CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017294	Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome	3 crisprs	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	0	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017294_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017294_1

114769-115197

Orphan

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

6 spacers

The CRISPR arrays of NC_017294_1

>merge|NC_017294|1|114769-115197|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATATCAATATATAAATTTATATTTTTATAGCCATAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATATAAAAGAACTATCTAATTTATTAAAAAAATAAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATATTAAGTCCAAATTTTAAACTTATAAGATTTCCTGTCGCACCTCACGCAGGTGCGTGGATTGAAATCAGCCTGTTCGGCAAAGGCTAAATGACGTTATGAGTCGCACCTCACGCAGGTGCGTGGATTGAAATCTCAAGTTTAACAACACTATAATTGCGGTCATATGTCGCACCTCACGCAGGTGCGTGGATTGAAATGTAACGTTGATATGATCGTGCTCTTACATCGATATGTCGCACCTCACGTAGGTGCGTGGATTGAAGG

>NC_017294|1|1|114769-115130|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCAATATATAAATTTATATTTTTATAGCCATAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATAAAAGAACTATCTAATTTATTAAAAAAATAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGTCCAAATTTTAAACTTATAAGATTTCCT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGCCTGTTCGGCAAAGGCTAAATGACGTTATGA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTCAAGTTTAACAACACTATAATTGCGGTCATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT

>NC_017294|1|1|114769-115197|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCAATATATAAATTTATATTTTTATAGCCATAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATAAAAGAACTATCTAATTTATTAAAAAAATAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGTCCAAATTTTAAACTTATAAGATTTCCT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGCCTGTTCGGCAAAGGCTAAATGACGTTATGA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTCAAGTTTAACAACACTATAATTGCGGTCATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTAACGTTGATATGATCGTGCTCTTACATCGATAT
GTCGCACCTCACGTAGGTGCGTGGATTGAAGG

>NC_017294|1|1|114769-115197|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCAATATATAAATTTATATTTTTATAGCCATAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATAAAAGAACTATCTAATTTATTAAAAAAATAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGTCCAAATTTTAAACTTATAAGATTTCCT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CAGCCTGTTCGGCAAAGGCTAAATGACGTTATGA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTCAAGTTTAACAACACTATAATTGCGGTCATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTAACGTTGATATGATCGTGCTCTTACATCGATAT
GTCGCACCTCACGTAGGTGCGTGGATTGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017294.1\|WP_005807574.1\|115244_115496_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|224885
NC_017294.1\|WP_005807590.1\|101730_103572_+\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NC_017294.1\|WP_005807560.1\|119206_119407_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017294.1\|WP_005807562.1\|118872_119088_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017294.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224031
NC_017294.1\|WP_005807588.1\|103672_107212_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235868
NC_017294.1\|WP_005807592.1\|100736_101618_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807554.1\|119949_120216_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807576.1\|113999_114587_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807556.1\|119684_119864_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807595.1\|99799_100702_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NC_017294.1\|WP_005807596.1\|98794_99784_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|376670
NC_017294.1\|WP_005807572.1\|115838_116573_+\|DUF3644-domain-containing-protein	unknown	unknown	gnl\|CDD\|378842
NC_017294.1\|WP_005807569.1\|117315_117822_-\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807584.1\|108227_109649_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NC_017294.1\|WP_005807568.1\|117858_118473_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_017294.1\|WP_005807564.1\|118647_118866_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017294.1\|WP_005807558.1\|119461_119680_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_017294.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_017294.1\|WP_005807586.1\|107240_108200_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111

Protein	Function_ID	Function_description	E-value
NC_017294.1\|WP_005807574.1\|115244_115496_-\|peptidase-S24	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	7.92999e-15
NC_017294.1\|WP_005807590.1\|101730_103572_+\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	6.593e-144
NC_017294.1\|WP_005807560.1\|119206_119407_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.87852e-12
NC_017294.1\|WP_005807562.1\|118872_119088_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.34961e-16
NC_017294.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	3.60856e-16
NC_017294.1\|WP_005807564.1\|118647_118866_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.61297e-11
NC_017294.1\|WP_005807588.1\|103672_107212_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235868	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.	0
NC_017294.1\|WP_005807595.1\|99799_100702_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	1.08203e-55
NC_017294.1\|WP_005807596.1\|98794_99784_+\|YvcK-family-protein	gnl\|CDD\|376670	pfam01933, UPF0052, Uncharacterized protein family UPF0052.	6.26926e-122
NC_017294.1\|WP_005807572.1\|115838_116573_+\|DUF3644-domain-containing-protein	gnl\|CDD\|378842	pfam12358, DUF3644, Protein of unknown function (DUF3644). This domain family is found in bacteria, and is typically between 65 and 80 amino acids in length.	2.58912e-16
NC_017294.1\|WP_005807584.1\|108227_109649_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NC_017294.1\|WP_005807568.1\|117858_118473_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	9.37652e-28
NC_017294.1\|WP_005807558.1\|119461_119680_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.08849e-08
NC_017294.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.23087e-40
NC_017294.1\|WP_005807586.1\|107240_108200_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0

>NC_017294.1|WP_005807576.1|113999_114587_+|hypothetical-protein
MGGKKAQIQYLRCILICHGKSEKEFMETIKQNLRLKIHIESDKKGSKSIQINSLNKTLKNHKYGKRDNFLRYFEDIELIKGKITSEFKIFTLLDTDDKEKEINLIKYLNKEMFKEHHLYDHIVPIYNTPNLESVFEEIGHVFKNKGEARKREYKDLLKPYPTPKLARNYLKDLSGKFEKSKNTNLNHVINFLLNI
>NC_017294.1|WP_005807578.1|112694_113999_+|AAA-family-ATPase
MFTGIKLKNFKSLVDFEVKFPRNRKLVIIYGENGVGKSNFIDAFSILRKLVTGRPFDVDDFLELANLKFNHGLSNIDMDAEVITDLFKTSNLKRIIESCKTINSEGENMVLSFDFTLRGKKGSYIIETDDNRLISERLEYVYNKQIVEFFNVNNDEIYLNEKVIKNKEYYEELINNCEKYWGKNTLTSMIFKDIQSKNDKYMSKSLTKNMIEIIDYFSSLNISVSGQILFPGLHLGEGITQMSNQAELDKNEKILDDIFTRLYPDIKQVYYKKEIIDDGKINYKLYFKKLVGNKILDIDIERESKGTKQVLNITKQILYGLDKQVLIIDEFDTGIHDILAKSMLQSLYDSLDMQIIITTHNTLLIEAKDLCKNAYVLTHNIDGSKDMIAISDFEKRIHSNLNIRDRYLRGMYGGVPIPLDIDFSDYSDANLEDC
>NC_017294.1|WP_005807580.1|111269_112460_-|site-specific-integrase
MTGSVRKRGDKWYYSFEAARVDGKRKRIERVGGRTKKEAEAALRKALEDYENGEQLQKTNISVSDYMDLWFDAYVLLNCRYNTQRSYRLIIDKHIKPSLGILKLTSLTPGKLQDFINSKYLTGISKNHLNNIISLLSGSLNYSVHPMNFLKNNPMQYVKIPKYNNTKTTDKHKIITNDDFNAIIKRFPERSSFYIPLMIGYHTGCRIGEAMGLTWDDIDLDNNTININKLIYKKDTSWYFGEPKTTSSSRIINIGNTLKNALKYHKRYIDIKRLEYGEHYIKQYNINDKITTSSLNLKEHLLNMVCVKSNGMLLTPDSFKYASRVINYELGIPFNFHSLRHTHATLLVENGANIKDVQHRLGHNNIQTTLNTYTHNTDKLAKQSVDIFENIILPTY
>NC_017294.1|WP_005807584.1|108227_109649_+|pyruvate-kinase
MRKTKIVCTIGPASDKYDILRELIEKGMNVMRLNFSHGDFEEHGNRIKLVRQISEELNKNVGIMLDTKGPEIRTKKFEGKVLLNQGDKFVIYTKEDIVGDSTRCSVTYEDLYKDVEVGGKILIDDGLVALEIEDVEDGKISCIVLNSGEISSNKGVNLPKSKIKLPALTEKDKNDLLFGIKNDVEYVAASFIRKSDDVIQIRKFLDLNGGDFIKIISKIENQEGLDNIDEIIDSSDGIMVARGDLGVEIPIENLPHWQKLIIKKCNDRGKFVITATQMLDSMIRNPRPTRAEASDVANAIHDGSDAVMLSGETANGKYPLEAYEIMDKIIVTTEQSLDYEGKLQKKLSKIEYKDVPNTIALFSCTTANEVGAKAILACTKSGATAKFVSRFRPECPIISITQMKKVARMLSIYWGVYTQTISETIDNTDMLIDLSVDKAKKEYNFKDGDLVVVSASVPANFKGHTNMLKVHEI
>NC_017294.1|WP_005807586.1|107240_108200_+|6-phosphofructokinase
MKKIAILTSGGDAPGMNAAVRSVVRYALSKDIEVLGIHRGYHGLLHGEIESLSRRSVSDIIDRGGTFLKTARCLEFKQEEVRAQAYEILKSHNVDGLVVVGGDGSFTGAHLLSKFGLSTVGIPGTIDNDLPYTDYTIGFDTALNTILDAVRKLRDTSSSHERVSIVEVMGRNCGDLALYSALAGGAEAVIVPEYPFNREGLCKTILESKKNKKLHSLIILAEGAGNAEDLRKYIQQKIGLDTRATVLGHIQRGGIPTGRDRVLASVMGRKAVDTLLSNEVCAKVIGVKENTVFDMDIEEALKIEKKFNKDLYDLVNKLV
>NC_017294.1|WP_005807588.1|103672_107212_+|DNA-polymerase-III-subunit-alpha
MNDFVHLHVHSEFSLLDSSCKIRNLVERAKELGMTSLAITDHGVMYGCLEFYKACKMYGIKPIIGCEIYVANKSMDIKNADKDNFTSHLVLLVKDEIGYRNLLKIVSDSFIRGFYYKPRVDIEYLKEHSEGLIALSACLSGGISKYILRNDIDGAKNLSIIYKEIFKEDFYLEIQDHGIEDQKKVNNLLLEFSSELDIKLVVTNDVHYIKKDDANAHDVLICIQTGSNVDEERRMKYHGDQFYLKSKDEMYEAFPNYMDGLLNTIEIRDKCNFEYKFHENMPPKYIMDNSLEPFEYLKRLCYLGLINKYDEFSHEIEIFKIEDILDDSKFEILKEEIGKNITDTKKKLVDRVKYELNLINSMGFVDYFLIVWDFIKFCMEKSIPTGPGRGSVAGSIVAYVLNITKVDPIKYSLIFERFLNPERISMPDIDSDFCNERREEVISYVRDKYGDQNVSNIITFGTMAAKACIRDVGRAMNYPYGEVDKIAKMVPNMLNITIDLALLYNKELNDLYNNDLRVKKLIDISKRLEGLPRHTSIHAAGVIISPYNLTDLIPVKKDGDMLVTQFPMANLEELGLLKMDFLGLRTLTVINDCIKIIEKNKGIKIDLDNIDFDDQNVFNMIGDGKTCGVFQLESFGMTSFMKELKPNSIEDIIAGISLYRPGPMDEIPNYIKNKNNIGDIKYLTKELEDILNVTYGVIVYQEQVMEIVQKLSGYSLGRSDLVRRAMAKKKHEEMEKERKKFVYGYKDGEEIIKGCVNNGIDEKIAHKIFDQMVDFASYAFNKSHAAAYAIIAYETAYLMRYYKSEYICALLNSVINNMDKVCYYIRFGESMNIKIFPPCVNNSHNKFIVEGEYIYFGLSAIKNLGEGACEKIVYYREKYGKFKNEYDFFKACVKCSINKKGIESIIKSGALDVFNISRSYLLMNFEKIVDGISKEFRENLEGQMNLFGLIGREDDKTFKLNNRDDLYDDSDKNLLFEKEVLGIYISGHPIHKYKEILDKVCTNSISDFYDDDMKINDGYEVVIGGSVREFKKIITKNNSMMCFLYVEDKYSSIECVVFPKVYEKFNYLINDNSIVIIKGVFKKNDDVFKIIVNEIIGIEEYDRFKLYILCKSLKEITNSFNKAKDILISNRGHVNVNLYSLEGKKVFRVNDYGVNLSNSLICELNKVFSQEFVKVIITK
>NC_017294.1|WP_005807590.1|101730_103572_+|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGFSNFNKDIRSEFNNILMMNDSLYHRGPDEFDYYKHKNVVLGHRRLSIVDPNGGKQPMQRIVNFHKYTIVYNGEIYNTDEIRDDLVSKGYSFYTYSDTEVVLINYIHYKEECVSKLNGIFAFCIFDEDRNCLFMARDQLGVKPIFYSFKDGYLIFGSEIKSLLKHPKVSPIVCGDGILDLLGLGPSRSLGEGIFKDVKEIPPAHYLFIYKDRITLKEYWRLESKEHNLTLEDTKEKLSLMLENAIKKQMVSDRGIFSFLSGGIDSSLISAVVSDEFNKEGKILDTFTVDYVDYDKDFEGNEFEVTSDKYFVKVVNESIKSNNRIITIKNEDLFYALEDGLYSSDIPSMADIDTSLYLFCKGIKNYGTVGLSGECADEIFGGYPWYLNEEDLKLNKFPWNRFSGIRKELFNDKIKNLDFDSYIKNKFDETLKDVCILDSDSELDAKIRKMTTLNVKWFMVTLLNRKDRMSMANSLEIRVPFADRELVEFSYNIPAKFKFLNGREKGILREVSRKFLPDSIIDRKKSPYPKTQSAIYTNLVVNELSNILDNKSNPIFEIIDEKSVRKLIESRGNSYTKPWFGQLMRGPQLMAYLIQINMWLKKYNINLSL
>NC_017294.1|WP_005807592.1|100736_101618_+|hypothetical-protein
MEKVNIAEINYKNYNNCLRITNNLVEVIVFMENTIRIVKYGYVNGNNQFEDILIDNDSRDIIGGGHSFSYIPQIDQNVDFIDNQGITYERISSGIRLIQNIEKWTQIRRVIEIIFYENSTKIKVIHKILSLNAFDINIAICSNTVVRNGGIEIIPFSIGNNRDVPNKSLVFWPYSNLKDSRVYLGDKYIAMKVNENICDRFRMGVNTDLRYVLYYNNNEMFVKEFDEIKGCYEYPNMGCKYESLITTNYLEMKSNSPIYKLSTNNYITHIEVWNIYKDINLDFIDKFIDQYNK
>NC_017294.1|WP_005807595.1|99799_100702_+|DNA-binding-protein-WhiA
MTFSYFVKTEILENCFRSYKQAVSELMGVVYGTRYTINNNEITVRIDNHLLVNYLDNMLNIINGFGYSVNEDNVKSNTYIFKSYYMYKLLLYVDNGEFKHNINLIIENKIIDRAYLIRGLFLICGSIINPNNSYHLEFCLYNYDLSYFLDLVLNFFCIKSKMIKRKDRFIIYVKEAESISQFLKVIGVHRSVLEFENIRVLKEYTNNKNRLKNCIQANEDKSIIASVKQVRAIMYIDKYIGLDKLSSKLKEIAMVRLKYKEAPLGELGKYLNPPIGKSGVLHRLKKIEKIASELEDKYGV
>NC_017294.1|WP_005807596.1|98794_99784_+|YvcK-family-protein
MELFNKFCNNPKVVVIGGGTGIPTILRGIKKFTNCITSVVTVADDGGGSGILRDELGILPPGDIRNCLIALANTEPIMEELLKYRFSDGNLKNQSFGNLFIAAMIGITNNFESAIKAISDVLAITGKVLPVTNENIVLEAKLHNGIIVRGESKIPEEVIKYNSNIKEISIIPSDAKPINDCINEILNADAIVFGPGSLYTSILPNLKIKGICDSINKNNGKHIYVANIMTQYGETQGYTLYDHVKSIFYNTDILKLDYIIVNDGKLSREYEKRYKIKNSELVYCDYEKFENMNVKIVKDNLIKIENGFIRHDEDKVSKIIMNIINHDFK
>NC_017294.1|WP_005807574.1|115244_115496_-|peptidase-S24
MSPTMDENDIVIVKKQNDISSGDIAIVCINGDEATCKKIIKHKDGISLVSLNSKYEPMYYDKNDIADKPIHIIGKVVELRRRF
>NC_017294.1|WP_005807572.1|115838_116573_+|DUF3644-domain-containing-protein
MEEKEKLLKKSKEIFSLVSCMYCYYSGPYKIETVCILLCNAWELMLKAYIIGKKGKEGIVYKNKQNKGRTIGLNECISKVFTNKHDILRKHLESVIRYRNSVVHYTVDSFDLSLYSKIEYCIVNFKAKMCELHNVNMSDMIVNQANEEILKNDVDLYKYSKKSLCREINNVLKSLGIEFKIDSQTFELFDRVYGIKENKEYCLISNVNNRPSYRYSSRVLNFIVGLIQKNPNNIKEVLKNKIKK
>NC_017294.1|WP_005807569.1|117315_117822_-|hypothetical-protein
MKKFAVIIMFLSLIFITSCSNKEVAVIFNAPEYAKITKDQLYQKLGEPKYADEWTNKTSKGDFRLTNHTYFIDNLYLEITTFEDIVVKIHAFPNETNTFKFENNYLDIFKQFGMDVKSNIKPAEQKNNKYLKFLNISDAVEEVEIYHLNKSDKTYNYVYITFDSSYFD
>NC_017294.1|WP_005807568.1|117858_118473_-|helix-turn-helix-domain-containing-protein
MYERFKKLLDDNNVKASEIAKTTGIPPSTFSDWKVGRSRPKLDKIKKIADYFGVSYLWLSGDTEDVQSKETHDKAIKIPILGTVIAGIPISAIEEIIGWEEISPKLASQGEYFALVIKGDSMSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGNEATCKKIIKHKDGISLVSLNLKYEPMYYDKNDIINKPIHIIGKVVELRRRF
>NC_017294.1|WP_005807564.1|118647_118866_+|helix-turn-helix-transcriptional-regulator
MYKIFKNLLEENGISAYKVSKETGIPQSTFTDWHKGRSKPKIEKLVILADFFNVDVGIFIKDKLNVKNKASQ
>NC_017294.1|WP_005807562.1|118872_119088_-|helix-turn-helix-transcriptional-regulator
MILQKRLREMRNTLHLTQSKVAKDVDINERTYQRYENGDIEPKASNLFKLAKYFNVSTDYLLGLSDDPTRR
>NC_017294.1|WP_005807560.1|119206_119407_+|helix-turn-helix-transcriptional-regulator
MINKLKKLRLNAGLTQNYISHKVGLHPRNYQKIEQGKHLPRVDRALDIAKALNSTVEELFSNDKLQ
>NC_017294.1|WP_005807558.1|119461_119680_+|helix-turn-helix-domain-containing-protein
MANDILYTVPEVSKLIKTNPSYVYTLIRLGLLPALKLGSLKVRRTSLLDFLERFEGKDLTDLEHIRDLETGV
>NC_017294.1|WP_005807556.1|119684_119864_+|hypothetical-protein
MIRKQIESLIGQVDDRTYAEALKMTEADIKANRLSFNLKTQIEDFILILINSIKIIRRK
>NC_017294.1|WP_005807554.1|119949_120216_+|hypothetical-protein
MDPLTDELVIAYSVQPNDTEVKIVKLKLEEWDKDELKDILAGDFVTFETLEVVTPEELSDVVSDWISFNDDLTDDEFIDSCVKNITKQ

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Crispr_ID: NC_017294_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017294_2

116969-117262

Orphan

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

4 spacers

The CRISPR arrays of NC_017294_2

>merge|NC_017294|2|116969-117262|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATATCATCTATTTTTAAAACAACAACAGATCCCATGTCGCACCTCACGCAGGTGCGTGGATTGAAATCACCGTGGTGTTTAATGCTTTTGCCATTGCTATGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTTTCAATATTATTATCCATATCTAAATTATAGTAGTCGCACCTCACGCAGGTGCGTGGATTGAAATAGTCCTTTCTTATTTGTGAATTATTTGATATAAGTCGCACCTCACGCAGGTGCGTGGATTGAGTT

>NC_017294|2|2|116969-117197|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCATCTATTTTTAAAACAACAACAGATCCCAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CACCGTGGTGTTTAATGCTTTTGCCATTGCTAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTTCAATATTATTATCCATATCTAAATTATAGTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT

>NC_017294|2|2|116969-117262|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCATCTATTTTTAAAACAACAACAGATCCCAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CACCGTGGTGTTTAATGCTTTTGCCATTGCTAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTTCAATATTATTATCCATATCTAAATTATAGTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AGTCCTTTCTTATTTGTGAATTATTTGATATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAGTT

>NC_017294|2|2|116969-117262|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATCATCTATTTTTAAAACAACAACAGATCCCAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CACCGTGGTGTTTAATGCTTTTGCCATTGCTAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTTCAATATTATTATCCATATCTAAATTATAGTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AGTCCTTTCTTATTTGTGAATTATTTGATATAA
GTCGCACCTCACGCAGGTGCGTGGATTGAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017294.1\|WP_005807574.1\|115244_115496_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|224885
NC_017294.1\|WP_005807590.1\|101730_103572_+\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NC_017294.1\|WP_005807560.1\|119206_119407_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017294.1\|WP_005807562.1\|118872_119088_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017294.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224031
NC_017294.1\|WP_005807588.1\|103672_107212_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235868
NC_017294.1\|WP_005807592.1\|100736_101618_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807576.1\|113999_114587_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807556.1\|119684_119864_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807550.1\|120531_121668_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NC_017294.1\|WP_005807554.1\|119949_120216_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807572.1\|115838_116573_+\|DUF3644-domain-containing-protein	unknown	unknown	gnl\|CDD\|378842
NC_017294.1\|WP_005807569.1\|117315_117822_-\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807584.1\|108227_109649_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NC_017294.1\|WP_005807568.1\|117858_118473_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_017294.1\|WP_005807564.1\|118647_118866_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017294.1\|WP_005807552.1\|120232_120532_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005807558.1\|119461_119680_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_017294.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_017294.1\|WP_005807586.1\|107240_108200_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111

Protein	Function_ID	Function_description	E-value
NC_017294.1\|WP_005807574.1\|115244_115496_-\|peptidase-S24	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	7.92999e-15
NC_017294.1\|WP_005807590.1\|101730_103572_+\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	6.593e-144
NC_017294.1\|WP_005807560.1\|119206_119407_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.87852e-12
NC_017294.1\|WP_005807562.1\|118872_119088_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.34961e-16
NC_017294.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	3.60856e-16
NC_017294.1\|WP_005807564.1\|118647_118866_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.61297e-11
NC_017294.1\|WP_005807588.1\|103672_107212_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235868	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.	0
NC_017294.1\|WP_005807550.1\|120531_121668_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	0
NC_017294.1\|WP_005807572.1\|115838_116573_+\|DUF3644-domain-containing-protein	gnl\|CDD\|378842	pfam12358, DUF3644, Protein of unknown function (DUF3644). This domain family is found in bacteria, and is typically between 65 and 80 amino acids in length.	2.58912e-16
NC_017294.1\|WP_005807584.1\|108227_109649_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NC_017294.1\|WP_005807568.1\|117858_118473_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	9.37652e-28
NC_017294.1\|WP_005807558.1\|119461_119680_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.08849e-08
NC_017294.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.23087e-40
NC_017294.1\|WP_005807586.1\|107240_108200_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0

>NC_017294.1|WP_005807572.1|115838_116573_+|DUF3644-domain-containing-protein
MEEKEKLLKKSKEIFSLVSCMYCYYSGPYKIETVCILLCNAWELMLKAYIIGKKGKEGIVYKNKQNKGRTIGLNECISKVFTNKHDILRKHLESVIRYRNSVVHYTVDSFDLSLYSKIEYCIVNFKAKMCELHNVNMSDMIVNQANEEILKNDVDLYKYSKKSLCREINNVLKSLGIEFKIDSQTFELFDRVYGIKENKEYCLISNVNNRPSYRYSSRVLNFIVGLIQKNPNNIKEVLKNKIKK
>NC_017294.1|WP_005807574.1|115244_115496_-|peptidase-S24
MSPTMDENDIVIVKKQNDISSGDIAIVCINGDEATCKKIIKHKDGISLVSLNSKYEPMYYDKNDIADKPIHIIGKVVELRRRF
>NC_017294.1|WP_005807576.1|113999_114587_+|hypothetical-protein
MGGKKAQIQYLRCILICHGKSEKEFMETIKQNLRLKIHIESDKKGSKSIQINSLNKTLKNHKYGKRDNFLRYFEDIELIKGKITSEFKIFTLLDTDDKEKEINLIKYLNKEMFKEHHLYDHIVPIYNTPNLESVFEEIGHVFKNKGEARKREYKDLLKPYPTPKLARNYLKDLSGKFEKSKNTNLNHVINFLLNI
>NC_017294.1|WP_005807578.1|112694_113999_+|AAA-family-ATPase
MFTGIKLKNFKSLVDFEVKFPRNRKLVIIYGENGVGKSNFIDAFSILRKLVTGRPFDVDDFLELANLKFNHGLSNIDMDAEVITDLFKTSNLKRIIESCKTINSEGENMVLSFDFTLRGKKGSYIIETDDNRLISERLEYVYNKQIVEFFNVNNDEIYLNEKVIKNKEYYEELINNCEKYWGKNTLTSMIFKDIQSKNDKYMSKSLTKNMIEIIDYFSSLNISVSGQILFPGLHLGEGITQMSNQAELDKNEKILDDIFTRLYPDIKQVYYKKEIIDDGKINYKLYFKKLVGNKILDIDIERESKGTKQVLNITKQILYGLDKQVLIIDEFDTGIHDILAKSMLQSLYDSLDMQIIITTHNTLLIEAKDLCKNAYVLTHNIDGSKDMIAISDFEKRIHSNLNIRDRYLRGMYGGVPIPLDIDFSDYSDANLEDC
>NC_017294.1|WP_005807580.1|111269_112460_-|site-specific-integrase
MTGSVRKRGDKWYYSFEAARVDGKRKRIERVGGRTKKEAEAALRKALEDYENGEQLQKTNISVSDYMDLWFDAYVLLNCRYNTQRSYRLIIDKHIKPSLGILKLTSLTPGKLQDFINSKYLTGISKNHLNNIISLLSGSLNYSVHPMNFLKNNPMQYVKIPKYNNTKTTDKHKIITNDDFNAIIKRFPERSSFYIPLMIGYHTGCRIGEAMGLTWDDIDLDNNTININKLIYKKDTSWYFGEPKTTSSSRIINIGNTLKNALKYHKRYIDIKRLEYGEHYIKQYNINDKITTSSLNLKEHLLNMVCVKSNGMLLTPDSFKYASRVINYELGIPFNFHSLRHTHATLLVENGANIKDVQHRLGHNNIQTTLNTYTHNTDKLAKQSVDIFENIILPTY
>NC_017294.1|WP_005807584.1|108227_109649_+|pyruvate-kinase
MRKTKIVCTIGPASDKYDILRELIEKGMNVMRLNFSHGDFEEHGNRIKLVRQISEELNKNVGIMLDTKGPEIRTKKFEGKVLLNQGDKFVIYTKEDIVGDSTRCSVTYEDLYKDVEVGGKILIDDGLVALEIEDVEDGKISCIVLNSGEISSNKGVNLPKSKIKLPALTEKDKNDLLFGIKNDVEYVAASFIRKSDDVIQIRKFLDLNGGDFIKIISKIENQEGLDNIDEIIDSSDGIMVARGDLGVEIPIENLPHWQKLIIKKCNDRGKFVITATQMLDSMIRNPRPTRAEASDVANAIHDGSDAVMLSGETANGKYPLEAYEIMDKIIVTTEQSLDYEGKLQKKLSKIEYKDVPNTIALFSCTTANEVGAKAILACTKSGATAKFVSRFRPECPIISITQMKKVARMLSIYWGVYTQTISETIDNTDMLIDLSVDKAKKEYNFKDGDLVVVSASVPANFKGHTNMLKVHEI
>NC_017294.1|WP_005807586.1|107240_108200_+|6-phosphofructokinase
MKKIAILTSGGDAPGMNAAVRSVVRYALSKDIEVLGIHRGYHGLLHGEIESLSRRSVSDIIDRGGTFLKTARCLEFKQEEVRAQAYEILKSHNVDGLVVVGGDGSFTGAHLLSKFGLSTVGIPGTIDNDLPYTDYTIGFDTALNTILDAVRKLRDTSSSHERVSIVEVMGRNCGDLALYSALAGGAEAVIVPEYPFNREGLCKTILESKKNKKLHSLIILAEGAGNAEDLRKYIQQKIGLDTRATVLGHIQRGGIPTGRDRVLASVMGRKAVDTLLSNEVCAKVIGVKENTVFDMDIEEALKIEKKFNKDLYDLVNKLV
>NC_017294.1|WP_005807588.1|103672_107212_+|DNA-polymerase-III-subunit-alpha
MNDFVHLHVHSEFSLLDSSCKIRNLVERAKELGMTSLAITDHGVMYGCLEFYKACKMYGIKPIIGCEIYVANKSMDIKNADKDNFTSHLVLLVKDEIGYRNLLKIVSDSFIRGFYYKPRVDIEYLKEHSEGLIALSACLSGGISKYILRNDIDGAKNLSIIYKEIFKEDFYLEIQDHGIEDQKKVNNLLLEFSSELDIKLVVTNDVHYIKKDDANAHDVLICIQTGSNVDEERRMKYHGDQFYLKSKDEMYEAFPNYMDGLLNTIEIRDKCNFEYKFHENMPPKYIMDNSLEPFEYLKRLCYLGLINKYDEFSHEIEIFKIEDILDDSKFEILKEEIGKNITDTKKKLVDRVKYELNLINSMGFVDYFLIVWDFIKFCMEKSIPTGPGRGSVAGSIVAYVLNITKVDPIKYSLIFERFLNPERISMPDIDSDFCNERREEVISYVRDKYGDQNVSNIITFGTMAAKACIRDVGRAMNYPYGEVDKIAKMVPNMLNITIDLALLYNKELNDLYNNDLRVKKLIDISKRLEGLPRHTSIHAAGVIISPYNLTDLIPVKKDGDMLVTQFPMANLEELGLLKMDFLGLRTLTVINDCIKIIEKNKGIKIDLDNIDFDDQNVFNMIGDGKTCGVFQLESFGMTSFMKELKPNSIEDIIAGISLYRPGPMDEIPNYIKNKNNIGDIKYLTKELEDILNVTYGVIVYQEQVMEIVQKLSGYSLGRSDLVRRAMAKKKHEEMEKERKKFVYGYKDGEEIIKGCVNNGIDEKIAHKIFDQMVDFASYAFNKSHAAAYAIIAYETAYLMRYYKSEYICALLNSVINNMDKVCYYIRFGESMNIKIFPPCVNNSHNKFIVEGEYIYFGLSAIKNLGEGACEKIVYYREKYGKFKNEYDFFKACVKCSINKKGIESIIKSGALDVFNISRSYLLMNFEKIVDGISKEFRENLEGQMNLFGLIGREDDKTFKLNNRDDLYDDSDKNLLFEKEVLGIYISGHPIHKYKEILDKVCTNSISDFYDDDMKINDGYEVVIGGSVREFKKIITKNNSMMCFLYVEDKYSSIECVVFPKVYEKFNYLINDNSIVIIKGVFKKNDDVFKIIVNEIIGIEEYDRFKLYILCKSLKEITNSFNKAKDILISNRGHVNVNLYSLEGKKVFRVNDYGVNLSNSLICELNKVFSQEFVKVIITK
>NC_017294.1|WP_005807590.1|101730_103572_+|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGFSNFNKDIRSEFNNILMMNDSLYHRGPDEFDYYKHKNVVLGHRRLSIVDPNGGKQPMQRIVNFHKYTIVYNGEIYNTDEIRDDLVSKGYSFYTYSDTEVVLINYIHYKEECVSKLNGIFAFCIFDEDRNCLFMARDQLGVKPIFYSFKDGYLIFGSEIKSLLKHPKVSPIVCGDGILDLLGLGPSRSLGEGIFKDVKEIPPAHYLFIYKDRITLKEYWRLESKEHNLTLEDTKEKLSLMLENAIKKQMVSDRGIFSFLSGGIDSSLISAVVSDEFNKEGKILDTFTVDYVDYDKDFEGNEFEVTSDKYFVKVVNESIKSNNRIITIKNEDLFYALEDGLYSSDIPSMADIDTSLYLFCKGIKNYGTVGLSGECADEIFGGYPWYLNEEDLKLNKFPWNRFSGIRKELFNDKIKNLDFDSYIKNKFDETLKDVCILDSDSELDAKIRKMTTLNVKWFMVTLLNRKDRMSMANSLEIRVPFADRELVEFSYNIPAKFKFLNGREKGILREVSRKFLPDSIIDRKKSPYPKTQSAIYTNLVVNELSNILDNKSNPIFEIIDEKSVRKLIESRGNSYTKPWFGQLMRGPQLMAYLIQINMWLKKYNINLSL
>NC_017294.1|WP_005807592.1|100736_101618_+|hypothetical-protein
MEKVNIAEINYKNYNNCLRITNNLVEVIVFMENTIRIVKYGYVNGNNQFEDILIDNDSRDIIGGGHSFSYIPQIDQNVDFIDNQGITYERISSGIRLIQNIEKWTQIRRVIEIIFYENSTKIKVIHKILSLNAFDINIAICSNTVVRNGGIEIIPFSIGNNRDVPNKSLVFWPYSNLKDSRVYLGDKYIAMKVNENICDRFRMGVNTDLRYVLYYNNNEMFVKEFDEIKGCYEYPNMGCKYESLITTNYLEMKSNSPIYKLSTNNYITHIEVWNIYKDINLDFIDKFIDQYNK
>NC_017294.1|WP_005807569.1|117315_117822_-|hypothetical-protein
MKKFAVIIMFLSLIFITSCSNKEVAVIFNAPEYAKITKDQLYQKLGEPKYADEWTNKTSKGDFRLTNHTYFIDNLYLEITTFEDIVVKIHAFPNETNTFKFENNYLDIFKQFGMDVKSNIKPAEQKNNKYLKFLNISDAVEEVEIYHLNKSDKTYNYVYITFDSSYFD
>NC_017294.1|WP_005807568.1|117858_118473_-|helix-turn-helix-domain-containing-protein
MYERFKKLLDDNNVKASEIAKTTGIPPSTFSDWKVGRSRPKLDKIKKIADYFGVSYLWLSGDTEDVQSKETHDKAIKIPILGTVIAGIPISAIEEIIGWEEISPKLASQGEYFALVIKGDSMSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGNEATCKKIIKHKDGISLVSLNLKYEPMYYDKNDIINKPIHIIGKVVELRRRF
>NC_017294.1|WP_005807564.1|118647_118866_+|helix-turn-helix-transcriptional-regulator
MYKIFKNLLEENGISAYKVSKETGIPQSTFTDWHKGRSKPKIEKLVILADFFNVDVGIFIKDKLNVKNKASQ
>NC_017294.1|WP_005807562.1|118872_119088_-|helix-turn-helix-transcriptional-regulator
MILQKRLREMRNTLHLTQSKVAKDVDINERTYQRYENGDIEPKASNLFKLAKYFNVSTDYLLGLSDDPTRR
>NC_017294.1|WP_005807560.1|119206_119407_+|helix-turn-helix-transcriptional-regulator
MINKLKKLRLNAGLTQNYISHKVGLHPRNYQKIEQGKHLPRVDRALDIAKALNSTVEELFSNDKLQ
>NC_017294.1|WP_005807558.1|119461_119680_+|helix-turn-helix-domain-containing-protein
MANDILYTVPEVSKLIKTNPSYVYTLIRLGLLPALKLGSLKVRRTSLLDFLERFEGKDLTDLEHIRDLETGV
>NC_017294.1|WP_005807556.1|119684_119864_+|hypothetical-protein
MIRKQIESLIGQVDDRTYAEALKMTEADIKANRLSFNLKTQIEDFILILINSIKIIRRK
>NC_017294.1|WP_005807554.1|119949_120216_+|hypothetical-protein
MDPLTDELVIAYSVQPNDTEVKIVKLKLEEWDKDELKDILAGDFVTFETLEVVTPEELSDVVSDWISFNDDLTDDEFIDSCVKNITKQ
>NC_017294.1|WP_005807552.1|120232_120532_+|hypothetical-protein
MILTFKLDSNDTNGIKKLITLCENLLSFEETATPELEFVREEPKTDIKIDDLRNALIKLAKDKGKETAKELLNEFKVEKLTDVNTSDYDRLLQRIREVQ
>NC_017294.1|WP_005807550.1|120531_121668_+|DUF2800-domain-containing-protein
MLHAKLSASGAKKWINCPLSVVLESKMPNEETPYAKEGTLAHELSELKLRRELNLIGKEAYDTEVSKLDYDDEMDKYTDYYCDVVMEIVNKYDRNYSTVRLEEKVDFSPWVPEGFGTSDVIIISDNTAEVVDLKYGKGVKVSADNNPQLMLYALGVLNDYNYICDIKEVNLTIVQPRLDSISSFKINVYDLLEWGETIRVKALKAFNGEGDCVVGKHCDDGFCRARPICKAYADERLKIAKYDFKDPAELSADDIADILGTVDELVRWSKTIKDYALTKALSGEEYKGFKLVEGRSNRTFNIDDSKVLEILKGGGFKESEVCETTLKSLSSLEKMIGKKDFKTMLGSHVIKPMGKPTLVPIDDVRPVYNSAVNDFNNI

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Crispr_ID: NC_017294_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017294_3

737971-738597

TypeI

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

9 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_017294_3

>merge|NC_017294|3|737971-738597|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATCTTTTGTTGAGGGACTCTCTAAACGCTCTTATACGTCGCACCTCACGCAGGTGCGTGGATTGAAATTAAGTATATTAGACAACCATTTAATTATACAAAAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATAATCTCTGGTTCGTTGAATAATAGTTTTAATATGTCGCACCTCACGCAGGTGCGTGGATTGAAATATTAAATAACAGTATTAAGGATGGTTTTTACTCGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTCATCTATACAAGATAAAATTTTATTTTCTATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATATGTCGCACCTCACGCAGGTGCGTGGATTGAAATGACACAATTGGAACAGAAACAACACAAGTAAAAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTGTGCCAAGTTATAAAACTTTTTAAAAATAAGGTCGCACCTCATGCAGGTGCGTGGATTGAAATGTATAAATCTGCCCTAATTAAAAATCTTATAGTTGGTCGCACCTCACGCAGGTGCGTGGATTGAGAA

>NC_017294|3|3|737971-738530|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTTTTGTTGAGGGACTCTCTAAACGCTCTTATAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TAAGTATATTAGACAACCATTTAATTATACAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATCTCTGGTTCGTTGAATAATAGTTTTAATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAATAACAGTATTAAGGATGGTTTTTACTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTCATCTATACAAGATAAAATTTTATTTTCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GACACAATTGGAACAGAAACAACACAAGTAAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTGTGCCAAGTTATAAAACTTTTTAAAAATAAG
GTCGCACCTCATGCAGGTGCGTGGATTGAAAT

>NC_017294|3|3|737971-738597|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTTTTGTTGAGGGACTCTCTAAACGCTCTTATAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TAAGTATATTAGACAACCATTTAATTATACAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATCTCTGGTTCGTTGAATAATAGTTTTAATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAATAACAGTATTAAGGATGGTTTTTACTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTCATCTATACAAGATAAAATTTTATTTTCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GACACAATTGGAACAGAAACAACACAAGTAAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTGTGCCAAGTTATAAAACTTTTTAAAAATAAG
GTCGCACCTCATGCAGGTGCGTGGATTGAAAT	GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAGAA

>NC_017294|3|3|737971-738597|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CTTTTGTTGAGGGACTCTCTAAACGCTCTTATAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TAAGTATATTAGACAACCATTTAATTATACAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AATCTCTGGTTCGTTGAATAATAGTTTTAATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAATAACAGTATTAAGGATGGTTTTTACTC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTCATCTATACAAGATAAAATTTTATTTTCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GACACAATTGGAACAGAAACAACACAAGTAAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTGTGCCAAGTTATAAAACTTTTTAAAAATAAG
GTCGCACCTCATGCAGGTGCGTGGATTGAAAT	GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017294.1\|WP_005806405.1\|729113_730043_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NC_017294.1\|WP_005806371.1\|745928_746534_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005806392.1\|737509_737800_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_017294.1\|WP_005806377.1\|743642_744377_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377915
NC_017294.1\|WP_005806394.1\|736468_737497_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_017294.1\|WP_005806373.1\|745120_745453_+\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|368695
NC_017294.1\|WP_005806388.1\|738668_739037_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NC_017294.1\|WP_005806381.1\|740220_742140_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NC_017294.1\|WP_005806409.1\|727187_728693_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_017294.1\|WP_005806400.1\|733111_734947_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_017294.1\|WP_005806407.1\|728712_729108_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NC_017294.1\|WP_005806375.1\|744435_744861_-\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005806402.1\|732434_733115_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NC_017294.1\|WP_007440472.1\|735826_736468_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_017294.1\|WP_005806403.1\|730185_732417_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_017294.1\|WP_005806369.1\|746572_746914_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005806383.1\|739781_739955_+\|hypothetical-protein	unknown	unknown	unknown
NC_017294.1\|WP_005806379.1\|742165_743581_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_017294.1\|WP_005806385.1\|739297_739723_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_017294.1\|WP_005806398.1\|734949_735813_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458

Protein	Function_ID	Function_description	E-value
NC_017294.1\|WP_005806405.1\|729113_730043_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	4.4837e-134
NC_017294.1\|WP_005806392.1\|737509_737800_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.23161e-25
NC_017294.1\|WP_005806377.1\|743642_744377_-\|DUF1624-domain-containing-protein	gnl\|CDD\|377915	pfam07786, DUF1624, Protein of unknown function (DUF1624). These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.	3.29689e-33
NC_017294.1\|WP_005806394.1\|736468_737497_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	1.5366e-175
NC_017294.1\|WP_005806373.1\|745120_745453_+\|DUF898-family-protein	gnl\|CDD\|368695	pfam05987, DUF898, Bacterial protein of unknown function (DUF898). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins.	1.01089e-08
NC_017294.1\|WP_005806388.1\|738668_739037_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	0.00590051
NC_017294.1\|WP_005806381.1\|740220_742140_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NC_017294.1\|WP_005806409.1\|727187_728693_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_017294.1\|WP_005806400.1\|733111_734947_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	4.65741e-179
NC_017294.1\|WP_005806407.1\|728712_729108_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	5.43277e-72
NC_017294.1\|WP_005806402.1\|732434_733115_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.27739e-104
NC_017294.1\|WP_007440472.1\|735826_736468_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.08899e-26
NC_017294.1\|WP_005806403.1\|730185_732417_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.64572e-58
NC_017294.1\|WP_005806379.1\|742165_743581_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NC_017294.1\|WP_005806385.1\|739297_739723_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.71808e-11
NC_017294.1\|WP_005806398.1\|734949_735813_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.07265e-150

>NC_017294.1|WP_005806392.1|737509_737800_+|CRISPR-associated-endonuclease-Cas2
MLILVTYDVGLNFDDGAKRLRKVSKICENYGIRVQNSVFECVVDNLQFEMLKSDIDKVIDKERDSVRYYNLGNSGRKKVIHIGNKHSIDVEDVIII
>NC_017294.1|WP_005806394.1|736468_737497_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNVLYVTNEDAYLSKDGEDISIRISDQKPIKIPSHNLEGIVCFGYQGASTKLMAMCAEKNIGMSFHTQFGKFLCRVQGRVSGNILLRKKQYKISDDENKSCLIAKNFIIGKLVNYKNVLNRFKRDYRDKFDENMRRSIEYLSDTIKSVSKSEDLNSLRGLEGIGSKYYFDVFDNLILVDNKSFRFDSRNKRPPLDRVNALLSFVYVILSHDIESSLESVGLDPQAGFLHRDRPGRSGLALDMMEELRSYLCDRFVLKLINTRVIKENDFIVKENGSVFILEDARKNILTAWQKRKKDFIIHPFLNEKIEVGLIPYVQSLLLARYLRGDLEEYPPYLMK
>NC_017294.1|WP_007440472.1|735826_736468_+|CRISPR-associated-protein-Cas4
MISGIQHFIFCPRQWALIHIEQIWEDNVRTFNGHKFHKKVDDPYIFEKRGEIIISRSLPLISHKLSVKGISDCVEFHMRNDNLGAKLVGRNGSYDVIPIEYKVGDIKKDDSDISQLCIQAICLEEMFDTRIEKGYLYYGKLRRRVEVNFTNELRENIKELVEKMRYYFDNGVTPKARYKKQCINCSLYDICLPKLNCSYSKVKNYIDSYVEDI
>NC_017294.1|WP_005806398.1|734949_735813_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLLSKRYEFVILFDVENGNPNGDPDSGNMPRIDPETGHGIVTDVCIKRKIRNYIEVVEGERQGFDIYVKNGAVLNEQHRKAYEAFELKPENKKLPKDEKLAKELTGYMCKNFYDIRSFGAVMSNEVNCGQVRGPIQLNFGRSIDPIFSQDLTITRCAVTNMKDLEKGQTMGRKQIVPYALYRMEGYVSAHLAQKVTGFNEEDLNILWQAIINMFEYDRSASHGKMATRKLYVFEHETALGNAPSHKLFDLIEVERKDKSKPSRHFNDYEISIDRDSLPKGVDLIEKL
>NC_017294.1|WP_005806400.1|733111_734947_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKELVDCYDLMVNSDKFEVSDSNFSNEKVSFKITIDEDGLITKIIDLREGSGAKKKTILVNVPYQSGRTSGIKPYFLCDNAKYFFGYEIDSKSLELKRCDQHIEASKNLHMEILENSYSKYKLILERFFDNHDKNLEIIKEKDPEVLKGGSIILRLKDDMKCIHEQGEVKKAFALYRQNKFENVEEVRGTCLINGDSNAPIAKIHKTIKGVSGSSISGAMIVSFNASSFESYGKSQGYNASISTENEFKYTTALNKLLSTDDNNMYLSGNTIVFWSSKLGAEEEQIIPAFMKDDDEVEDDNGETGGAKYNQEGIDKIESIIKLIKQGKTVNVDRINLDDSVNMYVLGLYGSRSRIFVRFWFKNSLGDFIKLTNKHFEDTKLKKKRKFSKKDFIYEEVGVKLSSILKTITPYGKSQNTPKTLINSLFKSILTGGVYPISIYNKILERIRAESGEDFAINHTRISFIKGYLKRYYRLNNLKDKEEEVTVSLNKESTNIAYNLGRIFAILEKIQMDSSNGATNIREKYLSSASSTPKSIFPNLLNLAQYHIAKIKKEDGKNFNYYDKVIGEILLNVNEFPAVFSSDEQGMFILGYYHQREDIYTSKKDKEEN
>NC_017294.1|WP_005806402.1|732434_733115_+|type-I-C-CRISPR-associated-protein-Cas5
MGFTLRVWGDYACFTRPEMKVERVSYDVITPSAARAIFEAIHWKPAIRWVIDEINVIKPIKFQTIMRNEVESVMSTQSIKKSINNKEEQFYIDSNKVRQQRNSMVLKDVEYIIKAHFEMTKHAGGSDDEKKHYNIFLRRARNGECFSQPYFGCREFSCNFELLENEDLPLNIQETRDLGWMLYDIDFVKKGDSYKGVKEYNPKFFRAEMIKGKVTIPKNLQMEVNK
>NC_017294.1|WP_005806403.1|730185_732417_+|CRISPR-associated-helicase/endonuclease-Cas3
MKYTEKLARRIEKEDGKIEYQKLIDHICGVSEFSEEFVSKFFLKNSGKILSILHDLGKYSDEFQDRIRGANIRVDHSTAGAIICDDLEKEFKGRGEYVIYKIFKYIIIGHHSGLLNYGTEMDDEGTISSRLNKRDILCDFSDWENEISIDDIKQINFSEEVLGFFKNNFSVQMLIRFLFSSLVDSDRLDAQRFVEGENSIVNSKKLMSLEEMLNVFNDFMKSKRLQESDNPINLIRNEIFNDCINKSRGDRGFYSLCVPTGGGKTLSSLGFALNHAKQNGHDRIIYSLPFTSIIEQNARVYSEIFGEENVLEHHCNFSFSNEIGEDEYSENQLKYKLAIENWDMPLIVTTNVQLFESMYSNKPSSARKLHNIYNSIIILDEAQVIPNEYLKPCIKALEELVRNYSCTVLFCTATQPEFKKNGLIENFDVVEIIDDTYKLFDDLKRVSGKFIGKKSVEDICNEMNSHKQVLTIVNTKKHAKEIFENLGESEGNFHLSTNMYPNHRKEVIKIIRERLKNGEECRVVSTQLIEAGVDVDFPVVFRSIAGIDSIVQAAGRCNREGKQKNSTVYVFKPEEESHLGLGYLKLTSQIGEGIIDDFEDFLSIDAISKYFFELFIDTDHRQDKHKILKMINKHKKLEINYDFREINDEFRFIENLGAQVIVPINEGEKFLNILKYSNRGVKSVLRKLSGCSINIPNYILRELLRDGCVEQFSDDIFILKNIGMYDLKIGFDKDNLKNYEYII
>NC_017294.1|WP_005806405.1|729113_730043_-|ribokinase
MNKVCVLGSLNMDLVLKVNDIPKIGETILSNSYEKIAGGKGANQAIAAKRCGADVSMIAKIGKDENGRILKGKLKEDGIDVSCIFEDEQNPTGLALIMVNKNGNNSIIVVPGSNMKINDSEINKSISKIKESDILIAQFETNEEMTLKSFQKAKEFNKITILNPAPAKKIDIELLKLTDIIIPNETEAEVLTRIKITSIDDAKRAGKFFINQGVKFAIITLGENGALIIGNDFYELVKSFKVNAVDTTAAGDSFIGALSSKLNFKNLTRETLKESVYFGNKVSSITVQRKGAQPSIPYLEEVKKIYKEN
>NC_017294.1|WP_005806407.1|728712_729108_-|D-ribose-pyranase
MKKTCLLNNSISSVISKMGHTDMIAIGDCGLPIPKETKRIDLALTKGIPSFLDTLKTTLTELEIEEIIIAKETEETSPKIFNEIKNLIGNAKITFVSHEIFKTNLKECKAVIRTGEQTPYANIILKSGVVF
>NC_017294.1|WP_005806409.1|727187_728693_-|sugar-ABC-transporter-ATP-binding-protein
MNTRIPMLKMEGVSKIFPGVKALDNINITAYKGEVTALMGENGAGKSTLMKILSGVYQKDEGKIFIEGEEAHIKNIKSAEEYGVTIIHQEMSLINNLTIAENIFLGNEKFNKFTKKINKKLLVERSILFLDQIGCNLDPNKLVSSINVGEKQMVEIAKALTKNARIIIMDEPTTALTKIETQNLFKVIENLKKKGIAIIYISHRMEEIFAICDRVEVLRDGKYAGNALIKEIDNNKLIAMMVGRTIEEQFPYKKIEKGKVLLEVSNLTSKVGINNISFTVREGEIVGIAGLMGAGRTELAKTIFGYYKKEKGTIKLKGKRINIKNIQQAINNGICYLSEDRKKEGCILGLSVEDNMILSNLCKYENGFKIINKNKTKKDIDFYIKKLNIKTPNKDQLIKNLSGGNQQKVILAKWLLLSPDILIIDEPTRGIDVGAKKEIYELLNELKESGKAIIMISSDLPEVLGISDRILVMSEGKITGELNREEATQEKIMKLSVGINQ
>NC_017294.1|WP_005806388.1|738668_739037_+|DUF2442-domain-containing-protein
MDKKIKYYLDRGMDYDMAKYFATAERTIIEVIPNNDYTLTLKFDNDEIRKYDCNDLIEKGTVFEFLSDYDNFKRVYLDESNVVSWDKDPNIDSNLNWSNKVDLSSDTLYVKSIPQDLGKMKL
>NC_017294.1|WP_005806385.1|739297_739723_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MIVSYPAVFYKYQEGNYGVSLPDFDVATCGEDLEDAIKMAIECLAGEIKWCKEQGEEIPKPTLDLDLVEVDERDEENNYVEFIKQIITVDADEYAKKYFNKSVKKNLTIPKWLNDEAVALNINFSKVLQKALLDEINRLKD
>NC_017294.1|WP_005806383.1|739781_739955_+|hypothetical-protein
MKSCIALFYLILKTLLALTIFSFTGFGTYNFGINDIRVVQALTIYYIIRVNLYILNK
>NC_017294.1|WP_005806381.1|740220_742140_+|PTS-glucose-transporter-subunit-IIA
MDYKKIAGDIIQNVGGKENIKGMTYCFTRLRFVLKDSKKVDKAVIERLEGVISVVIAGGQFQVVLGNKVTKIHDAAVELLGGEVGESGDTSHVSAEKQSIGNVIIQKLGEIFTPLVPAIAAAGLIKGLLAAAAKIPGFDSTASTYVIMNTASNIIFYFMPIFLAFTTAKALKCNTIIAMMLGGFICHPTIDAIVQDVATKSNIFGLPVIKMAFTVGESSRVFAYTESVIPIILGVIVLSFLEKFLKKYVPEILQLILVPGISLIVMVPVMLVVVGPVGIYVGYIVQFLYTALYGFSPILGGIIVGGLWGICVIFGAHRALLPIGLNDVALTGTNTLMCFAGSANFAQAGAALGVMFKTKSANLKQVSASAALSAWLVGVTEPAVYGCNLRLKKPMICAVIAGAVGGAIMGIGHAVNTGFANNGILTIMSYWGEGTSFGQFVAYILGICVAFFGSAVLTYIVGFEDDPIATPVVQSAIDTPTDNVTEVSGDTVLVSPVKGSAVALSQVDDKVFSTGMLGQGYGVIPTEGKIVAPADCQIQVIHNTNHAVGLLTDDGVELLIHVGIDTVKLNGTHFTRVSKDGTHVAKGTTLLTFDIDKIKAAGYDTTVVIIVTNSDDYSEIRTITTGQADSSKNAIAVVR
>NC_017294.1|WP_005806379.1|742165_743581_+|glycoside-hydrolase-family-1-protein
MKQKFPENFLWGASSSAFQIEGGWDEDGKGKTVADFNSFKRSDKQADTKVASDFYHHWKEDIAMMKELGMQIYRFSLSWARIVPDGDGDINAAGIDFYNKVIDELIANGIQPFVTLYHFDLPYALVEKYNGWECRNCAFAFERYARVCFKEFGDRVKYWQVINEQNLMIRVNERMNIYVDDLWEADRIRAQMDYHMFLGHALAVNSCHELVEGGKVGPAVSSTCTYPLTNKPEDVWAAKMNDWLKTNYCLEMHINGEYPGYYMRYLRERNIVPKMEPEDVAILKSAKIDYIALNYYRTLCASYLPASEEHPIGERVYRDNEVDFDQYGYCRNEKNANLSASEYGAQIDPMGLRIVLNEYYRRYHLPMIITENGLGMADVLTEDGKVHDSYRIDYIRSHIQACANAIEDGVELIGYSPWSVMDLLSSHQGFRKRYGFIYVDRDDFDVKQLRRIKKDSFYWYKHVIETNGEEL
>NC_017294.1|WP_005806377.1|743642_744377_-|DUF1624-domain-containing-protein
MNEKRYFILDGIRGFAVINMIIYHFIWDLVYIFRFDIPWFESEISYIWQQFICCTFIFISGFCEPLGTRKLKRGIIILGLGILIEIVTMIATPENRVRFGILTLLGSCAILIIPAKKFLEKFPSIFGLILSIALFLLTKNINDGYLGFNNLNLIKLPSNLYKNSITTYLGFPMPNFYSTDYFSLMPWIFLYISGYFSYQIFKRQGFLKYLKISKIKSLEWIGRNSLALYVIHQPLIYFLIILFL
>NC_017294.1|WP_005806375.1|744435_744861_-|hypothetical-protein
MNTLRKIIKNTIIACIPFTILSTINANSSPLRRSKSLPNITFNDMFNENFRKFFEFGQPIMTTRTSASVSNLNDTDDFQKLRYEMIFSNNARAMRNGVFPQPMWKLYLDESDFVDIYTGLKMPKVNNATISNTTKVQYFFE
>NC_017294.1|WP_005806373.1|745120_745453_+|DUF898-family-protein
MRPWYFEESEFDGKLAELLGINILSFLLIIVTLGIGFSWAMCMKEKYRINHTIINGQRLSFVGRGGDLFVNWLKWILLTIITLGIYGFLLSIKLRQWKVRNTIFDSYKVG
>NC_017294.1|WP_005806371.1|745928_746534_+|hypothetical-protein
MLIKLLIMMFIVAGIGVSTVSCGSNNNTNSTSNVMNNQDSTNVEDKVSEPKKEDKKDMTSAELDEALNNQPVKIIRTEYISQEDQFLRPDLLSAVFQNDSGVDIKNAVLGYVAWDSNNLPVKIQSQYDFTDGEYFKKVNYSDVNLVNGASYGENGGLSIGNDNIAKFKAIVVSYTDFDGNIWDNPLLEEFQKLYEDKKLAE
>NC_017294.1|WP_005806369.1|746572_746914_+|hypothetical-protein
MKRSKLLLVSAILSTLYLIYIFIYFFNGISSSSNGAEALGVGLAGVLVAPHILFVGLGVLFNWIGWGMNKRWAALVSGILYFVSIFLMILYAIFVIVQVILCFVGYAKMKKEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MF547663	Clostridioides phage LIBA2945, complete genome	127087-127120	5	0.853
NC_017294_3	3.8\|738466\|33\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738466-738498	33	AP014418	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S42-C120, * SEQUENCING IN PROGRESS *, 4 ordered pieces	19359-19391	5	0.848
NC_017294_3	3.8\|738466\|33\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738466-738498	33	AP013659	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S34-C213, * SEQUENCING IN PROGRESS *	1663-1695	5	0.848
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MF547662	Clostridioides phage LIBA6276, complete genome	128821-128854	6	0.824
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP016330	Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence	26191-26224	7	0.794
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP053966	Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence	61234-61267	7	0.794
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	552747-552780	7	0.794
NC_017294_1	1.2\|114867\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114867-114900	34	NZ_CP030046	Enterococcus faecalis strain C54 plasmid pC54, complete sequence	54884-54917	7	0.794
NC_017294_1	1.2\|114867\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114867-114900	34	NZ_CP041739	Enterococcus faecalis EnGen0107 strain B594 plasmid p1, complete sequence	38245-38278	7	0.794
NC_017294_1	1.2\|114867\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114867-114900	34	NZ_CP030043	Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence	35409-35442	7	0.794
NC_017294_2	2.4\|117198\|33\|NC_017294\|CRISPRCasFinder,CRT	117198-117230	33	NZ_CP015635	Borrelia turicatae strain BTE5EL plasmid lp44	24240-24272	7	0.788
NC_017294_2	2.4\|117198\|33\|NC_017294\|CRISPRCasFinder,CRT	117198-117230	33	NZ_CP019364	Borrelia turicatae 91E135 isolate Oz1 plasmid lpB34, complete sequence	22689-22721	7	0.788
NC_017294_3	3.4\|738201\|33\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738201-738233	33	MH618488	Enterococcus phage vB_EfaS_HEf13, complete genome	48959-48991	7	0.788
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT074137	Bacteroides phage DAC16, complete genome	110915-110948	7	0.794
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT074142	Bacteroides phage DAC23, complete genome	114749-114782	7	0.794
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT074141	Bacteroides phage DAC22, complete genome	115010-115043	7	0.794
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT074146	Bacteroides phage SJC03, complete genome	103948-103981	7	0.794
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT074139	Bacteroides phage DAC19, complete genome	114812-114845	7	0.794
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT074140	Bacteroides phage DAC20, complete genome	114811-114844	7	0.794
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP016330	Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence	26207-26240	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009638	Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence	34933-34966	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_KU525621	Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence	47465-47498	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NC_014332	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence	48239-48272	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NC_012577	Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence	46108-46141	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP015778	Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence	47680-47713	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP018905	Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence	48034-48067	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP023003	Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence	77889-77922	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_AP019733	Bacillus anthracis strain PCr plasmid PCr-pXO2	83686-83719	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_AP018445	Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence	47685-47718	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP029325	Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence	35979-36012	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NC_012655	Bacillus anthracis str. A0248 plasmid pXO2, complete sequence	48723-48756	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NC_007323	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence	47680-47713	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP010854	Bacillus anthracis strain A1144 plasmid pXO2, complete sequence	47848-47881	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP007617	Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence	23267-23300	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP008848	Bacillus anthracis strain HYU01 plasmid pX02, complete sequence	47612-47645	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP006744	Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence	47645-47678	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_AP014835	Bacillus anthracis strain Shikan-NIID plasmid pXO2	47677-47710	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP029807	Bacillus anthracis strain London_499 plasmid pX02, complete sequence	47678-47711	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NC_002146	Bacillus anthracis plasmid pXO2, complete sequence	48178-48211	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NC_017727	Bacillus anthracis str. H9401 plasmid BAP2, complete sequence	47687-47720	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009314	Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence	54535-54568	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP014178	Bacillus anthracis strain Stendal plasmid pXO2, complete sequence	47680-47713	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009475	Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence	70194-70227	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009900	Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence	32724-32757	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009339	Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence	66970-67003	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009462	Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence	75281-75314	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009698	Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence	44893-44926	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009329	Bacillus anthracis strain K3 plasmid 2, complete sequence	81961-81994	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP001972	Bacillus anthracis str. A16 plasmid pXO2, complete sequence	47678-47711	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP047133	Bacillus anthracis str. BF1 plasmid pXO2, complete sequence	47621-47654	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK387337	Vibrio phage ValB1MD, complete genome	90886-90919	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009695	Bacillus anthracis strain RA3 plasmid pXO2, complete sequence	56093-56126	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009542	Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence	81654-81687	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP010320	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence	52830-52863	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009326	Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence	81623-81656	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009979	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence	25797-25830	8	0.765
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP053901	Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence	1952-1985	8	0.765
NC_017294_1	1.2\|114867\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114867-114900	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2227121-2227154	8	0.765
NC_017294_2	2.3\|117131\|35\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	117131-117165	35	KY744233	Sulfolobus islandicus rod-shaped virus 5, partial genome	34948-34982	8	0.771
NC_017294_2	2.3\|117131\|35\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	117131-117165	35	KY744235	Sulfolobus islandicus rod-shaped virus 6, partial genome	34309-34343	8	0.771
NC_017294_2	2.3\|117131\|35\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	117131-117165	35	KY744234	Sulfolobus islandicus rod-shaped virus 11, partial genome	32486-32520	8	0.771
NC_017294_2	2.3\|117131\|35\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	117131-117165	35	KY744231	Sulfolobus islandicus rod-shaped virus 4, partial genome	34303-34337	8	0.771
NC_017294_2	2.4\|117198\|33\|NC_017294\|CRISPRCasFinder,CRT	117198-117230	33	NZ_CP014792	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence	48510-48542	8	0.758
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250021	Prevotella phage Lak-B2, complete genome	244677-244710	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250024	Prevotella phage Lak-B5, complete genome	238706-238739	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250028	Prevotella phage Lak-B9, complete genome	243587-243620	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250023	Prevotella phage Lak-B4, complete genome	244580-244613	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250025	Prevotella phage Lak-B6, complete genome	241886-241919	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250022	Prevotella phage Lak-B3, complete genome	241901-241934	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250027	Prevotella phage Lak-B8, complete genome	243311-243344	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250026	Prevotella phage Lak-B7, complete genome	242369-242402	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250020	Prevotella phage Lak-B1, complete genome	243567-243600	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	3671-3704	9	0.735
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	3644-3677	9	0.735
NC_017294_2	2.3\|117131\|35\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	117131-117165	35	NC_007103	Bacillus cereus E33L plasmid pE33L466, complete sequence	12003-12037	9	0.743
NC_017294_2	2.3\|117131\|35\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	117131-117165	35	NZ_CP009967	Bacillus cereus E33L plasmid pBCO_1, complete sequence	310136-310170	9	0.743
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	MT774393	CrAssphage cr127_1, complete genome	20422-20455	9	0.735
NC_017294_3	3.8\|738466\|33\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738466-738498	33	NZ_CP020479	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence	3004-3036	9	0.727
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP009638	Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence	34925-34958	10	0.706
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP053966	Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence	61226-61259	10	0.706
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	370602-370635	10	0.706
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	AP014122	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4-MedDCM-OCT-S43-C68, * SEQUENCING IN PROGRESS *	2344-2377	10	0.706
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	AP014141	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S46-C72, * SEQUENCING IN PROGRESS *	2344-2377	10	0.706
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	39706-39739	10	0.706
NC_017294_1	1.2\|114867\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114867-114900	34	MN693807	Marine virus AFVG_250M375, complete genome	29242-29275	10	0.706
NC_017294_3	3.8\|738466\|33\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738466-738498	33	NZ_CP009044	Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence	44089-44121	10	0.697
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	42334-42367	11	0.676
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250029	Prevotella phage Lak-C1, complete genome	521253-521286	11	0.676
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250016	Prevotella phage Lak-A1, complete genome	13801-13834	11	0.676
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	MK250019	Prevotella phage Lak-A2, complete genome	472906-472939	11	0.676
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	158653-158686	11	0.676
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	158693-158726	11	0.676
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	479175-479208	11	0.676
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	248488-248521	11	0.676
NC_017294_3	3.5\|738266\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	738266-738299	34	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	342173-342206	11	0.676
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	AP014140	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S37-C62, * SEQUENCING IN PROGRESS *	31255-31288	13	0.618
NC_017294_1	1.1\|114801\|34\|NC_017294\|PILER-CR,CRISPRCasFinder,CRT	114801-114834	34	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	285485-285518	14	0.588

1. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 5, identity: 0.853

atcaatatataaatttatatttttat-agccatag	CRISPR spacer
atcaatatgtaaatttacatttttttgagctata-	Protospacer
********.********.****** * ***.***

2. spacer 3.8|738466|33|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to AP014418 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S42-C120, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 5, identity: 0.848

-ttgtgccaagttataaaactttttaaaaataag	CRISPR spacer
attgag-caagttgtaaaactttataaaaataat	Protospacer
 *** * ******.********* *********

3. spacer 3.8|738466|33|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to AP013659 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S34-C213, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.848

-ttgtgccaagttataaaactttttaaaaataag	CRISPR spacer
attgag-caagttgtaaaactttataaaaataat	Protospacer
 *** * ******.********* *********

4. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 6, identity: 0.824

atcaatatataaatttatatttttata-gccatag	CRISPR spacer
atcaatatgtaaatttacatttttttgtgctata-	Protospacer
********.********.****** *. **.***

5. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016330 (Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ataaatttataaatttatatttttataaaagtat	Protospacer
** *** ********************.  .**

6. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053966 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.794

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ataaaaatataaatttatatttttataaaagtat	Protospacer
** ** *********************.  .**

7. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.794

atcaatatataaatttatatttttatagccatag-----	CRISPR spacer
atcaatctataaatttatttttttat-----tagaaagt	Protospacer
****** *********** *******     ***

8. spacer 1.2|114867|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030046 (Enterococcus faecalis strain C54 plasmid pC54, complete sequence) position: , mismatch: 7, identity: 0.794

ataaaagaactatctaatttattaaaa-aaataag	CRISPR spacer
acaaaagaacaatttaatttattaaagttaatga-	Protospacer
*.******** **.************.  ***.*

9. spacer 1.2|114867|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041739 (Enterococcus faecalis EnGen0107 strain B594 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.794

ataaaagaactatctaatttattaaaa-aaataag	CRISPR spacer
acaaaagaacaatttaatttattaaagttaatga-	Protospacer
*.******** **.************.  ***.*

10. spacer 1.2|114867|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030043 (Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence) position: , mismatch: 7, identity: 0.794

ataaaagaactatctaatttattaaaa-aaataag	CRISPR spacer
acaaaagaacaatttaatttattaaagttaatga-	Protospacer
*.******** **.************.  ***.*

11. spacer 2.4|117198|33|NC_017294|CRISPRCasFinder,CRT matches to NZ_CP015635 (Borrelia turicatae strain BTE5EL plasmid lp44) position: , mismatch: 7, identity: 0.788

agtcctttcttatttgtgaattatttgatataa	CRISPR spacer
atgttgttcttatttgtgaattgtttgatatat	Protospacer
*  .. ****************.*********

12. spacer 2.4|117198|33|NC_017294|CRISPRCasFinder,CRT matches to NZ_CP019364 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpB34, complete sequence) position: , mismatch: 7, identity: 0.788

agtcctttcttatttgtgaattatttgatataa	CRISPR spacer
attttgttcttgtttgtgaattgtttgatatat	Protospacer
* *.. *****.**********.*********

13. spacer 3.4|738201|33|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MH618488 (Enterococcus phage vB_EfaS_HEf13, complete genome) position: , mismatch: 7, identity: 0.788

attaaataacagtattaaggatggtttttactc	CRISPR spacer
gtataataacagttttaaggatggttattacaa	Protospacer
.*  ********* ************ ****

14. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

15. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT074142 (Bacteroides phage DAC23, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

16. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taattgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

17. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taattttatacaagataaaatattattttccttt	Protospacer
*   *.*************** ********. **

18. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

19. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

20. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016330 (Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ataaatttataaatttatatttttatattttaat	Protospacer
** *** ******************** ..  *

21. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009638 (Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ataaaaatataaatttatatttttataaaaaata	Protospacer
** ** *********************.  *  .

22. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU525621 (Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

23. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_014332 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

24. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_012577 (Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

25. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015778 (Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

26. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018905 (Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

27. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023003 (Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

28. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019733 (Bacillus anthracis strain PCr plasmid PCr-pXO2) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

29. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018445 (Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

30. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029325 (Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

31. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_012655 (Bacillus anthracis str. A0248 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

32. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_007323 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

33. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010854 (Bacillus anthracis strain A1144 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

34. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007617 (Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

35. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008848 (Bacillus anthracis strain HYU01 plasmid pX02, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

36. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006744 (Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

37. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014835 (Bacillus anthracis strain Shikan-NIID plasmid pXO2) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

38. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029807 (Bacillus anthracis strain London_499 plasmid pX02, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

39. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_002146 (Bacillus anthracis plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

40. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_017727 (Bacillus anthracis str. H9401 plasmid BAP2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

41. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009314 (Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

42. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014178 (Bacillus anthracis strain Stendal plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

43. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009475 (Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

44. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009900 (Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

45. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009339 (Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

46. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009462 (Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

47. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009698 (Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

48. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009329 (Bacillus anthracis strain K3 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

49. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP001972 (Bacillus anthracis str. A16 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

50. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047133 (Bacillus anthracis str. BF1 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

51. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK387337 (Vibrio phage ValB1MD, complete genome) position: , mismatch: 8, identity: 0.765

atcaatatataaatttatatttttatagccatag	CRISPR spacer
aaaagtttctatatttatattttaatagccatat	Protospacer
*  *.* * ** *********** *********

52. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009695 (Bacillus anthracis strain RA3 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

53. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009542 (Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

54. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010320 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

55. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009326 (Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

56. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009979 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatat-ataaatttatatttttatagccatag	CRISPR spacer
-tcatcttgataaatttctatttttatatccatca	Protospacer
 *** . * ******** ********** **** .

57. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053901 (Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence) position: , mismatch: 8, identity: 0.765

atcaatatataaatttatatttttatagccatag	CRISPR spacer
atttatatattaatttatttttttatagaaaaac	Protospacer
**. ****** ******* *********  * *

58. spacer 1.2|114867|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.765

ataaaagaactatctaatttattaaaaaaataag	CRISPR spacer
ataaaagaactatctacttcattagcacgatgaa	Protospacer
**************** **.****. * .**.*.

59. spacer 2.3|117131|35|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to KY744233 (Sulfolobus islandicus rod-shaped virus 5, partial genome) position: , mismatch: 8, identity: 0.771

ttttcaatattattatccatatctaaat-tatagta	CRISPR spacer
ctttgaatattattatcaatatctaaccatgcagt-	Protospacer
.*** ************ ******** . *..***

60. spacer 2.3|117131|35|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to KY744235 (Sulfolobus islandicus rod-shaped virus 6, partial genome) position: , mismatch: 8, identity: 0.771

ttttcaatattattatccatatctaaat-tatagta	CRISPR spacer
ctttgaatattattatcaatatctaaccatgcagt-	Protospacer
.*** ************ ******** . *..***

61. spacer 2.3|117131|35|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to KY744234 (Sulfolobus islandicus rod-shaped virus 11, partial genome) position: , mismatch: 8, identity: 0.771

ttttcaatattattatccatatctaaat-tatagta	CRISPR spacer
ctttgaatattattatcaatatctaaccatgcagt-	Protospacer
.*** ************ ******** . *..***

62. spacer 2.3|117131|35|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to KY744231 (Sulfolobus islandicus rod-shaped virus 4, partial genome) position: , mismatch: 8, identity: 0.771

ttttcaatattattatccatatctaaat-tatagta	CRISPR spacer
ctttgaatattattatcaatatctaaccatgcagt-	Protospacer
.*** ************ ******** . *..***

63. spacer 2.4|117198|33|NC_017294|CRISPRCasFinder,CRT matches to NZ_CP014792 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence) position: , mismatch: 8, identity: 0.758

agtcctttcttatttgtgaattatttgatataa	CRISPR spacer
atgttgttctaatttgtgaattatttgctatat	Protospacer
*  .. **** **************** ****

64. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

65. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

66. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

67. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

68. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

69. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

70. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

71. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

72. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataatatataaatctataattttatagttatta	Protospacer
  .***********.**** ********..** .

73. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ctgaatatatataattatatttttatatattcag	Protospacer
 * ******** * *************  . .**

74. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 9, identity: 0.735

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ctgaatatatataattatatttttatatattcag	Protospacer
 * ******** * *************  . .**

75. spacer 2.3|117131|35|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 9, identity: 0.743

ttttcaatattattatccatatctaaattatagta	CRISPR spacer
tttgatttattattatccttatctaaattctaacc	Protospacer
***    *********** ********** **..

76. spacer 2.3|117131|35|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttcaatattattatccatatctaaattatagta	CRISPR spacer
tttgatttattattatccttatctaaattctaacc	Protospacer
***    *********** ********** **..

77. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 9, identity: 0.735

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
aaaatctataaaagataagattttatttgataga	Protospacer
   ******* *******.*********  **

78. spacer 3.8|738466|33|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020479 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence) position: , mismatch: 9, identity: 0.727

ttgtgccaagttataaaactttttaaaaataag	CRISPR spacer
aagaaacaagttttaaaacttttgaaaaatatc	Protospacer
  * . ****** ********** *******

79. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009638 (Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence) position: , mismatch: 10, identity: 0.706

--------atcaatatataaatttatatttttatagccatag	CRISPR spacer
atacttttataaaaatataaatttatatttttat--------	Protospacer
        ** ** ********************

80. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053966 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.706

--------atcaatatataaatttatatttttatagccatag	CRISPR spacer
tattttttataaaaatataaatttatatttttat--------	Protospacer
        ** ** ********************

81. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 10, identity: 0.706

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tttaatatataaaattatatttttatatttgact	Protospacer
 *.********** ************* ...

82. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to AP014122 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4-MedDCM-OCT-S43-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

atcaatatataaatttatatttttatagccatag	CRISPR spacer
caaaatatatatatttatatatttatatatgtat	Protospacer
   ******** ******** ******  ..**

83. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to AP014141 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S46-C72, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

atcaatatataaatttatatttttatagccatag	CRISPR spacer
caaaatatatatatttatatatttatatatgtat	Protospacer
   ******** ******** ******  ..**

84. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 10, identity: 0.706

atcaatatataaatttatatttttatagccatag	CRISPR spacer
aacaatatataaatttctatatttatctttaatt	Protospacer
* ************** *** *****  ..*

85. spacer 1.2|114867|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MN693807 (Marine virus AFVG_250M375, complete genome) position: , mismatch: 10, identity: 0.706

ataaaagaactatctaatttattaaaaaaataag	CRISPR spacer
ataaaagaactatctacttttttacccttcaatg	Protospacer
**************** *** ***       * *

86. spacer 3.8|738466|33|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009044 (Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence) position: , mismatch: 10, identity: 0.697

ttgtgccaagttataaaactttttaaaaataag	CRISPR spacer
aaagagaaagttagaaaattttttaaaaatatg	Protospacer
  . .  ****** ****.************ *

87. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 11, identity: 0.676

atcaatatataaatttatatttttatagccatag	CRISPR spacer
tataataaatgaatttatatttttatattgagtt	Protospacer
  .**** **.**************** . *

88. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 11, identity: 0.676

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ttcaatatataaatctaaatttttaatatagaaa	Protospacer
 *************.** *******  .. . *.

89. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 11, identity: 0.676

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ttcaatatataaatctaaatttttaatatagaaa	Protospacer
 *************.** *******  .. . *.

90. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 11, identity: 0.676

atcaatatataaatttatatttttatagccatag	CRISPR spacer
ttcaatatataaatctaaatttttaatatagaaa	Protospacer
 *************.** *******  .. . *.

91. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

92. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

93. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

94. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

95. spacer 3.5|738266|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

96. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to AP014140 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4A-MedDCM-OCT-S37-C62, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 13, identity: 0.618

--------atcaatatataaatttatatttttatagccatag	CRISPR spacer
atacatatataaatatataaatatatatattttg--------	Protospacer
        ** *********** ***** ***

97. spacer 1.1|114801|34|NC_017294|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 14, identity: 0.588

--atcaatatataaatttatatttttatagccatag	CRISPR spacer
tatatactatattaatataaatttatatatacta--	Protospacer
    .* ***** *** ** **** ****  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

111269 : 153639

Clostridium_phage(55.56%)

portal,terminase,plate,tail,capsid,integrase

attL 111154:111198|attR 156444:156488

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
111154:111198	attL	NA	NA	NA	NA
WP_005807580.1\|111269_112460_-\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	2.1e-100	49.9
WP_005807578.1\|112694_113999_+	AAA family ATPase	V9QJ85	Oenococcus_phage	9.4e-49	32.2
WP_005807576.1\|113999_114587_+	hypothetical protein	V9QKG0	Oenococcus_phage	6.8e-07	32.7
WP_005807574.1\|115244_115496_-	peptidase S24	A0A1J0MFC5	Staphylococcus_phage	4.2e-06	39.0
WP_005807572.1\|115838_116573_+	DUF3644 domain-containing protein	A0A220NQR4	Corynebacterium_phage	1.1e-17	35.8
WP_005807569.1\|117315_117822_-	hypothetical protein	NA	NA	NA	NA
WP_005807568.1\|117858_118473_-	helix-turn-helix domain-containing protein	A0A1B2APZ3	Phage_Wrath	7.3e-28	37.6
WP_005807564.1\|118647_118866_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005807562.1\|118872_119088_-	helix-turn-helix transcriptional regulator	A0A1L2JY18	Aeribacillus_phage	3.8e-08	44.1
WP_005807560.1\|119206_119407_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005807558.1\|119461_119680_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005807556.1\|119684_119864_+	hypothetical protein	NA	NA	NA	NA
WP_005807554.1\|119949_120216_+	hypothetical protein	NA	NA	NA	NA
WP_005807552.1\|120232_120532_+	hypothetical protein	NA	NA	NA	NA
WP_005807550.1\|120531_121668_+	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	1.2e-97	48.2
WP_005807548.1\|121683_122244_+	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	5.2e-57	60.6
WP_005807546.1\|122243_124163_+	DNA polymerase	S5M5X4	Brevibacillus_phage	1.3e-192	54.6
WP_005807544.1\|124178_126674_+	virulence-associated protein E	A0A0A7RTG3	Clostridium_phage	5.5e-199	44.7
WP_005807543.1\|126968_127277_+	VRR-NUC domain-containing protein	A0A1W6JQA8	Corynebacterium_phage	2.8e-12	40.4
WP_005807541.1\|127228_128569_+	DEAD/DEAH box helicase	A0A1S7FYY5	Listeria_phage	4.1e-132	53.8
WP_007440107.1\|128581_129007_+	hypothetical protein	NA	NA	NA	NA
WP_005807536.1\|128993_129206_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007440106.1\|129283_130000_+	SHOCT domain-containing protein	X5JB37	Clostridium_phage	5.2e-33	37.5
WP_005807533.1\|130163_130586_+\|terminase	terminase small subunit	A7J290	Streptococcus_phage	5.8e-24	45.6
WP_005807531.1\|130582_131014_+	hypothetical protein	NA	NA	NA	NA
WP_005807529.1\|131028_132276_+\|terminase	PBSX family phage terminase large subunit	A0A0M4R5F3	Bacillus_phage	3.4e-141	57.7
WP_007440341.1\|132316_132796_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_007440342.1\|132836_133091_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_005807523.1\|133186_134575_+\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	1.4e-106	42.5
WP_005807521.1\|134567_136151_+\|capsid	minor capsid protein	A0A0A8WIE7	Clostridium_phage	6.6e-105	51.9
WP_005807519.1\|136154_136361_+	hypothetical protein	NA	NA	NA	NA
WP_007440347.1\|136393_136735_+	hypothetical protein	NA	NA	NA	NA
WP_005807517.1\|136820_137498_+	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	9.3e-08	29.4
WP_005807516.1\|137694_138294_+	phage scaffolding protein	A0A1Z1LZK8	Bacillus_phage	3.0e-10	31.0
WP_005807514.1\|138302_139361_+	hypothetical protein	A0A0A7RTH8	Clostridium_phage	1.7e-93	51.5
WP_005807512.1\|139367_139748_+	hypothetical protein	X5JAJ0	Clostridium_phage	6.3e-14	39.5
WP_005807509.1\|139723_140098_+	hypothetical protein	X5JAV9	Clostridium_phage	2.3e-16	44.7
WP_005807507.1\|140097_140505_+	HK97 gp10 family phage protein	A0A0A7RVN8	Clostridium_phage	4.7e-15	33.1
WP_005807505.1\|140501_140930_+	hypothetical protein	A0A0A8WJT3	Clostridium_phage	1.3e-20	36.8
WP_005807504.1\|140934_141123_+	hypothetical protein	A0A0A7RTG1	Clostridium_phage	2.0e-05	61.5
WP_005807500.1\|141124_142426_+\|tail	phage tail sheath subtilisin-like domain-containing protein	X5JAJ1	Clostridium_phage	5.5e-150	59.0
WP_005807498.1\|142437_142914_+\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	3.4e-57	69.1
WP_005807496.1\|142915_143347_+	hypothetical protein	X5JAB6	Clostridium_phage	2.2e-18	35.4
WP_100181642.1\|143346_143535_+	hypothetical protein	NA	NA	NA	NA
WP_005807488.1\|146202_146904_+	hypothetical protein	X5J9Z8	Clostridium_phage	1.0e-33	47.9
WP_005807486.1\|146906_147866_+	hypothetical protein	H7BVH4	unidentified_phage	4.2e-115	61.0
WP_005807484.1\|147858_148179_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	1.2e-13	39.4
WP_005807482.1\|148175_148583_+	DUF2634 domain-containing protein	A0A0A8WJV8	Clostridium_phage	8.8e-30	48.6
WP_005807480.1\|148582_149653_+\|plate	baseplate J/gp47 family protein	X5JAB8	Clostridium_phage	9.0e-90	48.1
WP_005807479.1\|149639_150329_+	DUF2313 domain-containing protein	H7BVG1	unidentified_phage	8.5e-25	39.2
WP_005807478.1\|150315_151080_+	hypothetical protein	NA	NA	NA	NA
WP_007441037.1\|151084_151930_+	hypothetical protein	NA	NA	NA	NA
WP_005807474.1\|151929_153639_+\|tail	phage tail protein	A0A0C5AEQ0	Bacteriophage	4.0e-15	36.6
156444:156488	attR	NA	NA	NA	NA

DBSCAN-SWA_2

408205 : 415446

Clostridium_phage(50.0%)

terminase,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005806970.1\|408205_408628_+\|terminase	terminase small subunit	A7J290	Streptococcus_phage	1.3e-23	45.6
WP_005806968.1\|408624_409056_+	hypothetical protein	NA	NA	NA	NA
WP_005806966.1\|409071_409332_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_005806964.1\|409345_409648_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_005806962.1\|409644_410886_+\|terminase	PBSX family phage terminase large subunit	A0A0M4R5F3	Bacillus_phage	4.9e-140	57.2
WP_014518676.1\|410944_412156_+\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	3.1e-94	43.6
WP_009068478.1\|412233_413118_+\|capsid	minor capsid protein	A0A0A8WIE7	Clostridium_phage	4.7e-28	51.7
WP_005806956.1\|413121_413328_+	hypothetical protein	NA	NA	NA	NA
WP_007440347.1\|413360_413702_+	hypothetical protein	NA	NA	NA	NA
WP_005806950.1\|413851_414451_+	phage scaffolding protein	S5M9M5	Brevibacillus_phage	2.5e-12	31.6
WP_005806949.1\|414459_415446_+	ATP-binding protein	A0A0A7RTH8	Clostridium_phage	5.8e-35	44.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017294

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection