CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018664	Gottschalkia acidurici 9a, complete sequence	5 crisprs	cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,csa3,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	0	9	2	0
NC_018657	Gottschalkia acidurici 9a plasmid pCuri3, complete sequence	0 crisprs	NA	0	0	0	0

1. NC_018664

CRISPR-Cas detection and classification

Crispr_ID: NC_018664_1

• CRISPR_ID: NC_018664_1
• CRISPR_location: 264791-264943
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_018664_1

Consensus_repeat	Method
AGGACAAAAAAGTCTTGAAACAAGACA	CRISPRCasFinder

spacers of NC_018664_1

>1.1|264818|36|NC_018664|CRISPRCasFinder
GAGAAACTTAGAAGATGGGCAGAAAAGTCTTGAAGC
>1.2|264881|36|NC_018664|CRISPRCasFinder
AAAAAATCTTGAAACAAGACAAAAGAATTTAGAAGA

CRISPR arrays and Neighbor proteins around NC_018664_1

CRISPR arrays

The CRISPR arrays of NC_018664_1

>merge|NC_018664|1|264791-264943|CRISPRCasFinder
AGGACAAAAAAGTCTTGAAACAAGACAGAGAAACTTAGAAGATGGGCAGAAAAGTCTTGAAGCAAGACAAAAGAACCTGGAAGAAGGACAAAAAAATCTTGAAACAAGACAAAAGAATTTAGAAGAGGGACAGAAGAGTCTTGAAACAAGGCA

>NC_018664|1|1|264791-264943|CRISPRCasFinder
AGGACAAAAAAGTCTTGAAACAAGACA	GAGAAACTTAGAAGATGGGCAGAAAAGTCTTGAAGC
AAGACAAAAGAACCTGGAAGAAGGACA	AAAAAATCTTGAAACAAGACAAAAGAATTTAGAAGA
GGGACAGAAGAGTCTTGAAACAAGGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_018664.1|WP_014966472.1|260859_261222_+|flagellar-protein-FlaG	unknown	unknown	gnl|CDD|377090
NC_018664.1|WP_014966480.1|270217_272374_+|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl|CDD|225094
NC_018664.1|WP_014966475.1|263517_263964_+|flagellar-export-chaperone-FlgN	unknown	unknown	gnl|CDD|377465
NC_018664.1|WP_144276048.1|268961_270045_+|peptide-chain-release-factor-2	unknown	unknown	gnl|CDD|234799
NC_018664.1|WP_014966477.1|265376_265907_+|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl|CDD|238308
NC_018664.1|WP_014966467.1|258586_259195_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014966468.1|259210_259408_+|YjfB-family-protein	unknown	unknown	gnl|CDD|379452
NC_018664.1|WP_041701355.1|266153_268901_+|preprotein-translocase-subunit-SecA	unknown	unknown	gnl|CDD|237259
NC_018664.1|WP_014966474.1|263117_263516_+|flagellar-export-chaperone-FliS	unknown	unknown	gnl|CDD|376819
NC_018664.1|WP_014966486.1|276647_277091_+|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl|CDD|273701
NC_018664.1|WP_014966466.1|257651_258344_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014966473.1|261237_263070_+|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl|CDD|236082
NC_018664.1|WP_187287412.1|275483_275942_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl|CDD|376771
NC_018664.1|WP_014966487.1|277155_278112_+|DUF2877-domain-containing-protein	unknown	unknown	gnl|CDD|378658
NC_018664.1|WP_014966470.1|259931_260261_+|flagellar-protein	unknown	unknown	gnl|CDD|163538
NC_018664.1|WP_014966482.1|273201_274362_+|amidohydrolase	unknown	unknown	gnl|CDD|238634
NC_018664.1|WP_014966471.1|260397_260781_+|CBS-domain-containing-protein	unknown	unknown	gnl|CDD|341358
NC_018664.1|WP_014966469.1|259528_259876_+|flagellar-protein	unknown	unknown	gnl|CDD|163538
NC_018664.1|WP_014966483.1|274713_275301_+|ECF-transporter-S-component	unknown	unknown	gnl|CDD|226129
NC_018664.1|WP_014966481.1|272429_273170_+|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_018664.1|WP_014966472.1|260859_261222_+|flagellar-protein-FlaG	gnl|CDD|377090	pfam03646, FlaG, FlaG protein. Although important for flagella the exact function of this protein is unknown.	4.69376e-20
NC_018664.1|WP_014966480.1|270217_272374_+|RNA-binding-transcriptional-accessory-protein	gnl|CDD|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NC_018664.1|WP_014966475.1|263517_263964_+|flagellar-export-chaperone-FlgN	gnl|CDD|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	0.000113292
NC_018664.1|WP_014966477.1|265376_265907_+|ribosome-associated-translation-inhibitor-RaiA	gnl|CDD|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	2.04405e-31
NC_018664.1|WP_014966468.1|259210_259408_+|YjfB-family-protein	gnl|CDD|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	7.68949e-09
NC_018664.1|WP_041701355.1|266153_268901_+|preprotein-translocase-subunit-SecA	gnl|CDD|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_018664.1|WP_014966474.1|263117_263516_+|flagellar-export-chaperone-FliS	gnl|CDD|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	2.02709e-48
NC_018664.1|WP_014966486.1|276647_277091_+|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl|CDD|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.57662e-53
NC_018664.1|WP_144276048.1|268961_270045_+|peptide-chain-release-factor-2	gnl|CDD|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_018664.1|WP_014966473.1|261237_263070_+|flagellar-filament-capping-protein-FliD	gnl|CDD|236082	PRK07737, fliD, flagellar hook-associated protein 2.	2.344e-85
NC_018664.1|WP_187287412.1|275483_275942_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl|CDD|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	1.10905e-62
NC_018664.1|WP_014966487.1|277155_278112_+|DUF2877-domain-containing-protein	gnl|CDD|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	1.02245e-35
NC_018664.1|WP_014966470.1|259931_260261_+|flagellar-protein	gnl|CDD|163538	TIGR03826, YvyF, flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.	1.18392e-10
NC_018664.1|WP_014966482.1|273201_274362_+|amidohydrolase	gnl|CDD|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	6.04039e-151
NC_018664.1|WP_014966471.1|260397_260781_+|CBS-domain-containing-protein	gnl|CDD|341358	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.10575e-26
NC_018664.1|WP_014966469.1|259528_259876_+|flagellar-protein	gnl|CDD|163538	TIGR03826, YvyF, flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.	8.13649e-07
NC_018664.1|WP_014966483.1|274713_275301_+|ECF-transporter-S-component	gnl|CDD|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	2.64117e-39
NC_018664.1|WP_014966481.1|272429_273170_+|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.13511e-49

Protein sequences

>NC_018664.1|WP_014966475.1|263517_263964_+|flagellar-export-chaperone-FlgN
MEKNILNELMMLVDKKLNYLEEILSITSQQKQAITDEDVERLSSLLDKKDILIRNIDEIDSIYKEKSLNKLLEDDILTEKLKIIQALLNNIKLVDDENNKNLNRAIEDMGGKLKEVRQGQRAMKGYSNSDPYASFTAQGGTLFIDQDS
>NC_018664.1|WP_014966474.1|263117_263516_+|flagellar-export-chaperone-FliS
MAINNPYNQYKQNSVTTASPEELTLMLYNGAIKFVNIAKIEMEAKNIERTNEAIVRSQDIIRELNGSLNMNYPISENLRTLYTFILEKLIDANIQKDIKIIEEILPIIEEMRDTWKLVIEEVKRQKFAQGAR
>NC_018664.1|WP_014966473.1|261237_263070_+|flagellar-filament-capping-protein-FliD
MALRLSGLASGIDTDSMVKELMKAERVKVDRVEQQKQTLLWKTEIYNSLNKSFANFILNARKDFGYSGVRSSGISWHKKAMSSNENIATASAKLGTITGKHDINVERIAEGISAVSKSDISKVKDGKKLTGNVKEQFGLESNDVIDFKITTDKGTVRFVFGETTIDGLEDGKVNGVDTIHINKSLDELKLSDIVSTINSASIKDDKGTVLSGLGMKTSYDSGIDRFFMQTTSTGSDASLSIEAEAGKPAETFFNALNLNVKSYEYDSNNELIYDNVNGEEIPRKLEGSLVLNTGIYKGINAKLSYNGVDNIEKQSNNFEINGVVFNIKDKGQFSVNVTTDADTIVEKVKNFIDEYNKIIEKAGSLLVEKVDRNYKPLTSEEKEAMTEKDIELWEKKARNGILRNDNTLNNTLSGMRSDIYEKVETSSGVFKLLTDIGISTQKYSSGSTGGKLELNEEALRAAIDRDADGVMEMLFKESDEYFYSDDTKLSETQLKEKRANSGIVTRIFDNLTLGIKDLVDRAGTGSEPDLFRQVKSNLLIDFVTGTNNLSKKGSVGYLEDEVLKLEKRIDDLNTILYRREMSYYSRFTAMEKAMQQMNSQSSWLAQQLGG
>NC_018664.1|WP_014966472.1|260859_261222_+|flagellar-protein-FlaG
MNISNSVTYEQSQHSVGDISVIADSTDKEIDLQLRDSIERNKEKDINIEQIESILNKSNKQMLMYDRRLDISIHEKTKQIMVKVIDVNTDEVIREIPPEKVLDIVAKRKETLGLLMDKKI
>NC_018664.1|WP_014966471.1|260397_260781_+|CBS-domain-containing-protein
MLIKDIMTKPAITVSANDTIGDILYIMSKNNINGAPVIDKENSLIGMIVKADIYRFMIEPGHIADCPVDWVMSKSPITCESEEYIDEVARRLRENNIVAMPVLEDKKVVGVISFEDIIDHFLESYSK
>NC_018664.1|WP_014966470.1|259931_260261_+|flagellar-protein
MSRQVCKRCNRIFDGNKVGYCDKCYDKNEKEYNLILEYLKKNPDAIVLEIIDKTGVSLKTLNRFVEEGGLSYTESNIKPEDIESGEYLKIISRILKGRGKFHTSITDDW
>NC_018664.1|WP_014966469.1|259528_259876_+|flagellar-protein
MAYKICKKCQRFFSENGKSYCDECDEKLNVSHSKIKEYLEEFPNSSILEIVNNTGVKLKDVNIFLAEGGATYSEVFNENISLNLREEEINKEIDKFNKKERAKIRNKFVPRSLRR
>NC_018664.1|WP_014966468.1|259210_259408_+|YjfB-family-protein
MDIAALSIGLSQIKIAQQANLSIMKMAMDSVKIQTSDLTQMMDINTKMMEQSVNPHIGGSIDIKL
>NC_018664.1|WP_014966467.1|258586_259195_+|hypothetical-protein
MKIYILDKEVVLENKLESIETIFNMINEALYENEKDYNFSYMIIDGKDIYDEFEYYIEDNIKNISEIKVIVLTLKELIQDNIVTTKDYIDRAIPSLNKLSERFHTEPREEDWHEIGDLFEGVGWLLESYQNIDSLEDLNNIISSYEIWNEYVKEVRSLNDLLIEIEQAMKNNNITNIGDLLSQKIVPIFKKMNEKLESLLII
>NC_018664.1|WP_014966466.1|257651_258344_+|hypothetical-protein
MKDFLKNRQHSRSEGLIVDLNERLFYYLGKISLFTLLRRNRKIKDMHNFVDSWVISNILLSIIMSYLIVKFINNKVILSLAFFYAFLRVFEIIVYQINVNLFDRYRSKLRNKDYRIKSPTRTVILLLYNYIEIIFWYVIMIVAILKLSNCKDISRYKYYIESSFLCLTTLNYELVASMAKSQYQVLSSIAILEVVSGLVMTIISLANFIGKLPSEYRKEFNKKITKKRNS
>NC_018664.1|WP_014966477.1|265376_265907_+|ribosome-associated-translation-inhibitor-RaiA
MKLTISGKQMEVTDALKVVIDEKFERLDKYFHKEIPVNVTLSVQKGRQIVEATIPFSGAMLRAEEATPDMYASIDKVIDVLERQVRKHKTKLQRRTKAGETIRFENIQVLPYNEDEESKIVKTKKFTIKPMDEEEAILQMELLRHNFFVYIDGQTDEVKVVYKRKDGNYGLIEPQY
>NC_018664.1|WP_041701355.1|266153_268901_+|preprotein-translocase-subunit-SecA
MRWGKLKTFLEKIFGSHSDREIKRIEPIVNKIESLDSEMQKLSDEQLRGKTDEFRERLSGSECCLDDILPEAFAVMREAAYRVLGMKHYRVQLIAGIVLHQGRIAEMKTGEGKTLMATLPVYLNALSGKGVHVVTVNDYLAERDKEQMGKVYEFLGLSVGCILNSMDSSERRIAYGADITYGTNNEFGFDYLRDNMVIYKHEMVQRDLNYCIVDEVDSILVDEARTPLIISGMGDKSTKLYSIADHFVKTLKGRSMDPNEKKDMFDREYVVETVDFVIDEKAKTVTLTEVGVEKAEKYFSVENLSDPTNMEILHHINQALKAQNTMKRDIDYVVKDGEILIVDEFTGRLMHGRRYSEGLHQAIEAKEGLEVNRESKTLATITFQNYFRMYKKLSGMTGTAKTEEAEFREIYNVDVIEIPTNKPIIREDNPDAVYKTLEAKLNAVVNDIKEKNEKGQPVLVGTISIEMSEVLSKLLKRVNVKHEVLNAKQHDREAEIVAQAGRFGGVTIATNMAGRGTDIVLGGNPEFVAKVEMRKKGYSEELITEVDSFVDTEDEEILEARKVYRETLEKVKVQTDEENKKVIEAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFFVSLEDDLMRLFGGDRVKSMIESLGMPDDEALEHRMLSKSIENAQKKIEGNNFSIRKHVLQYDDVMNKQREVIYAERRRVLEGENLKEHVMSMVEGFLQSGIDIYTKDEKYPEEWDFAGLENYINNVIPMGELNIENVESLTKESLVDTLKEKARLLYEQKEEEVGEEALRELERVILLRMVDTKWMDHIDAMDQLKQGIGLRAMGQQDPVRAYQTEGFDMFEEMINSIQEDTLKNLYHLQRAENIERERVAEPISTSHGDEEVKKKPVVVKEKIGRNDPCPCGSGKKYKVCCGK
>NC_018664.1|WP_144276048.1|268961_270045_+|peptide-chain-release-factor-2
MINSVKETLEEIRVSLDIDELNKELCELEDNTMKPDFWNDSENAQKILQEIKFKKDKVTEYDEIVNSIEEVEFTIELLNECEDDDICKELERKISFLEKRVDNFKIATLLSGDYDSNNAILSIHSGAGGLEAQDWAEMLLRMYTRWADHREYTVETLDILPDTEGGIKSVTILVKGINAYGYLKSEKGVHRLVRISPFDSSGRRHTSFASVDIFPELDENVEVDINPNDLRIDTYRSGGAGGQHVNTTDSAIRITHIPTGVVVQCQNERSQHSNKATAMRMLMAKLIELKETERKETIEDLQGTYNQISWGSQIRSYVFHPYNLVKDHRTNAEVGNTDRVMDGSIDIFMNEYLKYRSKNI
>NC_018664.1|WP_014966480.1|270217_272374_+|RNA-binding-transcriptional-accessory-protein
MNINEILIKEFNIKKFQVENTIKLIDEGNTIPFIARYRKEQTGELSDVVLRELYERLIYLRNLESRKEEVIRLIEEQGKLTEELKKDIWSANTLQKIDDLYRPFRPKRRTRATIAKEKGLEPLADIILDQSLTEGDIKDIASKYINDEKEVNSVEDALTGAMDIIAEIISDNAGYRETIRNRLYNKSDILTQAVDDKEKSVYEMYYEYSEPVRNIANHRILAINRGEKEKFIRVKIDSLDEDIVSILNSKVIVNKDAITTEYLLSSIEDSYKRLIFPSIEREIRNILTERAEEHAIKVFGKNLSPLLMQSPIKGKVVMGFDPGFRTGCKVAVVDDTGKLLDFTTVYPTEPQNKVEETKKELINLINKYDIDMIAIGNGTASRESETIIADMIKEIDKKVYFTIVSEAGASIYSASKVANEEYPDINVSIRGAISIAKRLQDPLAELVKIDPKHVGVGQYQHDLNQGKLDETLKGVVEDCVNSVGIDLNTASVSLLSYVSGISPSVAKNIVSYREEAGRFKNRKELLKVKRLGQATYTQCAGFLRLADSENPLDNTSVHPESYDVTLKLVEKLGYSKEDIKGGKLKSIDSKVSTEESLEAIAQELETGVPTLRDIVQEIKKPGRDPREDMPIPVFRSDVLKIEDLKEDMILTGTVRNVVDFGAFIDIGVKEDGLVHISNLSDKFVKNPMDIISVGDIVKVKIIEVDIPKGRIALSMKGI
>NC_018664.1|WP_014966481.1|272429_273170_+|HAMP-domain-containing-histidine-kinase
MEKSKDFFSMDKDFRYQRLSTLGELAGEISHDFNNSLTTILGFTQIIMNDKRLDKDLKSYMEMIYESALDGEAIVSRIKNFSKNEKSDNMSLVEVNDVVESTIKMASIKWKNINEKKGVKIEVIENLQSKSKINCNAREIREITLNIILNAIDSLESGGQLKIETYDEGDKVVIKVQDTGIGMDEETMSNIFEPFFSTKGEKGTGLGLSICKKIIEKHNGTIEVDSKIGVGTTFKIYMKRYRTDIV
>NC_018664.1|WP_014966482.1|273201_274362_+|amidohydrolase
MILIKNAKIYTMQEEVIENGSILIKEGKIKEIIKKEAYSKGIDDLDGVEIIDANDCIVMPGIIDAHCHLGMIEDGMGFEGDDTNEMSDPVTPELRAIDGINPMDRGFEEAYQNGITTVATGPGSSNVICGQFAAIKTYGKRIDDMIIKEPVAMKVALGENPKTIYGKEKRYPMTRMATAAILRETLFKAREYMNSEKPNFDMKMEAMAKVLTKEIPLKVHAHRTDDIFTALRIAKEFDVEITLDHCTEGHLISEYIKQEGKYAIVGPSLSDRSKIELRNLTFETPGVLHNAGVKIAIMTDSPETPVYYLPLCAGLAVKSGLDEMEALKAITINPAEILGIDERVGSIEVGKDADIVIFDGHPLRDIMCKVLMTIIDGKIVYNQIDG
>NC_018664.1|WP_014966483.1|274713_275301_+|ECF-transporter-S-component
MSKRLSLSTLVKVSLLGAISFIIMMVEFPLWFAPEFYKIDFSDLPALIGALSLGPVAGIMIELIKNLLNVVFTGSITGGIGEFANFLIGALYVGIAGYIYNKNKTKSTAIKGMILGTIVMSIIGSLLNYYVLLPIYSKVMPVEEILQWAKAVNSLVVDLKTLVIFAVLPFNLLKGAVVSIITLPIYKRLSAILHK
>NC_018664.1|WP_187287412.1|275483_275942_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MLKISTKSPEETEEIGYNIGKSLSGGEIICMVGDLGAGKTTMTKSLARGLEIEDYITSPTFTIVNEYEGRLKLYHFDVYRIGDVEEMYDLGYEEYFYSDGVCIIEWSNLIEDILPKERITIEIKRGIDDNTRDIIIDGTGQKYEDLIKELNY
>NC_018664.1|WP_014966486.1|276647_277091_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MNDIIVKEMSYEDIDGVVEVENMSFVTPWSKESFENELKNKLAVYVVAKDDDRVVAYGGVWLIIDEGHVTNIAVHTQYRGKEIGSLILDELIRLCKQKNMTSMTLEVRKSNEAAKNLYKKFNFEEIGIRPKYYSDNNEDAIIMWLTF
>NC_018664.1|WP_014966487.1|277155_278112_+|DUF2877-domain-containing-protein
MQANYMCIDLMNRLDNGDHLEGNISSVYKCLFTVITEDNDLIYFLNNKKYIAPMSVVLEDIGSFKDLNLTQDTKVLFNKDKITIDSHKIEIEIDNCLPWDASPSLPSKETSEEIIKNNLLTLEEGIFKHGKHEGIAPLIFNIGEYIEELKPLSEMNIHNNLYSSFISNRIIEFIFEIVDKDIENISNTVKEFIGFGPGVTPSSDDFLCGFMNSLVYIGMYYNLDLEKIYKLNKDMISKIEINKEEISHDLLISSAEGKAQKMIINLIHSVIYEEDKEEVCQSIREAISFGDMSGTDMVCGIYLGIRLITNNNIRDMFI

Crispr_ID: NC_018664_2

• CRISPR_ID: NC_018664_2
• CRISPR_location: 704762-706990
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 33 spacers
• Cas_protein_info: cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,WYL

Consensus repeat of NC_018664_2

Consensus_repeat	Method
GCATTAATAGAACTAAAGTAGAATGTAAAT	CRISPRCasFinder
GNATTAATAGAACTAAAGTAGAATGTAAAT	CRT
ATTAATAGAACTAAAGTAGAATGTAAAT	PILER-CR

spacers of NC_018664_2

>2.1|704792|36|NC_018664|CRISPRCasFinder,CRT
ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTC
>2.2|704858|36|NC_018664|CRISPRCasFinder,CRT
ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCG
>2.3|704924|37|NC_018664|CRISPRCasFinder,CRT
ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTG
>2.4|704991|36|NC_018664|CRISPRCasFinder,CRT
GGATAAACACTAGCCAAATGACTAGGAGAAAAAACA
>2.5|705057|36|NC_018664|CRISPRCasFinder,CRT
TTCATTGCCATCTCTGATGAAGCTAATGTACTTATC
>2.6|705123|37|NC_018664|CRISPRCasFinder,CRT
ATCCATCATACAATTCATCAAATGTAAATTGATCCTT
>2.7|705190|37|NC_018664|CRISPRCasFinder,CRT
GTTAGAATTGATGAATTATCAAGACAGGATCTTGACG
>2.8|705257|36|NC_018664|CRISPRCasFinder,CRT
CCACATTAGAGGTTTAATTGATAAGGTGCATACTTT
>2.9|705323|37|NC_018664|CRISPRCasFinder,CRT
CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAA
>2.10|705390|36|NC_018664|CRISPRCasFinder,CRT
AAAATTTAAACACCCACTAAGTCTTTCATACTTACT
>2.11|705456|37|NC_018664|CRISPRCasFinder,CRT
ATGATAGAGATGAAATGTTGAATATCAAATCTTACTT
>2.12|705523|36|NC_018664|CRISPRCasFinder,CRT
ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAG
>2.13|705589|36|NC_018664|CRISPRCasFinder,CRT
TCTATTGAATTTCTGAAAAGATTTATTCATTTTATC
>2.14|705655|36|NC_018664|CRISPRCasFinder,CRT
TAAAAATAATAAGTAATTTATTTTATTTTCATATTA
>2.15|705721|36|NC_018664|CRISPRCasFinder,CRT
CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATC
>2.16|705787|37|NC_018664|CRISPRCasFinder,CRT
AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAG
>2.17|705854|37|NC_018664|CRISPRCasFinder,CRT
AATCGAATAGGCATAATAAATAGCAATAGCAACAAGC
>2.18|705921|37|NC_018664|CRISPRCasFinder,CRT
ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTA
>2.19|705988|36|NC_018664|CRISPRCasFinder,CRT
TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTA
>2.20|706054|36|NC_018664|CRISPRCasFinder,CRT
ATGCAACGAATGCTATAATCTTTCATTTCTGATATC
>2.21|706120|36|NC_018664|CRISPRCasFinder,CRT
ATATAGTAAAACATCATTCTTCCTTGACAACTGATT
>2.22|706186|37|NC_018664|CRISPRCasFinder,CRT
AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCAT
>2.23|706253|37|NC_018664|CRISPRCasFinder,CRT
TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGC
>2.24|706320|37|NC_018664|CRISPRCasFinder,CRT
ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTC
>2.25|706387|39|NC_018664|CRISPRCasFinder,CRT
AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTT
>2.26|706456|36|NC_018664|CRISPRCasFinder,CRT
ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTA
>2.27|706522|37|NC_018664|CRISPRCasFinder,CRT
TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCAC
>2.28|706589|38|NC_018664|CRISPRCasFinder,CRT
GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCC
>2.29|706657|37|NC_018664|CRISPRCasFinder,CRT
ATATATGAGCAATGTGAAGTAATGCAATCCATATTCG
>2.30|706724|37|NC_018664|CRISPRCasFinder,CRT
GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGG
>2.31|706791|36|NC_018664|CRISPRCasFinder,CRT
TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTC
>2.32|706857|38|NC_018664|CRISPRCasFinder,CRT
TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTG
>2.33|706925|36|NC_018664|CRISPRCasFinder,CRT
TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATC
>2.34|704792|38|NC_018664|PILER-CR
ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTCGC
>2.35|704858|38|NC_018664|PILER-CR
ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCGGC
>2.36|704924|39|NC_018664|PILER-CR
ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTGGC
>2.37|704991|38|NC_018664|PILER-CR
GGATAAACACTAGCCAAATGACTAGGAGAAAAAACAGC
>2.38|705057|38|NC_018664|PILER-CR
TTCATTGCCATCTCTGATGAAGCTAATGTACTTATCGC
>2.39|705123|39|NC_018664|PILER-CR
ATCCATCATACAATTCATCAAATGTAAATTGATCCTTGC
>2.40|705190|39|NC_018664|PILER-CR
GTTAGAATTGATGAATTATCAAGACAGGATCTTGACGGC
>2.41|705257|38|NC_018664|PILER-CR
CCACATTAGAGGTTTAATTGATAAGGTGCATACTTTGC
>2.42|705323|39|NC_018664|PILER-CR
CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAAGC
>2.43|705390|38|NC_018664|PILER-CR
AAAATTTAAACACCCACTAAGTCTTTCATACTTACTGC
>2.44|705456|39|NC_018664|PILER-CR
ATGATAGAGATGAAATGTTGAATATCAAATCTTACTTGC
>2.45|705523|38|NC_018664|PILER-CR
ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAGGC
>2.46|705589|38|NC_018664|PILER-CR
TCTATTGAATTTCTGAAAAGATTTATTCATTTTATCGC
>2.47|705655|38|NC_018664|PILER-CR
TAAAAATAATAAGTAATTTATTTTATTTTCATATTAGC
>2.48|705721|38|NC_018664|PILER-CR
CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATCGC
>2.49|705787|39|NC_018664|PILER-CR
AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAGGC
>2.50|705854|39|NC_018664|PILER-CR
AATCGAATAGGCATAATAAATAGCAATAGCAACAAGCGC
>2.51|705921|39|NC_018664|PILER-CR
ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTAGC
>2.52|705988|38|NC_018664|PILER-CR
TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTAGC
>2.53|706054|38|NC_018664|PILER-CR
ATGCAACGAATGCTATAATCTTTCATTTCTGATATCGC
>2.54|706120|38|NC_018664|PILER-CR
ATATAGTAAAACATCATTCTTCCTTGACAACTGATTGC
>2.55|706186|39|NC_018664|PILER-CR
AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCATGC
>2.56|706253|39|NC_018664|PILER-CR
TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGCGT
>2.57|706320|39|NC_018664|PILER-CR
ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTCGT
>2.58|706387|41|NC_018664|PILER-CR
AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTTGT
>2.59|706456|38|NC_018664|PILER-CR
ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTAGT
>2.60|706522|39|NC_018664|PILER-CR
TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCACGT
>2.61|706589|40|NC_018664|PILER-CR
GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCCGT
>2.62|706657|39|NC_018664|PILER-CR
ATATATGAGCAATGTGAAGTAATGCAATCCATATTCGGT
>2.63|706724|39|NC_018664|PILER-CR
GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGGGT
>2.64|706791|38|NC_018664|PILER-CR
TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTCGT
>2.65|706857|40|NC_018664|PILER-CR
TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTGGT
>2.66|706925|38|NC_018664|PILER-CR
TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATCGT

CRISPR arrays and Neighbor proteins around NC_018664_2

CRISPR arrays

The CRISPR arrays of NC_018664_2

>merge|NC_018664|2|704762-706990|CRISPRCasFinder,CRT,PILER-CR
GCATTAATAGAACTAAAGTAGAATGTAAATATTCTTTAATTCTCTATATTTTTTTTGCTTATACTCGCATTAATAGAACTAAAGTAGAATGTAAATACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCGGCATTAATAGAACTAAAGTAGAATGTAAATATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTGGCATTAATAGAACTAAAGTAGAATGTAAATGGATAAACACTAGCCAAATGACTAGGAGAAAAAACAGCATTAATAGAACTAAAGTAGAATGTAAATTTCATTGCCATCTCTGATGAAGCTAATGTACTTATCGCATTAATAGAACTAAAGTAGAATGTAAATATCCATCATACAATTCATCAAATGTAAATTGATCCTTGCATTAATAGAACTAAAGTAGAATGTAAATGTTAGAATTGATGAATTATCAAGACAGGATCTTGACGGCATTAATAGAACTAAAGTAGAATGTAAATCCACATTAGAGGTTTAATTGATAAGGTGCATACTTTGCATTAATAGAACTAAAGTAGAATGTAAATCTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAAGCATTAATAGAACTAAAGTAGAATGTAAATAAAATTTAAACACCCACTAAGTCTTTCATACTTACTGCATTAATAGAACTAAAGTAGAATGTAAATATGATAGAGATGAAATGTTGAATATCAAATCTTACTTGCATTAATAGAACTAAAGTAGAATGTAAATACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAGGCATTAATAGAACTAAAGTAGAATGTAAATTCTATTGAATTTCTGAAAAGATTTATTCATTTTATCGCATTAATAGAACTAAAGTAGAATGTAAATTAAAAATAATAAGTAATTTATTTTATTTTCATATTAGCATTAATAGAACTAAAGTAGAATGTAAATCTTTCTAAGTTGGTGAATTTATCAGTACCAAACATCGCATTAATAGAACTAAAGTAGAATGTAAATAGTTTTACGATATATACTGAAGAAGAGCCACGAGAAGGCATTAATAGCACTAAAGTAGAATGTAAATAATCGAATAGGCATAATAAATAGCAATAGCAACAAGCGCATTAATAGAACTAAAGTAGAATGTAAATACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTAGCATTAATAGAACTAAAGTAGAATGTAAATTTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTAGCATTAATAGAACTAAAGTAGAATGTAAATATGCAACGAATGCTATAATCTTTCATTTCTGATATCGCATTAATAGAACTAAAGTAGAATGTAAATATATAGTAAAACATCATTCTTCCTTGACAACTGATTGCATTAATAGAACTAAAGTAGAATGTAAATAAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCATGCATTAATAGAACTAAAGTAGAATGTAAATTTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGCGTATTAATAGAACTAAAGTAGAATGTAAATATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTCGTATTAATAGAACTAAAGTAGAATGTAAATAAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTTGTATTAATAGAACTAAAGTAGAATGTAAATATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTAGTATTAATAGAACTAAAGTAGAATGTAAATTTCCACATAGTAGAAAATAGTGTACTTCTCAGACCACGTATTAATAGAACTAAAGTAGAATGTAAATGCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCCGTATTAATAGAACTAAAGTAGAATGTAAATATATATGAGCAATGTGAAGTAATGCAATCCATATTCGGTATTAATAGAACTAAAGTAGAATGTAAATGAAGATTTGAAGAAACAAACTAAACAATTTATAGAGGGTATTAATAGAACTAAAGTAGAATGTAAATTTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTCGTATTAATAGAACTAAAGTAGAATGTAAATTCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTGGTATTAATAGAACTAAAGTAGAATGTAAATTTTGGACAAGGTTATAAGTCTATGTCACCAGTAATCGTATTAATAGAACTACAATAGAATGTAAAT

>NC_018664|2|2|704762-706990|CRISPRCasFinder
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCG
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTG
GCATTAATAGAACTAAAGTAGAATGTAAAT	GGATAAACACTAGCCAAATGACTAGGAGAAAAAACA
GCATTAATAGAACTAAAGTAGAATGTAAAT	TTCATTGCCATCTCTGATGAAGCTAATGTACTTATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATCCATCATACAATTCATCAAATGTAAATTGATCCTT
GCATTAATAGAACTAAAGTAGAATGTAAAT	GTTAGAATTGATGAATTATCAAGACAGGATCTTGACG
GCATTAATAGAACTAAAGTAGAATGTAAAT	CCACATTAGAGGTTTAATTGATAAGGTGCATACTTT
GCATTAATAGAACTAAAGTAGAATGTAAAT	CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAA
GCATTAATAGAACTAAAGTAGAATGTAAAT	AAAATTTAAACACCCACTAAGTCTTTCATACTTACT
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATGATAGAGATGAAATGTTGAATATCAAATCTTACTT
GCATTAATAGAACTAAAGTAGAATGTAAAT	ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAG
GCATTAATAGAACTAAAGTAGAATGTAAAT	TCTATTGAATTTCTGAAAAGATTTATTCATTTTATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	TAAAAATAATAAGTAATTTATTTTATTTTCATATTA
GCATTAATAGAACTAAAGTAGAATGTAAAT	CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAG
GCATTAATAGCACTAAAGTAGAATGTAAAT	AATCGAATAGGCATAATAAATAGCAATAGCAACAAGC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTA
GCATTAATAGAACTAAAGTAGAATGTAAAT	TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTA
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATGCAACGAATGCTATAATCTTTCATTTCTGATATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATATAGTAAAACATCATTCTTCCTTGACAACTGATT
GCATTAATAGAACTAAAGTAGAATGTAAAT	AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCAT
GCATTAATAGAACTAAAGTAGAATGTAAAT	TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGC
GTATTAATAGAACTAAAGTAGAATGTAAAT	ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTC
GTATTAATAGAACTAAAGTAGAATGTAAAT	AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTT
GTATTAATAGAACTAAAGTAGAATGTAAAT	ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTA
GTATTAATAGAACTAAAGTAGAATGTAAAT	TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCAC
GTATTAATAGAACTAAAGTAGAATGTAAAT	GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCC
GTATTAATAGAACTAAAGTAGAATGTAAAT	ATATATGAGCAATGTGAAGTAATGCAATCCATATTCG
GTATTAATAGAACTAAAGTAGAATGTAAAT	GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGG
GTATTAATAGAACTAAAGTAGAATGTAAAT	TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTC
GTATTAATAGAACTAAAGTAGAATGTAAAT	TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTG
GTATTAATAGAACTAAAGTAGAATGTAAAT	TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATC
GTATTAATAGAACTACAATAGAATGTAAAT

>NC_018664|2|1|704762-706990|CRT
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCG
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTG
GCATTAATAGAACTAAAGTAGAATGTAAAT	GGATAAACACTAGCCAAATGACTAGGAGAAAAAACA
GCATTAATAGAACTAAAGTAGAATGTAAAT	TTCATTGCCATCTCTGATGAAGCTAATGTACTTATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATCCATCATACAATTCATCAAATGTAAATTGATCCTT
GCATTAATAGAACTAAAGTAGAATGTAAAT	GTTAGAATTGATGAATTATCAAGACAGGATCTTGACG
GCATTAATAGAACTAAAGTAGAATGTAAAT	CCACATTAGAGGTTTAATTGATAAGGTGCATACTTT
GCATTAATAGAACTAAAGTAGAATGTAAAT	CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAA
GCATTAATAGAACTAAAGTAGAATGTAAAT	AAAATTTAAACACCCACTAAGTCTTTCATACTTACT
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATGATAGAGATGAAATGTTGAATATCAAATCTTACTT
GCATTAATAGAACTAAAGTAGAATGTAAAT	ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAG
GCATTAATAGAACTAAAGTAGAATGTAAAT	TCTATTGAATTTCTGAAAAGATTTATTCATTTTATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	TAAAAATAATAAGTAATTTATTTTATTTTCATATTA
GCATTAATAGAACTAAAGTAGAATGTAAAT	CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAG
GCATTAATAGCACTAAAGTAGAATGTAAAT	AATCGAATAGGCATAATAAATAGCAATAGCAACAAGC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTA
GCATTAATAGAACTAAAGTAGAATGTAAAT	TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTA
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATGCAACGAATGCTATAATCTTTCATTTCTGATATC
GCATTAATAGAACTAAAGTAGAATGTAAAT	ATATAGTAAAACATCATTCTTCCTTGACAACTGATT
GCATTAATAGAACTAAAGTAGAATGTAAAT	AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCAT
GCATTAATAGAACTAAAGTAGAATGTAAAT	TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGC
GTATTAATAGAACTAAAGTAGAATGTAAAT	ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTC
GTATTAATAGAACTAAAGTAGAATGTAAAT	AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTT
GTATTAATAGAACTAAAGTAGAATGTAAAT	ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTA
GTATTAATAGAACTAAAGTAGAATGTAAAT	TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCAC
GTATTAATAGAACTAAAGTAGAATGTAAAT	GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCC
GTATTAATAGAACTAAAGTAGAATGTAAAT	ATATATGAGCAATGTGAAGTAATGCAATCCATATTCG
GTATTAATAGAACTAAAGTAGAATGTAAAT	GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGG
GTATTAATAGAACTAAAGTAGAATGTAAAT	TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTC
GTATTAATAGAACTAAAGTAGAATGTAAAT	TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTG
GTATTAATAGAACTAAAGTAGAATGTAAAT	TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATC
GTATTAATAGAACTACAATAGAATGTAAAT

>NC_018664|2|1|704764-706990|PILER-CR
ATTAATAGAACTAAAGTAGAATGTAAAT	ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTCGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCGGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTGGC
ATTAATAGAACTAAAGTAGAATGTAAAT	GGATAAACACTAGCCAAATGACTAGGAGAAAAAACAGC
ATTAATAGAACTAAAGTAGAATGTAAAT	TTCATTGCCATCTCTGATGAAGCTAATGTACTTATCGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ATCCATCATACAATTCATCAAATGTAAATTGATCCTTGC
ATTAATAGAACTAAAGTAGAATGTAAAT	GTTAGAATTGATGAATTATCAAGACAGGATCTTGACGGC
ATTAATAGAACTAAAGTAGAATGTAAAT	CCACATTAGAGGTTTAATTGATAAGGTGCATACTTTGC
ATTAATAGAACTAAAGTAGAATGTAAAT	CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAAGC
ATTAATAGAACTAAAGTAGAATGTAAAT	AAAATTTAAACACCCACTAAGTCTTTCATACTTACTGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ATGATAGAGATGAAATGTTGAATATCAAATCTTACTTGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAGGC
ATTAATAGAACTAAAGTAGAATGTAAAT	TCTATTGAATTTCTGAAAAGATTTATTCATTTTATCGC
ATTAATAGAACTAAAGTAGAATGTAAAT	TAAAAATAATAAGTAATTTATTTTATTTTCATATTAGC
ATTAATAGAACTAAAGTAGAATGTAAAT	CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATCGC
ATTAATAGAACTAAAGTAGAATGTAAAT	AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAGGC
ATTAATAGCACTAAAGTAGAATGTAAAT	AATCGAATAGGCATAATAAATAGCAATAGCAACAAGCGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTAGC
ATTAATAGAACTAAAGTAGAATGTAAAT	TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTAGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ATGCAACGAATGCTATAATCTTTCATTTCTGATATCGC
ATTAATAGAACTAAAGTAGAATGTAAAT	ATATAGTAAAACATCATTCTTCCTTGACAACTGATTGC
ATTAATAGAACTAAAGTAGAATGTAAAT	AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCATGC
ATTAATAGAACTAAAGTAGAATGTAAAT	TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGCGT
ATTAATAGAACTAAAGTAGAATGTAAAT	ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTCGT
ATTAATAGAACTAAAGTAGAATGTAAAT	AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTTGT
ATTAATAGAACTAAAGTAGAATGTAAAT	ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTAGT
ATTAATAGAACTAAAGTAGAATGTAAAT	TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCACGT
ATTAATAGAACTAAAGTAGAATGTAAAT	GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCCGT
ATTAATAGAACTAAAGTAGAATGTAAAT	ATATATGAGCAATGTGAAGTAATGCAATCCATATTCGGT
ATTAATAGAACTAAAGTAGAATGTAAAT	GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGGGT
ATTAATAGAACTAAAGTAGAATGTAAAT	TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTCGT
ATTAATAGAACTAAAGTAGAATGTAAAT	TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTGGT
ATTAATAGAACTAAAGTAGAATGTAAAT	TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATCGT
ATTAATAGAACTACAATAGAATGTAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_018664.1|WP_014966834.1|702797_703289_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_018664.1|WP_014966835.1|703298_704291_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_018664.1|WP_014966838.1|708391_709672_+|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl|CDD|200569
NC_018664.1|WP_041701464.1|694399_694582_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_041701475.1|718151_718331_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014966842.1|713178_714990_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_144275992.1|696452_697199_+|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl|CDD|273848
NC_018664.1|WP_014966841.1|712779_713073_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014966837.1|707140_707959_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380319
NC_018664.1|WP_041701467.1|698882_699767_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|274215
NC_018664.1|WP_041701469.1|704297_704576_+|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
NC_018664.1|WP_014966827.1|694981_695266_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_144276059.1|710623_712669_-|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|223288
NC_018664.1|WP_014966845.1|717267_717981_-|coenzyme-F420-0:L-glutamate-ligase	unknown	unknown	gnl|CDD|376711
NC_018664.1|WP_014966828.1|695458_696415_+|transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|379100
NC_018664.1|WP_041701472.1|715007_716726_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_018664.1|WP_014966839.1|709737_710574_+|DegV-family-protein	unknown	unknown	gnl|CDD|273257
NC_018664.1|WP_014966830.1|697210_698893_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl|CDD|187884
NC_018664.1|WP_014966832.1|699753_700515_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl|CDD|187789
NC_018664.1|WP_014966844.1|716814_717246_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_018664.1|WP_014966834.1|702797_703289_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	3.4e-54	178.1	6.9
NC_018664.1|WP_014966835.1|703298_704291_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	2.3e-129	425.9	10.7
NC_018664.1|WP_014966828.1|695458_696415_+|transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	1e-40	134.8	0.1
NC_018664.1|WP_144275992.1|696452_697199_+|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	2e-28	94.4	2.7
NC_018664.1|WP_014966830.1|697210_698893_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	6.1e-22	72.5	1.7
NC_018664.1|WP_041701467.1|698882_699767_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	8.4e-63	207.0	4.7
NC_018664.1|WP_041701469.1|704297_704576_+|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	1.6e-24	80.8	0.1
NC_018664.1|WP_014966832.1|699753_700515_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	4.1e-32	106.4	1.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_018664.1|WP_014966834.1|702797_703289_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.09888e-61
NC_018664.1|WP_014966835.1|703298_704291_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.78134e-154
NC_018664.1|WP_014966838.1|708391_709672_+|polysaccharide-deacetylase-family-protein	gnl|CDD|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	2.82743e-81
NC_018664.1|WP_144275992.1|696452_697199_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.7676e-23
NC_018664.1|WP_041701472.1|715007_716726_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_018664.1|WP_014966837.1|707140_707959_+|nitroreductase-family-protein	gnl|CDD|380319	cd02143, nitroreductase_FeS-like, nitroreductases with an N-terminal iron-sulfur cluster-binding domain. Members of this family utilize FMN as a cofactor. This family may be involved in the reduction of flavin or nitroaromatic compounds via an obligatory two-electron transfer. Nitroreductase is homodimer. Each subunit contains one FMN molecule.	9.6474e-66
NC_018664.1|WP_041701467.1|698882_699767_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	5.15313e-56
NC_018664.1|WP_041701469.1|704297_704576_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.816e-24
NC_018664.1|WP_144276059.1|710623_712669_-|UvrD-helicase-domain-containing-protein	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	7.02525e-125
NC_018664.1|WP_014966845.1|717267_717981_-|coenzyme-F420-0:L-glutamate-ligase	gnl|CDD|376711	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase. F420-0:Gamma-glutamyl ligase (EC:6.3.2.-) is an enzyme involved in F420 biosynthesis pathway. It catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0). This reaction produces polyglutamated F420 derivatives. GTP + F420-0 + n L-glutamate -> GDP + phosphate + F420-n.	7.08168e-08
NC_018664.1|WP_014966828.1|695458_696415_+|transcriptional-regulator	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.02523e-38
NC_018664.1|WP_014966839.1|709737_710574_+|DegV-family-protein	gnl|CDD|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.99062e-88
NC_018664.1|WP_014966830.1|697210_698893_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl|CDD|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	3.91331e-19
NC_018664.1|WP_014966832.1|699753_700515_+|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.38662e-22

Protein sequences

>NC_018664.1|WP_041701469.1|704297_704576_+|CRISPR-associated-endonuclease-Cas2
MYVVLMYDILTDEGGARVHRNTFKICKRYLTHIQKSVFEGNLTELNLMKLRKELSEHIRDNKDSLIIFKSRDEKWLTKEFIGLKDDKTSNFF
>NC_018664.1|WP_014966835.1|703298_704291_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGETFYIFRDGNLSRKDNNIVIRTPEGDKKNLKSEVTDEIYLFGEVSMNTKLLNFVSQQKITMHIFNYYGFYSGSFYPRESNISGHLLVKQVKKYEDKSERLKLAKEILKAGSYNIYRNLRYYNSRGIDLNNPMKEIQSLINKLDYGTSISGIMGLEGNIRKIYYSTWNDIVRQDISFEKRIKRPPDNMINSLISFVNSLIYTTVLSEIYKTQLNPTISYLHEPGTKRFSLCLDIAEIFKPLIGDRMIFSLLNKNQITDNDFERESNFLYIKDSGKKKILMEYDKRLSKTIAHRDLGRDVSYRYLMRLECYKLIKHIIGEKEYEGFKIWW
>NC_018664.1|WP_014966834.1|702797_703289_+|CRISPR-associated-protein-Cas4
MKKVTGVMIYYYFVCKRKLWYFINDITMEQNSDLVSMGKLIDETSYSREKKHIMIDEVINIDFLKNWKVLHEVKKSKKIEEASKWQLKYYIWVLREKGIDIEKGILDYPLLRKREDIIIEREDEEELRLVLEDIRKIKQQHLPPKGQKKAICKKCAYYELCYI
>NC_018664.1|WP_014966832.1|699753_700515_+|type-I-B-CRISPR-associated-protein-Cas5
MKETKKAVRLKLRQDMVNYKKPTSFQLKETYPLPPYSTVIGMVHSLCDYKDYEKMEISIQGKYHSKVNDLYTRYEFKNGMRFEESRHQLKVGDFGISRGVSTIELLVDVELLIHIIPEDQALVEEIGRAFLYPREYPSLGRREDLVVIKEAKVVDIFEEELGKSLRMRDDYSAYIPMHLFEEVKLKDKVQGIDTSGTIYKLNKNYELVDYGTKKSPKIFRKWDKKQVVYGSNISAIRKRIITLDMDKNIVFSV
>NC_018664.1|WP_041701467.1|698882_699767_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKTKLMPKGLSMSMIFEAESANYGEAVGNVASLKKMARDKGEQYTYISRQAIRYNIIEQLGEELATVKAEGSGDKKVIQFDSNSTIDKYPEIDFFGYLKTEKGTGGRKRSAKVRLSNAISLETFKGDLDFLTNKGLADRLNENMNIAQSEIHRSYYRYTMVIDLDQIGIDEEYSIEIDNSEKARRVNKLLDTVALLYRDIRGRREDLKPLFVVGGVYDIKNPVFENVLSVKDNRVLVNQIEGVLFDNIREDTHCGLIEGKFENDNEIKEKLSAISMPEFFYILKEKVKSYYEGN
>NC_018664.1|WP_014966830.1|697210_698893_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MGSTIKLSMNDWLFNAGLVGIYNILKESNFDVKISGQDIEFDYSYLENFEESYFYYFINKYEKSLSWYKIVSYEERIEYHEESNFENFNEKSLEDLNNYIKNVAKYYIKSASYKSTYGLFNNEIDILALEKELSTITLRKKESIEDKIVEVKDRFEKLKVIINFCKSEKGKKYLASKNVIYNIIKNSWNGISFLNPQTKEKDVYIDYKNYFVVPTKEYLDADKSKYKYDCFICDSKIKDLKDDLSFLNMIGFDVNRKSSHVWNFVNDIAICSLCKLIYSCVPAGITYVYDKGIYINDNSSMKNAIDINQKIKSEVLKTDDNTRTLTYKALVTSIQEQSNDKIKYELADIQLIRYEDSKYKFNILSKKSLKVMRDSRDNLDSLIKCGFKEINTYFNIYELVIDSLLNSQNLFTLIHRLFMQKLSSPKDSYFNTFHLISMLKINIRFLKGVGYMKDIDKDAIVREGNASGYYLRKKYDSKGSVDKLNGISYRLLNALKTNNVDSFMDTLLNCYLYAKISVPPIMVDSLKSEEEFKTIGYAFVAGLIEGKDEIKENGGKSDEN
>NC_018664.1|WP_144275992.1|696452_697199_+|CRISPR-associated-endoribonuclease-Cas6
MKGGDNLRFAVELLLENDRVPKDKNRIILSILKNNFNSYNKEYYESLYEKTNNNIKDFTFSLYMGQCQFLREEIVIPEKKIILNFSAHNYEDGIMFYNSFLSNIGRSYPIKDNAIKVSNISMRKEKTIYGNEVIFKTMSPLVAREHRGDNKKTWYHSLRAEEGQVILKENISYQLNNVFGERAKLDIEEIDIEVSQNIKEVKVKNYGIEILGNIGLLKINAKPYLLDYLYKAGIGSKRSSGFGMVDIV
>NC_018664.1|WP_014966828.1|695458_696415_+|transcriptional-regulator
MSRVSNALTMYFLIQGRKMISVEELARELEVSERMIKKYKVDLEMAGIYISSKLGRYGGYYLETKKGLEGIGLTEEELNALRMVKETIKSGNYHYSARFEAIVSKLLKKQDELEDISYYNKALIDSEETIIKEKSSWTDINLAINQKKKIIMKYKSLQPQKLEIKKRVVHPYGIIDYKGATYFYGYCEIREDIRFFKLSRIISYEILTETFSIKDDFNFDEVSKKLFGIFNDKTINLKLKVHYPMNEIIKEKEISETQKITEIDDKTMYFEAEMRGYTEIKSWIMSMGSNAEVIEPEELKEDILNEIENLFKIYGKTF
>NC_018664.1|WP_014966827.1|694981_695266_+|hypothetical-protein
MEKQLKESTIIFKLYEIKSHNKFKIIKDNDYNEDYRIKVNISYDKGRKIHRTNIHVNEMILKKDIYQDKEKSFKFIHSTIDLIMKFILLVVRIR
>NC_018664.1|WP_041701464.1|694399_694582_-|hypothetical-protein
MKMLVRDSNNQYLKIQDIEIVFTENKEEASSFADMSADDFATLKKHIEQAYDTTLETFFE
>NC_018664.1|WP_014966837.1|707140_707959_+|nitroreductase-family-protein
MIKIDDKKCIVCGQCVKDCFLRDIEIVDNKVQTNNVTCIKCGHCIAVCPTNAVSIDEYNMEEVKDYNKDEFSIDSDNLLNFIKFRRTVRQFKNKEVEKEKILKIIEAGRFTQTGSNMQNISYIVVREGLQELKSLAFKSLKKKGEELISNTTSSMAVKRFGKLWIDMYKEHEESPNKNDKLFFNAPAVIIVAANTKVDGALASSNMELMTNALGLGTLFSGFFVMAAQEDEKIMDFLGVEKDKQIVTCMIIGYPDVKYLRTVPRKEADISWI
>NC_018664.1|WP_014966838.1|708391_709672_+|polysaccharide-deacetylase-family-protein
MMLKNNKKLTYTLLAFLLVVLVIIVKGSMTTEGKRGSQKVSIYLNNELIKFKDDEPVNKEGTIYAPLNEFAEKIDAKVKYDLLDNKVLITKKDKHILIKTKENLAITEENKSFFIETIGKSKSTLVPVALVSKHFDYKVSEESKKSTVRINEKSTKVNDDQEKKESSDKGKAVNTIANNKQTPNTENNKENKQSQKNEPKDNNSNVAENKETQENKDPNNDEKKDGKVAYLTFDDGPNINTPQILDVLKEKNVKATFFMLGSSIGAHGDIAKRVSEEGHALGLHSVTHNYKSVYASPDSFLQEMNTANNMLHEATGKNTLLIRAPYGSKPYMKQEFRDLAISWGYRIWDWNVDSRDSIKKNTTPDEVYNNVANQLTNKNEVIILFHDREHTLKALPRVIDYLHSQGFEIKKLDTSMTPMNFWGDTR
>NC_018664.1|WP_014966839.1|709737_710574_+|DegV-family-protein
MNIKILGDSCCDLTDELRRKMNVKLIPLTIHVDDDSYIDDDTLDTKELLKKMKESTNSPKTACPSPQEYIKEYEGEESVFVVTLSSKLSGSYNSAVLAKNILLEEIKDKFIHVFDSKSASSGEALISMKIFELAKNGYDNNQIVEKVDQYISEMKTLFVLESLDNLIKAGRISTLKGKLASMLSIVPIMKATNDGEIDLFEKVRGSKKAFKRLLDAIGEQGEKLEEKILGITHCNCLEKALEFKEEVMKKYNFKDIIIFETKGISTVYADDGGLIISF
>NC_018664.1|WP_144276059.1|710623_712669_-|UvrD-helicase-domain-containing-protein
MVLNDQQKSAVLHKEGPAIILAVPGAGKTTVLISRTANLILNHHIHPNNILSITFSKASAKDMKERFISIFGQEVGSIASFSTIHSFAYFLIRDFAKDKKLKLNLIEGIDSGINKIQIIKNIYSEVNNSFINEDKLEELLNIIGFVKNMMIKVEDFCEHRNFNIKGFDKIFSNYESYKRKHNLIDFDDMLTMTLDILQNNPSVLNKYRDRYRYIQVDEGQDTSKVQNEIIKLISSPHNNLFVVADDDQSIYGFRGAYPEDLLVFDKKYPKAKVFFMEENYRSTKNIVSVCNSFIKQNKSRYDKSLFTNNQSIEPVTITKLKNQEDQYDYIIDSIKEDMDLSNIAILFRNNLSAISVIDHLNRNNLNFYMKDSKVHFFKHWVVLDILRFFNLAVDDSDISSFEKIYYKMNGYISKLALNYIKTQDSLTSVFDRLLTFDNFKPFQLENIKAIKSNFKKLLKMKPFGAIMFIENDLGYRKYLEDNCKNFGYSFENVNSILGHLKSVSIGVNSIGELLDKLDSLKKSIDNAKYNKNSEAITLSTIHSAKGLEFRKVYMIDLIDGEFPNINSLELSEIGDLKPLEEERRLFYVGMTRAKTHLNLITFNYRNEERVFYSKFMRELEELMGVTRSDDHGIKVGSIVDHKKFGSGVVKDIDGDAILIHFDDGGLKQLSLNLCIEKNLFK
>NC_018664.1|WP_014966841.1|712779_713073_+|hypothetical-protein
MKFLILQMQDIYFIIRYNGIRKCNMGWLYLLYMGTLLIIIGSYSILEDFYDFKSILKERVLVKKENVNIDGYLKVKAMIGIFSIVVGILSIINYIYY
>NC_018664.1|WP_014966842.1|713178_714990_+|hypothetical-protein
MVVLDELDFEKSEKIINDKLSMGLLSCKTGDSHKSSSEESLFMTIATGRRVSIPNNTFKTIKKVKEKGVIEDYDEIKRSLDAKYSSFSKHIDFLGDTLKKNKKKTSYIGNSSESLIISDKNGEIDYWEKEVNYNIDWLKTNTEKMLNRSDVLLVSFNVNNSEERIRLLEEYLKSISRHNVMVFPKTVSGDMDYRLNSTIVPILYSENNNNVGILTSKSTKRLGVITNLDIFPTIISYYDINMSSSIGNEIEVVEKSNLLEKNKEIFKEFLNLNIIKYVFHGLLTVIQVYIVYSYLHKNKDRNKLKFLVAIIPMSILISLVLGLFHLHTSIVLYLTIVLGLSILLIPYLYSKNIRVVETLSVLTNVIILLGVFLKPSMLYNSFIGYNSIIAGGRFYGFNNEIMGVLMITSAITYFFVRDILKNSIISNIFLISYIPIVIISLSGRFGANFGGYLTSIALFLVLIYLSILNKKANKKSLLTLIAIGIGILCVNLYFDIRNDAGSHAGKLLERVRLLGYYEFIDMIIKKLKQLIYMTIVPPWCIIFISQIYFMIKKFRQIERSKLTKGLTMFIISIVALIVNDTGVVAFVYMNAYLIGLMIESDYS
>NC_018664.1|WP_041701472.1|715007_716726_+|ABC-transporter-ATP-binding-protein
MIKKFISYYKPHSKLFILDMFCALMIAVIDLIFPMFTRKVVNEIIPQGQLRTLYILGGVMLVLIIVRTICNYVVDRWGHIVGVRMEYDMRNDLFSHMQKLSFSYFDNNKTGNIMSRIVNDLRDITELAHHGPEDLFISLIMMVGSFFILLSINVKLTLLIFAFIPIIVWISVVQRKNMTKAFRGQKREIAGVNSRLENSISGIRVTKSFTNEDFEMEKFLEGNTKFKETREEAFVYIGIFSTGIQFFSKFLNLLAIVAGGWFYYNGSINIGDLLAYILYVTYFLQPIVKLSQFIQQYQDGMSGFERFIEIMEIEPEIEEKFGAIELKDVDGKIEFKDVSFNYNDSVENVISNINYTVESGKTVALVGPSGGGKTTLCHLIPRFYEVSSGKILVDNTDIKDLTLQSLRKNVGLVQQDVFLFTGTIKENILYGDINATDEEVIEAAKKANIHDFIMSLPKGYNTDVGEKGVKLSGGQKQRISIARVFLKNPPILILDEATSALDNENEIIIQESLEKLSEGRTTIVIAHRLSTIRNASEIIVLTNEGIVEQGNHDELINKNGIYSKLYNSQFRV
>NC_018664.1|WP_014966844.1|716814_717246_+|hypothetical-protein
MKNVYDHIPYPELYYIIYPKVVQCMEEYFGGYEITHDISQGEIESLIDSVYAKVISECPEIAEDEVEMESYDVNSSIRPRPFFGRRRLLRDIAAIIFFGELFRRMGRHHGRRHHRLGHHSNYDYSDYDYQAYVYDFYNQGYMY
>NC_018664.1|WP_014966845.1|717267_717981_-|coenzyme-F420-0:L-glutamate-ligase
MSNVQDMSANEGKKLEIIFDGRTFYRIPIKTHLITENDNISDIAYEYTKDIVEKSDILFISKKVVAITQNRIFLAREIKVSPLAEFLSKFITISSLGMGLGRPETMEIAIRECGTIRMLFAAIIAGFTKKILRRSGDFYKLIGSKARYIDGSYDGNIPPYDEYIILAPENCNEICREASKRLGNICVAIVGVNDVGANTLGVSHDDMNPKEISKVLSDNPLGEEHQKTPLGIIRELK
>NC_018664.1|WP_041701475.1|718151_718331_-|hypothetical-protein
MKGMLSSSLDDNFMKNVDNLKLKDAKDRMGLLNSSNLYSSQSDGIIVSENTTEDSYNIK

Crispr_ID: NC_018664_3

• CRISPR_ID: NC_018664_3
• CRISPR_location: 1574076-1574229
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_018664_3

Consensus_repeat	Method
CATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGT	CRISPRCasFinder

spacers of NC_018664_3

>3.1|1574113|80|NC_018664|CRISPRCasFinder
GACATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGTCACAGTTGAAATCACGCTCATGTTTTTTCTTTCTACAATGG

CRISPR arrays and Neighbor proteins around NC_018664_3

CRISPR arrays

The CRISPR arrays of NC_018664_3

>merge|NC_018664|3|1574076-1574229|CRISPRCasFinder
CAGTCGAAATCACGCTCATGTTTTTTTCTTCTACAACGACATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGTCACAGTTGAAATCACGCTCATGTTTTTTCTTTCTACAATGGCATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGT

>NC_018664|3|3|1574076-1574229|CRISPRCasFinder
CAGTCGAAATCACGCTCATGTTTTTTTCTTCTACAAC	GACATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGTCACAGTTGAAATCACGCTCATGTTTTTTCTTTCTACAATGG
CATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_018664.1|WP_014966251.1|1572329_1573187_-|IS3-family-transposase	unknown	unknown	gnl|CDD|222853
NC_018664.1|WP_014967645.1|1579392_1579617_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967640.1|1576254_1576734_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967637.1|1574550_1575120_+|hypothetical-protein	unknown	unknown	gnl|CDD|293389
NC_018664.1|WP_041701654.1|1576008_1576203_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967638.1|1575309_1575453_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967631.1|1569369_1569861_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967633.1|1570586_1570895_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967634.1|1571914_1572070_+|transition-state-regulatory-protein-AbrB	unknown	unknown	gnl|CDD|131898
NC_018664.1|WP_144276082.1|1582005_1583124_+|baseplate-J/gp47-family-protein	unknown	unknown	gnl|CDD|377414
NC_018664.1|WP_014967625.1|1564826_1565081_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967642.1|1577696_1577876_+|phage-terminase-small-subunit	unknown	unknown	unknown
NC_018664.1|WP_144276009.1|1566047_1566230_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967627.1|1566682_1566949_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014966252.1|1573183_1573498_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967630.1|1568655_1569108_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NC_018664.1|WP_014967646.1|1579925_1580114_+|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014967650.1|1583136_1583700_+|DUF2313-domain-containing-protein	unknown	unknown	gnl|CDD|378379
NC_018664.1|WP_014967641.1|1577111_1577552_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|226489
NC_018664.1|WP_014967629.1|1568035_1568512_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_018664.1|WP_014967634.1|1571914_1572070_+|transition-state-regulatory-protein-AbrB	gnl|CDD|131898	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See pfam04014). [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	6.46336e-13
NC_018664.1|WP_014967650.1|1583136_1583700_+|DUF2313-domain-containing-protein	gnl|CDD|378379	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313). Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins.	6.61235e-09
NC_018664.1|WP_014966251.1|1572329_1573187_-|IS3-family-transposase	gnl|CDD|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.70997e-52
NC_018664.1|WP_014967630.1|1568655_1569108_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.4626e-11
NC_018664.1|WP_014967637.1|1574550_1575120_+|hypothetical-protein	gnl|CDD|293389	pfam16784, HNHc_6, Putative HNHc nuclease. This family is found in Gammaproteobacteria. It may be an HNH-like nucleases. The shorter matches are likely to be from phage proteins whereas the longer members are probably from the bacterial genomes.	3.74113e-27
NC_018664.1|WP_014967641.1|1577111_1577552_+|GNAT-family-N-acetyltransferase	gnl|CDD|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	1.74112e-12
NC_018664.1|WP_014967629.1|1568035_1568512_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.92904e-15
NC_018664.1|WP_144276082.1|1582005_1583124_+|baseplate-J/gp47-family-protein	gnl|CDD|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	4.0731e-32

Protein sequences

>NC_018664.1|WP_014966252.1|1573183_1573498_-|hypothetical-protein
MSGKKGMKHFGKTIINEVKQMVKDGKTHREIAEYFGLKDGLVINELLKRERRRERRIAEGIIPKPKGRPRKCDLSSDQNKDAEIRKLKMEVELLRSFLQIAGRK
>NC_018664.1|WP_014966251.1|1572329_1573187_-|IS3-family-transposase
MRPSVKYLAIYRHKNKYSISLMCKFFNVSRSGYYDFVKRMDKPSKNEHLIELIRQCQEKTRRTYGYRRVKIWLERNYNIIINAKTVLKVMNHNNLLSQIRRRKKYKQMGKQLHKYENILNRDFKASKPNQKWVTDISYIHTTEGILYLSMIKDLYDNSIVAYKTGTEQTVNLVLNTIKHAKRKEKVTTELQLHSDQGLQYTSKGYFNLLKEYGITPSMSRRGNCYDNACAENFFGILKSECIYRAKPKSIYEARQLIDDYIYFYNYERIQLKTKLTPHEKRCQFV
>NC_018664.1|WP_014967634.1|1571914_1572070_+|transition-state-regulatory-protein-AbrB
MKSTGIVRKVDELGRVVILKELRNTLELPEGASFETYVDGEQIILKKYALS
>NC_018664.1|WP_014967633.1|1570586_1570895_+|hypothetical-protein
MSKKKTIIISSFICVLPIMLGSILWSLLPEMLIRHFGPGSYSVSPKKTVIFLYPLLFLMLHFVVVFKSDWLNTTRNEKRYWYIPVLSSTFFIISFILSFMKS
>NC_018664.1|WP_014967631.1|1569369_1569861_-|hypothetical-protein
MLKNAGYILFDKIKYRQVVKKDTQAHNLKSEKENVEKALRRLEDLYIFPDDIMSEKDYLIKRQELKKRISYLEDEISKRYAEHSKTIPKHDLSFLNKASQYLLTHNLVSENTIKYNELVKVIDKKMLRSFMQRVIKKITIEENKHIFSIEFANDMIHRFVYRI
>NC_018664.1|WP_014967630.1|1568655_1569108_+|MarR-family-transcriptional-regulator
MDKEIIYDIRQFNRFYTKVLGLFNNQLLDTDYSLTEARILFEISERTECIANNLVQELNIDRSYMSRILRKLEREELIEKKSSKIDSRKNFLFLTRKGEELLSKIHIKSDEQINQLFNGLNDSEVNEIRISMMIIKEKLDKNIKQKLKKE
>NC_018664.1|WP_014967629.1|1568035_1568512_-|GNAT-family-N-acetyltransferase
MIIREIKKEDNVKIREIIQGSLKSLGLAIPGTAYFDPQLNNLHQYYTNLKHANYWVVEMEGEVVGGIGIAPFNKHDKVCELQKLYLSPKTQGLGFGKKLMETALAFASKHYAKCYLETHYELKTACILYEKFGFKLLHEPLSCSGHSAMNAWYIKDLN
>NC_018664.1|WP_014967627.1|1566682_1566949_+|hypothetical-protein
MKENHQHISNIYLAYNLNKVNKKIKTLKHGMLARGDRAIDDAVKNISALNDEWKDKSVTEKIRYLGKADSNLGLAMELMSGDDSFFFL
>NC_018664.1|WP_144276009.1|1566047_1566230_-|hypothetical-protein
MVITKNKSPCHNHCNRNDRRERECDFECNERRRERERDFECHDRRREDERDFECRCRRCR
>NC_018664.1|WP_014967625.1|1564826_1565081_+|hypothetical-protein
MEKNHKKSIIFISIFVIGLIILMKSINLGEKEVSNIVSISGGSVDTAIYLIYLEKSIEKYRLIGSILSVLGGLGIIINKSVKSI
>NC_018664.1|WP_014967637.1|1574550_1575120_+|hypothetical-protein
MNYLSEIKAIKEVEEGTYLKIFVPKEKLRYTIDRFKEDGKVFAEIRLDDNRRIRNDQKKKCFATLKDIADYTGNLQEDMHDYFKMIYRYVYENKRISMSDCTVTQARDTINILIDFALNHDISLTDLGVNRTDDINRYLYGCLINRRCCICGKKADIHHDEVIGMGRNRRKINHVGMKVIALCREQRGT
>NC_018664.1|WP_014967638.1|1575309_1575453_+|hypothetical-protein
MDTTIKAIDYSKDIVQGGDVVSGIERELERNIDMLIRELERAIKYRC
>NC_018664.1|WP_041701654.1|1576008_1576203_+|hypothetical-protein
MKDKIIITVFSVVIFIGIIKIYVFMTMPLPFGGVLDVLHGFVVLFIFIPASVYLSTKLIDLIRK
>NC_018664.1|WP_014967640.1|1576254_1576734_+|hypothetical-protein
MSWKKIFVSEIGEQSIFKFISSEIHKERYNSYSEIKEVLNEVYKEKSEGELKEFHDTYKYRKTALESTNTESFSTLCISAIAIVFSIIAFVFSNARSFYPDNGRIIANILIIILIVIGFYGISAFLNIRYKAKKLVYYSIVLDVIESELEQKEEALQAE
>NC_018664.1|WP_014967641.1|1577111_1577552_+|GNAT-family-N-acetyltransferase
MFEFKEFDYLTDGEIDLKIEEKIPYNEEKDYVPTYKYRITIHDSDDRIGEINIRIVYNEGIYFCGNIGYMIEKMYRGNSYAVKACKIIKDVAIAHEMKKLIITCNLDNFPSRKTCEKIGLKLKDMIDLPMYKEGERQKCIYEWILE
>NC_018664.1|WP_014967642.1|1577696_1577876_+|phage-terminase-small-subunit
MSINWNKIKKEYIESKGKVVLKELAENHGVKIGTIRSRKSREEWNEEIDNSVATCNAER
>NC_018664.1|WP_014967645.1|1579392_1579617_-|hypothetical-protein
MLRCSIDFLPAKESPQNFHLALEEYIKETDDEAVDFYIHCPDNLVMDNKIFEHIQGLISEVIKQSRNRGVDKKY
>NC_018664.1|WP_014967646.1|1579925_1580114_+|hypothetical-protein
MYNKLNKITESDDMYVFSDEYSVNLKFEEGKWLIVPDENFANATSVNLVQRLKDTQEEMTEE
>NC_018664.1|WP_144276082.1|1582005_1583124_+|baseplate-J/gp47-family-protein
MNFPSKEELTQVLVSNLVGSDKKIDDLRNQWFIKHLIIALRETIYMLVVMLKFVYDNLTAISATGEKLEEIGIEEGVYRKEPTKTIHSVTLQKSSPVTNDYPIADNFLLTTTPIGSTPPIQFRVKPGQGKRILAGQSNVTDVLVECTEYGSIGNVPSGAINLIAQAGLDEVLDSRVVYYGLDIEDIEVYRKRVLDKKKKLSGGGTSKDYKMWAESVEGVLSATVYPRLRGNGTVDILINDIDGMPTAELISKTESEIATKTPADLADGAILVTGGTPLPIDITLSNCIWANGYDLLSGKPIIEDALRKYINRQANQERVVKFIDIIAIAKSTYLESDIDRKPILSDFTIITPTSNITLEDMQTAVVGQILIT
>NC_018664.1|WP_014967650.1|1583136_1583700_+|DUF2313-domain-containing-protein
MAFKDFLLSFFPHRSIDPDHPNNIRFFGKLSNVFNYIEKLVIQVKKESDISTATYSISAREEEAGIVSDTSLSIELRRANILAHKRKSDGSITKEELINALRAFGIEVSITNVSTQHLMKLNILKPYGVPDNLEHIQAFVEEVCRAHVGKEWTFNSISWNEFDSYDMTWDEFESLNLTWNEFEIYER

Crispr_ID: NC_018664_4

• CRISPR_ID: NC_018664_4
• CRISPR_location: 2342574-2342866
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NC_018664_4

Consensus_repeat	Method
ATTTACATTCTACTCTAGTTCTATTAATAC	CRISPRCasFinder

spacers of NC_018664_4

>4.1|2342604|35|NC_018664|CRISPRCasFinder
AAAGAAATGGAGATAAGAACACCTTTCACAGCCGA
>4.2|2342669|36|NC_018664|CRISPRCasFinder
TGGTACAATGACTATAAATTAATAAGTTTTTAAAAA
>4.3|2342735|36|NC_018664|CRISPRCasFinder
ACAAAGTATTATAGTAAATACAGGACTACTTACAGT
>4.4|2342801|35|NC_018664|CRISPRCasFinder
TTATGTGTTAAAAACTTTATTCCAGTATCATCAAC

CRISPR arrays and Neighbor proteins around NC_018664_4

CRISPR arrays

The CRISPR arrays of NC_018664_4

>merge|NC_018664|4|2342574-2342866|CRISPRCasFinder
TATTATATTCTAATATAGTTCTATTAATACAAAGAAATGGAGATAAGAACACCTTTCACAGCCGAATTTACATTCTATTGTAGTTCTATTAATGCTGGTACAATGACTATAAATTAATAAGTTTTTAAAAACTTTACATTCTAATGTAGTTCTATTAATACACAAAGTATTATAGTAAATACAGGACTACTTACAGTCTTTACACTCTATTTTAGTTCTATTAATACTTATGTGTTAAAAACTTTATTCCAGTATCATCAACATTTACATTCTATTCTAGTTCCATTAATACT

>NC_018664|4|4|2342574-2342866|CRISPRCasFinder
TATTATATTCTAATATAGTTCTATTAATAC	AAAGAAATGGAGATAAGAACACCTTTCACAGCCGA
ATTTACATTCTATTGTAGTTCTATTAATGC	TGGTACAATGACTATAAATTAATAAGTTTTTAAAAA
CTTTACATTCTAATGTAGTTCTATTAATAC	ACAAAGTATTATAGTAAATACAGGACTACTTACAGT
CTTTACACTCTATTTTAGTTCTATTAATAC	TTATGTGTTAAAAACTTTATTCCAGTATCATCAAC
ATTTACATTCTATTCTAGTTCCATTAATACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_018664.1|WP_014968356.1|2346105_2346348_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|377199
NC_018664.1|WP_014968364.1|2353083_2353770_-|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NC_018664.1|WP_014968360.1|2349230_2349455_+|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl|CDD|365990
NC_018664.1|WP_014968347.1|2337662_2338160_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379352
NC_018664.1|WP_014968352.1|2340325_2340745_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968350.1|2339438_2339705_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968354.1|2343934_2345485_+|recombinase-family-protein	unknown	unknown	gnl|CDD|377856
NC_018664.1|WP_014968359.1|2348582_2349005_-|DNA-binding-protein	unknown	unknown	gnl|CDD|179669
NC_018664.1|WP_014968351.1|2339984_2340155_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968355.1|2345529_2345892_+|manganese-catalase-family-protein	unknown	unknown	gnl|CDD|226076
NC_018664.1|WP_144276026.1|2337391_2337643_-|DnaD-domain-protein	unknown	unknown	unknown
NC_018664.1|WP_041701797.1|2340847_2341030_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968358.1|2347132_2348521_+|ferrous-iron-transporter-B	unknown	unknown	gnl|CDD|223447
NC_018664.1|WP_014968362.1|2351631_2352138_-|ferritin	unknown	unknown	gnl|CDD|153113
NC_018664.1|WP_014968344.1|2336091_2336586_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968361.1|2349507_2351538_-|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_018664.1|WP_014968353.1|2341184_2341652_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NC_018664.1|WP_014968357.1|2346369_2347140_+|50S-ribosome-binding-GTPase	unknown	unknown	gnl|CDD|376781
NC_018664.1|WP_014968349.1|2338988_2339192_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968345.1|2336685_2337084_-|Holliday-junction-resolvase-RecU	unknown	unknown	gnl|CDD|377142

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_018664.1|WP_014968356.1|2346105_2346348_+|ferrous-iron-transport-protein-A	gnl|CDD|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	5.08416e-18
NC_018664.1|WP_014968364.1|2353083_2353770_-|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.343e-52
NC_018664.1|WP_014968360.1|2349230_2349455_+|alpha/beta-type-small-acid-soluble-spore-protein	gnl|CDD|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	9.95559e-25
NC_018664.1|WP_014968347.1|2337662_2338160_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379352	pfam13730, HTH_36, Helix-turn-helix domain.	3.98077e-07
NC_018664.1|WP_014968353.1|2341184_2341652_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.21514e-07
NC_018664.1|WP_014968354.1|2343934_2345485_+|recombinase-family-protein	gnl|CDD|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	1.30261e-22
NC_018664.1|WP_014968359.1|2348582_2349005_-|DNA-binding-protein	gnl|CDD|179669	PRK03902, PRK03902, transcriptional regulator MntR.	9.45636e-27
NC_018664.1|WP_014968358.1|2347132_2348521_+|ferrous-iron-transporter-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.87246e-71
NC_018664.1|WP_014968362.1|2351631_2352138_-|ferritin	gnl|CDD|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	1.00615e-77
NC_018664.1|WP_014968345.1|2336685_2337084_-|Holliday-junction-resolvase-RecU	gnl|CDD|377142	pfam03838, RecU, Recombination protein U.	1.03463e-29
NC_018664.1|WP_014968355.1|2345529_2345892_+|manganese-catalase-family-protein	gnl|CDD|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	1.73211e-40
NC_018664.1|WP_014968357.1|2346369_2347140_+|50S-ribosome-binding-GTPase	gnl|CDD|376781	pfam02421, FeoB_N, Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N-terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.	3.18092e-87
NC_018664.1|WP_014968361.1|2349507_2351538_-|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.69502e-49

Protein sequences

>NC_018664.1|WP_014968353.1|2341184_2341652_+|helix-turn-helix-transcriptional-regulator
MKERLLMLRKDLKLNQHDFGSRIEMSKASISALEKGLRDITDRTVKLICTEFSINEDWLRYGKGEMFIQADTFSLDDYAKQNNLSDLELDIVKAYINLNSDIRKDIITSLKAVFDNHSEIAVIKDEESDINKELEAYRLELEAEQRGRRKNENLT
>NC_018664.1|WP_041701797.1|2340847_2341030_-|hypothetical-protein
MDILIKNEEKPVLDEIVRIIKQSSIQKQQLILTHLEGFNQGYVYRKMEEIKQRDREKESA
>NC_018664.1|WP_014968352.1|2340325_2340745_-|hypothetical-protein
MKNIDLITMMSSIICSIAVVKIYIISEINKFIKKEEKIYKEFLKEVEEMNKKIESTINTNLQLVEEVRDISKEKLDWLKSIDAIDISNYNYMIMSNEHVYSKEYLEYKSLEEIKTEYESLYSNISPNNIFKYLANERNG
>NC_018664.1|WP_014968351.1|2339984_2340155_-|hypothetical-protein
MKKYDATYKLGNTTVHIVAPPPLTEDDWNKIKKGLNRLGLEIWREDSGEDEEGEEV
>NC_018664.1|WP_014968350.1|2339438_2339705_-|hypothetical-protein
MNDLDYVDEQILGLRMCNRDMLGKVYCQLVSMEIIEDIINTHKPLGLFWTKDTKANLYIAVNNNIGKAYKKEFKSLEECINWLMKKEV
>NC_018664.1|WP_014968349.1|2338988_2339192_-|hypothetical-protein
MKKIIKEWKYRLKNIDENLEIHIRATENKEYTKDMRDYARSRVISLTEYKNLIESTIEALEKVKQEV
>NC_018664.1|WP_014968347.1|2337662_2338160_-|helix-turn-helix-domain-containing-protein
MKKVIYMADYLKGEIGDIRKKGFGMIPKVVMLDERVSIEAKAIYAYMAGYAGAGDTAFPGVEKMIKDLGIDANRFYKHRKILVSLGYITITRTRKEVKRDNNVYTLNQMVIENQPLQNADIENEDVEIQRIENEYANNNSFLKATVLKNNNYKKRKRKAVVIVVV
>NC_018664.1|WP_144276026.1|2337391_2337643_-|DnaD-domain-protein
MDLDTDKEFGELVKLYQECIGQPNGLTVNWISQMLEKYGFEWCKNTMLIAEEQGKRSKSYVKGILENWKNKVGMQLEKKDNLI
>NC_018664.1|WP_014968345.1|2336685_2337084_-|Holliday-junction-resolvase-RecU
MKYVNKCKLFEEEVIRSNESYEYKKIALIQKINTPWKVIRNGKKIVSAFPEGKSTLDFRGTVKGGVSISFDCKESEDDRGLPLSYIQPHQIEYIRKALDMDEASFILFYIKAYNKRFFIGGQIVISYWDRWQ
>NC_018664.1|WP_014968344.1|2336091_2336586_-|hypothetical-protein
MNMQKQILVVNKETEEKLEEITFNCGYNIAFTNLTDDGSIRHVRSLDNGKFGEKHWIISYIYKPIAEKLVKKYQELRHIRPTRILFIEEMDWIPPDSIKPKKHWVAKASKANKHLSSMIGYDYVMETRSYFIERISRSQIIELLCHELRQIDEYGDIASHDVED
>NC_018664.1|WP_014968354.1|2343934_2345485_+|recombinase-family-protein
MQYCIYLRKSRSDEEAEQRGEGETLARHEKILLDLARKLKLNITKIYKEVVSGETISSRPIMQQLLSEVEEKLWSGVLVVEVERLARGDTIDQGTVSQAFKYSNTKIITPVKTYDPNNEFDEEYFEFGLFMSRREYKTINRRLQRGRLESVKEGKYVGNTPPYGYVRKKLEKEKGYTLEPHPEQSDIVKLIYKLYTEENIGVSLIVRRLEELKIPTAKGGYWSTSTLRGILNNPVYIGKIRWKHRPQVKKVKDGEIIKERPRSNDVVIVDGLHEAIIDEETFNKAQEILSENSSVPVPTKYTIKNSLAGIVKCGKCGRNMNRRPYGERQPATLMCPVPQCSNVSSQLHLVEQKLLESLEKWLDKYKLKINSNTDNNNLSLELDVVKKSIQTINEELETLNTQSDKLHDLLEQGIYSTEKFLERSKIISEKISKLKDNKSNLEKELNQNRLKEESDRTIIPKIERILKTYNTLETPDQKNELLKEVLTEVEYNKEVGGRWHAKPDDFKLVVHPKIPK
>NC_018664.1|WP_014968355.1|2345529_2345892_+|manganese-catalase-family-protein
MIGTIVWKLIKDAPISKIKGTPFEAYYVSHGKALYPANAGGHPWTASFIQSKDDPIASLHEDMAAEQKARATYEYLIRVSDDPGVKDTLRFLREREVVHFQRFGEALCIVQEALDSKKYH
>NC_018664.1|WP_014968356.1|2346105_2346348_+|ferrous-iron-transport-protein-A
MKDSKAQSLNTLPIGSVVKIDSILTTGEHRRRILDLGLIPGSIVTIERSSPSGNPIAYRIRGSLIALRNEEAQSIKVNIL
>NC_018664.1|WP_014968357.1|2346369_2347140_+|50S-ribosome-binding-GTPase
MGLTSQSSGFSLLKEKFSIEKKSKDEIIIALAGNPNTGKSTLFNSLTGLRQHTGNWPGKTVTNAKGSFKYKDKDFLLIDLPGTYSILANSAEEEVARDFICFGHPDLTVVITDSTCLERNLNLALQVMEITDNVIVCLNLMDEAKRKGISIDIKKLEQLLGVPVIPIIARDGKGIDDLLEVIYKVVQKEIVPSPYKIKYSEHIENYVSKVQKRLSDSLYDKLNKRWISLRLLDGDKEILNNIDSILTSRMSGDIDE
>NC_018664.1|WP_014968358.1|2347132_2348521_+|ferrous-iron-transporter-B
MSSVFKNNIDKLMCLVEEQESKSLGDDIVTTIYQNAERIASSVTTVKDNRKIKWDEKLDNILTSRLTGFPIMILLLAGVFWVTIVGSNYPSELLSNMFFKLEDKITLLFNYFNSPEWLHGILVLGMFRGLGWVVSVMLPPMAIFFPIFTLLEDFGYLPRIAFNLDNMFRKSGTHGKQALTMSMGFGCNAAGVIASRIIDSPRERLIAIITNNFVPCNGRFPILIAMSMIFIGTFSNKYSTVLASLSVVLLVLIGVYITLLVSKLLSKTVLKGVPSSFTLELPPYRKPQLGRILVRSLLDRTLFVLWRAVIVAAPAGAITWLIANTSIGDISLLNYIANILDPFGKLLGLDGFILMAFILGIPANEIVLPILIMSYMSKGSMLEFDTLDSLKNLLLNNGWTIITGINFMLFSLLHFPCATTLLTIKKETNSTKWTIFTLLITTLSAIVVTFLVSMLGKLFGIS
>NC_018664.1|WP_014968359.1|2348582_2349005_-|DNA-binding-protein
MLSPSLEDYLEELYRLKVNNKEIRVKDIAYCLDVSMPSVVNGLRRLGRLDYIIYEPYEKIEITEKGKKKGKFLVMRNKILKDFIDVIESDCDSEKEAEAMEHYLSISTIKCIEKMVAFLKNNTHILDKMINYEIESQLND
>NC_018664.1|WP_014968360.1|2349230_2349455_+|alpha/beta-type-small-acid-soluble-spore-protein
MSNNNRNSSNKIVVPEARQALNQMKTEIASELGLSNYSSIDKGTLTSRQNGYVGGYMTKSLVEMAQRNMSGSSK
>NC_018664.1|WP_014968361.1|2349507_2351538_-|methyl-accepting-chemotaxis-protein
MKNLYINKINNIKNKILIPTIALLLVSITLLGFIGYHTQKQSTYKVLEEMLTAQVNSFEQSIEENIKTSKKAKESINNTLVNIAKSIERQTRFIPEEDMNRSLSEICRELSIDRINIADETGVTKWSSDEDGLAYDFNSDEEARKYLSAITDKTFTTIDENITTAEGKEMHFIGVARQDRPGFIQIGIETSLLDGINTDVDISSIARLTSFGNGGYMIVLNSDGVILSHQDHNLIGKNIKEFDWGEKLLKQSSGKFEFEYLRKNNYISFKKYNSNTIIGATIPSEEYIKGINVFIRNVFITAIVTLILTSIFVNILNNRVIVKRLNKGLKYINEIEKGNLNANFDVVGNDEISLLMKGLHNMNISLRSILSEISEFVEKVGNMSNTLSDSSEQTTVAGQEIAASVAEIASGANEQVREVQEGILKLERLSDAMNEITQDSSTIEEKAIEIQSQNRRNVQAMSVLREKFIDNEKSTQNVTLKTNSLSEKSAQIENIIEVINGIAEQTNLLALNASIEAARAGEAGRGFSVVADEIRKLAEESMSASNKIEVIINSIGEDIRETKLSMQDVSKIVVEANHELHNTVNEFDLLRESNNAIVKLIGNLHEVINKSNKDKDEVMKAMDDVASVSQQTAASTEEISASTEEQASTFEGISYIAQELNQLSEGLVKIVERFNI
>NC_018664.1|WP_014968362.1|2351631_2352138_-|ferritin
MLSQKLLDALNDQFNYELLSAHYYIAMAAYCADQDLDGFANFFMVQAEEERFHAMKFYNYINEVDGRANLEGISTPKNDFESITDVFQNALSHENSVTKRIYNLMDIAQDEREHATISFLRWFVDEQIEEEASMKTIIKKLERLGNDNHGLFVLDQELGQRVFTPPTN
>NC_018664.1|WP_014968364.1|2353083_2353770_-|phosphatase-PAP2-family-protein
MKNKHKITREIPKKSLVKYLLGLFIAVLFFIVFMNFSTKVRGISEGIYFDKLILSRIHNHINQDIKNIMIFISFLGSAKFYLPLCSFLTIYLLRKKHYIESIGLINGVLGSAIVNFVLKRYYVRVRPEMYFQVQETGYSFPSGHSMVAISFYFICTYLLVRNRPWDIKKIIIWMSTIVFVTLIGFSRIYLGVHWPTDVIGGLSLGFVWLYFNIVLVELLHKKYKKPIR

Crispr_ID: NC_018664_5

• CRISPR_ID: NC_018664_5
• CRISPR_location: 2342944-2343634
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 10 spacers

Consensus repeat of NC_018664_5

Consensus_repeat	Method
ATTTACATTCTACTCTAGTTCTATTAATAC	CRISPRCasFinder
ATTTACATTCTACTCTAGTTCTATTAATAC	CRT
GTATTAATAGAACTAGAGTAGAATGTAAAT	PILER-CR

spacers of NC_018664_5

>5.1|2342974|38|NC_018664|CRISPRCasFinder,CRT
ACAGTATGTAACTAAAAAAATAACGATTACGCTACAAA
>5.2|2343042|31|NC_018664|CRISPRCasFinder,CRT,PILER-CR
AAGAGTACACTTCTTAGATCATTATTGACAC
>5.3|2343103|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR
TCTTGCGACTGGAAATCCACTTATCAAGGAGAAAA
>5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR
TATTGATACTACTTTTTCTTTTACCTTAAATGCTA
>5.5|2343233|37|NC_018664|CRISPRCasFinder,CRT,PILER-CR
AATATCGAATCTAAATCCATTTCTCACGTCTACATTG
>5.6|2343300|38|NC_018664|CRISPRCasFinder,CRT,PILER-CR
AATTACAGTTTGTACAAGTTTTGATATTTTTAATTATA
>5.7|2343368|37|NC_018664|CRISPRCasFinder,CRT,PILER-CR
ACGTCTAGACGTCTATGTTATATAATTATAAATAAGG
>5.8|2343435|38|NC_018664|CRISPRCasFinder,CRT,PILER-CR
AAGAAAAGAAATTTTACGAACACTTGATTCTTGTAAGG
>5.9|2343503|36|NC_018664|CRISPRCasFinder,CRT,PILER-CR
AGAGACTGGGGTTCTAATGCTAAGAAAAGAATGGAT
>5.10|2343569|36|NC_018664|CRISPRCasFinder,CRT,PILER-CR
AGTTGTTCAGCTTAGAGCTGAAGGTCTGTGGCTTTA

CRISPR arrays and Neighbor proteins around NC_018664_5

CRISPR arrays

The CRISPR arrays of NC_018664_5

>merge|NC_018664|5|2342944-2343634|CRISPRCasFinder,CRT,PILER-CR
ATTAAATTTCTAATATAGTTCTATTAATACACAGTATGTAACTAAAAAAATAACGATTACGCTACAAAATTTACATTCTACTCTAGTTCTATTAATACAAGAGTACACTTCTTAGATCATTATTGACACATTTACATTCTACTCTAGTTCTATTAATACTCTTGCGACTGGAAATCCACTTATCAAGGAGAAAAATTTACATTCTACTCTAGTTCTATTAATACTATTGATACTACTTTTTCTTTTACCTTAAATGCTAATTTACATTCTACTCTAGTTCTATTAATACAATATCGAATCTAAATCCATTTCTCACGTCTACATTGATTTACATTCTACTCTAGTTCTATTAATACAATTACAGTTTGTACAAGTTTTGATATTTTTAATTATAATTTACATTCTACTCTAGTTCTATTAATACACGTCTAGACGTCTATGTTATATAATTATAAATAAGGATTTACATTCTACTCTAGTTCTATTAATACAAGAAAAGAAATTTTACGAACACTTGATTCTTGTAAGGATTTACATTCTACTCTAGTTCTATTAATACAGAGACTGGGGTTCTAATGCTAAGAAAAGAATGGATATTTACATTCTACTCTAGTTCTATTAATACAGTTGTTCAGCTTAGAGCTGAAGGTCTGTGGCTTTAATTTACATTCTACTCTAGTTCTATTAATAC

>NC_018664|5|5|2342944-2343634|CRISPRCasFinder
ATTAAATTTCTAATATAGTTCTATTAATAC	ACAGTATGTAACTAAAAAAATAACGATTACGCTACAAA
ATTTACATTCTACTCTAGTTCTATTAATAC	AAGAGTACACTTCTTAGATCATTATTGACAC
ATTTACATTCTACTCTAGTTCTATTAATAC	TCTTGCGACTGGAAATCCACTTATCAAGGAGAAAA
ATTTACATTCTACTCTAGTTCTATTAATAC	TATTGATACTACTTTTTCTTTTACCTTAAATGCTA
ATTTACATTCTACTCTAGTTCTATTAATAC	AATATCGAATCTAAATCCATTTCTCACGTCTACATTG
ATTTACATTCTACTCTAGTTCTATTAATAC	AATTACAGTTTGTACAAGTTTTGATATTTTTAATTATA
ATTTACATTCTACTCTAGTTCTATTAATAC	ACGTCTAGACGTCTATGTTATATAATTATAAATAAGG
ATTTACATTCTACTCTAGTTCTATTAATAC	AAGAAAAGAAATTTTACGAACACTTGATTCTTGTAAGG
ATTTACATTCTACTCTAGTTCTATTAATAC	AGAGACTGGGGTTCTAATGCTAAGAAAAGAATGGAT
ATTTACATTCTACTCTAGTTCTATTAATAC	AGTTGTTCAGCTTAGAGCTGAAGGTCTGTGGCTTTA
ATTTACATTCTACTCTAGTTCTATTAATAC

>NC_018664|5|2|2342944-2343634|CRT
ATTAAATTTCTAATATAGTTCTATTAATAC	ACAGTATGTAACTAAAAAAATAACGATTACGCTACAAA
ATTTACATTCTACTCTAGTTCTATTAATAC	AAGAGTACACTTCTTAGATCATTATTGACAC
ATTTACATTCTACTCTAGTTCTATTAATAC	TCTTGCGACTGGAAATCCACTTATCAAGGAGAAAA
ATTTACATTCTACTCTAGTTCTATTAATAC	TATTGATACTACTTTTTCTTTTACCTTAAATGCTA
ATTTACATTCTACTCTAGTTCTATTAATAC	AATATCGAATCTAAATCCATTTCTCACGTCTACATTG
ATTTACATTCTACTCTAGTTCTATTAATAC	AATTACAGTTTGTACAAGTTTTGATATTTTTAATTATA
ATTTACATTCTACTCTAGTTCTATTAATAC	ACGTCTAGACGTCTATGTTATATAATTATAAATAAGG
ATTTACATTCTACTCTAGTTCTATTAATAC	AAGAAAAGAAATTTTACGAACACTTGATTCTTGTAAGG
ATTTACATTCTACTCTAGTTCTATTAATAC	AGAGACTGGGGTTCTAATGCTAAGAAAAGAATGGAT
ATTTACATTCTACTCTAGTTCTATTAATAC	AGTTGTTCAGCTTAGAGCTGAAGGTCTGTGGCTTTA
ATTTACATTCTACTCTAGTTCTATTAATAC

>NC_018664|5|2|2343012-2343634|PILER-CR
ATTTACATTCTACTCTAGTTCTATTAATAC	AAGAGTACACTTCTTAGATCATTATTGACAC
ATTTACATTCTACTCTAGTTCTATTAATAC	TCTTGCGACTGGAAATCCACTTATCAAGGAGAAAA
ATTTACATTCTACTCTAGTTCTATTAATAC	TATTGATACTACTTTTTCTTTTACCTTAAATGCTA
ATTTACATTCTACTCTAGTTCTATTAATAC	AATATCGAATCTAAATCCATTTCTCACGTCTACATTG
ATTTACATTCTACTCTAGTTCTATTAATAC	AATTACAGTTTGTACAAGTTTTGATATTTTTAATTATA
ATTTACATTCTACTCTAGTTCTATTAATAC	ACGTCTAGACGTCTATGTTATATAATTATAAATAAGG
ATTTACATTCTACTCTAGTTCTATTAATAC	AAGAAAAGAAATTTTACGAACACTTGATTCTTGTAAGG
ATTTACATTCTACTCTAGTTCTATTAATAC	AGAGACTGGGGTTCTAATGCTAAGAAAAGAATGGAT
ATTTACATTCTACTCTAGTTCTATTAATAC	AGTTGTTCAGCTTAGAGCTGAAGGTCTGTGGCTTTA
ATTTACATTCTACTCTAGTTCTATTAATAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_018664.1|WP_014968356.1|2346105_2346348_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|377199
NC_018664.1|WP_014968364.1|2353083_2353770_-|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NC_018664.1|WP_014968360.1|2349230_2349455_+|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl|CDD|365990
NC_018664.1|WP_014968347.1|2337662_2338160_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379352
NC_018664.1|WP_014968352.1|2340325_2340745_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968350.1|2339438_2339705_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968354.1|2343934_2345485_+|recombinase-family-protein	unknown	unknown	gnl|CDD|377856
NC_018664.1|WP_014968359.1|2348582_2349005_-|DNA-binding-protein	unknown	unknown	gnl|CDD|179669
NC_018664.1|WP_014968351.1|2339984_2340155_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968355.1|2345529_2345892_+|manganese-catalase-family-protein	unknown	unknown	gnl|CDD|226076
NC_018664.1|WP_144276026.1|2337391_2337643_-|DnaD-domain-protein	unknown	unknown	unknown
NC_018664.1|WP_041701797.1|2340847_2341030_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968358.1|2347132_2348521_+|ferrous-iron-transporter-B	unknown	unknown	gnl|CDD|223447
NC_018664.1|WP_014968362.1|2351631_2352138_-|ferritin	unknown	unknown	gnl|CDD|153113
NC_018664.1|WP_014968344.1|2336091_2336586_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968361.1|2349507_2351538_-|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_018664.1|WP_014968353.1|2341184_2341652_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NC_018664.1|WP_014968357.1|2346369_2347140_+|50S-ribosome-binding-GTPase	unknown	unknown	gnl|CDD|376781
NC_018664.1|WP_014968349.1|2338988_2339192_-|hypothetical-protein	unknown	unknown	unknown
NC_018664.1|WP_014968345.1|2336685_2337084_-|Holliday-junction-resolvase-RecU	unknown	unknown	gnl|CDD|377142

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_018664.1|WP_014968356.1|2346105_2346348_+|ferrous-iron-transport-protein-A	gnl|CDD|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	5.08416e-18
NC_018664.1|WP_014968364.1|2353083_2353770_-|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.343e-52
NC_018664.1|WP_014968360.1|2349230_2349455_+|alpha/beta-type-small-acid-soluble-spore-protein	gnl|CDD|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	9.95559e-25
NC_018664.1|WP_014968347.1|2337662_2338160_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379352	pfam13730, HTH_36, Helix-turn-helix domain.	3.98077e-07
NC_018664.1|WP_014968353.1|2341184_2341652_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.21514e-07
NC_018664.1|WP_014968354.1|2343934_2345485_+|recombinase-family-protein	gnl|CDD|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	1.30261e-22
NC_018664.1|WP_014968359.1|2348582_2349005_-|DNA-binding-protein	gnl|CDD|179669	PRK03902, PRK03902, transcriptional regulator MntR.	9.45636e-27
NC_018664.1|WP_014968358.1|2347132_2348521_+|ferrous-iron-transporter-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.87246e-71
NC_018664.1|WP_014968362.1|2351631_2352138_-|ferritin	gnl|CDD|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	1.00615e-77
NC_018664.1|WP_014968345.1|2336685_2337084_-|Holliday-junction-resolvase-RecU	gnl|CDD|377142	pfam03838, RecU, Recombination protein U.	1.03463e-29
NC_018664.1|WP_014968355.1|2345529_2345892_+|manganese-catalase-family-protein	gnl|CDD|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	1.73211e-40
NC_018664.1|WP_014968357.1|2346369_2347140_+|50S-ribosome-binding-GTPase	gnl|CDD|376781	pfam02421, FeoB_N, Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N-terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.	3.18092e-87
NC_018664.1|WP_014968361.1|2349507_2351538_-|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.69502e-49

Protein sequences

>NC_018664.1|WP_014968353.1|2341184_2341652_+|helix-turn-helix-transcriptional-regulator
MKERLLMLRKDLKLNQHDFGSRIEMSKASISALEKGLRDITDRTVKLICTEFSINEDWLRYGKGEMFIQADTFSLDDYAKQNNLSDLELDIVKAYINLNSDIRKDIITSLKAVFDNHSEIAVIKDEESDINKELEAYRLELEAEQRGRRKNENLT
>NC_018664.1|WP_041701797.1|2340847_2341030_-|hypothetical-protein
MDILIKNEEKPVLDEIVRIIKQSSIQKQQLILTHLEGFNQGYVYRKMEEIKQRDREKESA
>NC_018664.1|WP_014968352.1|2340325_2340745_-|hypothetical-protein
MKNIDLITMMSSIICSIAVVKIYIISEINKFIKKEEKIYKEFLKEVEEMNKKIESTINTNLQLVEEVRDISKEKLDWLKSIDAIDISNYNYMIMSNEHVYSKEYLEYKSLEEIKTEYESLYSNISPNNIFKYLANERNG
>NC_018664.1|WP_014968351.1|2339984_2340155_-|hypothetical-protein
MKKYDATYKLGNTTVHIVAPPPLTEDDWNKIKKGLNRLGLEIWREDSGEDEEGEEV
>NC_018664.1|WP_014968350.1|2339438_2339705_-|hypothetical-protein
MNDLDYVDEQILGLRMCNRDMLGKVYCQLVSMEIIEDIINTHKPLGLFWTKDTKANLYIAVNNNIGKAYKKEFKSLEECINWLMKKEV
>NC_018664.1|WP_014968349.1|2338988_2339192_-|hypothetical-protein
MKKIIKEWKYRLKNIDENLEIHIRATENKEYTKDMRDYARSRVISLTEYKNLIESTIEALEKVKQEV
>NC_018664.1|WP_014968347.1|2337662_2338160_-|helix-turn-helix-domain-containing-protein
MKKVIYMADYLKGEIGDIRKKGFGMIPKVVMLDERVSIEAKAIYAYMAGYAGAGDTAFPGVEKMIKDLGIDANRFYKHRKILVSLGYITITRTRKEVKRDNNVYTLNQMVIENQPLQNADIENEDVEIQRIENEYANNNSFLKATVLKNNNYKKRKRKAVVIVVV
>NC_018664.1|WP_144276026.1|2337391_2337643_-|DnaD-domain-protein
MDLDTDKEFGELVKLYQECIGQPNGLTVNWISQMLEKYGFEWCKNTMLIAEEQGKRSKSYVKGILENWKNKVGMQLEKKDNLI
>NC_018664.1|WP_014968345.1|2336685_2337084_-|Holliday-junction-resolvase-RecU
MKYVNKCKLFEEEVIRSNESYEYKKIALIQKINTPWKVIRNGKKIVSAFPEGKSTLDFRGTVKGGVSISFDCKESEDDRGLPLSYIQPHQIEYIRKALDMDEASFILFYIKAYNKRFFIGGQIVISYWDRWQ
>NC_018664.1|WP_014968344.1|2336091_2336586_-|hypothetical-protein
MNMQKQILVVNKETEEKLEEITFNCGYNIAFTNLTDDGSIRHVRSLDNGKFGEKHWIISYIYKPIAEKLVKKYQELRHIRPTRILFIEEMDWIPPDSIKPKKHWVAKASKANKHLSSMIGYDYVMETRSYFIERISRSQIIELLCHELRQIDEYGDIASHDVED
>NC_018664.1|WP_014968354.1|2343934_2345485_+|recombinase-family-protein
MQYCIYLRKSRSDEEAEQRGEGETLARHEKILLDLARKLKLNITKIYKEVVSGETISSRPIMQQLLSEVEEKLWSGVLVVEVERLARGDTIDQGTVSQAFKYSNTKIITPVKTYDPNNEFDEEYFEFGLFMSRREYKTINRRLQRGRLESVKEGKYVGNTPPYGYVRKKLEKEKGYTLEPHPEQSDIVKLIYKLYTEENIGVSLIVRRLEELKIPTAKGGYWSTSTLRGILNNPVYIGKIRWKHRPQVKKVKDGEIIKERPRSNDVVIVDGLHEAIIDEETFNKAQEILSENSSVPVPTKYTIKNSLAGIVKCGKCGRNMNRRPYGERQPATLMCPVPQCSNVSSQLHLVEQKLLESLEKWLDKYKLKINSNTDNNNLSLELDVVKKSIQTINEELETLNTQSDKLHDLLEQGIYSTEKFLERSKIISEKISKLKDNKSNLEKELNQNRLKEESDRTIIPKIERILKTYNTLETPDQKNELLKEVLTEVEYNKEVGGRWHAKPDDFKLVVHPKIPK
>NC_018664.1|WP_014968355.1|2345529_2345892_+|manganese-catalase-family-protein
MIGTIVWKLIKDAPISKIKGTPFEAYYVSHGKALYPANAGGHPWTASFIQSKDDPIASLHEDMAAEQKARATYEYLIRVSDDPGVKDTLRFLREREVVHFQRFGEALCIVQEALDSKKYH
>NC_018664.1|WP_014968356.1|2346105_2346348_+|ferrous-iron-transport-protein-A
MKDSKAQSLNTLPIGSVVKIDSILTTGEHRRRILDLGLIPGSIVTIERSSPSGNPIAYRIRGSLIALRNEEAQSIKVNIL
>NC_018664.1|WP_014968357.1|2346369_2347140_+|50S-ribosome-binding-GTPase
MGLTSQSSGFSLLKEKFSIEKKSKDEIIIALAGNPNTGKSTLFNSLTGLRQHTGNWPGKTVTNAKGSFKYKDKDFLLIDLPGTYSILANSAEEEVARDFICFGHPDLTVVITDSTCLERNLNLALQVMEITDNVIVCLNLMDEAKRKGISIDIKKLEQLLGVPVIPIIARDGKGIDDLLEVIYKVVQKEIVPSPYKIKYSEHIENYVSKVQKRLSDSLYDKLNKRWISLRLLDGDKEILNNIDSILTSRMSGDIDE
>NC_018664.1|WP_014968358.1|2347132_2348521_+|ferrous-iron-transporter-B
MSSVFKNNIDKLMCLVEEQESKSLGDDIVTTIYQNAERIASSVTTVKDNRKIKWDEKLDNILTSRLTGFPIMILLLAGVFWVTIVGSNYPSELLSNMFFKLEDKITLLFNYFNSPEWLHGILVLGMFRGLGWVVSVMLPPMAIFFPIFTLLEDFGYLPRIAFNLDNMFRKSGTHGKQALTMSMGFGCNAAGVIASRIIDSPRERLIAIITNNFVPCNGRFPILIAMSMIFIGTFSNKYSTVLASLSVVLLVLIGVYITLLVSKLLSKTVLKGVPSSFTLELPPYRKPQLGRILVRSLLDRTLFVLWRAVIVAAPAGAITWLIANTSIGDISLLNYIANILDPFGKLLGLDGFILMAFILGIPANEIVLPILIMSYMSKGSMLEFDTLDSLKNLLLNNGWTIITGINFMLFSLLHFPCATTLLTIKKETNSTKWTIFTLLITTLSAIVVTFLVSMLGKLFGIS
>NC_018664.1|WP_014968359.1|2348582_2349005_-|DNA-binding-protein
MLSPSLEDYLEELYRLKVNNKEIRVKDIAYCLDVSMPSVVNGLRRLGRLDYIIYEPYEKIEITEKGKKKGKFLVMRNKILKDFIDVIESDCDSEKEAEAMEHYLSISTIKCIEKMVAFLKNNTHILDKMINYEIESQLND
>NC_018664.1|WP_014968360.1|2349230_2349455_+|alpha/beta-type-small-acid-soluble-spore-protein
MSNNNRNSSNKIVVPEARQALNQMKTEIASELGLSNYSSIDKGTLTSRQNGYVGGYMTKSLVEMAQRNMSGSSK
>NC_018664.1|WP_014968361.1|2349507_2351538_-|methyl-accepting-chemotaxis-protein
MKNLYINKINNIKNKILIPTIALLLVSITLLGFIGYHTQKQSTYKVLEEMLTAQVNSFEQSIEENIKTSKKAKESINNTLVNIAKSIERQTRFIPEEDMNRSLSEICRELSIDRINIADETGVTKWSSDEDGLAYDFNSDEEARKYLSAITDKTFTTIDENITTAEGKEMHFIGVARQDRPGFIQIGIETSLLDGINTDVDISSIARLTSFGNGGYMIVLNSDGVILSHQDHNLIGKNIKEFDWGEKLLKQSSGKFEFEYLRKNNYISFKKYNSNTIIGATIPSEEYIKGINVFIRNVFITAIVTLILTSIFVNILNNRVIVKRLNKGLKYINEIEKGNLNANFDVVGNDEISLLMKGLHNMNISLRSILSEISEFVEKVGNMSNTLSDSSEQTTVAGQEIAASVAEIASGANEQVREVQEGILKLERLSDAMNEITQDSSTIEEKAIEIQSQNRRNVQAMSVLREKFIDNEKSTQNVTLKTNSLSEKSAQIENIIEVINGIAEQTNLLALNASIEAARAGEAGRGFSVVADEIRKLAEESMSASNKIEVIINSIGEDIRETKLSMQDVSKIVVEANHELHNTVNEFDLLRESNNAIVKLIGNLHEVINKSNKDKDEVMKAMDDVASVSQQTAASTEEISASTEEQASTFEGISYIAQELNQLSEGLVKIVERFNI
>NC_018664.1|WP_014968362.1|2351631_2352138_-|ferritin
MLSQKLLDALNDQFNYELLSAHYYIAMAAYCADQDLDGFANFFMVQAEEERFHAMKFYNYINEVDGRANLEGISTPKNDFESITDVFQNALSHENSVTKRIYNLMDIAQDEREHATISFLRWFVDEQIEEEASMKTIIKKLERLGNDNHGLFVLDQELGQRVFTPPTN
>NC_018664.1|WP_014968364.1|2353083_2353770_-|phosphatase-PAP2-family-protein
MKNKHKITREIPKKSLVKYLLGLFIAVLFFIVFMNFSTKVRGISEGIYFDKLILSRIHNHINQDIKNIMIFISFLGSAKFYLPLCSFLTIYLLRKKHYIESIGLINGVLGSAIVNFVLKRYYVRVRPEMYFQVQETGYSFPSGHSMVAISFYFICTYLLVRNRPWDIKKIIIWMSTIVFVTLIGFSRIYLGVHWPTDVIGGLSLGFVWLYFNIVLVELLHKKYKKPIR

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018664_4	4.4|2342801|35|NC_018664|CRISPRCasFinder	2342801-2342835	35	MN693584	Marine virus AFVG_25M163, complete genome	8873-8907	6	0.829
NC_018664_2	2.1|704792|36|NC_018664|CRISPRCasFinder,CRT	704792-704827	36	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	286248-286283	7	0.806
NC_018664_2	2.1|704792|36|NC_018664|CRISPRCasFinder,CRT	704792-704827	36	LT598654	Phage NCTB genome assembly, complete genome: monopartite	177611-177646	7	0.806
NC_018664_2	2.14|705655|36|NC_018664|CRISPRCasFinder,CRT	705655-705690	36	NZ_CP045275	Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence	101024-101059	7	0.806
NC_018664_1	1.2|264881|36|NC_018664|CRISPRCasFinder	264881-264916	36	KP282674	Acidianus bottle-shaped virus 3 strain ABV3, complete genome	20826-20861	8	0.778
NC_018664_2	2.6|705123|37|NC_018664|CRISPRCasFinder,CRT	705123-705159	37	NC_048773	Aeromonas phage 4_4572, complete genome	21222-21258	8	0.784
NC_018664_2	2.6|705123|37|NC_018664|CRISPRCasFinder,CRT	705123-705159	37	MK838115	Aeromonas phage LAh_9, complete genome	74368-74404	8	0.784
NC_018664_2	2.6|705123|37|NC_018664|CRISPRCasFinder,CRT	705123-705159	37	NC_048775	Aeromonas phage LAh_8, complete genome	74659-74695	8	0.784
NC_018664_2	2.6|705123|37|NC_018664|CRISPRCasFinder,CRT	705123-705159	37	NC_048774	Aeromonas phage LAh_6, complete genome	36133-36169	8	0.784
NC_018664_2	2.31|706791|36|NC_018664|CRISPRCasFinder,CRT	706791-706826	36	KU886274	Freshwater phage uvFW-CGR-AMD-COM-C493, complete genome	27490-27525	9	0.75
NC_018664_2	2.34|704792|38|NC_018664|PILER-CR	704792-704829	38	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	286248-286285	9	0.763
NC_018664_2	2.34|704792|38|NC_018664|PILER-CR	704792-704829	38	LT598654	Phage NCTB genome assembly, complete genome: monopartite	177609-177646	9	0.763
NC_018664_2	2.47|705655|38|NC_018664|PILER-CR	705655-705692	38	NZ_CP045275	Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence	101022-101059	9	0.763
NC_018664_5	5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR	2343168-2343202	35	MT423824	Staphylococcus virus pSp_SNUABM-S, complete genome	9924-9958	9	0.743
NC_018664_5	5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR	2343168-2343202	35	MT423823	Staphylococcus virus pSp_SNUABM-J, complete genome	10502-10536	9	0.743
NC_018664_5	5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR	2343168-2343202	35	MK075004	Staphylococcus phage phiSP119-1, complete genome	8815-8849	9	0.743

1. spacer 4.4|2342801|35|NC_018664|CRISPRCasFinder matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 6, identity: 0.829

ttatgtgtt-aaaaactttattccagtatcatcaac	CRISPR spacer
-tctctgttgaaaaacttgataccagtatcatcaat	Protospacer
 * * **** ******** ** *************.

2. spacer 2.1|704792|36|NC_018664|CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 7, identity: 0.806

attctttaattctctatattttttttgcttatactc	CRISPR spacer
attctttaattctgtatattttttttgcctgaatat	Protospacer
************* **************.*. *. .

3. spacer 2.1|704792|36|NC_018664|CRISPRCasFinder,CRT matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.806

attctttaattctctatattttttttgcttatactc	CRISPR spacer
actcaaaaattctctatatattttttgtttatactt	Protospacer
*.**   ************ *******.*******.

4. spacer 2.14|705655|36|NC_018664|CRISPRCasFinder,CRT matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 7, identity: 0.806

taaaaataataagtaatttattttattttcatatta	CRISPR spacer
taaaaataataaataatttattttagttgaaagttc	Protospacer
************.************ **  * .** 

5. spacer 1.2|264881|36|NC_018664|CRISPRCasFinder matches to KP282674 (Acidianus bottle-shaped virus 3 strain ABV3, complete genome) position: , mismatch: 8, identity: 0.778

aaaaaatcttgaaacaagacaaaagaatttagaaga	CRISPR spacer
ataaaatcttgaaaaaagataaaagaattaaaactt	Protospacer
* ************ ****.********* *.*   

6. spacer 2.6|705123|37|NC_018664|CRISPRCasFinder,CRT matches to NC_048773 (Aeromonas phage 4_4572, complete genome) position: , mismatch: 8, identity: 0.784

atccatcatacaattcatcaaatgtaaattgatcctt----	CRISPR spacer
attcatcatacaattcttcaaatgtatact----cttgacg	Protospacer
**.************* ********* *.*    ***    

7. spacer 2.6|705123|37|NC_018664|CRISPRCasFinder,CRT matches to MK838115 (Aeromonas phage LAh_9, complete genome) position: , mismatch: 8, identity: 0.784

atccatcatacaattcatcaaatgtaaattgatcctt----	CRISPR spacer
attcatcatacaattcttcaaatgtatact----cttgacg	Protospacer
**.************* ********* *.*    ***    

8. spacer 2.6|705123|37|NC_018664|CRISPRCasFinder,CRT matches to NC_048775 (Aeromonas phage LAh_8, complete genome) position: , mismatch: 8, identity: 0.784

atccatcatacaattcatcaaatgtaaattgatcctt----	CRISPR spacer
attcatcatacaattcttcaaatgtatact----cttgacg	Protospacer
**.************* ********* *.*    ***    

9. spacer 2.6|705123|37|NC_018664|CRISPRCasFinder,CRT matches to NC_048774 (Aeromonas phage LAh_6, complete genome) position: , mismatch: 8, identity: 0.784

atccatcatacaattcatcaaatgtaaattgatcctt----	CRISPR spacer
attcatcatacaattcttcaaatgtatact----cttgacg	Protospacer
**.************* ********* *.*    ***    

10. spacer 2.31|706791|36|NC_018664|CRISPRCasFinder,CRT matches to KU886274 (Freshwater phage uvFW-CGR-AMD-COM-C493, complete genome) position: , mismatch: 9, identity: 0.75

-ttactatagcaaggtctaaagctttggcaattgctc	CRISPR spacer
gtcgttgt-ccaaggtctaaagattttgcaattgctg	Protospacer
 *...*.*  ************ *** ********* 

11. spacer 2.34|704792|38|NC_018664|PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.763

attctttaattctctatattttttttgcttatactcgc	CRISPR spacer
attctttaattctgtatattttttttgcctgaatatta	Protospacer
************* **************.*. *. .  

12. spacer 2.34|704792|38|NC_018664|PILER-CR matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.763

attctttaattctctatattttttttgcttatactcgc	CRISPR spacer
actcaaaaattctctatatattttttgtttatacttaa	Protospacer
*.**   ************ *******.*******.. 

13. spacer 2.47|705655|38|NC_018664|PILER-CR matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 9, identity: 0.763

taaaaataataagtaatttattttattttcatattagc	CRISPR spacer
taaaaataataaataatttattttagttgaaagttctt	Protospacer
************.************ **  * .**  .

14. spacer 5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR matches to MT423824 (Staphylococcus virus pSp_SNUABM-S, complete genome) position: , mismatch: 9, identity: 0.743

tattgatactactttttcttttaccttaaatgcta	CRISPR spacer
ttaagttgtgactttttctttttctttaaatgcta	Protospacer
*   * *.. ************ *.**********

15. spacer 5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR matches to MT423823 (Staphylococcus virus pSp_SNUABM-J, complete genome) position: , mismatch: 9, identity: 0.743

tattgatactactttttcttttaccttaaatgcta	CRISPR spacer
ttaagttgtgactttttctttttctttaaatgcta	Protospacer
*   * *.. ************ *.**********

16. spacer 5.4|2343168|35|NC_018664|CRISPRCasFinder,CRT,PILER-CR matches to MK075004 (Staphylococcus phage phiSP119-1, complete genome) position: , mismatch: 9, identity: 0.743

tattgatactactttttcttttaccttaaatgcta	CRISPR spacer
ttaagttgtgactttttctttttctttaaatgcta	Protospacer
*   * *.. ************ *.**********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2721426 : 2728322	9	Staphylococcus_phage(50.0%)	NA	NA
DBSCAN-SWA_2	2843988 : 2852676	10	Planktothrix_phage(16.67%)	transposase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_018664|2721426:2728322|DBSCAN-SWA
TATGGAATCAGTTTATATGAAAAGAGCTATAGAGTTAGCTAAAAAAGGTGAAGGTCATGTTAGTCCTAATCCCTTAGTTGGAGCAGTCATTGTGAAAAATGAAAGTATAATAGGTGAAGGTTACCATGGGTTTTATGGTGGAGATCATGCAGAAATAAATGCATTAAAAAATTCTACTGAAAGTGTTGAAGGTAGTACTATGTATGTTACTTTAGAACCTTGCTCTCATTTTGGGAAGACACCTCCTTGTGTTAATGCTATTGTGGAAAATAATATAAAAAAGGTAGTCATAGGGCTAAAAGACCCTAATCTTTTAGTATCTGGTAGAGGTATCCAAATACTTAAATCTAATGGAATTGAAGTTGTTACCAGTGTATTAGAAGATGAATGTAAAAAGTTAAATGAAATATTTTTAAAGTATATTACAACAAAGACTCCTTTCGTAATACTAAAATATGCAATGACTCTTGATGGCAAAATAGCAACTCATATTGGTGATTCTAAATGGATCTCTAATTCATTGTCTAGAAAACATGTCCATGAAATTAGACATAAACTCTCATCCATCATGGTTGGAATAGGGACTGTTCTGAAAGACAATCCCAGTTTAAATACACGCTTAGAAGATAAAGAAGGCTTAGATCCAATTAGAATTATAGTAGATACGAAGGGAAGAATTCCATTAGACTCTAAAGTTATTAATCTAAAGTCTAGTTCAAGGACTATAGTTGCCACTACTGAGTTAGCCCCTAAAGACAAATTGAAAGCCTTAGAAGATAAGGATGTAGAAATAATAATTACACCAGTTAAGGATAGTTATGTAGATCTAATTTATCTTTTAAAATCACTAGGAAGTAAAGGAATTGACAGTATTCTTCTTGAGGGTGGCAGCGAACTAAGTTTTAGTGCCTTACAAGAAAACATTGTTGATAAAGTAGTTGCATTCATATCACCTAAAATAATTGGTGGAAGTTCGGCTAAAACCCCTATAGGTGGTACTGGTATTGAATTTATGAAAGATGCTATAAATCTTAACAATATATCTTTAAAAACGTTTAATGAAGATATTATGATTGAAGGTTATATTGAAAAGGAGTGATTATTCTTGTTCACTGGCTTAGTTGAAGAGATCGGAACTATAAAATCTATTAAAAAAGGAACTAACTCTGCTCAAATCACTATAATCGCTGATAAAGTTCTTTTAGATGTAAATTTAGGAGACAGTATATGTACTAATGGTGTTTGTCTTACTGTAACTAGCTTTTGTCCTAATTGCTTTACTGTAGATGTTATGGCTGAAACAATGAGAAAAAGTAATCTTGACGCTCTTACTCCTGGCAAAAAAGTTAATTTAGAACGAGCACTGAGACTAGGTGATAGATTAGGAGGTCATATGGTAAGTGGTCATATTGATGGAATTGGAACTATATCTAACTTAGAAAAAGAAGATAATGCTACTTGGGTGACTATAAGTACGTCTTATGACCTTCTAAAGTACATTGTCTACAAAGGGTCTATTGCTATTGATGGAGTAAGTCTGACTGTAGCTTATGTAGATGATAGTAATTTTAAAGTATCTATAATTCCTCATACTAAAGACATAACCACACTTTTAGATAAAAAAGTAGGAGATAAGGTTAATTTAGAATGTGACATGATAGGAAAATATGTTGAGAAGATGTTATCGCCAAAAGATGCTATTACTGAGTCTAAGGGTAGCGTAACTGTAGATTTTTTAAAAGATCACGGATTTATCTAAACAATTTAATTTAAAAATTAAGGAGTGATATTAATGTTCCACTTTAATACTATAGAAGAGGCTATCGAAGATATAAAAAACGGAAAAATAGTAGTAGTTGTTGACGATGAAAATAGAGAAAATGAAGGCGACTTACTCATGGCTGCTGAAAAGGTAACCTCAGAAGCTATAAACTTCATGGCAAAACACGGCAGAGGCCTAATATGTATGCCTATAATAAAGGAAAGATTAGATGAACTTAATATAAACCAAATGGTGAGCAAAAATACTGATTCTCATCATACTGCTTTTACAGTTTCAATAGACGCCATAGACACAACTACTGGAATATCTGCTCATGAAAGATCTCATACCATTTTAAAAGTTCTAGATTCTAGTTCAACAAGTAGCGATTTCAATAAACCAGGTCATATATTCCCCCTAGAGGCTAAGGATGGTGGTGTTTTAAGAAGACCTGGTCACACTGAAGCTGCTGTTGACTTAGCTAGATTGGCTGGGCTATACCCTGCTGGAGTTATTTGTGAAATTATGAATGAAGATGGATCTATGGCTAGAATACCCGACCTTATGACTTATGTTAAAGATCATAATTTAAAAATAATTACCATAGCAGATTTAATAGCTTTTCGCCGTAAAACAGAATTGTTAGTAAAAAAAGTTTCTGAGTGTAATCTACCTACAAAGCATGGTGACTTTAAAATGGTGGGATACGAAAATATTTTAAATGGTGAGCATCATATAGCACTAGTGAAAGGTAATATATCTAGTGATTCACCAGTTCTAGTAAGAGTTCACTCAGAGTGTCTTACTGGAGATGCTTTTGGTTCTTTAAGGTGTGATTGTGGAGAACAGCTTGATGAGGCTATGAAAAAAATAGAATCTGAAGAATCAGGTGTACTTCTATACATGCGTCAGGAAGGTAGGGGGATTGGACTTATAAATAAAATAAAAGCTTATAATCTTCAGGATAGTGGTATGGATACTGTTGAGGCTAACTTGGCACTAGGTTTTCCTGATGACATGAGAGACTATGGTATAGGGGCTCAGATACTTTCTGACCTTGGAATAAAAAAGATTAAGTTAATGACTAATAATCCTAAAAAACTTTCTGGACTTTCTGGCTATGGTATAGAAATTGTAGATAGAGTTCCTATACAGATGAATCACAATGAAAAAAATAAGCATTATCTTGAAACTAAAAAAGAGAAGTTAGGACATATTCTAAATTTTAAGGAGGAAAAATAATATGAAAATCTATGAGGGAAATTTAGTATCTGAAGGACTAAGATTTGGAATTGTTATAGGAAGATTTAATGAATTTATAGGATCAAAGCTTCTATCTGGTGCTTTAGATGGTTTTAAACGTCATGGTGTACATGAGGATGATATTGATATTGCTTGGGTTCCTGGTGCATTTGAAATTCCTCTTATAGCTAAGAAAATGGCAAAGTCTAAAAAGTACGATGGTGTTATTTGTCTAGGTGCTGTTATAAGAGGTTCTACTCCACACTTTGATTATGTGTCTAGTGAAGTTTCAAAAGGAATAGCTAGTGTATCTTTAGATACTGAAATACCAGTTGTCTTTGGAGTTCTAACTACTGATACTATAGAACAAGCAATAGAAAGAGCAGGAACAAAAGCAGGAAATAAAGGATATGAAGCTAGTATTACTGCCATAGAGATGGCTAATTTGCTAAAAGAAATTTAAGACTTATTTAAGTCAAATAAAATTAACTCTGCCAAATTGTAATATTCAGCAGAGTTAATTTTATTTGATTTCTAAGTTTACTTATATTTTTATAAATCTAAATATGTAGTTTGACTACTCAAAGCATTCTATAAATTCTTTTACCACATTTGGATCAAACTGCTTTCCCGCTTCATTTTTTATTATGTATATAGCTTCCTCTGAACTTTTCGACTCTTTATAAGGTCTCTCTGCAACTATGGCATCATATGTATCTATCACACTTACTATCCTAGCACTTAATGGAATTCTTTCTCCTTTTAATCCTTGAGGATACCCTTCTCCATCCCATCGTTCATGGTGATAGTATGCTATATCTAATATAATTTTTAGTTCATCAGATTCAAAATAATTATTTTCTTTGTTGAACATGTATAGTAATATATCTCTACTATAGGTTGGGTGTTTTCTTATTTCAGTAAATTCTTCTTGTGAGATTTCTGAAGGCTTGTCTATTATTGATTGAGAGATTTCGATTTTACCTATGTCATGTAATAGTGCTCCCCATGATACTGCTTGTATGTCTTTTATTTTATTATAAAATCTACTAGATAGTATCTCTGTATATTTAGATACATTTTGGGAATGCTCCCATGTATATTTACTGTTTTTACTTAATATTGTTTGAAGTATATCTATTAAATCTCTGTCTTTATCTAATTTGAGCATAGTTGATCTCCATTTCACATCTTTATACATAGTATTTATATACTCAATTATATAAATACTTTCTAAGTAATAGTTACAAAAAGCAACTTTCATTTAATTGCTTTTAAATATAGTCTCTATATCTAATTTTTCAATAATAGCTTGTCTGTACTTTTCACCAGAACGTCTACCTCTTAATATATCAGTAAGATAGTTTTCATTAACTCCAATATCTTTTGCTAGTTGTCTTTGTGTCATATCAAGTTCTACAAGTCTTTTCCTTACTTTCATAGAAAAATACGGTATCGTATTTCGATTACTTTCCATTCCATCAACTCCTATCCTTATGATATTTAAACTATACTTCAATGTTGTTTTTTGTATCAAGGTAGGTTAAACTGTTGTTGTAACTTGTATTTATAGTTACACTTAGTGACTACTTTCTCCTCTTAATCAGAATCTATATAAAGTCAAACTTCCTGTCCTTAAAATCAGTTTCCACCGCAATCCATAAAGAATATCTTCTAGTAAATCTTCCTAATAACTTTCTAATTAAATAAACCAAAATACCAAACTGTTTAAATAATCTAAGCGATGTATCTATAAAAGTGAATTTTTAAATATTAAAAGCTTCCTATTTGTGTTATTTTAGTTATATATCTATAAATCTATCAAAGTAAAGCTGAGTCTTTATAGTACCTATTAATTTTTAAAGTATGTTAAAATTACTTATATATTTTTCATTTAAATTTTACTAATATTTTACCACAAACGTGAACTTTGTCAAGAAATTTTTTACTAAAAAGATTTTTTTGTTGAAAAAGGAGGTTTTTTACCATTAAAGAGAACTTTTCTTCTGCAGAAATCGGAAGCAGGATACAACAAAAGTTAACTGAGTATAATCTAAAGCAGAAAGATTTATGTAATCTAACTAATCTTTCTAAGAACGCAATAAGTAATTACATATCTGGAAATAGGGTTCCTGATACAAATTCTATTTACAAGATATCGATCGCTCTAAATGTATCTATAGAATGGTTACTAACAGGAGAGGAAACTTTAAGGACTCCTAATAATAGTCTAGGAAATTTATCTGTTGAAGAAATAAGGATCATTACTTTATTTAGAAAGCTGAATTCTATAGAAAGAAATAAGATAGAAGGTATGCTTGAAATAAAAGTTTTTGAATCTAAACAGGAGAAAAAAACAACATTATCAAATTGCTAGAATGGAAAAGAAACAAAGATCAATAATAGTTTTTTTCATTTACTTATTTTGATAAGATTTCTTATCATTTTACTATGATATTATTCTATTTTAAAAGGCTGACACATTAATTTTATATTTATAGTGCAGCCTTTTTTCTCTTTGCTTTTCAATATAGTTTAAAATAGTATTTAAATCAGTATAACTGTACTATTTGAAGGAGTTTATATAATTTTCATATCCTCTATTTCTAAGAGTACAAGACGGACATTCTCCACATCCACTTCCTTTAATACCATTATAGCAAGTTAATGTTTCATTTTTAATTACCTCTAATACCCCCAAGTCATCCGCCATCTTCCAAGTTTCCTCTTTATCTATCCACATTAAAGGAGTATGTACTACATACTCATAGTCCATAGATAAGTTCAAAGTTACATTTAAAGATTTTATAAATACATCTCTACAATCCGGATATCCACTAAAATCACTTTGTGAAACTCCAGTTATTATATGTTTTATATCCCTTTGTTTTGCAAATACCGCTACAAACGTAAGAAATAGCATATTTCTTCCATCAACACATGAATTAGGTACTTCACCTTCACTTGCCTCTTTATCTACTTTTATATCTGTTCTTGTAAGAGAGTTTGGAGCTAATTGATTTAAAAGTGACATATCTAATATGTGATGTTCAAAATTATGCTTTTTACATATTTCCTTGGCACATTCCAATTCTTCGCTATGTCTTTGATTATAGTCAAAAGACACTGCTATTACTTCCTTAAATCTTTCTTTAGCCCAAAATAAGCAAGTTGTACTATCTTGGCCGCCGCTAAAGACTACTACTGCACTTTCATTTTTCATTTGCTTACACTCCTTTTTGATTTGGATCCCATATAAATTTGTGAAGTTGTAATTGAAAAGTTACATCGTTCATATTATTTTCCTTTATGAACTCAACTATATCTTTTGCATCAATATTTTCGTATACTCCACTTATATATACATTTGTTTTCTTAGTTAAATCAAACTGTTCTATAATCAATTTTGCTTTTTCTAAATCTTCCATGCTACCAGCTACAAACTTTACTACATCTTTTTCTTTTAGATATTCAAAATTTTCTAATAACATTTCATTTTCCATATTGCTATAAGGCAATTTGTAGTCCATAGTGAATCTCAGTTGATTTATTTTTATGTCTTGAAATCTTTTTAAACTTATACTTCCATTAGTCTCTATCTCTATTGAAATATCATTATCCTTAGAAAGATATTCTAGTAATTCATATATGTCCTTTTGTATTAGGGGTTCTCCCCCTGTTAAAGTTACATTTTTTACTTTAGTTTGCTTTATATAATTATAAATTTCTTCTTTAGTCATGATTTCATACTTTACATCACTCTTATTAGCCCACTGTGTATCACAGTATCTACAGTTTAAATTACATTCTGCAAATCTTATAAATAGAGCTAACTGTCCACTTAATTTGCCCTCACCATTTATACTTATAAACTTTTCAACTACTCTATACAT

Protein sequences of DBSCAN-SWA_1

>NC_018664|2721426:2728322|2726416_2726806_+|WP_081580486.1|DBSCAN-SWA
MKENFSSAEIGSRIQQKLTEYNLKQKDLCNLTNLSKNAISNYISGNRVPDTNSIYKISIALNVSIEWLLTGEETLRTPNNSLGNLSVEEIRIITLFRKLNSIERNKIEGMLEIKVFESKQEKKTTLSNC
>NC_018664|2721426:2728322|2725006_2725600_-|WP_041702164.1|DBSCAN-SWA
MLKLDKDRDLIDILQTILSKNSKYTWEHSQNVSKYTEILSSRFYNKIKDIQAVSWGALLHDIGKIEISQSIIDKPSEISQEEFTEIRKHPTYSRDILLYMFNKENNYFESDELKIILDIAYYHHERWDGEGYPQGLKGERIPLSARIVSVIDTYDAIVAERPYKESKSSEEAIYIIKNEAGKQFDPNVVKEFIECFE
>NC_018664|2721426:2728322|2724430_2724892_+|WP_014968727.1|DBSCAN-SWA
MKIYEGNLVSEGLRFGIVIGRFNEFIGSKLLSGALDGFKRHGVHEDDIDIAWVPGAFEIPLIAKKMAKSKKYDGVICLGAVIRGSTPHFDYVSSEVSKGIASVSLDTEIPVVFGVLTTDTIEQAIERAGTKAGNKGYEASITAIEMANLLKEI
>NC_018664|2721426:2728322|2722530_2723184_+|WP_014968725.1|DBSCAN-SWA
MFTGLVEEIGTIKSIKKGTNSAQITIIADKVLLDVNLGDSICTNGVCLTVTSFCPNCFTVDVMAETMRKSNLDALTPGKKVNLERALRLGDRLGGHMVSGHIDGIGTISNLEKEDNATWVTISTSYDLLKYIVYKGSIAIDGVSLTVAYVDDSNFKVSIIPHTKDITTLLDKKVGDKVNLECDMIGKYVEKMLSPKDAITESKGSVTVDFLKDHGFI
>NC_018664|2721426:2728322|2727656_2728322_-|WP_014968731.1|DBSCAN-SWA
MYRVVEKFISINGEGKLSGQLALFIRFAECNLNCRYCDTQWANKSDVKYEIMTKEEIYNYIKQTKVKNVTLTGGEPLIQKDIYELLEYLSKDNDISIEIETNGSISLKRFQDIKINQLRFTMDYKLPYSNMENEMLLENFEYLKEKDVVKFVAGSMEDLEKAKLIIEQFDLTKKTNVYISGVYENIDAKDIVEFIKENNMNDVTFQLQLHKFIWDPNQKGV
>NC_018664|2721426:2728322|2725693_2725906_-|WP_014968729.1|DBSCAN-SWA
MESNRNTIPYFSMKVRKRLVELDMTQRQLAKDIGVNENYLTDILRGRRSGEKYRQAIIEKLDIETIFKSN
>NC_018664|2721426:2728322|2726995_2727652_-|WP_014968730.1|DBSCAN-SWA
MKNESAVVVFSGGQDSTTCLFWAKERFKEVIAVSFDYNQRHSEELECAKEICKKHNFEHHILDMSLLNQLAPNSLTRTDIKVDKEASEGEVPNSCVDGRNMLFLTFVAVFAKQRDIKHIITGVSQSDFSGYPDCRDVFIKSLNVTLNLSMDYEYVVHTPLMWIDKEETWKMADDLGVLEVIKNETLTCYNGIKGSGCGECPSCTLRNRGYENYINSFK
>NC_018664|2721426:2728322|2723217_2724429_+|WP_014968726.1|DBSCAN-SWA
MFHFNTIEEAIEDIKNGKIVVVVDDENRENEGDLLMAAEKVTSEAINFMAKHGRGLICMPIIKERLDELNINQMVSKNTDSHHTAFTVSIDAIDTTTGISAHERSHTILKVLDSSSTSSDFNKPGHIFPLEAKDGGVLRRPGHTEAAVDLARLAGLYPAGVICEIMNEDGSMARIPDLMTYVKDHNLKIITIADLIAFRRKTELLVKKVSECNLPTKHGDFKMVGYENILNGEHHIALVKGNISSDSPVLVRVHSECLTGDAFGSLRCDCGEQLDEAMKKIESEESGVLLYMRQEGRGIGLINKIKAYNLQDSGMDTVEANLALGFPDDMRDYGIGAQILSDLGIKKIKLMTNNPKKLSGLSGYGIEIVDRVPIQMNHNEKNKHYLETKKEKLGHILNFKEEK
>NC_018664|2721426:2728322|2721426_2722524_+|WP_014968724.1|DBSCAN-SWA
MESVYMKRAIELAKKGEGHVSPNPLVGAVIVKNESIIGEGYHGFYGGDHAEINALKNSTESVEGSTMYVTLEPCSHFGKTPPCVNAIVENNIKKVVIGLKDPNLLVSGRGIQILKSNGIEVVTSVLEDECKKLNEIFLKYITTKTPFVILKYAMTLDGKIATHIGDSKWISNSLSRKHVHEIRHKLSSIMVGIGTVLKDNPSLNTRLEDKEGLDPIRIIVDTKGRIPLDSKVINLKSSSRTIVATTELAPKDKLKALEDKDVEIIITPVKDSYVDLIYLLKSLGSKGIDSILLEGGSELSFSALQENIVDKVVAFISPKIIGGSSAKTPIGGTGIEFMKDAINLNNISLKTFNEDIMIEGYIEKE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014968724.1|2721426_2722524_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.8e-51	38.0
WP_014968725.1|2722530_2723184_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.2e-40	43.5
WP_014968726.1|2723217_2724429_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.3e-112	52.5
WP_014968727.1|2724430_2724892_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.2e-40	52.7
WP_041702164.1|2725006_2725600_-	HD domain-containing protein	NA	NA	NA	NA
WP_014968729.1|2725693_2725906_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081580486.1|2726416_2726806_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014968730.1|2726995_2727652_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.1e-57	50.0
WP_014968731.1|2727656_2728322_-	putative 7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	5.0e-38	43.4

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_018664|2843988:2852676|DBSCAN-SWA
ATTACCCCCTAGTTCCCACAATTTTACCGTCTTCAATTCTTATAATTCGATCTGCCATTTGGGCAATTTCTTCATTATGGGTTATCATAACTATAGTTTGACTAAACTTTTCACTGGTGATTTTCAACAATCCTAATACTTCTTGACCTGTTTTTCCATCAAGATTTCCTGTTGGTTCATCTGCTAATATTATTGATGGTTTAGTTGCCAGGGCTCTAGCTATAGCTACACGCTGTTGCTGTCCTCCAGAAAGATTATTTGCCATATTTGTCTGCTTATCTTTTAATCCTAATGTGGTTATAATTTGATTAATATATTCTTGATCTACTTTATTACCATCGAGCTCTATTGGTAATACAATGTTCTCGTAAACATTCAATATGGGTATAAGATTATAGCTTTGAAATATAAAGCCTATATTTCTACGTCTAAATATAGTTAATTCTTCATCATTCATATTAGATATATCATTATTATCTACTATTACTTTACCTTCTGTGGGTTTATCAAGCCCTCCTAGCATATGTAAAAGTGTGCTCTTACCTGATCCTGAGGTACCTACTATGGCTACAAATTCTCCCTTTTTAATACTGACATCAATACCATCTAATGCTTTCACTATGTTTGATTCTTGTCCATAGTATTTTTTAAGACTTTTTGCTGATAATATGCTCATATAGTTTCTCCCCTTCTAATTAAGTTTCTCTTTATATTCTTATAATAGCAACAAAGTATCTCAAACTAGTCACGAACTAGAACTGAAATATAACAGTTTTGTTACGTAAAAAAGCCGTAGTTTTAAAATAACTACGGCAATTGATTTAATAAAAATATTGAAAAGACTGTTCCTATTCCTTTTTGAGATTTAACTTTTATATATCCACCTTGTTTACTTATAATTTCCCTTGCAAGATATAATCCTACACCTACTCCCTCTTTATCTAAAACTTCTTTTCCTCTATAGAATCGCTTGAATATATTGTTAATATTATTCTCTTCTATACCTATCCCGTTATCTTCAATATCTATTCTAGTAAATATCTCAAAACTCTCTACTTCTATTTTTATAAGCCCTCCACTTTGAGTATACTTTACGGCATTTTCAAGTATATTAGAAATGGCTTCACTGATCCATTTTTTATCATGATGTATCTCAACATCTATATCACAGTTAACAGTAATATCTATATTCTTTTGTTGTGCTTTTATATATATACTACCTAGTGCTTGGGCTATGGTTTCCTCAAGCTTTGAATTTTCTTTGTTTAAAGATATTAATCCTGTTTCAAGTCTAGACATTTTTATAAGTGACTCCATAAGCCACTGAAGCTTTGTAGTCTGTAATTTCATATCGTGTAAGAAATTCTGTTGCTGTTCTCTTGATAAATCTCTTTCTATGAGTGTTTCATTATACATCAAAATATTTGCTATAGGAGTTTTTATTTGATGAGATATATCTGATATAAATGATTTAATATTATTTTGCTCATCAATTATTTTTTGTCTTTGATGACAGGTTAAATCTACTAGTTCTTTTAATTTACTTTCTAGCTTTGATAATAAGCTTTCTTTATTAACTTGAAATTCAATATTATCCTCTTGGGATAATATTTTATCTATAGTAACACACATTCTATCTGAAAATTTTAAAATTTGAGTTCTTATAATATATGTATAGGATATTACTGTAATTAATAATAGCAGAATAAAAATTATTGTTCCAACAAAAAAAGAATTAACCTGTCCTATATTTTGAGAAGATATATTAAGAAAACTATGTAGTCCTAAAAATATAAATAGTATAAATGAAATAGAAAGAGTTAAAAATATGATTCCAAATATTATATAAATTTTCTTATCTGATATTTCCTTCATGTTATATCACCTACCAAATGTAGCCTATACCATAAACAGTTTTAATATATTTAGGCTTAGCTGGATCATCTTCTATTTTATTTCTAAGCCTATTAATATTTACTGTTAGTGCATGTTCATCAACAAAGTTACAATCCTTATCCCATAAGGCCTCAAGTAAAGATTTTCTAGTTAGAACTTGTCCTCTCGATTTTATTAGTGCATTCAAAAGTTTATATTCTGTAGGGGTTAAGATAATGTCCTCATTATTTTTAAATACAGTCATTTTGTCAAAATCAATCTTTAAATTATCTATAATTATTGTATTTAGTGATTCAGTATTCTTTTTATATCTTCTAAGTACTGCTAGTACTCTTTCTCTTAATATGCTTAGACTAAAAGGTTTAGTTATATAATCATCAGCTCCAAGCTTAAAACCTGTAACTACATCAAATTCCATATCACAAGCTGAAAGAAATATTATTCCTATATCATTAGTTTCTCTTATACTTTTACATAAATCAAACCCACTTCCATCCGGTAGATTTACATCTAGTATGGCTAGATCTATGGGAGTTTTACTTAAAACTTCTATAGCTTCATTTATAGAATGTGCCGATATTACTTCAAAATTATCTGCTTGCAAGTTGAAACTTACTCCATTATTTAGTGTATCATCATCTTCTACTACTAGAATTTTTACCATATTATCCTCCTTCCTCTGCTTAGTTTAATGAAGTTGTGTCTAGATAAAATTAGTTTTTAAACAGTAATTACATTGGAAGTCCTTTTTAAATAAAGTACAATGATGTATCCCCTTTCTACGTGATGTTTAAATAACTAAAAACTGCACTTCCAAGAAAGTATCCTGAGAGAATCAAAGCTGTATTCCATATAAAGACTGCAAAAAATAAAAATAAAAGGTATTCTAAAATGTTTATTTTTAGAGCACCAGCTGGTATTGATACAATAGTTCTAATTCCTGGTATAAACATACTAAAAAATACACCTATTGCTCCCTTTTCTTTTAAAAAATCTATCTTTTTTCTTATATATCCTTTCTTTTTTTTATCTTTATAAAACCACTTATCTATTATATGCTTTCCACAGAATCTGCCTAATCCATACAGAATAACACTTCCTATAATACCACCTATAACTGATACTATTATCGCGAGAATAATACTTTGTCCATATTCTTTAACCCAAATTCCTGAAAGTGGCATAATTATCCCTGCTGACAGCCCTGGGGCATTTAAATATTCTAATAAAAATAAAATAAATAAAAATATCATGCCATAATGTAATAAATAGTAATTAATTGCTGCCATATTCATTTAATCGCCTCCACGATAATACTGTAACTCCCACAGCTAAAGCAATGGGGTTCTATCCTACCCAAGTTTCTTTTACACTCTCAGTATCTAAATTAGATATTTACAACATGTGAAAACTAGCTTGTATCAGATAGACTTTCACTAACTAAGCATATTCTAATGAATTACTTTAACGTTAGCATTACGCCCGCTTCAAGACGTTTGTTGATTTTATAAACCCATACTACTTATTAATTTATTTTCACTATTTTTAATTCTTTCGATTTCTTTATCATGTAGTTTTCTAAAATTTTCAAATCTTCTAAAGCACAAATCTCTATCTATTTCTTTTAAATCGTCTTTAACATTCATGATCAAAAATGCACTATACATATCTCTTTGTATTTTATAACTGCTAAAATCATTCCATCTATCACGCAATGTTTTTTTAGTGTATTTATCTTCTATATGACTATATTGCGATGCTCTAACTTTATAGGTATTTACTCCTATCAATACTTCATCGTTCCATTTTAATTTATTATCTAATATAGTTAACAACATTGCTGGTGCTTTATTTGCCAAACTCTTGCCAAATCTTTTCTTTTTATTAACTCTACCAGTTTTCTCATTAACAGTAGTTTCTTTTGCCCTAGCCTGAAGTCCTTTAAAATTCATAGTTTCAACTTTAATTTTATTTCCAAGCCCTAATATATAATTTGCTAATTTTTCATGTGATTGCTTTCTAATGTCAGCTTGTTTCCTTTGTATTTCTCTTAATTCATTTTGTGTTTTGACATATCTATTAGATTTAATCCATTTATCTCTATTTCCACGATTTATAGTGCCATTGTCATTATATTTATCAGGATTATTAGCACGTCTTTGTCTGTCCAACCTTCTATTTAACACTCTTTTTTCTTTCTCTATATTATTAATTTCTGGTGCTAATTCTAGCAATTTAACATCATATTTACTAGCTATGGCTATTGTTTGAGTTCCTATATCTATTCCTACATCTCCCGTTTCTATGCTATTCTTAGCTTGACCACTAGCTTTATTTACCTTAATAGGTGGAACTCCGCCCATAATTAATTGAAGATAGAATTTGTATTTACCACGAATAAATTTTCTAACAACTCTACAATATTTAACTTTATTCTGTAGTGCCATTTGTGCATATTCATCATTCTTTTTTATAATAACTGGTATAGATAGTTTATTCCATTCTAATTTATTATTTACAAATCTAATCCCTGTCTTATTGCTCTTTCCTTCTACACTATTCATTTCATCATATCTTTTAAAGTAAACTCTATTTGCTTTATGAAACATTAATTCTTGAAAAGCACTAAAACACCTAGTAGCTATCTTTTGAGCTGTGAAACTGTCTATATTTTTCTTAAACTTATGTTGCATTGGCTTAATAAAATCGTGGAGTGAATATTCTGTCAAGCCATATTTTTTATTCAGTTCTGAGAATCTCTTGTTTCTATCTTTACCTTTATCCATCCTTGCTACCTTTATATATTCCTTACTCTGCTTCATATATTTATATCTTTTAAATAATTCGCCTAAACAGCTATTATACATTTGTCTTGATATTTCTAATCGCTTATTTAATATATCTTCTTGAAATTTTTCAGTTTTTAACTTCAATGTTAATATAAAATTTGATTTTGTATCACTTGACACAACACTCACCTCCATTCTAATATCTTGTTTTTTGCTCTTCTACATACTTCTTAATATTTTCACTTGATACGCTTCCAGCAGTTGATACAAAATAACTTCTAGTCCATAGGCTAGGCATTTTACTTAATTCTACAAATTCTTCTCTAATGAGCTTACTACTCACTCCTTTTATCTTTTGCATTATGTCAGCTGGGCTTAATGATGGTAGACAATTTAAAAACATATGCGTATGATCTCTATCACATTCTATTGCTATAATTTCTACTTCTAATTTATCACATATGTCTTTAAATATTTCTTTAAATCTAATTTCTACATTTTGTATATCGAATATCTTCCTTCTATATCTAGGACAGAATACAAAATGATAATTAATTAATGATACTGTTGTTTGAGTCATTCTATAATTTTTCATAATATAACTATATATTAATATGTGTATGTATCCAATGGTTTTATACACACACTTTTAATTATTATGCATTTTGAAAGATTAAAAGAAGGCTATCCATCCCACGCCTGAAGGAGTGGGTTTTCCGCTAAGGCTTGTAATTCTTGATACGGAGTTATTCTGAATATCTAATCTAATATTAGTATAATCACTATTAAAGCTATACCTACAGAAATAGTTCCAAATATATTTCCTATAACCCTAGACAAAGATTTATCCTTAATAATACTTCACCTCTTTTATATTAAAACTAAAAATCCTAATTATTTCATTAAAGATTCATCAAAGCGAATAAGCTCAACTTTATTGTCCACCATCCAGAACTCAATAGAACAGCTTTTTTCTTTATCAATATATCCGATTATATCCATTCCTTGTTCTCTACGGTAGTAACTATCATTCCCATATGCACTTCTTATATCTGTATCATTATTACCAATCTTTATACCTTTACTTGTTTTTAACTCATCATCTGTAGCAATAACTCTCAAAATTTCATCTTCACTATTTACAGCAACTTCAATCCCTTTTCTTAAATTAAAGTAGTTATAATCAACAACATCTCTACTTTCTTTCATTTTATCTCCGTATTTTGATATTATTTTGCTACTACGAATATTATCATGTAGTCTTAAATCTTCAATATTTTCTTCACTCAAGTCTGTAGATTCTGCAAGTATATGATGAGTACCTCTTCCAAGATTAGGTTTGATTATGGAGTTAAAAAGTATACTTATAAAAATTGATATTATGGCAATAAAAATAATGCGATTTCTCATAAGTACCTCCACTCTATTTTTATACTAATTTTATTATCTATCAACTCCACATATATCTTATGTCCCATTTGCTCAACTAGCTGTTTCGTTATAGCAAGACCTATTCCTGTACTTTGTCCGCTTCTTGTACGATCCACTGTAAATGAACGATCAAATATATGACTAACGTCTTCTTTATTTATTAATCCTACAGTATCATTTGTAAAATCCATTATGATAACATCTTTATGTTGTTCTAGTGATATATCTATAATCTTATCCCCGTACTTGATCATATTTTGTATTAAATTTGCAATTACTCTTCTTACCGCATTCTCATCCCCAATAATTGATGGTACTTTTTCATCGATTTTAATAGCAGGATCTATTCCTTTATCTTGAAATTCATTATAAAATGCAGCCATTACATCACATAGCATGTTCGATATATTTATCGACTTAAGACTAAATTTATATTCGTTTGCCTCGAGTCTAGATAATTCATAAAAATTAGATATTAGTACTTCTAAAGACTCTGTTCTCTTCTTAACTATAGATATATATTGTGACTTTTCATCACTAGACAATGTGCTGTCTTCTATAAGCTGTATATATCCCTTTATAGAAGTAAGAGGAGTTCTTAGATCATGAGATATATTTACTATAGCTTGTCTAAGTTCTAAATCCATCTTCTTATACTTAGCTTCTATTTTCTGTTTTTTCTCTAAAAACTTATTTATCTCTAAAGCTAGTTTTTCTAATTCTTTATTTGGCATAGAAATTAGTAACTTTGAATTAGTTCTACTTTCATTTATTTTTTCAAGTTGATTACTTATGCTTTTAATTTCTCTTTGTTGTAAGAAATAAAAGGCGACAAATATAGCTAATGCCCCTATTAAAAAAATAATAATTAAGTTCTCCATAAATGCCACCTCTTTTTTCTAATTTATTTAATCTCTTTTTTCTTAAAAAGTATAATGGTTAATAATATGAATACTATTGCATATATAATACCTACACCATTTGCGGATAGTATTGTTTTAATAGTAACTTCCTCTTCCATTAGTTTAGATATCTGTTTTGTAATTAGAAAGTTATTAAGATACATAAGTTTATCTGACACAAAGTATGAAAGAACTCTTATAACTGTAGACGTCATCAGGAAAATACTTACATAAACAAGTGAATATGCAGTATTGTTTTTTATAGCAAACGCTAGAAAGGTACCTATTGATATAGCACCAATACATAATGTCATTGTAGTTAATAATCTTTTTAGGTAGTTCAGTACTATTTCTGAAGTGACACCATCTAATCCAAGTAATATTATTCCGCTACCAAAGAATATAGTTAATATAATCGTAACTGATATTAAAGAAAGAATAACTGTTGTTATAATCTTTGATAAAACTAATTTACTTCTTGGAAATCCAAGTGATATTACATTTTTTAAAGTTGAATTTTTTTGTTCTTCTGCTGTAACTATATCAACTATAATTAAAACAAAAAATACTGACATTCCAAGAGTTCCAAATGCTGCTGTAAATATCATATTTAAGCCCAGATCAGGTAATGAATTCTTATTAGCCATAAAGAACACATTAAGTGCTAGTCCAAGTAAAGATAATATTCCTGTTAGATTCCAAAAATATGATCTATTAAAATTCCTATATAATTCCGCTCTTATATAATTAAGCATTATGATTACCCCCTACTAGTTTAATGAAGTAGTCTTCTAGATTTGCACCCTTTTGATTAACTGAAGATACCATGATTCCGTTTTCTACAAGAGCCTTGACTACAACTTCAGGAGTATCTATATATTCATATAATCTAATTTCATTATTATTTAAAACTTCGTATTCATTACAATTAAGTTCTTTTTCTATTATAACTACTGATTTAGTTGTATCATCTACCTTTATTGATAAACACACTCTGCACTTCTCTTCTAATTCTTCTGCTGATATCTGTTCTACTATCTTCCCTTTATCAATAAATCCATATATAGTAGCTAATTGAGAAAGCTCTCCTAATATATGACTTGATATGATTATTGTAGTATTCTTCTCTCTATTAAGCTTTATTAGTAGTTCTCTTAACTCAACTATTCCAGTAGGATCAAGTCCATTTACAGGTTCGTCTAAAATAAGCAAATCTGGGTTTCCCATTATAGCAAATGCTATACCTAGTCTTTGTTTCATACCAAGAGAAAAGTTTTTAAACTTTTTGTTTCCTGCATCTTCGAGACCTGTGATTTTAATAACTTCTTCTACACAATCTTTTTCAACTATACCTTTTTGTATTCTGTAATATTCAAGGTTTTTTCTTGCGGACAAATATGGAAAAAAACTCGGTGTTTCAACCATGCTACCTGTTCTTACTCTTGATTTATTTAAGCCTTTCTCAGATGTTTCTCGGAACAGCTCAATTTCTCCATTTGTCGGTATTGTAAGCCCTGTTATCATTCTAATTAAAGTCGTCTTACCAGCACCATTCTTTCCAACAAGTCCATAAATATCTCCTTGTCTGACTTCTATATTTACGTTGTTCACAGCAAACTGACTATGGTATTTTTTAGTCAGATTCTTTGTTCTAAGTATCGTATCAGCCAT

Protein sequences of DBSCAN-SWA_2

>NC_018664|2843988:2852676|2851752_2852676_-|WP_014968838.1|DBSCAN-SWA
MADTILRTKNLTKKYHSQFAVNNVNIEVRQGDIYGLVGKNGAGKTTLIRMITGLTIPTNGEIELFRETSEKGLNKSRVRTGSMVETPSFFPYLSARKNLEYYRIQKGIVEKDCVEEVIKITGLEDAGNKKFKNFSLGMKQRLGIAFAIMGNPDLLILDEPVNGLDPTGIVELRELLIKLNREKNTTIIISSHILGELSQLATIYGFIDKGKIVEQISAEELEEKCRVCLSIKVDDTTKSVVIIEKELNCNEYEVLNNNEIRLYEYIDTPEVVVKALVENGIMVSSVNQKGANLEDYFIKLVGGNHNA
>NC_018664|2843988:2852676|2846662_2847178_-|WP_014968832.1|DBSCAN-SWA
MNMAAINYYLLHYGMIFLFILFLLEYLNAPGLSAGIIMPLSGIWVKEYGQSIILAIIVSVIGGIIGSVILYGLGRFCGKHIIDKWFYKDKKKKGYIRKKIDFLKEKGAIGVFFSMFIPGIRTIVSIPAGALKINILEYLLFLFFAVFIWNTALILSGYFLGSAVFSYLNIT
>NC_018664|2843988:2852676|2844794_2845862_-|WP_014968830.1|DBSCAN-SWA
MKEISDKKIYIIFGIIFLTLSISFILFIFLGLHSFLNISSQNIGQVNSFFVGTIIFILLLLITVISYTYIIRTQILKFSDRMCVTIDKILSQEDNIEFQVNKESLLSKLESKLKELVDLTCHQRQKIIDEQNNIKSFISDISHQIKTPIANILMYNETLIERDLSREQQQNFLHDMKLQTTKLQWLMESLIKMSRLETGLISLNKENSKLEETIAQALGSIYIKAQQKNIDITVNCDIDVEIHHDKKWISEAISNILENAVKYTQSGGLIKIEVESFEIFTRIDIEDNGIGIEENNINNIFKRFYRGKEVLDKEGVGVGLYLAREIISKQGGYIKVKSQKGIGTVFSIFLLNQLP
>NC_018664|2843988:2852676|2849566_2850082_-|WP_014968835.1|DBSCAN-SWA
MRNRIIFIAIISIFISILFNSIIKPNLGRGTHHILAESTDLSEENIEDLRLHDNIRSSKIISKYGDKMKESRDVVDYNYFNLRKGIEVAVNSEDEILRVIATDDELKTSKGIKIGNNDTDIRSAYGNDSYYRREQGMDIIGYIDKEKSCSIEFWMVDNKVELIRFDESLMK
>NC_018664|2843988:2852676|2843988_2844663_-|WP_014968829.1|DBSCAN-SWA
MSILSAKSLKKYYGQESNIVKALDGIDVSIKKGEFVAIVGTSGSGKSTLLHMLGGLDKPTEGKVIVDNNDISNMNDEELTIFRRRNIGFIFQSYNLIPILNVYENIVLPIELDGNKVDQEYINQIITTLGLKDKQTNMANNLSGGQQQRVAIARALATKPSIILADEPTGNLDGKTGQEVLGLLKITSEKFSQTIVMITHNEEIAQMADRIIRIEDGKIVGTRG
>NC_018664|2843988:2852676|2851007_2851760_-|WP_014968837.1|DBSCAN-SWA
MLNYIRAELYRNFNRSYFWNLTGILSLLGLALNVFFMANKNSLPDLGLNMIFTAAFGTLGMSVFFVLIIVDIVTAEEQKNSTLKNVISLGFPRSKLVLSKIITTVILSLISVTIILTIFFGSGIILLGLDGVTSEIVLNYLKRLLTTMTLCIGAISIGTFLAFAIKNNTAYSLVYVSIFLMTSTVIRVLSYFVSDKLMYLNNFLITKQISKLMEEEVTIKTILSANGVGIIYAIVFILLTIILFKKKEIK
>NC_018664|2843988:2852676|2847388_2848867_-|WP_041701832.1|transposase|DBSCAN-SWA
MEVSVVSSDTKSNFILTLKLKTEKFQEDILNKRLEISRQMYNSCLGELFKRYKYMKQSKEYIKVARMDKGKDRNKRFSELNKKYGLTEYSLHDFIKPMQHKFKKNIDSFTAQKIATRCFSAFQELMFHKANRVYFKRYDEMNSVEGKSNKTGIRFVNNKLEWNKLSIPVIIKKNDEYAQMALQNKVKYCRVVRKFIRGKYKFYLQLIMGGVPPIKVNKASGQAKNSIETGDVGIDIGTQTIAIASKYDVKLLELAPEINNIEKEKRVLNRRLDRQRRANNPDKYNDNGTINRGNRDKWIKSNRYVKTQNELREIQRKQADIRKQSHEKLANYILGLGNKIKVETMNFKGLQARAKETTVNEKTGRVNKKKRFGKSLANKAPAMLLTILDNKLKWNDEVLIGVNTYKVRASQYSHIEDKYTKKTLRDRWNDFSSYKIQRDMYSAFLIMNVKDDLKEIDRDLCFRRFENFRKLHDKEIERIKNSENKLISSMGL
>NC_018664|2843988:2852676|2850078_2850984_-|WP_014968836.1|DBSCAN-SWA
MENLIIIFLIGALAIFVAFYFLQQREIKSISNQLEKINESRTNSKLLISMPNKELEKLALEINKFLEKKQKIEAKYKKMDLELRQAIVNISHDLRTPLTSIKGYIQLIEDSTLSSDEKSQYISIVKKRTESLEVLISNFYELSRLEANEYKFSLKSINISNMLCDVMAAFYNEFQDKGIDPAIKIDEKVPSIIGDENAVRRVIANLIQNMIKYGDKIIDISLEQHKDVIIMDFTNDTVGLINKEDVSHIFDRSFTVDRTRSGQSTGIGLAITKQLVEQMGHKIYVELIDNKISIKIEWRYL
>NC_018664|2843988:2852676|2845872_2846547_-|WP_014968831.1|DBSCAN-SWA
MVKILVVEDDDTLNNGVSFNLQADNFEVISAHSINEAIEVLSKTPIDLAILDVNLPDGSGFDLCKSIRETNDIGIIFLSACDMEFDVVTGFKLGADDYITKPFSLSILRERVLAVLRRYKKNTESLNTIIIDNLKIDFDKMTVFKNNEDIILTPTEYKLLNALIKSRGQVLTRKSLLEALWDKDCNFVDEHALTVNINRLRNKIEDDPAKPKYIKTVYGIGYIW
>NC_018664|2843988:2852676|2848868_2849267_-|WP_014968834.1|transposase|DBSCAN-SWA
MKNYRMTQTTVSLINYHFVFCPRYRRKIFDIQNVEIRFKEIFKDICDKLEVEIIAIECDRDHTHMFLNCLPSLSPADIMQKIKGVSSKLIREEFVELSKMPSLWTRSYFVSTAGSVSSENIKKYVEEQKTRY

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014968829.1|2843988_2844663_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-32	37.6
WP_014968830.1|2844794_2845862_-	HAMP domain-containing histidine kinase	A0A1B0VMK3	Pseudomonas_phage	4.3e-07	23.1
WP_014968831.1|2845872_2846547_-	response regulator transcription factor	NA	NA	NA	NA
WP_014968832.1|2846662_2847178_-	VTT domain-containing protein	NA	NA	NA	NA
WP_041701832.1|2847388_2848867_-|transposase	transposase	A0A0H3UZK2	Geobacillus_virus	7.4e-167	61.8
WP_014968834.1|2848868_2849267_-|transposase	IS200/IS605 family transposase	Q332K6	Clostridium_botulinum_C_phage	1.2e-55	78.3
WP_014968835.1|2849566_2850082_-	hypothetical protein	NA	NA	NA	NA
WP_014968836.1|2850078_2850984_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.9e-17	26.4
WP_014968837.1|2851007_2851760_-	ABC transporter permease	NA	NA	NA	NA
WP_014968838.1|2851752_2852676_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-39	45.0