CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	7 crisprs	cas3,DEDDh,RT,DinG,csa3,WYL	5	0	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017763_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_1

285636-285773

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACATAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017763_1

>merge|NC_017763|1|285636-285773|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGGGAGGGACATAAATAAA

>NC_017763|1|1|285636-285773|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGGCAA
TGCAAGTTGGCGGGGCCCCAACATAGA	AGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGGGAGGGACATAAATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_000570067.1\|295320_295980_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_017763.1\|WP_001159765.1\|290873_291266_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000337376.1\|293003_293996_+\|linear-amide-C-N-hydrolase	unknown	unknown	gnl\|CDD\|225591
NC_017763.1\|WP_000607067.1\|278858_279560_+\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NC_017763.1\|WP_000182743.1\|287020_287935_-\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NC_017763.1\|WP_000736787.1\|294321_295269_+\|glycine-glycine-endopeptidase-LytM	unknown	unknown	gnl\|CDD\|226451
NC_017763.1\|WP_000750483.1\|287962_288367_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NC_017763.1\|WP_000975348.1\|273027_274749_+\|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|376098
NC_017763.1\|WP_000922316.1\|282417_283122_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NC_017763.1\|WP_000062639.1\|279900_282192_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|225795
NC_017763.1\|WP_000608837.1\|274892_275567_+\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940
NC_017763.1\|WP_000029204.1\|288381_289263_-\|ribose-transporter-RbsU	unknown	unknown	gnl\|CDD\|284268
NC_017763.1\|WP_000645456.1\|277569_278310_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NC_017763.1\|WP_000950281.1\|275812_277567_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_017763.1\|WP_000163986.1\|284077_285514_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NC_017763.1\|WP_000066927.1\|283270_284062_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225101
NC_017763.1\|WP_001066553.1\|291393_292770_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_017763.1\|WP_001792906.1\|278422_278866_+\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222
NC_017763.1\|WP_000031266.1\|286008_286770_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_017763.1\|WP_000757882.1\|289494_290493_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_000570067.1\|295320_295980_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.68709e-67
NC_017763.1\|WP_000337376.1\|293003_293996_+\|linear-amide-C-N-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	6.16271e-152
NC_017763.1\|WP_000607067.1\|278858_279560_+\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
NC_017763.1\|WP_000182743.1\|287020_287935_-\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	7.32816e-143
NC_017763.1\|WP_000736787.1\|294321_295269_+\|glycine-glycine-endopeptidase-LytM	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.47013e-32
NC_017763.1\|WP_000750483.1\|287962_288367_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	4.08879e-70
NC_017763.1\|WP_000975348.1\|273027_274749_+\|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	3.18504e-35
NC_017763.1\|WP_000922316.1\|282417_283122_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.13754e-62
NC_017763.1\|WP_000062639.1\|279900_282192_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	gnl\|CDD\|225795	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism].	5.48419e-178
NC_017763.1\|WP_000608837.1\|274892_275567_+\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	1.30038e-153
NC_017763.1\|WP_000029204.1\|288381_289263_-\|ribose-transporter-RbsU	gnl\|CDD\|284268	pfam06800, Sugar_transport, Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. These members are transmembrane proteins which are usually 5+5 duplications. This model recognizes a set of five TMs,.	4.46997e-117
NC_017763.1\|WP_000645456.1\|277569_278310_+\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	4.37999e-152
NC_017763.1\|WP_000950281.1\|275812_277567_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NC_017763.1\|WP_000163986.1\|284077_285514_+\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NC_017763.1\|WP_000066927.1\|283270_284062_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	8.99936e-55
NC_017763.1\|WP_001066553.1\|291393_292770_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.58117e-30
NC_017763.1\|WP_001792906.1\|278422_278866_+\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	8.44339e-64
NC_017763.1\|WP_000031266.1\|286008_286770_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.23141e-27
NC_017763.1\|WP_000757882.1\|289494_290493_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.32136e-100

>NC_017763.1|WP_000163986.1|284077_285514_+|6-phospho-beta-glucosidase
MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKARQITESIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEDVPNEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVVFERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLASALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYPSYAKKMLARKGYDFGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVENNIVNGGLNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLFIVENGFGAVDEVVDGHIHDDYRIEYLKVHITAAIEAVDQDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDNDGHGTMERLKKDSFYWYKQVIASNGDKL
>NC_017763.1|WP_000066927.1|283270_284062_+|PTS-glucose-transporter-subunit-IIA
MSNKYKDQAQDILTAVGGVENIVDVTYDTKGITIHMQHTIPSTANEVKQIVDVTSVAENDAQLVIKLNGNVDEVYQQLQRLIKDANVEEGANTDNINSQDTSYTPQAKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPFNGLISMIVPTKHAIGIRSEEGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN
>NC_017763.1|WP_000922316.1|282417_283122_-|GntR-family-transcriptional-regulator
MLKYEHIAKQLNAFIHHSNFKPGDKLPSVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEIATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDQLNSSEAALLQLSKGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>NC_017763.1|WP_000062639.1|279900_282192_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MSMQSSYKRLVKVLLTILVIVFSILLVGGWYIFKNEAPRPTKIVDQQGHTLVTKGELISGQAIYEKYGLTDYGSYLGNGSYLGPDYTAEALHHYLIGMRKYYAQDIYHKQLHKLNHAELAVVKDKVMKEIRINRYSEKEDQLVLTPGQVYGLKYLQDYYKKEFVNNPKQVGLNENMIKQFQNDDYMVAGNKVEHLSQFFFWGAWLSSTDRPGKTFSYTNNWPYDVDAGNTLPSAGILWTAISVTLLIAGLAFIIYIQKRYQFDMKPTYESERELPKIEVDRKITDSQRKVGKYLVVVMLLFLVQILLGELLAHYYVENKFFGIEIQRLFPFNIAKTWHVQLVIFWVATTWLAAGIYIVPKVLGKEPKKQGVLVDILFWALIIVVMGSMIGEWGHILGWIDSHWWLFGHFGWEYIELGKFWQILFIVGMVLWVIILCRGFLPAIRNKVQVNHDKRHLLTLLFVGAIAIPLFYLASLFIMPNSHVTFADYWRWWIVHLWVEGIFEAFAVVLIGFLMVNMKLTTIETTIRALYFQLILLLGTGIVGMGHHYYWQGDHSIWLALGSCFSALEVVPLCLLIWEAYTHYRLYKNSDIAFPYKGTFIFLASTGLWNAIGAGALGFLINTPAVNYFEHGTQWTAAHAHGSMAGVYGMFSIAIALYVFKNITKKEFWTPKVEKWIKISCWALNIGLAGMVFVTLMPVGYIQLKDALEHGYWHSRLTSFYEQPLVKAIMWGRMPWDIIFTVGVIILVVIFIRGYRHLKPKYRV
>NC_017763.1|WP_000607067.1|278858_279560_+|antiholin-like-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>NC_017763.1|WP_001792906.1|278422_278866_+|antiholin-like-murein-hydrolase-modulator-LrgA
MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>NC_017763.1|WP_000645456.1|277569_278310_+|DNA-binding-response-regulator
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPAYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>NC_017763.1|WP_000950281.1|275812_277567_+|sensor-histidine-kinase
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>NC_017763.1|WP_000608837.1|274892_275567_+|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAVLEKKNVDLNELLQRLNEVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKATYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>NC_017763.1|WP_000975348.1|273027_274749_+|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLTVNANKQYRFNIMLEDIKADLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISMKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMVMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>NC_017763.1|WP_000031266.1|286008_286770_-|class-I-SAM-dependent-methyltransferase
MSKEAGHTFLAKLGKTRLRPGGKEATDWLIQQGAFSQDKQVLEVACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFDDNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSLSAAINVNVSPQTKLGWLDLYHQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTLKIINNALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKEH
>NC_017763.1|WP_000182743.1|287020_287935_-|ribokinase
MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKAAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKSHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV
>NC_017763.1|WP_000750483.1|287962_288367_-|D-ribose-pyranase
MKKTAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>NC_017763.1|WP_000029204.1|288381_289263_-|ribose-transporter-RbsU
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAIILAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>NC_017763.1|WP_000757882.1|289494_290493_-|LacI-family-DNA-binding-transcriptional-regulator
MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSALMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGIDGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNNMIVVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN
>NC_017763.1|WP_001159765.1|290873_291266_+|hypothetical-protein
MQFKLKEEEIISFLELKYPEKEFEYGRLLVGQHKRDDLDVYYFGDTFLMCTIISFKTFEIKETVELSYDAVNRIVLKDGWLFRKMRIETMQKVLKYGTSKLMLTDFQKENYNKYIQGQKQRVIFENGHFV
>NC_017763.1|WP_001066553.1|291393_292770_-|MFS-transporter
MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGEHLRRAISYLMISTVGGIGLAGVIGGLIATNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSFICLSIFIITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTQLSASQYVIAVIIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYAPSVAATVTFIVSIVLMILGSLSAYMIIPKTVKS
>NC_017763.1|WP_000337376.1|293003_293996_+|linear-amide-C-N-hydrolase
MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWTSRTGTTGQTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNEIVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGQSVEVSFKEGEVVIKDNPIGVLTNHPDLDWHYSNLRQYINISPYPATANLLEGVTIEPLGNEAGTFGLPGGFTSTERFVRMAFMKANIAQNNDKEMDLMNAFYLLDAVNIPIGIVRPHDADNHYTMYQTVINLTTRTLYIKYYGSNEIVALKLTDDLINRKDMTIFKPEKHITIRKLNDNQ
>NC_017763.1|WP_000736787.1|294321_295269_+|glycine-glycine-endopeptidase-LytM
MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSAQSQDVSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATTGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNQAYNSHDGNGKVNYPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPMSYLQSR
>NC_017763.1|WP_000570067.1|295320_295980_-|ABC-transporter-ATP-binding-protein
MIEINNLSKRYRNKQIFNHLTMSFDSNRLTVLLGDNGAGKSTLLRMIAGIEKANDGTINYFGEKWNQRQIQNHIGYVPQDIALFEHMTVAENIKFFKSLCKNPINDTTINEYLQQLNFDDTSAKVSTLSGGNKRKINILVGLLGKPRILILDEPTVGIDLKSRHDIHQLLNIMKSKCLIILTTHHLDEVEALADDIKLIGQDPFYQHVLEDKQWTYTYY

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Crispr_ID: NC_017763_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_2

625614-625701

Orphan

Consensus_repeat	Method
AAAAGAAATTCTACAGGCAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017763_2

>merge|NC_017763|2|625614-625701|CRISPRCasFinder
AAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACACAGAGAATTTCAAAAAGAAATTCTACAGGCAATGTAAGTTGG

>NC_017763|2|2|625614-625701|CRISPRCasFinder
AAAAGAAATTCTACAGGCAATGCAAGTTGG	GGTGTGGGCCCCAACACAGAGAATTTCA
AAAAGAAATTCTACAGGCAATGTAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_031789458.1\|620040_620142_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_100185067.1\|622001_622637_+\|DUF443-domain-containing-protein	unknown	unknown	gnl\|CDD\|335700
NC_017763.1\|WP_001021145.1\|631223_632885_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NC_017763.1\|WP_000633782.1\|625959_626496_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_017763.1\|WP_000359086.1\|630810_631227_+\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226896
NC_017763.1\|WP_000655099.1\|630610_630718_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_001200743.1\|629523_630534_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|181842
NC_017763.1\|WP_000882191.1\|623443_624076_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|335700
NC_017763.1\|WP_000860590.1\|618233_619556_-\|FAD-containing-oxidoreductase	unknown	unknown	gnl\|CDD\|180907
NC_017763.1\|WP_000882094.1\|622683_623304_+\|DUF443-domain-containing-protein	unknown	unknown	gnl\|CDD\|335700
NC_017763.1\|WP_000477504.1\|626664_627141_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_017763.1\|WP_000616885.1\|616587_617664_+\|phosphomevalonate-kinase	unknown	unknown	gnl\|CDD\|130287
NC_017763.1\|WP_000808893.1\|624523_625462_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NC_017763.1\|WP_001788287.1\|628503_629025_+\|YwhD-family-protein	unknown	unknown	gnl\|CDD\|378039
NC_017763.1\|WP_000901762.1\|633218_633854_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NC_017763.1\|WP_000020813.1\|620606_622001_+\|transposase	unknown	unknown	gnl\|CDD\|368093
NC_017763.1\|WP_001047245.1\|619542_619983_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_017763.1\|WP_000749061.1\|634226_635114_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NC_017763.1\|WP_000180230.1\|627180_628476_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_017763.1\|WP_000798969.1\|617840_618182_+\|DUF1450-domain-containing-protein	unknown	unknown	gnl\|CDD\|377806

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_001047245.1\|619542_619983_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	2.0619e-25
NC_017763.1\|WP_100185067.1\|622001_622637_+\|DUF443-domain-containing-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	8.51072e-61
NC_017763.1\|WP_001021145.1\|631223_632885_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NC_017763.1\|WP_000633782.1\|625959_626496_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
NC_017763.1\|WP_000359086.1\|630810_631227_+\|DUF1934-domain-containing-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	2.62525e-58
NC_017763.1\|WP_001200743.1\|629523_630534_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
NC_017763.1\|WP_000882191.1\|623443_624076_+\|DUF443-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	2.26478e-44
NC_017763.1\|WP_000860590.1\|618233_619556_-\|FAD-containing-oxidoreductase	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	0
NC_017763.1\|WP_000882094.1\|622683_623304_+\|DUF443-domain-containing-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	3.87e-58
NC_017763.1\|WP_000477504.1\|626664_627141_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
NC_017763.1\|WP_000616885.1\|616587_617664_+\|phosphomevalonate-kinase	gnl\|CDD\|130287	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase. [Central intermediary metabolism, Other].	0
NC_017763.1\|WP_000808893.1\|624523_625462_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.11883e-166
NC_017763.1\|WP_001788287.1\|628503_629025_+\|YwhD-family-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
NC_017763.1\|WP_000901762.1\|633218_633854_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.15274e-92
NC_017763.1\|WP_000020813.1\|620606_622001_+\|transposase	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	1.09874e-10
NC_017763.1\|WP_000749061.1\|634226_635114_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	4.84401e-73
NC_017763.1\|WP_000180230.1\|627180_628476_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
NC_017763.1\|WP_000798969.1\|617840_618182_+\|DUF1450-domain-containing-protein	gnl\|CDD\|377806	pfam07293, DUF1450, Protein of unknown function (DUF1450). This family consists of several hypothetical bacterial proteins of around 80 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.	8.95773e-05

>NC_017763.1|WP_000808893.1|624523_625462_+|aldo/keto-reductase
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDDNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKLAEQVVENIKAADIVLSDDEIQYIDELFPIED
>NC_017763.1|WP_000882191.1|623443_624076_+|DUF443-family-protein
MLCEVIAIYKNPKYRIIKYNDEYLMVNIINNWLVLFIPLLNWLTPKRYIKISQEELESLNTFKPAKNNAFWPALGSSVLFSVTFRKYMPLFNVRLEKTIVIAIFFVVFLGILFFYLNLNRRLALSVFTMNKEKSQKMILLPNLKHFFFIIFAYLYFGGFSFFTLYALITIDVQNIIIFICWGAVTMFFFFINIVPIGIKKAHVILLKKAE
>NC_017763.1|WP_000882094.1|622683_623304_+|DUF443-domain-containing-protein
MLCESKIINKNPKYRIIKYNDEYLMIDIISTWISLFFPFINWFITKRYVKISREEFENLNIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDVQLDKKLVIAICCITFIGILIFYVRLIKKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFAWITAIMGFFLVNIALIIDKNIHVILKN
>NC_017763.1|WP_100185067.1|622001_622637_+|DUF443-domain-containing-protein
MLLCESKVINKNPKYRIIKYESEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYEKLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEKLIVWSSCFISFLGVIFFYCYLNKKLTLNVYKENKNNELKLRLLPSFKNMCFTIFYYLFTGFMSYGAFYLLVFENVQNLILYISWLFMTMLFMLMNMHSIIDKKVHIFLKSNK
>NC_017763.1|WP_000020813.1|620606_622001_+|transposase
MSIDMYLDRSRNQASSVGNLSQTMNSNYDALEKAITQFINDDALKGKAYTSAKQFFSTVLIPLSTSMKTLSDLTKQACDNFVSRYTSEVDSISLKESELEEDIRSLSQQITRYENLTNNLKKHASDNQQAISSNQQIIQTLGQQKHELEEKLRKLREFNQKSPEIFKEVEEFQKIVQQGLTQAQNFWNFSTNQFNIPSGKELDWAKASHEKYLKVAMGKIEHKAEKETLNKADFAVIKAYAKEHPEDDIPKSIMKYINDNKDSIKRDIGLDITSTLLEQGGINASKFGVFINTAGGVKGPAGPNSFVEVKRTSGNVFIENGSKFAKGGKYLGKGVAGVGFGIGMYDDLANDDKTFGEALSHNGMTLAAGSVAAFGVAALVSNPVGWAVVGILTAGIIGSIVSDYLYQNNYFGIKDKVDWAGHKIDEGIDAVNKTAEKAVDSVGNTIGDATKSISNHINPMKWSW
>NC_017763.1|WP_031789458.1|620040_620142_+|hypothetical-protein
MCQYLCLKSVELGVVIVMIYCLKVVALTVRLHN
>NC_017763.1|WP_001047245.1|619542_619983_-|Rrf2-family-transcriptional-regulator
MNLEFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGKDGGYLANDQSADVSLATLYKHFVLEKKHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGKTIKDVIEDIQKEDLCHENI
>NC_017763.1|WP_000860590.1|618233_619556_-|FAD-containing-oxidoreductase
MKTYDLIVIGFGKAGKTLAKYAASTGQHVAVIEQSSKMYGGTCINIGCIPSKTLVHDGLEGKSFEASYNRKNDVVNALNNKNYHLLADDNNIDVLDFKAQFKSNTEVNLLDQHGDIADSITAPHIIINTGATSVIPNIKDLDQAKHVFDSTGLLNINYQPKHLVIVGGGYIALEFASMFANLGSKVTVLERGESFMPREDQDVVAHAITDLENKGIALHTNVETTELSSDDHHTTVRTNVGNFEADAVLLAIGRKPNTDLALENTDIELGDRGEIKVNAHLQTTVPHIYAAGDVKGGLQFTYISLDDYRIIKSALYGNQSRTTDNRGSVPYTVFIDPPLSRVGLTSKEAAAQHYDYTEHQLLVSAIPRHKINNDPRGLFKVVINNENNMILGATLYGKQSEELINIIKLAIDQNIPYTVLRDNIYTHPTMAESFNDLFNF
>NC_017763.1|WP_000798969.1|617840_618182_+|DUF1450-domain-containing-protein
MKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLAALTEEELIEKVSQQLKKPRDSEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
>NC_017763.1|WP_000616885.1|616587_617664_+|phosphomevalonate-kinase
MIQVKAPGKLYIAGEYAVTEPGYKSVLIALDRFVTATIEEADQYKGTIHSKALHHNPVTFSRDEDSIVISDPHAAKQLNYVVTAIEIFEQYAKSCDIAMKHFHLTIDSNLDDSNGHKYGLGSSAAVLVSVIKVLNEFYDMKLSNLYIYKLAVIANMKLQSLSSCGDIAVSVYSGWLAYSTFDHEWVKHQIEDTTVEEVLIKNWPGLHIEPLQAPENMEVLIGWTGSPASSPHFVSEVKRLKSDPSFYGDFLEDSHRCVEKLIHAFKTNNIKGVQKMVRQNRTIIQRMDKEATVDIETEKLKYLCDIAEKYHGASKTSGAGGGDCGITIINKDVDKEKIYDEWTKHGIKPLKFNIYHGQ
>NC_017763.1|WP_000633782.1|625959_626496_+|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>NC_017763.1|WP_000477504.1|626664_627141_+|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>NC_017763.1|WP_000180230.1|627180_628476_+|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>NC_017763.1|WP_001788287.1|628503_629025_+|YwhD-family-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>NC_017763.1|WP_001200743.1|629523_630534_+|alcohol-dehydrogenase-AdhP
MRAAVVTKDHKVSIEDKKIRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>NC_017763.1|WP_000655099.1|630610_630718_+|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>NC_017763.1|WP_000359086.1|630810_631227_+|DUF1934-domain-containing-protein
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>NC_017763.1|WP_001021145.1|631223_632885_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>NC_017763.1|WP_000901762.1|633218_633854_+|endonuclease-III-domain-containing-protein
MLGTDELYKLLYRHMGPQNWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELSIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGELRKELLSLKGIGSETADVLLVYIFGRIVFIPDSYTRKIYDKLGYENTKSYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>NC_017763.1|WP_000749061.1|634226_635114_+|ABC-transporter-substrate-binding-protein
MKKSLIAFILIFMLVLSGCGMKDNHKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK

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Crispr_ID: NC_017763_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_3

909847-909931

Orphan

Consensus_repeat	Method
TTTTCGAAATTCTCTGTGTTTGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017763_3

>merge|NC_017763|3|909847-909931|CRISPRCasFinder
TTTTCGAAATTCTCTGTGTTTGGGCCCGCTCCCCAACTCGCATTGCTTGTAGAATTTCTTTTTGAAATTCTCTGTGTTTGGGCCC

>NC_017763|3|3|909847-909931|CRISPRCasFinder
TTTTCGAAATTCTCTGTGTTTGGGCCC	GCTCCCCAACTCGCATTGCTTGTAGAATTTC
TTTTTGAAATTCTCTGTGTTTGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_000390575.1\|909460_909769_+\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062
NC_017763.1\|WP_000007970.1\|896218_896794_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_017763.1\|WP_000758216.1\|896798_897323_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NC_017763.1\|WP_001037456.1\|917851_918973_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NC_017763.1\|WP_001182436.1\|908522_909347_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_017763.1\|WP_000682088.1\|920467_920653_-\|YjzD-family-protein	unknown	unknown	gnl\|CDD\|371396
NC_017763.1\|WP_000769692.1\|919776_920211_+\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
NC_017763.1\|WP_000700883.1\|918950_919466_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|224793
NC_017763.1\|WP_001124516.1\|907154_908471_-\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|184103
NC_017763.1\|WP_000154918.1\|901550_905204_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NC_017763.1\|WP_001044227.1\|910423_912238_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017763.1\|WP_000670755.1\|905367_906270_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_017763.1\|WP_001047062.1\|915109_915979_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_017763.1\|WP_000902807.1\|906594_906984_+\|YisL-family-protein	unknown	unknown	gnl\|CDD\|237465
NC_017763.1\|WP_000404426.1\|917217_917859_+\|L-threonylcarbamoyladenylate-synthase	unknown	unknown	gnl\|CDD\|223088
NC_017763.1\|WP_000619353.1\|916088_917234_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|223197
NC_017763.1\|WP_000172376.1\|898073_901550_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NC_017763.1\|WP_001100526.1\|920947_921889_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_017763.1\|WP_000353939.1\|912441_915051_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NC_017763.1\|WP_000711894.1\|897338_897914_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_000390575.1\|909460_909769_+\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	1.55915e-41
NC_017763.1\|WP_000007970.1\|896218_896794_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.59702e-40
NC_017763.1\|WP_000758216.1\|896798_897323_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	6.16967e-49
NC_017763.1\|WP_001037456.1\|917851_918973_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.7725e-05
NC_017763.1\|WP_001182436.1\|908522_909347_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.66336e-85
NC_017763.1\|WP_000682088.1\|920467_920653_-\|YjzD-family-protein	gnl\|CDD\|371396	pfam11151, DUF2929, Protein of unknown function (DUF2929). This family of proteins with unknown function appears to be restricted to Firmicutes.	3.295e-11
NC_017763.1\|WP_000769692.1\|919776_920211_+\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	1.04833e-34
NC_017763.1\|WP_000700883.1\|918950_919466_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|224793	COG1881, COG1881, Phospholipid-binding protein [General function prediction only].	7.30186e-43
NC_017763.1\|WP_001124516.1\|907154_908471_-\|CoA-disulfide-reductase	gnl\|CDD\|184103	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.	0
NC_017763.1\|WP_000154918.1\|901550_905204_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017763.1\|WP_001044227.1\|910423_912238_+\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	4.21639e-82
NC_017763.1\|WP_000670755.1\|905367_906270_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.74159e-87
NC_017763.1\|WP_001047062.1\|915109_915979_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.64595e-38
NC_017763.1\|WP_000902807.1\|906594_906984_+\|YisL-family-protein	gnl\|CDD\|237465	PRK13673, PRK13673, hypothetical protein; Provisional.	2.91098e-33
NC_017763.1\|WP_000404426.1\|917217_917859_+\|L-threonylcarbamoyladenylate-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	7.08013e-56
NC_017763.1\|WP_000619353.1\|916088_917234_+\|2-isopropylmalate-synthase	gnl\|CDD\|223197	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism].	1.29632e-86
NC_017763.1\|WP_000172376.1\|898073_901550_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017763.1\|WP_001100526.1\|920947_921889_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NC_017763.1\|WP_000353939.1\|912441_915051_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_017763.1\|WP_000711894.1\|897338_897914_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	9.57816e-54

>NC_017763.1|WP_000390575.1|909460_909769_+|metal-sulfur-cluster-assembly-factor
MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVNVDDEGVCTVDMTLTSMGCPMGPQIIDQVKTVLAEIPEIQDTEVNIVWSPPWTKDMMSRYAKIALGVS
>NC_017763.1|WP_001182436.1|908522_909347_-|Cof-type-HAD-IIB-family-hydrolase
MQPHLICLDLDGTLLNDNKEISSYTKQVLNELQQRGHQIMIATGRPYRASQMYYHELNLTTPIVNFNGAYVHHPKDKNFKTCHEILDLGIAQNIIQGLQQYQVSNIIAEVKDYVFINNHDPRLFEGFSMGNPRIQTGNLLVHLKESPTSILIEAEESKIPEIKNMLTHFYADHIEHRRWGAPFPVIEIVKLGINKARGIEQVRQFLNIDRNNIIAFGDEDNDIEMIEYARHGVAMENGLQELKDVANNITFNNNEDGIGRYLNDFFNLNIRYYC
>NC_017763.1|WP_001124516.1|907154_908471_-|CoA-disulfide-reductase
MPKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDTDMNQPILDELDKREIPYRLNEEIDAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLTASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGYKAK
>NC_017763.1|WP_000902807.1|906594_906984_+|YisL-family-protein
MLHLHILSWVLAIILFIATYLNISKNQGGSPFFKPLHMILRLFMLLTLISGFWILIQSFMNGGANHMLLTLKMLCGVAVVGLMEVSIAKRKRHEQSHTMFWITIALIIITMVLGVILPLGPISKLFGIG
>NC_017763.1|WP_000670755.1|905367_906270_+|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVERLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>NC_017763.1|WP_000154918.1|901550_905204_+|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKANDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGAEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTINGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEVADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NC_017763.1|WP_000172376.1|898073_901550_+|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKQDPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYVKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFKQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFKQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEQILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NC_017763.1|WP_000711894.1|897338_897914_+|signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYMIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>NC_017763.1|WP_000758216.1|896798_897323_+|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDYDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NC_017763.1|WP_000007970.1|896218_896794_+|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRWVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTQPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>NC_017763.1|WP_001044227.1|910423_912238_+|acetyltransferase
MNKTKGFTKYKKMRYMPGLDGLRAIAVLGIIIYHLNKQWLTGGFLGVDTFFVISGYLITSLLLKEYDDTGIIKLKSFWIRRLKRLLPAVIVLLMVVGTATLLLKSDNIIRVKHDIIAAIFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYIFFPVILVTLLLTIKKRYKIGFIFWGVSIISLGLMMFIYSINGDHSRVYFGTDTRLQTLLLGVILAFLWPPFKLKNDPPKVVKYVIDSIGSLSFIILILLFFIINDETNWIYDGGFYLISILTLFIIASVVHPSTWIAKIFSNPVLVFIGKRSYSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISLTIIFAELSYRFIETPFRKEGIKALNWRPSYIPQFIRMAIVVTLLIPFMLILVGAFNKYGKDIIGEKANSFDTTIEDNYLMRIAPIDNIHIDGLVSEKKKESSDVYNNIKPLLIGDSVMVDIGESFKSSVPKSRIDGKVGRQLYQTLPLVKANYSQYKKSSDQVVLELGTNGDFTVKQLDDLLNQFGKAKIYLVNTRVPRIYEANVNRLLADAAKRKSNVTLIDWYKRSQGHSEYFAPDGVHLEYKGVLALKDEILKALKKK
>NC_017763.1|WP_000353939.1|912441_915051_+|ATP-dependent-chaperone-ClpB
MDINKMTYAVQNALQQAVELSQQHKLQNIEIEAILSAALNESESLYKSILERANIEVDQLNKAYEDKLNTYASVEGDNIQYGQYISQQANQLITKAESYMKEYEDEYISMEHILRSAMDIDQTTKHYINNKVEVIKEIIKKVRGGNHVTSQNPEVNYEALAKYGRDLVEEVRQGKMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPESLLDKTVFELDLSALVAGAKYRGEFEERLKAVLKEVKESDGRIILFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVAVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDQVNRHVMQLEIEESALKNESDNASKQRLQELQEELANEKEKQAALQSRVESEKEKIANLQEKRAQLDESRQALEDAQTNNNLEKAAELQYGTIPQLEKELRELEDNFQDEQGEDTDRMIREVVTDEEIGDIVSQWTGIPVSKLVETEREKLLHLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLENVKETGEITESTEKAVMTSLNAYFKPEILNRMDDIVLFKPLSIDDMSMIVDKILTQLNIRLLEQRISIEVSDDAKAWLGQEAYEPQYGARPLKRFVQRQIETPLARMMIKEGFPEGTTIKVNLNSDNNLTFNVEKIHE
>NC_017763.1|WP_001047062.1|915109_915979_-|LysR-family-transcriptional-regulator
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTEDGHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFIDVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEASLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPIYITTDSDYNISVINTKILQAPISFTYIYSKKESPEILAFIRSFKKYIANEQL
>NC_017763.1|WP_000619353.1|916088_917234_+|2-isopropylmalate-synthase
MIRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIHQYREILNNDKEIVVLTRLDENEINKILNLKIHNLAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIAILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKNSKAVQFPISNISSKKILKNKFKSIVHPKDIEENISFYKLINKFIPEVVPEDTADLLQVIKGRSKDGNFK
>NC_017763.1|WP_000404426.1|917217_917859_+|L-threonylcarbamoyladenylate-synthase
MEILNESVESFEKLYLQLQNSYPIIVPTDTNYNLCSLPNNKICIDRIFKYKKRSKDKPLSLFIDEPEDWKLYGENKNVELVDKLVNIFWPGPLNIILKNKTNYNYMLNNSDSIAIGCVQNKTMRNLISYIQSPIAITSANISGTADDILITENEAIKHMGNNVNYMLRSKNKSKYKSSSTIIKVTGNKIELLREGDIKFEEIKAKLGSGIQYE
>NC_017763.1|WP_001037456.1|917851_918973_+|MFS-transporter
MNKLILGIYLYRILSRAYFYLPFLLIYFLAQNYSIMQLEILMATYGVAAFLFGLYKEKIFRIYQIKDAYKLIVSEVFKIIGLILLLYPSHFYILLVAQLLLGLSYSIMAGVDTSIIKMNIKNHKLIQNKSNGYMFLSLLISGIIGSYLYGINIKWPIYMTGLFSILTILVILLTLVENVDCNIKSESKRKRKKLLADEKFWVLHYSFLRALILGFFVGFIPINLYIDLKLNNVQFISVLTSYTIMGYISSRYLTRYLNYKFLSEICLVIFLIIYTFQNIIAITIAILFLGISSGLTRPQTINELSNSSNLAAILNYAETLYFIFNIAFLLIGGYLYSIGTIQYLMLFMSLLTFIYLLTLFYLRRDQHENQHRI
>NC_017763.1|WP_000700883.1|918950_919466_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MKINTEFKGNNIPYEYAAGADISDLINGNPIKSFPFEITELPKDTKYLAWSLIDYDAIPVCGFAWIHWSVANVSVTRDSISIKPDLSRTKGDYVQGKNSFTSGLLADDFSEIENHYVGPTPPDQDHQYELTVYALDHSLNLKNGFYLNEFLKEVNQHKIDQTSINLIGRKI
>NC_017763.1|WP_000769692.1|919776_920211_+|MAP-domain-containing-protein
MKLKSFITVTLALGMIATTGATVASNEVSAAEKDKQPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDSSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
>NC_017763.1|WP_000682088.1|920467_920653_-|YjzD-family-protein
MKHLVTFFWALLLMQMVNFVLNSLVGGDSLNLVNPIIMAVLFTIFTAIFAAVIKPPKDSSQ
>NC_017763.1|WP_001100526.1|920947_921889_+|ketoacyl-ACP-synthase-III
MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAVLFGDGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQANIRIMESARERLGISKDKMSVSVNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGLTWGAMTIKWGK

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Crispr_ID: NC_017763_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_4

1979508-1979597

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_017763_4

>merge|NC_017763|4|1979508-1979597|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAATTTCTTTT

>NC_017763|4|4|1979508-1979597|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CGAAATTCTCTGTGTTGGGGCCCACA
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_000613738.1\|1985185_1985740_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NC_017763.1\|WP_000428172.1\|1973754_1974030_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_001110179.1\|1978012_1978399_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_001250329.1\|1982690_1984004_-\|lipid-II-isoglutaminyl-synthase-subunit-MurT	unknown	unknown	gnl\|CDD\|223840
NC_017763.1\|WP_000544969.1\|1981957_1982689_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NC_017763.1\|WP_001790679.1\|1984877_1984970_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000180460.1\|1972936_1973137_-\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NC_017763.1\|WP_000149064.1\|1977296_1977998_-\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NC_017763.1\|WP_000037075.1\|1974307_1975525_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NC_017763.1\|WP_001670387.1\|1981319_1981733_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000636142.1\|1978615_1979374_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NC_017763.1\|WP_000949467.1\|1984295_1984796_+\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NC_017763.1\|WP_000228666.1\|1973283_1973748_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NC_017763.1\|WP_000153535.1\|1975637_1976267_-\|two-component-system-response-regulator-VraR	unknown	unknown	gnl\|CDD\|225107
NC_017763.1\|WP_000548775.1\|1987124_1987655_-\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NC_017763.1\|WP_001017131.1\|1976256_1977300_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_017763.1\|WP_000999713.1\|1979902_1980889_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NC_017763.1\|WP_000140172.1\|1985807_1986878_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NC_017763.1\|WP_001790257.1\|1981761_1981872_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_075583716.1\|1971677_1972934_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_000613738.1\|1985185_1985740_+\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NC_017763.1\|WP_000544969.1\|1981957_1982689_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
NC_017763.1\|WP_000149064.1\|1977296_1977998_-\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
NC_017763.1\|WP_001250329.1\|1982690_1984004_-\|lipid-II-isoglutaminyl-synthase-subunit-MurT	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.37755e-99
NC_017763.1\|WP_000180460.1\|1972936_1973137_-\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
NC_017763.1\|WP_000037075.1\|1974307_1975525_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	4.24482e-85
NC_017763.1\|WP_000636142.1\|1978615_1979374_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
NC_017763.1\|WP_000949467.1\|1984295_1984796_+\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
NC_017763.1\|WP_000228666.1\|1973283_1973748_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
NC_017763.1\|WP_000153535.1\|1975637_1976267_-\|two-component-system-response-regulator-VraR	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
NC_017763.1\|WP_000548775.1\|1987124_1987655_-\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.92343e-11
NC_017763.1\|WP_001017131.1\|1976256_1977300_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
NC_017763.1\|WP_000999713.1\|1979902_1980889_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
NC_017763.1\|WP_000140172.1\|1985807_1986878_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NC_017763.1\|WP_075583716.1\|1971677_1972934_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0

>NC_017763.1|WP_000636142.1|1978615_1979374_-|type-I-methionyl-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>NC_017763.1|WP_001110179.1|1978012_1978399_-|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>NC_017763.1|WP_000149064.1|1977296_1977998_-|cell-wall-active-antibiotics-response-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>NC_017763.1|WP_001017131.1|1976256_1977300_-|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>NC_017763.1|WP_000153535.1|1975637_1976267_-|two-component-system-response-regulator-VraR
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NC_017763.1|WP_000037075.1|1974307_1975525_+|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIIFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>NC_017763.1|WP_000428172.1|1973754_1974030_+|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>NC_017763.1|WP_000228666.1|1973283_1973748_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NC_017763.1|WP_000180460.1|1972936_1973137_-|DUF1128-family-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>NC_017763.1|WP_075583716.1|1971677_1972934_-|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGETVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>NC_017763.1|WP_000999713.1|1979902_1980889_+|aromatic-acid-exporter-family-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>NC_017763.1|WP_001670387.1|1981319_1981733_-|hypothetical-protein
MKPTKVILRDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>NC_017763.1|WP_001790257.1|1981761_1981872_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>NC_017763.1|WP_000544969.1|1981957_1982689_-|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>NC_017763.1|WP_001250329.1|1982690_1984004_-|lipid-II-isoglutaminyl-synthase-subunit-MurT
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NC_017763.1|WP_000949467.1|1984295_1984796_+|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>NC_017763.1|WP_001790679.1|1984877_1984970_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NC_017763.1|WP_000613738.1|1985185_1985740_+|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NC_017763.1|WP_000140172.1|1985807_1986878_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NC_017763.1|WP_000548775.1|1987124_1987655_-|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLFLLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ

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Crispr_ID: NC_017763_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_5

2307938-2308062

Orphan

Consensus_repeat	Method
CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017763_5

>merge|NC_017763|5|2307938-2308062|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCAATGATTTCCCATGATTTTTTAGTATTTTCTTTTGAGTTACTCGAAAATTATCCTCTTTACTCGAAAGCTCACAAAACGCTTGATATCA

>NC_017763|5|5|2307938-2308062|CRISPRCasFinder
CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA	ATGATTTCCCATGATTTTTTAGTATTTTCTTTTGAGTTACTCGAAAATTAT
CCTCTTTACTCGAAAGCTCACAAAACGCTTGATATCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_000769708.1\|2303156_2303582_+\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
NC_017763.1\|WP_000791618.1\|2310357_2311164_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_017763.1\|WP_000155383.1\|2311153_2312014_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
NC_017763.1\|WP_000090796.1\|2315174_2315540_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NC_017763.1\|WP_000569649.1\|2313742_2314687_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_017763.1\|WP_000044360.1\|2302046_2302862_-\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319792
NC_017763.1\|WP_000179063.1\|2303960_2304665_-\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
NC_017763.1\|WP_001044438.1\|2298281_2299136_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NC_017763.1\|WP_000222252.1\|2295795_2298222_+\|polysaccharide-lyase-8-family-protein	unknown	unknown	gnl\|CDD\|238517
NC_017763.1\|WP_000136271.1\|2307692_2307872_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_001250036.1\|2308872_2309310_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NC_017763.1\|WP_000542274.1\|2313357_2313726_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_017763.1\|WP_000101625.1\|2314761_2315151_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_017763.1\|WP_001221857.1\|2309549_2310353_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_017763.1\|WP_000214777.1\|2300296_2301814_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340855
NC_017763.1\|WP_000655245.1\|2306860_2307043_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000170975.1\|2308460_2308859_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_017763.1\|WP_000130134.1\|2304701_2306366_-\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NC_017763.1\|WP_000174176.1\|2300008_2300287_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000389655.1\|2312010_2312820_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_000769708.1\|2303156_2303582_+\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	2.66977e-34
NC_017763.1\|WP_000791618.1\|2310357_2311164_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.16976e-49
NC_017763.1\|WP_000389655.1\|2312010_2312820_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NC_017763.1\|WP_000090796.1\|2315174_2315540_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.16257e-78
NC_017763.1\|WP_000569649.1\|2313742_2314687_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
NC_017763.1\|WP_000044360.1\|2302046_2302862_-\|HAD-IIB-family-hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.0464e-100
NC_017763.1\|WP_000179063.1\|2303960_2304665_-\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	9.58959e-119
NC_017763.1\|WP_001044438.1\|2298281_2299136_-\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	7.61272e-24
NC_017763.1\|WP_000214777.1\|2300296_2301814_+\|glycosyltransferase	gnl\|CDD\|340855	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.	5.20492e-61
NC_017763.1\|WP_000155383.1\|2311153_2312014_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
NC_017763.1\|WP_001250036.1\|2308872_2309310_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.37368e-100
NC_017763.1\|WP_000542274.1\|2313357_2313726_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
NC_017763.1\|WP_000101625.1\|2314761_2315151_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
NC_017763.1\|WP_001221857.1\|2309549_2310353_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.95917e-120
NC_017763.1\|WP_000222252.1\|2295795_2298222_+\|polysaccharide-lyase-8-family-protein	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
NC_017763.1\|WP_000170975.1\|2308460_2308859_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
NC_017763.1\|WP_000130134.1\|2304701_2306366_-\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0

>NC_017763.1|WP_000136271.1|2307692_2307872_-|hypothetical-protein
MTEIVEFLSDGKLASRLEIQETMGLQKSYTSELIAELKKLEIIGSEGRGLGTRYYLIRD
>NC_017763.1|WP_000655245.1|2306860_2307043_-|hypothetical-protein
MKDSIFWKKAFIPVYFIVAMLVFLLFRFYIKTDNFSMYLMIIFLICLGTASIIYNYKNNR
>NC_017763.1|WP_000130134.1|2304701_2306366_-|acetolactate-synthase-AlsS
MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPAESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGLISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELDTQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISDKVDEPFINQQHLDELEQLRAHIDQETGIKATHEEGILHPVEIIESMQKVLTDETTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>NC_017763.1|WP_000179063.1|2303960_2304665_-|acetolactate-decarboxylase
MASVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIHDEDFTNANIDYKDISDEIREAE
>NC_017763.1|WP_000769708.1|2303156_2303582_+|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
>NC_017763.1|WP_000044360.1|2302046_2302862_-|HAD-IIB-family-hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVITAVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILRHISAQYNVEFIPQRAFEGNETHYNFYFHSTGNHNNDRRILEALVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>NC_017763.1|WP_000214777.1|2300296_2301814_+|glycosyltransferase
MTTYMLMYSIPEKAGGITSVMLNRSKLLAEKGYSCALLTLDDKNYDPLRAKLTNSGRLHKQVKIVNLYEELKMLYDVENTEIENKNMQTFEKLNLLNQEGFYIQKDEYEEKKYARYFKDNHYIMYKKWINGQLSHIDYFQNRKRFKRHVFQNKILRKEITFNDKNKMSEVKYLSNDGFCYLSYWYGDNENIVNIFYFDKNSKEVLNFKNNKAFHSYWLDKNLTSNDVLILDGIGTYHKVENMQNNDIKKIFTIHTNHFMSPYSYGAEIKPEFRNMLLNLKKLDTLVVLTKEQKDDIIKQFGDYNNIKVIPNAISFEENLTQNIREKNSIIVLQRFVAMKNITHIISAINIVRKKVKDVKLHIYGTGTQKENYTKLIKKLKLQDNVFIHDYAFDIRALYTKTSLSVLTSDYEGLPMSLLEAMSYGVPVISYPINYGPKSIIQNNINGIITKKKDNINELAKKIIHVLKKETLISQFSENARTTIKTNFSYEAVSKKWIELIDEKSQ
>NC_017763.1|WP_000174176.1|2300008_2300287_+|hypothetical-protein
MTLNEYNYNNELILKLNKIEVQKNNEKISEVFKDYEILKPKIVFNGSNPYLALNHIIVAEIENYSSLETFSKIYVDEDYYYNYGELIIKCKK
>NC_017763.1|WP_001044438.1|2298281_2299136_-|M23-family-metallopeptidase
MNKTNFGDYLNKSKSRKIYKIFDQNLKREFSYWHFRKLFKSYTRQSDVHELKVCTQNDGTMEQIWIDKANQFGVAVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKNKGKVNTDYFYFGKDIIAPANGTVEKVANGVQDNSIGSTNESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFINNRELIKGDVVCGLQGE
>NC_017763.1|WP_000222252.1|2295795_2298222_+|polysaccharide-lyase-8-family-protein
MTYRMKKWQKISTITLLMAGVITFNDSEFRSVDKHQIAVADTNVQTTDYEKLRNTWLNVNYGYNQYDENNDAMKKKFEATEKEATNLLSSMKTESDRKYLWENSKDLDTKSADMTRTYRNIEKIAEAMKHKNTKLNTPDNKNKVKDALEWLHKNAYGKEPTDKVKELTENFKNKTSRNTNLNWWDYEIGTPRALTNTLILLNGDISSDEKKKYTAPIKTFAPESDKILSSVGQPEQAKGGNLVDIAKVKLLESIIEEDTTMMKESIDAFNKVFTYVQSNATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETSFKDSNQNDTTLKSWIDEGFMPLIYKGEMMDLSRGRAISRENETSHSVSATVMKSLLRLSDAMDDSTKAKYKQIVKTSVKSDSSYKQNDYLSSYSDISKMKSLMEDSTISTNDLTQQLKIYNDMDRVTYHNKGLDFAFGLSMTSKNVARYESINNENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTIENEEPKGTDVKKSSKTFVGGTKFDDQHASIGMDFENQDKTLTAKKSYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKTNGYTLYTDDKQTTASDNQDTNSVFLESTNKPKNNIGYHFLNKSKITVKKESHTGKWSDINKSQKSEDKTDEYYEVTQKHSDKDNKYGYVLYPGITKDNFKSKASQVTVVKQDDDFHVVKDNESVWAGVNYSDSAKTFEINGTKVEVKAKGMFILKKKNDKTYECSFYNPESTNPASDIESKISMTGYSITNKDTSTTNESGVRFELTK
>NC_017763.1|WP_000170975.1|2308460_2308859_-|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>NC_017763.1|WP_001250036.1|2308872_2309310_-|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKATYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NC_017763.1|WP_001221857.1|2309549_2310353_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND
>NC_017763.1|WP_000791618.1|2310357_2311164_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWVFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVQRTSYRQLKWQLRDTLSLIMIIPFAIILFVLKYSGV
>NC_017763.1|WP_000155383.1|2311153_2312014_-|energy-coupling-factor-transporter-ATPase
MTIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKAIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKEKLADWHIGLPEIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>NC_017763.1|WP_000389655.1|2312010_2312820_-|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTAIEIFDHAEELTTIGLDLPFPIKINQMLGYQTSFLTYEGLVDQL
>NC_017763.1|WP_000542274.1|2313357_2313726_-|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>NC_017763.1|WP_000569649.1|2313742_2314687_-|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>NC_017763.1|WP_000101625.1|2314761_2315151_-|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV
>NC_017763.1|WP_000090796.1|2315174_2315540_-|30S-ribosomal-protein-S13
MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK

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Crispr_ID: NC_017763_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_6

2550434-2550517

Orphan

Consensus_repeat	Method
ACAGACAATGCAAGTTGGGGTGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017763_6

>merge|NC_017763|6|2550434-2550517|CRISPRCasFinder
ACAGACAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCCACAGACAATGCAAGTTGGGGTGGGA

>NC_017763|6|6|2550434-2550517|CRISPRCasFinder
ACAGACAATGCAAGTTGGGGTGTGG	GCCCCAACAAAGAGAAATTGGATTCCCAATTTCC
ACAGACAATGCAAGTTGGGGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_000173863.1\|2552580_2553396_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NC_017763.1\|WP_000472245.1\|2554258_2555194_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_017763.1\|WP_001081683.1\|2559070_2559892_-\|histidine-racemase-CntK	unknown	unknown	gnl\|CDD\|223331
NC_017763.1\|WP_001058843.1\|2558241_2559060_-\|D-histidine-(S)-2-aminobutanoyltransferase-CntL	unknown	unknown	gnl\|CDD\|176222
NC_017763.1\|WP_000040602.1\|2556947_2558249_-\|staphylopine-dehydrogenase-CntM	unknown	unknown	gnl\|CDD\|226839
NC_017763.1\|WP_001229093.1\|2555206_2556805_-\|staphylopine-dependent-metal-ABC-transporter-substrate-binding-protein-CntA	unknown	unknown	gnl\|CDD\|274072
NC_017763.1\|WP_000923509.1\|2543702_2544365_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226970
NC_017763.1\|WP_000587616.1\|2546407_2546665_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NC_017763.1\|WP_000732088.1\|2547023_2547479_+\|DUF1307-domain-containing-protein	unknown	unknown	gnl\|CDD\|227145
NC_017763.1\|WP_000700931.1\|2539938_2541291_+\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181
NC_017763.1\|WP_000026196.1\|2541352_2542540_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_017763.1\|WP_000590511.1\|2551838_2552588_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NC_017763.1\|WP_000584770.1\|2553392_2554262_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_017763.1\|WP_000675402.1\|2550633_2551827_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NC_017763.1\|WP_000074048.1\|2546141_2546408_-\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|226600
NC_017763.1\|WP_000072439.1\|2549418_2550168_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000143486.1\|2547646_2549224_-\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223147
NC_017763.1\|WP_001076688.1\|2544710_2545787_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NC_017763.1\|WP_000072155.1\|2542933_2543710_-\|iron-export-ABC-transporter-permease-subunit-FetB	unknown	unknown	gnl\|CDD\|223467
NC_017763.1\|WP_000910578.1\|2560770_2561136_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_000173863.1\|2552580_2553396_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.18808e-119
NC_017763.1\|WP_000472245.1\|2554258_2555194_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.85614e-99
NC_017763.1\|WP_001058843.1\|2558241_2559060_-\|D-histidine-(S)-2-aminobutanoyltransferase-CntL	gnl\|CDD\|176222	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0.000103671
NC_017763.1\|WP_000040602.1\|2556947_2558249_-\|staphylopine-dehydrogenase-CntM	gnl\|CDD\|226839	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017763.1\|WP_001229093.1\|2555206_2556805_-\|staphylopine-dependent-metal-ABC-transporter-substrate-binding-protein-CntA	gnl\|CDD\|274072	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein. Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Most appear to be lipoproteins. This protein was previously (circa 2003) thought to mediate binding to nickel through water molecules, but is now thought to involve a chelating organic molecule, perhaps butane-1,2,4-tricarboxylate, acting as a metallophore. [Transport and binding proteins, Cations and iron carrying compounds].	0
NC_017763.1\|WP_000923509.1\|2543702_2544365_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226970	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	1.21101e-118
NC_017763.1\|WP_001076688.1\|2544710_2545787_-\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	4.62851e-171
NC_017763.1\|WP_000732088.1\|2547023_2547479_+\|DUF1307-domain-containing-protein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.02133e-51
NC_017763.1\|WP_000700931.1\|2539938_2541291_+\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	9.64084e-175
NC_017763.1\|WP_000026196.1\|2541352_2542540_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	7.53591e-90
NC_017763.1\|WP_000590511.1\|2551838_2552588_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.93009e-106
NC_017763.1\|WP_000584770.1\|2553392_2554262_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.01187e-84
NC_017763.1\|WP_000675402.1\|2550633_2551827_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.36995e-79
NC_017763.1\|WP_000074048.1\|2546141_2546408_-\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|226600	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown].	3.49994e-30
NC_017763.1\|WP_001081683.1\|2559070_2559892_-\|histidine-racemase-CntK	gnl\|CDD\|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	1.05454e-73
NC_017763.1\|WP_000143486.1\|2547646_2549224_-\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	5.04566e-175
NC_017763.1\|WP_000587616.1\|2546407_2546665_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.00456e-14
NC_017763.1\|WP_000072155.1\|2542933_2543710_-\|iron-export-ABC-transporter-permease-subunit-FetB	gnl\|CDD\|223467	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.19402e-101

>NC_017763.1|WP_000072439.1|2549418_2550168_+|hypothetical-protein
MSNTNKHYIEEEYATEQSRFFKRDIGFIFLYIFLVNILPIIIVFLTFGLVAIFTQQAPWDFSFPISMNISYLLAVILSLAIFRRMHEDAFIPMIRSQIVASTKYKWHILISFTLSIVLFLLLNHFEIFALNVDSFTVFDIYPLIREYGSISLIAIFSLTIILNTLICQLIFRHILIQELSRLIPLKITIVLSVILETLYYYPYINTWWEFIPALILASSATYLYLKSNRNFMVSYFYQLAVILVLHIFM
>NC_017763.1|WP_000143486.1|2547646_2549224_-|FMN-binding-glutamate-synthase-family-protein
MTFLTVMQFIVNIIIIGFLLTVIVIGLIWLIKDKRQSQHSVLRNYPLLARIRYISEKMGPELRQYLFSGDNEGKPFSRNDYKNIVLAGKYNSRMTSFGTTKDYQDGFYIQNTMFPMQRNEISVDNTTLLSTFIYKIANERLFSREEYRVPTKIDPYYLSDDHAIKLGEHLKYPFILKRIVGQSGMSYGALGKNAITALSKGLAKAGTWMNTGEGGLSEYHLKGNGDIIFQIGPGLFGVRDKEGNFSEGLFKEVAQLSNVRAFELKLAQGAKTRGGHMEAEKVNEEIAKIRNVEPYKTINSPNRYEFIHNAEDLIRFVDQLQQLGQKPVGFKIVVSKVSEIETLVRTMVELDKYPSFITIDGGEGGTGATFQELQDGVGLPLFTALPIVSGMLEKYGIRDKVKLAASGKLVTPDKIAIALGLGADFVNIARGMMISVGCIMSQQCHMNTCPVGVATTDAKKEKALIVGEKQYRVTNYVTSLHEGLFNIAAAVGVSSPTEITADHIVYRKIDGELQTIHDYKLKLIS
>NC_017763.1|WP_000732088.1|2547023_2547479_+|DUF1307-domain-containing-protein
MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKNDKVLKQSTINTIKYDDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGVSTKENKDISFEKLEKQLKHRGLKEKDKMDDK
>NC_017763.1|WP_000587616.1|2546407_2546665_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDIDWDNL
>NC_017763.1|WP_000074048.1|2546141_2546408_-|Txe/YoeB-family-addiction-module-toxin
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLILSAWSHYD
>NC_017763.1|WP_001076688.1|2544710_2545787_-|M42-family-metallopeptidase
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKGEAEEAGVEVGNMVTPYSEFEVLANNKYLTAKAFDNRYGCALAIEVLQRLKDKNIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAYDTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKKHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDETYKNIMW
>NC_017763.1|WP_000923509.1|2543702_2544365_-|ATP-binding-cassette-domain-containing-protein
MLLEIKDLVYEASDRVILNHINLKVDKGETIAIIGPSGSGKSTFQKIICNLISPTSGTLYFKDKPYDDYEPEILRRHISYLMQQSDLFGETIEDNMIFPSLARNDKFDKKRAKQLIKDVGLGHYQLSSKIEHMSGGERQRIAIARQLMYTPDILLLDESTSALDIHNKEKIENIIFKLADQGVAIMWITHSDDQSMRHFQKRITIVDGQISNIEELNQHE
>NC_017763.1|WP_000072155.1|2542933_2543710_-|iron-export-ABC-transporter-permease-subunit-FetB
MSNTALGLTALLLVIPIIISYKEGLHIIKDLIVATLRAVVQLIILGFLLHYIFKINDKWLLVLCVFVIIVNASWNTISRSSPVMHHVFWISFVAIFVGTALPLAGTIATGAIQFTANEVIPIGGMLANNGLIAINLAYQNLDRAFVQDGTNIESKLSLAATPKLASKGAIRESIRLAIVPTIDSVKTYGLVSIPGMMTGLIIGGVPPLQAIKFQLLVVFIHTTATIMSALIATYLSYGQFFNARHQLVARNTDVKSES
>NC_017763.1|WP_000026196.1|2541352_2542540_-|MFS-transporter
MSIMRLFTFILSIFIVGMVEMMVAGIMNLMSQDLHVSEAVVGQLVTMYALTFAICGPILVKLTNRFSSRPVLLWTLLIFIIGNGIIAVAPNFSILVVGRIISSAAAALIIVKVLAITAMLSAPKNRGKMIGLVYTGFSGANVFGVPIGTVIGDLVGWRYTFLFLIIVSIIVGFLMMIYLPKDQEIQRGSVNHEAPSHENHVTSKILRPAEVAKYLIITFLVLIANSVTFVFINPLILSNGHDMSFVSLALLVNGIAGVIGTSLGGIFSDKITSKRWLMISVSIFIVMMLLMNLILPGSGLLLAGLFIWNIMQWSTNPAVQSGVIQHVEGDTSQVMSWNMSSLNAGIGVGGIIGGLVMTHVSVQAITYTSAIIGALGLIVVLTLKNNHYAKTFKSS
>NC_017763.1|WP_000700931.1|2539938_2541291_+|carboxylesterase/lipase-family-protein
MKINTTGGQIYGITQDRLDIFLGIPYAEPPVHDNRFKHSTLKTQWSEPIDATEIQPIPPQPDNKLEDFFSSQSATFTEHEDCLYLNIWKQHNDQSKKPVIIYFYGGSFENGHGTAELYQPAHLVQNNDIIVITCNYRLGALGYLDWSYFNKGFHSNNGLSDQINVIKWVHQFIESFGGDANNITLMGQSAGSMSILTLLKIPDIEPYFHKVVLLSGALRLDTLESARNKAQHFQKMMLDYIDTDDVTSLSTDDILMLMAKLKQSRGPSKGLDLIYAPIKTDYIQNNYPTTKPIFACYTKDEGDIYITSEQKKLSPQRFIDIMELNDIPLKYEDVQTAKQQSLAITHCYFKQPMKQFLQQLNIQDSNAQLWLAEFAWHDTSSAHYRSAYHILDMIFWFGNLQILSAHQYPITDHLKFLSRQMQNDLANFAKSGKMPWPIYHNERRYYRTYQ
>NC_017763.1|WP_000675402.1|2550633_2551827_-|MFS-transporter
MKGAMAWPFLRLYILTLMFFSANAILNVFIPLRGHDLGATNTVIGIVMGAYMLTAMVFRPWAGQIIARVGPIKVLRIILIINAIALIIYGFTGLEGYFVARVMQGVCTAFFSMSLQLGIIDALPEEHRSEGVSLYSLFSTIPNLIGPLVAVGIWNANNISLFAIVIIFIALTTTFFGYRVTFAEQEPDTSDKIEKMPFNAVTVFAQFFKNKELLNSGIIMIVASIVFGAVSTFVPLYTVSLGFANAGIFLTIQAIAVVAARFYLRKYIPSDGMWHPKYMVSVLSLLVIASFVVAFGPQVGAIIFYGSAILIGMTQAMVYPTLTSYLSFVLPKVGRNMLLGLFIACADLGISLGGALMGPISDLVGFKWMYLICGMLVIVIMIMSLLKKPTPRPANSL
>NC_017763.1|WP_000590511.1|2551838_2552588_-|ABC-transporter-ATP-binding-protein
MIKIKDVEKSYQSAHVFKRRRTPIVKGVSFECPIGATIAIIGESGSGKSTLSRMILGIEKPDKGCVTLNDHPMHKKKVRRHQIGAVFQDYTSSLHPFQTVREILFEVMCQCDGQPKDVMEVQAITLLEEVGLSKAYMDKYPNMLSGGEAQRVAIARAICINPKYILFDEAISSLDMSIQTQILDLLIHLRETRQLSYIFITHDIQAATYLCDQLIIFKNGKIEEQIPTSALHKSDNAYTRELIEKQLSF
>NC_017763.1|WP_000173863.1|2552580_2553396_-|ABC-transporter-ATP-binding-protein
MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGDITFDGKPMLSLSEAQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLHHPKHVYTKYLLSTKKKINDHFKHVMRGDVHD
>NC_017763.1|WP_000584770.1|2553392_2554262_-|ABC-transporter-permease
MIILKRLLQDKGAVVALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFPSYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
>NC_017763.1|WP_000472245.1|2554258_2555194_-|ABC-transporter-permease
MFKFILKRIALMFPLVIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYGFNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIIFNTLADIINALLNPRLREGAR
>NC_017763.1|WP_001229093.1|2555206_2556805_-|staphylopine-dependent-metal-ABC-transporter-substrate-binding-protein-CntA
MRKLTKMSAMLLASGLILTGCGGNKGLEEKKENKQLTYTTVKDIGDMNPHVYGGSMSAESMIYEPLVRNTKDGIKPLLSKKWDVSEDGKTYTFHLRDDVKFHDGTPFDADAVKKNIDAVQENKKLHSWLKISTLIDNVKVKDKYTVELNLKEAYQPALAELAMPRPYVFVSPKDFKNGTTKDGVKKFDGTGPFKLGEHKKDESADFNKNDQYWGEKSKLNKVQAKVMPAGETAFLSMKKGETNFAFTDDRGTDSLDKDSLKQLKDTGDYQVKRSQPMNTKMLVVNSGKKDNAVSDKTVRQAIGHMVNRDKIAKEILDGQEKPATQLFAKNVTDINFDMPTRKYDLKKAESLLDEAGWKKGKDSDVRQKDGKNLEMAMYYDKGSSSQKEQAEYLQAEFKKMGIKLNINGETSDKIAERRTSGDYDLMFNQTWGLLYDPQSTIAAFKAKNGYESATSGIENKDKIYNSIDDAFKIQNGKERSDAYKNILKQIDDEGIFIPISHGSMTVVAPKDLEKVSFTQSQYELPFNEMQYK
>NC_017763.1|WP_000040602.1|2556947_2558249_-|staphylopine-dehydrogenase-CntM
MSKLLMIGTGPVAIQLANICYLKSDYEIDMVGRASTSEKSKRLYQAYKKEKQFEVKIQNEAHQHLEGNFEINRLYKDVKNVKGEYETVVMACTADAYYDTLQQLSLETLQSVKHVILISPTFGSQMIVEQFMSKFNKDIEVISFSTYLGDTRIVDKEAPNHVLTTGVKKKLYMGSTHSNSTMCQRISALAEQLKIQLEVVESPLHAETRNSSLYVHPPLFMNDFSLKAIFEGTDVPVYVYKLFPEGPITMTLIREMRLMWKEMMAILQAFRVPSVNLIQFMVKENYPVRPETLDEGDIEHFEILPDILQEYLLYVRYTAILIDPFSQPDENGHYFDFSAVPFKQVYKNEQDVVQIPRMPSEDYYRTAMIQHIGKMLGIKTPMIDQFLTRYEASCQAYKDMHQDQQLSSQFNTNLFEGDKALVTKFLEINRTLS
>NC_017763.1|WP_001058843.1|2558241_2559060_-|D-histidine-(S)-2-aminobutanoyltransferase-CntL
MNNFNNEIKLILQQYLEKFEAHYERVLQDDQYIEALETLMDDYSEFILNPIYEQQFNAWRDVEEKAQLIKSLQYITAQCVKQVEVIRARRLLDGQASTTGYFDNIEHCIDEEFGQCSIASNDKLLLVGSGAYPMTLIQVAKETGASVIGIDIDPQAVDLGRRIVNVLAPNEDITITDQKVSELKDIKDVTHIIFSSTIPLKYSILEELYDLTNENVVVAMRFGDGIKAIFNYPSQETAEDKWQCVNKHMRPQQIFDIALYKKAAIKVGITDV
>NC_017763.1|WP_001081683.1|2559070_2559892_-|histidine-racemase-CntK
MNRQVIEFSKYNPSGNMTILVHSKHDASEYASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVMSGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVESYVRKQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE
>NC_017763.1|WP_000910578.1|2560770_2561136_-|hypothetical-protein
MLKEKESFRLLYQAIREIADKIGDNQLETNSVSLLLLDFDFEHEVFDELYLAILKYLNTVSIENISHSELLNLIENTIPEDREINTFVKNKIIIGFANNYFPELQVLANEIKSDMASSLKQ

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Crispr_ID: NC_017763_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017763_7

2676258-2676339

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017763_7

>merge|NC_017763|7|2676258-2676339|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>NC_017763|7|7|2676258-2676339|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017763.1\|WP_000697134.1\|2675809_2676040_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|226677
NC_017763.1\|WP_000751274.1\|2671548_2672250_-\|lytic-transglycosylase-IsaA	unknown	unknown	gnl\|CDD\|381607
NC_017763.1\|WP_001791985.1\|2674039_2674168_-\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_000161828.1\|2678657_2679362_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NC_017763.1\|WP_000616227.1\|2676443_2676821_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226134
NC_017763.1\|WP_000895186.1\|2683696_2685037_-\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
NC_017763.1\|WP_001789900.1\|2674322_2674892_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_017763.1\|WP_000651839.1\|2676837_2677659_-\|NmrA/HSCARG-family-protein	unknown	unknown	gnl\|CDD\|187561
NC_017763.1\|WP_000154459.1\|2670784_2671273_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_017763.1\|WP_000448903.1\|2680489_2681320_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017763.1\|WP_000379833.1\|2668458_2670270_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_017763.1\|WP_000706527.1\|2682706_2683597_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_017763.1\|WP_000200684.1\|2672857_2673913_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NC_017763.1\|WP_014667759.1\|2675089_2675590_+\|hypothetical-protein	unknown	unknown	unknown
NC_017763.1\|WP_078064694.1\|2666667_2667156_-\|glycosyl-4,4'-diaponeurosporenoate-acyltransferase	unknown	unknown	unknown
NC_017763.1\|WP_000725226.1\|2667330_2668098_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NC_017763.1\|WP_001224183.1\|2678107_2678665_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_017763.1\|WP_000644427.1\|2681460_2682486_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NC_017763.1\|WP_000836420.1\|2679459_2680470_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NC_017763.1\|WP_000055844.1\|2677677_2677977_-\|DUF2316-family-protein	unknown	unknown	gnl\|CDD\|226806

Protein	Function_ID	Function_description	E-value
NC_017763.1\|WP_000697134.1\|2675809_2676040_+\|DUF896-domain-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	6.01061e-31
NC_017763.1\|WP_000751274.1\|2671548_2672250_-\|lytic-transglycosylase-IsaA	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	2.63325e-06
NC_017763.1\|WP_000448903.1\|2680489_2681320_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.86854e-18
NC_017763.1\|WP_000161828.1\|2678657_2679362_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.1238e-67
NC_017763.1\|WP_000616227.1\|2676443_2676821_-\|VOC-family-protein	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.48638e-58
NC_017763.1\|WP_000895186.1\|2683696_2685037_-\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	5.10424e-93
NC_017763.1\|WP_001789900.1\|2674322_2674892_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.43347e-07
NC_017763.1\|WP_000651839.1\|2676837_2677659_-\|NmrA/HSCARG-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.51828e-85
NC_017763.1\|WP_000154459.1\|2670784_2671273_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.33488e-11
NC_017763.1\|WP_000379833.1\|2668458_2670270_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.4224e-84
NC_017763.1\|WP_000706527.1\|2682706_2683597_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.21918e-76
NC_017763.1\|WP_000200684.1\|2672857_2673913_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38046e-117
NC_017763.1\|WP_000644427.1\|2681460_2682486_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.78714e-97
NC_017763.1\|WP_000725226.1\|2667330_2668098_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	9.90876e-31
NC_017763.1\|WP_001224183.1\|2678107_2678665_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.49706e-13
NC_017763.1\|WP_000836420.1\|2679459_2680470_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	2.02807e-77
NC_017763.1\|WP_000055844.1\|2677677_2677977_-\|DUF2316-family-protein	gnl\|CDD\|226806	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown].	1.97434e-38

>NC_017763.1|WP_000697134.1|2675809_2676040_+|DUF896-domain-containing-protein
MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN
>NC_017763.1|WP_014667759.1|2675089_2675590_+|hypothetical-protein
MTSIFVFAYLNNTSDNMLFRQQMIYACLLANVRHSSIVCLNNTCRIVDIRCLNTKIGGIDVSETDESQGFERTHNILNINQSSLGVVTYITNKLKSTLKQHIIIACGKKRIDYRLSYNFYTTYYDNVEIKKIDCEYTYAMPIAILIRHMMSFDNDYFFAQLRHPVL
>NC_017763.1|WP_001789900.1|2674322_2674892_+|TetR/AcrR-family-transcriptional-regulator
MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFLIHHIAHF
>NC_017763.1|WP_001791985.1|2674039_2674168_-|hypothetical-protein
MDFKNEDKIKVYCNNMFEKLPISLSKNSEFCDILFFIVLSYR
>NC_017763.1|WP_000200684.1|2672857_2673913_-|PTS-transporter-subunit-IIC
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG
>NC_017763.1|WP_000751274.1|2671548_2672250_-|lytic-transglycosylase-IsaA
MKKTIMASSLAVALGVTGYAASTGHEAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSNVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
>NC_017763.1|WP_000154459.1|2670784_2671273_-|GNAT-family-N-acetyltransferase
MTINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDEGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKG
>NC_017763.1|WP_000379833.1|2668458_2670270_-|acetyltransferase
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYVIEIVLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK
>NC_017763.1|WP_000725226.1|2667330_2668098_-|CHAP-domain-containing-protein
MKKIVTATIATAGLATIAFAGHDAQAAEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWASAAASSGYTVNNTPKAGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>NC_017763.1|WP_078064694.1|2666667_2667156_-|glycosyl-4,4'-diaponeurosporenoate-acyltransferase
MKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKHIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMITNVPIIIVQRYNRPRLTQLLRILKRRGERHD
>NC_017763.1|WP_000616227.1|2676443_2676821_-|VOC-family-protein
MIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIGQTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGTVVQEPTVSQGFYGAMFKDLDGHHFNFLVC
>NC_017763.1|WP_000651839.1|2676837_2677659_-|NmrA/HSCARG-family-protein
MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIGHPHLSIVEGDLSDSDSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQHIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDERITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSEVTGKSTVIEGEFVSSVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQDYNK
>NC_017763.1|WP_000055844.1|2677677_2677977_-|DUF2316-family-protein
MSLNKEQRRITAEELQAHFEASTLSVQMIAEKLNVTTEDVEKALAMKAPLGIFSHQLQRFIHLVWDVRNVINDNIKENGQTPEPYTYLKGEKEDYWFLR
>NC_017763.1|WP_001224183.1|2678107_2678665_+|TetR/AcrR-family-transcriptional-regulator
MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSDYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFYQELFNFYYDLFKSDDDIYKKFKTDMLLQALSTSVFAFQIEHRHISIEAYRNYLLNIYLDEVERND
>NC_017763.1|WP_000161828.1|2678657_2679362_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIDADGPTGTFINGDGEMPW
>NC_017763.1|WP_000836420.1|2679459_2680470_+|amidohydrolase
MKSITFEEHYVIEDIQKETMNAISADPKGVPMKVMLEGLEKKTGFTNADELSHHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLDVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSSNN
>NC_017763.1|WP_000448903.1|2680489_2681320_+|alpha/beta-hydrolase
METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKDHFTVVAVDRRDYGESELTEPLPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGSSSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDDIVHQILTEGLEKGMKTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWSEFEIRQYTHSDITLDDFTKYNDKITLLNGTDSRGSFPQDVNFYINNETGIPIVDIPGGHLGYIQKPEGFADVLLNMWS
>NC_017763.1|WP_000644427.1|2681460_2682486_+|NADP-dependent-oxidoreductase
MKAIQIKKYNKNRDVQIRDITIPEIKSTEVLVKVAYAAINPLENLTINGSVKLIQNYKMPQTIGNELTGTIVKVGSKVEDYKLGDKIYSRLPIDRIGAFAEYVSIESNAIAKLPKNLNLKTGAAVPLTGLTAYQAITEELKAIPGKTLFIPGGSGSFGQMAVPIAKSLGLKVIVSGSPRLKDQFLAKGVDQYIDYKTENYCEVLSDIDYVIDTLGPNEFDKELSVMKPGGTIVSLINAPNKAFAVKNNFSPFKKLLFGLAGKKFDKKAQKKSIDYRFIFVRSDGEQLKILNKIIEQNNIIPDIDDHIFTIDEIDKALDYTFNHHTNGKVLIRIDNSDNTIY
>NC_017763.1|WP_000706527.1|2682706_2683597_-|GTP-binding-protein
MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVVDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSADVETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTVTSDNKHESLHKTINHQFVQSPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKVPEYLVLIGKGISKEDYQCLEQ
>NC_017763.1|WP_000895186.1|2683696_2685037_-|ferrous-iron-transporter-B
MLEVKYDMRTGHYTPIPNEPHYLVISHADKLNATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGFKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNNQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMLTSLSLVIGVGIIVKIVMLII

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	401826-401853	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	625606-625633	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	795537-795564	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1035564-1035591	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1325643-1325670	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1414388-1414415	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1657718-1657745	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1872217-1872244	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1980980-1981007	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	2334240-2334267	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	2676242-2676269	0	1.0
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	285607-285635	0	1.0
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	804516-804544	0	1.0
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1009589-1009617	0	1.0
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	2514493-2514521	0	1.0
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	2514549-2514577	0	1.0
NC_017763_4	4.1\|1979540\|26\|NC_017763\|CRISPRCasFinder	1979540-1979565	26	NC_017763.1	795557-795582	0	1.0
NC_017763_4	4.1\|1979540\|26\|NC_017763\|CRISPRCasFinder	1979540-1979565	26	NC_017763.1	1981000-1981025	0	1.0
NC_017763_4	4.1\|1979540\|26\|NC_017763\|CRISPRCasFinder	1979540-1979565	26	NC_017763.1	2334260-2334285	0	1.0
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	361733-361760	1	0.964
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	909831-909858	1	0.964
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	2182977-2183005	1	0.966
NC_017763_2	2.1\|625644\|28\|NC_017763\|CRISPRCasFinder	625644-625671	28	NC_017763.1	1979599-1979626	1	0.964
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1111818-1111845	2	0.929
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1777211-1777238	2	0.929
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	1990330-1990357	2	0.929
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	2345048-2345075	2	0.929
NC_017763_1	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	NC_017763.1	2793106-2793133	2	0.929
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	361677-361705	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	625718-625746	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1035621-1035649	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1111760-1111788	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1325701-1325729	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1414445-1414473	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1657662-1657690	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1657775-1657803	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1672250-1672278	2	0.931
NC_017763_1	1.2\|285718\|29\|NC_017763\|CRISPRCasFinder	285718-285746	29	NC_017763.1	1979637-1979665	2	0.931
NC_017763_7	7.1\|2676282\|34\|NC_017763\|CRISPRCasFinder	2676282-2676315	34	NC_017763.1	1009543-1009576	2	0.941

1. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 401826-401853, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

2. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 625606-625633, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

3. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 795537-795564, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

4. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1035564-1035591, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

5. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1325643-1325670, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

6. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1414388-1414415, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

7. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1657718-1657745, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

8. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1872217-1872244, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

9. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1980980-1981007, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

10. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 2334240-2334267, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

11. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 2676242-2676269, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

12. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 285607-285635, mismatch: 0, identity: 1.0

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
*****************************

13. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 804516-804544, mismatch: 0, identity: 1.0

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
*****************************

14. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1009589-1009617, mismatch: 0, identity: 1.0

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
*****************************

15. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 2514493-2514521, mismatch: 0, identity: 1.0

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
*****************************

16. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 2514549-2514577, mismatch: 0, identity: 1.0

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
*****************************

17. spacer 4.1|1979540|26|NC_017763|CRISPRCasFinder matches to position: 795557-795582, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

18. spacer 4.1|1979540|26|NC_017763|CRISPRCasFinder matches to position: 1981000-1981025, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

19. spacer 4.1|1979540|26|NC_017763|CRISPRCasFinder matches to position: 2334260-2334285, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

20. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 361733-361760, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaagcaa	Protospacer
***********************.****

21. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 909831-909858, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaagcaa	Protospacer
***********************.****

22. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 2182977-2183005, mismatch: 1, identity: 0.966

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacattaatg	Protospacer
*********************** *****

23. spacer 2.1|625644|28|NC_017763|CRISPRCasFinder matches to position: 1979599-1979626, mismatch: 1, identity: 0.964

ggtgtgggccccaacacagagaatttca	CRISPR spacer
ggtgtgggccccaacatagagaatttca	Protospacer
****************.***********

24. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1111818-1111845, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcaaaaagaaattctacagacaa	Protospacer
*******.****************.***

25. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1777211-1777238, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaaacaa	Protospacer
***********************..***

26. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 1990330-1990357, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaggaaattctacagacaa	Protospacer
***********.************.***

27. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 2345048-2345075, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcaaaaagaaattctacagacaa	Protospacer
*******.****************.***

28. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to position: 2793106-2793133, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaaacaa	Protospacer
***********************..***

29. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 361677-361705, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

30. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 625718-625746, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcgaaaagacagcttacaataatg	Protospacer
********.**** ***************

31. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1035621-1035649, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

32. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1111760-1111788, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

33. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1325701-1325729, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

34. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1414445-1414473, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

35. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1657662-1657690, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

36. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1657775-1657803, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

37. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1672250-1672278, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctggcgaaaagacagcttacaataatg	Protospacer
********.**** ***************

38. spacer 1.2|285718|29|NC_017763|CRISPRCasFinder matches to position: 1979637-1979665, mismatch: 2, identity: 0.931

agctggcggaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
*****.**.********************

39. spacer 7.1|2676282|34|NC_017763|CRISPRCasFinder matches to position: 1009543-1009576, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagaggaattggatttccaat	Protospacer
******************.*********.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

728124 : 735945

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244413.1\|728124_729180_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|729179_729866_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037805.1\|729840_730314_-	DoxX family protein	NA	NA	NA	NA
WP_001093556.1\|730656_731097_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637680.1\|731376_731961_-	hypothetical protein	NA	NA	NA	NA
WP_001062973.1\|732059_732773_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	9.3e-51	42.7
WP_000941336.1\|732776_733196_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|733197_733866_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604513.1\|734216_734810_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.7e-37	42.4
WP_001217795.1\|734793_735945_+	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.2e-23	36.1

DBSCAN-SWA_2

747918 : 760185

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663028.1\|747918_748974_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.8e-21	26.4
WP_000197261.1\|749134_749677_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429021.1\|750069_750987_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	6.2e-07	22.4
WP_031789463.1\|751077_751179_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|751256_752762_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930014.1\|753099_753600_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068489.1\|753619_754486_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|755286_755685_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855510.1\|755647_757753_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
WP_000562498.1\|757872_758844_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000876310.1\|759213_760185_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2

DBSCAN-SWA_3

936306 : 991186

Lactococcus_phage(37.5%)

protease,bacteriocin,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000448941.1\|936306_937296_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_000258001.1\|937590_937986_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_000093392.1\|938197_938683_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
WP_001217724.1\|939098_939818_+	adaptor protein MecA	NA	NA	NA	NA
WP_000959286.1\|939938_940925_+	competence protein CoiA	NA	NA	NA	NA
WP_000082725.1\|940972_942781_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	5.5e-47	24.5
WP_000896697.1\|943240_944047_-	DsbA family protein	NA	NA	NA	NA
WP_000214070.1\|944069_944435_-	truncated hemoglobin	NA	NA	NA	NA
WP_000224621.1\|944538_945132_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_001242102.1\|945317_945665_+	hypothetical protein	NA	NA	NA	NA
WP_001077683.1\|945681_946317_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_001270834.1\|946333_947143_+	NAD kinase	NA	NA	NA	NA
WP_000669934.1\|947139_947994_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_000062417.1\|948014_949400_+	magnesium transporter	NA	NA	NA	NA
WP_000395146.1\|949409_951254_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA
WP_000933195.1\|951531_952302_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_000933105.1\|952498_953584_-	AI-2E family transporter	NA	NA	NA	NA
WP_000570687.1\|953925_955494_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_001288675.1\|955638_956397_+	esterase family protein	NA	NA	NA	NA
WP_000600387.1\|956590_957100_+	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_001154224.1\|957212_958403_-	MFS transporter	NA	NA	NA	NA
WP_000258645.1\|958380_959556_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_000340119.1\|959988_961473_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_001795833.1\|961453_961714_+	YueH family protein	NA	NA	NA	NA
WP_001049951.1\|961713_963276_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	1.7e-36	28.2
WP_000928413.1\|963577_964381_+	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_075583733.1\|964599_966924_+	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
WP_000021865.1\|966940_968299_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000414178.1\|968437_969949_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_000287265.1\|970437_971007_-	competence protein ComK	NA	NA	NA	NA
WP_000876826.1\|971216_971435_+	IDEAL domain-containing protein	NA	NA	NA	NA
WP_000668821.1\|971515_972502_-	lipoate--protein ligase	NA	NA	NA	NA
WP_000214898.1\|972700_972877_+	YkvS family protein	NA	NA	NA	NA
WP_001033867.1\|972891_973494_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_075583734.1\|974437_974710_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_000870799.1\|974753_976718_+\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_000668623.1\|976720_977041_+	YxeA family protein	NA	NA	NA	NA
WP_001215400.1\|977511_978747_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	3.3e-104	49.1
WP_001095317.1\|978758_979526_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.3e-53	44.6
WP_014667689.1\|979969_980260_-	hypothetical protein	NA	NA	NA	NA
WP_001792054.1\|980400_980538_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
WP_000766009.1\|980626_980983_-	DoxX family protein	NA	NA	NA	NA
WP_075583699.1\|982476_982608_-	hypothetical protein	NA	NA	NA	NA
WP_000867358.1\|982671_982887_-	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	1.5e-07	49.1
WP_000620948.1\|983051_983603_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000070966.1\|983654_984593_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000190611.1\|984774_986136_+	isochorismate synthase MenF	NA	NA	NA	NA
WP_000526685.1\|986122_987796_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_000150210.1\|987782_988586_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_000184947.1\|988578_989400_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_000284457.1\|989637_989967_-	staphostatin B	NA	NA	NA	NA
WP_001089094.1\|990004_991186_-\|protease	cysteine protease staphopain B	NA	NA	NA	NA

DBSCAN-SWA_4

1010897 : 1019370

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001670307.1\|1010897_1011380_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.0e-21	44.0
WP_001010399.1\|1011366_1012491_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174042.1\|1012494_1013199_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	6.2e-47	41.6
WP_000848350.1\|1013198_1013462_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666805.1\|1013463_1014135_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032745.1\|1014127_1016317_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.6e-141	39.8
WP_000483706.1\|1016295_1017780_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000030811.1\|1017772_1018801_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
WP_000238674.1\|1018803_1019370_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.5e-30	40.7

DBSCAN-SWA_5

1279527 : 1285885

Staphylococcus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001789891.1\|1279527_1279725_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4
WP_001789892.1\|1280413_1280638_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	4.3e-18	71.0
WP_001002340.1\|1280931_1281138_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
WP_001788716.1\|1281838_1281949_+	hypothetical protein	NA	NA	NA	NA
WP_000006110.1\|1282376_1282562_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
WP_000477492.1\|1283073_1283178_+	hypothetical protein	NA	NA	NA	NA
WP_000956747.1\|1283306_1283558_+	hypothetical protein	NA	NA	NA	NA
WP_001095317.1\|1283870_1284638_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.3e-53	44.6
WP_001215400.1\|1284649_1285885_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	3.3e-104	49.1

DBSCAN-SWA_6

1483716 : 1569649

107

Staphylococcus_phage(78.48%)

portal,tRNA,integrase,transposase,protease,holin,terminase,plate,capsid,head,tail

attL 1493912:1493929|attR 1570204:1570221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000858795.1\|1483716_1485009_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	4.3e-54	30.0
WP_000525063.1\|1485330_1488024_-	ATP-dependent helicase	A0A1X9I5C8	Streptococcus_phage	3.7e-47	34.4
WP_000049913.1\|1488047_1489019_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_000361546.1\|1489005_1490208_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.9e-35	43.3
WP_000690025.1\|1490212_1491355_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
WP_000839926.1\|1491592_1491910_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_001827022.1\|1492246_1492927_-	zinc metallopeptidase	NA	NA	NA	NA
WP_000154682.1\|1492998_1493586_-	DUF1405 domain-containing protein	NA	NA	NA	NA
WP_000005215.1\|1493575_1494151_-	YpiB family protein	G3MAV7	Bacillus_virus	7.9e-08	26.7
1493912:1493929	attL	NA	NA	NA	NA
WP_000389524.1\|1494164_1495409_-	hypothetical protein	NA	NA	NA	NA
WP_000245908.1\|1495415_1496714_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000776316.1\|1496723_1497788_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_001269918.1\|1497813_1498980_-	chorismate synthase	A0A291AU41	Pandoravirus	2.0e-34	32.1
WP_000789525.1\|1499366_1499567_-	hypothetical protein	NA	NA	NA	NA
WP_000442480.1\|1499776_1500226_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
WP_001096484.1\|1500317_1501277_-	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	1.3e-10	24.4
WP_000774675.1\|1501278_1502004_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_000450555.1\|1502006_1502579_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_001043863.1\|1503009_1503282_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.2e-28	73.3
WP_000161746.1\|1503452_1504451_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000165530.1\|1504467_1505778_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_000133951.1\|1505999_1507175_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_031789482.1\|1507431_1507623_-	hypothetical protein	NA	NA	NA	NA
WP_001805731.1\|1507739_1507856_-	hypothetical protein	NA	NA	NA	NA
WP_000644390.1\|1507886_1508546_-	(d)CMP kinase	NA	NA	NA	NA
WP_000681755.1\|1508622_1509591_+	asparaginase	NA	NA	NA	NA
WP_001174259.1\|1509723_1510692_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
WP_031789483.1\|1510852_1510969_-	hypothetical protein	NA	NA	NA	NA
WP_000069285.1\|1511094_1512546_-	elastin-binding protein EbpS	NA	NA	NA	NA
WP_000902100.1\|1512698_1514078_-	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	6.4e-56	33.3
WP_001163816.1\|1514067_1515021_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001151997.1\|1515128_1515377_+	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
WP_001186912.1\|1515482_1516028_-	ECF transporter S component	NA	NA	NA	NA
WP_001805730.1\|1516429_1517374_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_001805732.1\|1517828_1518737_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_001021507.1\|1518811_1518958_-	hypothetical protein	NA	NA	NA	NA
WP_014667714.1\|1518941_1519877_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_170267452.1\|1519967_1520183_-	hypothetical protein	A0ZS61	Staphylococcus_virus	1.5e-25	100.0
WP_000777019.1\|1520361_1521372_-	restriction endonuclease subunit S	A0A1W6JNN3	Staphylococcus_phage	2.7e-64	41.3
WP_001003363.1\|1521358_1523263_-	N-6 DNA methylase	A0A1W6JNK1	Staphylococcus_phage	0.0e+00	84.5
WP_000861038.1\|1523623_1524379_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|1524390_1524645_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_001791821.1\|1524696_1524804_+	hypothetical protein	NA	NA	NA	NA
WP_011447039.1\|1524856_1525033_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_000466784.1\|1525185_1525485_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_000916020.1\|1525530_1525695_-	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
WP_001166596.1\|1525687_1526077_-	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	4.9e-62	99.2
WP_000067127.1\|1526076_1527543_-\|plate	phage baseplate upper protein	A0A2I6PES7	Staphylococcus_phage	1.5e-273	100.0
WP_000429558.1\|1527542_1529453_-	minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
WP_000179858.1\|1529468_1529759_-	hypothetical protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
WP_000384475.1\|1529758_1531342_-\|tail	phage tail protein	A0A2I6PEQ5	Staphylococcus_phage	3.5e-308	99.8
WP_001190527.1\|1531350_1532175_-\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	7.8e-158	99.6
WP_001003423.1\|1532174_1537847_-\|tail	phage tail tape measure protein	A0A1X9IGU9	Staphylococcus_phage	0.0e+00	85.5
WP_000438833.1\|1537860_1538019_-	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_000589167.1\|1538060_1538411_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
WP_000169127.1\|1538468_1538924_-	Ig domain-containing protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
WP_000807536.1\|1539015_1539657_-\|tail	tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
WP_001023806.1\|1539691_1540087_-	DUF3168 domain-containing protein	A0A2I6PEQ4	Staphylococcus_phage	8.8e-67	100.0
WP_000110023.1\|1540087_1540489_-	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	8.1e-68	100.0
WP_000395498.1\|1540485_1540818_-	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
WP_000050973.1\|1540829_1541108_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
WP_001670346.1\|1541176_1542340_-\|capsid	phage major capsid protein	A0A2I6PEQ3	Staphylococcus_phage	2.1e-217	99.7
WP_000061866.1\|1542351_1543125_-\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
WP_001100664.1\|1543108_1544347_-\|portal	phage portal protein	A0A2I6PER5	Staphylococcus_phage	6.9e-235	100.0
WP_000153554.1\|1544351_1546043_-\|terminase	terminase large subunit	A0A1X9IGU0	Staphylococcus_phage	0.0e+00	99.8
WP_000778932.1\|1546032_1546338_-\|terminase	P27 family phage terminase small subunit	A0A2I6PE27	Staphylococcus_phage	2.9e-49	100.0
WP_000160689.1\|1546466_1546781_-	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	2.5e-56	100.0
WP_000513699.1\|1546937_1547375_-	transcriptional regulator	A0A2I6PDC2	Staphylococcus_phage	4.6e-77	100.0
WP_075583730.1\|1547387_1548755_-	DEAD/DEAH box helicase	A0A2I6PE95	Staphylococcus_phage	1.9e-262	99.8
WP_000665203.1\|1548735_1549026_-	VRR-NUC domain-containing protein	A0A2I6PEN7	Staphylococcus_phage	6.5e-51	100.0
WP_001801650.1\|1549159_1549258_+	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	3.7e-11	100.0
WP_000884844.1\|1549366_1551814_-	virulence-associated E family protein	R4WAL1	Staphylococcus_phage	0.0e+00	100.0
WP_000265258.1\|1551865_1552066_-	DUF1514 family protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
WP_024937088.1\|1552133_1552286_-	transcriptional regulator	A7TWI2	Staphylococcus_phage	1.4e-17	94.0
WP_001623479.1\|1552285_1552672_-	hypothetical protein	A7TWI1	Staphylococcus_phage	3.4e-63	98.4
WP_000483477.1\|1552661_1552898_-	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
WP_000195806.1\|1552922_1553159_-	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	3.1e-35	98.7
WP_000185638.1\|1553195_1553723_-	dUTP pyrophosphatase	A7TWB1	Staphylococcus_phage	7.8e-95	100.0
WP_001065075.1\|1553715_1553964_-	DUF1024 family protein	Q9B0F3	Staphylococcus_virus	2.7e-37	97.6
WP_000132191.1\|1553978_1554221_-	hypothetical protein	A0A2D1G5G2	Staphylococcus_phage	2.8e-39	97.5
WP_000235324.1\|1554235_1554436_-	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
WP_000022728.1\|1554438_1554696_-	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
WP_000113975.1\|1554695_1555097_-	PVL family protein	A0A2I6PF14	Staphylococcus_phage	3.6e-68	98.5
WP_001164629.1\|1555096_1555282_-	DUF3113 family protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
WP_075583731.1\|1555294_1557247_-	DNA polymerase	Q4ZCP5	Staphylococcus_virus	0.0e+00	99.4
WP_000647288.1\|1557315_1557870_-	DUF2815 family protein	M9QRS1	Staphylococcus_phage	1.4e-99	100.0
WP_000762534.1\|1557895_1559062_-	DUF2800 domain-containing protein	R4WAL0	Staphylococcus_phage	7.0e-221	99.7
WP_000985986.1\|1559058_1559421_-	hypothetical protein	Q4ZCP8	Staphylococcus_virus	2.2e-56	100.0
WP_000175000.1\|1559435_1559759_-	hypothetical protein	A0A2I6PDL5	Staphylococcus_phage	1.3e-52	100.0
WP_001285954.1\|1559837_1559999_-	DUF1270 domain-containing protein	A7TWM3	Staphylococcus_phage	8.6e-21	100.0
WP_001124160.1\|1560011_1560275_-	helix-turn-helix domain-containing protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
WP_001097552.1\|1560299_1560515_-	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
WP_001128433.1\|1560569_1560935_+	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
WP_001025401.1\|1560903_1561149_-	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
WP_000773059.1\|1561215_1561596_+	DUF2513 domain-containing protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
WP_001148860.1\|1561582_1561780_-	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
WP_000362644.1\|1561849_1562062_+	hypothetical protein	D2JGJ1	Staphylococcus_phage	7.6e-33	100.0
WP_000771849.1\|1562102_1562252_-	hypothetical protein	D2JGJ0	Staphylococcus_phage	1.4e-20	100.0
WP_000435357.1\|1562266_1562710_-	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
WP_000213811.1\|1562757_1562970_-	helix-turn-helix transcriptional regulator	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
WP_000511090.1\|1563121_1563853_+	helix-turn-helix transcriptional regulator	S4SVC5	Staphylococcus_phage	1.3e-132	99.2
WP_000705240.1\|1563923_1564106_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_001795334.1\|1564142_1564289_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-16	100.0
WP_000191464.1\|1564285_1564900_-	hypothetical protein	M9QRQ8	Staphylococcus_phage	2.5e-105	99.5
WP_000264751.1\|1565025_1566231_+\|integrase	site-specific integrase	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
WP_001095317.1\|1567634_1568402_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.3e-53	44.6
WP_001215400.1\|1568413_1569649_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	3.3e-104	49.1
1570204:1570221	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1629261 : 1637591

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1629261_1630047_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924214.1\|1630172_1631063_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062179.1\|1631072_1632419_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	9.1e-55	33.7
WP_000683937.1\|1632532_1633633_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_000624578.1\|1633635_1634313_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1634443_1635550_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217257.1\|1635773_1637591_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3

DBSCAN-SWA_8

1707037 : 1716080

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364542.1\|1707037_1707556_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000595017.1\|1707577_1709851_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.1e-63	29.0
WP_000749795.1\|1710053_1712333_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1712607_1712868_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1712886_1714026_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001008435.1\|1714048_1715074_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|1715075_1716080_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_9

1839037 : 1909964

Staphylococcus_phage(86.67%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001050580.1\|1839037_1845607_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	1.9e-294	92.6
WP_000836465.1\|1845932_1846244_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_001670372.1\|1846265_1848683_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
WP_001025067.1\|1848970_1850152_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
WP_000526539.1\|1850262_1851216_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764423.1\|1851212_1851776_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	2.2e-103	100.0
WP_000757543.1\|1851895_1852297_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266084.1\|1853876_1854704_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001790712.1\|1854706_1854826_-	hypothetical protein	NA	NA	NA	NA
WP_001196354.1\|1854937_1855939_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001008551.1\|1856060_1856525_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001159035.1\|1856537_1857719_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
WP_000493892.1\|1857729_1858362_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
WP_000077350.1\|1858368_1859412_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
WP_001261675.1\|1859892_1861395_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000221190.1\|1861921_1862236_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
WP_000989106.1\|1862235_1863528_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	7.5e-216	94.2
WP_000163242.1\|1863545_1863941_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	4.5e-71	96.9
WP_000592652.1\|1864570_1865713_-	MFS transporter	NA	NA	NA	NA
WP_001032833.1\|1867204_1868059_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1868334_1868559_-	hypothetical protein	NA	NA	NA	NA
WP_000671043.1\|1868757_1869228_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.8e-66	83.9
WP_001152696.1\|1869340_1869784_+	competence protein ComK	NA	NA	NA	NA
WP_001030459.1\|1869770_1870214_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.9e-49	77.2
WP_001168916.1\|1870511_1871147_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000492905.1\|1871313_1871934_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001096494.1\|1872330_1873044_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091443.1\|1873302_1873605_+	hypothetical protein	NA	NA	NA	NA
WP_001200540.1\|1873860_1874226_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.8e-59	99.2
WP_000623485.1\|1874222_1874576_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.9e-20	82.9
WP_000453297.1\|1876671_1877505_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.0e-158	99.3
WP_000366153.1\|1877721_1878630_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	2.9e-137	98.7
WP_000933826.1\|1878754_1879948_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-217	99.5
WP_000109899.1\|1880318_1881911_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_075583752.1\|1882288_1883035_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.8e-141	97.6
WP_000672017.1\|1883039_1883513_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.6e-83	98.1
WP_000718108.1\|1883578_1883836_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.0e-40	90.6
WP_000778514.1\|1883832_1884834_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.8e-186	97.9
WP_000348357.1\|1884838_1886317_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-283	97.6
WP_012840523.1\|1886475_1886931_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
WP_000070659.1\|1887962_1888958_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-70	95.2
WP_000669029.1\|1889033_1889660_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	6.4e-88	91.8
WP_000627536.1\|1889700_1890042_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	2.5e-54	92.9
WP_001095317.1\|1890742_1891510_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.3e-53	44.6
WP_001215400.1\|1891521_1892757_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	3.3e-104	49.1
WP_000864144.1\|1893114_1893684_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	1.2e-77	95.0
WP_000809864.1\|1893869_1894055_-	hypothetical protein	NA	NA	NA	NA
WP_000375476.1\|1894056_1894233_-	hypothetical protein	NA	NA	NA	NA
WP_000070809.1\|1894243_1894627_-	hypothetical protein	NA	NA	NA	NA
WP_001805677.1\|1894808_1895033_-\|transposase	IS3 family transposase	A0A2H4PQV6	Staphylococcus_phage	6.8e-24	86.8
WP_001670380.1\|1895206_1895311_-\|transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	7.2e-05	87.5
WP_001801861.1\|1895455_1895551_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_001791232.1\|1895673_1895775_+	hypothetical protein	NA	NA	NA	NA
WP_001036002.1\|1896118_1896496_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000759947.1\|1896701_1897142_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000926708.1\|1897186_1898800_+	lipase	NA	NA	NA	NA
WP_000095392.1\|1898814_1899114_+	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_000162901.1\|1899430_1900612_-	hypothetical protein	NA	NA	NA	NA
WP_000230031.1\|1900604_1901459_-	DNA processing protein DprA	NA	NA	NA	NA
WP_075583750.1\|1901688_1902213_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_094752959.1\|1902283_1903412_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	5.2e-80	54.7
WP_000736712.1\|1904641_1905418_-	staphylococcal enterotoxin type G	NA	NA	NA	NA
WP_001236362.1\|1905700_1906456_-	staphylococcal enterotoxin type N	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
WP_000764690.1\|1906494_1907265_-	staphylococcal enterotoxin type C1/U	A0A097PAT7	Streptococcus_pyogenes_phage	6.3e-45	43.6
WP_000713843.1\|1907418_1908147_-	staphylococcal enterotoxin type I	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
WP_000821657.1\|1908181_1908901_-	staphylococcal enterotoxin type M	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
WP_010922839.1\|1909181_1909964_-	staphylococcal enterotoxin type O	A0A1X9H080	Staphylococcus_phage	1.1e-31	36.7

DBSCAN-SWA_10

1993881 : 2091117

117

Staphylococcus_phage(84.15%)

portal,integrase,tRNA,transposase,protease,holin,terminase,tail,capsid,head

attL 2062186:2062203|attR 2089104:2089121

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000170162.1\|1993881_1994184_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957011.1\|1994549_1996088_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831695.1\|1996176_1997376_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774565.1\|1997388_1999392_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
WP_000992924.1\|1999395_2001588_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272061.1\|2001584_2002277_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|2002448_2002751_-	hypothetical protein	NA	NA	NA	NA
WP_000572872.1\|2002859_2004155_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827758.1\|2005014_2006181_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434933.1\|2006211_2006538_+	staphostatin A	NA	NA	NA	NA
WP_000669863.1\|2008085_2008259_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|2008239_2008842_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040871.1\|2009112_2009934_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	7.9e-70	53.1
WP_000284433.1\|2009926_2011396_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
WP_000897635.1\|2011579_2012656_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177821.1\|2012675_2013470_+	prephenate dehydratase	NA	NA	NA	NA
WP_001802312.1\|2013541_2013649_+	hypothetical protein	NA	NA	NA	NA
WP_000323166.1\|2013659_2015222_-	SLC13 family permease	NA	NA	NA	NA
WP_000275725.1\|2015426_2016524_-	pectate lyase	U5PWM6	Bacillus_phage	1.6e-46	34.3
WP_000149686.1\|2016895_2017456_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|2017508_2018438_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001790680.1\|2018632_2018806_-	hypothetical protein	NA	NA	NA	NA
WP_001021228.1\|2018857_2020237_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181322.1\|2020356_2021385_-	lactonase family protein	NA	NA	NA	NA
WP_001284658.1\|2021843_2022224_-	penicillinase repressor BlaI	NA	NA	NA	NA
WP_001096369.1\|2022213_2023971_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_000733621.1\|2024077_2024923_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	3.4e-31	34.3
WP_000612780.1\|2025236_2025647_+	YolD-like family protein	U3PG23	Staphylococcus_phage	1.4e-30	54.2
WP_000514485.1\|2025675_2026041_-	hypothetical protein	NA	NA	NA	NA
WP_000026854.1\|2026049_2028113_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000706211.1\|2028115_2029228_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	8.7e-11	31.0
WP_000267034.1\|2029773_2029947_-	hypothetical protein	NA	NA	NA	NA
WP_001188075.1\|2030396_2031437_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713068.1\|2031493_2032336_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033968.1\|2032332_2032890_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|2032949_2033474_-	membrane protein	NA	NA	NA	NA
WP_000182843.1\|2033594_2034158_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221654.1\|2034223_2034964_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|2034963_2035836_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645731.1\|2035832_2036513_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991299.1\|2036513_2037410_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	6.5e-17	30.2
WP_000691586.1\|2037406_2037787_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681967.1\|2038063_2038222_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|2038464_2038563_-	hypothetical protein	NA	NA	NA	NA
WP_001068520.1\|2038762_2040049_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000669724.1\|2040327_2042376_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669789.1\|2043333_2043513_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001791826.1\|2043823_2044084_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702263.1\|2044136_2044487_-	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_000727649.1\|2045171_2045621_+	chemotaxis-inhibiting protein CHIPS	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
WP_000919349.1\|2046700_2047192_-	staphylokinase	A0A1X9H028	Staphylococcus_phage	1.2e-86	99.4
WP_000861039.1\|2047382_2048138_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	2.2e-151	99.6
WP_000611512.1\|2048149_2048404_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_001791821.1\|2048455_2048563_+	hypothetical protein	NA	NA	NA	NA
WP_011447039.1\|2048615_2048792_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_000539688.1\|2048941_2049238_-	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_001040261.1\|2049295_2049583_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_001153681.1\|2049629_2049782_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_000582168.1\|2049771_2053557_-	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.4
WP_000567389.1\|2053572_2055057_-\|tail	phage tail family protein	A0A068A242	Staphylococcus_phage	2.0e-297	99.8
WP_014667731.1\|2055053_2059583_-\|tail	phage tail tape measure protein	A0EX03	Staphylococcus_phage	0.0e+00	96.8
WP_001549167.1\|2059639_2059777_-	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
WP_001096355.1\|2059827_2060178_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_094969686.1\|2060228_2060534_-	Ig-like domain-containing protein	A0A075LYE8	Staphylococcus_phage	1.5e-29	93.2
WP_000985141.1\|2060494_2061136_-\|tail	phage tail protein	A0A1W6JPP5	Staphylococcus_phage	1.1e-119	100.0
WP_000565498.1\|2061136_2061544_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000755150.1\|2061940_2062303_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2062186:2062203	attL	NA	NA	NA	NA
WP_000150936.1\|2062286_2062571_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238240.1\|2062560_2062845_-	hypothetical protein	A0A1W6JPL8	Staphylococcus_phage	2.3e-45	100.0
WP_000154567.1\|2062864_2064010_-\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	1.9e-215	100.0
WP_000861911.1\|2064032_2064770_-\|protease	Clp protease ClpP	A0A1W6JPK0	Staphylococcus_phage	1.8e-129	100.0
WP_000025268.1\|2064753_2065917_-\|portal	phage portal protein	A0A1W6JPQ9	Staphylococcus_phage	1.8e-216	100.0
WP_000625086.1\|2065932_2067594_-\|terminase	terminase large subunit	Q8LTH3	Staphylococcus_phage	0.0e+00	99.8
WP_000402904.1\|2067590_2067935_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988333.1\|2068065_2068365_-	HNH endonuclease	A0A1W6JPL7	Staphylococcus_phage	2.7e-52	100.0
WP_000590122.1\|2068596_2069013_-	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_000265043.1\|2069040_2069241_-	DUF1514 family protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
WP_000595265.1\|2069240_2069390_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_170267442.1\|2069386_2069776_-	hypothetical protein	A0A1W6JPK8	Staphylococcus_phage	8.9e-64	100.0
WP_000608280.1\|2069765_2070002_-	hypothetical protein	A0A2I6PDD1	Staphylococcus_phage	4.8e-36	98.7
WP_000195809.1\|2069994_2070282_-	DUF1381 domain-containing protein	Q4ZAB6	Staphylococcus_virus	2.4e-45	98.9
WP_000185642.1\|2070318_2070852_-	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	2.1e-92	97.2
WP_000714409.1\|2070844_2071015_-	hypothetical protein	A7TWH6	Staphylococcus_phage	2.2e-22	94.6
WP_001065084.1\|2071001_2071256_-	DUF1024 family protein	A0A2I6PDI5	Staphylococcus_phage	2.1e-37	96.4
WP_001105621.1\|2071248_2071533_-	hypothetical protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
WP_094752959.1\|2071710_2072839_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	5.2e-80	54.7
WP_000982709.1\|2072836_2073205_-	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	1.1e-60	100.0
WP_000693615.1\|2073392_2073779_-	hypothetical protein	I1W655	Staphylococcus_phage	4.1e-69	100.0
WP_000131377.1\|2073792_2074035_-	hypothetical protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
WP_000101270.1\|2074038_2074407_-	hypothetical protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
WP_000401966.1\|2074419_2074824_-	RusA family crossover junction endodeoxyribonuclease	A0A0E3XBN4	Staphylococcus_phage	4.2e-72	99.3
WP_000338528.1\|2074832_2075051_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000148299.1\|2075057_2075942_-	DnaD domain protein	S4V6D4	Staphylococcus_phage	3.1e-136	95.6
WP_000610647.1\|2075971_2076442_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	9.7e-81	99.4
WP_075583747.1\|2076442_2077012_-	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	2.5e-86	99.4
WP_000138481.1\|2077140_2078061_-	recombinase RecT	A0A1V0E5D7	Staphylococcus_phage	1.0e-166	100.0
WP_000700571.1\|2078062_2080006_-	AAA family ATPase	I1W619	Staphylococcus_phage	0.0e+00	100.0
WP_001205732.1\|2080014_2080278_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291488.1\|2080286_2080547_-	DUF1108 family protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
WP_000066011.1\|2080639_2080801_-	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
WP_001120936.1\|2080797_2081118_-	DUF771 domain-containing protein	A0A1W6JPI1	Staphylococcus_phage	7.4e-56	100.0
WP_001662405.1\|2081193_2081331_-	hypothetical protein	A0ZS11	Staphylococcus_virus	3.7e-17	97.8
WP_000435343.1\|2081350_2081611_-	hypothetical protein	A0A2I6PDT7	Staphylococcus_phage	3.5e-40	100.0
WP_001148590.1\|2081623_2082373_-	phage antirepressor KilAC domain-containing protein	A0A1W6JPN2	Staphylococcus_phage	2.0e-136	100.0
WP_000772137.1\|2082429_2082639_+	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
WP_000939495.1\|2082631_2082772_-	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
WP_000435349.1\|2082786_2083233_-	hypothetical protein	A0A1W6JPI3	Staphylococcus_phage	1.9e-78	100.0
WP_000639923.1\|2083245_2083488_-	DUF739 family protein	A0A1X9H035	Staphylococcus_phage	1.6e-39	100.0
WP_001083973.1\|2083651_2084368_+	helix-turn-helix domain-containing protein	A0A1X9H038	Staphylococcus_phage	1.2e-130	99.6
WP_001557601.1\|2084379_2085234_+	restriction endonuclease	A0A1X9H037	Staphylococcus_phage	7.3e-151	100.0
WP_000345949.1\|2085307_2085454_+	hypothetical protein	A0A1X9H032	Staphylococcus_phage	3.3e-19	100.0
WP_000109189.1\|2085450_2085636_+	hypothetical protein	U5U7D6	Staphylococcus_phage	2.3e-25	100.0
WP_000705236.1\|2085706_2085889_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	3.4e-26	98.3
WP_001549185.1\|2085966_2086680_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
WP_000857198.1\|2086870_2087908_+\|integrase	site-specific integrase	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
WP_000595402.1\|2089026_2090043_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	3.9e-26	29.3
2089104:2089121	attR	NA	NA	NA	NA
WP_000791416.1\|2090064_2091117_-	bi-component leukocidin LukGH subunit H	A0A2I6PDF3	Staphylococcus_phage	1.3e-35	32.1

Anti-CRISPR protein detection

Acr_ID: NC_017763.1|WP_000384171.1|1868334_1868559_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017763.1|WP_000384171.1|1868334_1868559_-|hypothetical-protein

1868334_1868559_-

74 aa aa

1839037-1909964

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_017763_1	Orphan	1.1\|285663\|28\|NC_017763\|CRISPRCasFinder	285663-285690	28	1872217-1872244	0

1. spacer 1.1|285663|28|NC_017763|CRISPRCasFinder matches to NC_017763 position: 1872217-1872244, mismatch: 0

gaatttcgaaaagaaattctacaggcaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
****************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017763

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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