTACTAATAAAATTATTTGTA
GTTTCAATACATTATATGTTTAAGTTCAAG	ACCTGAAGCAATCTGAAAAGTATAAGAGTTAAATAA
GTTTCAATACATTATATGTTTAAGTTCAAG	ATAAATGGATTCTTCCTAAGTTTGGCTCTATTGAAAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CCAGTTCCTGAACCACCATTTAAAGCACCATCTAAA
GTTTCAATACATTATATGTTTAAGTTCAAG	AATAAAGCAAAAGGATTGAACGGAACAGTTATATT
GTTTCAATACATTATATGTTTAAGTTCAAG	GGTTTAGAAGAAAGTGGTTATTGGTGTCTTGTTCA
GTTTCAATACATTATATGTTTAAGTTCAAG	AGTATCAAATCTGATACTTATTTTTTATTTATAC
GTTTCAATACATTATATGTTTAAGTTCAAG	CTTCGTATTTATTCATATCAACCATACCATCTTTAT
GTTTCAATACATTATATGTTTAAGTTCAAG	CTATTTCATAAGCATTATCGTAAAATTCTCTATT
GTTTCAATACATTATATGTTTAAGTTCAAG	TCTCAAAGTAATTTTAATGTTGTATTGCAAAATGG
GTTTCAATACATTATATGTTTAAGTTCAAG	TAAATGGATATAAAGAAATAAACAAAGAAGAGTG
GTTTCAATACATTATATGTTTAAGTTCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017192.1\|WP_014474605.1\|1930372_1931686_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_017192.1\|WP_014474609.1\|1934571_1935453_-\|membrane-protein	unknown	unknown	gnl\|CDD\|153122
NC_017192.1\|WP_014474593.1\|1917306_1919421_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NC_017192.1\|WP_014474596.1\|1919976_1920921_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|222877
NC_017192.1\|WP_014474607.1\|1933105_1933624_-\|hypothetical-protein	unknown	unknown	unknown
NC_017192.1\|WP_014474608.1\|1933721_1934468_-\|CRISPR-associated-protein-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NC_017192.1\|WP_014474603.1\|1927474_1929655_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_017192.1\|WP_014474594.1\|1919420_1919789_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NC_017192.1\|WP_014474602.1\|1926822_1927311_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_017192.1\|WP_014474592.1\|1916953_1917166_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NC_017192.1\|WP_014474591.1\|1916445_1916943_+\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|377436
NC_017192.1\|WP_014474599.1\|1922642_1923173_+\|hypothetical-protein	unknown	unknown	unknown
NC_017192.1\|WP_014474590.1\|1915317_1916442_+\|tail-sheath-protein	unknown	unknown	gnl\|CDD\|164955
NC_017192.1\|WP_014474601.1\|1925808_1926813_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_017192.1\|WP_014474595.1\|1919785_1919983_+\|hypothetical-protein	unknown	unknown	unknown
NC_017192.1\|WP_014474600.1\|1925500_1925812_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_017192.1\|WP_014474604.1\|1929648_1930371_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_017192.1\|WP_014474598.1\|1921994_1922642_+\|S24-family-peptidase	unknown	unknown	gnl\|CDD\|119397
NC_017192.1\|WP_014474597.1\|1921030_1921813_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NC_017192.1\|WP_014474606.1\|1931678_1933109_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cls000029_cas8b2_CAS-I-B	gnl\|CDD\|187796

Protein	Function_ID	Function_description	E-value
NC_017192.1\|WP_014474605.1\|1930372_1931686_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.10111e-19
NC_017192.1\|WP_014474609.1\|1934571_1935453_-\|membrane-protein	gnl\|CDD\|153122	cd02431, Ferritin_CCC1_C, CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea. .	1.63601e-47
NC_017192.1\|WP_014474593.1\|1917306_1919421_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	7.97615e-64
NC_017192.1\|WP_014474596.1\|1919976_1920921_+\|phage-tail-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	5.31426e-59
NC_017192.1\|WP_014474608.1\|1933721_1934468_-\|CRISPR-associated-protein-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	2.792e-10
NC_017192.1\|WP_014474603.1\|1927474_1929655_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.05224e-62
NC_017192.1\|WP_014474594.1\|1919420_1919789_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	5.96725e-18
NC_017192.1\|WP_014474602.1\|1926822_1927311_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.97399e-59
NC_017192.1\|WP_014474592.1\|1916953_1917166_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	8.81016e-06
NC_017192.1\|WP_014474591.1\|1916445_1916943_+\|phage-major-tail-tube-protein	gnl\|CDD\|377436	pfam04985, Phage_tube, Phage tail tube protein FII. The major structural components of the contractile tail of bacteriophage P2 are proteins FI and FII, which are believed to be the tail sheath and tube proteins, respectively.	2.16602e-32
NC_017192.1\|WP_014474590.1\|1915317_1916442_+\|tail-sheath-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	6.05086e-33
NC_017192.1\|WP_014474601.1\|1925808_1926813_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.07475e-143
NC_017192.1\|WP_014474598.1\|1921994_1922642_+\|S24-family-peptidase	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	6.98403e-17
NC_017192.1\|WP_014474600.1\|1925500_1925812_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.23832e-18
NC_017192.1\|WP_014474604.1\|1929648_1930371_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.56085e-28
NC_017192.1\|WP_014474597.1\|1921030_1921813_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.72038e-37
NC_017192.1\|WP_014474606.1\|1931678_1933109_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.30389e-09

>NC_017192.1|WP_014474599.1|1922642_1923173_+|hypothetical-protein
METSTVDIWNAVGTWISGFGTIGAVITSLWLANNNNKIKLKIKVNSSILIDTFTKEKQEVCHIEIVNICTRNVKINAIGWEIKRGKIKQNFYQKTDGSLSAKLPLTLNEGEDISITLDFKHGDWLKSMAKHLKGYDIKDLKLIVVTNIENFKCNIDNSLVEALKQERKRLADMENN
>NC_017192.1|WP_014474598.1|1921994_1922642_+|S24-family-peptidase
MINFSEILEKIKDILSQEVGNKRVLDKNIATALNINYDNFRKQKARGSIPYYEIMSFLAKRNISINWFFFNQLPESLIENTSNYIILKYQKNIIGSAGAGAINYSINSVPLIIDKQLLNYINSSYKYTEVLQVFGESMEPEIKDGSLIFVDRSKKEIDNKSIYVINTKDGLYIKSIKVNNDKVILKSNNPNFSDVIYNIIDVNVIGKVCGVLIRR
>NC_017192.1|WP_014474597.1|1921030_1921813_+|DNA-adenine-methylase
MHSTKLKAPFGWVGGKTKLAKDIIDFIPQDHNIYIEVFGGAGSVLYQKEPSKLEVFNDINSELINLHRAIRNNPQSLSMYLNDLFISREIFQDIKIRKLKPKNNIEAAAFYFYQLTQSFGSKGDNFAMSAKSGRKPKNIYRDFKKISDRLKGVTIENMSFSKLIPLYDKEDAFFYIDPPYVSTESYYKNTGGFGIKEHEQLAELLSKVKGRFLLSYNDSVVVRELYKDFNIRSTKEIEYTLGKNMHGKNKSVREVFITNY
>NC_017192.1|WP_014474596.1|1919976_1920921_+|phage-tail-protein
MVRVPLFKIVVNGTDKTQNILKDLSSLTVTDYANNNSDQLDIEVSGKYKRPKSSDEIKVYLGYETLQLIGVFKVTETKKSFKKLQITATGVDFKSNFKVKRNRTFENVKIVDIVNQIAAKYDLKVKCDFDDLYIKSVAQTNESDMSFLNRLADEYNAIFNLKNETLYFVKKVKNDKKNELLPRYEIDVNKCLDEVPIIHSEKTFYNSVKVSWHDTKENKRKEIFIPKDAAEPILIYKGNFSSEAEARAKAKAKLEKANQGKVSGSLTCEGEVIYAGGILKLLNIGEDDYEYNITQVRHSFSKSGGWSTSLEFEN
>NC_017192.1|WP_014474595.1|1919785_1919983_+|hypothetical-protein
MTIKVTAKQGDRLDKIVQEKLGTLDNFKEVLELNSSLKNKLYLDENDVVILPIIEKKIKVEDELW
>NC_017192.1|WP_014474594.1|1919420_1919789_+|phage-tail-protein
MLCLIGDFEFDISKTSYDTFATTIEYPFVTFSRIGDYDTYQSVGKSEQKDEISGVLIVKSMRALDDFEKLAAKKEPLTIAFSTGEAYTILIFSIKKTKNLFLKDGSFLKQSYSIELVKVGGV
>NC_017192.1|WP_014474593.1|1917306_1919421_+|phage-tail-tape-measure-protein
MKTVGLGIVIGAAFKGASAFSSAINSTSLLDNKLKKLESQKFQLANKFGATSTEVTKLNTKIIALKNNMTLLEKTKLSFNGIEEYRNKFKSSVMDKVALGGTVAMPFKFAIDFESAMADVKKVVNFATDEEAKRFEQEIIKLSTKKEIPLNANELASIAASGGQLGIAKENLLEFTTTVAKMSTAFDMSAESAGDSIAKLMNVYGLTQNQVVELGDAINHLSDTSASKAREVVEVLGRIGGTAKVFGLTTVQTSALSSAFLALGKPPEVAATSINALLLKLKTADKQNKSFQEGLDAIGLSAKDVKKSIEKDAQGGLISFLKTLEKLPKSKQMGVLSDLFGAEYSDDIALLVGGLDNYTKALENTADRTKYLGSMQREFETRSKTTKNNLVLLGNSVKSIAINFGSLLLPALNSVITPVREIGNKVGDFVTKFPVLSQVIGMVVVGAVALSIGFSAVGYMASFVIAGFLNIGKALLVLNSLFLANPIGLAVVGIVVAATLIYTYWTPIKGFFIGLWDGIKSAFSTGITFVKEYLGWTPLGMIINNWTPITNFFLNLWNGITSIFNSIVSVIAPVFETLALKVKEPFVAVFDWFFEKFQWLETKVLGAINSTKEFFSGAGDKVGSFFKDASSFFTLEGGYKKEIPNLQPVEPVKLDNLNGTNISKNQNVTIQKIEINNPSSTADVEKGVAAGLKTNTTSLSDKEF
>NC_017192.1|WP_014474592.1|1916953_1917166_+|phage-tail-assembly-protein
MSRAIKVKLSTGEVVEGRRAKVKDMKLVNHIKDDMEKEIALIVNLTQKTEAEIDEMDIDDYGKLQKALLL
>NC_017192.1|WP_014474591.1|1916445_1916943_+|phage-major-tail-tube-protein
MAEIKTPQFIQEINIFANGIGHLGVSDEFELPKIQFNRETLNAGGFEIDVKNGTFQKLEAKFVLKQYSKYVIEAMANAENAYFVAKGSVFSDGKAVPAVATIKGDFDLDLGSWKAKEQVKKTIEVKVKYFELEVDGKQFVQLDTKNMIAKIAGKDLLAELRSNIA
>NC_017192.1|WP_014474590.1|1915317_1916442_+|tail-sheath-protein
MELLFGINGSISASAARPVTVESSTPIGIVATVSSGDVGFKKFNNAEEGLTYIKTSNIATGTLKAALTGIYLQGVNCPIVCYLVPENEDAAQLKIDVLAAIGELTKSSYPTGINLRLGLIIAPIFSADVEIGAKIDAIATKLWATGITDDFSEDEAGFKAYMENFGSRCMLHTTAYTKADGLQIPNSAILAGVIARFDAESFGWAKSHSNRLVLGAAGTTREIEYLEGSDCEARRLRQEGACLVLLDEGWRTYGFETRDIDPIWQALDRVRTFYRVLDAIIKANKWARDREADQLLEVKKTVTDFMNELVGNSVAIGFYVYFDPKKNTKATVTAGKFYLTVEFQDMPSIKELNIELVYVDDYSEVLINYLNQGE
>NC_017192.1|WP_014474600.1|1925500_1925812_-|CRISPR-associated-endonuclease-Cas2
MSKDKFNYNYAFLFYDIADEFSEAGKYRVAKVFKICKKYLKHHQKSIFRGNITPSNQLKLETELKKVIDKDLDFISIIKVQNSGSFVEKTLGNDKKEVESIFI
>NC_017192.1|WP_014474601.1|1925808_1926813_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MAKNHTRYIFSMGELKRKDNSIAFRNEKGNFYIPIQDTREVYCINEVSFNTKFLDFISRAGITLHLFNYHGNYSGTFYPKEQLISGDLCIKQALCYVENRLKIAKSIVQAIADNIHETLYHYYRHDKKDLKPTLDWLKSEPKKFLDKDITIEQIMFIEGQIWNKFYDSFKHFLSEDFLMNKRVKRPPDNPMNALVSFGNTLLYTKTISAIYTTHLNQAISFLHSPREGRFSLCLDISEAFKPVIVFKTIFDLVGRKQLQVEKHFDKSLNYALLNEDGKKIFIDAFETRLNETFMHPKLKRKTTYKHCLKLEGYKLIKYIVEGKEFVPFRLKDKM
>NC_017192.1|WP_014474602.1|1926822_1927311_-|CRISPR-associated-protein-Cas4
MITGTLINYYFHCQTQCWLHANRINLEDNSEDVRIGKVLHEINEEKSKQTEISIDNIKIDKITRDYLIEVKKSDSDPQAVKWQVLLYLYKLKQKGVEKKGKIEYIEKRGDKKIEFIELDEVNEKELLEVLTNIENLINQPIPPKPKFENKCKKCAYFEYCFI
>NC_017192.1|WP_014474603.1|1927474_1929655_-|CRISPR-associated-helicase/endonuclease-Cas3
MLAKSDGLSLEQHIQDLLDVSLDFKLAFPLLQIYFDDVDFWDYLNYSILFHDLGKATKGFQSLMQNNKPYRFRHEIISALVAQNYTNDELIINAILAHHKNFEKLKELLNEYENNKKYNQDRWIDKEFEELDLEWVQQFLSEKKFEKKDSLVNNIDENIKKWTSRRARKKISELEKFQNIFLSASLSICDHNASAGIKNIPIIEQNNFNFLYNKKHKPYHHQEVSWREDGNALLIAPTGQGKTESSLGWLQNQLKNRQGRAFYILPFTASINAMTKRVSSVQDGFGNEELVGLLHGKAKFFIDEYYEKKDGQSLKDLLDINKKIIKPFKVVTPFQILKWAFGVKGFEKGFTELAGSYLIFDEIHIYDKELFRRILFFIEWLIDKLHVKVFIMTATMPTFMQNHIKQILNIKNEIRPSKEDIATIQRHKIKLLNFSIDEQKDFIQTKINDGKTVVVVCNTVVKAQEIYASISCDYKTLLHSGFNAKDRTQKEKEVQSKNKPQLLVGTQAIEVSLDIDYDLIVTEPAPLDALLQRFGRVYRSKSRLLQESDEANCYVTTMIEDVHKIIYDNTLIKNTLKVLEKIQNIVINEDMVQDLLDEIYEPFALNEDNLREDFRSLLDNLYPFNVYEESEEKFFEQFDGVEVLPIELFDEFNEYVKDQQYLEAEKLFVSISKNKYKKYRYKKDLIKFVEPHNYGKAFPLIGLKYSCETGLLDEEVTDISNKSMFI
>NC_017192.1|WP_014474604.1|1929648_1930371_-|type-I-B-CRISPR-associated-protein-Cas5
MKLYRVLITAQTASFRYPNFISSNQLSIKAIPYSTIAGLVASATGNDKLIDFKFSYVFRYQSSYVDLETIYKFEKKNNSVNNKNVVQDPTFQREILYDCFLTFYFEDENIANAFKSPIFQLLLGRSGDLARVVEIKEIEVVQSNKALLNGMIVPFNEYKSSGEIYAMPKYFDYKNVVREPRKVQPFLINDGQGSFLEQPRNKIEQFDLKNWKFKKLLNEITTEAYFDGELNSSIILRSLC
>NC_017192.1|WP_014474605.1|1930372_1931686_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSNFQEKIGSDKIKNYFVHSSVLIDVDGASLNNWGKDGTNSQGTDNATAVKKVYKNGRWYAVVAGQAWRYWWREALGLNGWSLSPITRDEKVAYTDVNPIEFPDDDIFGYMRALNENIKDLVEEIEKELKENKKADIDKLSKEKNKVKKEELSNKLLSDVREAILQERKIVDVAKDQNIDIEIIAMIVSKNILKSSTKADDYKIDMSVTRVSPLKNSILTSITPIKLINEFSTMARQEGDAVPYEKQSYSTVLKGMFSLDLDQVGTFTKTNRSGYKNITDITFKQIIENSGSEVDDLINPNIKRARLNNEIRLQRAKDTIIALKTIAGGAKRTTNYASVKPDFIILAVLKGGNNIFDNIAVEEDGRATLSLKALEEAIKDNREYFRSDIYIGKATGFMDEVSNASIEAIKIDGIEITVGSINTMIDEFTKVLDTVVI
>NC_017192.1|WP_014474606.1|1931678_1933109_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MKQESLLDFMTIETPNEKEQVVLDFSQSVGDPLVEIGRLGLIEFCAKDKFESFEEIEEQIKKLFNIYVFKPAKTLNQVFSFNSKFTHNSTSKNLDERFRQAFEQYADLIKESKNGYCLSCGKKDNLCSVSKTILPLTTGNSNANFTSNFSNQFLVCKECMTSLFFAPINMNKTAGRMGFMISNNHEINKFWSEKNIEIFNANIVKKVDSLVDSKINIFENFIYKTIEELQEENLFGDITFYLISNTDKGSEVTLIHVTKNQMNFIHHVAPKFFKDTLPTKDKDEWNYLIFKYSYNERKDDGKKVAFEDEVIKNKDYKSTMKYFNPLIKNFIQGKSILYFLKKNHASWHLTQIYLKEIQGMREERLIVLKKVADRLQELNNGDKEFIRKIVFPLERTKSHSEFREKLRELMRKFLTKSNEPLFTSDEMVFQILPSGESWAETKDILLIALYEKLTLDDDIKEEFEKHITKEGDSEDE
>NC_017192.1|WP_014474607.1|1933105_1933624_-|hypothetical-protein
MITIQEVHWKSKGLFSKNDLHNIMTLVLEQKGFYFDPSDNSFLGAIFKEYVRKFLKEEYITFELSKKELFYYGENVNLYMLNTIYNDFFKDKEPTPFNAIIEDKEDGAMNLGIFNLPFASQLKNLIEILEKLEIDFKKLSEDYMLLGFSNSMECNKAKDVIDLDYKLWEERG
>NC_017192.1|WP_014474608.1|1933721_1934468_-|CRISPR-associated-protein-Cas6
MKIFELKCITYLKQDVSFEDSFDSISKFINYSICQKDEYKQKHNQNVFNNYCFGSFFPIEKDKLYKKGNTYYFTFRTIDEKFAKELSNLLRANINNPYLQIVQVEKRDIKQFFISEIYSATPVVVSLKKENEKSHQLFWTLEKSGDIIELQKQLQENLIKKYEEFFGEKLKVSQNFIQLFEIKNHKPQSVCFTTTKNEMQKKIRLIGNKFRIIPNEDEISQKLAFLSLGVGLGEKSSYGGGFMIWKRQ
>NC_017192.1|WP_014474609.1|1934571_1935453_-|membrane-protein
MDTSFDKKNLKKALLQQQNEINDYTIYKALALFQKDENNKKIFEKIAKEEKSHYDFWVKITKKQLHAQNLIVWWYVFLVKIFGTSFTLKSLEKRESGAEEFYKELFEIYPESKKIYEQETQHELELIDMLNDKKLLYAGAIVLGMNDALVELTGTLSGIAFAFDKSLVVGLTGLIMGIAASLSMAGSAYFEAKENPSEEINPLVYSLYTGVSYILTTAILVVPFFIFDSIIEALILMFVCAFLAIVSYNFYISVAKDLSFIKRVLQMSAITFGVAIISFLIGYLVKYYFGIEI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	142066-142099	7	0.794
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	143651-143684	7	0.794
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MH078572	Staphylococcus phage phiSA_BS1, complete genome	97937-97970	7	0.794
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP007649	Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence	6336-6369	7	0.794
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	126602-126635	7	0.794
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	KY779848	Staphylococcus phage qdsa001, complete genome	22182-22215	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	KX532239	Staphylococcus phage StAP1, complete genome	3423-3456	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	JX194239	Staphylococcus phage SA11, complete genome	131556-131589	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MT074146	Bacteroides phage SJC03, complete genome	140634-140667	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	AP019522	Staphylococcal phage MR003 DNA, complete genome	28728-28761	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MT080595	UNVERIFIED: Staphylococcus phage vB_SauM_EW41, partial genome	113960-113993	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MH572523	Microviridae sp. isolate SD_HF_35, complete genome	3084-3117	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	KJ801817	Enterococcus phage ECP3, complete genome	138590-138623	8	0.765
NC_017192_3	3.31\|1925272\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1925272-1925305	34	MK542647	Poxviridae sp. strain 1000-15 RNA polymerase subunit RPO132 gene, complete cds	2213-2246	8	0.765
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009055	Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence	29547-29580	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	AP013459	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C21	34151-34184	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP031209	Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence	28230-28263	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_017242	Brachyspira intermedia PWS/A plasmid pInt, complete sequence	1383-1416	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	AP014378	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C22, * SEQUENCING IN PROGRESS *	1670-1703	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP053843	Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence	36499-36532	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	KJ868088	Lactobacillus pentosus strain F03 plasmid pF03-1, complete sequence	772-805	9	0.735
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_MH465666	Staphylococcus aureus strain Sau-392Lar plasmid pSau-392Lar, complete sequence	2261-2294	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_KT186230	Bacillus anthracis strain P.NO2 plasmid pXO1, complete sequence	89399-89432	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_014331	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence	89617-89650	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP022045	Bacillus anthracis strain FDAARGOS_341 plasmid unnamed1, complete sequence	26230-26263	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_007322	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence	89321-89354	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_012579	Bacillus anthracis str. CDC 684 plasmid pX01, complete sequence	89641-89674	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP015777	Bacillus anthracis strain Tangail-1 plasmid pXO1, complete sequence	89321-89354	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP018904	Bacillus anthracis strain Tyrol 4675 plasmid pXO1, complete sequence	89696-89729	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP023002	Bacillus anthracis strain 14RA5914 plasmid pX01, complete sequence	116669-116702	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_AP019732	Bacillus anthracis strain PCr plasmid PCr-pXO1	111012-111045	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_AP018444	Bacillus anthracis strain CZC5 plasmid pXO1, complete sequence	89406-89439	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	230025-230058	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP029324	Bacillus anthracis strain 17OD930 plasmid pXO1, complete sequence	134460-134493	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_012656	Bacillus anthracis str. A0248 plasmid pXO1, complete sequence	89585-89618	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_010934	Bacillus cereus strain G9241 plasmid pBCXO1, complete sequence	147421-147454	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP019589	Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence	89321-89354	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP010853	Bacillus anthracis strain A1144 plasmid pXO1, complete sequence	89302-89335	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP007665	Bacillus anthracis str. Vollum plasmid unnamed, complete sequence	112587-112620	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP008847	Bacillus anthracis strain HYU01 plasmid pX01, complete sequence	89664-89697	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP006743	Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence	89574-89607	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_AP014834	Bacillus anthracis strain Shikan-NIID plasmid pXO1	89405-89438	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP029806	Bacillus anthracis strain London_499 plasmid pX01, complete sequence	88308-88341	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_001496	Bacillus anthracis virulence plasmid PX01, complete sequence	89271-89304	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_017726	Bacillus anthracis str. H9401 plasmid BAP1, complete sequence	89374-89407	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP014177	Bacillus anthracis strain Stendal plasmid pXO1, complete sequence	89321-89354	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009597	Bacillus anthracis str. V770-NP-1R plasmid pXO1, complete sequence	63003-63036	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009901	Bacillus anthracis strain 2002013094 plasmid pXO1, complete sequence	60504-60537	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009340	Bacillus anthracis strain Ohio ACB plasmid 1, complete sequence	169359-169392	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009696	Bacillus anthracis strain RA3 plasmid pXO1, complete sequence	107544-107577	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009463	Bacillus anthracis strain SK-102 plasmid pXO1, complete sequence	153657-153690	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009699	Bacillus anthracis strain BA1035 plasmid pXO1, complete sequence	116445-116478	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009592	Bacillus cereus G9241 plasmid pBCX01, complete sequence	28791-28824	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009543	Bacillus anthracis strain BA1015 plasmid pXO1, complete sequence	175922-175955	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP010321	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 1, complete sequence	157509-157542	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009540	Bacillus anthracis str. Sterne plasmid pXO1, complete sequence	86099-86132	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009330	Bacillus anthracis strain K3 plasmid 1, complete sequence	127197-127230	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009324	Bacillus anthracis strain PAK-1 plasmid 1, complete sequence	110730-110763	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009327	Bacillus anthracis strain Vollum 1B plasmid 1, complete sequence	133135-133168	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP001975	Bacillus anthracis str. A16R plasmid pXO1, complete sequence	89406-89439	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP009980	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed1, complete sequence	18413-18446	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP001971	Bacillus anthracis str. A16 plasmid pXO1, complete sequence	89406-89439	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP047132	Bacillus anthracis str. BF1 plasmid pXO1, complete sequence	133580-133613	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MF974396	Leptospira phage LE3, complete genome	45667-45700	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MN693370	Marine virus AFVG_25M236, complete genome	23484-23517	10	0.706
NC_017192_3	3.13\|1924095\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1924095-1924128	34	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	100703-100736	10	0.706
NC_017192_3	3.13\|1924095\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1924095-1924128	34	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	323073-323106	10	0.706
NC_017192_3	3.27\|1925013\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1925013-1925046	34	MN693034	Marine virus AFVG_117M74, complete genome	79510-79543	10	0.706
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_KR870312	Staphylococcus aureus strain SA0409 plasmid pHSSA0409, complete sequence	1885-1918	11	0.676
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MF101921	Staphylococcus aureus strain MRSA127_15 plasmid pMRSA127_15, complete sequence	1868-1901	11	0.676
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NC_007169	Staphylococcus haemolyticus JCSC1435 plasmid pSHaeA, complete sequence	1906-1939	11	0.676
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	NZ_CP042424	Swingsia sp. F3b2 plasmid unnamed2, complete sequence	5617-5650	11	0.676
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MN693233	Marine virus AFVG_25M109, complete genome	15609-15642	11	0.676
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MN693150	Marine virus AFVG_25M172, complete genome	15505-15538	11	0.676
NC_017192_3	3.4\|1923509\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1923509-1923542	34	MN693485	Marine virus AFVG_25M173, complete genome	15509-15542	11	0.676
NC_017192_3	3.13\|1924095\|34\|NC_017192\|PILER-CR,CRISPRCasFinder,CRT	1924095-1924128	34	MK554696	Fusobacterium phage Fnu1, complete genome	108938-108971	11	0.676

1. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 7, identity: 0.794

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ttattttattttgtttttcttttattttgttttt	Protospacer
******************** ** ***. ** ..

2. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 7, identity: 0.794

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ttattttattttgtttttcttttattttgttttt	Protospacer
******************** ** ***. ** ..

3. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 7, identity: 0.794

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ttattttattttgtttttcttttattttgttttt	Protospacer
******************** ** ***. ** ..

4. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007649 (Lactobacillus salivarius strain JCM1046 plasmid pLMP1046, complete sequence) position: , mismatch: 7, identity: 0.794

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
gtgtattattttctttttctgctttttctttcca	Protospacer
 *.* ******* ********.********* *

5. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 7, identity: 0.794

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
tttctcaatattgtttttctgttttttctttact	Protospacer
** .*. ** *********************.*.

6. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to KY779848 (Staphylococcus phage qdsa001, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cttttttaatttgtttttctgtttttttatttgt	Protospacer
.* ***** ******************. **  .

7. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to KX532239 (Staphylococcus phage StAP1, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cttttttaatttgtttttctgtttttttatttgt	Protospacer
.* ***** ******************. **  .

8. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to JX194239 (Staphylococcus phage SA11, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cttttttaatttgtttttctgtttttttatttgt	Protospacer
.* ***** ******************. **  .

9. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
tagattcattttgtttatctgttttttcttctac	Protospacer
* . **.********* *************.  *

10. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to AP019522 (Staphylococcal phage MR003 DNA, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cttttttaatttgtttttctgtttttttatttgt	Protospacer
.* ***** ******************. **  .

11. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MT080595 (UNVERIFIED: Staphylococcus phage vB_SauM_EW41, partial genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cttttttaatttgtttttctgtttttttatttgt	Protospacer
.* ***** ******************. **  .

12. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MH572523 (Microviridae sp. isolate SD_HF_35, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
taatttttttttgtttttttgttttttttgacac	Protospacer
* ***** **********.********.*    *

13. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to KJ801817 (Enterococcus phage ECP3, complete genome) position: , mismatch: 8, identity: 0.765

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
taaatttcttttgtttttctattttttctactcg	Protospacer
* * *** ************.******** . *

14. spacer 3.31|1925272|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MK542647 (Poxviridae sp. strain 1000-15 RNA polymerase subunit RPO132 gene, complete cds) position: , mismatch: 8, identity: 0.765

taaatggatataaagaaataaacaaagaagagtg	CRISPR spacer
taatgtcatataaaggaataaaccaagaagatgg	Protospacer
***    ********.******* *******  *

15. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009055 (Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
agtttttattttttttttctgttttttccactct	Protospacer
   ********* ***************. . *.

16. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to AP013459 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C21) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cctttttaatttgtttatctgttttttcttctaa	Protospacer
.. ***** ******* *************.

17. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031209 (Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
gtatttgattttgtttttctgctttttgggcttc	Protospacer
 ***** **************.*****   . .*

18. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_017242 (Brachyspira intermedia PWS/A plasmid pInt, complete sequence) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
taattatattttgtttttctgtttttctcattga	Protospacer
* *** ********************... *

19. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to AP014378 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C22, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
atgcatttttttgtttttctgctttttcttctgc	Protospacer
 *.. ** *************.********.  *

20. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053843 (Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
tgtttttatttttattttctgtttttttagtatc	Protospacer
*  *********  *************.  *..*

21. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to KJ868088 (Lactobacillus pentosus strain F03 plasmid pF03-1, complete sequence) position: , mismatch: 9, identity: 0.735

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
tggtttttttttgtttttcttttttttttacgta	Protospacer
* .**** ************ ******.* .*.

22. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH465666 (Staphylococcus aureus strain Sau-392Lar plasmid pSau-392Lar, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
aatttttattttgtttttctgatttttaaattta	Protospacer
   ****************** *****   * .

23. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT186230 (Bacillus anthracis strain P.NO2 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

24. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_014331 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

25. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022045 (Bacillus anthracis strain FDAARGOS_341 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

26. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_007322 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

27. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_012579 (Bacillus anthracis str. CDC 684 plasmid pX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

28. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015777 (Bacillus anthracis strain Tangail-1 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

29. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018904 (Bacillus anthracis strain Tyrol 4675 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

30. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023002 (Bacillus anthracis strain 14RA5914 plasmid pX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

31. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019732 (Bacillus anthracis strain PCr plasmid PCr-pXO1) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

32. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018444 (Bacillus anthracis strain CZC5 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

33. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ttatattattttgtttttcttttttcgtatctat	Protospacer
**** *************** ****. . *.  .

34. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029324 (Bacillus anthracis strain 17OD930 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

35. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_012656 (Bacillus anthracis str. A0248 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

36. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_010934 (Bacillus cereus strain G9241 plasmid pBCXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

37. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019589 (Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

38. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010853 (Bacillus anthracis strain A1144 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

39. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007665 (Bacillus anthracis str. Vollum plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

40. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008847 (Bacillus anthracis strain HYU01 plasmid pX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

41. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006743 (Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

42. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014834 (Bacillus anthracis strain Shikan-NIID plasmid pXO1) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

43. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029806 (Bacillus anthracis strain London_499 plasmid pX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

44. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_001496 (Bacillus anthracis virulence plasmid PX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

45. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_017726 (Bacillus anthracis str. H9401 plasmid BAP1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

46. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014177 (Bacillus anthracis strain Stendal plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

47. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009597 (Bacillus anthracis str. V770-NP-1R plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

48. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009901 (Bacillus anthracis strain 2002013094 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

49. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009340 (Bacillus anthracis strain Ohio ACB plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

50. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009696 (Bacillus anthracis strain RA3 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

51. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009463 (Bacillus anthracis strain SK-102 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

52. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009699 (Bacillus anthracis strain BA1035 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

53. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009592 (Bacillus cereus G9241 plasmid pBCX01, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

54. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009543 (Bacillus anthracis strain BA1015 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

55. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010321 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

56. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009540 (Bacillus anthracis str. Sterne plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

57. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009330 (Bacillus anthracis strain K3 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

58. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009324 (Bacillus anthracis strain PAK-1 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

59. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009327 (Bacillus anthracis strain Vollum 1B plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

60. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP001975 (Bacillus anthracis str. A16R plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

61. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009980 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

62. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP001971 (Bacillus anthracis str. A16 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

63. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047132 (Bacillus anthracis str. BF1 plasmid pXO1, complete sequence) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
ccccattatttgatttttctgttttttcttccgc	Protospacer
.. . ****** .*****************.  *

64. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MF974396 (Leptospira phage LE3, complete genome) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cgtcttctttttctttttctgttttttctgtgag	Protospacer
.  .**. **** **************** **

65. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MN693370 (Marine virus AFVG_25M236, complete genome) position: , mismatch: 10, identity: 0.706

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
tagattttttttgtttgtctgttttttcatgctt	Protospacer
* . *** ******** *********** *  ..

66. spacer 3.13|1924095|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

atagtgctttactaaaattttcacttactccctt	CRISPR spacer
cacgcccttttctaaaatgttcacttactctatg	Protospacer
   *. **** ******* ***********. *

67. spacer 3.13|1924095|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

atagtgctttactaaaattttcacttactccctt	CRISPR spacer
cacgcccttttctaaaatgttcacttactctatg	Protospacer
   *. **** ******* ***********. *

68. spacer 3.27|1925013|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MN693034 (Marine virus AFVG_117M74, complete genome) position: , mismatch: 10, identity: 0.706

agtatcaaatctgatacttattttttatttatac	CRISPR spacer
cattcagaatctgattcttattttttatatacaa	Protospacer
 .* . .******** ************ **.*

69. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KR870312 (Staphylococcus aureus strain SA0409 plasmid pHSSA0409, complete sequence) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
aatttttgttttgtttttctgatttttaaattta	Protospacer
   ****.************* *****   * .

70. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MF101921 (Staphylococcus aureus strain MRSA127_15 plasmid pMRSA127_15, complete sequence) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
aatttttgttttgtttttctgatttttaaattta	Protospacer
   ****.************* *****   * .

71. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NC_007169 (Staphylococcus haemolyticus JCSC1435 plasmid pSHaeA, complete sequence) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
aatttttgttttgtttttctgatttttaaattta	Protospacer
   ****.************* *****   * .

72. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042424 (Swingsia sp. F3b2 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
aacttttattatatttttctgttttttgtgaaga	Protospacer
   ******* *.************** *  .

73. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MN693233 (Marine virus AFVG_25M109, complete genome) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cccaccttttttctttttcttttttttctttgat	Protospacer
..  ..* **** ******* *********** .

74. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MN693150 (Marine virus AFVG_25M172, complete genome) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cccaccttttttctttttcttttttttctttgat	Protospacer
..  ..* **** ******* *********** .

75. spacer 3.4|1923509|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MN693485 (Marine virus AFVG_25M173, complete genome) position: , mismatch: 11, identity: 0.676

ttattttattttgtttttctgttttttctttgcc	CRISPR spacer
cccaccttttttctttttcttttttttctttgat	Protospacer
..  ..* **** ******* *********** .

76. spacer 3.13|1924095|34|NC_017192|PILER-CR,CRISPRCasFinder,CRT matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 11, identity: 0.676

atagtgctttactaaaattttcacttactccctt	CRISPR spacer
cctactctttactaaatttttcacatactcttgt	Protospacer
 . .. ********** ******* *****.. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62613 : 70348

uncultured_Caudovirales_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014472791.1\|62613_63876_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-08	59.6
WP_050989837.1\|63884_64277_-	PAS sensor domain-containing protein	A0A1B0V854	Salmonella_phage	2.7e-28	48.0
WP_014472793.1\|64496_65393_-	RNA pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.0e-06	27.1
WP_014472794.1\|65541_66870_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.7e-19	29.9
WP_014472795.1\|66884_69269_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P767	Pseudomonas_phage	1.6e-142	39.5
WP_014472796.1\|69328_70348_+	ribonucleotide-diphosphate reductase subunit beta	U5Q1G6	Bacillus_phage	2.1e-48	32.1

DBSCAN-SWA_2

884924 : 962954

Shigella_phage(20.0%)

transposase,integrase

attL 940352:940370|attR 972751:972769

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014473586.1\|884924_885377_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-36	52.1
WP_014473587.1\|885358_885664_-\|transposase	transposase	NA	NA	NA	NA
WP_014473588.1\|886015_887014_+	hypothetical protein	NA	NA	NA	NA
WP_014473587.1\|887403_887709_+\|transposase	transposase	NA	NA	NA	NA
WP_014473586.1\|887690_888143_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-36	52.1
WP_014473589.1\|888266_888950_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.6e-07	27.8
WP_014473590.1\|889008_890574_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_014473591.1\|890717_904148_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_014473592.1\|905421_906675_+	hypothetical protein	NA	NA	NA	NA
WP_014473593.1\|906674_908384_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_014473594.1\|909887_910502_+	hypothetical protein	NA	NA	NA	NA
WP_014473595.1\|910494_911475_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_014473596.1\|911471_916280_-	RecQ family ATP-dependent DNA helicase	A0A1V0SGM9	Hokovirus	4.1e-33	28.0
WP_014473597.1\|916287_917733_-	dGTPase	NA	NA	NA	NA
WP_014473598.1\|917758_919234_-	hypothetical protein	NA	NA	NA	NA
WP_014473599.1\|919235_922019_-	AAA family ATPase	A0A076FFX0	Aureococcus_anophage	2.5e-06	23.1
WP_014473600.1\|922020_923508_-	DUF2779 domain-containing protein	NA	NA	NA	NA
WP_014473601.1\|923494_925729_-	hypothetical protein	NA	NA	NA	NA
WP_041654678.1\|925770_926718_-	hypothetical protein	NA	NA	NA	NA
WP_014473603.1\|926704_927547_-	hypothetical protein	NA	NA	NA	NA
WP_014473604.1\|927546_929721_-	AAA family ATPase	NA	NA	NA	NA
WP_014473605.1\|929731_930025_-	hypothetical protein	NA	NA	NA	NA
WP_014473606.1\|930037_933619_-	AAA family ATPase	G3MAB6	Bacillus_virus	1.2e-08	26.5
WP_014473607.1\|933615_934809_-	exonuclease SbcCD subunit D C-terminal domain-containing protein	NA	NA	NA	NA
WP_014473608.1\|935050_935608_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.4e-38	46.9
WP_014473609.1\|935620_936103_-	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_158310003.1\|936099_937692_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_102043428.1\|937786_938227_-	YegP family protein	NA	NA	NA	NA
WP_014473612.1\|938450_939506_+	helix-turn-helix domain-containing protein	Q9G094	Leptospira_phage	1.8e-05	31.4
WP_014473613.1\|939507_940011_+	PIN domain-containing protein	NA	NA	NA	NA
WP_014473614.1\|940012_940711_+	hypothetical protein	NA	NA	NA	NA
940352:940370	attL	NA	NA	NA	NA
WP_014473616.1\|941288_941528_-	hypothetical protein	NA	NA	NA	NA
WP_014473617.1\|941880_942171_+	hypothetical protein	NA	NA	NA	NA
WP_014473618.1\|942187_942451_+	hypothetical protein	NA	NA	NA	NA
WP_014473619.1\|942447_942738_+	hypothetical protein	NA	NA	NA	NA
WP_014473620.1\|943001_943202_+	hypothetical protein	NA	NA	NA	NA
WP_014473621.1\|943203_943410_+	hypothetical protein	NA	NA	NA	NA
WP_014473622.1\|943535_943847_-	hypothetical protein	NA	NA	NA	NA
WP_014473623.1\|943908_944580_-	hypothetical protein	NA	NA	NA	NA
WP_014473624.1\|944729_944984_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014473625.1\|944993_945413_-	hypothetical protein	NA	NA	NA	NA
WP_014473626.1\|946060_946993_+	hypothetical protein	NA	NA	NA	NA
WP_014473627.1\|947058_948273_+	ATP-binding protein	NA	NA	NA	NA
WP_014473628.1\|948283_948676_-	hypothetical protein	NA	NA	NA	NA
WP_014473629.1\|948677_949181_-	hypothetical protein	NA	NA	NA	NA
WP_014473630.1\|949188_949812_-	hypothetical protein	NA	NA	NA	NA
WP_014473631.1\|949823_950117_-	hypothetical protein	NA	NA	NA	NA
WP_014473632.1\|950207_951293_-	hypothetical protein	NA	NA	NA	NA
WP_014473633.1\|951289_952405_-\|integrase	site-specific integrase	A0A067ZJC0	Vibrio_phage	6.4e-38	31.5
WP_014473634.1\|952557_953661_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_041654682.1\|953730_954552_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_014473636.1\|954569_955184_-	recombination protein RecO	NA	NA	NA	NA
WP_014473637.1\|955192_955456_-	hypothetical protein	NA	NA	NA	NA
WP_014473638.1\|955573_955891_+	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_014473639.1\|955942_957040_-	nitrous oxide reductase accessory protein NosL	NA	NA	NA	NA
WP_014473640.1\|957209_961502_+	hypothetical protein	NA	NA	NA	NA
WP_014473641.1\|961808_962954_+\|integrase	site-specific integrase	A0A067ZJC0	Vibrio_phage	4.3e-29	29.7
972751:972769	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1199189 : 1206626

Salicola_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014473882.1\|1199189_1200572_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	1.8e-103	42.2
WP_014473883.1\|1200640_1201519_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	9.2e-08	29.5
WP_014473884.1\|1201616_1202624_+	AAA family ATPase	G3MAU6	Bacillus_virus	1.5e-54	40.4
WP_041654726.1\|1202586_1203792_+	hypothetical protein	A0A248SJN2	Salicola_phage	1.6e-23	26.0
WP_014473885.1\|1203763_1204465_+	hypothetical protein	NA	NA	NA	NA
WP_014473886.1\|1204508_1204934_+	arsenate reductase family protein	NA	NA	NA	NA
WP_041654727.1\|1204918_1205218_+	hypothetical protein	NA	NA	NA	NA
WP_014473887.1\|1205230_1205710_+	transcription elongation factor GreA	A0A248SJQ8	Salicola_phage	1.2e-09	26.8
WP_041655110.1\|1205711_1206626_+	class I SAM-dependent methyltransferase	W6LLI2	Streptococcus_phage	5.6e-16	31.4

DBSCAN-SWA_4

1877381 : 1941704

Vibrio_phage(15.79%)

capsid,transposase,plate,integrase,tail,tRNA,protease

attL 1881150:1881168|attR 1911864:1911882

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014474540.1\|1877381_1878854_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_014474541.1\|1878981_1879173_+	hypothetical protein	NA	NA	NA	NA
WP_014474542.1\|1879183_1879438_+	hypothetical protein	NA	NA	NA	NA
WP_014474543.1\|1879469_1880924_-	potassium/proton antiporter	NA	NA	NA	NA
WP_014474544.1\|1881028_1882525_-	DUF1538 domain-containing protein	NA	NA	NA	NA
1881150:1881168	attL	NA	NA	NA	NA
WP_014474545.1\|1882528_1882915_-	CBS domain-containing protein	NA	NA	NA	NA
WP_014474546.1\|1882924_1883275_-	hypothetical protein	NA	NA	NA	NA
WP_014474547.1\|1883271_1884117_-	universal stress protein	NA	NA	NA	NA
WP_014474548.1\|1884293_1884692_+	DUF3010 family protein	NA	NA	NA	NA
WP_014474549.1\|1884726_1885143_-	hypothetical protein	NA	NA	NA	NA
WP_014474550.1\|1885456_1887703_-	carbamoyltransferase HypF	NA	NA	NA	NA
WP_014474551.1\|1888178_1889192_-	hypothetical protein	NA	NA	NA	NA
WP_014474552.1\|1889204_1889891_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	1.2e-05	24.6
WP_014474553.1\|1890029_1890410_+	hypothetical protein	NA	NA	NA	NA
WP_014474554.1\|1890900_1891488_-	hypothetical protein	NA	NA	NA	NA
WP_014474555.1\|1891623_1891806_+	hypothetical protein	NA	NA	NA	NA
WP_014474556.1\|1891802_1892105_+	hypothetical protein	NA	NA	NA	NA
WP_014474557.1\|1892106_1894215_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	8.6e-44	33.2
WP_014474558.1\|1894214_1894913_+	ATP-binding protein	NA	NA	NA	NA
WP_014474559.1\|1894912_1895413_+	hypothetical protein	NA	NA	NA	NA
WP_014474560.1\|1895534_1895780_+	hypothetical protein	NA	NA	NA	NA
WP_014474561.1\|1895842_1896685_+	DUF3164 family protein	NA	NA	NA	NA
WP_014474562.1\|1896684_1897251_+	N-acetylmuramoyl-L-alanine amidase	A0A2I7RHK5	Vibrio_phage	3.7e-34	45.1
WP_158310010.1\|1897307_1897484_+	hypothetical protein	NA	NA	NA	NA
WP_014474563.1\|1897483_1897819_+	hypothetical protein	NA	NA	NA	NA
WP_014474564.1\|1897946_1898273_+	hypothetical protein	NA	NA	NA	NA
WP_014474565.1\|1898471_1898627_+	hypothetical protein	NA	NA	NA	NA
WP_014474566.1\|1898680_1898878_+	hypothetical protein	NA	NA	NA	NA
WP_014474567.1\|1898953_1899181_+	hypothetical protein	NA	NA	NA	NA
WP_014474568.1\|1899180_1900083_+	AAA family ATPase	NA	NA	NA	NA
WP_014474569.1\|1900177_1900564_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_014474570.1\|1900592_1900814_+	hypothetical protein	NA	NA	NA	NA
WP_014474571.1\|1900926_1901205_+	hypothetical protein	NA	NA	NA	NA
WP_014474572.1\|1901196_1901688_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	1.0e-08	30.9
WP_014474573.1\|1901778_1902948_-\|capsid	minor capsid protein	Q6QIB9	Burkholderia_phage	7.1e-40	43.3
WP_014474574.1\|1902940_1904392_-	DUF935 family protein	M4M9P3	Vibrio_phage	2.1e-09	21.8
WP_014474575.1\|1904391_1906128_-	hypothetical protein	A0A0A1IW02	Pseudomonas_phage	1.2e-72	35.1
WP_014474576.1\|1906114_1906621_-	DUF1804 family protein	NA	NA	NA	NA
WP_014474577.1\|1906620_1907028_-	DUF1320 family protein	NA	NA	NA	NA
WP_014474578.1\|1907150_1908125_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_014474579.1\|1908134_1908605_-	hypothetical protein	NA	NA	NA	NA
WP_102043436.1\|1908597_1909263_-	hypothetical protein	A0A0M3LPA7	Mannheimia_phage	9.1e-08	32.1
WP_014474581.1\|1909396_1909834_-	hypothetical protein	NA	NA	NA	NA
WP_014474582.1\|1909987_1910329_+	hypothetical protein	NA	NA	NA	NA
WP_014474583.1\|1910321_1910870_+	hypothetical protein	NA	NA	NA	NA
WP_014474584.1\|1910869_1911520_+\|plate	phage baseplate assembly protein V	D4HTV0	Vibrio_phage	7.5e-07	35.5
WP_041654826.1\|1911521_1911806_+	GPW/gp25 family protein	E5E3R0	Burkholderia_phage	8.1e-06	40.5
WP_014474586.1\|1911802_1912909_+\|plate	baseplate J/gp47 family protein	A0A088FQL4	Escherichia_phage	4.9e-06	35.1
1911864:1911882	attR	NA	NA	NA	NA
WP_014474587.1\|1912877_1913426_+\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	3.1e-09	33.3
WP_014474588.1\|1913422_1914958_+\|tail	phage tail protein	D5GVU2	Campylobacter_virus	1.1e-16	52.9
WP_014474589.1\|1914969_1915302_+	hypothetical protein	NA	NA	NA	NA
WP_014474590.1\|1915317_1916442_+\|tail	tail sheath protein	A7YGJ8	Campylobacter_phage	5.6e-42	29.8
WP_014474591.1\|1916445_1916943_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_014474592.1\|1916953_1917166_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_014474593.1\|1917306_1919421_+\|tail	phage tail tape measure protein	A0A1B2LRQ0	Wolbachia_phage	1.9e-91	41.5
WP_014474594.1\|1919420_1919789_+\|tail	phage tail protein	NA	NA	NA	NA
WP_014474595.1\|1919785_1919983_+	hypothetical protein	NA	NA	NA	NA
WP_014474596.1\|1919976_1920921_+\|tail	phage tail protein	E5G6Q3	Salmonella_phage	6.2e-18	32.9
WP_014474597.1\|1921030_1921813_+	DNA adenine methylase	A7YGL3	Campylobacter_phage	2.4e-76	57.6
WP_014474598.1\|1921994_1922642_+	S24 family peptidase	A7YG70	Campylobacter_phage	1.0e-16	48.7
WP_014474599.1\|1922642_1923173_+	hypothetical protein	NA	NA	NA	NA
WP_014474600.1\|1925500_1925812_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_014474601.1\|1925808_1926813_-	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_014474602.1\|1926822_1927311_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_014474603.1\|1927474_1929655_-	CRISPR-associated helicase/endonuclease Cas3	A0A2R2ZGW0	Clostridioides_phage	9.9e-19	22.4
WP_014474604.1\|1929648_1930371_-	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_014474605.1\|1930372_1931686_-	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_014474606.1\|1931678_1933109_-	type I-B CRISPR-associated protein Cas8b1/Cst1	NA	NA	NA	NA
WP_014474607.1\|1933105_1933624_-	hypothetical protein	NA	NA	NA	NA
WP_014474608.1\|1933721_1934468_-	CRISPR-associated protein Cas6	NA	NA	NA	NA
WP_014474609.1\|1934571_1935453_-	membrane protein	NA	NA	NA	NA
WP_014474610.1\|1935602_1937975_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_014474611.1\|1938074_1939040_-	FecR domain-containing protein	NA	NA	NA	NA
WP_014474612.1\|1939041_1939518_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014474613.1\|1939597_1941130_-	hypothetical protein	NA	NA	NA	NA
WP_014474614.1\|1941113_1941704_-\|protease	hydrogenase maturation protease	NA	NA	NA	NA

DBSCAN-SWA_5

2627624 : 2634591

Campylobacter_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014475237.1\|2627624_2628311_+	7-cyano-7-deazaguanine synthase QueC	R4TAI3	Halovirus	8.2e-28	34.5
WP_014475238.1\|2628310_2628844_+	6-carboxytetrahydropterin synthase	D5GVR0	Campylobacter_virus	2.0e-45	51.4
WP_014475239.1\|2628836_2629601_+	7-carboxy-7-deazaguanine synthase QueE	D5GV09	Campylobacter_virus	8.5e-50	42.1
WP_014475240.1\|2629669_2630413_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	3.2e-17	30.2
WP_004510944.1\|2630506_2630737_+	acyl carrier protein	M4QDG5	Prochlorococcus_phage	5.4e-08	66.0
WP_014475241.1\|2630843_2632103_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_014475242.1\|2632169_2633111_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_014475243.1\|2633123_2633468_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_014475244.1\|2633598_2634591_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	3.2e-33	35.3

DBSCAN-SWA_6

2673420 : 2683824

Bacillus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014475284.1\|2673420_2675475_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	4.5e-106	37.3
WP_014475285.1\|2675590_2676487_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014475286.1\|2676513_2677476_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.7e-13	32.5
WP_014475287.1\|2677475_2678822_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-54	33.9
WP_014475288.1\|2678834_2679608_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_014475289.1\|2679622_2680552_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	3.2e-59	43.3
WP_014475290.1\|2680768_2681086_-	thioredoxin	A0A0K2FIM3	Achromobacter_phage	1.2e-13	38.6
WP_014475291.1\|2681268_2683824_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.4e-75	36.5

DBSCAN-SWA_7

2893816 : 2905773

Organic_Lake_phycodnavirus(10.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014475497.1\|2893816_2895052_+	DNA (cytosine-5-)-methyltransferase	F2Y148	Organic_Lake_phycodnavirus	2.4e-78	47.0
WP_014475498.1\|2895059_2896298_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	8.4e-07	32.7
WP_014475499.1\|2896408_2897410_+	AAA family ATPase	H6WG28	Cyanophage	3.4e-59	42.0
WP_014475500.1\|2897413_2898544_+	hypothetical protein	A0A2I7SAP6	Vibrio_phage	1.5e-23	23.8
WP_014475501.1\|2898551_2899232_-	metallophosphoesterase	A0A0F6WBP4	Sinorhizobium_phage	1.8e-11	28.1
WP_014475502.1\|2899246_2899561_-	cupin domain-containing protein	NA	NA	NA	NA
WP_014475503.1\|2899774_2901043_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	A0A0B5JD48	Pandoravirus	4.4e-11	25.1
WP_014475504.1\|2901045_2901459_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_014475505.1\|2901469_2902402_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	6.6e-81	53.7
WP_041654950.1\|2902443_2902674_+	DUF2061 domain-containing protein	A0A1B0XTK5	Freshwater_phage	2.0e-07	40.3
WP_014475507.1\|2902682_2903387_+	phosphoadenylyl-sulfate reductase	M4W6M9	Bacillus_phage	2.2e-07	33.3
WP_014475508.1\|2903399_2904314_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_014475509.1\|2904315_2905773_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	9.9e-31	26.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017192

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection