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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_018607 Brachyspira pilosicoli B2904, complete sequence 4 crisprs DinG,csa3 0 2 1 0

Results visualization

1. NC_018607
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018607_1 154888-154964 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018607_2 456722-456930 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018607_3 1042841-1042954 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018607_4 1440047-1440194 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_018607_2 2.1|456766|22|NC_018607|PILER-CR 456766-456787 22 KT325596 Uncultured bacterium plasmid pFK2-7, complete sequence 34274-34295 1 0.955
NC_018607_2 2.1|456766|22|NC_018607|PILER-CR 456766-456787 22 NZ_CP010903 Acinetobacter nosocomialis strain 6411 plasmid p6411-66.409kb, complete sequence 47162-47183 1 0.955
NC_018607_2 2.1|456766|22|NC_018607|PILER-CR 456766-456787 22 NC_019217 Uncultured bacterium HHV216 plasmid pHHV216, complete sequence 24303-24324 1 0.955
NC_018607_2 2.1|456766|22|NC_018607|PILER-CR 456766-456787 22 NC_019299 Uncultured bacterium HH1107 plasmid pHH1107, complete sequence 24303-24324 1 0.955
NC_018607_2 2.1|456766|22|NC_018607|PILER-CR 456766-456787 22 NZ_CP044465 Acinetobacter schindleri strain HZE23-1 plasmid pHZE23-1-2, complete sequence 28481-28502 1 0.955
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 4074-4108 6 0.829
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NZ_CP044536 Borrelia sp. CA690 plasmid lp54, complete sequence 12805-12839 8 0.771
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NZ_CP009059 Borreliella afzelii K78 plasmid lp54, complete sequence 15294-15328 8 0.771
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NZ_CP018745 Borreliella garinii strain CIP 103362 isolate 20047 plasmid p_lp54_linear 14765-14799 8 0.771
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NZ_CP028862 Borreliella garinii strain 20047 plasmid lp54, complete sequence 42689-42723 8 0.771
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NZ_CP009214 Borreliella afzelii Tom3107 plasmid lp54, complete sequence 42970-43004 8 0.771
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 NC_017241 Borreliella afzelii PKo plasmid lp54, complete sequence 15158-15192 8 0.771
NC_018607_4 4.2|1440163|35|NC_018607|PILER-CR 1440163-1440197 35 MN692985 Marine virus AFVG_117M57, complete genome 45015-45049 9 0.743

1. spacer 2.1|456766|22|NC_018607|PILER-CR matches to KT325596 (Uncultured bacterium plasmid pFK2-7, complete sequence) position: , mismatch: 1, identity: 0.955

attttttacagccttagcaact	CRISPR spacer
attttttacagccttatcaact	Protospacer
**************** *****

2. spacer 2.1|456766|22|NC_018607|PILER-CR matches to NZ_CP010903 (Acinetobacter nosocomialis strain 6411 plasmid p6411-66.409kb, complete sequence) position: , mismatch: 1, identity: 0.955

attttttacagccttagcaact	CRISPR spacer
attttttacagccttatcaact	Protospacer
**************** *****

3. spacer 2.1|456766|22|NC_018607|PILER-CR matches to NC_019217 (Uncultured bacterium HHV216 plasmid pHHV216, complete sequence) position: , mismatch: 1, identity: 0.955

attttttacagccttagcaact	CRISPR spacer
attttttacagccttatcaact	Protospacer
**************** *****

4. spacer 2.1|456766|22|NC_018607|PILER-CR matches to NC_019299 (Uncultured bacterium HH1107 plasmid pHH1107, complete sequence) position: , mismatch: 1, identity: 0.955

attttttacagccttagcaact	CRISPR spacer
attttttacagccttatcaact	Protospacer
**************** *****

5. spacer 2.1|456766|22|NC_018607|PILER-CR matches to NZ_CP044465 (Acinetobacter schindleri strain HZE23-1 plasmid pHZE23-1-2, complete sequence) position: , mismatch: 1, identity: 0.955

attttttacagccttagcaact	CRISPR spacer
attttttacagccttatcaact	Protospacer
**************** *****

6. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 6, identity: 0.829

tcttctaa---ctgttttattttttctttatatttatc	CRISPR spacer
---tctaaattttgttttaatttttctttatatttatt	Protospacer
   *****   .******* *****************.

7. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NZ_CP044536 (Borrelia sp. CA690 plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.771

tcttctaactgttttattttttctttatatttatc	CRISPR spacer
ttttctaactcttttattttttctttaagaatttt	Protospacer
*.******** **************** .  * *.

8. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.771

tcttctaactgttttattttttctttatatttatc	CRISPR spacer
ttttctaattcttttattttttctttaagtatttt	Protospacer
*.******.* **************** .* * *.

9. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NZ_CP018745 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid p_lp54_linear) position: , mismatch: 8, identity: 0.771

tcttctaactgttttattttttctttatatttatc	CRISPR spacer
ttttctaattcttttattttttctttaagtatgtt	Protospacer
*.******.* **************** .* *.*.

10. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NZ_CP028862 (Borreliella garinii strain 20047 plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.771

tcttctaactgttttattttttctttatatttatc	CRISPR spacer
ttttctaattcttttattttttctttaagtatgtt	Protospacer
*.******.* **************** .* *.*.

11. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NZ_CP009214 (Borreliella afzelii Tom3107 plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.771

tcttctaactgttttattttttctttatatttatc	CRISPR spacer
ttttctaattcttttattttttctttaagtatttt	Protospacer
*.******.* **************** .* * *.

12. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to NC_017241 (Borreliella afzelii PKo plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.771

tcttctaactgttttattttttctttatatttatc	CRISPR spacer
ttttctaattcttttattttttctttaagtatttt	Protospacer
*.******.* **************** .* * *.

13. spacer 4.2|1440163|35|NC_018607|PILER-CR matches to MN692985 (Marine virus AFVG_117M57, complete genome) position: , mismatch: 9, identity: 0.743

tcttctaactgttttattttttctt-tatatttatc	CRISPR spacer
tcttctaattgttttatttcttcttctatggccgc-	Protospacer
********.**********.***** ***. .... 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1994918 : 2029773 34 Synechococcus_phage(16.67%) tRNA,tail,protease,integrase,head,capsid attL 2000422:2000439|attR 2017592:2017609
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage