CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015506	Bacillus oceanisediminis 2691 chromosome, complete genome	3 crisprs	csa3,DEDDh,DinG,WYL,RT,cas3	0	8	7	0
NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	0 crisprs	RT,csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015506_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015506_1

900128-900462

Orphan

Consensus_repeat	Method
GAAGCNCTCATGAAGCCGAAAAA	CRT

6 spacers

The CRISPR arrays of NZ_CP015506_1

>merge|NZ_CP015506|1|900128-900462|CRT
GGATCGCCGATGAAGCCGAAAAAGGCACGAGAGGCAGAAAAATGGTCGCTATGAAGCTCTCATGAAGCCGAAAAAAGAGCCAGAGGCAGAAGAATGGTCGCCATGAAGCTCTCATGAAGCCGAAAAAGGAGCCAGAGCCAGAAGAATGGTAGTCATGAAGCCTTCATGAAGCCGAAAAAGGCATCTGAGCCAGAAAAATGGTCGCCATGAAGCTCTCATGAAGCCGAAAAAGGAGCCAGAGGCAGAAGAATGGTCTCCATGAATCGCCGATGAAGCCGAAAAAGGCATCTGAGCCAGAAAAATGGTCGCCATGAAGCTCTCATGAAGCCGAAAAA

>NZ_CP015506|1|1|900128-900462|CRT
GGATCGCCGATGAAGCCGAAAAA	GGCACGAGAGGCAGAAAAATGGTCGCTAT
GAAGCTCTCATGAAGCCGAAAAA	AGAGCCAGAGGCAGAAGAATGGTCGCCAT
GAAGCTCTCATGAAGCCGAAAAA	GGAGCCAGAGCCAGAAGA
ATGGTAGTCATGAAGCCTTCATG	AAGCCGAAAAAGGCATCTGAGCCAGAAAAATGGTCGCCAT
GAAGCTCTCATGAAGCCGAAAAA	GGAGCCAGAGGCAGAAGAATGGTCTCCAT
GAATCGCCGATGAAGCCGAAAAA	GGCATCTGAGCCAGAAAAATGGTCGCCAT
GAAGCTCTCATGAAGCCGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015506.1\|WP_019379367.1\|891083_891332_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019379355.1\|902547_904161_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173843
NZ_CP015506.1\|WP_019379353.1\|904650_905022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019379363.1\|893045_893498_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176854
NZ_CP015506.1\|WP_009335104.1\|893538_894876_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP015506.1\|WP_019379361.1\|895768_896995_+\|DUF819-domain-containing-protein	unknown	unknown	gnl\|CDD\|227792
NZ_CP015506.1\|WP_019379356.1\|900551_902036_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341286
NZ_CP015506.1\|WP_157888524.1\|906129_906303_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019379364.1\|892704_893049_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133382
NZ_CP015506.1\|WP_019379365.1\|891530_892460_+\|iron-hydroxamate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238558
NZ_CP015506.1\|WP_019379368.1\|890817_890997_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225375
NZ_CP015506.1\|WP_009335094.1\|905185_905947_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP015506.1\|WP_019379362.1\|894872_895562_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP015506.1\|WP_019379352.1\|905993_906137_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019379358.1\|898614_899493_-\|aminoglycoside-6-adenylyltransferase	unknown	unknown	gnl\|CDD\|377357
NZ_CP015506.1\|WP_009335098.1\|902065_902455_-\|MerR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|133403
NZ_CP015506.1\|WP_009335096.1\|904258_904516_-\|DUF3949-domain-containing-protein	unknown	unknown	gnl\|CDD\|315735
NZ_CP015506.1\|WP_009335093.1\|906472_907027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019379359.1\|897280_898588_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP015506.1\|WP_019379349.1\|907443_910503_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911

Protein	Function_ID	Function_description	E-value
NZ_CP015506.1\|WP_019379355.1\|902547_904161_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173843	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.	1.85098e-73
NZ_CP015506.1\|WP_019379363.1\|893045_893498_+\|SRPBCC-family-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.44948e-05
NZ_CP015506.1\|WP_009335104.1\|893538_894876_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	9.14007e-28
NZ_CP015506.1\|WP_019379361.1\|895768_896995_+\|DUF819-domain-containing-protein	gnl\|CDD\|227792	COG5505, COG5505, Predicted integral membrane protein [Function unknown].	2.6961e-103
NZ_CP015506.1\|WP_019379356.1\|900551_902036_-\|AMP-binding-protein	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	3.51061e-167
NZ_CP015506.1\|WP_019379364.1\|892704_893049_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	1.28696e-23
NZ_CP015506.1\|WP_019379365.1\|891530_892460_+\|iron-hydroxamate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.2099e-74
NZ_CP015506.1\|WP_019379368.1\|890817_890997_+\|hypothetical-protein	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	3.16353e-07
NZ_CP015506.1\|WP_009335094.1\|905185_905947_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	6.79643e-48
NZ_CP015506.1\|WP_019379362.1\|894872_895562_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.32519e-103
NZ_CP015506.1\|WP_019379358.1\|898614_899493_-\|aminoglycoside-6-adenylyltransferase	gnl\|CDD\|377357	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics.	2.93097e-164
NZ_CP015506.1\|WP_009335098.1\|902065_902455_-\|MerR-family-DNA-binding-protein	gnl\|CDD\|133403	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.32305e-30
NZ_CP015506.1\|WP_009335096.1\|904258_904516_-\|DUF3949-domain-containing-protein	gnl\|CDD\|315735	pfam13133, DUF3949, Protein of unknown function (DUF3949). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 69 and 87 amino acids in length.	2.56944e-11
NZ_CP015506.1\|WP_019379359.1\|897280_898588_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	1.30884e-143
NZ_CP015506.1\|WP_019379349.1\|907443_910503_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0

>NZ_CP015506.1|WP_019379358.1|898614_899493_-|aminoglycoside-6-adenylyltransferase
MKSRTETEMMNLILSTAREDERVRAVILNGSRANPNVRKDIFQDYDIVYIVREMESFTCDHSWVDVFGERVMMQMPEEKVLPPADGHGRFPYLMQFMDGNRIDLTLIPADEMDELLEPDSLSVLLLDKDGLIGYLPPASDRDYLIKKPDAQEFADLCNEFWWITMNISKGLWRRELTYAMFMHEQINRNVLITMLEWKVGITDDFTKSAGKAGKYLPDFLPDEVWEQFESTYSDADFHHIWEALFTMCSLFRETAVEVAEKLGFEYPFEDDKRVTAFLKHVRILPANASSIY
>NZ_CP015506.1|WP_019379359.1|897280_898588_+|uracil/xanthine-transporter
MDKRFGTVTIFSSVQWLFFIFANTVMVPISIGTVFGLPGETIAMMLRASLIFTGLATIFQGWKGHRYPLMEGHSGLLWGVILNLGLSASSLGMSYTEIGGGIATGVLLASAVTLILAAFNGISLLKSIFSPMVMSVYLFLLTFQLIFIFFKGMMKVSEQGTIDVPITLYSFALVIFVSLLKLKGNAVISNFSILIGLLAGWIGYDLLFAGQAMQGTASGDVSFTLFPLGQPNLEIGIVAVAFFASLMNLSNTVASISSSDRLFKKESGKREYRGSIFITAVFTVMGSGFGLVPYTPFTSSIGFLQSTRILMRTPFFIGGALLTVIGLIPHLGSWLAGMPVTVGNAVLFVAYLQLFGTAFNSLSGKVFNSDTIFRLAAPVLIGISLMNTPAAVFAELPVLIQPFLSNGLLMGVLISILLEKMVNWSAFEQLELKNN
>NZ_CP015506.1|WP_019379361.1|895768_896995_+|DUF819-domain-containing-protein
MEQTLIKADDYVTLWGIIVVWASASIYLEQRYSWAAKISGAIVALIGAIILSNTGIIPTASPVYDAVWTFIIPLAIPLLLFHVKIKRIWQESGRLLIIFLISSIGTVAGVIISFFLLKDHIPVLDKLGAMLSASYIGGGVNFAAMAAKFKTPGEMVSAAVVADNLMMAIYFVVLMMVPAIGFFRRRFKTPHVDQVESGSIGEEGKTLAESFWKRKDISLKDIALSVGTAFLLVIVSFKVAEFLDSAIPSGDDVSFFINLVNGLFGDKYLMLTTLTFLVLAMFPRYFESINGSQEIGTFLIYLFFVVIGIPASIPLIIENAPLLLVFVFIIVVVNLTVSLTAGKLLKYDLEEILLASNANVGGPTTAAAMAIAKGWKDLIGPILVVGTLGYIIGNYVGTALGLWFSGFM
>NZ_CP015506.1|WP_019379362.1|894872_895562_-|ABC-transporter-ATP-binding-protein
MIEVRELSHAFEIGKKEKKTVIPVLEDVSFSVEKGEIVTIVGRSGSGKSTLLNIISGFIKPKHGEVWIQGEKVSDYNEGKFADFRLANLGFIFQSFQLIPSMTAYQNVELPLILKGMTEKERQQKTEETLKRVGLIEYKDHYPSELSGGQQQRVSIARALVVNPPLILADEPTGSLDSETENELLQFIQELNRDLGITFLIITHDEKVAAIGHKTIEITDGRVMEGVLA
>NZ_CP015506.1|WP_009335104.1|893538_894876_-|ABC-transporter-permease
MNLKDQFRFVRQNMKKNKTRLFMTILATAIGCTFLIVLASVGFGLHKSIIQDVMEDSLVTEVQVHGKEAGEGNFQGIKDEDIKHFQEITGVKAVTRRQSLQQSPIFKTGDYTSQSEAVSAYFPEEVKAGFELSEGRLPEKGNEVVVGSSFADGLSLEPKEGENAFNEDGTIKEEYAYKGELVGKTIEMEVIKMEDGKEIKKSIPLTITGVTKKPSKEWMQIRTVFISEDIFKEVEAFTGTPAGSPEQVEGASEDTGRIYDTVSLYAKDVEAVTGINDQLKDGNYMVYSIVNEMKQINMVFTILKIGLLFIGTIALIIASIGIYNTMTMAVTERAPDIGIMKAIGAHPKTIKRIFVLESSYIGLLGALFGTIVAYGISYAVNLALPLVLERVFEEAPPEGLMLSYIPWSLTLISVAICLTVTIFSGWRPAKRATQVDVLKAMRREV
>NZ_CP015506.1|WP_019379363.1|893045_893498_+|SRPBCC-family-protein
MIQWKEEIMIERNIEKVWRLFSDQHIKKIMPKVEEHTLIEKREHEAGAKHRQTYREGKRQETYIVETLAYENAEDKKHKQIHFVLGKAFEITLSFTLVKIDDSHTRFIYEGENKGVNFVGRAMLKLGGDKNNLKVVEEFLQKVREEAFKL
>NZ_CP015506.1|WP_019379364.1|892704_893049_+|MerR-family-transcriptional-regulator
MYKISEFSEMTGLTKETLRYYAEVKLLEPAFIDSKNNYRYYDDGSYFLAILLIKLRRLGFTIQEMISVMEDESFANLEALLLQKRKLIEKQMEELQGQIDEIDAFLESGKEEES
>NZ_CP015506.1|WP_019379365.1|891530_892460_+|iron-hydroxamate-ABC-transporter-substrate-binding-protein
MKKTKFILIVITLLLACTLSACGESSGKTSGASADSGTRTYHGEDGDVQVPAKPKRVAVLAHIYVGNVLKLGITPVAVNEWVKGNKFFGDKLENTEVVAEGSIEKLIELEPDLIIAFSSDKNLKKYSEIAPTVALTNTEYDYLQQHIEIGKIVGKENEAEKWVEEWTEKAKEEKEKVRAAIGEDVTVTVLETMGKETYIYGKNWGRGTEIIYQALGIQAPDKVEKDVFGPGYKSISTELIPEYAGDIMFVGTGDETGKGSFMDTSVWQEIPAVQNNKVIEFDSESFWFNDAISLENQLEFIVNELTKGK
>NZ_CP015506.1|WP_019379367.1|891083_891332_+|hypothetical-protein
MYFGAGTEFIDRLRDGNLKIYFSAGAQEKRFMVEDVKELAERLTLLKDSRLDIMLDIAEGEKNHISVVPAALSRSLRFVLKP
>NZ_CP015506.1|WP_019379368.1|890817_890997_+|hypothetical-protein
MDSPPEFTFEITEDSPEAMAKERGSGKFLQFIEQELKPKVNEMFEADPARHIFFGHSLG
>NZ_CP015506.1|WP_019379356.1|900551_902036_-|AMP-binding-protein
MGATIHGVLERNARKFPEKDAFITASNRLTYADMNRTCNRLARYLQGEGIRRGDPIAVMSRNNEHFFYAFFACMKIGAIPMPMNVRLTPKELGAIFQNASAAGVLYEDELTETVTALKENLNFYVSIQDAVEASAHLSDGNLNVPIDSRDVCEILFTSGTTGTPKGVVFNHERILSIAAAVSVNFSLSHSDSLLTLMPLSHSAPLNTFFMSGFYCGASHVIGDFTPKGFLNWIQQEKTTFSFAAPVAYLLAAKDPDLASYDLSSMRVFAYGGGPLALASYHHVKKAFQNENFYQVYGLTEAGPNGILLYPEEHLEKAGSIGKNPTVNMEIRVVRPDGTDTAPNEYGEILLTGDSLMLGYDNNPDETNAAMKDGWLYTGDIAYRDKDGYFYIVDRKKDVIISGGVNIYPREVEEVLAKHDAVLESCVVGVPHEEWGETVKAVVVLKGDASEEELRAFAAEHLAEFKCPRIYSFVDELPRNASGKILKQQVKLVHA
>NZ_CP015506.1|WP_009335098.1|902065_902455_-|MerR-family-DNA-binding-protein
MTVEKIFTISELATMFDISSRTIRYYEEIGMLTSENRDSMTKQRSYTNRERRRLKMILRGKKLGFSLQEIKEMIDLYELNPEGEAEKSRIIAFADSKLKEIEEQIMQLQMLREDILTYKEKYENSRVKT
>NZ_CP015506.1|WP_019379355.1|902547_904161_+|acyl-CoA-dehydrogenase-family-protein
MTITSQDQQIRGKNSYTFDEFLEKRNNLDWYKDDPFLQKALKKYAGSQYEQIHIELQHFSPAVSSRWSTLAERAARPEVRPYLLHFDAFNHRIDRVIRPMETHQLEKEVFSTGLFSSKMPAWESFAKRMLIHQLGEAGVACPLTCTIGLIALLEQYPNEDIPELEQILQHTKEGLGGDFAIGAQFMTEIQGGSDLPANVLEAVPDGKIYRLYGNKFFCSVAHADYSVVTAKISGTDKVSTFIVPSWLPGDKEKEKRNGYEINRIKWKMGTAELPTGEFQYNGALAYPVGPAGKGVAVAVGIVLTLSRLEIGIACAGFMLRAAREASLYGNFRTVFGKKVKDYPLSARTLKKIENAAHRTAAGAFKIYDQFLLLDQPLNAGIPVDQPIELRKQLFNLRELVLLQKICATNEGAEVLRDAISVFAGHGVMEEFSSLPRIFRDIVVNEQWEGPRNLLLTQIYRDIQRVTDWYPPADFVANVLEGASQATIDRFAEQLTDLLQRPVCGGVSEASMEAAEEWDVFCDSIFKAYQKIALEELQ
>NZ_CP015506.1|WP_009335096.1|904258_904516_-|DUF3949-domain-containing-protein
MMLLNIFWGILGLYVLLSLLILPMQYRYLTAIKKEEAKNKAKGKRQGEMYDNMRAGELVLHENIQGNPVFFLANFLASVIYRIKH
>NZ_CP015506.1|WP_019379353.1|904650_905022_+|hypothetical-protein
MITKEMLVRFDELNRRKKDLEAELDKLKDMFHQYFDTAVGQNEKGEVKIDSYKLQRQIRRTEKFDPAPTVSKLEELNLLDLIQKRPDEGKIKSAVDLGLIKESDLEGCRISKTTAALLIKKLD
>NZ_CP015506.1|WP_009335094.1|905185_905947_+|MerR-family-transcriptional-regulator
MEYTVQKLAQMAGVSSRTLRYYDEIGILKPARTNSSGYRIYGQQEVDRLQQILFYRELGISLDQIKEIISAPAFDAADALKEHREKLLEKRKQLDLLITNVEKTIASAEGRTTMSDKEKFEGFKKKMIEDNEEQYGKEIREKYGDETVDKSNAKLMNMTQEEHEAVTKLAEEVNTALAEAMQTGDPAGELAQKAADLHKQWITFYWSEYSKEAHAGLAEMYVADERFKAYYDKIRPGAAEFLRDAINIYTGQQ
>NZ_CP015506.1|WP_019379352.1|905993_906137_-|hypothetical-protein
MDEAAHIWYDGAFNGDVDAFYWANGAIIMQNSAMIHQNNAIISSSGA
>NZ_CP015506.1|WP_157888524.1|906129_906303_-|hypothetical-protein
MAQLQVMHTHLIWRKFGSAHLLDEAAHIWHDGAFNGDVDAFYWANGTITLRVGAHIG
>NZ_CP015506.1|WP_009335093.1|906472_907027_+|hypothetical-protein
MSRIPSYKDEQNLREKLRDVSFEHWLNEDLFSFNWWLLLAASILPFFIWWRLVDKGRFFEILAFGLLCAIFACFLDVVGLNFILWGYPDKLFHFIPPLVPADFVVIPISGMLIYQYFNTWKSYAAAAVGLGILFAYIFEPLFSFLNMFVLINWKHTYSFIGFIIFFLGVRLLMVSLKRAAEKIK
>NZ_CP015506.1|WP_019379349.1|907443_910503_-|efflux-RND-transporter-permease-subunit
MKLLKMIVQRKILVALMTVLILAIGSFSIIELDKELMPPVTMDGAYVEVNAGEMAAIEVERSITNPLEQQIRGIEGVESVDSTSAIGRSSLQITFEQGRGDELFKEVETAANAAKGENAAITDVTSGQYGTTQSYEFYMDVSGGSMEDMTAFAKKVLEPRLEALPEVRDVSLAGVQEHEVIIELDRSKLAEKGLDSTAVIGAIQQVNSEATLGELSRDASSPSLRWNTKLENVEDVQNIKIPSPNGFVDLKDVADVQFQPIESSSFVWKNGTKDFIFVQVGRAANATQIEMAAAVRDEVKNIREDGLVKGFELNEMVAQADYVQESIDGVTGNILTGGVIAIAILLIFLRNVRATFIIGLSIPTSILLTFTAMWVFDYSFNILTLIGLGLGIGMMVDSSIVIIESIYRKKEQGLGRLESVLEGTKEVSSAVIASMLTTIVVFLPIGLIGGDVGTFMIMLSAVVAITLISSVIVSFTLIPSLSEKLLKLRKPKKERKEGPIMRLYSRIVAWTIRKKRYSFAVIAIIFLMFAGSLTLVTKIPMTIMPDMFNRYTELMVDLETGISVEDKEDIAQGINQKLQSIEDVESNYVMDSGGMFYTIINMTKGDDISREQKDVNEDIMKQLRSLSDSLPVKNVQSAMSAGGGSPVQVNITGENFADLQKLTGDFSEELEKIDGIVGVTNSMERTSEEQVVVLKEEAIETAGLTQLQIRQFIEQAFMEMPVGEMSMNEENVPLALKWAEKTDSRSDLLDLKVPTAQGEKALSSFIELKSVDTPNEISHHDGERFISISADIEGKDLGAVNRDVQKLINDFDAPAGYSVAAAGDLEQQQELIMDMVFVLAIAIFLVYLVMAVQFNHLGHPLIVMSVIPMTIVGVILGLFLTQMELSVMSGMGIVMLIGIVLNNAILLIDRTNQLRLEGFSVEVALLEAGKNRIRPIFMTTLTTVGGMLPLALASGTSGNYQAPMATVIISGLLFATFITLLLIPAVYRLFTTSSLRFGWLKKKQEKKSSDVKVIPETVN

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Crispr_ID: NZ_CP015506_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015506_2

2787789-2788430

Orphan

Consensus_repeat	Method
GGATTAACTACCATTTTTCCNNNNG	CRT

12 spacers

The CRISPR arrays of NZ_CP015506_2

>merge|NZ_CP015506|2|2787789-2788430|CRT
GATTAACTACCGTTTTTTCTAAGGCAGCCTCCTTTCGGCTTTATTCATTCGGATTAACTACCATTTTCCCTATGGCCGATCGATTTTAGGCGTTACTCGCTCGGATTAACTACCATTTTTCCTATGGCAGCTCTCTTTTCGGCTTCATTCATTAGGATTAACTACCATTTTTCCAATGGTAGCTCCCTTTTCGTCGTTATTCATTAGGATTAAGTACCGTTTTTCTATGGCAGCTCTCTTTTCGTAGTTATTCACCCGGATTAACTACCATTTTTCCTGATGCCTCTCTTTTTTCGGTGTTATTCATTCGGATTAACTACCATTTTTCCTATTGTAGCTCCCTTTCGTCGTTATTCATTCGGTTTAACTACCGTTTTTTTATGGCAGCTCTCTTTTCGTCGTTATTCACCCGGATTAACTACCATTTTTCCTGATGCCTCTCTTTTTTGGTCGTTATTCATCTGGATTAACTACCATTTTTCCTGATGCCTCTCTTTTTGGTCGTTATTCATCTGGATTAACTACCATTTTTCCTAAGACAGCTCTCTTTTCGGCTTTATTCACTCGGATTAACTACCATTTTTCCTAAGGCAGCTCTCTTTTCGTCGTTATTCACCCGGATTAACTACCATTTACTCAAGG

>NZ_CP015506|2|2|2787789-2788430|CRT
GATTAACTACCGTTTTTTCTAAGG	CAGCCTCCTTTCGGCTTTATTCATTCG
GATTAACTACCATTTTCCCTATGG	CCGATCGATTTTAGGCGTTACTCGCTCG
GATTAACTACCATTTTTCCTATGG	CAGCTCTCTTTTCGGCTTCATTCATTAG
GATTAACTACCATTTTTCCAATGG	TAGCTCCCTTTTCGTCGTTATTCATTAG
GATTAAGTACCGTTTTTCTATGGC	AGCTCTCTTTTCGTAGTTATTCACCCG
GATTAACTACCATTTTTCCTGATG	CCTCTCTTTTTTCGGTGTTATTCATTCG
GATTAACTACCATTTTTCCTATTG	TAGCTCCCTTTCGTCGTTATTCATTC
GGTTTAACTACCGTTTTTTTATGG	CAGCTCTCTTTTCGTCGTTATTCACCC
GGATTAACTACCATTTTTCCTGAT	GCCTCTCTTTTTTGGTCGTTATTCATCT
GGATTAACTACCATTTTTCCTGAT	GCCTCTCTTTTTGGTCGTTATTCATCT
GGATTAACTACCATTTTTCCTAAG	ACAGCTCTCTTTTCGGCTTTATTCACTC
GGATTAACTACCATTTTTCCTAAG	GCAGCTCTCTTTTCGTCGTTATTCACCC
GGATTAACTACCATTTACTCAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015506.1\|WP_019381343.1\|2784451_2785162_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200580
NZ_CP015506.1\|WP_009334313.1\|2788623_2790984_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NZ_CP015506.1\|WP_009334308.1\|2794550_2794868_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239315
NZ_CP015506.1\|WP_009334311.1\|2792873_2793725_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP015506.1\|WP_019381340.1\|2786165_2786675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_009334307.1\|2795342_2796422_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187759
NZ_CP015506.1\|WP_019381335.1\|2798910_2800218_-\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|377757
NZ_CP015506.1\|WP_162272004.1\|2782349_2782547_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019381339.1\|2791244_2792507_-\|OFA-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340911
NZ_CP015506.1\|WP_019381345.1\|2781515_2782247_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP015506.1\|WP_009334310.1\|2793989_2794163_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
NZ_CP015506.1\|WP_019381344.1\|2783102_2783801_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP015506.1\|WP_009334322.1\|2780924_2781230_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|224357
NZ_CP015506.1\|WP_009334314.1\|2786782_2787664_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NZ_CP015506.1\|WP_009334305.1\|2797916_2798924_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP015506.1\|WP_009334320.1\|2782556_2783078_-\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252
NZ_CP015506.1\|WP_009334309.1\|2794355_2794523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_009334306.1\|2796523_2797783_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP015506.1\|WP_019381341.1\|2785643_2786120_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_009334318.1\|2784145_2784421_+\|YqhV-family-protein	unknown	unknown	gnl\|CDD\|378514

Protein	Function_ID	Function_description	E-value
NZ_CP015506.1\|WP_019381343.1\|2784451_2785162_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200580	cd10956, CE4_BH1302_like, Putative catalytic NodB homology domain of uncharacterized BH1302 protein from Bacillus halodurans and its bacterial homologs. This family is represented by a putative polysaccharide deacetylase BH1302 from Bacillus halodurans. Although its biological function is unknown, BH1302 shows high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Both BH1302 and SpPgdA belong to the carbohydrate esterase 4 (CE4) superfamily. This family also includes many uncharacterized bacterial polysaccharide deacetylases.	1.41993e-111
NZ_CP015506.1\|WP_009334313.1\|2788623_2790984_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NZ_CP015506.1\|WP_009334308.1\|2794550_2794868_+\|redoxin-domain-containing-protein	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	6.82847e-05
NZ_CP015506.1\|WP_009334318.1\|2784145_2784421_+\|YqhV-family-protein	gnl\|CDD\|378514	pfam10942, DUF2619, Protein of unknown function (DUF2619). This bacterial family of proteins has no known function.	9.70684e-22
NZ_CP015506.1\|WP_009334307.1\|2795342_2796422_-\|hypothetical-protein	gnl\|CDD\|187759	cd09319, TDT_like_1, The Tellurite-resistance/Dicarboxylate Transporter (TDT) family. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms, but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease, the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates, and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants, the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1), which is preferentially expressed in guard cells, encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane alpha-helical spanners (TMSs).	1.68802e-10
NZ_CP015506.1\|WP_019381335.1\|2798910_2800218_-\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|377757	pfam07005, DUF1537, Putative sugar-binding N-terminal domain. This conserved region is found in proteins of unknown function in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini interacting to produce an interacting surface into which a threonate-ADPcomplex is bound, suggesting that a sugar binding site is on the N-terminal domain here, and a nucleotide binding site is in the C-terminal domain (manuscript in preparation). There is a critical motif, DDXTG, at approximately residues 22-25.	8.2365e-79
NZ_CP015506.1\|WP_019381339.1\|2791244_2792507_-\|OFA-family-MFS-transporter	gnl\|CDD\|340911	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Oxalobacter formigenes oxalate:formate antiporter (OFA or OxlT) and similar proteins. O. formigenes, a commensal found in the gut of animals and humans, plays an important role in clearing dietary oxalate from the intestinal tract, which is carried out by OFA/OxlT, an anion transporter that facilitates the exchange of divalent oxalate with monovalent formate, the product of oxalate decarboxylation. This exchange generates an electrochemical proton gradient and is the source of energy for ATP synthesis in this cell. The OFA-like subfamily belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.96696e-116
NZ_CP015506.1\|WP_019381345.1\|2781515_2782247_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	7.33549e-76
NZ_CP015506.1\|WP_009334310.1\|2793989_2794163_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	5.59756e-09
NZ_CP015506.1\|WP_019381344.1\|2783102_2783801_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.59231e-29
NZ_CP015506.1\|WP_009334322.1\|2780924_2781230_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|224357	COG1440, CelA, Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism].	1.27981e-45
NZ_CP015506.1\|WP_009334314.1\|2786782_2787664_-\|SPOR-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	2.75945e-12
NZ_CP015506.1\|WP_009334320.1\|2782556_2783078_-\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	2.36538e-74
NZ_CP015506.1\|WP_009334306.1\|2796523_2797783_-\|PAS-domain-S-box-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	4.59145e-60
NZ_CP015506.1\|WP_009334305.1\|2797916_2798924_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	1.02413e-176
NZ_CP015506.1\|WP_009334311.1\|2792873_2793725_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	3.0814e-128

>NZ_CP015506.1|WP_009334314.1|2786782_2787664_-|SPOR-domain-containing-protein
MKKIKQAIAAGVISLAVIFTGGAVFADHSGDKEIAVVKKGDTLYSLAKKHHMSVAQISDLNDLEGTTIYPGQRLILSGEEAGYHKIIAGSFSKKKNAEKRAALLKKKEIPAAIGTAVIDGKTYYRVQAGAFKDKKNAVKQLEAVKKAGIKDAFILSKEELHIFGLKPGDAFAEIVSRMGMPKKTETQLNIKSLYYQSDGAGLRVTLNKKDGTIGSLAVYPEYLSPRMFPALPFTKDEVVKMYGDSDKTKTVTCYESAKCEELTYQLDHLELKARIDRDQATVQFLEITDLNYR
>NZ_CP015506.1|WP_019381340.1|2786165_2786675_-|hypothetical-protein
MEQKKWTPLKEMDGSNTLVWGDKPEVLPEQAFISLTRGKGLNLIQLFINQVLTLLVMNQMRKAPGLIYAELNGELKKWKGNGQTMTVWDGKLMPKFRNRNTHAFAMKFFTWIIHRKNTKNYYLTYSANETIPSVAEVKDILRQFGKFYDGGVLARKASPPGFGEEKKSS
>NZ_CP015506.1|WP_019381341.1|2785643_2786120_+|hypothetical-protein
MGRKFEKNLLRLLFIFVIMSFFNLIRKPPMKEWLIIFFLKSYIATFLDNLLVRKGYLKYPVNLFKTFDVSVLFSYIIFPITCVYFNQLTMKNRVKGILLKSLIFSAPSAMAEHFLEKYTQLIRYKKSWNSYYSFVTIMATFLMTRGIMGLIRKSSENQ
>NZ_CP015506.1|WP_019381343.1|2784451_2785162_-|polysaccharide-deacetylase-family-protein
MKKLLKISISIILILGICFLLFEISKSRNFQFFGGLVNKAETEEKVAALTFDDGPGVNTEEILDILREEDIKATFYLTGQEIEQHMDDAKRIAGEGHEIGNHSYSHTRMVLKSPSFIKDEIEKTDDLIRQTGYEGEIHFRPPYGKKLFFLPYYLSKHERKTILWNVEPESHPEIEGDANKITEHVAENIEPGSIILLHVMYESREESLKSVKKIISSLKEQGYHMTTVSELLKHQK
>NZ_CP015506.1|WP_009334318.1|2784145_2784421_+|YqhV-family-protein
MFIFLDKAILGMAILRLISGSIEIFVALLIIKMNDIEKALVVNSSLALIGPPVLLLTTVIGLTGMADKVSLSKILWVLCGVGCILYGVKGN
>NZ_CP015506.1|WP_019381344.1|2783102_2783801_-|methyltransferase-domain-containing-protein
MDKAILHIDDLLEMLDGLLREPTAFWEKFYEDRDKEVPFFIAKGPDENLYEYVQNGLRPGKILEIGCGPGRNAIFLAKNGAQVDAIDFSKKAIKWAAERAKEAQADINFKCVSFFDFHFEPHTYDLIYDSGMFHHLPPHRRLTYLEIIKAALKPGGKFGLVCFNTDGALPTPDWEVYRSGSLKGGIGYTEERLKAIFHNDFHFMEIRKMKKILQPSNLFGEDFLWACLMRLK
>NZ_CP015506.1|WP_009334320.1|2782556_2783078_-|GrpB-family-protein
MTRIVAVTPYNPDWPTLFKNEAALLKKIFKTEILDIHHIGSTSIPGLAAKPVIDIMPIVNDIEKVDRLNTEMISLGYEPRGENGLPGRRYFEKGGNQRTHHVHIYEKGNPDITRHLAFRDYLRLNGEEAKQYGALKMELAKQYPFNIEAYIKGKEALVRKIEMKAIKWHGALC
>NZ_CP015506.1|WP_162272004.1|2782349_2782547_+|hypothetical-protein
MRSWFGQRDLDFGLCCPNACLVRTPSPAIWPLLSECVPDSDEQAAVSLFAVRLDIGPHFFKLIDE
>NZ_CP015506.1|WP_019381345.1|2781515_2782247_+|GntR-family-transcriptional-regulator
MKDGFTEDSALHLKVKESILELIRNGAFKPDTKLPTEAEFCEKYGVSRTTIRTALQQLSTEGHIYRQQGRGTFVSSNKVKQRLTSTVENFSKQMAMQGKNPLIKVINLEVIPADPFLADVFELSEGDPVNVLERIRYADDEPLQYEKAFLPWKKTPSLNRQACEKSLYNLLQTQYNLKIKKTIEHLEISLPEEEISNLLKIKPETPCFALETYAHIEDGSLIEYSKTMFRGDYAHFIIERNYE
>NZ_CP015506.1|WP_009334322.1|2780924_2781230_-|PTS-sugar-transporter-subunit-IIB
MNILLCCSAGMSTSLLVTKMQASAESQGIDCKIWAVGNGEVRNHIDSADVLLLGPQIRFMTEQLKKEAGGRIPVAPINPMHYGLCNGEEVLKQAMSLIKGE
>NZ_CP015506.1|WP_009334313.1|2788623_2790984_-|FdhF/YdeP-family-oxidoreductase
MGKTKHPGPQNKKAMPDPKHWVSPIPFGLGKIKPKHMRDTAKILWENKDNIGYAANILTKGVCDGCALGVSGLYDQTLKGPHVCTTRLNVLRLNTAGAIKPEILHADIDELRKYDSTELRKLGRIPYPMIRRKGERTFSRITWDDAMNMIAEKMKVLDPKQYAFYLTSRGITNESYYVAGKVARFLGTNHIDNASRICHSPSKTALKRSIGVGASTANYLDWIGTDVLLFWGSVASNSSPVSSKYMLEAKKNGTKIIVVNPYREPAMDKYWIPSNPESALFGTKIADDFYQVNIGGDIAFMHGIMKHWFEMEKAERGSAINHKFVNEHVNGYEDLKKKVKEQSWEEIIKSSGVSKERIIELAELLANSKNAVYAWALGLTMHSFATDNISQVANLALLRGHLGRKHNGLMPFRGHSSVQGSGEMGADPFVLPGGDFYGDNFTRIQNLWGFELEKWQGDIVGVTLENILLPEDHERKIKLYYLSGGNFLETMPDPDFIEKALSELDIRVHQDIILNTSTLVDAKEAVIVLPAKTRYEQEGGGTSTSTERMVYFSPEIEGNKNKIEEAREEWKIYIDLAKRVKPETAHLVEFKNAQQIRDEIAVANPSYDGIQHLKKAGDVFQWGGAWLCEDGICPTPDGKGTLITVDIPDLGKKEGQFIVTSRRGKQFNSMVYKEVDPLNGAGRYDVLMNAEDGKDLSIAEGEGIVLYNGFGVFQGRAKFVDIARGNVEVHFPEGNFLLPRGRYEKFAGIPDYNITVTLEKADRYNARKDVEYNEKHIAEDEIDAPA
>NZ_CP015506.1|WP_019381339.1|2791244_2792507_-|OFA-family-MFS-transporter
MKKTKNRWLIAASAVGIHISIGSVYAWSNFTNPLIEQFGWTSKEVQLTFSLAILFLGLSAAFLGHFVEKHGPKKAGLLAAGFFGAGMLGAGLAVNMGSLPFLYITYGVLGGIGLGVGYIAPVSTLVKWFPDRRGFATGLAIMGFGFAAAVASPVMDGLIKSVGTANTFFILGAAYLIIMTLSSLYLERPPADWAPEGMKEKAAAGKIKIKQDLAQLTANEAVKTSRFYYLWIMLFINVTCGIAILSAAKPLAQESIGLTTAEAATLVGVLGIFNGLGRLAWASISDYIGRPNTYTIFFVSQIALFLLLPITKEAILFQIMLAIVYTMYGGGFSSIPAFIGDVFGTKQLGAIHGYILTAWAAAGLAGPMFAAWMKDSTGSYASSLTSFAGLFVIALIVSILIRFDIKKLRKQYEASERMAG
>NZ_CP015506.1|WP_009334311.1|2792873_2793725_-|glycerophosphodiester-phosphodiesterase
MKKRMISVIGAAVIGLNAFGGGAALAKDIHKDIVNVSHRGASAYAPEHTIASYDMGEKLHGDYIEIDLQMTKDGHLIAMHDVTLDRTTNGTGSVKDYTLNEIKQLDAGSWFNEKYPYASKAEYEGLKVPTLEEVFKKFGKNNSYYIETKSPDVYPGMEKELLRLVDKYKINKEKLLVQSFSSQSLKVMNELDPSIKLVQLISYKANAEITEAEIKEIKQYAMGIGPNHTYLNEEYVQKVVNSGLELHPYTVNDKERMKQLINWGVTGMFTNHPDLLHDVKKGR
>NZ_CP015506.1|WP_009334310.1|2793989_2794163_+|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MTTPSTAIKKLHHDIDALRKKMISVGKRKGLSHPETLMYSEELDKLIYKVQRSKFIH
>NZ_CP015506.1|WP_009334309.1|2794355_2794523_+|hypothetical-protein
MKKKFMILLGIVLLVLTACGKDQAQEAITLKDQTGNEVTFPQDKPSVFFFITTYT
>NZ_CP015506.1|WP_009334308.1|2794550_2794868_+|redoxin-domain-containing-protein
MHQNMDKLEGLDVNVYIVSNDQPEQQLELYNALEEKMGHSLPFVSDPEMQLIERADMKNGESAYRGYALMDTKGNIVFNKVNDHWGEEIDKTAEDIKKEYEGLSK
>NZ_CP015506.1|WP_009334307.1|2795342_2796422_-|hypothetical-protein
MIIVFYFILLGLLFIGAVFVIIRKKININTAAMAAVMAFGIVTQGVLLNFFGLSFFLGSIGKIISIADIALWMAILVSIGMTIYKGEFKKLHYINPINRFGIGTWVAGTSICGIMFCKQFGAGAEVQALAILNAGLWIIYIGISLIGFKELKDTSIGQQTHGVLLLTAVSTQSLVLLFNTVFADVPGFLNAALIFLGLLFYFISAWFILKRYAIRGWNIAKDWNNTNCIFHGALSISGLAMFKSGLVTQQAAAWFWLAVFLVFIVVEIIEIARAICRSLIYGLKEGIFTYDVTQWSRIFTFAMFFTFTFFIETPVQAVILNTGVWIILMLLIIELYLSVDSIRRKHVRIPLTSRKERSV
>NZ_CP015506.1|WP_009334306.1|2796523_2797783_-|PAS-domain-S-box-protein
MSKRTGQISLVLISVLFTSYQTIFSQETFFTFDFILFTCIAWFVGWQFDKSRYYAEKARASEKSHKLLLESLPVSVLIHKDFEILYANSTAVAELSSSDKGALIGRSLLDFIELDYMGRLQERYQYIKSEKQLLNNIEYKIKRFDGTTRFFEVSSLYVEFEGKEAILSIGTDISDKKEEQEKLLQKSEKLALLGQMAAGIAHEIRNPLTSIKGFVQLFKSNSQKDEYFDIVLSELDRINGIVGEFLVLAKPTADIFEKQDLTKLINEVILLSSTQSVLNNVEIAAENNLHAPMIHCEKNQLKQVFLNIIKNAIEAMPGGGELNIKVFKKSGNTISIQFIDQGVGISEDRISSLGEPFYTTKEKGTGLGLMICYKIIENHNGRLIVESKVGEGTKIEIELPYEGDSIHAEDDQNGNIVLI
>NZ_CP015506.1|WP_009334305.1|2797916_2798924_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MSQTKPVVGITMGDAAGVGPEIILKSLAEAEMYEISNPLVIGDRKILERAKSFVDSGLIIETVTAEQINEIPFKHGVVHCLDLDLLPEDLPIGQVSPEAGDAAFQYLAKAIEMAKENRIDAICTAPLNKEALQKGGHMYPGHTEILADLTDTKDYSMMLSAPNLRVIHVTTHVGIIDAVKMINPERVYHVLKLAHDTLKKAGIESPKIAVCGINPHAGENGLFGYGEEEEKVIPGVEKAQAEGINAVGPLPADTLFFRAVRGDFDIVVAMYHDQGHGPVKVLGLDAGVNITVGLPIIRTSVDHGTAFDIAGKGIADEKSLMEAMRQAVELAPKKK
>NZ_CP015506.1|WP_019381335.1|2798910_2800218_-|four-carbon-acid-sugar-kinase-family-protein
MFEKFGIIADDLTGANDSGVQLAKKGLTATVMMDYTGKNIQSDPDVLIVDTDSRAKTQEEAYEAVEKAASLLFEKGYAHVYKKVDSTLRGNIAAELAALEGVYRPEIIVIAPAFPKMNRTTVSGHHYVNGKLITETEFGRDPKTPVTESFLPRLLNKNAGKDIALLDLELIRGEKADILEFIERAVAAGKTWIVCDSEREEDLQVIAEIFTSVQKKTIWTGSGALVEYLPDALKLRSHHENDHEENNIRKTLTVSGSLSQVTKKQLTRIRELDQSYFAEINPVQLVNQTVDLEEVIEEIGQNQDNSHFVVYVDSSDQNRDAARIAGEAIGLSGKQIGERIAMGLGQIANRLVNKFPELDGLILTGGDIAKAACSELGIQEMELHTEIEPGLPFGRLRSKERSYWAVTKAGGFGNEQSLANAIHYMTRKVECNESN

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Crispr_ID: NZ_CP015506_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015506_3

5335150-5335536

Orphan

Consensus_repeat	Method
CNACTTCGGACTCANNNNCTCC	CRT

7 spacers

The CRISPR arrays of NZ_CP015506_3

>merge|NZ_CP015506|3|5335150-5335536|CRT
CTACTTCGGACTCAACCTCTCCGATTCCTACCCCCACTGTCCGAATAAGTGCCAACTTCGGACTCGCTTCCTCCAATTTCCTCTCTTTCTGTCTGAAGCTGCATAAACTTCGGACTCAACCTCTCTGATTTCTACTCCAACTGTCCGAATAAGTGCCAACTTCGGACTCACTTCCTTCAATTTCCTCTCTTTCGGTCTGAAGGTGCACCTACTTCGGACTCAACCTCTCCGATTCCTGCTTCTACTGTCCGAATAACCGTCAACTTCGGACTCAACCTCTCCTATTTCTACTCCTACTGTCCGAATAACCGCCTACTTCGGACTCTCTTCCTCCAATTTCCTCTCTTTCTGTCTGAAGATGCATCTACTTCCGGACTCAACCTCTCC

>NZ_CP015506|3|3|5335150-5335536|CRT
CTACTTCGGACTCAACCTCTCC	GATTCCTACCCCCACTGTCCGAATAAGTGC
CAACTTCGGACTCGCTTCCTCC	AATTTCCTCTCTTTCTGTCTGAAGCTGCAT
AAACTTCGGACTCAACCTCTCT	GATTTCTACTCCAACTGTCCGAATAAGTGC
CAACTTCGGACTCACTTCCTTC	AATTTCCTCTCTTTCGGTCTGAAGGTGCAC
CTACTTCGGACTCAACCTCTCC	GATTCCTGCTTCTACTGTCCGAATAACCGT
CAACTTCGGACTCAACCTCTCC	TATTTCTACTCCTACTGTCCGAATAACCGC
CTACTTCGGACTCTCTTCCTCC	AATTTCCTCTCTTTCTGTCTGAAGATGCATC
TACTTCCGGACTCAACCTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015506.1\|WP_019380509.1\|5339433_5340840_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NZ_CP015506.1\|WP_019380515.1\|5330246_5331656_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|131051
NZ_CP015506.1\|WP_019380511.1\|5336454_5337996_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP015506.1\|WP_019380516.1\|5328776_5330216_-\|sucrose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|273554
NZ_CP015506.1\|WP_019380505.1\|5344100_5345135_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP015506.1\|WP_019380518.1\|5326027_5327539_-\|malate:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|377591
NZ_CP015506.1\|WP_019380503.1\|5346116_5347631_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP015506.1\|WP_019380508.1\|5340923_5342354_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
NZ_CP015506.1\|WP_026041607.1\|5327813_5328755_-\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|215183
NZ_CP015506.1\|WP_019380514.1\|5331812_5332802_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP015506.1\|WP_019380521.1\|5324142_5324280_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP015506.1\|WP_019380506.1\|5342881_5344051_+\|DUF418-domain-containing-protein	unknown	unknown	gnl\|CDD\|225193
NZ_CP015506.1\|WP_157888618.1\|5334150_5335023_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP015506.1\|WP_009332401.1\|5335730_5336462_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP015506.1\|WP_019380519.1\|5325394_5325844_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP015506.1\|WP_019380507.1\|5342480_5342669_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015506.1\|WP_019380520.1\|5324438_5325311_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP015506.1\|WP_019380510.1\|5338011_5339358_+\|GntP-family-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP015506.1\|WP_009332391.1\|5323854_5324073_+\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP015506.1\|WP_051005541.1\|5345146_5346106_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093

Protein	Function_ID	Function_description	E-value
NZ_CP015506.1\|WP_019380509.1\|5339433_5340840_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP015506.1\|WP_019380515.1\|5330246_5331656_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP015506.1\|WP_019380511.1\|5336454_5337996_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP015506.1\|WP_019380516.1\|5328776_5330216_-\|sucrose-6-phosphate-hydrolase	gnl\|CDD\|273554	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP015506.1\|WP_019380505.1\|5344100_5345135_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.03109e-75
NZ_CP015506.1\|WP_019380518.1\|5326027_5327539_-\|malate:quinone-oxidoreductase	gnl\|CDD\|377591	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.	0
NZ_CP015506.1\|WP_019380503.1\|5346116_5347631_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP015506.1\|WP_019380508.1\|5340923_5342354_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
NZ_CP015506.1\|WP_026041607.1\|5327813_5328755_-\|aminoimidazole-riboside-kinase	gnl\|CDD\|215183	PLN02323, PLN02323, probable fructokinase.	1.14036e-117
NZ_CP015506.1\|WP_019380514.1\|5331812_5332802_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.00455e-114
NZ_CP015506.1\|WP_019380521.1\|5324142_5324280_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	5.28775e-09
NZ_CP015506.1\|WP_019380506.1\|5342881_5344051_+\|DUF418-domain-containing-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	2.50582e-31
NZ_CP015506.1\|WP_157888618.1\|5334150_5335023_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	1.83989e-20
NZ_CP015506.1\|WP_009332401.1\|5335730_5336462_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.08821e-42
NZ_CP015506.1\|WP_019380519.1\|5325394_5325844_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.93932e-20
NZ_CP015506.1\|WP_019380520.1\|5324438_5325311_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	7.95489e-43
NZ_CP015506.1\|WP_019380510.1\|5338011_5339358_+\|GntP-family-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP015506.1\|WP_009332391.1\|5323854_5324073_+\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.59065e-22
NZ_CP015506.1\|WP_051005541.1\|5345146_5346106_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.29228e-83

>NZ_CP015506.1|WP_157888618.1|5334150_5335023_+|NERD-domain-containing-protein
MSIRYLNTRMELTEKEKLQYSNLEKGYEGEVKFDHLAEILQEERLIINDLLLEVNNSYFQIDTLIISESMIHLLEIKNYQGDWYLESDKLYTVTAGREYKNPVYQLKRSAALLRQLLQTLKQNYPVKASVVFINPEFTLYQAPMDQPIVLPTQVNRFIKDLNKTPSNLNDGHTKLAQHLMSLHQPKNPFTVWPKYHFEQLKKGIHCKTCKSLPLTIKSKDLVCKKCGGNEKIEQAILRNIKEFQLLFPERKLTTQNIYEWCNLDLSKRTICRVLKKNYTALGSTSNTYYV
>NZ_CP015506.1|WP_019380514.1|5331812_5332802_-|LacI-family-DNA-binding-transcriptional-regulator
MITIKEIAERANVSRTTVSRVLNDSGYVSEDARKRVLHVIEETGYVPSAHAKSLRTKKTKVIGVILPKISTETSSRLVNGIDDVLAREGYQILLANTNLHAEKEIEYIRLLKSRNVDGMILSATNVQPELIQEIRQLKIPFIMVGQHAEELTNVIFDEYQAARDMVGLLIKKGYKKIAFIGVDEADRAVGYLRKKGYLDAMKEHEVPVEESWLQKGIFDIDSGAECMKSIMESAENKPQAVLAVTDRLAIGALQYLRQNGFSVPGDVAIAGMGGSELSKYITPGLTTIDFSFEDAGREAALLILQKVKGEYGQEITRKIRYRLVERESI
>NZ_CP015506.1|WP_019380515.1|5330246_5331656_-|PTS-transporter-subunit-EIIC
MSEYRKISEELIDAVGGSENVHSVAHCATRLRIIVNDKEKIDQEKVESINKVKGAFFNSGQYQIIFGTGTVNKVYEEVSGLDIESMSASEQKKEAVKSGSAFQRAIRKFGDVFVPIIPVLVATGLFMGLRGLVMQEEILALFGMTASNVSENFILFTQVLTDTAFIFLPALVAWSTFRVFGGTPIIGLILGLMLVSPSLPNAWDVAGGNVEPIYFFGFIPVVGYQASVLPAFIAGIIGAKLERLIRKRVPDALDLIITPFLTLLIMIGLSLLVIGPLFHMVEQGILDVTTTVLSWPFGISGILIGGLNQLIVITGVHHIFNMLEIQLLAQYKSNPYNAIVTCAVAAQGGATLAVALKTQSAKLKALAFPSALSAFLGITEPALFGVNLRYGKPFVMGLIGGAAGGFAASLLQLKATGMAVTVIPGTLLYLNGQVLQYILVNVIAIAVAFALTWMFGYSDKARKEVEQGQ
>NZ_CP015506.1|WP_019380516.1|5328776_5330216_-|sucrose-6-phosphate-hydrolase
MTEIDFFKKASEEAERNRHLVQQDPYRLKYHLMPPVGLLNDPNGLIQFNGVYHVFYQWNPFDTAHGAKYWGHYTSRDLVHWKEEPVALAPDQWYDRNGCYSGSAIEYEGKLYLFYTGNVKTEDGRRETYQCLAVSEDGIHFAKKGPVLELPERYTAHFRDPKVWEKDGHFYMVVGAQTSNQEGAAVLFASKDLYHWEEQGKIAGASMNGLEDFGYMWECPDLFELDGQEILLVSPQGLEPSGFEYHNLFQSGYFAGKLDYEKAIFKHGSFVELDRGFDFYAPQTFKDDSGRRILYGWMGMTDEDESSQPTVPYRWIHALTMPRVLEMINGRLFQKPVKELKKLRKDKMELQNIEINGESLQLDGLSGKTAELMLESLKNVRGMFKIDFRNEASLTYNPDQKEIQLQRRNVKTGMQESRTCKISSLSELHVFMDQSSLEIFINGGEEVFTARYFPDPEDETIFFSGDAGFSVSMWNLENK
>NZ_CP015506.1|WP_026041607.1|5327813_5328755_-|aminoimidazole-riboside-kinase
MKGVLCLGEALIDFIPLDSDNSTYQKAPGGAPANVSVGVSKLGGKAAFIGKVGDDVLGRFLKDTLKGYGVHTQYMKLTDEARTGITFVTLEPSGERDFSFYINPSADSFLNKDEIDWSIFEKYKIFHFGSISLIHEPSRTAALQAVKRAREKNMLISYDPNLRLGLWGSEERAKAEIMATLPYADILKISEEELTFLTGCNDMEEGISRLPENQLTIVTLGSDGCIFRYKDEIGKVPALPYKVVDTTGAGDAFVSGLLYCINESPKALEEHSHDEMAFMIRFANVSGGLAVTRKGAMTGLPCLDEVQDILKKT
>NZ_CP015506.1|WP_019380518.1|5326027_5327539_-|malate:quinone-oxidoreductase
MSSVQNKTDVILIGAGIMSATLGSLLKELAPEWEIKVFEKLASAGEESSNEWNNAGTGHAALCELNYTSEKSDGSIDITKAINVNEQFQLSRQFWAYLVENNLIRNPQDFIMPIPHMSFVQGEKNVSFLKKRLEALSANPLFQGMEFSDDPEKLKEWIPVMMDGRTSDEPIAATKIDSGTDVNFGALTRMLFDHLKSKNVNVHYQHSVEDLKRADDGSWNVKVRNMESGTTENHQAKFVFIGGGGGSLHLLQKTGIPESKHIGGFPVSGLFLVCNKPEIVEKHHAKVYGKAKVGAPPMSVPHLDTRFIDNKKSLLFGPFAGFSPKFLKTGSNMDLIKSVKPNNVITMLAAGAKEMGLTKYLIQQVMLSHEQRVEELREFIPNAQSEDWSVVVAGQRVQVIKDTPAGKGTLQFGTEVVSASDGSVAALLGASPGASTAVNVMLEVLQKCFPQYMEEWHFKIKKMIPSYGMSLSENPELFREIHESTAQVLGLSEAENQKELAYN
>NZ_CP015506.1|WP_019380519.1|5325394_5325844_-|helix-turn-helix-transcriptional-regulator
MIFAEKLKKERKEKGWSQEELAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTIDELLRSDEDLTEKVIKDSRQLAYPRLKVFFDCLFLIGSAMLIIKLSILGLNHFTELEIPIRGSFFWNFGPLFLMLGGAIFSDTLKKKYKNE
>NZ_CP015506.1|WP_019380520.1|5324438_5325311_-|AraC-family-transcriptional-regulator
MDLLQNMNRAMRYIEEHLTDEIDFKELAKIAFCSEYHFKRMFSFLAGVTLSEYIRRRRLTLAAFDLKDKNARVIDVAFKYGYSSPDSFTRAFQQLHGITPSEARSNGHALKAYPPMTFHLSIKGGNEMNYRIEEKDAFRIVGLKKRVPIIFNGVNPEIAAMWESLDEKMILRLKSVSDTEPFGLISASANFSEGRMEEKGELDHYIGAATAKECPEGMASLEVPACSWAVFEAVGPFPETLQNVWGRIYSEWFPSSSYQQIDGPEILWNESKDTASPTFRSEIWIPVMKK
>NZ_CP015506.1|WP_019380521.1|5324142_5324280_+|YvrJ-family-protein
MEQMVTLISELGFPIVVTLFLLNRIEAKLDVVVSSIQGLPDRLKE
>NZ_CP015506.1|WP_009332391.1|5323854_5324073_+|DUF2922-domain-containing-protein
MAKTLEMTFETELGKETKLSVDSPKEPIDPAAVKAVMEQIIAVNAFDGNGGDLVSAKGARLIERNVTDYELV
>NZ_CP015506.1|WP_009332401.1|5335730_5336462_+|GntR-family-transcriptional-regulator
MNDSNEFLYPQKWLSKASAGDRVAYELRMRIIAGLFESGTTLSENKLAGDFAVSRSPVREALRTLASENIIRLERTGAVVAGLTEKEIEEIYDVRLMIETFVFERLISMDTNELAMELSKVLEMMKVAVKYQDADEFSYQDILFHEIIIRSIGHSYVSLIWNNLKPVMESFILLSMRVRFKENYEDLTRILKNHELYIDAIKTKDRDLMIKSLHENFDDVQGKVDDLWRSQQMLSKGVKQQDD
>NZ_CP015506.1|WP_019380511.1|5336454_5337996_+|gluconokinase
MTSYMLGIDIGTTSTKAVLFSEQGKVIQHENIGYPLYTPDISTAEQNPEEIFSAVLQSIANIMENHSDKNLSFISFSSAMHSVIAMDEDHLPLTPVITWADNRSEAWARKIKDELNGHEVYKRTGTPIHPMSPLSKIAWIVNERPEIASKTKKYIGIKEYIFKKLFDEYVVDYSLASCMGMMNLKTLDWDEEALAIAGVTPAQLSKLVPTTKMFKNCNPKLAKQMGIDPQTPFVIGASDGVLSNLGVNAIRKGEIAITIGTSGAIRTIIDKPQTDEKGRIFCYALTENHWVIGGPVNNGGMVLRWIRDEFASSEIETAKRLGIDPYEVLTKIAERVRPGADGLLFHPYLAGERAPLWNPDVRGSFFGLTMSHKKEHMIRAALEGVIYNLYTVYLALVECMDGPVTRIQATGGFARSEIWRQMMSDIFESEVVIPESYESSCLGACILGLYATGKIDSFEAVSEMVGDTYKHTPQETAVKEYRQLLPIFIHLSRTLEDDYSAIANYQRRLVQHN
>NZ_CP015506.1|WP_019380510.1|5338011_5339358_+|GntP-family-permease
MPLVIVGIGIIALLILIMGLKLNTFISLIIVSFGVALALGMPLDQIVKTIEAGLGGTLGHLALIFGLGAMLGKLIADSGGAQRIAMTLVNKFGEKNIQWAVVAASFIIGVALFFEVGLVLLIPIVFAISRELKISILYLGIPMTAALSVTHGFLPPHPGPTVIAGEFGANIGEVLLYGFIIALPTVILAGPVFTKIAKRLVPESFTKSGSIASLGEQKTFKLEDTPGFGISVFTALLPVILMSIATIITLLQKTLGFEDNSILAAIRFIGDAGTSMLISLLVAIYTMGLARKIPIKNVMESCTTAITHIGMMLLIIGGGGAFKQVLIDGGVGDYVAELFKGTNLSPILLAWIIAAILRISLGSATVAALTTAGLVIPMLGQSDVNLALVVLATGAGSLVASHVNDAGFWMFKEYFGLSMKETFATWTLLETIISVAGLGFILLLSLFV
>NZ_CP015506.1|WP_019380509.1|5339433_5340840_+|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase
MLNTIGVIGLGVMGSNIALNMANNGEQVAVYNYTRDLTDKLVQKLDGQTINPYYEIGDFVNSLETPRKIFLMVTAGKAIDSVISSLIPFLEEGDVIMDGGNSHYEDTGRRYDELKSKGIGYLGIGISGGEVGALTGPSIMPGGDKEVYDKAAPILTKIAAQVDGVPCCVYIGPKGAGHFVKMVHNGIEYADMQLIAEAYTFLRDKLGLSVEEIADIFETWNQGELKSYLIEITADILRKKDERTGLPQIDVILDKAGQKGTGKWTSLQAIDNGIPTSIITESLFARYISALKEERMTAETLLTGPEKNQTALEKEEWIEYIRQALYMGKVCAYAQGFTQYKMSSELYGWNLPLKDIALIFRDGCIIRAEFLNVISEAYQEQPSLANLLVSPYFAERIRDYQNGLRKIVCEGIQSGIALPCLSSSLSYYDSYRTGNSNASMLQAQRDYFGAHTYERTDLEGTFHTNWNE
>NZ_CP015506.1|WP_019380508.1|5340923_5342354_-|aspartate-ammonia-lyase
MLAATNSFRIEKDFLGSKEVPVDAYYGVQTLRAVENFPITGYRIHPELIKAMAMVKKAAALANMEVKRLYSGIGDPIVQAADEMIEGLWHDQVIVDPIQGGAGTSINMNINEILANRAIEIMGYEKGDYSHCSPNTHVNMSQSTNDAFPTAMHISVLNLLDQLIPTMEHMHSVFLEKSKEFNHVIKMGRTHLQDAVPIRLGQEFEAYSRVIARDIKRIQQSKQHLYELNMGATAVGTGLNAIPKYIDLVVKHIADISGLPFTGADHLVDATQNTDSYTEVSGALKICMINMSKIANDLRLMASGPRAGLGEISLPARQPGSSIMPGKVNPVLPELINQVAFQVIGNDHTISLASEAGQLELNVMEPVLIFNLLQSISIMNNAFSTFTEHCVKGIEANEERLREYVEKSVGIITAVNPHLGYEVVSRIAREAILTGSPIRELCLKYDVLTEEELDLILDPYEMTDPGIAGAALLERD
>NZ_CP015506.1|WP_019380507.1|5342480_5342669_+|hypothetical-protein
MECQLLPYYLTALCQLSYAIDINLNTTYYLIALIEIAFNARNEQVPYYRMADKGTEEALIMD
>NZ_CP015506.1|WP_019380506.1|5342881_5344051_+|DUF418-domain-containing-protein
MSNQSSMRTAGPKKRAVSLDLARGTMLLLIALAHAPLYLYTSEPGIMQRVEAVTFLDQIVNFLGQFFIDNRARAMFAVLFGYGLVLAFDSRISKGIREKEAIKTIRRRSWYLILFGIVLAVIIGGQDILMAYGTAGLLVSWLLAREIKTLIRTFIFITLFYIIFGPIMWGFNMLEIGGYGFPPEVSAADTYLGTALIGLYTFPSIPILIHLMFPVLPSVLLGMWIARYQLLIKPEQHLKIIYLITVLGLTVSLLGALPLSLLGTLWHPSPFTAGLMNGLHILTGIAGGLAYAAIFGIIGTKVKKPGSLTLSLMALGKRSLTFYVWNETMLVLFLSSVALDLGGRVSNGTAAVIAAGIWCLSLLLAWGLEKKDLNGPLEVLLRRLAYRNK
>NZ_CP015506.1|WP_019380505.1|5344100_5345135_-|Gfo/Idh/MocA-family-oxidoreductase
MGIKVGIIGCGSITKLRHAPEYRDNPYVDEIVFFDRNLQRATELANQFGGSVAQTAEELLADPAVEAISDCSSNEFHHIFSANALLSGKHVLCEKPISLSVEQANKIIEAQKESGKKLMVDHNQRFTRAHQKAKEIIKNEELGKVLTFRTTFGHSGPEQWGVNKSNSTWFFKKERSGLGVAGDLGIHKIDLIHYLLDDEIEQVSAFQGALDKVNEKGEPIEVCDNIVCSLKTKKGRLGTAAFSWTYYGEEDNSTVIYCEQGILKIYHSDKYQIEIMNKNGENIFFELEKIQTNENQTNSGVIDAFIDCIRLDQDPLVTGSDALSSLKVILGIMEAAEKGCVTTI
>NZ_CP015506.1|WP_051005541.1|5345146_5346106_-|ABC-transporter-permease
MKQPNQQTSTAKSRLSWLWSEYSVIIAFLIIFLAASIMSPRFLDINNQLNILMQVSIIGIVALGMTIVMLSGGIDLSVGSVLVLVGVITVLALNATGSILIAVLTAFIAGTFAGFLNGLMVAKGRIASFIATLGMMAAARSIALYIAEGGSISGEVPSFTAISNSDLWIFDYPVIIFFVMTAIVYILMHKTRFGRYVYALGSNEKAALLSAIRVDRVKIGVYSLVGLLVSVAAIIETSRLNSISSSSSGVQYELDAIAAVIIGGTRMTGGRGKIMGTFFGVLILGILNNMMNLMNVSPHLQGFVKGLIIIIAVVFQKRE
>NZ_CP015506.1|WP_019380503.1|5346116_5347631_-|sugar-ABC-transporter-ATP-binding-protein
MTTSPFLKMSSIEKSFNRVPVLKDVTLNVQKGEIHALLGENGAGKSTLMNILGGVHQPDSGTIHINGQDVKMSNPRVSQEQGVSFIHQELNVVSDLRVYENMFLGSELRNKFGFLKVQEMCRFTNEILAKLGVDIDPREYVRNLETSYKQLIEISKALLHKSKLIIMDEPTTSLAEHEVSRLFDLMRNLKNSGVSIIYISHKLKEIKEVCDRYTVLRDGELVGTGSIENENLDTITKLMVGKSISQDRLVQKHSYGPVILEVTDLTSPGLYKDISFTLRKGEILGFTGLAGDGRTELFESLFGYRKKYTGEIKINKQPVKIDNPRKAVEAGLGLVPKDRKENAIIKDLSVIHNMSLTSIGHFEKSGFIQERQEKEKFQYYKDKLNIKVHNPRITIDKLSGGNQQKVIIAKWLEVDTDIIIFDNPTQGIDVGAKQEIYQQIVSLAEQGKAVIILSSEAPEVQKICHHIYVMYQGEITARFKGEEASEDDIMSYATGSKREAEKIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015506_2	2.3\|2787916\|28\|NZ_CP015506\|CRT	2787916-2787943	28	NZ_AP014817	Geminocystis sp. NIES-3708 plasmid pGM02, complete sequence	55088-55115	4	0.857
NZ_CP015506_1	1.6\|900411\|29\|NZ_CP015506\|CRT	900411-900439	29	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	35806-35834	6	0.793
NZ_CP015506_2	2.9\|2788224\|28\|NZ_CP015506\|CRT	2788224-2788251	28	NZ_CP014000	Synechococcus sp. PCC 73109 plasmid unnamed2, complete sequence	13692-13719	6	0.786
NZ_CP015506_1	1.1\|900151\|29\|NZ_CP015506\|CRT	900151-900179	29	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	326689-326717	7	0.759
NZ_CP015506_2	2.10\|2788276\|27\|NZ_CP015506\|CRT	2788276-2788302	27	MN694062	Marine virus AFVG_250M191, complete genome	29466-29492	7	0.741
NZ_CP015506_2	2.10\|2788276\|27\|NZ_CP015506\|CRT	2788276-2788302	27	MN694649	Marine virus AFVG_250M190, complete genome	3737-3763	7	0.741
NZ_CP015506_2	2.10\|2788276\|27\|NZ_CP015506\|CRT	2788276-2788302	27	MN694572	Marine virus AFVG_250M22, complete genome	3162-3188	7	0.741
NZ_CP015506_3	3.5\|5335380\|30\|NZ_CP015506\|CRT	5335380-5335409	30	MN694152	Marine virus AFVG_250M376, complete genome	34770-34799	7	0.767
NZ_CP015506_3	3.7\|5335484\|31\|NZ_CP015506\|CRT	5335484-5335514	31	MH576968	Streptomyces phage Wofford, complete genome	12777-12807	7	0.774
NZ_CP015506_3	3.2\|5335224\|30\|NZ_CP015506\|CRT	5335224-5335253	30	MG945709	UNVERIFIED: Microviridae sp. isolate 1866-1801, complete genome	5597-5626	8	0.733
NZ_CP015506_3	3.7\|5335484\|31\|NZ_CP015506\|CRT	5335484-5335514	31	MH487649	Bacillus phage BC01, complete genome	75943-75973	8	0.742
NZ_CP015506_3	3.7\|5335484\|31\|NZ_CP015506\|CRT	5335484-5335514	31	KT224359	Bacillus phage TsarBomba, complete genome	111494-111524	8	0.742
NZ_CP015506_3	3.2\|5335224\|30\|NZ_CP015506\|CRT	5335224-5335253	30	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	56749-56778	9	0.7
NZ_CP015506_3	3.7\|5335484\|31\|NZ_CP015506\|CRT	5335484-5335514	31	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	608591-608621	9	0.71

1. spacer 2.3|2787916|28|NZ_CP015506|CRT matches to NZ_AP014817 (Geminocystis sp. NIES-3708 plasmid pGM02, complete sequence) position: , mismatch: 4, identity: 0.857

cagctctcttttcggcttcattcattag	CRISPR spacer
cggctctggtttcggcttcattcattgg	Protospacer
*.*****  *****************.*

2. spacer 1.6|900411|29|NZ_CP015506|CRT matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 6, identity: 0.793

ggcatctgagccagaaaaatggtcgccat	CRISPR spacer
tgcttctgcgccagaaaaatggtcgtgtt	Protospacer
 ** **** ****************.  *

3. spacer 2.9|2788224|28|NZ_CP015506|CRT matches to NZ_CP014000 (Synechococcus sp. PCC 73109 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

gcctctcttttttggtcgttattcatct	CRISPR spacer
gcctgtcttttttggtcgtttttggtag	Protospacer
**** *************** ** .*

4. spacer 1.1|900151|29|NZ_CP015506|CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 7, identity: 0.759

ggcacgagaggcagaaaaatggtcgctat	CRISPR spacer
aactaaagtggcagaaaaatgatcgctat	Protospacer
..*  .** ************.*******

5. spacer 2.10|2788276|27|NZ_CP015506|CRT matches to MN694062 (Marine virus AFVG_250M191, complete genome) position: , mismatch: 7, identity: 0.741

gcctctctttttggtcgttattcatct	CRISPR spacer
cgtacaatttttggtcgttattcatcg	Protospacer
  . *  *******************

6. spacer 2.10|2788276|27|NZ_CP015506|CRT matches to MN694649 (Marine virus AFVG_250M190, complete genome) position: , mismatch: 7, identity: 0.741

gcctctctttttggtcgttattcatct	CRISPR spacer
cgtacaatttttggtcgttattcatcg	Protospacer
  . *  *******************

7. spacer 2.10|2788276|27|NZ_CP015506|CRT matches to MN694572 (Marine virus AFVG_250M22, complete genome) position: , mismatch: 7, identity: 0.741

gcctctctttttggtcgttattcatct	CRISPR spacer
cgtacaatttttggtcgttattcatcg	Protospacer
  . *  *******************

8. spacer 3.5|5335380|30|NZ_CP015506|CRT matches to MN694152 (Marine virus AFVG_250M376, complete genome) position: , mismatch: 7, identity: 0.767

gattcctgcttctactgtccgaataaccgt	CRISPR spacer
ttctcctgcttctactgtactaataactgg	Protospacer
  .*************** * ******.*

9. spacer 3.7|5335484|31|NZ_CP015506|CRT matches to MH576968 (Streptomyces phage Wofford, complete genome) position: , mismatch: 7, identity: 0.774

aatttcc---tctctttctgtctgaagatgcatc	CRISPR spacer
---ttctgagtctctttctgtttgaagatgtatg	Protospacer
   ***.   ***********.********.**

10. spacer 3.2|5335224|30|NZ_CP015506|CRT matches to MG945709 (UNVERIFIED: Microviridae sp. isolate 1866-1801, complete genome) position: , mismatch: 8, identity: 0.733

aatttcctctctttctgtctgaagctgcat	CRISPR spacer
ttgttcctctgtttctgtctgatgctgagc	Protospacer
   ******* *********** **** ..

11. spacer 3.7|5335484|31|NZ_CP015506|CRT matches to MH487649 (Bacillus phage BC01, complete genome) position: , mismatch: 8, identity: 0.742

aatttcctctctttctgtctgaagatgcatc	CRISPR spacer
tctttcctctctttctgtcttatgataactt	Protospacer
  ****************** * ***.  *.

12. spacer 3.7|5335484|31|NZ_CP015506|CRT matches to KT224359 (Bacillus phage TsarBomba, complete genome) position: , mismatch: 8, identity: 0.742

aatttcctctctttctgtctgaagatgcatc	CRISPR spacer
tctttcctctctttctgtcttatgataactt	Protospacer
  ****************** * ***.  *.

13. spacer 3.2|5335224|30|NZ_CP015506|CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 9, identity: 0.7

aatttcctctctttctgtctgaagctgcat	CRISPR spacer
ctcattctccctttctgtctgaagctgttg	Protospacer
  . *.***.*****************.

14. spacer 3.7|5335484|31|NZ_CP015506|CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.71

aatttcctctctttctgtctgaagatgcatc	CRISPR spacer
gtatagctctctttctgcctgaggatgcaga	Protospacer
.  *  ***********.****.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

348240 : 356651

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009336739.1\|348240_349533_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.3e-18	25.5
WP_019382939.1\|349648_350374_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	5.2e-49	47.2
WP_019382938.1\|350361_350616_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_019382937.1\|350612_351299_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_019382936.1\|351282_353499_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.9e-164	41.6
WP_009336744.1\|353483_354881_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.4e-50	31.1
WP_019382935.1\|355030_356056_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	2.9e-61	41.2
WP_019382934.1\|356069_356651_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-26	35.3

DBSCAN-SWA_2

1518433 : 1555695

Bacillus_phage(42.31%)

tail,integrase,terminase,head,portal,protease,holin,capsid

attL 1518294:1518336|attR 1561505:1561547

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1518294:1518336	attL	NA	NA	NA	NA
WP_019381509.1\|1518433_1519633_-\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	2.6e-109	52.7
WP_019381510.1\|1519737_1520019_-	hypothetical protein	NA	NA	NA	NA
WP_019381511.1\|1520023_1522024_-	DEAD/DEAH box helicase family protein	U6E9C9	Streptococcus_phage	1.0e-17	27.2
WP_019381512.1\|1522272_1522713_-	ImmA/IrrE family metallo-endopeptidase	Q9T201	Bacillus_phage	8.4e-34	49.6
WP_019381513.1\|1522718_1523147_-	helix-turn-helix transcriptional regulator	Q786F1	Bacillus_phage	1.8e-25	45.0
WP_019381514.1\|1523340_1523568_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_026041684.1\|1523621_1523810_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019381516.1\|1523810_1524512_+	ORF6N domain-containing protein	A0A0S2SXM6	Bacillus_phage	1.9e-43	38.8
WP_009330644.1\|1524655_1524919_+	helix-turn-helix transcriptional regulator	S5MNZ7	Brevibacillus_phage	6.5e-18	59.0
WP_019381519.1\|1525310_1525514_+	hypothetical protein	NA	NA	NA	NA
WP_180321097.1\|1525654_1526566_+	YqaJ viral recombinase family protein	Q9T173	Listeria_phage	6.5e-105	63.1
WP_019381521.1\|1526565_1527495_+	recombinase RecT	A0A0B5CTU3	Listeria_phage	1.1e-88	68.4
WP_019381522.1\|1527654_1528680_+	HTH domain-containing protein	NA	NA	NA	NA
WP_019381525.1\|1529602_1529854_+	hypothetical protein	NA	NA	NA	NA
WP_019381527.1\|1530251_1531739_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA
WP_019381528.1\|1531944_1532523_+	hypothetical protein	NA	NA	NA	NA
WP_019381529.1\|1532546_1533230_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_019381530.1\|1533353_1533512_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_019381531.1\|1533684_1533867_+	DUF3954 domain-containing protein	A0A2P1JTX5	Anoxybacillus_phage	3.3e-13	59.3
WP_019381532.1\|1533874_1534048_-	hypothetical protein	NA	NA	NA	NA
WP_019381533.1\|1534211_1534679_+	hypothetical protein	A0A290FZR5	Caldibacillus_phage	6.4e-32	49.7
WP_019381534.1\|1534810_1535002_+	hypothetical protein	NA	NA	NA	NA
WP_019381535.1\|1535075_1535306_+	hypothetical protein	NA	NA	NA	NA
WP_019381536.1\|1535355_1536168_+\|terminase	terminase small subunit	Q5YA77	Bacillus_phage	5.2e-82	67.2
WP_019381537.1\|1536167_1537370_+\|terminase	PBSX family phage terminase large subunit	A0A2H4J8B0	uncultured_Caudovirales_phage	3.2e-184	75.0
WP_019381538.1\|1537379_1538756_+\|portal	phage portal protein	A0A2H4J4Q7	uncultured_Caudovirales_phage	5.1e-146	57.4
WP_019381539.1\|1538752_1539766_+	hypothetical protein	A0A1Q1PVS0	Bacillus_phage	1.2e-59	42.9
WP_157888575.1\|1539816_1539960_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_157888576.1\|1540066_1540717_+	DUF4355 domain-containing protein	A0A2H4J4P4	uncultured_Caudovirales_phage	4.1e-45	50.3
WP_051005557.1\|1540748_1541708_+\|capsid	phage major capsid protein	M9NTC2	Staphylococcus_phage	5.2e-89	55.0
WP_019381543.1\|1541725_1542031_+	hypothetical protein	NA	NA	NA	NA
WP_019381544.1\|1542041_1542383_+\|head,tail	phage head-tail connector protein	Q4ZC67	Staphylococcus_virus	9.7e-14	38.6
WP_019381545.1\|1542369_1542696_+\|head	phage head closure protein	NA	NA	NA	NA
WP_019381546.1\|1542688_1543108_+	HK97 gp10 family phage protein	O48447	Bacillus_phage	1.0e-36	56.6
WP_019381547.1\|1543109_1543514_+	DUF3168 domain-containing protein	W8EK61	Geobacillus_phage	2.4e-19	38.8
WP_099049169.1\|1543526_1543784_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_099049170.1\|1543794_1544052_+	hypothetical protein	NA	NA	NA	NA
WP_019381548.1\|1544114_1544567_+	hypothetical protein	O48453	Bacillus_phage	5.6e-09	29.8
WP_019381549.1\|1544677_1544908_+	hypothetical protein	NA	NA	NA	NA
WP_019381550.1\|1544911_1547617_+	hypothetical protein	W8EBC4	Geobacillus_phage	9.9e-77	46.8
WP_019381551.1\|1547618_1549043_+\|tail	phage tail family protein	A0A142F1N1	Bacillus_phage	4.4e-68	34.8
WP_019381552.1\|1549039_1552885_+\|tail	phage tail protein	A0A142F1N2	Bacillus_phage	3.8e-106	52.0
WP_019381553.1\|1552905_1553298_+	hypothetical protein	NA	NA	NA	NA
WP_019381554.1\|1553399_1553546_+	hypothetical protein	NA	NA	NA	NA
WP_051005558.1\|1553629_1553866_+	hemolysin XhlA family protein	A0A2H4JD40	uncultured_Caudovirales_phage	1.6e-20	64.0
WP_019381556.1\|1553867_1554134_+\|holin	phage holin	A0A142F1N6	Bacillus_phage	8.3e-21	55.2
WP_019381559.1\|1555005_1555695_+	N-acetylmuramoyl-L-alanine amidase	A0A0N6W8I1	Bacillus_phage	2.5e-56	48.1
1561505:1561547	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2013665 : 2098543

100

Bacillus_phage(30.56%)

tail,integrase,terminase,portal,protease,capsid,tRNA,holin,head

attL 2015442:2015455|attR 2100150:2100163

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162272002.1\|2013665_2015972_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2015442:2015455	attL	NA	NA	NA	NA
WP_019381814.1\|2015907_2017119_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_099049171.1\|2017445_2017775_+	hypothetical protein	NA	NA	NA	NA
WP_009330654.1\|2018151_2020755_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-41	25.4
WP_009330653.1\|2020770_2022693_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.4e-69	32.5
WP_009330587.1\|2022886_2023894_-	rod shape-determining protein MreB	NA	NA	NA	NA
WP_019381817.1\|2024169_2025132_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_009330585.1\|2025159_2025393_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_009330584.1\|2025807_2026758_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	1.9e-54	42.0
WP_009330583.1\|2026836_2027070_+	glutaredoxin family protein	NA	NA	NA	NA
WP_019381819.1\|2027396_2028347_+	hydroxyacid dehydrogenase	A0A285PXZ1	Cedratvirus	4.3e-35	32.9
WP_019381820.1\|2028458_2028803_+	UxaA family hydrolase	NA	NA	NA	NA
WP_019381821.1\|2028805_2029963_+	UxaA family hydrolase	NA	NA	NA	NA
WP_019381822.1\|2030037_2031123_+	Ldh family oxidoreductase	NA	NA	NA	NA
WP_009330577.1\|2031191_2031887_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_009330576.1\|2032044_2033109_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_019381823.1\|2033513_2034509_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_019381824.1\|2034528_2035101_+	TRAP transporter small permease	NA	NA	NA	NA
WP_019381825.1\|2035120_2036401_+	TRAP transporter large permease	NA	NA	NA	NA
WP_009330572.1\|2036418_2037036_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_019381826.1\|2037274_2038531_+	GTPase HflX	NA	NA	NA	NA
WP_019381827.1\|2038544_2039816_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_175502153.1\|2040031_2040412_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_009330568.1\|2040517_2041852_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	7.4e-09	23.9
WP_019381829.1\|2042325_2042556_+	HNH endonuclease	D2XR61	Bacillus_phage	2.6e-26	70.7
WP_009330567.1\|2042672_2043164_+	LptF/LptG family permease	NA	NA	NA	NA
WP_019381830.1\|2043160_2043628_+	hypothetical protein	NA	NA	NA	NA
WP_009330566.1\|2044465_2044750_-	DUF4257 domain-containing protein	NA	NA	NA	NA
WP_009330565.1\|2045035_2045659_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.1e-15	63.8
WP_009330564.1\|2045814_2046147_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_009330563.1\|2046156_2046804_+	recombinase family protein	NA	NA	NA	NA
WP_009330562.1\|2046947_2047181_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_009330561.1\|2047411_2049418_+	transketolase	NA	NA	NA	NA
WP_009330560.1\|2049693_2050131_+	sporulation inhibitor of replication protein SirA	NA	NA	NA	NA
WP_009330559.1\|2050217_2050433_+	YneF family protein	NA	NA	NA	NA
WP_019381832.1\|2050627_2051551_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	2.6e-13	27.0
WP_157888579.1\|2051519_2051618_-	chemotaxis protein CheC	NA	NA	NA	NA
WP_019381834.1\|2052416_2052638_-	helix-turn-helix transcriptional regulator	S5MNP8	Brevibacillus_phage	4.1e-05	35.5
WP_019381835.1\|2052800_2053046_+	hypothetical protein	NA	NA	NA	NA
WP_019381836.1\|2053167_2053410_+	hypothetical protein	NA	NA	NA	NA
WP_019381837.1\|2053437_2053695_+	hypothetical protein	NA	NA	NA	NA
WP_019381838.1\|2053708_2054026_+	hypothetical protein	NA	NA	NA	NA
WP_019381839.1\|2054258_2054702_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_019381841.1\|2055369_2056452_+	hypothetical protein	A0A0H3V0V6	Geobacillus_virus	1.1e-53	37.9
WP_019381842.1\|2056760_2059502_+	hypothetical protein	O64076	Bacillus_phage	1.4e-163	40.2
WP_019381843.1\|2059877_2060573_+	hypothetical protein	A0A2I7RL47	Vibrio_phage	3.1e-06	30.5
WP_019381844.1\|2060655_2061660_+	DNA cytosine methyltransferase	D2IZY5	Enterococcus_phage	2.3e-103	59.6
WP_019381845.1\|2061721_2061946_-	hypothetical protein	NA	NA	NA	NA
WP_019381846.1\|2062073_2062460_+	hypothetical protein	NA	NA	NA	NA
WP_019381848.1\|2062795_2062999_+	hypothetical protein	NA	NA	NA	NA
WP_019381850.1\|2063266_2063578_+	hypothetical protein	NA	NA	NA	NA
WP_019381851.1\|2063561_2063960_+	hypothetical protein	NA	NA	NA	NA
WP_026041709.1\|2064092_2064581_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_019381853.1\|2064573_2066268_+	hypothetical protein	A0A075KQB9	Lactobacillus_phage	3.2e-126	43.1
WP_019381854.1\|2066283_2066847_+\|portal	phage portal protein	A0A075KK59	Lactobacillus_phage	3.8e-39	50.6
WP_019381855.1\|2066874_2067525_+\|portal	phage portal protein	A0A075KQ80	Lactobacillus_phage	1.6e-52	50.7
WP_019381856.1\|2067514_2068129_+\|head,protease	HK97 family phage prohead protease	A0A2H4J861	uncultured_Caudovirales_phage	3.7e-64	69.3
WP_026041710.1\|2068169_2069279_+\|capsid	phage major capsid protein	F7V9A6	Lactobacillus_virus	1.2e-65	39.4
WP_157888529.1\|2069327_2069483_+	hypothetical protein	U3PBG9	Lactobacillus_phage	9.8e-06	58.0
WP_019381859.1\|2069482_2069773_+\|head,tail	phage gp6-like head-tail connector protein	A0A075KKZ5	Lactobacillus_phage	2.6e-07	33.7
WP_019381860.1\|2069787_2070108_+\|head	phage head closure protein	A0A2I7SC03	Paenibacillus_phage	3.7e-31	62.5
WP_019381861.1\|2070108_2070474_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_019381862.1\|2070470_2070818_+	hypothetical protein	A0A0K2CZA4	Paenibacillus_phage	3.0e-18	44.4
WP_019381863.1\|2070819_2071377_+	hypothetical protein	A0A2I7SBZ0	Paenibacillus_phage	2.4e-30	38.5
WP_019381864.1\|2071443_2071764_+	hypothetical protein	NA	NA	NA	NA
WP_019381866.1\|2071934_2075138_+\|tail	phage tail tape measure protein	Q9ZXE7	Bacillus_phage	3.1e-101	46.6
WP_019381867.1\|2075130_2075991_+\|tail	phage tail family protein	A0A0K1YA68	Streptomyces_phage	1.4e-21	27.2
WP_019381868.1\|2075993_2077208_+	siphovirus ReqiPepy6 Gp37-like family protein	A0A0K1Y896	Streptomyces_phage	5.0e-28	31.0
WP_019381869.1\|2077212_2078142_+	hypothetical protein	A0A0K1Y8X4	Streptomyces_phage	3.5e-21	42.5
WP_019381870.1\|2078150_2078315_+	hypothetical protein	NA	NA	NA	NA
WP_019381871.1\|2078315_2078450_+	XkdX family protein	NA	NA	NA	NA
WP_019381872.1\|2078476_2078830_+	hypothetical protein	F8WQ03	Bacillus_phage	3.5e-14	40.8
WP_019381873.1\|2078829_2080326_+	hypothetical protein	NA	NA	NA	NA
WP_019381875.1\|2080741_2081101_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_019381876.1\|2081100_2081808_+	N-acetylmuramoyl-L-alanine amidase	D6QWM9	uncultured_phage	6.0e-74	61.5
WP_019381877.1\|2081865_2082054_+	hypothetical protein	NA	NA	NA	NA
WP_019381878.1\|2082087_2082366_-	hypothetical protein	NA	NA	NA	NA
WP_019381879.1\|2082465_2082726_-	hypothetical protein	NA	NA	NA	NA
WP_019381880.1\|2082751_2083003_-	lipoprotein	NA	NA	NA	NA
WP_019381881.1\|2083031_2083178_-	hypothetical protein	NA	NA	NA	NA
WP_019381882.1\|2083200_2083467_-	hypothetical protein	NA	NA	NA	NA
WP_019381883.1\|2083469_2083916_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_157888580.1\|2084006_2084198_-	helix-turn-helix domain-containing protein	A0A0U4IBA0	Bacillus_phage	4.9e-15	55.6
WP_019381886.1\|2084653_2085031_+	hypothetical protein	NA	NA	NA	NA
WP_019381887.1\|2085045_2085390_+	hypothetical protein	NA	NA	NA	NA
WP_019381888.1\|2085401_2086631_+	hypothetical protein	W8CYG2	Bacillus_phage	7.7e-61	34.4
WP_019381889.1\|2086643_2087351_+	replication-relaxation family protein	A0A1B1P7T2	Bacillus_phage	2.4e-30	39.6
WP_157888581.1\|2087480_2087657_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019381891.1\|2088019_2088541_+	hypothetical protein	NA	NA	NA	NA
WP_019381892.1\|2088647_2090396_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.3e-49	29.8
WP_019381893.1\|2090400_2092194_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.6e-51	29.3
WP_019381894.1\|2092233_2092995_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_019381895.1\|2093113_2093521_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_009330553.1\|2093581_2093752_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_009330552.1\|2094098_2094806_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_180321088.1\|2095061_2095445_+	response regulator	W8CYM9	Bacillus_phage	3.1e-08	30.0
WP_019381897.1\|2095597_2096086_+	cytochrome c biogenesis protein CcdC	NA	NA	NA	NA
WP_009330549.1\|2096136_2096631_-	DinB family protein	NA	NA	NA	NA
WP_019381898.1\|2096777_2097203_-	DUF2621 domain-containing protein	NA	NA	NA	NA
WP_019381899.1\|2097589_2098543_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	3.9e-28	32.0
2100150:2100163	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2112243 : 2134048

uncultured_Caudovirales_phage(27.78%)

tail,plate,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019381927.1\|2112243_2112957_-	recombinase family protein	Q9T193	Listeria_phage	3.6e-18	31.2
WP_019381928.1\|2113250_2113517_+	hypothetical protein	NA	NA	NA	NA
WP_099049173.1\|2113581_2115360_+	hypothetical protein	A0A0N9RZA7	Paenibacillus_phage	4.3e-206	60.4
WP_019381930.1\|2115375_2116839_+\|portal	phage portal protein	A0A0N7GFE4	Paenibacillus_phage	7.6e-148	60.7
WP_019381931.1\|2116838_2117669_+	hypothetical protein	A0A2H4IZM1	uncultured_Caudovirales_phage	2.2e-75	51.6
WP_019381932.1\|2117745_2118333_+	hypothetical protein	NA	NA	NA	NA
WP_019381933.1\|2118400_2119207_+\|capsid	N4-gp56 family major capsid protein	K4JU44	Streptococcus_phage	1.6e-54	45.5
WP_019381935.1\|2119360_2119744_+	hypothetical protein	A0A0N9SGG4	Paenibacillus_phage	3.5e-20	42.5
WP_019381936.1\|2119743_2120064_+	hypothetical protein	NA	NA	NA	NA
WP_019381937.1\|2120063_2120474_+	hypothetical protein	NA	NA	NA	NA
WP_026041714.1\|2120467_2120929_+	hypothetical protein	NA	NA	NA	NA
WP_019381939.1\|2120947_2121994_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4J187	uncultured_Caudovirales_phage	1.9e-100	55.5
WP_019381940.1\|2122013_2122451_+\|tail	phage tail tube protein	A0A0N7ACS0	Bacillus_phage	2.3e-36	51.4
WP_019381941.1\|2122513_2122918_+	hypothetical protein	A0A2H4J7P7	uncultured_Caudovirales_phage	4.8e-20	44.6
WP_019381942.1\|2123094_2124828_+	hypothetical protein	D2J070	Enterococcus_phage	1.2e-51	38.8
WP_019381943.1\|2124830_2125487_+	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	4.1e-37	40.9
WP_026041716.1\|2125507_2126485_+	hypothetical protein	A0A2H4IZP4	uncultured_Caudovirales_phage	1.1e-62	41.2
WP_019381945.1\|2126498_2126822_+	DUF2577 family protein	NA	NA	NA	NA
WP_019381946.1\|2126822_2127239_+	DUF2634 domain-containing protein	A0A2H4J6K5	uncultured_Caudovirales_phage	1.0e-17	39.6
WP_019381947.1\|2127238_2128300_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	5.6e-60	42.6
WP_019381948.1\|2128296_2128884_+	YmfQ family protein	S6BFJ0	Thermus_phage	8.3e-29	38.2
WP_019381949.1\|2128883_2129618_+	hypothetical protein	NA	NA	NA	NA
WP_019381950.1\|2129632_2129866_+	hypothetical protein	NA	NA	NA	NA
WP_019381951.1\|2129869_2130010_+	hypothetical protein	NA	NA	NA	NA
WP_019381952.1\|2130077_2130353_+	hypothetical protein	A0A142F1N5	Bacillus_phage	2.7e-06	69.0
WP_019381953.1\|2130352_2131120_+	N-acetylmuramoyl-L-alanine amidase	A0A0M4S688	Bacillus_phage	8.2e-45	55.2
WP_019381954.1\|2131139_2131319_+	hypothetical protein	NA	NA	NA	NA
WP_019381955.1\|2131441_2132068_+	hypothetical protein	NA	NA	NA	NA
WP_019381956.1\|2132105_2132522_+	hypothetical protein	NA	NA	NA	NA
WP_019381957.1\|2132565_2133111_-	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_157888583.1\|2133247_2134048_+	ATP-dependent DNA ligase	O64130	Bacillus_phage	2.9e-61	46.3

DBSCAN-SWA_5

2313870 : 2321810

Moumouvirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009334810.1\|2313870_2314962_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A2P1ELS7	Moumouvirus	2.6e-92	46.1
WP_009334809.1\|2314954_2315941_+	polysaccharide biosynthesis protein	L7RD47	Acanthamoeba_polyphaga_moumouvirus	5.9e-19	29.7
WP_009334808.1\|2315941_2316769_+	SDR family oxidoreductase	A0A2L2DJC0	Acanthamoeba_polyphaga_mimivirus	3.2e-34	33.7
WP_009334807.1\|2316765_2317668_+	NAD-dependent epimerase/dehydratase family protein	A0A222YY99	Synechococcus_phage	8.3e-20	27.6
WP_026041754.1\|2317873_2318944_-	glycosyltransferase	NA	NA	NA	NA
WP_064328213.1\|2319146_2319584_+	hypothetical protein	NA	NA	NA	NA
WP_019380289.1\|2319561_2320284_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.9e-39	37.7
WP_019380290.1\|2320301_2321810_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	9.3e-24	29.0

DBSCAN-SWA_6

3855890 : 3905921

Bacillus_phage(25.0%)

coat,protease,integrase,transposase

attL 3855834:3855847|attR 3867395:3867408

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3855834:3855847	attL	NA	NA	NA	NA
WP_167543169.1\|3855890_3856208_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0P0I4A4	Acinetobacter_phage	3.5e-10	38.5
WP_167543170.1\|3856186_3856555_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_019380396.1\|3857181_3857862_-	zinc metallopeptidase	NA	NA	NA	NA
WP_009332733.1\|3858415_3859192_-	sporulation protein YpjB	NA	NA	NA	NA
WP_009332734.1\|3859340_3859937_-	DUF1405 domain-containing protein	NA	NA	NA	NA
WP_009332735.1\|3860060_3860828_-	menaquinol-cytochrome c reductase cytochrome b/c subunit	NA	NA	NA	NA
WP_009332736.1\|3860871_3861546_-	cytochrome b6	NA	NA	NA	NA
WP_009332737.1\|3861549_3862056_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_019380393.1\|3862205_3862670_-	YpiF family protein	NA	NA	NA	NA
WP_009332739.1\|3862794_3863340_-	YpiB family protein	G3MAV7	Bacillus_virus	2.0e-45	52.7
WP_019380392.1\|3863428_3864691_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_019380391.1\|3864710_3865616_-	hypothetical protein	NA	NA	NA	NA
WP_009332742.1\|3865816_3867112_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_009332743.1\|3867155_3868262_-	prephenate dehydrogenase	NA	NA	NA	NA
3867395:3867408	attR	NA	NA	NA	NA
WP_019380390.1\|3868352_3869453_-	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_009332745.1\|3869539_3869914_-	chorismate mutase	NA	NA	NA	NA
WP_019380389.1\|3869978_3871055_-	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	3.6e-22	25.7
WP_009332747.1\|3871054_3872227_-	chorismate synthase	A0A291AU41	Pandoravirus	1.5e-45	37.1
WP_019380388.1\|3872435_3873209_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_019380387.1\|3873330_3873777_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.2e-27	45.8
WP_019380386.1\|3873944_3874907_-	heptaprenyl diphosphate synthase component II	NA	NA	NA	NA
WP_009332751.1\|3874990_3875692_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_019380385.1\|3875695_3876505_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_019380384.1\|3876785_3877022_-	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
WP_009332754.1\|3877142_3877709_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	1.0e-47	55.3
WP_009332755.1\|3877927_3878200_-	non-specific DNA-binding protein Hbs	A7KV42	Bacillus_phage	1.6e-30	80.0
WP_019380383.1\|3878637_3880116_-	stage IV sporulation protein A	NA	NA	NA	NA
WP_019380381.1\|3880465_3881179_-	hypothetical protein	NA	NA	NA	NA
WP_019380380.1\|3881204_3881408_-	DUF2768 domain-containing protein	NA	NA	NA	NA
WP_026041599.1\|3881651_3882713_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_009332760.1\|3882808_3884119_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_009332761.1\|3884356_3884542_-	hypothetical protein	NA	NA	NA	NA
WP_009332762.1\|3884545_3885433_-	YIEGIA domain-containing protein	NA	NA	NA	NA
WP_009332763.1\|3885429_3886038_-	hypothetical protein	NA	NA	NA	NA
WP_009332764.1\|3886185_3886329_+	YpzI family protein	NA	NA	NA	NA
WP_009332765.1\|3886709_3887771_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_009332766.1\|3887783_3888923_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_009332767.1\|3889280_3889862_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_026041598.1\|3889858_3890539_-	(d)CMP kinase	NA	NA	NA	NA
WP_009332769.1\|3890729_3890912_-	YpfB family protein	NA	NA	NA	NA
WP_009332770.1\|3891002_3891662_-	flagellar brake domain-containing protein	NA	NA	NA	NA
WP_009332771.1\|3891809_3893159_-	germination protein YpeB	NA	NA	NA	NA
WP_009332772.1\|3893173_3894013_-	spore cortex-lytic enzyme	A0A172JHR8	Bacillus_phage	2.4e-21	42.5
WP_009332773.1\|3894138_3894828_-\|protease	intramembrane metalloprotease PrsW	NA	NA	NA	NA
WP_019380375.1\|3894960_3895929_+	asparaginase	NA	NA	NA	NA
WP_026041597.1\|3895960_3896938_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
WP_019380373.1\|3897340_3898615_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_009332777.1\|3899033_3899615_-	genetic competence negative regulator	NA	NA	NA	NA
WP_009332778.1\|3899738_3900644_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_009332779.1\|3900715_3901486_-	metallophosphoesterase family protein	NA	NA	NA	NA
WP_009332780.1\|3901514_3901919_-	hypothetical protein	NA	NA	NA	NA
WP_019380372.1\|3901978_3902611_-	CBS domain-containing protein	NA	NA	NA	NA
WP_019380371.1\|3902757_3902982_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_009332783.1\|3902984_3903245_+\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_009332784.1\|3903321_3903891_+	manganese catalase family protein	NA	NA	NA	NA
WP_019380370.1\|3903948_3904407_-	YpbF family protein	NA	NA	NA	NA
WP_019380369.1\|3904499_3905243_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_019380368.1\|3905297_3905921_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_7

4279654 : 4338652

Bacillus_phage(37.5%)

tRNA,integrase,protease,coat

attL 4275129:4275147|attR 4337612:4337630

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4275129:4275147	attL	NA	NA	NA	NA
WP_009333094.1\|4279654_4280794_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.0e-83	44.0
WP_019382917.1\|4280885_4281914_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_009333097.1\|4281941_4282148_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_019382918.1\|4282144_4283146_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	3.6e-08	24.1
WP_019382919.1\|4283199_4283811_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_019382920.1\|4283973_4284537_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0T6D2	Bacillus_phage	5.9e-32	43.2
WP_019382921.1\|4284776_4285325_-	intercompartmental signaling factor BofC	NA	NA	NA	NA
WP_009333102.1\|4285488_4286232_-	YhcN/YlaJ family sporulation lipoprotein	NA	NA	NA	NA
WP_033196616.1\|4286342_4287335_-	phosphotransferase	NA	NA	NA	NA
WP_064328224.1\|4287318_4289328_-\|coat	SafA/ExsA family spore coat assembly protein	NA	NA	NA	NA
WP_019380311.1\|4289749_4290856_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_019380310.1\|4291163_4292000_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_019380309.1\|4291968_4293552_-	L-aspartate oxidase	NA	NA	NA	NA
WP_019380308.1\|4293693_4294836_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_009333110.1\|4294901_4295444_+	transcription repressor NadR	NA	NA	NA	NA
WP_019380307.1\|4295511_4296390_-	prephenate dehydratase	NA	NA	NA	NA
WP_009333112.1\|4296521_4296977_-	ACT domain-containing protein	NA	NA	NA	NA
WP_009333113.1\|4297002_4298295_-	GTPase ObgE	NA	NA	NA	NA
WP_009333114.1\|4298436_4298988_-	sporulation initiation phosphotransferase B	NA	NA	NA	NA
WP_009333115.1\|4299226_4299520_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_009333116.1\|4299520_4299859_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_009333117.1\|4299872_4300181_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_026041595.1\|4300471_4301926_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_009333121.1\|4301980_4302847_-	M50 family metallopeptidase	NA	NA	NA	NA
WP_009333122.1\|4302839_4303616_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_019380305.1\|4303753_4304557_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_009333124.1\|4304558_4305236_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_019380304.1\|4305509_4306025_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_019380303.1\|4306021_4306906_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_009333129.1\|4307084_4308107_-	rod shape-determining protein	NA	NA	NA	NA
WP_009333132.1\|4308267_4308957_-	DNA repair protein RadC	NA	NA	NA	NA
WP_019380302.1\|4309008_4309578_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_019380301.1\|4309810_4310890_-	hypothetical protein	NA	NA	NA	NA
WP_026041594.1\|4311084_4311837_-	A24 family peptidase	NA	NA	NA	NA
WP_019380298.1\|4312117_4313767_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.4e-18	36.6
WP_019380297.1\|4313919_4315227_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_019380296.1\|4315299_4317945_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	2.4e-160	42.6
WP_009333146.1\|4318701_4319760_-\|coat	spore coat protein YsxE	NA	NA	NA	NA
WP_019380293.1\|4319869_4321141_-	stage VI sporulation protein D	NA	NA	NA	NA
WP_162272014.1\|4321395_4321566_-	hypothetical protein	NA	NA	NA	NA
WP_009333149.1\|4321645_4322932_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_009333151.1\|4322996_4323977_-	porphobilinogen synthase	NA	NA	NA	NA
WP_019380292.1\|4323976_4324759_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_009333155.1\|4324755_4325691_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_009333156.1\|4326246_4327080_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_009333158.1\|4327094_4328444_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_009333160.1\|4328672_4329158_+	hypothetical protein	NA	NA	NA	NA
WP_175502146.1\|4329630_4330353_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-29	39.5
WP_175502145.1\|4330382_4331009_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_019383241.1\|4331111_4331897_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_009333164.1\|4332226_4332808_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_009333165.1\|4332804_4335132_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.1e-176	44.2
WP_009333166.1\|4335417_4337085_-\|protease	ATP-dependent protease LonB	NA	NA	NA	NA
WP_009333167.1\|4337386_4338652_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.2e-149	65.2
4337612:4337630	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection