CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017768	Streptococcus mutans LJ23, complete genome	2 crisprs	DEDDh,csa3,cas3,WYL,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,csn2,DinG,csm6	0	10	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017768_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017768_1

430283-431241

TypeI

I-C

Consensus_repeat	Method
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	PILER-CR
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCNCCCTTCACGGGTGCGTGGATTGAAAT	CRT

14 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

The CRISPR arrays of NC_017768_1

>merge|NC_017768|1|430283-431241|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCCTTCACGGGTGCGTGGATTGAAATTCAAACAACATGCTTATCCGGTGATAACACTGACGTCGCACCCTTCACGGGTGCGTGGATTGAAATTGTTACGTGCTCCAAAAAATCAATTGGTACAGTCGTCGCACCCTTCACGGGTGCGTGGATTGAAATTTTTAATGTCTCATAAACTTGGTTGCCATCTATAGTCGCACCCTTCACGGGTGCGTGGATTGAAATAAATTTGGGGCAGTGATTATGACGGGACTTACTTTGTCGCACCCTTCACGGGTGCGTGGATTGAAATAATTTGGAAGTGTCAAAAAAGGCCTCCCGGAACGTCGCACCCTTCACGGGTGCGTGGATTGAAATCAATGGTGTAGCTGAAATCTCACAACAAAAAGCTGTCGCACCCTTCACGGGTGCGTGGATTGAAATTCTAGCAGTGTAGTTGTTGTTGTTTTGTTACGATGTCGCACCCTTCACGGGTGCGTGGATTGAAATATCTACTTTGATAAAGACACAAAAACACTTGACTGTCGCACCCTTCACGGGTGCGTGGATTGAAATCAAAAAGTCGATTGGTACAGTCCAACTTTGATTACGTCGCCCCCTTCACGGGTGCGTGGATTGAAATAATAGATGCGTCCACTATAATTACACCTACCATCTGTCGCCCCCTTCACGGGTGCGTGGATTGAAATTAAAGCTGATGTAAAAGCCGATAGTCCTTTGCGCGTCGCCCCCTTCACGGGTGCGTGGATTGAAATCTAAGCGCTCGGAGGCCGTGTTATTAGATAACTTGTCGCCCCCTTCACGGGTGCGTGGATTGAAATTTAATTTGTTGGGTGGAGCTACTTCTATCACTAAAGGTCGCCCCCTTCACGGGTGCGTGGATTGAAATACAACGAAAAAACACTCAGTGATTTTGGATTTAGTCGCCCCCTTCACGGGTGCGTGGATTGAAAT

>NC_017768|1|1|430283-431241|PILER-CR
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TCAAACAACATGCTTATCCGGTGATAACACTGAC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TGTTACGTGCTCCAAAAAATCAATTGGTACAGTC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TTTTAATGTCTCATAAACTTGGTTGCCATCTATA
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	AAATTTGGGGCAGTGATTATGACGGGACTTACTTT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	AATTTGGAAGTGTCAAAAAAGGCCTCCCGGAAC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	CAATGGTGTAGCTGAAATCTCACAACAAAAAGCT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TCTAGCAGTGTAGTTGTTGTTGTTTTGTTACGAT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	ATCTACTTTGATAAAGACACAAAAACACTTGACT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	CAAAAAGTCGATTGGTACAGTCCAACTTTGATTAC
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	AATAGATGCGTCCACTATAATTACACCTACCATCT
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	TAAAGCTGATGTAAAAGCCGATAGTCCTTTGCGC
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	CTAAGCGCTCGGAGGCCGTGTTATTAGATAACTT
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	TTAATTTGTTGGGTGGAGCTACTTCTATCACTAAAG
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	ACAACGAAAAAACACTCAGTGATTTTGGATTTA
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT

>NC_017768|1|1|430283-431241|CRISPRCasFinder
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TCAAACAACATGCTTATCCGGTGATAACACTGAC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TGTTACGTGCTCCAAAAAATCAATTGGTACAGTC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TTTTAATGTCTCATAAACTTGGTTGCCATCTATA
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	AAATTTGGGGCAGTGATTATGACGGGACTTACTTT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	AATTTGGAAGTGTCAAAAAAGGCCTCCCGGAAC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	CAATGGTGTAGCTGAAATCTCACAACAAAAAGCT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TCTAGCAGTGTAGTTGTTGTTGTTTTGTTACGAT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	ATCTACTTTGATAAAGACACAAAAACACTTGACT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	CAAAAAGTCGATTGGTACAGTCCAACTTTGATTAC
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	AATAGATGCGTCCACTATAATTACACCTACCATCT
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	TAAAGCTGATGTAAAAGCCGATAGTCCTTTGCGC
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	CTAAGCGCTCGGAGGCCGTGTTATTAGATAACTT
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	TTAATTTGTTGGGTGGAGCTACTTCTATCACTAAAG
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	ACAACGAAAAAACACTCAGTGATTTTGGATTTA
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT

>NC_017768|1|1|430283-431241|CRT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TCAAACAACATGCTTATCCGGTGATAACACTGAC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TGTTACGTGCTCCAAAAAATCAATTGGTACAGTC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TTTTAATGTCTCATAAACTTGGTTGCCATCTATA
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	AAATTTGGGGCAGTGATTATGACGGGACTTACTTT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	AATTTGGAAGTGTCAAAAAAGGCCTCCCGGAAC
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	CAATGGTGTAGCTGAAATCTCACAACAAAAAGCT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	TCTAGCAGTGTAGTTGTTGTTGTTTTGTTACGAT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	ATCTACTTTGATAAAGACACAAAAACACTTGACT
GTCGCACCCTTCACGGGTGCGTGGATTGAAAT	CAAAAAGTCGATTGGTACAGTCCAACTTTGATTAC
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	AATAGATGCGTCCACTATAATTACACCTACCATCT
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	TAAAGCTGATGTAAAAGCCGATAGTCCTTTGCGC
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	CTAAGCGCTCGGAGGCCGTGTTATTAGATAACTT
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	TTAATTTGTTGGGTGGAGCTACTTCTATCACTAAAG
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT	ACAACGAAAAAACACTCAGTGATTTTGGATTTA
GTCGCCCCCTTCACGGGTGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017768.1\|WP_014677801.1\|420268_420514_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350305
NC_017768.1\|WP_002301147.1\|419915_420131_+\|hypothetical-protein	unknown	unknown	unknown
NC_017768.1\|WP_002300589.1\|442919_443897_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_017768.1\|WP_014677813.1\|441365_442157_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180910
NC_017768.1\|WP_002264078.1\|439102_440461_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NC_017768.1\|WP_002262534.1\|444283_445249_+\|enoyl-[acyl-carrier-protein]-reductase-FabK	unknown	unknown	gnl\|CDD\|132195
NC_017768.1\|WP_014677805.1\|425385_427281_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
NC_017768.1\|WP_002262537.1\|446969_448202_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|235987
NC_017768.1\|WP_044560274.1\|422016_424413_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_017768.1\|WP_002262531.1\|442485_442920_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_017768.1\|WP_014677807.1\|428137_428809_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NC_017768.1\|WP_014677802.1\|420797_421772_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_017768.1\|WP_014677808.1\|428805_429831_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_017768.1\|WP_014677806.1\|427284_428136_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_017768.1\|WP_014677814.1\|445251_446172_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NC_017768.1\|WP_002280569.1\|429841_430135_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_017768.1\|WP_002262533.1\|443956_444181_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NC_017768.1\|WP_002262529.1\|440559_441204_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NC_017768.1\|WP_014677804.1\|424657_425386_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_017768.1\|WP_014677815.1\|446186_446921_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500

Protein	Function_ID	Function_description	E-value
NC_017768.1\|WP_014677801.1\|420268_420514_+\|hypothetical-protein	gnl\|CDD\|350305	cd18738, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.42528e-05
NC_017768.1\|WP_002300589.1\|442919_443897_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.08046e-174
NC_017768.1\|WP_014677813.1\|441365_442157_+\|enoyl-CoA-hydratase	gnl\|CDD\|180910	PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.	4.33338e-179
NC_017768.1\|WP_002264078.1\|439102_440461_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NC_017768.1\|WP_002262534.1\|444283_445249_+\|enoyl-[acyl-carrier-protein]-reductase-FabK	gnl\|CDD\|132195	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.	5.13667e-168
NC_017768.1\|WP_014677805.1\|425385_427281_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	1.48627e-131
NC_017768.1\|WP_002262537.1\|446969_448202_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|235987	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II.	0
NC_017768.1\|WP_044560274.1\|422016_424413_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.64809e-100
NC_017768.1\|WP_002262531.1\|442485_442920_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.10415e-16
NC_017768.1\|WP_014677807.1\|428137_428809_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	2.92223e-28
NC_017768.1\|WP_014677802.1\|420797_421772_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.55638e-14
NC_017768.1\|WP_014677808.1\|428805_429831_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.60875e-180
NC_017768.1\|WP_014677806.1\|427284_428136_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.84723e-134
NC_017768.1\|WP_014677814.1\|445251_446172_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.00498e-125
NC_017768.1\|WP_002280569.1\|429841_430135_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.40026e-31
NC_017768.1\|WP_002262533.1\|443956_444181_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	8.86201e-18
NC_017768.1\|WP_002262529.1\|440559_441204_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	3.20316e-45
NC_017768.1\|WP_014677804.1\|424657_425386_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.46144e-101
NC_017768.1\|WP_014677815.1\|446186_446921_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	7.07601e-127

>NC_017768.1|WP_002280569.1|429841_430135_+|CRISPR-associated-endonuclease-Cas2
MMVLVTYDVNTETVAGRKRLRHVAKLCVDYGQRVQHSVFECSVTPAEFVEIKNELSTIIDKESDSIRFYLLGKNWQNRVETMGRDDSYDPDVGVLLL
>NC_017768.1|WP_014677808.1|428805_429831_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKMLNTLYLTQDNFYLTRERDNIVIKQEGAVVHRFPYRIIDGIVCFSYLGASPSLIELCAKNQINLSFHTPQGRFCGRFVGPANGNVLLRRQQYSLADNDLSLAYAKRFILAKISNARKYLLRFRRDHRAKINQQLFEEVNTELTFALEMVATARDKDTLLGIEGQAANDYFRAFNDLVLTDKQTFQFKGRTRRPPQDCVNALLSFGYSLLTYECQSALEAVGLDSYVGFYHTDRPGRASLALDLVEEFRSYIVDRFVFSLINKGQLSKKHFDIKENGSVILTEKGRAIFIEAWQKRKHTEVEHPFTKEKVKLMLLPYVQAQLLSKAIRGELESYPPFLI
>NC_017768.1|WP_014677807.1|428137_428809_+|CRISPR-associated-protein-Cas4
MAYAEDDYLMLSGIQHFQFCKRQWGLIHIEQQWAENEATTHGQILHQKADNPYIREKRKDIITSRAMHVSSKTLGLYGILDVVEFHKDESGISLKGKRGKWLPCIVEYKRGKPKRDTRDIVQLVAQTICLEETFACHIETGCLYYHGVNQKKVIEITEVLRQEVFDLAEQMHYYYDNKIIDKAEYFKNCSLCSLVDICKPRLSKKSRNVANYIKQSLVSEESL
>NC_017768.1|WP_014677806.1|427284_428136_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLEHKIDFMVTVEVREANANGDPLSGNMPRTNAANQGLISDVAIKRKIRNRMQDLGHTIFVQANDRIEDGLNSLEKRFKTQFTGKESDEEINEKANQLWMDVRSFGQVFTYLKDRSFAIRGPVSVSMAKSLDPIIISSLQITRSTNGVEPKKAGGRSSDTMGTKHFIDYGVYVIKGAINPNFAEKTGFSKEDAEVIKEVLVSLFENDASSARPEGSMRVREVFWFTHSNKLGNVSSARVFDLLEFDKEKQDKDSYEDYAIHLNQEKLAEYEAKGLQVEIIEGL
>NC_017768.1|WP_014677805.1|425385_427281_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKAYEKAEEIGLVDQQKGDNPVLLPLYHTSLKSNGKNIIIVKLDQDGSFYKAEFMADNQTIIFPVTGDSVARSGSNPAPHPLVDKFSYYVSEANQSQYDNFHEQLANWIAYCEEGEVKDFLIKIQQFILQPDFLNDILHSLFGEDYRREGWKITYLDSTGKDKTLDLSAYFLEFSIVQFHGFKDESVTSYKALHQSFISFMTANQDNLRTCNISGRMEQITNKHRGLMGNAKIISVSNKGEAYKGRFREREDVFSVGYETSEKIHLMIKYLMENNNSSTWLGSSQYLINWFSDDLVNESQLDIVKPIFNDLFEDDEEESLVPIKPNEESRQIGSSFIKGQKLFGNDATYYIAILNKTSNGRIALKYFRQLQVSQLLKNLESWQENYSWEAKTKAGDYKIKIPIFNEIINVAYGVDRERYLELDNDAFRSDQYQQLVTALIDGNPMPSTIVKKLEANIKQRQKYPKHWSQVQQVSLAILHKQYGREFKPMLDHENTNRSYLFGRLLAIFELMESKKYEIENPNKDKKESNRITNAERYWNAYTSQPAKLMMNLTNKIKPYEEAVRLNAYGIFHKLDKERAEIVQLLSPLMAKKDINDPLDYQFIFGYYAEKQFFYTKQEKNESEE
>NC_017768.1|WP_014677804.1|424657_425386_+|type-I-C-CRISPR-associated-protein-Cas5
MYRSRNFYAKVRGQRALFTNPATKGGSERSSYSTPTRQALQGIIDAVYHKPTFTNVVTEVKVMNQIQTELHGVRALLHDYSADLSYVSYLSDVEYLVKFHFIWNKNREDLMQDRLPKKHEAIMERSIRKGGRRNVFLGTSECFGLVDEISQEEYENTPSYYDGVTIDLGIMFHSFAYPKDETTPLKSFFTKTVMENGLIKFKPQSDCEIVNTLSSYTFKTPGQVKSVDDELKEYDAMEKGEE
>NC_017768.1|WP_044560274.1|422016_424413_+|CRISPR-associated-helicase/endonuclease-Cas3
MKMKLAHKNNTGEEQSLEDHSFNVANKAREDAEFIGQGDLLFLLGMFHDLGKADEKFQNKLTKNPTMHVDHAYAGAKYLYEKIKIRLSAKGVDKATRLQFNEIVAYVIAAHHGMFDIVDLESEQHAYNKLRNRIARPKSDYHFDSDVTNFANFLETKLEHYGYQDLGMLIDKSFENYQQALSKLDCQDSSEEVYYQSCFVRLYLSLLKNADILDTINAYGLLINPLKQEEKIRLNRSYLEAIEKKYGEFGSPITRLNEIRSQIAERVKSRGESDSTGIYRLDLPTGAGKTNLSMRYAFHQLVDQDRSRFFYITPFLSVLEQNAAEIRKVTGDAGVLEHHSNVIRQTDDNDEKEMLMSEYLIDSWDSQVILTSMVQFFQTLFKTRSANIRRFSSLIDSVLILDEVQSLPIEVTTLFNLSMNFLNKVMNTTIILCTATQPAYDSTTINHRISYGGKDGESADIIDLTHEEKEVFSRTELRKFDENNQHSNLSDLVDFVLENDESILAIFNTKKTVDKFYTLLKELTDRPIYQLSTNMCAQHRLDIISEIKQGLEDGLPLICISTQLIEAGVDVDFNHVIRSYAGIDSIVQASGRCNREGKRDKGQVTLINLTSEEENISPLKEIKAKKDATEYILHKISSPIDTSLLNRDFFEYYYANNQGSMDYPLEHDGESVYDYLSVNFYQKKVGFKGKLKQAFKTAGLKMNLINNETIGILVPYKDAVEKLLVLEELCESDYPSEEDYQTIKILLKALQPYTVNVRERDLLLEATKSYLNGQIQILPKCYYNDNKGITIESGSLLL
>NC_017768.1|WP_014677802.1|420797_421772_+|WYL-domain-containing-protein
MAESKTKRLLYFMSELEKGNQINKEEYIAKFNISDRTMKEDVSELKTNLKELRPNMQIKFSRKHTCYFASYEQGYGNLKYNQAVILSKILLESRALRKEEVAEIINIFVERAVDDKERTRIKKLTQFELNSYQELKFYQKSNKSILPTISAIFDAIVDQRPLAFSYTKPSSKVEEYIVLPISVIFDNHYFYCISYKLDNCFQSRYELQELRYFRVDRFKTIHKSISNSAFALTEEEQERLITDEQVRYQTFSMLSDQKWVRIQFRYTGQFRDVLEADIPKLKMINELEEGIIYEIETLSLLGFQKYIQRFDGDFVFLNIKSIKK
>NC_017768.1|WP_014677801.1|420268_420514_+|hypothetical-protein
MGKIARLELEKLVKIFQVLDVTKENCLQALSMKMPDFEGAVVAAVALSNGINIVVTRNVTDFQDSELIIYLPEEFLERLKR
>NC_017768.1|WP_002301147.1|419915_420131_+|hypothetical-protein
MKFEPDQEFTIKAVDLDGHKQLFIEPLVSQNDQLSLVESLSGVLSDSETVDVKDYRSERKEERLKKYESLT
>NC_017768.1|WP_002264078.1|439102_440461_-|aspartate-kinase
MKVVKFGGSSLASATQLEKVLNIIKSDEERRFVVVSAPGKRDAQDTKVTDALIRYYRSYTSDKDVTADQSWIINRYRAIIDELGLGQNILEKITKAIVDLANLPIEDNDFLYDTFLAAGEDNNAKLIAEYFRKNGLSARYIHPKKAGIIVTSEPGNARIIPSSYDKLEELRDSDEVLVIPGFFGVTIDNQICTFSRGGSDITGSIVAAGVKADLYENFTDVDGIFAAHPGVVHKPHSISELTYREMRELAYAGFSVLHDEALIPAYRGKIPLVIKNTNNPEHPGTKIVLAHTGATIPVVGIAGDDDFVSINLSKYLMNREIGFGRKVLQVLEELNIRWEHIPTGIDDMSIILRGRELTPIKEQEIISQLTRKLEVDEVEIERNLSIIMIVGENMKNHIGVTAKAAEAFSKKHINLEMISQGSSEVSVMFVIKTEQEKQAVRALYQTFFMKDE
>NC_017768.1|WP_002262529.1|440559_441204_+|HAD-family-phosphatase
MATKAVIFDMDGVLFDTEGFYYRRREIFLNDKGISIKHIPPAFFIGGNMKQVWQKILEDDYANWDVEQLQKDYTSYKNKHPLPYQNLIFPDVKVILEKLKQHQFKIALASSSTKSDILLALNKTGIYDYFDLVLSGEEFPESKPHPAIYNEAAYQLGFPKSELLIIEDSEKGIAAGVSAGIEVWAIKDRTFGLNQRAASRLFSNLTEVVDFLLK
>NC_017768.1|WP_014677813.1|441365_442157_+|enoyl-CoA-hydratase
MDFKEILYNVDNGVATLTLNRPEVSNGFNIPICEEILKAIDIAKKDDTVQILLINANGKVFSVGGDLVEMQRAVDADDVQSLVRIAELVNKISFALKRLPKPVVMSTDGAVAGAAANIAVAADFCIASDKTRFIQAFVNVGLAPDAGGLFLLTRAIGITRATQLAMTGEALNAEKALEYGIVYKVCEPEKLEKITDRVITRLKRGSVNSYKAIKEMVWQSSFAGWQEYEDLELELQKSLAFTDDFKEGVRAYTEKRRPKFTGQ
>NC_017768.1|WP_002262531.1|442485_442920_+|MarR-family-transcriptional-regulator
MDYKQINTYLVDIFNKIMIIEEMSLKTSQFNDVSLKEMHTVDIIGKNANVTPSDIAHELLVTLGTVTTSLNKLEKKGYIERTRSQLDRRVVYLTLTQKGRLLYRLHNRFHKNVVNRITEAMDATELGALEKGLRNLHQFLEGLV
>NC_017768.1|WP_002300589.1|442919_443897_+|ketoacyl-ACP-synthase-III
MTFAKISQAAYYVPSQVVTNDDLSKIMDTSDEWITSRTGIRERRISQSEDTSDLASQVAKELLKKASLKAKEIDFIIVATITPDAMMPSTAACVQAKIGAVNAFAFDLTAACSGFIFALSAAEKMIKSGQYQKGLVIGAEVLSKIIDWSDRTTAVLFGDGAGGVLLEADSSEHFLFESIHSDGSRGESLTSGGHAVSSPFSQVDKKDDCFLKMDGRAIFDFAIRDVSKSISTLIRKSDMPVEAIDYFLLHQANIRILDKMAKKIGADREKFPANMMKYGNTSAASIPILLAECVENGTIELNGSHTVLLSGFGGGLTWGSLIVKI
>NC_017768.1|WP_002262533.1|443956_444181_+|acyl-carrier-protein
MAVFEKVQEIIVEELGKDTDEVKLETTFDELDADSLDVFQVISEIEDEFDIQIESEDGLNTVGDLVAFVEEKTK
>NC_017768.1|WP_002262534.1|444283_445249_+|enoyl-[acyl-carrier-protein]-reductase-FabK
MKTRITELLDIEYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKAVTNKPFGVNIMLLSPFADDIVDLVIEEGVKVVTTGAGNPGKYIERFHEAGITVIPVVPSVALARRMEKLGADAVIAEGMEAGGHIGKLTTMTLVRQVVDAVNIPVIGAGGVADGRGAAAVFMLGAEAIQVGTRFAVAKESNAHANFKKKILKAKDIDTVISASIVGHPVRAIKNKLSSAYATAEKEFLRGEKSQEDIEVLGAGALRNAVVDGDVDNGSVMAGQIAGFVTKEETCEEILKDLYYGAAKVIKAEAARWADVEK
>NC_017768.1|WP_014677814.1|445251_446172_+|ACP-S-malonyltransferase
MTKTAFLFAGQGAQKLGMASDLYEIYPVVKETFKTAHSILGYDVRALIDNDEEKLNQTRYAQPAILTTSVAIYRLLKEKGYQPDIVAGLSLGEYSALVAAGAISFEDALALVAKRGEFMETAAPAGVGKMVAVMNTDPRLIEEVCQKASSKGIVSPANYNTPTQIVIGGEVAAVDYAVELLKEAGSKRLISLKVSGPFHTALLESASQKLGQALENIKFSDFTLPLVGNTEAEIMEEHEIKSLLARQVKEPVRFYESIAVMQKFGVNNYVEIGPGKVLSGFVKKIDKSAKISAVEDLASLQAFLDN
>NC_017768.1|WP_014677815.1|446186_446921_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MEIKNKNVFITGSTRGIGLAIAHKFAQAGANIVLNGRSEISQDLVAKFKDYGVKVATISGDVSHFEDAKRMVDEATEALGSVDILVNNAGITNDKLMLKMTEEDFERVLKINLTGSFNMTKAVLKPMTKARQGAIINMSSVVGLAGNVGQANYAASKAGLIGFTKAVAREVAARNVRVNAIAPGFIESEMTERIPDKMKDAMLNQIPMKTFGKTENVAEVAIFLAQQDYLTGQVIAIDGGMTMQ
>NC_017768.1|WP_002262537.1|446969_448202_+|beta-ketoacyl-ACP-synthase-II
MTLKRVVVTGYGVTSPIGHTPEDFWNSLHDGKIGIKPITKFDASEIPVFNAGEIQDFPFDKYFVKKDKNRMDTYSLYAIYAAMEAIENAALDMAQEIRDRVGVIVSSGIGGLQELEDQIIRMHERGMKRIKPMFIPKALSNMGAGNIALKIGAQGVCKSITTACASANDAIGEAFREIKYGFHDVILAGGSEASITKIGIGGFNALTALSTTEDPARSAIPFDKDRNGFVMGEGAAVLILESLEHAQKRGARILAEVVGYGSNCDAYHMTTPTPDGSGAAKAIKLAINEAGISPEEVNYVNAHGTSTQANEKGESKAIVAVLGKDVPVSSTKSFTGHLLGAAGGVEAIATIEAIRNHFVPMTAGTKELSEDIEANVVYGQGQEADIKYAISNTFGFGGHNAVLAFKRWED

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Crispr_ID: NC_017768_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017768_2

758428-759057

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CRT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	PILER-CR

9 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_017768_2

>merge|NC_017768|2|758428-759057|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGAGAAGCATGAATGGTTAGTGGATAAGCTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTGAAGTGCAAGCTTACGTGACTGACTCGCGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAATGTAAAAGGCTTATATGAATAATAAATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAGACGAGATGTACAATCGTGTTTCTCTAAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAATTCCAAGTCAGCTTTCAACGCTTTTAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTGTCCCATCAACAAAAGTTCCTTTTTCAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGAGAAGTTAAAAAAATATGACTGGCAAGCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTACCGCTTATGCAGATGATGCCGAAGGAAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAAC

>NC_017768|2|2|758428-758991|CRISPRCasFinder
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAGAAGCATGAATGGTTAGTGGATAAGCTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGAAGTGCAAGCTTACGTGACTGACTCGCG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAATGTAAAAGGCTTATATGAATAATAAAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AGACGAGATGTACAATCGTGTTTCTCTAAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAATTCCAAGTCAGCTTTCAACGCTTTTAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTGTCCCATCAACAAAAGTTCCTTTTTCAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAGAAGTTAAAAAAATATGACTGGCAAGCT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TACCGCTTATGCAGATGATGCCGAAGGAAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

>NC_017768|2|2|758428-759057|CRT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAGAAGCATGAATGGTTAGTGGATAAGCTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGAAGTGCAAGCTTACGTGACTGACTCGCG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAATGTAAAAGGCTTATATGAATAATAAAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AGACGAGATGTACAATCGTGTTTCTCTAAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAATTCCAAGTCAGCTTTCAACGCTTTTAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTGTCCCATCAACAAAAGTTCCTTTTTCAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAGAAGTTAAAAAAATATGACTGGCAAGCT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TACCGCTTATGCAGATGATGCCGAAGGAAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AATAGAATCAAATTCTCCTAAGTCAGTTAA
GTTTTAGAGCCATGTTAGTTACTGATTTACTAAAAC

>NC_017768|2|2|758494-758991|PILER-CR
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGAAGTGCAAGCTTACGTGACTGACTCGCG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAATGTAAAAGGCTTATATGAATAATAAAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AGACGAGATGTACAATCGTGTTTCTCTAAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAATTCCAAGTCAGCTTTCAACGCTTTTAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTGTCCCATCAACAAAAGTTCCTTTTTCAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAGAAGTTAAAAAAATATGACTGGCAAGCT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TACCGCTTATGCAGATGATGCCGAAGGAAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017768.1\|WP_002264915.1\|757896_758274_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_017768.1\|WP_002271978.1\|750461_751337_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_017768.1\|WP_002276322.1\|759139_760033_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NC_017768.1\|WP_044560428.1\|760347_760632_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_017768.1\|WP_014677914.1\|765169_765997_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017768.1\|WP_002266524.1\|766634_767249_+\|hypothetical-protein	unknown	unknown	unknown
NC_017768.1\|WP_014677909.1\|751694_755732_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_017768.1\|WP_002269623.1\|767313_767970_-\|Pr6Pr-family-membrane-protein	unknown	unknown	unknown
NC_017768.1\|WP_014677915.1\|768288_769929_+\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NC_017768.1\|WP_014677907.1\|746676_747852_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341026
NC_017768.1\|WP_044560427.1\|756594_756939_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_017768.1\|WP_014677916.1\|770121_771204_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NC_017768.1\|WP_014677913.1\|760794_762546_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|369832
NC_017768.1\|WP_002274019.1\|747861_749352_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180854
NC_017768.1\|WP_002263546.1\|756928_757591_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NC_017768.1\|WP_014677908.1\|749475_750354_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NC_017768.1\|WP_002265423.1\|757687_757879_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_017768.1\|WP_002269621.1\|771200_772181_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_017768.1\|WP_002262717.1\|763305_765141_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_017768.1\|WP_014677910.1\|755731_756598_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
NC_017768.1\|WP_002264915.1\|757896_758274_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.44995e-14
NC_017768.1\|WP_002271978.1\|750461_751337_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.89947e-38
NC_017768.1\|WP_002276322.1\|759139_760033_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.55409e-23
NC_017768.1\|WP_044560428.1\|760347_760632_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.47082e-07
NC_017768.1\|WP_014677914.1\|765169_765997_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.39726e-06
NC_017768.1\|WP_002269621.1\|771200_772181_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.8374e-46
NC_017768.1\|WP_014677909.1\|751694_755732_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_017768.1\|WP_014677915.1\|768288_769929_+\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	7.18267e-12
NC_017768.1\|WP_014677907.1\|746676_747852_-\|MFS-transporter	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.69057e-50
NC_017768.1\|WP_044560427.1\|756594_756939_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.03336e-49
NC_017768.1\|WP_014677916.1\|770121_771204_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	7.95981e-94
NC_017768.1\|WP_014677913.1\|760794_762546_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|369832	pfam08363, GbpC, Glucan-binding protein C. This domain is found in the Streptococcus Glucan-binding protein C (GbpC) and also in surface protein antigen (Spa)-family proteins which show sequence similarity to GbpC.	1.82745e-109
NC_017768.1\|WP_002274019.1\|747861_749352_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|180854	PRK07121, PRK07121, FAD-binding protein.	1.02417e-41
NC_017768.1\|WP_002263546.1\|756928_757591_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.55029e-116
NC_017768.1\|WP_014677908.1\|749475_750354_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	8.11546e-21
NC_017768.1\|WP_002265423.1\|757687_757879_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.38968e-15
NC_017768.1\|WP_002262717.1\|763305_765141_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_017768.1\|WP_014677910.1\|755731_756598_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.73807e-129

>NC_017768.1|WP_002264915.1|757896_758274_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLKTYPAIFHKEEEGYWVEFPEFGGGTQGEDLEEAMKNARQMLESVLASYLDEGMKLPNPSEIRKLSVEDGFATMIQADPNPYLKNNKAIRKNVTVPEWLVQLADRDQVNYSEVLTKALEKKLQL
>NC_017768.1|WP_002265423.1|757687_757879_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MPLTGKELARLAINNGWEEVRVRGSHHHFKKDGVPYIVTIPIHGNKVLKIGLEKKLLRDLNLL
>NC_017768.1|WP_002263546.1|756928_757591_+|type-II-A-CRISPR-associated-protein-Csn2
MKLNFPILDEPITLEKSTILVLEDVQVFAQMVRNLYQYDEDSELKFFNRKFKSLKPSELMLVTDILGYDVNAPSLLKLVHADLENQFNEKPEVKSMVEKLANTITELIAYECLENELDLEYDEITILELIKALGVKIETQSDTIFEKMFEVLQVYKYLNKKKLLVFINTLSYFKREEIAQILEYIHLSDMVVLFLEPRKIDGFAQYILDEDYFLITESNN
>NC_017768.1|WP_044560427.1|756594_756939_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTDTAEERKVYRKFRKFLLSEGFIMHQFSVYSKLLLNNSANTAMIARLKENNPKKGNITLLTVTEKQFARMIYLNGERDASIANSDSRLVFLGEAFPDET
>NC_017768.1|WP_014677910.1|755731_756598_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNTHSKLSYKNNHLIFKDTYQTEMIHLSEIDILLLETTDIVLSTMLVKRLVDENILLIFCDDKRLPTAMLMPYYARHDSSLQLNNQISWTEEVKCDVWTTIIAQKILNQSCYLGECSYFEKSQSIMDLYHDLETFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPIVDRIVYENRNNSFIKIKRELFSMFSDTYLYNNKEMYLTNIVSDYTKKVIKALNNDGKGVPEFRI
>NC_017768.1|WP_014677909.1|751694_755732_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKPYSIGLDIGTNSVGWAVVTDDYKVPDKKMKVLGNTDKSHIKKNLLGALLFDSGNTAEDRRLKRTARRRYTRRRNRILYLQEIFSEEMGKVDDSFFHRLEDSFLVTEDKRGERHPIFGNLEEEVKYHENFPTIYHLRQYLADNPEKTDLRLVYLALAHIIKFRGHFLIEGKFDTRNNDVQRLFQEFLAVYDNTFENSSLQEQNVQVEEILTDKISKSAKKDRVLKLFPNEKSNGRFAEFLKLIVGNQADFKKHFELEEKAPLQFSKDIYEEELEVLLAQIGDNYAELFLSAKKLYDSILLSGILTVTDVSTKAPLSASMIQRYNEHQMDLAQLKQFIRQKLSDKYNEVFSDVSKDGYAGYIDGKTNQEAFYKYLKGLLNKIEGSGYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMRAIIRRQAEFYPFLADNQDRIEKILTFRIPYYVGPLARGKSDFAWLSRKSADKITPWNFDEIVDKESSVEAFINRMTNYDLYLPNQKVLPKHSLLYEKFTVYNELTKVKYKTEQGKTAFFDANMKQEIFDGVFKVYRKVTKDKLMDFLEKEFDEFRIVDLTGLDKENKAFNASYGTYHDLRKILDKDFLDNSKNEKILEDIVLTLTLFEDREMIRKRLKNYSDLLTKEQLKKLERRHYTGWGRLSAELIHGIRNKESRKTILDYLIDDGNSNRNFMQLINDDALSFKEEIAKAQVIGETDNLNQVVSDIAGSPAIKKGILQSLKIVDELVKIMGHQPENIVVEMARENQFTNQGRRNSQQRLKGLTDSIKEFGSQILKEHPVENSQLQNDRLFLYYLQNGRDMYTGEELDIDYLSQYDIDHIIPQAFIKDNSIDNRVLTSSKENRGKSDDVPSKDVVRKMKSYWSKLLSAKLITQRKFDNLTKAERGGLTDDDKAGFIKRQLVETRQITKHVARILDERFYTETDENNKKIRQVKIVTLKSNLVSNFRKEFELYKVREINDYHHAHDAYLNAVIGKALLGVYPQLEPEFVYGDYPHFHGHKENKATAKKFFYSNIMNFFKKDDVRTDKNGEIIWKKDEHISNIKKVLSYPQVNIVKKVEEQTGGFSKESILPKGNSDKLIPRKTKKFYWDTKKYGGFDSPIVAYSILVIADIEKGKSKKLKTVKALVGVTIMEKMTFERDPVAFLERKGYRNVQEENIIKLPKYSLFKLENGRKRLLASARELQKGNEIVLPNHLGTLLYHAKNIHKVDEPKHLDYVDKHKDEFKELLDVVSNFSKKYTLAEGNLEKIKELYAQNNGEDLKELASSFINLLTFTAIGAPATFKFFDKNIDRKRYTSTTEILNATLIHQSITGLYETRIDLSKLGGD
>NC_017768.1|WP_002271978.1|750461_751337_+|NADPH-dependent-oxidoreductase
MKLVAIVGSNASFSYNRLLLQFIKERFGQAFALEILEIKELPLFNQDSSAADCPLIQKLNEDILNADGIIIATAEHNQTITASLKSMLEWLSYQLHPFKNKPVMIVGASYYNQGTSHAQEHLRQILNAPGLDAWVMPGNEFFLGNASEVFDENNQIKDDDTVIYLAQCLQRFIRYVTVVQELKGDSIQLSDAISGASESVQEDSAASAMLEKQLSLQKKETNTPFERALDKTYGPALKDTLEDPFDKDLDAQYKAIKKQPIPFEKALDNIFGKDLGIETTDPLDNLLRSEQ
>NC_017768.1|WP_014677908.1|749475_750354_+|helix-turn-helix-transcriptional-regulator
MVRFISNTLSQTLNEPFQQSHKSCKHLYILEILSQVVIVSDQKQVPLQPYDIILAQSFNHLQIDSLDRNPILLRLYSLDFDLPSPLNQYTVGDNSLIHDLMNDHTSEDAYILFTNLSDLICHAYLDALEKLENLRDNNDEQVYIDFQRQKLAGLLFTELLRQHDAKVSKFASRFPSVNVKYASKDSQSGAIMKYVSDNVHHISLKEAAAHFSYQANYFSRLCHELFGISFNQLKTTIRLEIAKEQLRLTTKSVEEISQELGYKAVSNFHRNFKSQTGMTPNDYRQDKQWKDT
>NC_017768.1|WP_002274019.1|747861_749352_-|FAD-dependent-oxidoreductase
MEKEYKVDVVVAGAGGAGLAAAHAAAQNGLKVLVLEKLKQIGGNTRISSGFFAINTKEQNAAGLKLSTQEAIRQLQEHNHFLSNGALLKNIIEHAKETLEEIEKLGMEIKLNPTKNSTQFAHFGNDYQGGSYHMYMNKDSSYLQIQKSLEAMGVTFIFGVRMTELLQDSNGHVRGLKALNDAGESMTVHAKASIITTGGFGGDKRRVAKVMRTLNLRTLGVPNMGEGLSAMEAAGGVNIDGSALIHAAQMAQSTVTQETKGKQLAGFNDSPLTQLLLSPLLWVDPNGSRFTNEDVVYDTVQWSNAAYGVGSKYYYVMDTATLESYTKQPLLTISKSGPGASQAKGDFVSLAEQAVQQGIAFKGDSLEELAQNSGMDPIAFKATVAEYNKAIASQNDEIFSKSASSLKYDVKKGPFYAFIAQVVYLGTVGGVRVDKDLRVLDAYMKAIPGLYTGGANAGGYYAPRNYPAYEGLASGFSWTSGRLAGLAAANDIKKYN
>NC_017768.1|WP_014677907.1|746676_747852_-|MFS-transporter
MNQKNLSPSSWFFKISVLSLSILAMTAPSISIANNLLQKTFTQQSTAEIEMISTLPNFGVLLLILFADTIANKFGIKRTITAGLLMYLLGGVLPAFIPNYYAIVFLRFLMGCGIGLFNPFSVSLMYRFYKDQELSDMLGFQNTGQNLGNAGFGFLLGALVLAGWKVTFMGYFIALIPLILFGAFVVIPDDQPTIKKERPKLADSINGHILLLALLFLIIFGMFMMMTIKMALFGAETGLISASAASSILAVLGLSSMFSAIAFGKLSKRVGNFMLPISLTGIAMGFFIVASASNAAMVVLGVIIAGIFFGWVFPQAFLRAAQVGPKEGGTLTTSVILMGINLGAFLSPSVVNFVANLLGNKTAASVLAMCGWGFALLAILEYLYTFFNQRT
>NC_017768.1|WP_002276322.1|759139_760033_-|LexA-family-transcriptional-regulator
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFASKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQKETVTIAADDKTSENTITSKSHHAEYQKIVDSYIAKELKDQTIIHWDNVIKAKDLYQTLGRQHENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKTKAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT
>NC_017768.1|WP_044560428.1|760347_760632_+|helix-turn-helix-transcriptional-regulator
MQFVWESNGKLKGDVEVEKLTLRALRVNYSLSPKEVADCLGISQHTLLSYEEDSSEIPIQLANDLANYYDISLDSIFFGKNSDLKQKFKNKNNR
>NC_017768.1|WP_014677913.1|760794_762546_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKSKTAKITLLSSLALAAFGATNVFADEASTQLNSDTVAAPTADTQASEPAATEKEQSPVVTVVESHTQGNTTTTTSQVTSKELEDAKANANQEGLEVTETETQKQPSVEAADADNKAQAQTINTAVADYQKAKAEFPQKQEQYNKDFEKYQSDVKEYEAQKAAYEQYKKEVAQGLASGRVEKAQGLVFINEPEAKLSIEGVNQYLTKEARQKHATEDILQQYNTDNYTASDFTQANPYDPKEDTWFKMKVGDQISVTYDNIVNSKYNDKKISKVKINYTLNSSTNNEGSALVNLFHDPTKTIFIGAQTSNTGRNDKISVTMQIIFYDENGNEIDLSGNNAIMSLSSLNHWTTKYGDHVEKVNLGDNEFVKIPGSSVDLHGNEIYSAKDNQYKANGATFNGDGADGWDAVNADGTPRAATAYYGAGAMTYKGEPFTFTVGGNDQNLPTTIWFATNSAVAVPKDPGAKPTPPEKPELKKPTVTWHKNLVVETKTEEVPPVTPPTTPDEPTPEKPKTPEDPQSPVVAKSVSFRTARKGEMRVRERDYQPTLPHTGAAKQNGLATLGAISTAFAAATLIAARKKEN
>NC_017768.1|WP_002262717.1|763305_765141_+|elongation-factor-4
MTIEQLKNRQEKIRNFSIIAHIDHGKSTLADRILEQTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYKAKNGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRTEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPKGDVEAPLKALIFDSVYDAYRGVILQIRVMDGMVKPGDKIELMSNGKTFDVTEVGIFTPKAVNRDFLATGDVGYLAASIKTVADTRVGDTVTLADCPAEAPLHGYKQLNPMVFAGIYPIDSSKYNDMREALEKLQLNDASLHFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVYTTDGERLEVSNPSEFPDPTKVDSIEEPYVKAQIMVPQEYVGAVMELSQRKRGDFVTMDYIDNNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDISEYRKSKLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKSIGSVEVPQEAFLSVLSMDDDDKKK
>NC_017768.1|WP_014677914.1|765169_765997_+|alpha/beta-hydrolase
MAALNKEIVNTLLGPIYTCHREGNPCFVFLSGAGFFSTADNFANIIDKLPDSIGILTIDAPNSGYSPVSNQANVGLRDWVNAILMIFEHFKFQSYLLCVHSIGGFTALQIMNQSSKACLGFIGLEPTTAMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRRLNDVQSLPDFKIRLALGEEDFKTVISEKVPSIVFSEPFREKEYLESEYLNKHIQTKLILCGQHHYLHWSETNSILEKAEQLLSNHEKL
>NC_017768.1|WP_002266524.1|766634_767249_+|hypothetical-protein
MPRRRASRRKSKKKAVFSILLTGITLIIIGLAVYFISAYFTNTKKTANKEKTQTHIVNPKKDPEEKKEADSSSKVASASKFDLTTIATGDYSSAAGTWQNELGDQLKFNASGLESATIQNATDFTISSGQATNDGLYQATLTSADSTVVYNLLFVKGGTAIPENYFTTGYSDTSDTSRDRLYISSQTTFGSDDFSKGIFYKSEN
>NC_017768.1|WP_002269623.1|767313_767970_-|Pr6Pr-family-membrane-protein
MSKTQAFRSLIALLGLIGVSIQIKQSGWGMLLYYTTLSNVIVFSFLTYLVIKEKRNGSINSNPKLLRLKGGVTMTIMITFMVYHFLLAPKVRSYDYYTIRNFLVHYIVPLSTIFDTLICDRRKIYRWFDPIIWTCLPLLYFGFALINGLLLKWPIPGTADSPFPYFFINMNKYGAQQVLINALVIALLYLLFGYILLGIKQMIGQKRQVTDNSSLNMS
>NC_017768.1|WP_014677915.1|768288_769929_+|phosphoenolpyruvate-carboxykinase-(ATP)
MVTRQHFSEDSMRKNNSYFSALKATIETAFYENHVVPLKELAEAYRLAAKSPNTIVLDTPVAHAEDLGLPKDAKILLENSGGIVGRTAKARRIFGQDSKEDAKILQIIREAIFQARHRTFYRADAVVGLDEAFMLRAHLMVPQDDINNLYSWLNNFQVLNDTYHERLKKSKRYEETDIYIFSDPEWSHPDYPDGLVYFDTNHNCAAILGLHYFGELKKATLTLAWGTANRNKYVACHGGLKIFEKEGQKPYVASFFGLSGSGKSTLTHAKHNGKYRIDVLHDDAFVISEEDGSTIALEPAYFDKTNDYPAGHREQKYFVAVQNCGAALDKEGHLRLVTEDIRNGNGRTIKSRFSTPNRVDRINHPIQSIFWIMKDDSLPPLIRVTDPIMASIMGCTLVTTRSTAENTTDSLDALIIEPYANPFRVYPLVEDYIKFQHLFESGVNCYIINTGSYLGQDIPKETTLDVIEQVVDGTAKFESFGSVKGFEYLSSSHYKIPNFDKAYVKIIRQRMKIRLQYLEAFNRKNPKLSLPDEAISHLKDVLANLG
>NC_017768.1|WP_014677916.1|770121_771204_-|DEAD/DEAH-box-helicase
MKTQFPSVWQDKLSQKHFSAFTTIQEAAFDPIKNGKSLLGISPTGSGKTLAYLWPSLLTLTPKKAQQLLILAPNTELAGQIFEVTKEWAQPLNLTAQLFLSGSSQKRQIERLKKGPEIIIGTPGRVFDLVKLKKIKMMNVNTIVLDEFDDLLGKSQIHFVENIVKRVPRDHQMIYMSATNSIDRTFLADDTHEIDLSKQTVDTISHYYITVAKRERGELLRKFSNIPNFRGLVFFNRLSDLGANEERLQFSGASAVSLASDVNIKFRKVILEKFKNYEISLLLATDLVARGIDIELLETVINFDLPRDKDAYNHRAGRTGRMGKNGIVVTFISHPEELKKLKKFAHVSEVYLKNQILHKK
>NC_017768.1|WP_002269621.1|771200_772181_-|Gfo/Idh/MocA-family-oxidoreductase
MLKLGIIGTGSISHQFIEAAQLSQHYQLTAVYSRKLETAEAFSARYQNIACYDMLDDFFNDAFDVLYIASPNALHFEHAKLALEAGKHIIVEKPAFSTPEELSNIIHSAEEKQLFFFEAARNYHEESLLLIKEFLSHKTVIGADFSYAKYSSKMKDLLAGKLPNVFSDKFSGGALVDLGIYPIYAAIKLFGKPKSVNYTATQLENTIDLNGNGNLIYPDFHVSIRAGKNYNTLEYAEIYTSEGTLRLNHIQGISSAIFQKHDGSREKLALPDIEHLMLEEAKHFAEMMNNKNEVIYQTWLEDAKTASQILYQMRQSAGIVFEADKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017768_1	1.4\|430513\|35\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430513-430547	35	AM749121	Streptococcus phage M102 complete genome	19252-19286	1	0.971
NC_017768_1	1.4\|430513\|35\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430513-430547	35	NC_012884	Streptococcus phage M102, complete genome	19252-19286	1	0.971
NC_017768_1	1.4\|430513\|35\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430513-430547	35	DQ386162	Streptococcus phage M102AD, complete genome	19374-19408	1	0.971
NC_017768_1	1.4\|430513\|35\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430513-430547	35	MT430910	Streptococcus phage smHBZ8, complete genome	12755-12789	1	0.971
NC_017768_1	1.1\|430315\|34\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430315-430348	34	MT430910	Streptococcus phage smHBZ8, complete genome	16274-16307	2	0.941
NC_017768_2	2.2\|758530\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758530-758559	30	MT430910	Streptococcus phage smHBZ8, complete genome	14156-14185	2	0.933
NC_017768_2	2.2\|758530\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758530-758559	30	AM749121	Streptococcus phage M102 complete genome	17907-17936	3	0.9
NC_017768_2	2.2\|758530\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758530-758559	30	NC_012884	Streptococcus phage M102, complete genome	17907-17936	3	0.9
NC_017768_2	2.2\|758530\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758530-758559	30	DQ386162	Streptococcus phage M102AD, complete genome	18029-18058	3	0.9
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	MN693893	Marine virus AFVG_250M400, complete genome	23649-23678	6	0.8
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	MN694299	Marine virus AFVG_250M399, complete genome	26813-26842	6	0.8
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	MN694718	Marine virus AFVG_250M398, complete genome	26807-26836	6	0.8
NC_017768_2	2.9\|758992\|30\|NC_017768\|CRT	758992-759021	30	AP013777	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C94-MedDCM-OCT-S24-C128, * SEQUENCING IN PROGRESS *	2099-2128	6	0.8
NC_017768_2	2.3\|758596\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758596-758625	30	NC_014653	Photobacterium damselae subsp. damselae virulence plasmid pPHDD1, complete sequence, isolate RM71	115536-115565	7	0.767
NC_017768_2	2.3\|758596\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758596-758625	30	NC_029073	Geobacillus virus E3, complete genome	26616-26645	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_KX683283	Escherichia coli strain EcU443 plasmid pECSE_01, complete sequence	46068-46097	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NC_022651	Escherichia coli JJ1886 plasmid pJJ1886_5, complete sequence	92111-92140	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP023854	Escherichia coli strain 2/0 plasmid p2_0.1, complete sequence	107655-107684	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_KT754160	Shigella dysenteriae strain 80-547 plasmid p80-547, complete sequence	21810-21839	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LS992182	Escherichia coli isolate Escherichia coli str. TO124 plasmid 3, complete sequence	63510-63539	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NC_013122	Escherichia coli plasmid pEK499, complete sequence	97801-97830	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP054941	Escherichia coli strain MS6192 plasmid pMS6192A-NDM, complete sequence	109077-109106	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP036244	Escherichia coli strain S65EC plasmid pS65EC, complete sequence	131800-131829	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP023845	Escherichia coli strain 4/1-1 plasmid p4_1_1.1, complete sequence	79390-79419	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP040922	Escherichia coli strain FC853_EC plasmid p853EC3, complete sequence	97681-97710	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP013832	Escherichia coli strain CD306 plasmid pCD306, complete sequence	39093-39122	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP013833	Escherichia coli strain JJ2434 plasmid pJJ2434_1, complete sequence	110912-110941	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP019014	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_KPC, complete sequence	66955-66984	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP037912	Escherichia coli strain YSP8-1 plasmid pYSP8-1-CTX-M-14, complete sequence	16130-16159	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP021204	Escherichia coli strain Z1002 plasmid p1002-4, complete sequence	75667-75696	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP024816	Escherichia coli strain CREC-629 plasmid pCREC-629_1, complete sequence	53804-53833	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	LO017738	Escherichia coli str. 690 plasmid pRCS57, complete genome	103286-103315	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP025737	Salmonella enterica strain FORC_079 plasmid pFORC79_2, complete sequence	98225-98254	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LR025102	Escherichia coli isolate EC-1639 plasmid 2, complete sequence	48487-48516	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP018978	Escherichia coli strain Ecol_656 plasmid pEC656_1, complete sequence	11709-11738	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP013657	Escherichia coli strain uk_P46212 plasmid unnamed, complete sequence	27437-27466	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NC_014385	Escherichia coli plasmid pEC_L46, complete sequence	11733-11762	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NC_014384	Escherichia coli plasmid pEC_L8, complete sequence	2553-2582	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP018947	Escherichia coli strain Ecol_224 plasmid pEC224_1, complete sequence	109756-109785	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP019028	Escherichia coli strain Ecol_881 plasmid pEC881_1, complete sequence	80210-80239	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP047406	Escherichia coli strain MS6193 plasmid pMS6193A-NDM, complete sequence	109081-109110	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LS992191	Escherichia coli isolate Escherichia coli str. TO148 plasmid 2, complete sequence	63510-63539	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP023361	Escherichia coli strain 1943 plasmid p80, complete sequence	40400-40429	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022364	Escherichia coli E309 plasmid pE309_IMP6 DNA, complete sequence	113944-113973	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022369	Escherichia coli E319 plasmid pE319_IMP6 DNA, complete sequence	142911-142940	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_HG941719	Escherichia coli O25b:H4-ST131 strain EC958 plasmid pEC958, complete sequence	115867-115896	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	CP025574	Escherichia coli strain E-1246 plasmid pE1246_1, complete sequence	20842-20871	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP021937	Escherichia coli strain AR_0055 plasmid unitig_3j3rc_linear, complete sequence	49113-49142	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP023145	Escherichia coli strain CFSAN061770 plasmid pEGY3, complete sequence	35536-35565	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LR130546	Escherichia coli strain B36 isolate B36 plasmid 2	92777-92806	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP033847	Escherichia coli strain FDAARGOS_497 plasmid unnamed1, complete sequence	71995-72024	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295821	Escherichia coli O25b:H4-ST131 strain B316 plasmid pB316, complete sequence	107175-107204	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295822	Escherichia coli O25b:H4-ST131 strain 76 plasmid p76, complete sequence	80788-80817	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295823	Escherichia coli O25b:H4-ST131 strain 461 plasmid p461, complete sequence	119030-119059	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295826	Escherichia coli O25b:H4-ST131 strain 113 plasmid p113, complete sequence	76934-76963	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295831	Escherichia coli O25b:H4-ST131 strain 396 plasmid p396, complete sequence	109835-109864	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295833	Escherichia coli O25b:H4-ST131 strain 418 plasmid p418, complete sequence	53878-53907	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295834	Escherichia coli O25b:H4-ST131 strain 56 plasmid p56, complete sequence	83234-83263	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	JX127248	Uncultured bacterium plasmid pRSB225, complete sequence	126860-126889	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP014321	Escherichia coli JJ1887 plasmid pJJ1887-4, complete sequence	53411-53440	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LT985213	Escherichia coli strain 708 plasmid RCS102_p, complete sequence	24600-24629	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295818	Escherichia coli O25b:H4-ST131 strain U60 plasmid pU60, complete sequence	107507-107536	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK295820	Escherichia coli O25b:H4-ST131 strain B28 plasmid pB28, complete sequence	87593-87622	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_MN328348	Salmonella enterica subsp. enterica serovar Enteritidis strain S14 plasmid pTS14, complete sequence	44124-44153	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_MN218686	Escherichia coli strain 5M plasmid pISV_IncFII_NDM-5, complete sequence	44432-44461	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_MF156697	Escherichia coli strain BTR plasmid pBTR-CTXM, complete sequence	60385-60414	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_KY706108	Escherichia coli strain pAA-ST131 plasmid ESBL20150001, complete sequence	29751-29780	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LC492469	Escherichia coli strain M216 plasmid pM216_mF, complete sequence	113756-113785	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_KT988018	Escherichia coli strain V282 plasmid pEcoV282, complete sequence	89136-89165	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP015077	Escherichia coli strain Ecol_448 plasmid pEC448_1, complete sequence	37128-37157	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP041338	Escherichia coli strain CCUG 73778 plasmid pSUH-1, complete sequence	42496-42525	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP023850	Escherichia coli strain 4/0 plasmid p4_0.1, complete sequence	79376-79405	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP048331	Escherichia coli strain 10 plasmid p010_A, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP048338	Escherichia coli strain 142 plasmid p142_A-OXA181, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LR130556	Escherichia coli strain MS14385 isolate MS14385 plasmid 2	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP013836	Escherichia coli strain JJ1897 plasmid pJJ1897_1, complete sequence	77176-77205	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP026724	Escherichia coli strain 266917_2 plasmid p266917_2_01, complete sequence	6925-6954	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP020515	Escherichia coli strain 219 plasmid unnamed, complete sequence	102769-102798	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP024718	Escherichia coli strain LS4 plasmid p1LS4, complete sequence	25027-25056	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP024721	Escherichia coli isolate NQ3 plasmid p1NQ3, complete sequence	1845-1874	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP024831	Escherichia coli strain CREC-532 plasmid pCREC-532_1, complete sequence	34611-34640	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP008715	Escherichia coli strain ST648 plasmid pEC648_1, complete sequence	52435-52464	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP051695	Escherichia coli strain SCU-313 plasmid pSCU-313-1, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP009860	Escherichia coli strain ECONIH1 plasmid pECO-824, complete sequence	46369-46398	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP043407	Escherichia coli strain NMBU-W13E19 plasmid pNMBU-W13E19_01, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022366	Escherichia coli E312 plasmid pE312_IMP6 DNA, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022367	Escherichia coli E317 plasmid pE317_IMP6 DNA, complete sequence	19358-19387	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022368	Escherichia coli E318 plasmid pE318_IMP6 DNA, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP025708	Escherichia coli strain YDC107 plasmid pYDC107_184, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022363	Escherichia coli E303 plasmid pE303_IMP6 DNA, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	AP022361	Escherichia coli E301 plasmid pE301_IMP6 DNA, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP050735	Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 plasmid pST90-1, complete sequence	8224-8253	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP033761	Escherichia coli strain FDAARGOS_536 plasmid unnamed1, complete sequence	67931-67960	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LT985271	Escherichia coli strain 661 plasmid RCS59_p, complete sequence	80893-80922	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_LT985221	Escherichia coli strain TN03 plasmid RCS22_p, complete sequence	106251-106280	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_CP018954	Escherichia coli strain Ecol_316 plasmid pEC316_3, complete sequence	50196-50225	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_MK797990	Salmonella enterica subsp. enterica serovar Wien strain ZM3 plasmid pZM3, complete sequence	6887-6916	7	0.767
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	NZ_AP018939	Escherichia coli strain JSWP006 plasmid pJSWP006_1, complete sequence	6887-6916	7	0.767
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	248784-248813	7	0.767
NC_017768_2	2.8\|758926\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758926-758955	30	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	182002-182031	7	0.767
NC_017768_2	2.8\|758926\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758926-758955	30	NC_029030	Streptococcus phage APCM01, complete genome	16432-16461	7	0.767
NC_017768_2	2.8\|758926\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758926-758955	30	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	72409-72438	7	0.767
NC_017768_2	2.8\|758926\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758926-758955	30	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	217122-217151	7	0.767
NC_017768_2	2.8\|758926\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758926-758955	30	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	217386-217415	7	0.767
NC_017768_2	2.3\|758596\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758596-758625	30	MN693139	Marine virus AFVG_25M90, complete genome	18796-18825	8	0.733
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	168652-168681	8	0.733
NC_017768_2	2.8\|758926\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758926-758955	30	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	79289-79318	8	0.733
NC_017768_2	2.9\|758992\|30\|NC_017768\|CRT	758992-759021	30	KT997872	Uncultured Mediterranean phage uvDeep-CGR2-AD8-C175, complete genome	6526-6555	8	0.733
NC_017768_1	1.11\|430977\|34\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430977-431010	34	MN693498	Marine virus AFVG_25M563, complete genome	46167-46200	9	0.735
NC_017768_2	2.3\|758596\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758596-758625	30	MF042360	Pseudomonas phage Phabio, complete genome	170374-170403	9	0.7
NC_017768_2	2.3\|758596\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758596-758625	30	MF360958	Salicola phage SCTP-2, complete genome	135040-135069	9	0.7
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK448404	Streptococcus satellite phage Javan292, complete genome	12490-12519	9	0.7
NC_017768_2	2.5\|758728\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758728-758757	30	MK448405	Streptococcus satellite phage Javan293, complete genome	12866-12895	9	0.7
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	71444-71473	9	0.7
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	71430-71459	9	0.7
NC_017768_2	2.6\|758794\|30\|NC_017768\|CRISPRCasFinder,CRT,PILER-CR	758794-758823	30	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	71436-71465	9	0.7
NC_017768_1	1.8\|430777\|34\|NC_017768\|PILER-CR,CRISPRCasFinder,CRT	430777-430810	34	NC_013329	Staphylococcus aureus plasmid pWBG758, complete sequence	30846-30879	11	0.676

1. spacer 1.4|430513|35|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 1, identity: 0.971

aaatttggggcagtgattatgacgggacttacttt	CRISPR spacer
aaatttggggcagtgattatgatgggacttacttt	Protospacer
**********************.************

2. spacer 1.4|430513|35|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 1, identity: 0.971

aaatttggggcagtgattatgacgggacttacttt	CRISPR spacer
aaatttggggcagtgattatgatgggacttacttt	Protospacer
**********************.************

3. spacer 1.4|430513|35|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 1, identity: 0.971

aaatttggggcagtgattatgacgggacttacttt	CRISPR spacer
aaatttggggcagtgattatgatgggacttacttt	Protospacer
**********************.************

4. spacer 1.4|430513|35|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 1, identity: 0.971

aaatttggggcagtgattatgacgggacttacttt	CRISPR spacer
aaatttggggcagtgattatgacggtacttacttt	Protospacer
************************* *********

5. spacer 1.1|430315|34|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 2, identity: 0.941

tcaaacaacatgcttatccggtgataacactgac	CRISPR spacer
tcaaacaacatgcttatccagcgataacactgac	Protospacer
*******************.*.************

6. spacer 2.2|758530|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 2, identity: 0.933

tgaagtgcaagcttacgtgactgactcgcg	CRISPR spacer
tgaagtacaagcttacgtgacggactcgcg	Protospacer
******.************** ********

7. spacer 2.2|758530|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 3, identity: 0.9

tgaagtgcaagcttacgtgactgactcgcg	CRISPR spacer
tgaagtacaagcttacgtgactgactcaag	Protospacer
******.********************. *

8. spacer 2.2|758530|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 3, identity: 0.9

tgaagtgcaagcttacgtgactgactcgcg	CRISPR spacer
tgaagtacaagcttacgtgactgactcaag	Protospacer
******.********************. *

9. spacer 2.2|758530|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 3, identity: 0.9

tgaagtgcaagcttacgtgactgactcgcg	CRISPR spacer
tgaagtccaagcttacgtgactgactcaag	Protospacer
****** ********************. *

10. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MN693893 (Marine virus AFVG_250M400, complete genome) position: , mismatch: 6, identity: 0.8

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
ttgacccatcaacgaaagttcctttcgccc	Protospacer
*** *********.***********. *

11. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MN694299 (Marine virus AFVG_250M399, complete genome) position: , mismatch: 6, identity: 0.8

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
ttgacccatcaacgaaagttcctttcgccc	Protospacer
*** *********.***********. *

12. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MN694718 (Marine virus AFVG_250M398, complete genome) position: , mismatch: 6, identity: 0.8

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
ttgacccatcaacgaaagttcctttcgccc	Protospacer
*** *********.***********. *

13. spacer 2.9|758992|30|NC_017768|CRT matches to AP013777 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C94-MedDCM-OCT-S24-C128, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

aatagaatcaaattctcctaagtcagttaa	CRISPR spacer
agtagaatcaaattcaccaaagtcagtagg	Protospacer
*.************* ** ******** ..

14. spacer 2.3|758596|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_014653 (Photobacterium damselae subsp. damselae virulence plasmid pPHDD1, complete sequence, isolate RM71) position: , mismatch: 7, identity: 0.767

taatgtaaaaggcttatatgaataataaat	CRISPR spacer
tcatgtaaacggcttatctgaataacgatg	Protospacer
* ******* ******* *******..*

15. spacer 2.3|758596|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 7, identity: 0.767

taatgtaaaaggcttatatgaataataaat	CRISPR spacer
taagaaaaaaggattatatgaataataccg	Protospacer
*** . ****** **************

16. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX683283 (Escherichia coli strain EcU443 plasmid pECSE_01, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

17. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_022651 (Escherichia coli JJ1886 plasmid pJJ1886_5, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

18. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023854 (Escherichia coli strain 2/0 plasmid p2_0.1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

19. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT754160 (Shigella dysenteriae strain 80-547 plasmid p80-547, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

20. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LS992182 (Escherichia coli isolate Escherichia coli str. TO124 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

21. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_013122 (Escherichia coli plasmid pEK499, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

22. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054941 (Escherichia coli strain MS6192 plasmid pMS6192A-NDM, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

23. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036244 (Escherichia coli strain S65EC plasmid pS65EC, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

24. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023845 (Escherichia coli strain 4/1-1 plasmid p4_1_1.1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

25. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040922 (Escherichia coli strain FC853_EC plasmid p853EC3, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

26. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013832 (Escherichia coli strain CD306 plasmid pCD306, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

27. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013833 (Escherichia coli strain JJ2434 plasmid pJJ2434_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

28. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019014 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_KPC, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

29. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037912 (Escherichia coli strain YSP8-1 plasmid pYSP8-1-CTX-M-14, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

30. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021204 (Escherichia coli strain Z1002 plasmid p1002-4, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

31. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024816 (Escherichia coli strain CREC-629 plasmid pCREC-629_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

32. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to LO017738 (Escherichia coli str. 690 plasmid pRCS57, complete genome) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

33. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025737 (Salmonella enterica strain FORC_079 plasmid pFORC79_2, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

34. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR025102 (Escherichia coli isolate EC-1639 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

35. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018978 (Escherichia coli strain Ecol_656 plasmid pEC656_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

36. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013657 (Escherichia coli strain uk_P46212 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

37. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_014385 (Escherichia coli plasmid pEC_L46, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

38. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_014384 (Escherichia coli plasmid pEC_L8, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

39. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018947 (Escherichia coli strain Ecol_224 plasmid pEC224_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

40. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019028 (Escherichia coli strain Ecol_881 plasmid pEC881_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

41. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047406 (Escherichia coli strain MS6193 plasmid pMS6193A-NDM, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

42. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LS992191 (Escherichia coli isolate Escherichia coli str. TO148 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

43. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023361 (Escherichia coli strain 1943 plasmid p80, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

44. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022364 (Escherichia coli E309 plasmid pE309_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

45. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022369 (Escherichia coli E319 plasmid pE319_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

46. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG941719 (Escherichia coli O25b:H4-ST131 strain EC958 plasmid pEC958, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

47. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to CP025574 (Escherichia coli strain E-1246 plasmid pE1246_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

48. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021937 (Escherichia coli strain AR_0055 plasmid unitig_3j3rc_linear, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

49. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023145 (Escherichia coli strain CFSAN061770 plasmid pEGY3, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

50. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR130546 (Escherichia coli strain B36 isolate B36 plasmid 2) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

51. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033847 (Escherichia coli strain FDAARGOS_497 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

52. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295821 (Escherichia coli O25b:H4-ST131 strain B316 plasmid pB316, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

53. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295822 (Escherichia coli O25b:H4-ST131 strain 76 plasmid p76, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

54. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295823 (Escherichia coli O25b:H4-ST131 strain 461 plasmid p461, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

55. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295826 (Escherichia coli O25b:H4-ST131 strain 113 plasmid p113, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

56. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295831 (Escherichia coli O25b:H4-ST131 strain 396 plasmid p396, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

57. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295833 (Escherichia coli O25b:H4-ST131 strain 418 plasmid p418, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

58. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295834 (Escherichia coli O25b:H4-ST131 strain 56 plasmid p56, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

59. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to JX127248 (Uncultured bacterium plasmid pRSB225, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

60. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014321 (Escherichia coli JJ1887 plasmid pJJ1887-4, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

61. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985213 (Escherichia coli strain 708 plasmid RCS102_p, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

62. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295818 (Escherichia coli O25b:H4-ST131 strain U60 plasmid pU60, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

63. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK295820 (Escherichia coli O25b:H4-ST131 strain B28 plasmid pB28, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

64. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN328348 (Salmonella enterica subsp. enterica serovar Enteritidis strain S14 plasmid pTS14, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

65. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN218686 (Escherichia coli strain 5M plasmid pISV_IncFII_NDM-5, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

66. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF156697 (Escherichia coli strain BTR plasmid pBTR-CTXM, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

67. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY706108 (Escherichia coli strain pAA-ST131 plasmid ESBL20150001, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

68. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LC492469 (Escherichia coli strain M216 plasmid pM216_mF, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

69. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT988018 (Escherichia coli strain V282 plasmid pEcoV282, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

70. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015077 (Escherichia coli strain Ecol_448 plasmid pEC448_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

71. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041338 (Escherichia coli strain CCUG 73778 plasmid pSUH-1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

72. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023850 (Escherichia coli strain 4/0 plasmid p4_0.1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

73. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048331 (Escherichia coli strain 10 plasmid p010_A, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

74. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048338 (Escherichia coli strain 142 plasmid p142_A-OXA181, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

75. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR130556 (Escherichia coli strain MS14385 isolate MS14385 plasmid 2) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

76. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013836 (Escherichia coli strain JJ1897 plasmid pJJ1897_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

77. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026724 (Escherichia coli strain 266917_2 plasmid p266917_2_01, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

78. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020515 (Escherichia coli strain 219 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

79. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024718 (Escherichia coli strain LS4 plasmid p1LS4, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

80. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024721 (Escherichia coli isolate NQ3 plasmid p1NQ3, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

81. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024831 (Escherichia coli strain CREC-532 plasmid pCREC-532_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

82. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008715 (Escherichia coli strain ST648 plasmid pEC648_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

83. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051695 (Escherichia coli strain SCU-313 plasmid pSCU-313-1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

84. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009860 (Escherichia coli strain ECONIH1 plasmid pECO-824, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

85. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043407 (Escherichia coli strain NMBU-W13E19 plasmid pNMBU-W13E19_01, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

86. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022366 (Escherichia coli E312 plasmid pE312_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

87. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022367 (Escherichia coli E317 plasmid pE317_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

88. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022368 (Escherichia coli E318 plasmid pE318_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

89. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025708 (Escherichia coli strain YDC107 plasmid pYDC107_184, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

90. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022363 (Escherichia coli E303 plasmid pE303_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

91. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to AP022361 (Escherichia coli E301 plasmid pE301_IMP6 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

92. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050735 (Salmonella enterica subsp. enterica serovar Typhimurium strain ST90 plasmid pST90-1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

93. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033761 (Escherichia coli strain FDAARGOS_536 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

94. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985271 (Escherichia coli strain 661 plasmid RCS59_p, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

95. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985221 (Escherichia coli strain TN03 plasmid RCS22_p, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

96. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018954 (Escherichia coli strain Ecol_316 plasmid pEC316_3, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

97. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK797990 (Salmonella enterica subsp. enterica serovar Wien strain ZM3 plasmid pZM3, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

98. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018939 (Escherichia coli strain JSWP006 plasmid pJSWP006_1, complete sequence) position: , mismatch: 7, identity: 0.767

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cacctccagctcagctttcaacgctttacg	Protospacer
.* .****. *****************  *

99. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
cgggctgatcaacaaaagatcctttttctg	Protospacer
. * *. *********** ********* *

100. spacer 2.8|758926|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 7, identity: 0.767

-----taccgcttatgcagatgatgccgaaggaaa	CRISPR spacer
agatttagc-----tgcatatgatgccgaaggaaa	Protospacer
     ** *     **** ****************

101. spacer 2.8|758926|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_029030 (Streptococcus phage APCM01, complete genome) position: , mismatch: 7, identity: 0.767

taccgcttatgcagatgatgccgaaggaaa	CRISPR spacer
tattgcttatgcagatgatgacaaaggcgc	Protospacer
**..**************** *.**** .

102. spacer 2.8|758926|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

-----taccgcttatgcagatgatgccgaaggaaa	CRISPR spacer
agatttagc-----tgcatatgatgccgaaggaaa	Protospacer
     ** *     **** ****************

103. spacer 2.8|758926|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

-----taccgcttatgcagatgatgccgaaggaaa	CRISPR spacer
agatttagc-----tgcatatgatgccgaaggaaa	Protospacer
     ** *     **** ****************

104. spacer 2.8|758926|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

-----taccgcttatgcagatgatgccgaaggaaa	CRISPR spacer
agatttagc-----tgcatatgatgccgaaggaaa	Protospacer
     ** *     **** ****************

105. spacer 2.3|758596|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MN693139 (Marine virus AFVG_25M90, complete genome) position: , mismatch: 8, identity: 0.733

taatgtaaaaggcttatatgaataataaat	CRISPR spacer
aagcagaaaaggctcatatgaaaaataaaa	Protospacer
 *... ********.******* ******

106. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 8, identity: 0.733

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
taggaaactcaacaaaaattcctttttcaa	Protospacer
* *     *********.***********.

107. spacer 2.8|758926|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 8, identity: 0.733

taccgcttatgcagatgatgccgaaggaaa	CRISPR spacer
atttaattatgcagatgatgacgaagaaaa	Protospacer
  ... ************** *****.***

108. spacer 2.9|758992|30|NC_017768|CRT matches to KT997872 (Uncultured Mediterranean phage uvDeep-CGR2-AD8-C175, complete genome) position: , mismatch: 8, identity: 0.733

aatagaatcaaattctcctaagtcagttaa	CRISPR spacer
gtcagaatcaaattctccaaagtcagaagc	Protospacer
. .*************** *******  .

109. spacer 1.11|430977|34|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to MN693498 (Marine virus AFVG_25M563, complete genome) position: , mismatch: 9, identity: 0.735

taaagctgatgtaaaagccgatagtcctttgcgc	CRISPR spacer
aaaggtagaagtaaaagctgatagtcctttgttt	Protospacer
 **.*. ** ********.************. .

110. spacer 2.3|758596|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MF042360 (Pseudomonas phage Phabio, complete genome) position: , mismatch: 9, identity: 0.7

taatgtaaaaggcttatatgaataataaat	CRISPR spacer
caatttaaaaggcttttatgaatacctgcc	Protospacer
.*** ********** ******** . . .

111. spacer 2.3|758596|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 9, identity: 0.7

taatgtaaaaggcttatatgaataataaat	CRISPR spacer
aaatgtaaaaagcttatatgattatcctga	Protospacer
 *********.********** ** .  .

112. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK448404 (Streptococcus satellite phage Javan292, complete genome) position: , mismatch: 9, identity: 0.7

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cgccattaagtcagctatcaacgctattag	Protospacer
.. . ..********* ******** ****

113. spacer 2.5|758728|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to MK448405 (Streptococcus satellite phage Javan293, complete genome) position: , mismatch: 9, identity: 0.7

taattccaagtcagctttcaacgcttttag	CRISPR spacer
cgccattaagtcagctatcaacgctattag	Protospacer
.. . ..********* ******** ****

114. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 9, identity: 0.7

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
catagtcatcaacaaaagttcccatttcat	Protospacer
.    .****************. *****

115. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 9, identity: 0.7

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
catagtcatcaacaaaagttcccatttcat	Protospacer
.    .****************. *****

116. spacer 2.6|758794|30|NC_017768|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 9, identity: 0.7

ttgtcccatcaacaaaagttcctttttcag	CRISPR spacer
catagtcatcaacaaaagttcccatttcat	Protospacer
.    .****************. *****

117. spacer 1.8|430777|34|NC_017768|PILER-CR,CRISPRCasFinder,CRT matches to NC_013329 (Staphylococcus aureus plasmid pWBG758, complete sequence) position: , mismatch: 11, identity: 0.676

atctactttgataaagacacaaaaacacttgact	CRISPR spacer
gaaacgtttgataatgacacaaagacacttaaag	Protospacer
.     ******** ********.******.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

295993 : 344646

Brevibacillus_phage(22.22%)

transposase,bacteriocin,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002262126.1\|295993_296893_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_014677752.1\|297029_299642_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_002265123.1\|299643_300351_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-30	38.1
WP_014677753.1\|300458_301034_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014677754.1\|301026_301563_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_002262121.1\|301916_302609_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.9e-26	30.9
WP_002262120.1\|302977_303469_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_002276047.1\|303455_304625_+	DnaD domain protein	NA	NA	NA	NA
WP_002265451.1\|304625_305525_+	primosomal protein DnaI	S5MU12	Brevibacillus_phage	4.1e-27	31.2
WP_002292004.1\|305537_306848_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_014677755.1\|306922_307549_+	hypothetical protein	NA	NA	NA	NA
WP_002292006.1\|307596_308235_+	VTT domain-containing protein	NA	NA	NA	NA
WP_002262114.1\|308706_309459_+	response regulator transcription factor	NA	NA	NA	NA
WP_002292008.1\|309455_310781_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_002270250.1\|310922_311063_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_002265368.1\|311329_311560_+\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_002310604.1\|311690_312092_+	hypothetical protein	NA	NA	NA	NA
WP_002263912.1\|314037_314442_+	hypothetical protein	NA	NA	NA	NA
WP_002265308.1\|315216_315381_+	hypothetical protein	NA	NA	NA	NA
WP_002264173.1\|315785_315998_+	hypothetical protein	NA	NA	NA	NA
WP_002270918.1\|316161_316350_+\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_002299839.1\|316834_317863_+	thiol reductase thioredoxin	NA	NA	NA	NA
WP_162137384.1\|318050_318212_+	hypothetical protein	NA	NA	NA	NA
WP_002270929.1\|318658_318853_+	hypothetical protein	NA	NA	NA	NA
WP_044560220.1\|318880_319273_+	hypothetical protein	NA	NA	NA	NA
WP_044560222.1\|319618_319810_+	hypothetical protein	NA	NA	NA	NA
WP_002270889.1\|319859_320021_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_002270890.1\|320414_320573_+	glycerol kinase	NA	NA	NA	NA
WP_002270937.1\|321049_321241_+	hypothetical protein	NA	NA	NA	NA
WP_044560226.1\|321822_323106_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.7e-93	51.1
WP_014677762.1\|323629_324703_+	acyltransferase	NA	NA	NA	NA
WP_002263350.1\|324939_325308_-	DUF956 family protein	NA	NA	NA	NA
WP_002268242.1\|325646_326573_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_014677763.1\|326587_327406_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_002265466.1\|327440_328433_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_002263356.1\|329309_329780_-	hypothetical protein	NA	NA	NA	NA
WP_002271845.1\|329878_332242_-	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	3.4e-65	28.1
WP_002263358.1\|332327_332915_-	signal peptidase I	NA	NA	NA	NA
WP_002280675.1\|332934_333846_-	ribonuclease HIII	NA	NA	NA	NA
WP_002263360.1\|334041_334347_+	hypothetical protein	NA	NA	NA	NA
WP_002263361.1\|334343_334889_+	CvpA family protein	NA	NA	NA	NA
WP_014677765.1\|334956_337287_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	3.2e-23	52.6
WP_002263363.1\|337361_337676_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.1e-16	46.2
WP_002267521.1\|337773_338823_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_014677766.1\|339014_340160_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002269894.1\|341229_341400_-	hypothetical protein	NA	NA	NA	NA
WP_002263367.1\|341704_341950_+	hypothetical protein	NA	NA	NA	NA
WP_002261866.1\|342105_342396_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_002261867.1\|342413_342908_+	single-stranded DNA-binding protein	A0A286QNX2	Streptococcus_phage	1.8e-56	70.5
WP_000068664.1\|342937_343177_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_014677767.1\|343443_344646_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	9.8e-194	86.2

DBSCAN-SWA_2

510019 : 523862

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002262678.1\|510019_510784_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-16	26.4
WP_002262679.1\|510783_511494_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.2e-19	28.9
WP_002264029.1\|511609_512269_+	CBS domain-containing protein	M1NSC5	Streptococcus_phage	8.6e-67	60.6
WP_002262681.1\|512344_512983_+	dTMP kinase	M1PSC7	Streptococcus_phage	3.4e-76	65.6
WP_014677829.1\|512995_513871_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	7.6e-79	54.5
WP_002264026.1\|513867_514674_+	signal peptidase II	NA	NA	NA	NA
WP_002262684.1\|514666_514999_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	6.1e-29	58.2
WP_002264025.1\|515004_515871_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.7e-115	73.9
WP_014677830.1\|516175_517411_+	ammonium transporter	NA	NA	NA	NA
WP_002264023.1\|517426_517768_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_014677831.1\|517987_519079_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.6e-169	79.0
WP_002270504.1\|519196_519337_+	hypothetical protein	NA	NA	NA	NA
WP_014677832.1\|519487_520042_+	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	9.5e-51	63.9
WP_002262691.1\|520127_521309_+	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.9e-180	79.6
WP_014677833.1\|521397_521892_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	8.2e-46	55.4
WP_002272344.1\|521928_522282_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	2.1e-40	67.0
WP_002268056.1\|522346_522970_+	endonuclease III	NA	NA	NA	NA
WP_044560782.1\|523034_523862_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	2.1e-123	76.9

DBSCAN-SWA_3

1007100 : 1015884

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014677992.1\|1007100_1007691_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.1e-15	33.2
WP_002264269.1\|1007700_1008963_+	serine hydroxymethyltransferase	A0A219YB23	Aeromonas_phage	4.3e-99	52.3
WP_014677993.1\|1008959_1009937_+	nucleoid-associated protein	NA	NA	NA	NA
WP_002286819.1\|1009938_1010553_+	lysozyme family protein	A0A223LKM8	Bacillus_phage	1.6e-22	37.6
WP_014677994.1\|1010562_1012296_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-39	26.0
WP_014677995.1\|1012292_1014038_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.8e-54	29.2
WP_002264266.1\|1014168_1015884_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	7.5e-272	82.5

DBSCAN-SWA_4

1051988 : 1057721

Streptococcus_phage(83.33%)

integrase

attL 1043155:1043169|attR 1061916:1061930

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1043155:1043169	attL	NA	NA	NA	NA
WP_014678006.1\|1051988_1052900_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-42	46.2
WP_002265016.1\|1053120_1054191_+	tyrosine recombinase XerS	NA	NA	NA	NA
WP_002276369.1\|1054591_1055809_-\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	6.2e-188	78.8
WP_002262306.1\|1055889_1056093_-	excisionase family DNA-binding protein	A0A1S5SF07	Streptococcus_phage	1.8e-28	89.6
WP_002271367.1\|1056553_1056784_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	6.9e-32	88.2
WP_014678007.1\|1056780_1057203_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	3.4e-61	84.3
WP_080007638.1\|1057532_1057721_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	6.3e-15	64.2
1061916:1061930	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1158630 : 1165480

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014678041.1\|1158630_1160385_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.1e-43	27.6
WP_002283869.1\|1160374_1162177_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-32	24.7
WP_002263292.1\|1162180_1162615_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014678042.1\|1163166_1163820_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.0e-59	51.9
WP_002266457.1\|1163819_1164266_+	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	3.8e-42	60.6
WP_002263289.1\|1164262_1164979_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	4.8e-63	48.4
WP_014678043.1\|1164991_1165480_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-45	57.2

DBSCAN-SWA_6

1941671 : 1970206

Orpheovirus(14.29%)

holin,transposase,integrase,tRNA

attL 1947216:1947231|attR 1966725:1966740

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014678298.1\|1941671_1943363_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	4.3e-78	33.7
WP_002264212.1\|1943410_1944289_-	YitT family protein	M1Q1P6	Streptococcus_phage	1.6e-47	36.6
WP_002264213.1\|1944319_1945258_-	YitT family protein	NA	NA	NA	NA
WP_014678299.1\|1945244_1947014_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	6.8e-18	26.7
1947216:1947231	attL	NA	NA	NA	NA
WP_002283554.1\|1947238_1948528_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_014678300.1\|1948820_1950665_+	APC family permease	NA	NA	NA	NA
WP_002262412.1\|1950990_1951140_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_002265642.1\|1951415_1951673_-	hypothetical protein	NA	NA	NA	NA
WP_014678302.1\|1951695_1951965_-	hypothetical protein	NA	NA	NA	NA
WP_002284511.1\|1951990_1953088_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_014678303.1\|1953182_1954544_+	multidrug efflux MFS transporter MdeA	NA	NA	NA	NA
WP_002291812.1\|1954937_1955066_-	hypothetical protein	NA	NA	NA	NA
WP_014678304.1\|1955397_1958031_-	ABC transporter permease	NA	NA	NA	NA
WP_002284508.1\|1958043_1958745_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.2e-35	40.5
WP_002284507.1\|1958759_1960091_-	multidrug transporter MatE	NA	NA	NA	NA
WP_002286967.1\|1960083_1960848_-	hypothetical protein	NA	NA	NA	NA
WP_002270840.1\|1961069_1961651_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_115174147.1\|1961878_1961989_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_148270967.1\|1962420_1963323_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.5e-42	64.7
WP_158309826.1\|1963680_1963839_+\|transposase	transposase	NA	NA	NA	NA
WP_002270353.1\|1964046_1964295_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_002270354.1\|1964346_1964475_+\|transposase	transposase	NA	NA	NA	NA
WP_002270355.1\|1964681_1965983_-	glycosyltransferase family 2 protein	S5WBE2	Pseudomonas_phage	8.9e-07	27.2
WP_002270356.1\|1965985_1966285_-	DUF3884 family protein	NA	NA	NA	NA
WP_002270357.1\|1966310_1966493_-	hypothetical protein	NA	NA	NA	NA
WP_002300850.1\|1966780_1967329_-	histidine phosphatase family protein	NA	NA	NA	NA
1966725:1966740	attR	NA	NA	NA	NA
WP_002262420.1\|1967394_1967769_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014678308.1\|1967847_1968603_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002262422.1\|1969054_1970206_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	5.1e-14	30.2

DBSCAN-SWA_7

1993232 : 2004833

Staphylococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002262446.1\|1993232_1993838_-	transglycosylase SLT domain-containing protein	Q4Z8Z7	Staphylococcus_phage	5.5e-28	62.2
WP_002262447.1\|1993999_1994866_-	LysM peptidoglycan-binding domain-containing protein	A0A288TY55	Enterococcus_phage	1.3e-22	75.7
WP_002262448.1\|1995054_1995849_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_002262449.1\|1995841_1996684_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	9.1e-13	26.6
WP_002267083.1\|1996659_1997502_-	energy-coupling factor transporter ATPase	F2Y302	Organic_Lake_phycodnavirus	3.0e-16	30.6
WP_002262451.1\|1997505_1998048_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_002270375.1\|1998059_1999037_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014678314.1\|1999109_2000402_-	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	8.0e-08	26.3
WP_002266407.1\|2000403_2001651_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	2.5e-99	45.4
WP_002262455.1\|2001729_2002095_+	S4 domain-containing protein YaaA	A0A1X9I5V8	Streptococcus_phage	3.1e-18	57.3
WP_014678315.1\|2002097_2003189_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_002262457.1\|2003351_2004833_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.6e-95	40.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017768

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection