CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010945	Pseudomonas fluorescens NCIMB 11764 chromosome, complete genome	3 crisprs	RT,cas3,DEDDh,csa3,PD-DExK,DinG,WYL	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010945_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010945_1

5386136-5386248

Orphan

Consensus_repeat	Method
GATCGTCTGCAAGAGCTGCGTGAACGTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010945_1

>merge|NZ_CP010945|1|5386136-5386248|CRISPRCasFinder
GATCGTCTGCAAGAGCTGCGTGAACGTGTGGCTGAAGGTGGCTCTGATCGCCTGATCGAAAATCGCGTCGCTGAAGGCGGTGCCGATCGTCTGCAAGAACTGCGTGAACGTGT

>NZ_CP010945|1|1|5386136-5386248|CRISPRCasFinder
GATCGTCTGCAAGAGCTGCGTGAACGTGT	GGCTGAAGGTGGCTCTGATCGCCTGATCGAAAATCGCGTCGCTGAAGGCGGTGCC
GATCGTCTGCAAGAACTGCGTGAACGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010945.1\|WP_017339387.1\|5392524_5395443_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NZ_CP010945.1\|WP_017339378.1\|5384814_5385750_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293805
NZ_CP010945.1\|WP_080995152.1\|5390420_5391458_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP010945.1\|WP_017339371.1\|5378071_5378446_+\|DUF2784-domain-containing-protein	unknown	unknown	gnl\|CDD\|378502
NZ_CP010945.1\|WP_017339375.1\|5381794_5383168_+\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752
NZ_CP010945.1\|WP_017339384.1\|5389862_5390426_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP010945.1\|WP_162491063.1\|5384618_5384801_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP010945.1\|WP_017339381.1\|5387364_5387592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010945.1\|WP_017339374.1\|5381054_5381582_-\|DUF3087-domain-containing-protein	unknown	unknown	gnl\|CDD\|378624
NZ_CP010945.1\|WP_017339389.1\|5397465_5397954_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NZ_CP010945.1\|WP_017339373.1\|5379398_5380976_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP010945.1\|WP_017339388.1\|5395783_5397469_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NZ_CP010945.1\|WP_017339377.1\|5383881_5384622_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP010945.1\|WP_017339386.1\|5392058_5392244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010945.1\|WP_003202835.1\|5395442_5395787_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NZ_CP010945.1\|WP_017339372.1\|5378470_5379388_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP010945.1\|WP_017339376.1\|5383322_5383586_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP010945.1\|WP_017339380.1\|5386521_5387256_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP010945.1\|WP_017339370.1\|5377198_5377897_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP010945.1\|WP_017339382.1\|5388004_5389438_-\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|226906

Protein	Function_ID	Function_description	E-value
NZ_CP010945.1\|WP_017339378.1\|5384814_5385750_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293805	cd07719, arylsulfatase_AtsA-like_MBL-fold, Pseudoalteromonas carrageenovora arylsulfatase AtsA and related proteins; MBL-fold metallo-hydrolase domain. Arylsulfatase (also known as aryl-sulfate sulfohydrolase, EC 3.1.6.1). Pseudoalteromonas carrageenovora arylsulfatase AtsA may function as a glycosulfohydrolase involved with desulfation of sulfated polysaccharides, which catalyzes hydrolysis of the arylsulfate ester bond, producing the aryl compounds and inorganic sulfate. CD also includes some sequences annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily.	5.59574e-41
NZ_CP010945.1\|WP_080995152.1\|5390420_5391458_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.00102e-14
NZ_CP010945.1\|WP_017339371.1\|5378071_5378446_+\|DUF2784-domain-containing-protein	gnl\|CDD\|378502	pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is a family of uncharacterized protein. The function is not known however it is conserved in Bacteria.	2.61575e-37
NZ_CP010945.1\|WP_017339375.1\|5381794_5383168_+\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	4.8021e-82
NZ_CP010945.1\|WP_017339384.1\|5389862_5390426_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.88585e-17
NZ_CP010945.1\|WP_162491063.1\|5384618_5384801_+\|hypothetical-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	0.000258435
NZ_CP010945.1\|WP_017339387.1\|5392524_5395443_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP010945.1\|WP_017339374.1\|5381054_5381582_-\|DUF3087-domain-containing-protein	gnl\|CDD\|378624	pfam11286, DUF3087, Protein of unknown function (DUF3087). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	3.13355e-72
NZ_CP010945.1\|WP_017339373.1\|5379398_5380976_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.50426e-56
NZ_CP010945.1\|WP_017339388.1\|5395783_5397469_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP010945.1\|WP_017339377.1\|5383881_5384622_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.05142e-75
NZ_CP010945.1\|WP_017339389.1\|5397465_5397954_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	2.63696e-61
NZ_CP010945.1\|WP_003202835.1\|5395442_5395787_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	7.18454e-72
NZ_CP010945.1\|WP_017339372.1\|5378470_5379388_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.72999e-71
NZ_CP010945.1\|WP_017339376.1\|5383322_5383586_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	9.44911e-13
NZ_CP010945.1\|WP_017339380.1\|5386521_5387256_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	3.9406e-14
NZ_CP010945.1\|WP_017339370.1\|5377198_5377897_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.89603e-56
NZ_CP010945.1\|WP_017339382.1\|5388004_5389438_-\|FAD/NAD(P)-binding-protein	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	4.32756e-85

>NZ_CP010945.1|WP_017339378.1|5384814_5385750_+|MBL-fold-metallo-hydrolase
MISLSDLLRFCAALLLAATLCVSLDTSGAMAAEPGVAPLELVVLGSGGPGAGGRAGAGYVLLVDGTPRILLDAGPGTFVRLGEAKLDIRRLDIVLLTHLHVDHVAELPGIVKARAVASRSDITFTVFGPGAAQPYPSTRHYIDLMFGKDGAFSYVQDFAGTVSFNTTDLDHLTAPKTLLSQDGLVISAVTGHHRDAPAVIYRVDYRGKSITFSGDIDAQGHAALTHIARGSDLLVFNAPVLDPPDAPPALYNLHTAPGDIGKISAAAQVSSLLLSHLSRDIDESRDAVTQSIHRAYQGPVQFAEDGLHIRP
>NZ_CP010945.1|WP_162491063.1|5384618_5384801_+|hypothetical-protein
MKLALPWPPTPMRCAWTKKGPTEVAHAAKVFNAMQTRIATYLNERMQPLAAISHDLQTPI
>NZ_CP010945.1|WP_017339377.1|5383881_5384622_+|response-regulator
MEHVNHILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLETNQVDLIVLDIMMPGDDGLLLCRELRSGKHKATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRRTRMLPPNLLITESGRLLGFGRWRLDTTARHLLDEDGTMVALSGAEYRLLRVFLDHPQRVLSRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLMDDSRESTYIKTVRSEGYVFSYPVELLGAES
>NZ_CP010945.1|WP_017339376.1|5383322_5383586_-|DUF2790-domain-containing-protein
MNRNKLVAASFLAVLNVAAFSAYADVQSPSQTHAAGTHLDIKKVISTVENDGSQCGIVNARMTYLDSSGTQKVLDYSKFAECGNQGG
>NZ_CP010945.1|WP_017339375.1|5381794_5383168_+|LOG-family-protein
MSQRQVINASVSPKGSLETLSQREVQQLSEAGSGSTYTLFRQCALAILNTGAHVDNAKTILEAYKDFEIRIHQQDRGVRLELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDAQRIDLSTSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHSINTEEYKYTKKVGHELGLRSLDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDIEKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNKGLPFPVILTGPKHAAPYLEQLDAFVGATLGEAAKQHYEIIIDDPAEVARQMTAGLKAVKQFRRERNDAFHFNWLLKIDEGFQRPFDPTHENMANLKLSRSLPAHELAANLRRAFSGIVAGNVKDKGIRLIEEHGPYQIRGDAAVMQPLDQLLKAFVAQHRMKLPGGAAYVPCYRVVA
>NZ_CP010945.1|WP_017339374.1|5381054_5381582_-|DUF3087-domain-containing-protein
MFEIQPQNPEIYRSQTRRSTIIIAVVFLALAMVLSTAAVAMFGEPGGDNLRFNVGGVFVAVLLMVALMRGTFWHQAWMAPAVYGWQLKRSLMSITNVMHQVTAAVEKDDPGAMKLLRFYHLGLSQMHELDGNSSDHSQLIREMDLHKARMEALGIETDQTQLNPAWLEALKQTPR
>NZ_CP010945.1|WP_017339373.1|5379398_5380976_-|GGDEF-domain-containing-protein
MGNPSVKDRIEQSRHSVSLVTEQAGAKLKVRSAVVLLLAVCLSMIAIVIWEAWNSRQYHLHDKGVAMSNLAQTLASQAQATIKQADTLLFTLVERLENDGFEPALLPHLERLLSAQRSELSQLHGLFVYDEKGRWVANSNGAVLPDASNADREYFIYHRDHPDRGPHIGPSIKSRSSGEWIMTVSRRINHADGRFAGVALATIYLSHFLSLYDSIDMGRNGVINLIADDASIVVRRPFKDAEVGTSLASSPLFKQLLPMANSGTSTVKSMLDGVVRVVGFRRVEGYPLIVFAALDRDEVLAGWREESLLSAGIVALLLVFLGVLGYRLINLMKQQNRIQSQLLDAQETLIEVNRSLELLALEDALTGLSNRRQFDLFIHSEIGRAKRSLTGLALLMLDVDHFKLFNDHYGHLAGDECLRNISAIITENIQRPGDLAARYGGEEFAVVLPGTDYVGAFLVAEKIRRAVLHAGIRHSEGAEGMVTVSLGVAAYDPTSQAQADDLIGAADKALYVAKASGRNMSVIAN
>NZ_CP010945.1|WP_017339372.1|5378470_5379388_+|LysR-family-transcriptional-regulator
MLSIEDLALLQAIRETGSLSRAAAHLGKAPSTVSYAARQLEERFDALLFDRRRYRLQLTPAGELLVNEAARLMQDVSRLTQRVQQVANGWESRLWIVTDELLEFEALIPVIHEFDALQSGVPLRITQEVLKGVWEALREGRADLIIGATNEPPAIPSLRWMQLGEMEWVFAVSPRHPLAKVKEPISRTTVTQHRAIVVADSSRATEGSTYGVSGGQPVLAVPTMRAKILAQCDGLGVGWLPRHRVGSLLKNGTLVEKQMADPREPNILYAGWRGDHDGRALGWWLEKLKQSYLATRLVQGSDRFV
>NZ_CP010945.1|WP_017339371.1|5378071_5378446_+|DUF2784-domain-containing-protein
MLYRIAADGLVLFHLLFILFVLFGGLLVLRWHHLLWLHLPAAAWGVCVEFFHLFCPLTDWENRMRQAAGQTGYGGGFIEHYVWPVIYPAGLTPAIQLGLGSVVLALNVLVYLRLFRLRKLRRAA
>NZ_CP010945.1|WP_017339370.1|5377198_5377897_-|AzlC-family-ABC-transporter-permease
MSNSLVPRSAFLRGAAAIMPLSLATAPWGLLAGSMAIEANLTPLQGQGLSSIVFAGAAQLVAIGMLKGGAGIFSILLTTLLLTSQHLLYGMSMRSVISPLPGRWRAGLGFLLTDELFALTSQHDKQQFNRWYALGVGLTFYIAWNLFTLAGIVLGSSIPGLEHLGLDFSIAATFIALITPVVRNVPTVVCVAVSLFCSVLFSYWQWGSALVLSGLAGMTAGFVCNKFYGGRT
>NZ_CP010945.1|WP_017339380.1|5386521_5387256_+|transporter-substrate-binding-domain-containing-protein
MKRLAGCLLSFLTFTAVAADLNMLTDNHPPLHFQQGNAMVGFGVDVVQALADTAGDQVHFQQVPLLRALRVASTEPATGVFTVLRTAERDSQYQWVGPLMEVETALFSTDSNRQRVRSLLEASRQGRIAVPRKWLVYGYLQKQDLSNLYGVETPEQMMRLARLGRTEFVVADTLSVTRMAREEGVPPEQLHYQIPLMKQATYIAFSPQTDARQIARWQQTLDEMSRDGRLEKLKQRWLVDRTPR
>NZ_CP010945.1|WP_017339381.1|5387364_5387592_+|hypothetical-protein
MKSIIGLGFALSVLGATSAIAAPHATLPVVAAAAKVSQPATLNVNTVGVDQKDSQASTLYVAENRPEFGSKYQRY
>NZ_CP010945.1|WP_017339382.1|5388004_5389438_-|FAD/NAD(P)-binding-protein
MTETRSGQTTDVIRHADILIIGGGLSGAMLAAQLLRLPGKRSLLVIEPRAELGRGEAYSAVELGHTLNGNAARMSVDPDNADDLTQWLTEYIVAGGWPESDEQHVPVSELFPPRGIFGLYVQQRLAEAQAVGALNGSTVEHVRAEVVDLQALDDSVRLSLSDGQRLQGGYAVLATGMFPAARTPQTESSGLNAAALDPWDVAAMRQLDPQSTVLIIGSGLTMVDAVVSLEQAGHRGPIEVFSRHGLLPHVRRQPPAWADFLAEDHSIRTPRQLVRELRRHCRDAIAQGIDWQAPLDTVRAHIGRLWHQATDVQRRQFVRHVRPWWESHHHRSPPLSAELVARLHGEGRLRIQAASYKGLEPSSCDQVSIRIRRRGEAETVVVSGAALINSSGIEYDWRRVARPLPQQLLARGLVRPGPLALGIAATVDGAVLGGDGRVVGRLFAMGPPLRGMWWESTAVTDVASQAKALALRLAGSR
>NZ_CP010945.1|WP_017339384.1|5389862_5390426_-|helix-turn-helix-transcriptional-regulator
MHKDSTQRASVLQHVSLNVRRLRHAADMSQTALAAKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALDVAFSDLIQAPDARDPSRINEVAWAGTIPGSKAVLLSKATATREVEQWEWCLQPGEIYPSQPDADGWSEQIYVFEGCLTLMLGDTPHNISAGEFYMFASNQPHAYRNDGPVAARFVRNVVI
>NZ_CP010945.1|WP_080995152.1|5390420_5391458_+|DMT-family-transporter
MHYIAHSMGLGSILRNIRRIVRRPQVARKVMTSLNSSPASSRFSRFSKAECVLVLITMVWGGTFLLVQHAMTVSGPMFFVGLRFAAAAIIVSLFSWRHLRELTLFELKAGAFIGVAIMLGYGLQTVGLQSIPSSQSAFITALYVPFVPLLQWLVLGRRPGLMPSIGIMLAFTGLMLLSGPAGASFNFSPGEIATSISAIAIAAEIILISTYAGQVDVRRVTVVQLATTSVLAFLMVVPTQEVIPDFSWFLLCSALGLGAASAAIQVAMNWAQKSVSPTRATLIYAGEPVWAGIVGRIAGERLPAIALLGAGLIVAAVIVSELKTKGKDREAIEGELESEPVDSNK
>NZ_CP010945.1|WP_017339386.1|5392058_5392244_+|hypothetical-protein
MNKSIFIENAGNDCAVRQREFIRLVGNRLFPVIEQLKLDKRLFLQKFAKNTAGTAGAGITD
>NZ_CP010945.1|WP_017339387.1|5392524_5395443_+|monovalent-cation/H+-antiporter-subunit-A
MSLIVLLLLPFIGSCVAALLPHNARNTESLLAGLVALIGTIQVALLYPQIAHGGVIREEFFWLPSLGLNFVLRMDGFAWLFSMLVLGIGTLVSLYARYYMSPDDPVPRFFAFFLAFMGAMLGLVISGNLIQIVFFWELTSLFSFLLIGYWHHRADARRGAYMALMVTGAGGLCLLAGVMLLGHVVGSYDLDKVLAAGDLIRAHALYPILLPLILIGALSKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPSLSGSEEWFYIVSGAGACTLLLGAYCAMFQNDLKGLLAYSTISHLGLITLLLGLNSPLAAVAAVFHILNHATFKASLFMAAGIIDHESGTRDIRKLSGLIKLIPFTATLAMVASASMAGVPLLNGFLSKEMFFAETVFINATAWVEMTLPIVATIAGTFSVAYSLRFTVDVFFGPTATDLPHTPHEPPRWMRAPVELLVFTCLIVGIFPAQVVGSLLAAAALPVVGGTLPEYSLAIWHGWNAPMIMSLIAMSGGIVLYLLLRNQLKRGRFKYPPIIGLFNGKRLFERSLVIMMRLARRLERRISTKRLQTQLFLMVLAAVLAGLIPMLHSSLSWGDRPKIPGSIVFVTLWLLAIACALGAAWQAKYHRLAALTMVSVCGLMTCITFVWFSAPDLALTQLVVEVVTTVLILLGLRWLPRRIEEVSPLPSTLRKARIRRLRDLLLSIAVGGGMALLSYAMLTRQTPNDISSFYLSRALPEGGGSNVVNVMLVDFRGFDTLGEITVLVAVALTVFALLRRFRPPKESLQLPAQQRLLAPDVVTDLVNPRHASDTALGFMMVPAVLVRLLLPIAFVVSIYLFMRGHNQPGGGFVAGLVMSVAFILQYMVAGTQWVEAQMSLRPLRWMGTGLLFATVTGLGAMAVGYPFLTTHTWHFELPLLGDIHIASALFFDIGVYSVVVGSTLLILTALAHQSVRGHKTAALPRSVATKGAV
>NZ_CP010945.1|WP_003202835.1|5395442_5395787_+|Na+/H+-antiporter-subunit-C
MEEVIAIAIGVLAASGVWLVLRPRTFQVVMGLCLLSYGVNLFIFSMGSLFIGKEPIIKDGVPQDLLHYTDPLPQALVLTAIVISFAMTALFLVVLLASRGLTGTDHVDGREPKE
>NZ_CP010945.1|WP_017339388.1|5395783_5397469_+|monovalent-cation/H+-antiporter-subunit-D
MNAMTHLIAAPILLPLLTAAVMLMLGEKHRPLKAKINLFSSLLGLGISVLLLQWTQTTGVPGSIGVYLPGNWQAPFGIVLVVDRLSALMLVLTGIIGVSALLFAMARWDGAGSSFHALFQIQMMGLYGAFLTADLFNLFVFFEVLLAASYGLMLHGSGRARVSSGLHYISINLLASSLFLIGAALIYGVTGTLNMADLALKIPLVPEADRGLLHAGAAILAVAFLAKAGMWPLNFWLVPAYSSASAPVAAMFAIMTKVGVYTLLRLWTLLFSGQAGASAYFGGDWLIYGGMATIVCAAVAILAAQRLERMASLSILVSAGILLSAIGFAQPNLIGAALFYLVSSTLALSALFLLAELIERSRSANEMPLFDDGDLIARPLESLQPPKGINLDDEQKAVVGQVIPWTMAFLGLSFIACALLIIGMPPLSGFIGKLGLLSALLNPLGLGNGTDEPVSNAAWGLLALLILSGLASLIAFSRLGIQRFWTPEERPSPLLRRFECVPIIALLGLSILLTFKAEPLLRYTQAAAQTLNNPQQYVMAVLGTRAVPSPEAKGAVAEVQP
>NZ_CP010945.1|WP_017339389.1|5397465_5397954_+|Na+/H+-antiporter-subunit-E
MKRLFPAPWLSLALWLLWLLLNLSMSPGNLLLGAVLGFCAPLMMRKLRPLPIRIRRPGVILRLFFIVGRDVLVSNLAVAWSVLNAARRPPRSRFIKVPMDLRDANGLAALAMICTVVPGTVWSELALDRSILLLHVFDLDDEALFIQHFKATYERPLMEIFE

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Crispr_ID: NZ_CP010945_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010945_2

6367341-6367435

Orphan

Consensus_repeat	Method
TCGGCTGTCAGGCCGCCATCGCTGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010945_2

>merge|NZ_CP010945|2|6367341-6367435|CRISPRCasFinder
TCGGCTGTCAGGCCGCCATCGCTGGCAGGCCAGCTCCCACAGGGTCGAGGACACCCACGAAAATCAGGTCGGCTGTCAGGCCGCCTTCGCTGGCA

>NZ_CP010945|2|2|6367341-6367435|CRISPRCasFinder
TCGGCTGTCAGGCCGCCATCGCTGGCA	GGCCAGCTCCCACAGGGTCGAGGACACCCACGAAAATCAGG
TCGGCTGTCAGGCCGCCTTCGCTGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010945.1\|WP_017340149.1\|6375902_6376952_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP010945.1\|WP_017340139.1\|6364163_6364934_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP010945.1\|WP_017340142.1\|6366499_6367258_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010945.1\|WP_017340140.1\|6364935_6365577_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP010945.1\|WP_017340144.1\|6369895_6371278_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP010945.1\|WP_017340150.1\|6377090_6377735_+\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|320075
NZ_CP010945.1\|WP_017340135.1\|6359344_6361792_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_CP010945.1\|WP_017340133.1\|6357773_6358397_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198289
NZ_CP010945.1\|WP_017340138.1\|6363445_6364072_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178546
NZ_CP010945.1\|WP_008029289.1\|6374152_6374851_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP010945.1\|WP_017340134.1\|6358440_6359100_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP010945.1\|WP_017340132.1\|6356707_6357640_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP010945.1\|WP_017340143.1\|6367822_6369787_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP010945.1\|WP_017340151.1\|6377887_6378943_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|182881
NZ_CP010945.1\|WP_017340136.1\|6361866_6362274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010945.1\|WP_017340137.1\|6362355_6363354_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP010945.1\|WP_017340146.1\|6373008_6374013_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP010945.1\|WP_017340148.1\|6375144_6375903_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP010945.1\|WP_017340152.1\|6379012_6379819_-\|DUF4892-domain-containing-protein	unknown	unknown	gnl\|CDD\|374449
NZ_CP010945.1\|WP_017340145.1\|6372010_6372772_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440

Protein	Function_ID	Function_description	E-value
NZ_CP010945.1\|WP_017340149.1\|6375902_6376952_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.00635e-45
NZ_CP010945.1\|WP_017340139.1\|6364163_6364934_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	8.57539e-09
NZ_CP010945.1\|WP_017340140.1\|6364935_6365577_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.70969e-38
NZ_CP010945.1\|WP_017340144.1\|6369895_6371278_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.20186e-104
NZ_CP010945.1\|WP_017340150.1\|6377090_6377735_+\|EF-hand-domain-containing-protein	gnl\|CDD\|320075	cd15902, EFh_HEF, EF-hand, calcium binding motif, found in the hexa-EF hand proteins family. The hexa-EF hand proteins family, also named the calbindin sub-family, contains a group of six EF-hand Ca2+-binding proteins, including calretinin (CR, also termed 29 kDa calbindin), calbindin D28K (CB, also termed vitamin D-dependent calcium-binding protein, avian-type), and secretagogin (SCGN). CR is a cytosolic hexa-EF-hand calcium-binding protein predominantly expressed in a variety of normal and tumorigenic t-specific neurons of the central and peripheral nervous system. It is a multifunctional protein implicated in many biological processes, including cell proliferation, differentiation, and cell death. CB is highly expressed in brain tissue. It is a strong calcium-binding and buffering protein responsible for preventing a neuronal death as well as maintaining and controlling calcium homeostasis. SCGN is a six EF-hand calcium-binding protein expressed in neuroendocrine, pancreatic endocrine and retinal cells. It plays a crucial role in cell apoptosis, receptor signaling and differentiation. It is also involved in vesicle secretion through binding to various proteins, including interacts with SNAP25, SNAP23, DOC2alpha, ARFGAP2, rootletin, KIF5B, beta-tubulin, DDAH-2, ATP-synthase and myeloid leukemia factor 2. SCGN functions as a Ca2+ sensor/coincidence detector modulating vesicular exocytosis of neurotransmitters, neuropeptides or hormones. Although the family members share a significant amount of secondary sequence homology, they display altered structural and biochemical characteristics, and operate in distinct fashions. CB contains six EF-hand motifs in a single globular domain, where EF-hands 1, 3, 4, 5 bind four calcium ions. CR contains six EF-hand motifs within two independent domains, CR I-II and CR III-VI. They harbor two and four EF-hand motifs, respectively. The first 5 EF-hand motifs are capable of binding calcium ions, while the EF-hand 6 is inactive. SCGN consists of the three globular domains each of which contains a pair of EF-hand motifs. Human SCGN simultaneously binds four calcium ions through its EF-hands 3, 4, 5 and 6 in one high affinity and three low affinity calcium-binding sites. In contrast, SCGNs in other lower eukaryotes, such as D. rerio, X. laevis, M. domestica, G. gallus, O. anatinus, are fully competent in terms of six calcium-binding.	1.20667e-08
NZ_CP010945.1\|WP_017340135.1\|6359344_6361792_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP010945.1\|WP_017340133.1\|6357773_6358397_-\|glutathione-S-transferase	gnl\|CDD\|198289	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	4.44502e-54
NZ_CP010945.1\|WP_017340138.1\|6363445_6364072_+\|hypothetical-protein	gnl\|CDD\|178546	PLN02961, PLN02961, alanine-tRNA ligase.	1.65763e-22
NZ_CP010945.1\|WP_008029289.1\|6374152_6374851_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	1.09144e-129
NZ_CP010945.1\|WP_017340134.1\|6358440_6359100_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	4.4855e-20
NZ_CP010945.1\|WP_017340132.1\|6356707_6357640_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.32701e-106
NZ_CP010945.1\|WP_017340143.1\|6367822_6369787_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.76906e-64
NZ_CP010945.1\|WP_017340151.1\|6377887_6378943_-\|AI-2E-family-transporter	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	5.88186e-62
NZ_CP010945.1\|WP_017340137.1\|6362355_6363354_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.80869e-74
NZ_CP010945.1\|WP_017340146.1\|6373008_6374013_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP010945.1\|WP_017340148.1\|6375144_6375903_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.97562e-75
NZ_CP010945.1\|WP_017340152.1\|6379012_6379819_-\|DUF4892-domain-containing-protein	gnl\|CDD\|374449	pfam16234, DUF4892, Domain of unknown function (DUF4892). This family consists of uncharacterized proteins around 270 residues in length and is mainly found in various Pseudomonas aeruginosa species. The function of this family is unknown.	3.53343e-109
NZ_CP010945.1\|WP_017340145.1\|6372010_6372772_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.54381e-159

>NZ_CP010945.1|WP_017340142.1|6366499_6367258_+|hypothetical-protein
MITLLVVAGIALLIAIGYMNHVVENNKLERARTKVELNDRLRRCGEITETFPGQLMTPALKLLLTRLELNVCQRLLNLEKSSANLKVRISELTTLVAQGESIPVNNPPAPIQTEAKAKDVRFLLEALHGQITRAAQDGFLPTNEAKRWIREVRHILVLLHIEFFNNLGQHSLQQNQPGQARLAFERGVQYLRKQQEPQIYAEQLEYLEKLLARANAQVMDNIAPVEGEVNQLTEGLKDVEADADWKKKVIYD
>NZ_CP010945.1|WP_017340140.1|6364935_6365577_+|LysE-family-translocator
MQYSNYLGEFLALATIHFLAVVAPGPDFAVTIRQSVRFGRGVGICTALGIGAGISVHVLYTLLGVGALMHTTPWLLTVAKIVGGAYILYLGVSLLRSQPKSVLEGEKEADEPMVEQTLLKAFTTGFLTNATNPKATLFFLAIFTTLISATTPLNIQALYGVWMCFVNALWFVIVALFFSSVRVRVLFMRMGHWFERTMGVILILFAGRLILSM
>NZ_CP010945.1|WP_017340139.1|6364163_6364934_+|2OG-Fe(II)-oxygenase
MMLDVERLDETCIKKLANEEVLAIRVKGFLAPPLAIQIGDKILAPGFEGYINAPSIGRIGMAFYEAENQPLLIEDYFERATRNIAELRNRCAPYSSPVDTLRCMLDESWPAGAHLENLYGRKMYVGLSRVVKPGVCFLAHHDIFAKDAPDSFQAKSLEAQFACNVYLNMPTEGGALQMWNHDISPDQFDEMRGDSYGIDPALLGTPALEVCPEPGDFIMFNSRCMHSVTPGVADPRLSLSFFVGYRGNASPLTFWS
>NZ_CP010945.1|WP_017340138.1|6363445_6364072_+|hypothetical-protein
MTLRLFFHSDDLKANVEVLECTPHENEFAVELRATLFHPQGGGQPFDTGWIGDSQVLRVVQDPDRIIHFVDRPAPIGMIQIRVDEPRRQFNTRMHSAGHLIGHFVQAMGWMPIKAHHWPGEGRVQFKPTDSAQEVDAQTVGFGIEQWIAHDLPRLTSLREGAREIGFGELPAYGCGGTHVRSLKDLGTVTIASVSQKKGTLSVHYSVD
>NZ_CP010945.1|WP_017340137.1|6362355_6363354_-|LysR-family-transcriptional-regulator
MSTNLPLPLLGEMAIFVKVVETGSFSEAARQLGSSPSAVSRSISRLEKALATRLLQRTTRKLRLSDGGEEVFKRCQEMVSAAKSVMEISGQFTHEAEGLVRVSVPKAVGRFVIHPHMPEFLRRYPKVDVELLLEDRQVDLIDDNVDLAIRITDRPPAGLVGRQLLTIDHLLCATPQYLAEHGTPTHPHDLLNHSCIYLGETPSDARWKFKKGTKAVTVGVRGRYAANHTGVRLGAVLQHIGIGSLPYFTARYALEQGLIVQVLPDWTFLASYHGGAWLLHSPTRYLPPKLRVLIDYLVECLEKEPTLSKPGKPGALGKVAAEYELPESDGLL
>NZ_CP010945.1|WP_017340136.1|6361866_6362274_+|hypothetical-protein
MSNVVADHLVLLDHLRSILVAVGEAEQVPEESHALFLERFDELRALLPVDPIESQYLGQDILCQVITRYPQIAHLVPRDLLWYFAGDCLHYMPDDEIDLYQALEERRFEAEQNDEPFDWNQEKQLLAMSNNDSKH
>NZ_CP010945.1|WP_017340135.1|6359344_6361792_+|acyl-CoA-dehydrogenase
MLLLWILVLVVGIAYLAHRRIAPLPALCIVAVYMVAMGAFSRAPGWLLLVLWVLIAAVAVPLLLPDLRRKYFSAPLFSWFEKTLPPMSETERDAIDAGTVWWDGELFSGRPDWDKLLSYPKAQLTEEEQAFIDGPTDELCAMVSDWQIGQDMDLPAEAWAHIKENGFFALIIPKEYGGKGFSAYAHSQVAMKLATRSGDLASTVMVPNSLGPAELLLHYGTDEQRNHYLPRLARGDDIPCFALTGPLAGSDAGSMPDTGVICKGEWEGKETLGLRLNWEKRYITLGPVATLLGLAFKAYDPDHLLGDEEDLGISLALVPTDTAGVEIGRRHLPLGAAFMNGPNSGKDVFIPLDFLIGGQEMLGKGWMMLMNCLSIGRSISLPAVGTGAAKFTSLVTGQYAQIREQFNVPLSAFEGIQEAMARIGGNAWMMDAARMLTANAVDLGEKPSVLSAILKYHLTERGRECISHAMDVHGGKAIIMGPNNYLGRSWNGAPIFITVEGANILSRNLMIFGQGAIRCHPFVLKEMALAGREDKDQALIEFDGLLLQHIGFAVSNAASTLVLNLGFGHFEHAPGDKLSQGYFRALNRQAAAFAMLADLSMMLLGGELKRRERLSARLGDVLSNLYLASAALKRYHDLDSPGHMAPLFTWAMEESLGQSERALDELLTNFPNKVLGCLLRVIVFPFGRRHKGPSDKLGAEVAAVIGRAKGDPTLEELLGGCFRPQSADDAVGALQHACDLLDAAQAVQKKLHVALKSGQVKPVAGENVIDAALEAGVLQPVEAQKLREAEVARRKVIDVDDFDKEELTLAAGKVR
>NZ_CP010945.1|WP_017340134.1|6358440_6359100_-|transglutaminase-family-protein
MHEYLRPGRFIDSDHLSVVEFAEKHRGSHRDPLEQAINLYYAVREAVRYNPYTFSRDPDTLRGSYALEAGESYCVPKATLLAGAARHCGIPARIGLADVRNHLSTPRLLELLKSDVFAMHGYTELYLNDRWVKATPAFNQKLCELFNVAPLEFDGINDSVFHPFNRDGEQLMEYLIDHGQFTDVPETFFFEHLEKCYPHLFSEQLPPLLGDMQSDLSRA
>NZ_CP010945.1|WP_017340133.1|6357773_6358397_-|glutathione-S-transferase
MLKIWGRKNSSNVRKPLWAAEELGLAYEAIDAGGAFGVVDTPEYRAMNPNGRVPVIEDDGFVLWESNAIVRYLMALHASGTAWYPENLQARATADKWMDWTTSSFSGPFRTVFWGVLRTPEDQQDWPSINAAIKECEGLLAMADQALAAKPYLSGDEIGMGDIPLGSFIYAWFEMPIERASQPHLEAWYARLKQRPAYRKAVMTALT
>NZ_CP010945.1|WP_017340132.1|6356707_6357640_-|ABC-transporter-ATP-binding-protein
MSSALSIRQLTKTYGNGFQALSGIDLDVAEGDFFALLGPNGAGKSTTIGILSTLVNKTSGTVNVFGHDLDKEPAALKRCIGVVPQEFNFNQFEKTFDIVVTQAGYYGIPPKIAKERAEQYLTQLGLWDKRDVPSRSLSGGMKRRLMIARALVHEPRLLILDEPTAGVDIELRRSMWTFLTELNQKGITIILTTHYLEEAEQLCRNIGIIDHGTIVENTSMKQLLGQLHVETFLLDTKNTLSVAPQLLGYPTRLLDAHTLEVQVDKSMGITALFTQLAQQNIEVLSLRNKTNRLEELFVSLVEKNLSKVAV
>NZ_CP010945.1|WP_017340143.1|6367822_6369787_-|methyl-accepting-chemotaxis-protein
MISAVQGRFANLGMAKKLGVGFVLVLLLTALVAAIGVWSLQTISHRFDGLKQMSSLNSGLLKVRLLEQEYALHGNPKIVTALHEGVDGLVVLANQLKAQSPANVPVMSDVEQSLGAYRKAFDEFVSLSQAKDLALEMASWSVSSVANNLDVLQAGLADDGAYALKESEGKDGSQFIEQANQVSQVSRLMLQAMNEARVRLDQSRKGDDSAGQGKIEQADQALTQAEQLKTTVKDEGYLTVLNEVVGHIGGFSEKLAEYTGLLAQEKTVYEQLHQRAAQVVERVDQAYVAEDQSMQAELKKNSLLIIGSSALALLVGLIAAWVITRLIVGPLRSVIRVAQQIAAGDLSATVEVTRRDEIGQLMQAMQQMGAGLSSIVSGLQAGIEQLASSAQSLSAVTEQTNLEVSSQKEETEQVATAMNQMTATVHDVARNAEEAAQAAQTADGKVESGQAVVRQSMARIEQLADSASSASSSIESLSAEIQNIGTVLSVIKSVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTQQSTEEIERLVSALRSAAQSSVHQIQSSGELVKLAVSDALQTESALGSIAAAVSLIQQMNQQIAAAAEEQSSVAEEINRSVTSIRASADQSSLAMQGNAASSIELAQLGVELKGMVGHFRL
>NZ_CP010945.1|WP_017340144.1|6369895_6371278_-|PLP-dependent-aminotransferase-family-protein
MELRIDRQALVPVVQQVVDALACWLRQSDIEPGTRLPSARQIARTNLLSLSSVVEACERLVAQGVLASRHGAGFIVAAPTLAAADSPWFEGAELQPFNAAGGLNLGGGGLPESWRETDDLTYAIREVSRTDMAGLFNYSSPLGLLALRQQIIKRLSPLDIDAEENRIMTTAGASQGLDLIVRTLLKPGDCVVVESPGYSLLFELLRLHGVSMIEVPRTPRGPDIEVLESLLLEKKPRALFINSFYHNPTGSNLTPVVAQRILHLAKNHGVLVIEDDVYADLHSGPGTRLAALDTDDNVIYVGSFSKTLSSSLRVGFVVAGAEVISRLAEVKRISSLGASGFCESVLARLLASGAYRKLVLRLRQRLRHDREAALQVLEDAEWEVFGKPVGGLFIWARSRKSDYAHVRIQARRFGVLLSSTTAFSPASEASDWQRINVACACDPRARAFFQATAPDRPQAF
>NZ_CP010945.1|WP_017340145.1|6372010_6372772_-|SDR-family-oxidoreductase
MSMTFSGQVAVVTGAANGIGRATAQAFAAEGLKVVVADMDTAGGEGTVALIRTAGGEATFVRCNVTVESDVKNLMDEVVRSYGRLDYAFNNAGIEIEKGKLAEGTVDEFDAIMGVNVKGVWLCMKYQLPLLLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKKIRVNAVCPAVIDTDMFRRAYEADPKKGEFASAMHPVGRIGKVEEIASAVLYLCSDGAAFTTGHSLAVDGGVTAF
>NZ_CP010945.1|WP_017340146.1|6373008_6374013_+|NADP-dependent-oxidoreductase
MTTQTNRQFLLAKRPVGAATRETFTYQEVPVGEPAAGQILVKNEYLSLDPAMRGWMNEGKSYIPPVGIGEVMRALGVGKVVASNNPGFAVGDYVNGALGVQDYFLGEPRGFYKVDPKLAPLPVYLSALGMTGMTAYFALLDVGAPKEGDTVVLSGAAGAVGSIAGQIAKIKGCRVIGIAGGADKCKFLIDELGFDGAIDYKNEDVVAGLKRECPKGVDVYFDNVGGDILDAVLSRLNMKARVVICGAISQYNNKEAVKGPANYLSLLVNRARMEGFVVMDYAAQFAAAGQEMAGWMAKGQLKSKEDIVEGLETFPETLMKLFSGENFGKLVLKV
>NZ_CP010945.1|WP_008029289.1|6374152_6374851_-|orotidine-5'-phosphate-decarboxylase
MSVCQTPIIVALDFPTRDAALKLADQLDPKLCRVKVGKELFTSCASEIVGTLRDKGFEVFLDLKFHDIPNTTAMAVKAAAEMGVWMVNVHCSGGLRMMAACREVLDQRSGPKPLLIGVTVLTSMEREDLAGIGLDIEPQEQVLRLAALAEKAGMDGLVCSALEAQALKSAHPSLQLVTPGIRPAGSAQDDQRRILTPRQALDAGSDYLVIGRPISQAADPAKALADVVAEIA
>NZ_CP010945.1|WP_017340148.1|6375144_6375903_+|response-regulator
MHSTQAPLNDDQKAPGDDKRWSIRALIVDDDVPIRELMIDYLARFNIHASGVTDGAAMRLALQAEHFDVVVLDLMLPGEDGLSLCRWLRAESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDDRTEQRANVRFDNWRLNSVLRQLIAADGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKAPQLIKTVRGEGYLFDARDIG
>NZ_CP010945.1|WP_017340149.1|6375902_6376952_+|HAMP-domain-containing-histidine-kinase
MRARFDTLFGRLFGVLLVAIILAHLLAFAWFHHYGPPPPPPPPEFSQGLDGQRPPMDPRFDKRPPRPWFGGPLVPLTFQLISLIIAAWYGAKLLSRPIQRLSDAAERLSENLDSPPLDESGPRESRQAAYTFNLMQKRIIEQMQQRSRMLGAVSHDLRTPLSRLKLRLEQIDDNKLQGQMRQDLDDMISMLDATLTYLHEQRTSEAPQWMDVQALVESLSENAQDQGSDVQANGHCAPLQVQPMALRSCINNLLDNALRYAGQAQITLEDHREHLVIRVIDHGPGIAADKREAVFEPFFRLEGSRNRNSGGVGLGMTIAREAAERLGGQLTLEETRGGGLTAVIRLPRT
>NZ_CP010945.1|WP_017340150.1|6377090_6377735_+|EF-hand-domain-containing-protein
MIGSVSNYTSYNSTASTTTSSARSQQFQKELLAKLDTNSDGSVDQDELKSALSEKSDDGLLVSLSKNFADLDSDDSGSLSNEEIAAMAPPPPPPRDQAPATELADALVSALDADGDGAISGDELSSALQASDSTSSTSTDTSAALFKVLDSDSSGGVSSDELNAALQAGREKNGDSSTDQANVTEALNKMIANLSKQYSLDKVATVGKYLNVAT
>NZ_CP010945.1|WP_017340151.1|6377887_6378943_-|AI-2E-family-transporter
MINNDRLLVQILLLVLFGASLWVMAPFWSAMFWGAVLAFASWPLMRLLTHWLKGRESLAAALLTLGWMLVVALPLVWLGFNLADHVRDATAFIKDVQMDGLPEAPTWLGSIPLVGERLVAIWNSIDQQGAAMMVALKPYLGQVGNWLLARSAQIGGGILELTLSIVFVFFFYRDGPRLAAFVHSLLQRLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFMLSLIPMGPPLVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLTDWSKSQARVEDRRP
>NZ_CP010945.1|WP_017340152.1|6379012_6379819_-|DUF4892-domain-containing-protein
MRSISLLALCCFSPLVFAADVPGSQDLPIVPRVTDSQIVDYRPAVELERIYPLGSIRKISGQLRFDGQVSARGQTTSVTYELPPEHSSIEAFTIAREALQKQDAQLLFWCQARDCGESSLWANEVFGNAKLYGADDQQAYLLLRLAAPKDNTLVALYSITRGNRKAYLHVEQFDAAAPLGDLLPTSATLLRELKSTGELDFPKLTDAPDETWLRLLSRGLNLDTTLRVSVSGPNAEAWRQALMSQGVRSARMETGSVEGSGLHIELLR

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Crispr_ID: NZ_CP010945_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010945_3

6570212-6570299

Orphan

Consensus_repeat	Method
TCACAAAACCTGTGGGAGCCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010945_3

>merge|NZ_CP010945|3|6570212-6570299|CRISPRCasFinder
TCACAAAACCTGTGGGAGCCAGCCAAACCAAATCATCACAATCAAGACAGTTGATTTATGTCGATCACAAAACCTGTGGGAGCCAGCC

>NZ_CP010945|3|3|6570212-6570299|CRISPRCasFinder
TCACAAAACCTGTGGGAGCCAGCC	AAACCAAATCATCACAATCAAGACAGTTGATTTATGTCGA
TCACAAAACCTGTGGGAGCCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010945.1\|WP_017340452.1\|6575930_6576941_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NZ_CP010945.1\|WP_017340454.1\|6578062_6578425_+\|DUF5064-family-protein	unknown	unknown	gnl\|CDD\|374738
NZ_CP010945.1\|WP_017340442.1\|6561397_6562363_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP010945.1\|WP_017340447.1\|6568827_6570159_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP010945.1\|WP_017340444.1\|6565191_6565800_+\|biliverdin-producing-heme-oxygenase	unknown	unknown	gnl\|CDD\|225770
NZ_CP010945.1\|WP_017340448.1\|6570327_6571191_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP010945.1\|WP_017340450.1\|6573153_6574581_+\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522
NZ_CP010945.1\|WP_017340456.1\|6581011_6583864_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP010945.1\|WP_017340441.1\|6560797_6561316_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP010945.1\|WP_007949423.1\|6580616_6581000_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|237370
NZ_CP010945.1\|WP_017340451.1\|6574605_6575862_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP010945.1\|WP_017340453.1\|6577120_6578050_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NZ_CP010945.1\|WP_017340438.1\|6557060_6558887_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_CP010945.1\|WP_017340455.1\|6578667_6580176_+\|sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225821
NZ_CP010945.1\|WP_017340446.1\|6566553_6568692_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP010945.1\|WP_017340445.1\|6565958_6566354_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP010945.1\|WP_017340443.1\|6562485_6565077_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP010945.1\|WP_017340440.1\|6560255_6560720_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP010945.1\|WP_017340439.1\|6559107_6560109_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP010945.1\|WP_017340449.1\|6571187_6572615_-\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522

Protein	Function_ID	Function_description	E-value
NZ_CP010945.1\|WP_017340452.1\|6575930_6576941_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NZ_CP010945.1\|WP_017340454.1\|6578062_6578425_+\|DUF5064-family-protein	gnl\|CDD\|374738	pfam16703, DUF5064, Domain of unknown function (DUF5064). This is found in Pseudomonas species. Several members are annotated as being acetyl-CoA carboxylase alpha subunit, but his could not be confirmed.	7.82363e-42
NZ_CP010945.1\|WP_017340442.1\|6561397_6562363_+\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.0922e-52
NZ_CP010945.1\|WP_017340447.1\|6568827_6570159_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.47548e-35
NZ_CP010945.1\|WP_017340444.1\|6565191_6565800_+\|biliverdin-producing-heme-oxygenase	gnl\|CDD\|225770	COG3230, HemO, Heme oxygenase [Inorganic ion transport and metabolism].	7.41694e-47
NZ_CP010945.1\|WP_017340448.1\|6570327_6571191_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	6.65365e-55
NZ_CP010945.1\|WP_017340450.1\|6573153_6574581_+\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP010945.1\|WP_017340456.1\|6581011_6583864_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP010945.1\|WP_017340441.1\|6560797_6561316_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.07777e-26
NZ_CP010945.1\|WP_007949423.1\|6580616_6581000_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|237370	PRK13380, PRK13380, glycine cleavage system protein H; Provisional.	2.87533e-72
NZ_CP010945.1\|WP_017340451.1\|6574605_6575862_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP010945.1\|WP_017340453.1\|6577120_6578050_+\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NZ_CP010945.1\|WP_017340438.1\|6557060_6558887_-\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_CP010945.1\|WP_017340455.1\|6578667_6580176_+\|sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|225821	COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].	0
NZ_CP010945.1\|WP_017340446.1\|6566553_6568692_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.00793e-72
NZ_CP010945.1\|WP_017340445.1\|6565958_6566354_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	1.16172e-37
NZ_CP010945.1\|WP_017340443.1\|6562485_6565077_+\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	4.23678e-152
NZ_CP010945.1\|WP_017340440.1\|6560255_6560720_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	1.67794e-88
NZ_CP010945.1\|WP_017340439.1\|6559107_6560109_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.46516e-176
NZ_CP010945.1\|WP_017340449.1\|6571187_6572615_-\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0

>NZ_CP010945.1|WP_017340447.1|6568827_6570159_+|CoA-transferase
MTGLLTSIQAALGLPRTPIPFTSSGALPSAFAVTDLACASIAAAGQAASALLQQQTGRLPNLEVDRRLASFWFATSIRPVGWSVPPLWDPVAGDYATKDGWIRLHTNAPHHRAAAESVLGACADRADAASKVAQWSKTDLEQAVVDAGGCAAEMRTWAQWQAHPQGLAVNAEPLIQFSAGNPQPPKSWKGSVAQPLAGIKVLDLTRVLAGPIASRFLAGLGADVLRIDPPTWNEPGVVPEVTLGKRCARLDLHNPDDRAVFDSLLKDADILLHGYRADALERLGYGVAERQKLAPGLVDVCLNAYGWSGPWQNRRGFDSLVQMSSGIAEAGMRWKNADKPMPLPVQALDHATGYLMAAAAITLLGRAGSARLSLARTAKLLIENGAGTDETLRAEDDKDQGLLVEQTPWGPAHRLHVPLKITGTPLQWALPAAELGSHRAQWW
>NZ_CP010945.1|WP_017340446.1|6566553_6568692_+|methyl-accepting-chemotaxis-protein
MFDSLSIRLKIVLLSGLCLLGVIALIVSMNFYETNQNDELVSTSSSKMLTDSVQDLLQAKAAEQAVRVQKTFGESLLVVTALADQIKDMRNMAAKRSLEAGALREELNQSLKTAFERNSKVLGIWLAFEPNGLDGKDSEFANDAARQSNEAGRFASYWSRAGGAALNTIMVEDDMTKTTLSLSGTPYNSWYTCPRDSKRTCLLDPYADTVGGKEMLMTTISVPLLVDGKSIGVVGVDIALDALQAAAVDSQRDLFNNAGHMLIVSGSGVLAGYSIDASKVGKSIGDTLGAEGKDVLQLLSGGAPKILEQGDLIRAVYPVSPISDSRAWGVVIDLPKQVLLADSVKLQAVLDDAQQSGTIKAVLVAVGAGLVGLLLIWLTASGVTRPINSVAEMLKAIASGDGDLTQRLHYSKKDELGELVSWFNRFLDKLQPTIAQIKQSITDARGTADQSSEIARQTSEGMQVQFREIDQVATASNEMSATAHDVANSASSAANAAKGADQSARDGMSIIERSTRDINQLADEVSKAVTEVEALAVNSEQIGSVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIERIQSGTRGVVATMHSSQTQAHSNAGQIQQAVQALSKISDAVTVISDMNLQIASAAEQQSAVAEEVNRNVSAIRTVTETLTGQATESAQISSQLNALTNHQMKLMDQFRV
>NZ_CP010945.1|WP_017340445.1|6565958_6566354_+|YbaN-family-protein
MPLPVPNKLARLLFGLLAYISLGIGLVAIVVPGLPTTEFILLAAWAATRSSPRLSAWLEHHRLFGPILCNWRNGKIVARRAKVSATLSMLLCAAVMWLMLDHGWPVYLAIAGMSLGNLWIWSRPESMPSPS
>NZ_CP010945.1|WP_017340444.1|6565191_6565800_+|biliverdin-producing-heme-oxygenase
MTTQDTAQRPALRSQRLNQITNEPHTRLDELVKAHAQFETQASFARFVVAQYWFQSELVGLYNDAELIAIIPDLAARCRAEAAKADLADLETEVPAPVAGAVKNPGKAEALGWLFVSEGSKLGAAFLIKRAVGLGLSETFGARHLGEPAGGRAEGWKSFVKTLDGLEFTEQEEAELDKGAIAAFNRFTVLLEQAYATTPELA
>NZ_CP010945.1|WP_017340443.1|6562485_6565077_+|TonB-dependent-receptor
MSSRLTRHSSSPSRVLSLLTAAILMAGSAPLMAATAPEQPTRNMGDYAFAIPQQSLVSALNAFTAVTGWQVGLPAELGQGVASPGVRGSLSPEKALDRLLVGTQLSYRKLGNNNIVLEKRQSSGALNLQQVTISATRQEQSVESVPGTVTVHTREELDRNNVNTIKNLVRYEPGVSVGGAGQRGGISGYNIRGIDGDRILTQVDGVEVPNDFFNGPYAKTQRNYVDPEIIKRVEILRGPASVLYGSNAIGGAVSYFTLDPDDIIKPGKDVGARLKTGYSSADDSWLKSATVAGRADQFDGLLHYSQRDGHETESYGSHNGTGLARTAANPEDVRTSNVLAKIGWNYNEDSRLGLTYEKYKDDRDTDQKSAYGGPYFQGAPTVPNSTLPGGMYQWRTGNDTVTRERFGLEHSFALDSLLVDNVKWSLNHQVAKTDQSTEEFYFPFSRKVLRTRETLYEEKQWVFDAQLDKAFSIADTEHLLTYGTTIKQQKVTGSRSGNGTCYQSFGTCRVVGAVSPLDVLKKSSDFPDPTVNTYSLFAQDQISWDKWTFLPGLRYDYTQLKPHITQEFMNTVAATPGGTVSDDTKTWHRVSPKFGLTYALTDHYTWYGQYAEGFRTPTAKALFGRFENTTTGYRVEPNPNLEPETSKGFETGLRGQFESGSFDVAVFYNKYRDFIEEDAITPGYSELTFQSANIKHATIKGAEVKGRLNLDVFGAPQGLYTQGSVAYAYGRNNDNGEPINSVNPLTGVFGLGYDQDNYGGLLSWTLVKKKDRVDDSTFKSPDGVSSQFKSPGFGVLDLTGFYKVTDDVTVSAGVYNLTDKKYWLWDDVRGYDGVGEASVISPANLDRLTQPGRNFAVNVVWDI
>NZ_CP010945.1|WP_017340442.1|6561397_6562363_+|FecR-domain-containing-protein
MTDTHRSPPPSPARDAASAMDQALDWLIVMGSPSEEQARQFHEWLDAAPLHAEAFAKAQAIWDGPQVVHCAQNLATLPPKVTVLSRLRPHWKPLATAAVLILGLFSFSSLPMRLQADHLTVVGERQRLQLEDGSKVLLNTNSAFSSTINDQRRVARLYQGEAFFDVPARLGQPLEIDAGPVKASVHDTAFAVRYLDGVTQVRVQRGDVDLRATRDDARIRLSAGESIRIGPNGFDRPAKLDAATDLAWVQGRLVFENCPLSQVLAELRRYYPGWIINTNEQLADVAVTGNYRLDQPLDVVRSLAHITSARLQEFPALVILN
>NZ_CP010945.1|WP_017340441.1|6560797_6561316_+|sigma-70-family-RNA-polymerase-sigma-factor
MSQSLFNHVFIAQRVSLLRTLERMVNNHSTAEDLLQETYLRVTRALGERSIDHLEPFVFQTARNLALDHLRARRIQSRTMLDDVPADVVESIAAPASSAEDAAHAEQLLERLNVSLGELSARQQQIFILSRLHGHSYLEISEKLGVSLSTVQKELKLIMAICIGVAERLNGD
>NZ_CP010945.1|WP_017340440.1|6560255_6560720_+|methylglyoxal-synthase
MIGISFTQKTVAARKRIALVAHDHCKVFLLDWAERHKDKLAQHELVATGTTGLLLQQRLDLPVESMISGPLGGDQQLGARIAEQRVDMLVFFWDPFEPQPHDPDIKALLRVAAVWNIPVACNECSADYLLSSPLMEQAHSQRIPDYATYLLGRA
>NZ_CP010945.1|WP_017340439.1|6559107_6560109_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTLRIAINGFGRIGRNVLRALYTQGYRQDLQIVAINDLGDSAINAHLLKYDTVHGTFDADVQHDQESLTVNGDRIAVSAIRNPAELPWAAEKIDVVFECTGLFTDRAKAAAHITAGARKVIISAPAKGADATVVYGVNHDILRQSHQIISNASCTTNCLAPVAQVLHRELGIESGLMTTIHAYTNDQNLTDVYHTDPYRARSATQNMIPSKTGAAEAVGLVLPELAGKLTGMAVRVPVINVSLVDLTVQLKREASADEVNALLKEASQHSKILGYNTLPLVSSDFNHNPLSSIFDANHTKSSGKLLKVLAWYDNEWGFSNRMLDNCLALCNAE
>NZ_CP010945.1|WP_017340438.1|6557060_6558887_-|phosphogluconate-dehydratase
MHPRVLEVTERLIARSRATREAYLALIRGAASDGPMRGKLQCANFAHGVAGCGTEDKHSLRMMNSANIAIVSSYNDMLSAHQPYEVFPEQIKKALREIGSVGQFAGGTPAMCDGVTQGEPGMELSLPSREVIALSTAVALSHNMFDGALMLGICDKIVPGLMMGALRFGHLPMIFVPGGPMVSGISNKQKADVRQRYAEGKATREELLESEMNSYHSPGTCTFYGTANTNQLLMEVMGLHLPGSSFVNPNTPLRDALTREAAHQVTRLTKQNGNFMPIGEIVDERSLVNSIVALNATGGSTNHTLHMPAIAMAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMSFLIRELLDAGLLHENVNTVLGHGLSRYTQEPFLDNGELVWREGVTESLDETILRPVARAFSPEGGLRVMEGNLGRGVMKVSAVALENQIVEAPAMVFQDQQDLADAFKAGLLEKDFVAVMRFQGPRSNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAHVGGALARVQEGDIIRVDGVKGTLELKVDADEFAAREPAKGLLGNNIGSGRELFGFMRMAFSSAEQGASAFTSALETLN
>NZ_CP010945.1|WP_017340448.1|6570327_6571191_-|DNA-3-methyladenine-glycosylase-2-family-protein
MRLLLAYRPPYDWPAMLGFLSARAVVGMEAIVDGVYSRSIGLNGVHGTFSITPVAGDALQVTLDFPDAAAVPEIVARLRRMFDLDADLPTIHRPLKTDPLMARLIAERPGLRVPGAWDGLELAIRAVLGQQITVSAAIRLAGKLVAQYGQPLASVLPGVTSVFPEATVLAVADLATLGMPKTRGRTLSGVAQALLDDPLLFEPGREGGVARLLALNGIGDWTAQYIALRQLREMDAFPSGDVGLIKALVALEGERVTARELSARAQDWRPFRGYAAQLLWISLSRMD
>NZ_CP010945.1|WP_017340449.1|6571187_6572615_-|arginine-ornithine-antiporter
MSQPTQKLPLSALIALVVGSMIGGGIFSLPQNMAARADAGAILIGWAITAVGMLTLAFVFQTLANRKPELDSGVYAYAKAGFGDYMGFSSAWGYWISAWLGNVGYFVLLFSTLGYFFPVFGQGNTPVAIGCASVLLWAVHFLVMRGIKEATFINQLTTVAKIVPLIMFIVIAAVAFKADIFTRDVWGRSNPNFGGIMDQVRNMMLVTVFVFIGIEGASVYSARAEKRSDVGRATVIGFLGVLALLVLVNVLSLGIMSQPELANLQNPSLAAVLEHVVGPWGALLISIGLAISLLGALLSWALLCAEILFATAKDNTMPAFLKKENANHVPVNALWLTNVMIQIFLLITLFSAGTYTSLIYLASSMILVPYLWSAAYAVLLSGRGETYEHASAERTKDLLIGGIALSYAVWLLYAGGVKYLLLSALLYAPGVILFAKAKHEQGEPLFTPIETGIFTAVISGAGLAAYGLYSGLLSL
>NZ_CP010945.1|WP_017340450.1|6573153_6574581_+|arginine-ornithine-antiporter
MSESPGKLKLGALVALVVGSMIGGGIFSLPQNMAASADVGAVLIGWAITAVGMLTLAFVFQTLANRKPDLDGGVYAYAKAGFGDYMGFSSAWGYWISAWLGNVGYFVLLFSTLGYFFPIFGEGNTVAAVIGASVLLWAVHFLVLRGIKEAAFINLVTTVAKVVPLLLFVLIAVFAFKLDIFTADIWGLKNPDLGSVMNQVRNMMLVTVWVFIGIEGASIFSARAEKRSDVGKATVIGFITVLLFLVLVNVLSLGIMTQPELAKLQNPSMAAVLEHVVGPWGAVLISVGLVISLLGALLSWVLLCAEIMFAAAKDHTMPAFLRKENAKQVPVNALWLTNAMVQLFLVITLFSASTYLSLIYLATSMILVPYLWSAAYALLLAVRGESYENAAAERRKDLIIGAVALIYAVWLIYAGGVKYLLLSALLYAPGAILFAKAKMELNKPVFTNVEKLIFAAVIVGALVAAYGLYDGFLTL
>NZ_CP010945.1|WP_017340451.1|6574605_6575862_+|arginine-deiminase
MTTEKVKYGVHSEAGKLRKVMVCSPGLAHQRLTPNNCDELLFDDVLWVAQAKRDHFDFVTKMRERNVDVLEMHNLLTDIVAIPEALDWILERKVTANSVGLGLINEVGSWLRSLEPRHIAEFLIGGVSADDLPDSFGGKTIQMFRDFLGHSSFILPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLATAIYKFHPQFTNADFEIWYGDPDQDHGSATLEGGDVMPIGNGVVLIGMGERSSRQAIGQLAVNLFKNKAVEKVIVAGLPKSRAAMHLDTVFSFCDRDLVTIFPEVVNQIVAFTLRPDESKPGGVDIRREETNFLDTVAKALNLKALRVVETGGNSFAAEREQWDDGNNVVAVEPGVVIGYDRNTYTNTLLRKAGVEVITISAGELGRGRGGGHCMTCPIIRDPIDY
>NZ_CP010945.1|WP_017340452.1|6575930_6576941_+|ornithine-carbamoyltransferase
MAFNMRNRSLLSLMHHTTRELNYLLDLSRDLKRAKYTGTERPHLQGKNIALIFEKTSTRTRCAFEVAAHDQGAHVTYIDPVSSQIGHKESMKDTARVLGRMFDAIEYRGFEQEIVEELAKFAGVPVFNGLTAEFHPTQMIADTLTMREHSDKPLHDISYAYLGDARYNMGNSLLMIGAKLGMDVRIAAPKALWPHADFIAQCKAFAEESGARITITEDPKAAVKGVDFIHTDIWVSMGEPVEAWDERIEQLLPYQVNAAMMKASGNPRVKFMHCLPAFHNSETKVGKDIAARYPHLANGVEVTEEVFESPANIAFEQAENRMHTIKAILVSALADI
>NZ_CP010945.1|WP_017340453.1|6577120_6578050_+|carbamate-kinase
MRIVVALGGNALLRRGEPMTADNQRANIRVATEQIAKIHAGNELVIAHGNGPQVGLLSLQAAAYTSVSPYPLDVLGAETEGMIGYIIEQELGNLLDFEVPFATLLTQVEVDANDPAFQNPTKPIGPVYAKAEAEKLAAEKGWAIAPDGDKYRRVVASPRPKRIFEIRPIKWLLEKGSIVICAGGGGIPTMYGASGKLQGVEAVIDKDLCSALLAEQLESDLLVIATDVNAACIDFGKPTQKAIAQAHPDEMEKLGFAAGSMGPKVQAACEFARHTGKTAVIGSLSDIEAIVQGTAGTRISTATPGITYL
>NZ_CP010945.1|WP_017340454.1|6578062_6578425_+|DUF5064-family-protein
MATFAPGHLHIERHALTSDDVSYNLHFDYEVSNNDKGEKGIQFTMHGSILGKDMSETFFLPKVEAYNFANNITNIAEKYGIPRTHSQIGSAHKNYDQVFEDIRKKLDMKSGDPVDLKNFE
>NZ_CP010945.1|WP_017340455.1|6578667_6580176_+|sigma-54-dependent-transcriptional-regulator
MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPNVYIDAPTLSPEVLEELRDALLSVRGVQAMTVVDILPGQRRHLQLDALLAAMTDPVLALDSDGKVLLANPALIALYGREPAGESIADLFADPALLDTLLEQGFRLPLREITVNGQTLLLDATPITDAGALLTLYQPNRIGERLSALHHDHAEGFDALLGESPAIRTLKARAQRVAALDAPLLIQGETGTGKELVARACHAISARHSSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQAKLLRFLNDGSFRRVGGDREVKVNVRILSATHRDLEKMVSEGTFREDLFYRLNVLNVEVPPLRERGQDILLLARYFMQQACAQIQRPVCRLAPGTYPALLGNRWPGNVRQLQNVIFRAAAICESSLVDIGDLDIAGTSVARQSDSEVDSLEQAMEEFEKTLLEKLYVSYPSTRQLASRLQTSHTAIAHRLRKYGIPNKP
>NZ_CP010945.1|WP_007949423.1|6580616_6581000_+|glycine-cleavage-system-protein-GcvH
MSELRFTEDHEWLRTEADGTVTVGITAFAQNALGDVVFVQLPELQSYDKGAEAATVESVKAASGVYMPLDGEVLEVNPALDSSPELVNEDPLGEGWFFRFQPTDASAVAKLLDQDAYDRLIKANAEA
>NZ_CP010945.1|WP_017340456.1|6581011_6583864_+|aminomethyl-transferring-glycine-dehydrogenase
MTQVNLTTANEFIARHIGPRSGDEQAMLNSLGFDSLEALSASVIPESIKGTSVLGMDDGLSEADALALIKGIAAKNQLFKTYIGQGYYGTHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHAFFASVHCHPQTLDVLRTRAEPLGIDVVVGDELELTDVTPFFGALLQYPASNGDVFDYRELTERFHAANALVAVAADLLALTVLTPPGEFGADVAIGSAQRFGVPLGFGGPHAAYFSTKDAFKRDMPGRLVGVSVDRFGKPALRLAMQTREQHIRREKATSNICTAQVLLANIASMYAVYHGPKGLTQIANRIHHLTAILAKGLSALGLTVEQASFFDTLTLNTGANTAKLHDKARAQQINLRVVDGERLGLSLDETTSQADVETLWALFADGKALPDFAALAAAVVSTLPAALVRQSPILSHPVFNRYHSETELMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGALHPFAPAEQSAGYQQLTDELEAMLCAATGYDSISLQPNAGSQGEYAGLLAIRAYHQSRGEDRRDICLIPSSAHGTNPATANMAGMRVVVTACDARGNVDIEDLRAKAIEHREHLAALMITYPSTHGVFEEGIREICGIIHDNGGQVYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPIGVKSHLTPFLPGHAQMERKEGAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNANYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSFPVAGTLMIEPTESESKEELDRFCDAMIRIREEIRAVENGTLDKDDNPLKNAPHTAAEIVGEWTHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLVCACPSIESYA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

514483 : 562267

Tupanvirus(20.0%)

protease,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017341175.1\|514483_514987_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_017341176.1\|515236_516124_+	acyltransferase	NA	NA	NA	NA
WP_017341177.1\|516125_516674_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_017341178.1\|516843_518043_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.3e-09	27.0
WP_017341179.1\|518248_519106_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_017341180.1\|519306_519939_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_017341181.1\|520088_523106_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_017341182.1\|523102_523432_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_007947735.1\|523446_524697_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_017341183.1\|524720_525974_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.0e-100	53.2
WP_017341184.1\|526287_527004_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_017341185.1\|527135_528176_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_017341186.1\|528421_529246_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_017341187.1\|529351_530452_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_031319164.1\|530735_532031_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_017341189.1\|532767_533334_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_017341190.1\|533394_534165_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_017341191.1\|534180_535401_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_017341192.1\|535400_537350_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_017341193.1\|537558_539619_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_007947752.1\|539634_540165_-	4-vinyl reductase	NA	NA	NA	NA
WP_008033250.1\|540243_541221_-	membrane dipeptidase	NA	NA	NA	NA
WP_017341195.1\|541452_541854_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_017341196.1\|541914_542331_+	DUF3010 family protein	NA	NA	NA	NA
WP_017341197.1\|542467_543412_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_017341198.1\|543606_544551_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017341199.1\|544626_545514_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_017341200.1\|545655_546621_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_017341201.1\|546688_547165_+	thioesterase family protein	NA	NA	NA	NA
WP_017341202.1\|547178_548342_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_017341203.1\|548737_549001_+	hypothetical protein	NA	NA	NA	NA
WP_017341204.1\|549095_550199_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_017341205.1\|550794_552171_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_017341206.1\|552606_553554_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017341207.1\|553620_554466_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_017341208.1\|554462_555641_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-25	37.1
WP_017341209.1\|555895_557902_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.8e-19	27.1
WP_017341210.1\|558223_558817_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_017341211.1\|558925_560398_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_017341212.1\|560563_562267_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.9e-49	29.7

DBSCAN-SWA_2

1504572 : 1518738

Pseudomonas_phage(71.43%)

integrase,tail

attL 1504120:1504137|attR 1518954:1518971

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1504120:1504137	attL	NA	NA	NA	NA
WP_017336030.1\|1504572_1504764_-	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	8.9e-17	69.0
WP_017336032.1\|1505040_1505259_-	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	1.7e-19	81.0
WP_031318262.1\|1505469_1505670_-	hypothetical protein	A0A1B0VML2	Pseudomonas_phage	1.4e-25	93.9
WP_144425208.1\|1506299_1507280_+	hypothetical protein	A4PE73	Ralstonia_virus	9.8e-51	39.5
WP_017336035.1\|1507282_1507570_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_017336036.1\|1508399_1508828_-	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	8.7e-44	58.3
WP_017336037.1\|1508890_1509496_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	3.4e-46	51.0
WP_017336038.1\|1509534_1509930_-	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	1.4e-35	60.0
WP_031318265.1\|1510035_1510347_-	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	1.3e-33	69.2
WP_017336040.1\|1510702_1512496_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	0.0e+00	90.5
WP_017336041.1\|1512482_1513364_-	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	3.3e-138	85.3
WP_017336042.1\|1513360_1513582_-	hypothetical protein	NA	NA	NA	NA
WP_017336043.1\|1513574_1513850_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	1.2e-35	80.2
WP_017336044.1\|1513870_1514395_-	hypothetical protein	NA	NA	NA	NA
WP_017336045.1\|1514391_1514619_-	hypothetical protein	NA	NA	NA	NA
WP_031318268.1\|1515097_1515595_-	Rha family transcriptional regulator	A0A1B0VMK9	Pseudomonas_phage	6.7e-56	73.4
WP_017336047.1\|1515615_1515996_-	hypothetical protein	NA	NA	NA	NA
WP_017336048.1\|1515997_1516258_-	AlpA family phage regulatory protein	A0A1B0VNF0	Pseudomonas_phage	5.3e-36	86.0
WP_017336049.1\|1516419_1517430_-	hypothetical protein	NA	NA	NA	NA
WP_017336050.1\|1517532_1518738_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	4.3e-205	85.8
1518954:1518971	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2486685 : 2585455

Pseudomonas_phage(18.92%)

tRNA,lysis,protease,holin,bacteriocin,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162491066.1\|2486685_2487498_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.8e-08	33.0
WP_017336692.1\|2487642_2488047_-	SufE family protein	NA	NA	NA	NA
WP_017336693.1\|2488043_2489249_-	cysteine desulfurase	Q2XUY6	environmental_halophage	2.7e-66	35.3
WP_017336694.1\|2489390_2490425_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_017336695.1\|2490458_2490821_-	ArsC family reductase	NA	NA	NA	NA
WP_017336696.1\|2491034_2492660_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_017336697.1\|2492696_2493440_-	hypothetical protein	NA	NA	NA	NA
WP_017336698.1\|2493598_2494798_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_017336699.1\|2494972_2497675_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_017336700.1\|2497720_2498503_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_007907989.1\|2498876_2499614_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_017336701.1\|2499807_2500671_+	elongation factor Ts	NA	NA	NA	NA
WP_003172271.1\|2500880_2501624_+	UMP kinase	NA	NA	NA	NA
WP_008028968.1\|2501620_2502178_+	ribosome recycling factor	NA	NA	NA	NA
WP_017336702.1\|2502191_2502947_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	8.5e-18	38.1
WP_017336703.1\|2502946_2503759_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_017336704.1\|2503755_2504946_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_017336705.1\|2504999_2506352_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_017336706.1\|2506427_2508803_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_007907155.1\|2508848_2509352_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_017336707.1\|2509355_2510411_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_017336708.1\|2510519_2510960_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_017336709.1\|2510956_2511733_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_017336710.1\|2511735_2512866_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_017336711.1\|2512877_2513504_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	5.7e-28	39.7
WP_017336712.1\|2513580_2517102_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	2.7e-199	36.5
WP_017336713.1\|2517242_2518190_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_017336714.1\|2518324_2519653_+\|tRNA	tRNA lysidine(34) synthetase TilS	M1I2W1	Paramecium_bursaria_Chlorella_virus	1.0e-05	26.0
WP_017336716.1\|2519927_2521559_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.8e-158	53.5
WP_017336717.1\|2521564_2522410_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.2e-49	42.8
WP_008039408.1\|2522566_2523856_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.1e-137	59.7
WP_008028992.1\|2524027_2524306_+	cell division protein FtsB	NA	NA	NA	NA
WP_017336718.1\|2524302_2525010_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_017336719.1\|2525089_2525986_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017336720.1\|2526093_2527206_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.4e-32	28.5
WP_017336721.1\|2527214_2528060_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_017336722.1\|2528103_2528577_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_017336723.1\|2528573_2529632_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_017336724.1\|2529619_2530369_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	53.4
WP_174602683.1\|2530407_2531043_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.0e-41	52.3
WP_017336726.1\|2531245_2532103_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	8.4e-06	33.3
WP_008154012.1\|2532208_2533216_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_017336727.1\|2533444_2534458_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_017336728.1\|2534457_2535462_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_017336729.1\|2535462_2536332_+	ABC transporter permease	NA	NA	NA	NA
WP_017336730.1\|2536328_2537123_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_017336731.1\|2537119_2538151_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.5e-29	37.1
WP_017336732.1\|2538176_2539007_+	phosphodiesterase	NA	NA	NA	NA
WP_017336733.1\|2539194_2540514_+	OprD family porin	NA	NA	NA	NA
WP_007908827.1\|2540945_2541269_-	ferredoxin family protein	NA	NA	NA	NA
WP_017336734.1\|2541411_2543991_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	24.2
WP_031318438.1\|2544201_2544936_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	8.5e-132	95.5
WP_080995116.1\|2545639_2545825_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	7.6e-13	89.5
WP_017336737.1\|2545834_2546665_+\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_017336738.1\|2546797_2547145_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.8e-52	88.7
WP_017336739.1\|2547233_2547758_+	hypothetical protein	NA	NA	NA	NA
WP_017336740.1\|2547761_2548373_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.5e-41	59.0
WP_017336741.1\|2548383_2548716_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.2e-37	70.0
WP_017336742.1\|2548712_2549708_+\|plate	baseplate J/gp47 family protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.6e-109	63.5
WP_017336743.1\|2549704_2550340_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.3e-43	53.7
WP_017336744.1\|2550340_2551804_+\|tail	phage tail protein	A0A077K818	Ralstonia_phage	2.9e-99	41.2
WP_017336745.1\|2551830_2552532_+\|tail	tail fiber assembly protein	B5TK80	Pseudomonas_phage	1.3e-15	33.3
WP_017336746.1\|2552623_2552833_+	hypothetical protein	NA	NA	NA	NA
WP_017336747.1\|2552835_2554002_+\|tail	tail protein	B0ZSG8	Halomonas_phage	4.5e-127	57.0
WP_017336748.1\|2554001_2554508_+\|tail	phage major tail tube protein	Q6R4W3	Vibrio_virus	3.1e-24	36.3
WP_017336749.1\|2554584_2555169_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	5.5e-25	36.5
WP_017336751.1\|2555297_2556956_+	hypothetical protein	NA	NA	NA	NA
WP_017336752.1\|2556955_2557339_+\|tail	phage tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.0e-32	49.6
WP_017336753.1\|2557331_2557544_+\|tail	tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.8e-18	64.3
WP_017336754.1\|2557553_2558570_+	hypothetical protein	A0A2H4JH05	uncultured_Caudovirales_phage	8.2e-101	55.3
WP_017336755.1\|2558617_2559181_+	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	2.2e-79	79.0
WP_031318440.1\|2559162_2559699_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	4.2e-64	75.8
WP_031318442.1\|2559779_2560280_+	CinA family protein	B5TK85	Pseudomonas_phage	1.2e-73	86.1
WP_017336758.1\|2560363_2561416_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.2e-110	59.9
WP_017336759.1\|2561424_2561892_+	recombination regulator RecX	NA	NA	NA	NA
WP_017336760.1\|2561935_2563054_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_017336761.1\|2563420_2563621_+	hypothetical protein	NA	NA	NA	NA
WP_017336762.1\|2563622_2564048_-	hypothetical protein	NA	NA	NA	NA
WP_017336763.1\|2564236_2564980_+	DTW domain-containing protein	NA	NA	NA	NA
WP_017336764.1\|2565189_2565840_+	response regulator transcription factor	NA	NA	NA	NA
WP_017336765.1\|2565915_2566278_+	diacylglycerol kinase	NA	NA	NA	NA
WP_031318445.1\|2566274_2567201_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003443014.1\|2567323_2568103_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_017336767.1\|2568235_2568934_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_017336768.1\|2569126_2569897_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_017336769.1\|2570092_2570563_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.6e-37	50.7
WP_017336770.1\|2570638_2571349_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_017336771.1\|2571536_2572010_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_017336772.1\|2572124_2573462_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_017336774.1\|2573749_2575651_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	3.1e-77	34.6
WP_017336775.1\|2575860_2576166_-	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_017336776.1\|2576737_2578033_-	virulence factor family protein	NA	NA	NA	NA
WP_017336777.1\|2578032_2580675_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_017336778.1\|2581614_2582676_+	DNA polymerase IV	NA	NA	NA	NA
WP_017336779.1\|2582768_2583722_-	hypothetical protein	NA	NA	NA	NA
WP_017336780.1\|2583739_2585455_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_4

2687791 : 2778419

100

uncultured_Caudovirales_phage(44.44%)

head,integrase,capsid,transposase,portal,protease,holin,tail,terminase,plate

attL 2708936:2708982|attR 2745968:2746014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080995117.1\|2687791_2688742_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_017336873.1\|2688844_2689732_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_017336874.1\|2689761_2690544_-	aldolase	NA	NA	NA	NA
WP_017336875.1\|2690652_2691195_+	helix-turn-helix domain-containing protein	I3VYZ1	Thermoanaerobacterium_phage	2.8e-07	40.5
WP_017336876.1\|2691342_2692362_-	DUF4917 family protein	NA	NA	NA	NA
WP_017336877.1\|2692520_2693669_+	L-threonine dehydrogenase	NA	NA	NA	NA
WP_031318471.1\|2693738_2694647_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017336879.1\|2694882_2696076_+	CoA transferase	NA	NA	NA	NA
WP_017336880.1\|2696072_2696999_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_017336881.1\|2697088_2698420_+	MFS transporter	NA	NA	NA	NA
WP_017336882.1\|2698498_2698987_-	DMT family transporter	NA	NA	NA	NA
WP_031318474.1\|2699064_2699970_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_017336884.1\|2700017_2700482_+	fosfomycin resistance glutathione transferase	NA	NA	NA	NA
WP_017336885.1\|2700500_2701139_+	LysE family translocator	NA	NA	NA	NA
WP_017336886.1\|2701226_2702576_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.6e-12	33.1
WP_080995118.1\|2702692_2702851_+	stress protein	NA	NA	NA	NA
WP_017336887.1\|2702924_2703428_+	DUF4142 domain-containing protein	NA	NA	NA	NA
WP_017336888.1\|2703495_2703906_-	low affinity iron permease family protein	NA	NA	NA	NA
WP_017336889.1\|2704011_2704551_-	membrane protein	NA	NA	NA	NA
WP_017336890.1\|2704677_2705181_-	inclusion body family protein	NA	NA	NA	NA
WP_017336891.1\|2705574_2706345_+	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_017336893.1\|2706770_2707040_-	hypothetical protein	NA	NA	NA	NA
WP_017336894.1\|2707510_2707819_-	hypothetical protein	NA	NA	NA	NA
WP_031318476.1\|2708005_2708413_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	4.5e-34	52.3
WP_017336896.1\|2708449_2708629_-	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	5.4e-16	70.2
2708936:2708982	attL	NA	NA	NA	NA
WP_017336897.1\|2709132_2710368_+\|integrase	integrase family protein	A5VW56	Enterobacteria_phage	7.4e-11	23.3
WP_017336898.1\|2710403_2711681_-	hypothetical protein	NA	NA	NA	NA
WP_144425221.1\|2711826_2712030_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_017336899.1\|2712140_2712278_-	hypothetical protein	NA	NA	NA	NA
WP_017336900.1\|2712317_2712626_-	hypothetical protein	NA	NA	NA	NA
WP_031318478.1\|2712665_2715470_-	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	65.4
WP_031318481.1\|2715472_2715706_-	hypothetical protein	NA	NA	NA	NA
WP_033037498.1\|2715771_2716137_-	hypothetical protein	A0A2H4J947	uncultured_Caudovirales_phage	9.1e-10	39.3
WP_031318482.1\|2716145_2716427_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	4.4e-12	43.3
WP_017336905.1\|2716491_2716977_-	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	4.2e-55	67.1
WP_031318485.1\|2717006_2717207_-	DNA-binding protein	NA	NA	NA	NA
WP_017336907.1\|2717310_2717667_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	7.2e-20	52.3
WP_193393020.1\|2717975_2719226_-	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	2.4e-166	70.0
WP_017336910.1\|2719258_2719699_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	5.7e-67	82.9
WP_017336911.1\|2719705_2722393_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	3.8e-105	31.7
WP_017336912.1\|2722385_2722505_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	8.0e-08	75.0
WP_017336913.1\|2722513_2722858_-\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	6.5e-26	67.0
WP_017336914.1\|2722911_2723427_-\|tail	phage major tail tube protein	A0A2H4J916	uncultured_Caudovirales_phage	1.5e-79	81.3
WP_017336915.1\|2723476_2724649_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	2.1e-188	83.3
WP_017336916.1\|2724900_2725260_-\|tail	tail fiber assembly protein	B5TK80	Pseudomonas_phage	3.4e-09	49.2
WP_017336917.1\|2725256_2727674_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	2.9e-104	42.9
WP_017336918.1\|2727670_2728282_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	7.4e-81	70.6
WP_017336919.1\|2728278_2729193_-\|plate	baseplate J/gp47 family protein	Q9ZXK8	Pseudomonas_virus	7.6e-114	72.1
WP_031318488.1\|2729189_2729534_-	GPW/gp25 family protein	A0A2H4JE52	uncultured_Caudovirales_phage	1.4e-39	73.7
WP_031318490.1\|2729539_2730085_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	7.9e-50	57.1
WP_017336922.1\|2730159_2730612_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	9.5e-41	58.3
WP_017336923.1\|2730608_2731091_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	2.2e-67	75.2
WP_017336924.1\|2731208_2731640_-	hypothetical protein	Q9ZXL5	Pseudomonas_virus	6.7e-28	54.6
WP_017336925.1\|2731636_2731843_-	hypothetical protein	NA	NA	NA	NA
WP_017336926.1\|2731839_2732679_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	7.8e-89	65.7
WP_031318492.1\|2732675_2732990_-\|holin	phage holin, lambda family	A0A2H4J1U5	uncultured_Caudovirales_phage	4.1e-19	46.7
WP_017336928.1\|2733052_2733265_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	1.5e-20	68.7
WP_017336929.1\|2733264_2733729_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	1.4e-42	55.1
WP_017336930.1\|2733829_2734534_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	3.8e-81	65.7
WP_017336931.1\|2734536_2735541_-\|capsid	phage major capsid protein, P2 family	A0A2H4JCR7	uncultured_Caudovirales_phage	5.6e-118	65.6
WP_017336932.1\|2735579_2736422_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	3.0e-80	57.6
WP_017336934.1\|2736578_2738339_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	5.5e-286	81.7
WP_017336935.1\|2738338_2739379_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	1.7e-157	80.1
WP_193393021.1\|2739420_2740581_-	DNA adenine methylase	NA	NA	NA	NA
WP_017336937.1\|2740589_2741852_-	hypothetical protein	NA	NA	NA	NA
WP_031318494.1\|2741851_2743414_-	DGQHR domain-containing protein	NA	NA	NA	NA
WP_017336939.1\|2743580_2744414_-	phage antirepressor N-terminal domain-containing protein	A0A0P0ZBT0	Stx2-converting_phage	4.5e-36	51.0
WP_017336940.1\|2744434_2744641_-	hypothetical protein	NA	NA	NA	NA
WP_017336941.1\|2744637_2744796_-	hypothetical protein	A0A1B0VP73	Pseudomonas_phage	1.6e-08	66.0
WP_017336942.1\|2746222_2747107_-	alpha/beta hydrolase	NA	NA	NA	NA
2745968:2746014	attR	NA	NA	NA	NA
WP_017336943.1\|2747421_2748114_-	pseudouridine synthase	NA	NA	NA	NA
WP_017336944.1\|2748171_2748366_-	cysteine-rich CWC family protein	NA	NA	NA	NA
WP_017336945.1\|2748372_2749860_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.7e-23	38.9
WP_017336946.1\|2750051_2751824_-	allophanate hydrolase	NA	NA	NA	NA
WP_017336947.1\|2751849_2755491_-	urea carboxylase	NA	NA	NA	NA
WP_017336948.1\|2755772_2756414_-	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_017336949.1\|2756425_2757151_-	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_017336950.1\|2757163_2757952_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-30	35.4
WP_017336951.1\|2757948_2758764_-	ABC transporter permease	G3M9Y4	Bacillus_virus	1.7e-08	23.8
WP_017336952.1\|2758779_2759847_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017336953.1\|2760287_2760530_+	hypothetical protein	NA	NA	NA	NA
WP_017336954.1\|2760697_2761156_+	hypothetical protein	NA	NA	NA	NA
WP_017336955.1\|2761273_2762386_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010462292.1\|2762518_2763211_+	uracil-DNA glycosylase	S4VYQ4	Pandoravirus	8.8e-54	45.2
WP_017336956.1\|2763360_2764401_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_017336957.1\|2764393_2765908_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_017336958.1\|2765909_2766368_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_017336959.1\|2766427_2767405_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_144425225.1\|2767392_2767644_+	hypothetical protein	NA	NA	NA	NA
WP_017336961.1\|2767795_2768467_+	response regulator	NA	NA	NA	NA
WP_017336962.1\|2768459_2769845_+	sensor histidine kinase	W8CYF6	Bacillus_phage	2.2e-16	29.1
WP_017336963.1\|2769864_2770686_-	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	2.8e-30	33.3
WP_017336964.1\|2770720_2771662_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_007944081.1\|2771812_2772067_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_017336965.1\|2772050_2772503_+	hypothetical protein	NA	NA	NA	NA
WP_017336966.1\|2772471_2774088_-	L-aspartate oxidase	NA	NA	NA	NA
WP_003172477.1\|2774645_2775227_+	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	6.3e-05	23.5
WP_017336967.1\|2775257_2775845_+	sigma factor AlgU negative regulatory protein	NA	NA	NA	NA
WP_017336968.1\|2775853_2776810_+	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA
WP_017336969.1\|2776991_2778419_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	2.6e-28	30.5

DBSCAN-SWA_5

2866647 : 2891253

uncultured_Caudovirales_phage(95.83%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017337051.1\|2866647_2867118_+	hypothetical protein	A0A2H4J163	uncultured_Caudovirales_phage	6.2e-27	41.5
WP_017337052.1\|2867120_2867510_+	hypothetical protein	A0A2H4J8C3	uncultured_Caudovirales_phage	7.1e-29	52.4
WP_017337053.1\|2867808_2868681_+	restriction endonuclease	NA	NA	NA	NA
WP_017337055.1\|2869147_2869915_+	hypothetical protein	NA	NA	NA	NA
WP_017337056.1\|2870031_2870475_-	3'-5' exoribonuclease	A0A172JI25	Bacillus_phage	1.7e-05	28.7
WP_017337058.1\|2870941_2871277_+	hypothetical protein	A0A2H4J9H6	uncultured_Caudovirales_phage	3.4e-35	77.5
WP_017337059.1\|2871622_2872006_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.8e-54	99.1
WP_017337060.1\|2872016_2872370_+	DUF190 domain-containing protein	A0A2H4J2R0	uncultured_Caudovirales_phage	1.7e-58	96.6
WP_017337061.1\|2872372_2872903_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.6e-95	96.6
WP_017337062.1\|2873213_2874416_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	2.1e-196	99.7
WP_017337063.1\|2874528_2875062_-	NUDIX domain-containing protein	A0A2H4J8B3	uncultured_Caudovirales_phage	4.4e-69	96.9
WP_017337064.1\|2875154_2876006_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	3.0e-144	93.3
WP_017337065.1\|2876017_2877505_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.2e-269	99.2
WP_017337066.1\|2877985_2878537_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	5.5e-91	90.7
WP_017337067.1\|2878963_2879200_-	TM0996/MTH895 family glutaredoxin-like protein	NA	NA	NA	NA
WP_017337068.1\|2879218_2880256_-	permease	NA	NA	NA	NA
WP_017337069.1\|2880283_2881363_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	2.7e-102	64.8
WP_017337070.1\|2881591_2882014_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-67	91.4
WP_017337071.1\|2882034_2882748_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.2e-130	98.7
WP_003395039.1\|2882795_2883266_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	3.7e-80	99.4
WP_017337072.1\|2883282_2884566_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.4e-230	99.3
WP_007247283.1\|2884590_2884935_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.1e-60	100.0
WP_017337073.1\|2884943_2885366_-	arsenate reductase ArsC	A0A2H4J437	uncultured_Caudovirales_phage	5.1e-73	97.1
WP_017337074.1\|2885494_2885959_+	GNAT family N-acetyltransferase	A0A2H4J155	uncultured_Caudovirales_phage	1.6e-75	96.0
WP_017337075.1\|2886031_2886400_+	hypothetical protein	A0A2H4J9F9	uncultured_Caudovirales_phage	6.7e-61	98.4
WP_017337076.1\|2886459_2887632_+	DUF3800 domain-containing protein	A0A2H4J132	uncultured_Caudovirales_phage	7.8e-212	96.9
WP_017337077.1\|2887624_2888161_+	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	7.5e-69	92.3
WP_017337078.1\|2888479_2890249_-	AAA family ATPase	NA	NA	NA	NA
WP_017337079.1\|2890431_2891253_-	hypothetical protein	A0A2H4J5U3	uncultured_Caudovirales_phage	9.8e-129	87.5

DBSCAN-SWA_6

3509790 : 3556770

Pseudomonas_phage(53.66%)

head,integrase,capsid,tRNA,portal,protease,tail,terminase,plate

attL 3517200:3517250|attR 3557714:3557764

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008023971.1\|3509790_3511713_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.4e-124	37.3
WP_172435341.1\|3511712_3512264_+	translation initiation factor IF-3	NA	NA	NA	NA
WP_002553160.1\|3512324_3512519_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_007905879.1\|3512547_3512904_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_017337673.1\|3513013_3514030_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	8.4e-29	39.3
WP_017337674.1\|3514056_3516438_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002553164.1\|3516441_3516744_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
WP_003179985.1\|3516724_3517081_+	MerR family transcriptional regulator	NA	NA	NA	NA
3517200:3517250	attL	NA	NA	NA	NA
WP_017337675.1\|3517336_3518449_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A0U4JIT5	Pseudomonas_phage	1.8e-32	32.5
WP_017337676.1\|3518448_3518661_-	hypothetical protein	NA	NA	NA	NA
WP_017337677.1\|3518657_3519047_-	hypothetical protein	NA	NA	NA	NA
WP_017337679.1\|3519639_3519840_+	hypothetical protein	NA	NA	NA	NA
WP_017337682.1\|3520436_3520946_+	hypothetical protein	NA	NA	NA	NA
WP_017337683.1\|3520942_3521704_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_193392997.1\|3521842_3522331_-	hypothetical protein	NA	NA	NA	NA
WP_017337685.1\|3522498_3523320_+	hypothetical protein	NA	NA	NA	NA
WP_017337686.1\|3523379_3524636_-	hypothetical protein	NA	NA	NA	NA
WP_017337687.1\|3524777_3525137_-	hypothetical protein	NA	NA	NA	NA
WP_017337688.1\|3525304_3525949_+	hypothetical protein	NA	NA	NA	NA
WP_017337689.1\|3526267_3526720_-	helix-turn-helix transcriptional regulator	A0A2H4JA00	uncultured_Caudovirales_phage	2.6e-06	31.7
WP_017337690.1\|3526862_3527027_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_017337691.1\|3527007_3527403_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_017337692.1\|3527399_3528203_+	phage antirepressor KilAC domain-containing protein	K4IBS6	Acinetobacter_phage	3.2e-31	42.2
WP_031318641.1\|3528244_3528670_-	hypothetical protein	A0A2H4JAJ5	uncultured_Caudovirales_phage	2.1e-05	41.4
WP_017337694.1\|3528769_3529015_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_017337695.1\|3529082_3529505_+	phage regulatory CII family protein	NA	NA	NA	NA
WP_144425236.1\|3529525_3530032_+	hypothetical protein	NA	NA	NA	NA
WP_017337697.1\|3530031_3530361_+	hypothetical protein	A0A2H4J5Q4	uncultured_Caudovirales_phage	2.8e-10	46.0
WP_017337698.1\|3530357_3530579_+	hypothetical protein	A0A1W6JTF8	Pseudomonas_phage	7.2e-18	71.9
WP_017337699.1\|3530582_3531389_+	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	4.4e-41	59.3
WP_031318642.1\|3531372_3532176_+	ATP-binding protein	A0A1W6JTD8	Pseudomonas_phage	6.8e-74	54.5
WP_017337701.1\|3532172_3533543_+	AAA family ATPase	A0A1W6JTB3	Pseudomonas_phage	2.5e-169	66.2
WP_031318644.1\|3533539_3533830_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	5.2e-24	59.1
WP_017337703.1\|3533826_3534216_+	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	2.1e-41	61.7
WP_144425237.1\|3534356_3534551_+	hypothetical protein	NA	NA	NA	NA
WP_017337704.1\|3535163_3535481_+	hypothetical protein	NA	NA	NA	NA
WP_144425238.1\|3535477_3535717_+	hypothetical protein	NA	NA	NA	NA
WP_031318646.1\|3535700_3535895_+	hypothetical protein	NA	NA	NA	NA
WP_017337706.1\|3535904_3536243_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	1.8e-20	49.4
WP_017337707.1\|3536426_3536912_+\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	6.8e-21	49.3
WP_017337708.1\|3536913_3538605_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	2.3e-220	74.1
WP_017337709.1\|3538615_3539827_+\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	1.2e-178	75.3
WP_017337710.1\|3539810_3540455_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	1.6e-89	76.6
WP_017337711.1\|3540451_3541660_+\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	2.3e-166	75.4
WP_017337712.1\|3541709_3541901_+	hypothetical protein	A0A2H4JG33	uncultured_Caudovirales_phage	4.2e-06	47.5
WP_017337713.1\|3541900_3542209_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	2.6e-34	73.5
WP_017337714.1\|3542218_3542629_+\|head,tail	head-tail adaptor protein	U5P0R0	Shigella_phage	8.6e-17	39.4
WP_017337715.1\|3542621_3543143_+	hypothetical protein	U5P416	Shigella_phage	3.9e-06	27.4
WP_017337716.1\|3543166_3543757_+	hypothetical protein	B5TK65	Pseudomonas_phage	3.2e-57	53.6
WP_017337717.1\|3543753_3543960_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.3e-16	66.2
WP_017337718.1\|3543959_3545456_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	6.9e-229	79.9
WP_017337719.1\|3545516_3545864_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	9.5e-41	69.6
WP_017337720.1\|3545860_3546157_+\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	9.9e-39	85.6
WP_017337721.1\|3546287_3548345_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	2.2e-116	50.7
WP_017337722.1\|3548345_3549599_+	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	9.2e-110	49.0
WP_017337723.1\|3549602_3550718_+	hypothetical protein	B5TK72	Pseudomonas_phage	1.1e-117	62.5
WP_017337724.1\|3550714_3551224_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	3.4e-55	63.6
WP_017337725.1\|3551220_3551619_+	phage GP46 family protein	B5TK74	Pseudomonas_phage	7.3e-45	65.2
WP_017337726.1\|3551608_3552652_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	1.8e-135	69.7
WP_017337727.1\|3552642_3553242_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	2.0e-86	75.4
WP_017337728.1\|3553252_3554308_+	hypothetical protein	B5TK77	Pseudomonas_phage	2.8e-19	51.4
WP_031318653.1\|3554309_3554753_+\|tail	tail fiber assembly protein	A0A2P1JUG3	Erwinia_phage	4.3e-14	45.7
WP_017337730.1\|3554807_3555233_+	cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	3.7e-63	76.6
WP_017337731.1\|3555239_3555572_-	hypothetical protein	A0A2H4IZV2	uncultured_Caudovirales_phage	6.8e-12	45.7
WP_144425239.1\|3555781_3556465_+	hypothetical protein	NA	NA	NA	NA
WP_017337733.1\|3556560_3556770_-	hypothetical protein	A0A1B0VP78	Pseudomonas_phage	4.0e-10	52.3
3557714:3557764	attR	NA	NA	NA	NA

DBSCAN-SWA_7

5629351 : 5635616

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031319020.1\|5629351_5629744_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.7e-54	80.6
WP_017339578.1\|5629745_5630108_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	4.4e-41	69.2
WP_017339579.1\|5630107_5630401_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.0e-32	71.7
WP_017339580.1\|5630397_5630733_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.7e-45	80.2
WP_017339581.1\|5630729_5631731_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.1e-166	86.0
WP_017339582.1\|5631821_5632823_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_017339583.1\|5632940_5634335_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_017339584.1\|5634335_5635616_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.7e-99	53.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010945

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection