CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017082	Bradyrhizobium cosmicum, complete genome	2 crisprs	csa3,WYL,cas3	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017082_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017082_1

1711763-1711865

Orphan

Consensus_repeat	Method
TCCCCCGGTCTATTCGGCCGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017082_1

>merge|NC_017082|1|1711763-1711865|CRISPRCasFinder
TCCCCCGGTCTATTCGGCCGCCCCGCCGCAGGGCCCGGTGATGTCTCCGGATGATCCGCGTTACGGCCGCCCGGCTGGTCCCCCGGTCTATTCGGCGGCCCCG

>NC_017082|1|1|1711763-1711865|CRISPRCasFinder
TCCCCCGGTCTATTCGGCCGCCCCG	CCGCAGGGCCCGGTGATGTCTCCGGATGATCCGCGTTACGGCCGCCCGGCTGG
TCCCCCGGTCTATTCGGCGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017082.1\|WP_015684162.1\|1706406_1707249_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_017082.1\|WP_015684166.1\|1709561_1710416_+\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_017082.1\|WP_015684170.1\|1713866_1714082_-\|hypothetical-protein	unknown	unknown	unknown
NC_017082.1\|WP_015684160.1\|1704940_1705201_+\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|225481
NC_017082.1\|WP_015684167.1\|1710418_1711153_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NC_017082.1\|WP_173401550.1\|1718270_1718573_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227244
NC_017082.1\|WP_015684178.1\|1719813_1720416_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|274926
NC_017082.1\|WP_015684173.1\|1717281_1717566_-\|hypothetical-protein	unknown	unknown	unknown
NC_017082.1\|WP_015684171.1\|1714317_1715967_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NC_017082.1\|WP_015684172.1\|1715974_1717201_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|274067
NC_017082.1\|WP_015684158.1\|1702579_1703173_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_017082.1\|WP_015684163.1\|1707342_1707588_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NC_017082.1\|WP_015684161.1\|1705187_1705481_+\|BrnA-antitoxin-family-protein	unknown	unknown	gnl\|CDD\|373040
NC_017082.1\|WP_015684164.1\|1707711_1708887_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NC_017082.1\|WP_015684159.1\|1703190_1704837_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|235000
NC_017082.1\|WP_015684176.1\|1718734_1719007_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|381078
NC_017082.1\|WP_015684169.1\|1712771_1713734_-\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NC_017082.1\|WP_015684165.1\|1709015_1709429_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238724
NC_017082.1\|WP_041748094.1\|1717805_1718144_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378701
NC_017082.1\|WP_015684177.1\|1719132_1719621_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099

Protein	Function_ID	Function_description	E-value
NC_017082.1\|WP_015684162.1\|1706406_1707249_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	8.03651e-46
NC_017082.1\|WP_015684166.1\|1709561_1710416_+\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	3.03247e-107
NC_017082.1\|WP_015684160.1\|1704940_1705201_+\|BrnT-family-toxin	gnl\|CDD\|225481	COG2929, COG2929, Uncharacterized protein conserved in bacteria [Function unknown].	9.12614e-26
NC_017082.1\|WP_015684167.1\|1710418_1711153_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	4.17939e-07
NC_017082.1\|WP_173401550.1\|1718270_1718573_+\|hypothetical-protein	gnl\|CDD\|227244	COG4907, COG4907, Predicted membrane protein [Function unknown].	2.54535e-06
NC_017082.1\|WP_015684178.1\|1719813_1720416_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|274926	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily consists of proteins mostly from species that lack the capability to synthesize F420, and therefore most likely all bind FMN.	9.54876e-92
NC_017082.1\|WP_015684171.1\|1714317_1715967_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NC_017082.1\|WP_015684172.1\|1715974_1717201_+\|lytic-murein-transglycosylase	gnl\|CDD\|274067	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase. Members of this family are closely related to the MltB family lytic murein transglycosylases described by TIGR02282 and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many members of this family (unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (pfam01471), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does E. coli MltB in TIGR02282. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.89449e-140
NC_017082.1\|WP_015684158.1\|1702579_1703173_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.2935e-22
NC_017082.1\|WP_015684163.1\|1707342_1707588_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.74447e-09
NC_017082.1\|WP_015684161.1\|1705187_1705481_+\|BrnA-antitoxin-family-protein	gnl\|CDD\|373040	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system. BrnA is family of antitoxins that neutralizes the toxin BrnT, pfam04365. It consists of 3 alpha-helices and a C-terminal ribbon-helix-helix DNA binding domain. As in other toxin-antitoxin systems, BrnA negatively autoregulates the brnTA operon and has higher affinity for the DNA operator when complexed with BrnT. It dimerizes with two molecules of its toxin BrnT.	1.97515e-23
NC_017082.1\|WP_015684164.1\|1707711_1708887_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017082.1\|WP_015684159.1\|1703190_1704837_+\|GMC-family-oxidoreductase-N-terminal-domain-containing-protein	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NC_017082.1\|WP_015684176.1\|1718734_1719007_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	0.000197227
NC_017082.1\|WP_015684169.1\|1712771_1713734_-\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	5.94012e-168
NC_017082.1\|WP_015684165.1\|1709015_1709429_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238724	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.	2.14544e-54
NC_017082.1\|WP_041748094.1\|1717805_1718144_-\|hypothetical-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	0.00119526
NC_017082.1\|WP_015684177.1\|1719132_1719621_+\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	8.27702e-76

>NC_017082.1|WP_015684167.1|1710418_1711153_-|hypothetical-protein
MLPGFRFLFAAILLSTSILVFGLGAAALLRASHEQYVSNPSWRNGPQEQVFAQAPEPATPVLAALRAEPDVVEPAPSVRDQIPTIGLPANEPEQVAAATTEAAAQPPVAEAATPIAEPAKADAPTDAAAPAPVDTLTPADTTASIPEARPASTEMTTAAAPPAPDTSPAKFAALNDPATTAWKDPPAKAKADTSTPDAKATKRKAKAKKRHRIVRRPPPQQLQQQLDPFGQQQTFATTPAPTRR
>NC_017082.1|WP_015684166.1|1709561_1710416_+|3-mercaptopyruvate-sulfurtransferase
MTATDPLVSTEWLAAHINDANVKVLDASFKLPGVLPLPKDDYLAAHLPGAAFFDVDAVSDHSNPLPHMYPSAEQFGRDVGNLGIGNGDTVVLYDAGGWVAAPRAWWMFLAFGHSNVRILNGGLKKWRAEGRPVESGEVKPKPASFKASYDSKRVRSMQQLVANVESRAEQVIDARAADRFEGRAPEPRAGIRSGHIPGARNVPYNQLFDAATGTMKPLDDLRAAFANAGVKLDAPIVTSCGSGVSAGVLTLALYRLGITDTALYDGSWSEWGQADGPAVATGPA
>NC_017082.1|WP_015684165.1|1709015_1709429_+|rhodanese-like-domain-containing-protein
MPQNITRGIKALIDEANAEIETLNAKDAIEISKNGDVVIVDIRDPREIERDGRIPGAFACTRGMLEFWIDPQSPYAKPIFQEDKKFVFHCAGGLRSALAAKTAKDMGLKPVAHIAGGYAAWRDAGGPTEQWEPKKKA
>NC_017082.1|WP_015684164.1|1707711_1708887_+|VWA-domain-containing-protein
MFLQFFTSLRDAQVPVTLREYLTLMEALDADLADYSVENFYYLSRTSLVKDERNLDKFDRVFGTVFKGLESLLDAMEKAEIPEEWLKKLAEKYLSEEEKKQIEAMGWDKLMETLKKRLEEQKGRHQGGSKWIGTAGTSPFGAHGYNPEGVRIGQDKNRNNRAVKVWDKREFKDLDGNVELGIRNIKVALRRLRKFARTGAPDELDLDTTIRETANHGYLDVHMRPERRNAVKLLVFFDIGGSMDAHIEQVEELFSAAKSEFKHMEYFYFHNCLYEGVWKQNKRRFTDRTPTWDVLHKYPHDYKIVFVGDASMSPYEIMVPGGSVEHVNEEPGSVWLDRIIRTYPHAVWLNPVAQKHWDYSESTTIIKRIFANRMFPITIEGLEGAMKELTH
>NC_017082.1|WP_015684163.1|1707342_1707588_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGILAALIIGAIAGWLAGKIVHGAGFGLVGNIVVGIIGALVASYVLPQLHIGLATGTVGAIVDATIGAVIVLVILSLIKRV
>NC_017082.1|WP_015684162.1|1706406_1707249_-|MoxR-family-ATPase
MKFTGTKDYVATDDLKVAVNASIVLERPLLIKGEPGTGKTVLAEEVAKALNAPLLTWHIKSTTKAQQGLYEYDAVSRLRDSQLGDARVSDIRNYIKRGKLWEAFAAEQRPVLLIDEIDKADIEFPNDLLLELDRMEFHVYETGETIKAKQRPIMMITSNNEKELPDAFLRRCFFHYIKFPDADTMGRIVDVHFPGIKKRLVEEALRIFFEVREVPGLKKKPSTSELLDWLKLLLNEDMSVEQLRERDPRKLIPPLHGALLKNEQDVHLFERLAFLSRREV
>NC_017082.1|WP_015684161.1|1705187_1705481_+|BrnA-antitoxin-family-protein
MPNAKKKSNYTKKDLRAVSDNPELTKADFAKARPFSEVFPDLSASIRKGRGPNKAPTKKLVSLRLSPEVVEHFKSTGPGWQSRIDETLRKAVKRKAS
>NC_017082.1|WP_015684160.1|1704940_1705201_+|BrnT-family-toxin
MKIVWDEPKRLANLDKHGLDFADLDEAFFDTALVIPSQSNSKRWIAVGASIRGVIVVVFARLGREGVSIISMRPASRSERKLYAER
>NC_017082.1|WP_015684159.1|1703190_1704837_+|GMC-family-oxidoreductase-N-terminal-domain-containing-protein
MDRFDYVIVGAGSAGCVLTSRLSEDPSTSVCVLEAGPSDWHPYIHLPAGFIKTFHMKSINWAYQQEPGPWTGGRSIYAPRGKTLGGSSSINGHIYNRGQRMDFDTWAQMGNRGWGYADVLPYFKRLEKRVGEGDNTFRGRDGKLTVTTMEWRDPLCEAFMEGAVSLGIPRNPDYNGAKQEGVSYCQRTIDKGLRVSGSTAFLKPAMKRPNVHVHTHAHATEIIFEGKRAVGVRYIKGGRGGTPVEVRANKEVILSGGTYNSPQLLQLSGIGSPDLLGAHGIAVRHALPVGEGLQDHYAPRTVARVKDIKTINELRRGVSLWIEALKWATARRGLLSLSPTMVYCFWHSGESADSSDLQLTFTPASYKEGVQGQLEDEPGMTVASWQQRPESRGYVRIRSNDPFAPPIIQTNYLDAELDRRVIVGGMKLARRLLKSAPLSPYYAYEDFPGPNINTDDEFLAAATERGTTTFHPGCTCRMGPADSSWAVVDDQLRVHGLEGLRVIDASVMPRMISANLNASTMMIADRASDLIRGKTPMEAARIPDAAVA
>NC_017082.1|WP_015684158.1|1702579_1703173_+|GNAT-family-N-acetyltransferase
MPWPDPITLRGQHARLEPLSQQHREGLVEAVKDGEIYKIWYTLIPTPENVAKEIDRRLGLQAAGSMLPFTVFDAGGKIVGQTTYMNIDAANRRVEIGSTWYGKSAQRGPLNTQCKLLLLTHAFETLDCIAVEFRTHFFNHQSRNAIERLGAKQDGILRSHQVAPNGTLRDTVVYSITAAEWPTVRTHLNYQLNEKPR
>NC_017082.1|WP_015684169.1|1712771_1713734_-|D-2-hydroxyacid-dehydrogenase-family-protein
MTRLRCAILDDYFDLALNVADWPKLSDRVDVTVFSHPFASEQAAASALADFEIVCAMRERTAFPKSLFESLPKLKLLLTSGMRNASIDMEAAKARHVAVGGTQYSRDPTAPLTMGLILELTRGIGRENARMHAGEPWQTFAGVEIEGLTLGVIGLGKLGTKMAGIAKAFGMNVIAWSPNLTPDKCKEAGVGYATKEELFAKADIVTIHVVLSERSRGLVGAADLARMKPTAFLVNTARGPIVDEQALLEALQQRKIAGAGIDVFSVEPLPVDHPFRKLDNLVLTPHLGYATEDGLRIHYGQMVEAIDAFTKGGELPRKLA
>NC_017082.1|WP_015684170.1|1713866_1714082_-|hypothetical-protein
MALVETNSLPVPAEAGSSSALVSEIKGFWKRFFATAFNPYRPELHYMRGPGPAWRAKHGMDAPVRLKRSDL
>NC_017082.1|WP_015684171.1|1714317_1715967_+|energy-dependent-translational-throttle-protein-EttA
MARQFIYFMQGLTKSYPTRKVLDNIHLSFYPDAKIGVLGVNGSGKSTLLKIMAGLDKEYNGEAWVAQGARVGYLEQEPQLDAKLSVRENVMLGVAKQKAILDRYNELAMNYSEETADEMTKLQDEIEAQGLWDLDSKVDQAMDALRCPPDDADVTKLSGGERRRVALCKLLLDQPELLLLDEPTNHLDAESVSWLEGHLRNYPGAILIVTHDRYFLDNVTSWILELDRGKGIPYEGNYSSWLVQKQKRLEQEGREDAAHQKTLAREQEWVASSPKARQAKSKARYQRYEDLLKQASEKQTQTAQIIIPVAERLGANVVDFDGISKGFGDRLLIDDLTFKLPPGGIVGVIGPNGAGKTTLFRMITKQEQPDKGTITVGETVHLGYVDQSRDALDGNKNVWEEISGGNELILLGKKEVNSRGYCSAFNFKGADQQKKVGALSGGERNRVHLAKMLKSGSNVLLLDEPTNDLDVDTLRALEEALEDFAGCAVIISHDRWFLDRIATHILAFEGDSHVEWFEGNFQDYEKDKMRRLGQDSIIPHRVKYKKLTR
>NC_017082.1|WP_015684172.1|1715974_1717201_+|lytic-murein-transglycosylase
MMRRALIAAVIVVTCGWSSARAADAAFTQFIASLWPEAQAAGVSRAIFDRETRGLEPDYKLPDLILPRRPVTGAPSQAEFVQVPADYVKEASIARLAGEGQRLLQKYRTSLTEIEKSSGVPATVMLAIWGRETDYGRYTLPYDLVRVLATQAYVGRRKDTYRNEFILSLKILGDGVVTRKDMRSSWAGATGLTQFLPSEYYKHGVDFDRDGRIDIWHSVPDALASAAQQLVNKGWQTGVRWAYEVQAPAKVDCTAGVPEVTKPISQWLREGFVPVRGQKLSAAEQAQPASLLQPEGIYGPAFLTTKNYFVIKEYNFSDLYVLFVGHLSDRMTSPLPFATSWAASKQLRTRDVETMQRGLTRVGLYKDKIDGKAGMQTRAALGAYQKSAGLKVDCWPSEEVLRSIQAAR
>NC_017082.1|WP_015684173.1|1717281_1717566_-|hypothetical-protein
MKKTLVAALTVAMVAGSLVTATPSAQAHDGVGVGIAAGLLGGAIIGGAIASSRPAYGGPVYVAEPGPPPPPCYWQRQRYWDGYGWVIRPVRVCY
>NC_017082.1|WP_041748094.1|1717805_1718144_-|hypothetical-protein
MKRSLLAVAAVVTLALTAGTPAHAQRGVAAGVAAGIIGGAIVGGALASPYYYGPGPGYAYGPGYGPGYYPPRYYAPGPGYVADDYYGGGCVWQKQRFWDGYAWRIRRVRVCG
>NC_017082.1|WP_173401550.1|1718270_1718573_+|hypothetical-protein
MMGDALMNTLIAAGIVFAIGFGWFTHIQNRGRRSRAATGGDGGGGDSYSGTSDSFSPGSWFSSGGSGSSSDAGSCSTSDSGGSGGDCGGGGDGGGGGGGD
>NC_017082.1|WP_015684176.1|1718734_1719007_+|(2Fe-2S)-binding-protein
MIVCSCNVLSDDDIRAVVAESDDAVRHAKQVYGCLGCSAECGRCARTIKTIIDEALGPCAKSCCSGCPHNHAVAANDEIAEPAQFALAAC
>NC_017082.1|WP_015684177.1|1719132_1719621_+|bacterioferritin
MQGDARVIDYLNKALRHELTAINQYWLHYRFLDNWGLRDMAKVWRKESIEEMEHADKLTERILFFDGFPNMQVLDPLRIGQNVKEIIECDLAAEMSARALYQEAAGYCNSAKDYVTRDLFEKLMSDEEHHIDFLETQLDLIGRIGLELYTQKHVGGLEGDGH
>NC_017082.1|WP_015684178.1|1719813_1720416_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTDLCAEDLATIYAKPTPRVIAKARPAIDTHARKFIEMSPFCVLATSGTDGSVDASPRGGGIGFVHVAGPNQLLMPDRAGNNRIDSFRNVVEGSGFVHLLFFVPGIDETLRVGGRGTLSADPDLLASMVEFGKPPRAVLSVAVSEVYFHCGKALMRSKLWAPEKVQRSVMPSITEVIHEQTGLGEPQSQDVVEALYKTQL

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Crispr_ID: NC_017082_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017082_2

6641504-6641581

Orphan

Consensus_repeat	Method
CTCACCCGCGCCATCCGCCGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017082_2

>merge|NC_017082|2|6641504-6641581|CRISPRCasFinder
CTCACCCGCGCCATCCGCCGCGGCGACGGCGAGGCGCTGTTCGACCACTTCACCCGCACCCGCGCCATCCGCCGCGGC

>NC_017082|2|2|6641504-6641581|CRISPRCasFinder
CTCACCCGCGCCATCCGCCGCGGC	GACGGCGAGGCGCTGTTCGACCACTTCACC
CGCACCCGCGCCATCCGCCGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017082.1\|WP_015688842.1\|6646232_6646892_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NC_017082.1\|WP_015688837.1\|6641782_6642967_-\|DUF2125-domain-containing-protein	unknown	unknown	gnl\|CDD\|370743
NC_017082.1\|WP_015688841.1\|6645271_6646240_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NC_017082.1\|WP_015688827.1\|6628554_6630633_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NC_017082.1\|WP_015688828.1\|6630720_6633360_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NC_017082.1\|WP_041748583.1\|6638740_6639589_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|235680
NC_017082.1\|WP_015688835.1\|6639623_6640721_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064
NC_017082.1\|WP_015688833.1\|6637154_6638357_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NC_017082.1\|WP_015688825.1\|6621299_6621890_-\|hypothetical-protein	unknown	unknown	unknown
NC_017082.1\|WP_015688846.1\|6649421_6651551_-\|TIGR02302-family-protein	unknown	unknown	gnl\|CDD\|372724
NC_017082.1\|WP_015688831.1\|6635537_6636401_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017082.1\|WP_041748584.1\|6648001_6648376_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NC_017082.1\|WP_015688838.1\|6643077_6643689_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NC_017082.1\|WP_015688845.1\|6648521_6649418_-\|DUF4175-family-protein	unknown	unknown	gnl\|CDD\|372724
NC_017082.1\|WP_041748582.1\|6634534_6635320_-\|TIGR02594-family-protein	unknown	unknown	gnl\|CDD\|131643
NC_017082.1\|WP_015688840.1\|6644494_6645199_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_017082.1\|WP_015688843.1\|6647073_6647952_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|131153
NC_017082.1\|WP_015688839.1\|6643685_6644459_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_017082.1\|WP_015688829.1\|6633602_6634391_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225758
NC_017082.1\|WP_015688832.1\|6636489_6637152_-\|methionine-biosynthesis-protein-MetW	unknown	unknown	gnl\|CDD\|254024

Protein	Function_ID	Function_description	E-value
NC_017082.1\|WP_015688837.1\|6641782_6642967_-\|DUF2125-domain-containing-protein	gnl\|CDD\|370743	pfam09898, DUF2125, Uncharacterized protein conserved in bacteria (DUF2125). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.25657e-72
NC_017082.1\|WP_015688841.1\|6645271_6646240_-\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	8.42516e-49
NC_017082.1\|WP_015688827.1\|6628554_6630633_+\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	7.00879e-42
NC_017082.1\|WP_015688828.1\|6630720_6633360_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_017082.1\|WP_041748583.1\|6638740_6639589_+\|chorismate-mutase	gnl\|CDD\|235680	PRK06034, PRK06034, hypothetical protein; Provisional.	9.21233e-160
NC_017082.1\|WP_015688835.1\|6639623_6640721_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	0
NC_017082.1\|WP_015688833.1\|6637154_6638357_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NC_017082.1\|WP_015688838.1\|6643077_6643689_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	2.77728e-62
NC_017082.1\|WP_015688846.1\|6649421_6651551_-\|TIGR02302-family-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0
NC_017082.1\|WP_015688831.1\|6635537_6636401_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.65654e-26
NC_017082.1\|WP_041748584.1\|6648001_6648376_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.90112e-22
NC_017082.1\|WP_015688842.1\|6646232_6646892_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	3.02068e-112
NC_017082.1\|WP_015688845.1\|6648521_6649418_-\|DUF4175-family-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	2.20886e-51
NC_017082.1\|WP_041748582.1\|6634534_6635320_-\|TIGR02594-family-protein	gnl\|CDD\|131643	TIGR02594, hypothetical_protein, TIGR02594 family protein. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.	2.24034e-37
NC_017082.1\|WP_015688840.1\|6644494_6645199_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	4.71283e-27
NC_017082.1\|WP_015688843.1\|6647073_6647952_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|131153	TIGR02098, Uncharacterized_protein_MJ0042, MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.	1.40924e-14
NC_017082.1\|WP_015688839.1\|6643685_6644459_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.97695e-39
NC_017082.1\|WP_015688829.1\|6633602_6634391_+\|MOSC-domain-containing-protein	gnl\|CDD\|225758	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only].	3.56713e-30
NC_017082.1\|WP_015688832.1\|6636489_6637152_-\|methionine-biosynthesis-protein-MetW	gnl\|CDD\|254024	pfam07021, MetW, Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.	1.76478e-113

>NC_017082.1|WP_015688835.1|6639623_6640721_+|histidinol-phosphate-transaminase
MSRPVPNPGILDIAPYTPGKSPVAEPGRKVFKLSANETPFGPSPKAIEAFKSVADHLEDYPEGTSRVLREAIGRSFGLDPNRIICGAGSDEILNLLAHTYLSHGDEAISTTHGFLVYPIATMAVGAKNVVAAEKNLTTDVDAILKAVTPKTKLVWLANPNNPTGTYIPFDEVKRLRAGLPSHVLLVLDAAYSDYVSRNDYEMGIELVATTENTVVTHTFSKIHGLAALRIGWMFGPEHIIDAVNRIRGPFNVSTPAMYAAVAAIEDTAHQAMSKQFTETWRNWLAEEIGKLGLKVTPGVANFILIHFPTDKGKTSDAADAYLTKRGLVLRGLKNYGLHHALRMTIGTEEANRLVVDGLRDFMAGK
>NC_017082.1|WP_041748583.1|6638740_6639589_+|chorismate-mutase
MSQRPPAPPSLQELRKEIDAIDEGMHRLLMQRGDIIDRLIQVKQTQEVGSAFRPAREAAMMRDLVQRHRGILPLDTVESIWRVIISTFTYVQAPFSVHADISVSEPAMRDSARFHFGFTVPYVAHFSAQAAVEAVAKSKGDLALVSATSSRTPWWLELEAAGAPKIIARMPFVERADHPAALPVFAISRVPDSALVTEIETFSVRVSGWNADVARALSPLAEIVAVPDTAFDGAALLVSVTSATSSDKIKAALIEAGASVRSTALVGSHATRYTVPSTGPKS
>NC_017082.1|WP_015688833.1|6637154_6638357_-|homoserine-O-acetyltransferase
MVGVKSIPSPAISADDRSHEVDHPSSQVAQFGADQPLRLDCGVDLTPFQIAYQTYGELNADRSNAVLICHALTGDQHVANLHPVTGKPGWWETLVGPGRPLDPSRYFIICSNVIGGCMGSTGPASINPATGKVWGLDFPVITIPDMVRAQAMLIDRLGIDTLFAVVGGSMGGMQVLQWTAAYPRRVYSALAIACATRHSAQNIAFHELGRQAVMADPDWHNGGYADHGIHPHRGLAVARMAAHITYLSDAALHRKFGRRMQDRELPTFSFDADFQVESYLRYQGSSFVERFDANSYLYLTRAMDYFDIAGDHGGVLAKAFAGIQTRFCVVSFTSDWLFPTSESRALVHALNASSARVSFAEIETDRGHDAFLLDVPEFLDISRAFLQSAGKARGLTGKEG
>NC_017082.1|WP_015688832.1|6636489_6637152_-|methionine-biosynthesis-protein-MetW
MSVQEVLPLDGLTTEQRGQFRADHLLVAGMVKPGSKVLDVGCGEGDLLQLLETRGIDGRGIELSREGVNRCVAKGLAVVQGDADTDLVNYPDDAFDYVILSQTLQATRQPKVVLENLLRIGRRAIVSFPNFGFWKMRLQLLVGGHMPRTENLPASWYDTANIHFCTIKDFVELCDAIGVKMERAEALDLYGRPLRLRMPWWVWNLFGEQGVFLLTRGQGK
>NC_017082.1|WP_015688831.1|6635537_6636401_+|alpha/beta-hydrolase
MPHATTRDDVRIYFEEAGQGTPIIFLHEFAADYTNWEPQMRYFSRGHRCITYSARGYTPSDVPDGEVYSYQHFYTDALAVLDHLEIERAHLVGLSMGAYSSLQIGLNAPQRALSMTLAGVGSGSEIENLDAWRRQCRANAEQFETLGSSEVAKVTREAPSRIPFLIKDPRGHADFYAALARHDAKGSANTMRGFQGGRPSIFTMTDAIKKATTPALIICGDEDDPCVGASLFLKKHLPAAGLAMFPKSGHVLNLEEPALFNASVERFVTLVEAGRWPVRDPRSLAGH
>NC_017082.1|WP_041748582.1|6634534_6635320_-|TIGR02594-family-protein
MFELFASRLLRCLVALALFFAAVAAVSSPASARPYRHSAERHAHAHHARYHHHYRHHARSSRVERSASQWQTSGFMNAQASYDPNANGGSMGSMNFAGGGDMSTGGNTSRVGKMSRAVNKSYAVNKNGAGDMGNTGNMSMSGGFGGGSGLVSEARRYVGGNPTGRGSLWCARFMNMVLEKTGHRGTGSDMANSFAHYGTRVSGPQVGAIAVMSRGRRGGHVGIITGVDAQGNPIMISGNNGNRVREAPVSRGRIYAYVMPN
>NC_017082.1|WP_015688829.1|6633602_6634391_+|MOSC-domain-containing-protein
MTVSQTAEITSLYRYPIKGLTPEPLPRVLLRTGQTLPADRRYAIENGPSGFDPEQPQWKPKIQFLMLARNERLASLDSRFEDATNRLTIRRDGQIVASGDLETSAGRAAIEEYFRENFQPELKGPPKILSGRDHSFSDVARKVVSIINLGSVGAIETMLGGTKVHPLRFRGNLYVKGWPAWSELDLVGQTLAIGQARLKVVKRIVRCPAVNVDPETAVRDLEIPPTLSRNLGHMDCGIYAEVIADGEIGLGDVVAVEEPRLV
>NC_017082.1|WP_015688828.1|6630720_6633360_-|ATP-dependent-chaperone-ClpB
MNIDKYTERSRGFVQSAQSLAVREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRAILKATEDALAKVPKVSGGGAGQIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLTLEKTSEAGVILAKGGVTPQNLNAAIEALRKGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPEGLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLQEVTSAEGSIILFIDEMHTLIGAGKGDGAMDASNLLKPALARGELHCIGATTLDEYRKHVEKDAALARRFQPIFVPEPTVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNRYITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDREIIRLKIEQEALKKESDAGSKSRLQTLEKELAELEEKSSALTARWSAEKNKLSDAQKLKAELDGLRIDLADAQRRGEFQKAGELAYGRIPQLEKQLADIEAKENSGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEKEKLLKMEGQLGQRVVGQAEAVRAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQPEGEDTSAVREHVMATVRTHFRPEFLNRVDEIILFHRLQKSEMGRIVEIQFSRLERLLTDRKIVLTLDGKARDWLAEKGWDPAYGARPLKRVVQRYVQDPLAEMILAGDIKDGDAVAISSEGNVLTFNGKAPQTAEIAQFEAPVSKRKLN
>NC_017082.1|WP_015688827.1|6628554_6630633_+|M23-family-metallopeptidase
MNHRTSRGAYGRETGIIDLGHEPPLSVDGSEAAVIDRRRVSVQWFSGTILTGLCGAALIGGAVFASLDGEMTFAKVPERVEGALRGAFGAADRAATLHKSDRLPPPNESSASRNIVRVSTVARVGNRDVMRVRPFIRIAGNLSMTTSDLSAKIPPFNAQRLLTDVGSDPKTASEDPNNPEAVEPDAEVSFVTKDLSPVLPKAKISAVVALDDILMRVRDAANWRGNGGVRYASLANAAADVSGASGKSDISGSDMKMAYATEVSPSDPYAGFETRVVPENVTLLPKTKEQITGGNPNGERVHVVKKGDTVSAVLRDLGATAEEIKAITATLGPRGRDGGLKEGERLRILMAPASPGARLQPYRVVVANDTMVEAIAALSDLGKYVAVDVSSMNTVADAAASANSDDDDDDDGTGVRLYQSIYETAMRNKVPMPVIEDMIKIYSYDVDFQRKVQPGDSFDVFYAGEDEGVTASEKNDVLFASLTIGGETKKYYRYQSPDDGVVDYYDETGKSAKKFLVRKPVNTAIMRSGFGGRRHPILGFVKMHTGVDWATSYGTPIFASGNGVIEKAGPEGGYGKYIRIKHSNGYETAYGHMSAFAKGMEPGKKVRQGQVIGFVGSSGMSTGPHVHYEILVNGRFVDPMRVKLPRGRSLEGPMMAGFEKERDRLDGMMSGRNGAIARMSDATGGPLQVTNR
>NC_017082.1|WP_015688825.1|6621299_6621890_-|hypothetical-protein
MPALLRPALTALGVACLLSAASLASSGPAFAQAKPAAPAQQQAEPAQAPPLKQIALTDKQMEGVLAAQKDMDAITEKLPENAAPDQKVIAQLDAIAKKNGFAGYDDYNIVIDNISLVLGGFDPATKKYVGTEAVIKAQIAQVEANTKMPAKDKKEALDELNDALKTPAPAVENKGNIDLVSKYYDKLLAALGDDEN
>NC_017082.1|WP_015688837.1|6641782_6642967_-|DUF2125-domain-containing-protein
MSDMTVAAGRRSRWGLFIAPVLLLILAVAWSGFWFYAASQAEVAADAWRAQEAKAGRIYDCAKRSIAGFPFRFEVQCSGASVALVSQNASKTPFTARLDNILVVAQVYDPKLVIAEFSSPATLTDGVTQNTFVVNWSKGRSSVVGLPAIPDRASIVFDDLTINRLDGSVQVPLARAKQVELHGRLADGSPADHPVIETVAHIAQGSIQGVHPLLAEPFEADTRAKITGLSDLTPKPWPQRFREIQAAGGHIEIVQSRIQQGEMIAVAAGTLGLSANGRLDGELQMTVTGLERVIPALGIEKMLEEGVPQATLDRVAPGVKSQDLNNLFGALDRAVPGLGKVIKQNANAGLAAGINSIGTESTLEGKKARSFPLKFVDGAVLLGPVKVGVIPPLY
>NC_017082.1|WP_015688838.1|6643077_6643689_+|gamma-glutamylcyclotransferase
MSEITLPSVTTAKGDLWVFGYGSLMWRPGFEFEERVPARLVGEHRALCVYSFVHRGTPEKPGLVLGLDRGGACRGIAFRVAEKKRTDVIGYLRAREQVTSVYREVMRSVWLEGDAGQRVSALAYVVDRGHVQYAGRLSLADQHRHVLQGHGQSGANRDYVTATVKAIEAEGFRDTQLHQLALMLHGEAHSLHAPAPADDRENR
>NC_017082.1|WP_015688839.1|6643685_6644459_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MFLIFLRSLVFNVLFYTVLVCLAIVALPTFALPPRAMLTVAKWWATATLFLMRVVCNIKVEFRGVEKIPQGPLVIVAKHQSFWETFVLPGFFNRPIFILKRQLMQIPVFGQFLVKTGMIAIDRKAGVKALLDMTRRARDAVRGGGQLVIFPEGTRRAPGAPPDYKTGFAQIYSSCGVQCLPIALNSGLFWPRRTFMRYPGTLVVEFLDPLPPGLPKDEFLSRVQAAIEEATGRLVEAGRKEQEQLIGASPSYAPSES
>NC_017082.1|WP_015688840.1|6644494_6645199_-|YdcF-family-protein
MTSPTDDRSPKLPRGWLRATVVSTIALVFVGAAAGFIAFLSQLRGAEIVPDRKADGIVVLTGGSSRVSDAMELLAAGYGKRLLISGVHPTSTASDISRTLPENQSFMHCCVDLDRTAVSTRGNAAEARRWAEGRGFRSLIVVTSNYHMPRALVEFSHAMPETTLIPFAVVGDKWREEPWWTSASTLRLLMSEYVKYIAAELRVRLEDFGIDLSPEMSEQPPGLQPKRPATAQAN
>NC_017082.1|WP_015688841.1|6645271_6646240_-|ABC-transporter-permease
MSRTDERGVLVDLGQERPQLPARARNMSPIVPRASIQGRALVAVVAIMTFLASMTTGAVLLVSASAAEWQSDVASEITIQVRPQSGRDLDRDTVAVTEVMRAQAGIVEVKPFTREESGKLLEPWLGTGLSMDDLPVPRMIIARVQPGTALDLGALRARVTQAAPSASVDDHRAWIERMRSMTNATVLAGLGILALVIIATIISVSFATRGAMAANRPIVEVLHFVGAGDRYIANRFLRHFLRLGLEGGLIGGGAAMLVFGFSESIAGWFSGTPVGDQFAALLGTFSLRPSGYAVLAVQAVLIGAITAVASRQTLFATLNDVD
>NC_017082.1|WP_015688842.1|6646232_6646892_-|cell-division-ATP-binding-protein-FtsE
MVRFENVGLRYGLGPEILRDLNFQIPAHSFQFLTGPSGAGKTSLLRLLFLSHRPTRGLVNLFGHDVSQLGKDEIADLRKRIGIVLQDFRLLDHMTTYENVALPFRVMGRSESSYRKEVIDLLKWVGLGERMDALPPILSGGEKQRAAIARAVISRPQLLLADEPTGSVDPTLGRRLLRLFIELNKSGTAVIIATHDIALMDQYEARRFVLHQGRLHVYE
>NC_017082.1|WP_015688843.1|6647073_6647952_+|zinc-ribbon-domain-containing-protein
MHIVCPHCTTSYAIKLGSLGANGRTVRCSRCKETWVAYAEDAIEEASVPAMAAASRGNDQSDLAAEWNSYAEDDGAADTPVVDSPSIASDWPAEDAKEIEDEWSAAARSADEDVAGVRHQSWFRSLFPRRGARVSRPVAATAPRKSYFGLPAACAAMGALVLALVIWRGDMVRLLPQTAAFYKMVGFEVNLRGLTFRDVKLSSETVEGKQVLVIEGVIVGQGKKPLDIPRLRFAVRDAQGAEIYAWNTVLEQTVLQPGERAFFRSRLASPPPEGRNIDVRFFNRRDIAGGSV
>NC_017082.1|WP_041748584.1|6648001_6648376_+|response-regulator
MPKVLIADDEDSMRQLVARAIAMDGHETVTAQDGAEALEILTREDGAFDLLLTDIQMPVMDGIALALSVARDFPDLTILLMTGFADQRERASNLNALVHDVVTKPFSVADIRTAVADALAAKKG
>NC_017082.1|WP_015688845.1|6648521_6649418_-|DUF4175-family-protein
MKHISIWHKGKTRGGLATACLVLALSCSTVSIGLAQSSRADQKSLDALLDSADRSMKQSADSLKDKNTDESVGQQSKAIRDMEKYLYPDPNDPSAQREGSQDTQDRQEQLKKRLEALKKKLAEMGLQQDGQKGQRGQKQPGQQGQQGQQGQGQDGDQDGDDGFDAAENAMGDAGNQIGEGDADGATASQGKAIDALRKGMQDLADSMGGQQQGEGQEPGDGEGPGQAVGRQQGNGERTDPLGRPLRGKEYSDDYTVKIPGEIDAQRARRILEELRRRLSDPARPQIELDYLERLLKDF
>NC_017082.1|WP_015688846.1|6649421_6651551_-|TIGR02302-family-protein
MNGVTPDPSDPIRDGDALSRLKLAQALQRATYAIAWERAWPHLARVLTVVGLFLVVSWAGLWLALPSVVRAIGLVLFVGIAIAALVPLIRFRWPRREEALARLDRGSGIRHRPATTLTDTLTSQDPIAQALWQAQRERTLASLKRIRAGLPHPRLALHDPWALRALVMVMLVATFFAAGSERAMRLGAAFDWNGVLAPSNVRVDAWVTPPLYTGKPPIILSAANKEAAALPASGPLAVPAGSTLIVRSSGGSLDVAISGGLKEVAPTEAAPKGTNEKHFTIAGDGSAHVRAPSGQPQWAFTAMPDRAPTIALAKDPERQAYGALQLSYKIEDDYGVTAAAAQIVPRAADGTEGTKDATRDTDGKAARPLYQPPQFPLTLPNARTRNGVGQTVKDLSEDPYSGADVTLTLTAKDEAGNEAKSEPFNMRLPGRLFTKPLARALIEQRRILALDANRNSDVYSALDALMIAPEMFTPEAGQYLGLHSVARQLEAARTDDSLREVVASLWALAVTIEDGNISDVAKALRAAQDALKQALQRGASDEELKKLMDNLRTALDNYMRQYAQQMRNNPLARPAVGLDDQMKRIERLIQRGNRDAAARELDRLARLLERPPGPPSAEQREMDEIARELNDLLREQNALRDETDRQSKDAKRGPRTKPLPPKVAEILRKSRELRQKTRGATSDQLDDLAKQQEALREELKTWRESQGSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1372702-1372731	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	694916-694945	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1976933-1976962	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	446552-446581	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1448401-1448430	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1626161-1626190	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1752094-1752123	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1290436-1290465	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1886808-1886837	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1015231-1015260	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1378883-1378912	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1375611-1375640	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1663044-1663073	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1341190-1341219	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	614007-614036	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1431446-1431475	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1448383-1448412	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1364991-1365020	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1431446-1431475	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1431446-1431475	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1365013-1365042	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1430649-1430678	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1365013-1365042	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1365013-1365042	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1431445-1431474	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1529823-1529852	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1365013-1365042	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1365013-1365042	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	261038-261067	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP012183	Pseudonocardia sp. EC080610-09 plasmid pBCI2-2, complete sequence	98566-98595	5	0.833
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP016480	Synechococcus sp. PCC 7117 plasmid unnamed3, complete sequence	8794-8823	6	0.8
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	163064-163093	6	0.8
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	138164-138193	6	0.8
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	107751-107780	6	0.8
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP017303	Rhodococcus sp. YL-1 plasmid pYLL1 sequence	305299-305328	7	0.767
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP015091	Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence	241116-241145	7	0.767
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	176763-176792	7	0.767
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	106230-106259	7	0.767
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	560412-560441	7	0.767
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP054603	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed4, complete sequence	75274-75303	8	0.733
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2088722-2088751	8	0.733
NC_017082_2	2.1\|6641528\|30\|NC_017082\|CRISPRCasFinder	6641528-6641557	30	NZ_CP029051	Miniimonas sp. S16 plasmid pS16-2, complete sequence	28906-28935	9	0.7

1. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

2. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

3. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

4. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

5. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

6. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

7. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

8. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

9. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

10. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

11. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

12. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

13. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

14. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

15. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

16. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

17. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

18. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

19. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

20. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

21. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

22. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

23. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

24. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

25. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

26. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

27. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

28. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atgggcgaggtgctgttcgaccacatcacc	Protospacer
.  *******.************* *****

29. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gagcgcgaggcgctgttcgaccgcttccgc	Protospacer
**  ******************.****  *

30. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP012183 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-2, complete sequence) position: , mismatch: 5, identity: 0.833

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
cacatcgaggagctgttcgaccacctcacc	Protospacer
 **. ***** *************.*****

31. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP016480 (Synechococcus sp. PCC 7117 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
cccggcgaggatctgttcgaccacttcaat	Protospacer
  ********  **************** .

32. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 6, identity: 0.8

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gacggcgcggcgctgttcgtccactgcctg	Protospacer
******* *********** ***** * .

33. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.8

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gtgggcgcggcgctgttcggccacttcggc	Protospacer
*  **** ***********.*******. *

34. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 6, identity: 0.8

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gacggcgaggcgctgggcgaccatgccgcc	Protospacer
***************  ******. .*.**

35. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 7, identity: 0.767

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
aagatcgaggcgcagttcgaccactacaca	Protospacer
.* . ******** *********** ***

36. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 7, identity: 0.767

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gagggcgaggcgctggtcgaccaggcaatc	Protospacer
** ************ *******  . *.*

37. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 7, identity: 0.767

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
accctcgaggcgctggtcgaccactgcatc	Protospacer
. *  ********** ********* **.*

38. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gggcgggcggcgctgttcgaccacgtcacg	Protospacer
*.  * * **************** ****

39. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 7, identity: 0.767

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
aagatccaggcgcagttcgaccactacacc	Protospacer
.* . * ****** *********** ****

40. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP054603 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atttccgaggcgctgttcgaccgctccagc	Protospacer
. .  *****************.**.** *

41. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
atggacgaggcgctgttcgaccgctttccg	Protospacer
.  *.*****************.***. *

42. spacer 2.1|6641528|30|NC_017082|CRISPRCasFinder matches to NZ_CP029051 (Miniimonas sp. S16 plasmid pS16-2, complete sequence) position: , mismatch: 9, identity: 0.7

gacggcgaggcgctgttcgaccacttcacc	CRISPR spacer
gacggcgcggcgctggtcgaccaggagcag	Protospacer
******* ******* *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2880332 : 2908462

Rhodobacter_phage(16.67%)

portal,integrase,protease,capsid,terminase,tail,head

attL 2877531:2877546|attR 2901418:2901433

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2877531:2877546	attL	NA	NA	NA	NA
WP_041748219.1\|2880332_2881517_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_041748825.1\|2881701_2881887_-	hypothetical protein	NA	NA	NA	NA
WP_015685286.1\|2882110_2882323_-	hypothetical protein	NA	NA	NA	NA
WP_015685287.1\|2882319_2882817_-	hypothetical protein	NA	NA	NA	NA
WP_015685288.1\|2882891_2883380_-	hypothetical protein	NA	NA	NA	NA
WP_041748220.1\|2883343_2883985_-	phage repressor	A0A1X9HW95	Ruegeria_phage	3.3e-15	36.4
WP_015685290.1\|2884061_2884313_+	hypothetical protein	A0A1B0T6N5	Pelagibaca_phage	2.5e-06	51.1
WP_015685292.1\|2884515_2884707_+	hypothetical protein	NA	NA	NA	NA
WP_015685293.1\|2884793_2885099_+	hypothetical protein	NA	NA	NA	NA
WP_015685294.1\|2885091_2885445_+	hypothetical protein	NA	NA	NA	NA
WP_015685295.1\|2885441_2885777_+	hypothetical protein	NA	NA	NA	NA
WP_015685296.1\|2885773_2886850_+	hypothetical protein	A0A060AGD9	Listeria_phage	5.1e-16	33.7
WP_015685297.1\|2886846_2887290_+	Myb-like DNA-binding domain-containing protein	NA	NA	NA	NA
WP_015685298.1\|2887286_2887730_+	hypothetical protein	NA	NA	NA	NA
WP_015685299.1\|2887726_2888074_+	hypothetical protein	NA	NA	NA	NA
WP_015685300.1\|2888066_2889977_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_015685301.1\|2889981_2890254_+	hypothetical protein	NA	NA	NA	NA
WP_015685302.1\|2890292_2890766_-	hypothetical protein	NA	NA	NA	NA
WP_041748223.1\|2890861_2891116_+	hypothetical protein	NA	NA	NA	NA
WP_083850043.1\|2891112_2893905_+	bifunctional DNA primase/polymerase	G8DGC0	Emiliania_huxleyi_virus	2.5e-83	36.7
WP_015685305.1\|2894287_2894878_+	transcription termination/antitermination NusG family protein	NA	NA	NA	NA
WP_015685306.1\|2895085_2895283_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_015685307.1\|2895319_2895595_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	1.1e-10	44.4
WP_144031609.1\|2895624_2896941_-	hypothetical protein	NA	NA	NA	NA
WP_144031610.1\|2897122_2897620_+	hypothetical protein	I3ULZ5	Rhodobacter_phage	1.5e-31	52.0
WP_144031929.1\|2897681_2899307_+\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	2.3e-177	61.1
WP_015685310.1\|2899311_2900568_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	3.1e-81	45.4
WP_041748829.1\|2900591_2901281_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.0e-42	46.9
WP_015685312.1\|2901295_2902642_+\|capsid	phage major capsid protein	A0A2H4JD98	uncultured_Caudovirales_phage	4.0e-95	48.5
2901418:2901433	attR	NA	NA	NA	NA
WP_015685313.1\|2902742_2902934_+	hypothetical protein	NA	NA	NA	NA
WP_015685314.1\|2903017_2903389_+	hypothetical protein	A0A1B1IUW2	uncultured_Mediterranean_phage	1.6e-06	36.6
WP_015685315.1\|2903450_2903936_+	hypothetical protein	NA	NA	NA	NA
WP_015685316.1\|2903939_2904134_+	hypothetical protein	NA	NA	NA	NA
WP_015685317.1\|2904133_2905258_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_041748226.1\|2905295_2906321_-	hypothetical protein	NA	NA	NA	NA
WP_015685318.1\|2906421_2907675_-	hypothetical protein	NA	NA	NA	NA
WP_015685319.1\|2907799_2908462_+\|head,tail	phage head-tail connector protein	B4UTP7	Rhizobium_phage	3.1e-08	30.1

DBSCAN-SWA_2

3504805 : 3514889

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015685904.1\|3504805_3505834_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.9e-22	42.0
WP_015685905.1\|3505830_3506670_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.5e-31	36.7
WP_015685906.1\|3506691_3507441_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.9e-44	49.7
WP_015685907.1\|3507605_3507839_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.4e-08	63.6
WP_015685908.1\|3507924_3508449_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_015685909.1\|3508445_3509258_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.2e-55	48.0
WP_015685910.1\|3509454_3510786_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.1e-100	53.2
WP_015685911.1\|3510880_3511243_+	hypothetical protein	NA	NA	NA	NA
WP_041748289.1\|3511369_3512137_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-36	37.6
WP_015685913.1\|3512140_3512512_-	response regulator	NA	NA	NA	NA
WP_144031650.1\|3512740_3513391_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-27	49.4
WP_015685915.1\|3513500_3514889_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	Q8SBN9	Clostridium_phage	2.4e-18	40.9

DBSCAN-SWA_3

3917549 : 3957460

Sinorhizobium_phage(21.43%)

portal,integrase,protease,capsid,terminase,tail

attL 3955875:3955891|attR 3963100:3963116

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015686305.1\|3917549_3918059_-\|protease	protease IV	NA	NA	NA	NA
WP_015686306.1\|3918055_3919279_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_015686307.1\|3919564_3920248_+	hypothetical protein	NA	NA	NA	NA
WP_015686308.1\|3920285_3921101_-	hypothetical protein	NA	NA	NA	NA
WP_015686309.1\|3921101_3922712_-	hypothetical protein	A0A076G7H5	Sinorhizobium_phage	4.2e-14	36.1
WP_015686310.1\|3922746_3924222_-	hypothetical protein	NA	NA	NA	NA
WP_144031947.1\|3924214_3924637_-	hypothetical protein	NA	NA	NA	NA
WP_015686312.1\|3924651_3925257_-	hypothetical protein	A0A076G707	Sinorhizobium_phage	1.2e-17	29.8
WP_015686313.1\|3925253_3925946_-	hypothetical protein	NA	NA	NA	NA
WP_015686314.1\|3925945_3927952_-\|tail	phage tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	2.0e-05	24.0
WP_158324551.1\|3927950_3928328_+	hypothetical protein	NA	NA	NA	NA
WP_015686316.1\|3928306_3928744_-	hypothetical protein	NA	NA	NA	NA
WP_015686317.1\|3928789_3930013_-	hypothetical protein	NA	NA	NA	NA
WP_015686318.1\|3930027_3930495_-	hypothetical protein	NA	NA	NA	NA
WP_015686319.1\|3930502_3930973_-	hypothetical protein	F8TVA4	EBPR_siphovirus	1.8e-05	28.3
WP_015686320.1\|3930969_3931302_-	hypothetical protein	NA	NA	NA	NA
WP_015686321.1\|3931301_3931676_-	hypothetical protein	NA	NA	NA	NA
WP_015686322.1\|3931679_3932009_-	hypothetical protein	NA	NA	NA	NA
WP_015686323.1\|3932106_3932418_-	hypothetical protein	NA	NA	NA	NA
WP_015686324.1\|3932419_3933046_-	hypothetical protein	NA	NA	NA	NA
WP_015686325.1\|3933178_3933583_+	hypothetical protein	NA	NA	NA	NA
WP_041748337.1\|3933672_3934122_-	hypothetical protein	NA	NA	NA	NA
WP_015686327.1\|3934202_3935546_-\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	2.5e-28	30.8
WP_015686328.1\|3935645_3936506_-	S49 family peptidase	H6WYH0	Enterobacter_phage	1.2e-23	34.4
WP_015686329.1\|3936495_3937839_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	3.9e-42	31.7
WP_015686330.1\|3937838_3939554_-\|terminase	terminase large subunit	I3ULZ6	Rhodobacter_phage	1.5e-115	42.2
WP_041748338.1\|3939555_3940050_-	hypothetical protein	I3ULZ5	Rhodobacter_phage	9.1e-21	40.9
WP_015686332.1\|3940144_3940423_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	4.5e-09	42.2
WP_015686333.1\|3940544_3941045_-	hypothetical protein	NA	NA	NA	NA
WP_015686335.1\|3942180_3942864_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_051026563.1\|3942860_3944051_-	helix-turn-helix domain-containing protein	A0A291AUK7	Sinorhizobium_phage	6.4e-20	37.8
WP_015686337.1\|3944098_3944377_-	hypothetical protein	NA	NA	NA	NA
WP_015686338.1\|3944369_3944828_-	hypothetical protein	NA	NA	NA	NA
WP_015686339.1\|3944824_3945037_-	hypothetical protein	NA	NA	NA	NA
WP_144031677.1\|3945432_3946083_+	hypothetical protein	NA	NA	NA	NA
WP_015686342.1\|3946088_3946331_-	hypothetical protein	NA	NA	NA	NA
WP_015686343.1\|3946327_3946858_-	phosphohydrolase	B4UTT6	Rhizobium_phage	2.1e-39	46.6
WP_015686344.1\|3946854_3949515_-	hypothetical protein	A0A218M985	Mycobacterium_phage	6.8e-54	41.2
WP_041748340.1\|3949507_3950011_-	HNH endonuclease	NA	NA	NA	NA
WP_015686346.1\|3950007_3950280_-	DUF2312 domain-containing protein	A0A2L0V115	Agrobacterium_phage	8.0e-19	65.8
WP_015686347.1\|3950276_3950690_-	ABC transporter permease	NA	NA	NA	NA
WP_015686348.1\|3950689_3950941_-	hypothetical protein	NA	NA	NA	NA
WP_015686349.1\|3950937_3951105_-	hypothetical protein	NA	NA	NA	NA
WP_015686351.1\|3951538_3952159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144031678.1\|3952122_3952632_+	hypothetical protein	NA	NA	NA	NA
WP_015686353.1\|3952761_3953049_-	hypothetical protein	NA	NA	NA	NA
WP_144031948.1\|3953161_3953638_+	phospholipase	NA	NA	NA	NA
WP_015686355.1\|3953637_3953883_+	hypothetical protein	NA	NA	NA	NA
WP_144031949.1\|3953996_3954176_+	hypothetical protein	NA	NA	NA	NA
WP_015686357.1\|3954172_3954361_+	hypothetical protein	NA	NA	NA	NA
WP_144031679.1\|3954357_3955107_-	hypothetical protein	NA	NA	NA	NA
WP_041748342.1\|3955398_3955986_-	hypothetical protein	NA	NA	NA	NA
3955875:3955891	attL	NA	NA	NA	NA
WP_015686360.1\|3956089_3957460_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015686360.1\|3956089_3957460_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3963100:3963116	attR	NA	NA	NA	NA

DBSCAN-SWA_4

5221809 : 5230939

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015687552.1\|5221809_5223498_-	CHASE3 domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-14	61.0
WP_015687553.1\|5223781_5225473_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-14	61.0
WP_015687555.1\|5225640_5226918_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.8e-74	42.9
WP_015687556.1\|5226914_5227697_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_015687557.1\|5227711_5228629_-	NAD-binding protein	A0A077SLF7	Escherichia_phage	4.9e-68	49.0
WP_041748456.1\|5228733_5229408_+	aldolase	A0A077SK32	Escherichia_phage	1.0e-46	48.8
WP_015687559.1\|5229519_5230224_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-12	25.1
WP_015687560.1\|5230207_5230939_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	5.7e-11	28.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017082

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection