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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017671 Stenotrophomonas maltophilia D457, complete genome 8 crisprs csa3,DEDDh,WYL,PD-DExK,cas3,Cas9_archaeal,DinG 0 3 6 0

Results visualization

1. NC_017671
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_1 135607-135720 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_2 408819-409113 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_3 698162-698247 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_4 1885942-1886035 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_5 1917846-1917948 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_6 3725512-3725623 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_7 3734890-3734985 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017671_8 4444410-4444512 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017671_2 2.5|409060|35|NC_017671|CRT 409060-409094 35 NZ_CP030864 Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence 64381-64415 7 0.8
NC_017671_2 2.1|408838|35|NC_017671|CRT 408838-408872 35 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 1657243-1657277 8 0.771
NC_017671_2 2.1|408838|35|NC_017671|CRT 408838-408872 35 NZ_CP030263 Ensifer adhaerens strain Corn53 plasmid AA, complete sequence 508283-508317 8 0.771
NC_017671_2 2.4|409006|35|NC_017671|CRT 409006-409040 35 ASHF01000034 Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence 106755-106789 8 0.771
NC_017671_2 2.5|409060|35|NC_017671|CRT 409060-409094 35 NZ_CP029174 Methylobacterium sp. DM1 plasmid pLVM1, complete sequence 81396-81430 8 0.771
NC_017671_2 2.5|409060|35|NC_017671|CRT 409060-409094 35 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 354664-354698 8 0.771
NC_017671_2 2.5|409060|35|NC_017671|CRT 409060-409094 35 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 397482-397516 9 0.743
NC_017671_2 2.5|409060|35|NC_017671|CRT 409060-409094 35 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 396691-396725 9 0.743
NC_017671_2 2.1|408838|35|NC_017671|CRT 408838-408872 35 NZ_CP032686 Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence 711126-711160 10 0.714
NC_017671_2 2.1|408838|35|NC_017671|CRT 408838-408872 35 NZ_CP032691 Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence 702433-702467 10 0.714
NC_017671_2 2.1|408838|35|NC_017671|CRT 408838-408872 35 CP000876 Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence 140700-140734 10 0.714
NC_017671_2 2.5|409060|35|NC_017671|CRT 409060-409094 35 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 131159-131193 10 0.714

1. spacer 2.5|409060|35|NC_017671|CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

tgcttccggtctcgacgccttcgccgacgcggatg	CRISPR spacer
cggtgccggtcacgacgccttcgccgtcgcgcagg	Protospacer
.* * ****** ************** **** * *

2. spacer 2.1|408838|35|NC_017671|CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.771

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgccgatgcggatctcgaccgcgcggtcc	Protospacer
************.**** ********. ** * . 

3. spacer 2.1|408838|35|NC_017671|CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.771

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgccgatgcggatctcgaccgcgcggtcc	Protospacer
************.**** ********. ** * . 

4. spacer 2.4|409006|35|NC_017671|CRT matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 8, identity: 0.771

tcttgccggtgcgtgcgcggtcggcaaccttcacc	CRISPR spacer
tggagtcggtgcgggcgcggccggcaaccttgagc	Protospacer
*   *.******* ******.********** * *

5. spacer 2.5|409060|35|NC_017671|CRT matches to NZ_CP029174 (Methylobacterium sp. DM1 plasmid pLVM1, complete sequence) position: , mismatch: 8, identity: 0.771

tgcttccggtctcgacgccttcgccgacgcggatg	CRISPR spacer
ggccgccgttctcgacgtcttcgccgacgcgaccg	Protospacer
 **. *** ********.*************. .*

6. spacer 2.5|409060|35|NC_017671|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

tgcttccggtctcgacgccttcgccgacgcggatg	CRISPR spacer
accctccaccctcgacgcctgcgccgccgcggatg	Protospacer
  *.***. .********** ***** ********

7. spacer 2.5|409060|35|NC_017671|CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.743

tgcttccggtctcgacgccttcgccgacgcggatg	CRISPR spacer
ggtatgcgatctcgacgccttcgccgacggggtcc	Protospacer
 *. * **.******************** ** . 

8. spacer 2.5|409060|35|NC_017671|CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.743

tgcttccggtctcgacgccttcgccgacgcggatg	CRISPR spacer
ggtatgcgatctcgacgccttcgccgacggggtcc	Protospacer
 *. * **.******************** ** . 

9. spacer 2.1|408838|35|NC_017671|CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 10, identity: 0.714

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgcggacgcggatctcgacggcttcatcg	Protospacer
********* ******* ******* .  .*. .*

10. spacer 2.1|408838|35|NC_017671|CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 10, identity: 0.714

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgcggacgcggatctcgacggcttcatcg	Protospacer
********* ******* ******* .  .*. .*

11. spacer 2.1|408838|35|NC_017671|CRT matches to CP000876 (Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence) position: , mismatch: 10, identity: 0.714

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
tgacccgtccgacgcggctcgcgaccatgccgact	Protospacer
.* *..  ************ ****** *****. 

12. spacer 2.5|409060|35|NC_017671|CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 10, identity: 0.714

-------tgcttccggtctcgacgccttcgccgacgcggatg	CRISPR spacer
aggggaatac-------ctcgaagccttcgccgacgaggatg	Protospacer
       *.*       ***** ************* *****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 289680 : 306148 18 Stenotrophomonas_phage(30.77%) head,tail NA
DBSCAN-SWA_2 622164 : 630575 9 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_3 1746275 : 1787409 48 Stenotrophomonas_phage(88.89%) transposase,capsid,integrase,portal,terminase,tail attL 1753273:1753321|attR 1796290:1796338
DBSCAN-SWA_4 2418452 : 2429823 14 Stenotrophomonas_phage(77.78%) NA NA
DBSCAN-SWA_5 3338965 : 3354301 12 Xanthomonas_virus(57.14%) tail NA
DBSCAN-SWA_6 3610374 : 3694313 89 Stenotrophomonas_phage(77.27%) plate,capsid,integrase,portal,holin,tRNA,protease,terminase,tail,head,lysis attL 3641519:3641567|attR 3676953:3677001
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage