CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018676	Candidatus Portiera aleyrodidarum BT-QVLC, complete sequence	5 crisprs	NA	1	2	0	0

Cas Category Instructions

Results visualization

1. NC_018676

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CRISPR-Cas detection and classification

Crispr_ID: NC_018676_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018676_1

126934-127013

Orphan

Consensus_repeat	Method
TAAGCTCTAATAGATAAAACATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018676_1

>merge|NC_018676|1|126934-127013|CRISPRCasFinder
TAAGCTCTAAGCTCTAATAGATAAAACATCACCTCTTAAATCTTAAAAGCAACCTTTAACCTCTACTAACTAACAAATAA

>NC_018676|1|1|126934-127013|CRISPRCasFinder
TAAGCTCTAAGCTCTAATAGATAA	AACATCACCTCTTAAATCTTAAAAGCAACCTT
TAACCTCTACTAACTAACAAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_018676.1\|WP_014943237.1\|108825_111672_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NC_018676.1\|WP_014895025.1\|115345_116188_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NC_018676.1\|WP_080587198.1\|131888_133079_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NC_018676.1\|WP_014895027.1\|116433_116583_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NC_018676.1\|WP_148267228.1\|135566_135872_+\|hypothetical-protein	unknown	unknown	unknown
NC_018676.1\|WP_014895019.1\|108570_108810_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NC_018676.1\|WP_014895026.1\|116201_116417_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NC_018676.1\|WP_014895035.1\|136687_136927_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_018676.1\|WP_014943240.1\|127727_129161_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_018676.1\|WP_040966667.1\|136376_136679_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NC_018676.1\|WP_014895037.1\|137360_138719_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_018676.1\|WP_014943238.1\|113216_114707_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_018676.1\|WP_014895017.1\|107340_107607_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NC_018676.1\|WP_014895024.1\|114671_115286_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NC_018676.1\|WP_014975146.1\|129191_131840_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NC_018676.1\|WP_014943243.1\|133099_134518_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NC_018676.1\|WP_014895018.1\|107594_108578_+\|Obg-family-GTPase-CgtA	unknown	unknown	gnl\|CDD\|237047
NC_018676.1\|WP_148267227.1\|112244_113216_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_018676.1\|WP_014895038.1\|139466_140489_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NC_018676.1\|WP_014943245.1\|136932_137364_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659

Protein	Function_ID	Function_description	E-value
NC_018676.1\|WP_014943237.1\|108825_111672_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_018676.1\|WP_014895025.1\|115345_116188_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	3.34233e-151
NC_018676.1\|WP_080587198.1\|131888_133079_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	4.28192e-177
NC_018676.1\|WP_014895027.1\|116433_116583_+\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	5.78612e-11
NC_018676.1\|WP_014895019.1\|108570_108810_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	4.29732e-11
NC_018676.1\|WP_014895026.1\|116201_116417_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.90492e-27
NC_018676.1\|WP_014895035.1\|136687_136927_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.69052e-30
NC_018676.1\|WP_014943240.1\|127727_129161_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_018676.1\|WP_040966667.1\|136376_136679_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	9.71395e-16
NC_018676.1\|WP_014895037.1\|137360_138719_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_018676.1\|WP_014943238.1\|113216_114707_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_018676.1\|WP_014895017.1\|107340_107607_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	4.02279e-42
NC_018676.1\|WP_014895024.1\|114671_115286_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	1.57193e-46
NC_018676.1\|WP_014975146.1\|129191_131840_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NC_018676.1\|WP_014943243.1\|133099_134518_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NC_018676.1\|WP_014895018.1\|107594_108578_+\|Obg-family-GTPase-CgtA	gnl\|CDD\|237047	PRK12298, obgE, GTPase CgtA; Reviewed.	2.39888e-105
NC_018676.1\|WP_148267227.1\|112244_113216_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	4.1326e-149
NC_018676.1\|WP_014895038.1\|139466_140489_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	3.97475e-129
NC_018676.1\|WP_014943245.1\|136932_137364_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	8.16347e-25

>NC_018676.1|WP_014895027.1|116433_116583_+|50S-ribosomal-protein-L33
MRKKIKLVSTKGTGHCYSTYKNKRENKKKLNLKKYDPIIRRHVNYRESK
>NC_018676.1|WP_014895026.1|116201_116417_+|50S-ribosomal-protein-L28
MTKRCQITYKKPMQGNNVSHSHRKTRRRFMPNLQKHRFWIKKEKRYIKMHITTKGMRIIDKYGIEKVLIKT
>NC_018676.1|WP_014895025.1|115345_116188_+|RNA-polymerase-sigma-factor-RpoH
MIQNYPETNIEGYIKTVLGFPIISAQDEYDLARRLRNKGDLDAARCLVISNLRFVIHIARSYSGYGLQNSDIIQEGNVGLMKAVKRFDPAHGVRLVSFAIHWIKAEIHEYVLRNWRIVKIATTKSQRKLFFSLRCAKTSLNWLNREEIKSIAKDLNVKPTVVREMECRLSSTDYGFDNKQKEEKNNYKNPSNYLEDSRFDPALQFENFDFERYSYRRLYVALNKLDERVRDILKQRWLNEQKATLHELADIYGVSAERIRQLEQRAIKKIKNYINISTYI
>NC_018676.1|WP_014895024.1|114671_115286_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MINYFNVIRLIGGCKKRSILNLPYTNLHGGRCVRPTLINVREIFFDLIKNDITNKTIFDLYAGSGSLGFEAISRGAKYVLFLETNKSFVKNLYLNKKKLKFCKSVRIIKTNSIKHINKVASNSFDIIFIDPPFCRGLAYPSINLLELNGWLNDKALIYLEVESKLDLFLLPNTWTLYKELTLGNYHILLYRRFLNFTATQQRKK
>NC_018676.1|WP_014943238.1|113216_114707_+|lysine--tRNA-ligase
MIIKNYLIKDRLNKLQVLSKTANKAGKSAFYNKFRRTSLAKSLKKIFGEKNKKQLVNLKLTTAVAGRIMRKRGPFIVVQDVSSNIQLYIDKKTISNEIHKYIKDWDIGDIIGAIGDIDKSKIGELYLLVKKAYILTKSIRPLPSKFHGIKDQEIRYRHRYLDFIMNKEVRKSFKIRTRIISALRKFFYELYFLEAETPILHSMPGGAIAKPFETYNYSLNIKLYLRIAPELYLKRLVVGGFERVFEINKNFRNEGLSTWHNPEFTMLEFYWAFATYKDLMEITEHMIRFVANEALGTTIINIGNILNIDLSEPFDCLSMRDSLIKYGKTFSINNSDFYDLESLLFLSKRIGLTVANYNNYGNLLNKLFEVIVERKLIKPTFVTDYPVEVSPLARSKDSNLNITERFELFIGGREIANGFSELNDYIEQSNRFYLQLRNKYTYDLSNFDMDYIRALEYGMPPTAGEGVGIDRLVMILTNKDSIRDVLLFPLLRSRKV
>NC_018676.1|WP_148267227.1|112244_113216_+|peptide-chain-release-factor-2
MKYKNYTLGFIEIRNIFDEGHENKKAIKNVENGIYNNAELLHLAITELDSKPLSFIKQDIFFFEKELAKLDAVRLFSGDFDKNNAYVEIKAGSGGVESQDWANMLVRMYSRWAVTHDFKTETVNLNIGELLGVKSATLHIKGDYAFGWMRTEKGIHRLVRKSPFDSSKRRHTSFTSVFVYPEITSKVHNIKINTNELRIDTYRSSGAGGQHVNTTDSAVRITHLPTKIVVECQSERSQHSNKERALTLLKTKLYDFDKKKGEVERINIEKKKAGICWGNQIRSYVLDAQRIKDLRTGVKNNNCEKVLNGELDLFIEASIKQGL
>NC_018676.1|WP_014943237.1|108825_111672_+|isoleucine--tRNA-ligase
MINVRYNNTLNLPKTTFPMRGNLSIKEPIRLNKWKQSEIYKKLRQDRKGCKKFILHDGPPYANGHIHIGHAVNKILKDIIIKSKNLEGCDSWYVPGWDCHGLPIELNILKNNNGKFLTSNKIMLYCRKYVEKQIYSQKVDFIRLGILGDWDNAYRTMDFINQAGIIRSLSAIVKKGYVFRGFKPVNWCFQCSSALAESEVDFLEKVSESIDVAFFCIDNYKLVKNFGVNNCIEKPIEVVSWTTTPWSIPANQAIHVLAFCIYVLVDVGVKFILLAEQLVENCLNRYQLNGKIIAKTFGKELEKVRLKHPLHNIDAFYDRITNIYIADYIAIKTGTGIIHASPAYGEDDFIVYSNLQYNENMLKLVKSNGFYIKYLSVFGGQLIWIANSEIINNLNNRIIAKELILHSYMYCWRHKNPLIKMATSQWFVGMDVGKISLRKKALDCLKNVKVYPSSGKTRLYHMISNRPDWCISRQRSWGVPIPFFIKKKRCLLHQRIIEIMEIIAKKVQNEGSEVWIKIKSCEVFGDEDIVYKKITDILDVWFDSGTTHNHVLRGSNFILQKEDKADLYLEGLDQYRGWFHTSLITSAAISGHAPFNKLLSHCFTVDKNGQKMSKSIGNVVSPQTIISKYGADILRLWVVSKDYESEMTMSEDIIQLIADSYRRLRNTTRFMIANLSGFDQSKHGIDPEKLLALDRWALDISANFQHAIKNSYKDYRFVDIYQQLCNFCTRDLGSFYLDIIKDRQYTTQKNSLYRRSCQTTLYHIIEAMSRWITPICTFTAEEIYESLSVKRYNKSVLLETYYRELNPLPKGLVMGRVFWKIIKAVKSEVNKCLENYRKKNIIKSSLDAKVTLYVSETYYKILSLLKGELRFVLITSSAFLKKSVNKTKTAIFTGLSGLQVLVQKSKYKKCERSWELLPDVGRYNKHPKLCARSIDNLPRGPGEVRLYV
>NC_018676.1|WP_014895019.1|108570_108810_+|30S-ribosomal-protein-S20
MDKNRARRQQNSSKRSIVRTYIKRVLKAIKLKKFKLCIEEFYKAQSVFDILADKNIISKRKSARIKSRLNLQIKKELQC
>NC_018676.1|WP_014895018.1|107594_108578_+|Obg-family-GTPase-CgtA
MQFIDETYILIEAGTGGTGCLSFSSLLRGSDGGNGGTGGNIFCIGDKYLNTLFFLNYNKVYKAQNGEIGKPKKQNGNKGKDVFIKVPVGSMLRDAQTCELIGEIIIHRQNIKVAKGGTSGIGNFKTKRSKNMKGTIGESRNLYIELILLADVGCLGIPNSGKSTLIRSITSALPKVARYPFTTLRPFLGFVKLNKTYSFIITDVPGLIIGASQGLGLGLKFIKHLNRIKIICNLLDVMCNKVLDTTLGIISEIKTIYIDMFQKQRYLVLNKLDKLPKYKKSQVIEIVINGLTWRNKTTLFIISAKKKYGCYELKKSALTYLKRGING
>NC_018676.1|WP_014895017.1|107340_107607_+|50S-ribosomal-protein-L27
MAQKKAAGSSRNGRDSNSKRLGIKIYGGQYVISGNIIVRQRGTKVLAGHGVGIGRDHTLFALINGCIFFYNIKKGNRKRKCVKIVCSL
>NC_018676.1|WP_014943240.1|127727_129161_+|glutamate--tRNA-ligase
MKKIRTRIAPSPTGTPHIGTAYISLLNYYFARINNGKVILRIEDTDSKRSKSKFENKILELLHWLGIQWHEGPDIGGKFGPYRQSERNNIYNKYVEKLIKVGKVFKCYRTSEELEKLRKCKVDKTLKEKDLQLDYKELKFRKKHNWPYVIRLKVPNKGKCVFYDVLRGSITMNWDQIDSQVLIKSDGTPTYHLANVVDDYLMGITNVIRGEEWITSTPKHKLLYDYFGWKQPEFCHLPLLRNPDKSKLSKRKQNNSIEFYRKMGYLPQTIINYLGSLGGVKTTKWYRKNTNMKTKVDIKSISLGGPIFDLDKLSWLNGIYIRSMKNETLIQVMYEWAKDYIHKILPTIKPRIKILTDIIHLSEQVFYGLPKLKKEDFKVIALKKKLQIKVLKHLWLQLEYIEKWDKQNILYKVKQVSNQLQMKMKTIIAPIFIAINGRLISTSVINTIVILGKDITRIRIKQAIKLIGGITLKHENK
>NC_018676.1|WP_014975146.1|129191_131840_+|2-oxoglutarate-dehydrogenase-E1-component
MKIALDNVSYLEELYEQYKNKGNVTEEWRQIFDYITKQECRFKTIKTCEKNTIKQMSVLKLITNYRYMGHKKAHINPISGKNKVKAIQLSLHKLNIKDLNKAFNNGVGQNKSKLKEIIDVLDKTYCSSIGCEFRHILNNVEIFWLEQSFESVLNKYSQKKNISLHILGLITAAEALEAYLSSNFPGTKRFGIEGGETLIAMLYETIQRAGNYGIKEIFMGMAHRGRINVLVNILRKSPADIIKEFEGKQIYEAYSGDVKYHQGLSSNIKTKGGDVKLNLAFNPSHLEIVYPVIEGAVRARQDYMNDKTKVLPVVVHGDTAFAGQGVVMETLQISKIKEYNTGGTLHILINNQIGFTTYKHNARSTKYCSDIAKMFNYPVLHVNGDDPEAVQYVTQIAVDYRNKFKKDMVIDMICYRRRGHNEADEPSITQPIMYKKIKNNPTTRELYSKHLLKQGLISKSDVKQMVSLYRHKLNYDSNNKAYKKTTGSMYKFHEEDLNDTSFSMKRMRELAVKLCDLGELKVQSKVAKIYSNRRKLVSSNSIKINWGFAELLSYASLLDEGYGIRITGQDTGRGTFSHRLAVIHNQKDGARWTPLQHIKKGQHKFTIVDSSLSEEAALAFEYGYSTTSKNMFVAWEAQFGDFANGAQVVIDQFISSGENKWGSLCSLTLLLPHGYEGQGPEHSSARIERFIQLCAEQNMQVCVPTTPSQVFHLIRSQAKRKNRKPLILMQPKSLLRHKYARSSFEDLSNGRFKTVIGETEKIKPDIVKRVILTSGKVYYDLVAYRKEKNIYETAILRIEQIYPFPEKSIIKKISIYSKCEHIIWCQEEPKNQGAWYQIKYFLNKKLKIRLKFVGRTSASAPASGYFDAHLKQQANLIKEAFF
>NC_018676.1|WP_080587198.1|131888_133079_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MKAPRFPESVNEGTVATWHKKPGDKISPYELIVEVETDKVLLEVVSPTEGFLQIIKIPVGKKCKSEQLLGIIVAQKEEGFYSSGSSSTNIKQQKLCKKEQKVDESEKQELKQFYKQAIELEESYSPEVRKAKTSIDVENLFENGTVQDKRVNIRKENVKYSINEIGVKRVQLSRLRQTITKRIVKAQKNAAMLTTYNEVDMGNILEIRTKYRELFEKKHGTKLGLMGFFVKACTVALKQFKKVNAVIDDKEIVYHNYQDIGIAVSTNRGLVVPILRHTDSIKIEEIEKKIMDFRKRGVDGKLSIKELTGGTFTISNGGVFGSLFSTPIINPPQTAILGMHKIQNRPVVLKGEIVIRPMMYLALSYDHRLIDGKDAVNFLFFVKELLEQPIRFILNI
>NC_018676.1|WP_014943243.1|133099_134518_+|dihydrolipoyl-dehydrogenase
MVSLFDVIVIGSGPAGYVAAIRSAQLGLKTACVEQWMNNGRVVYGGTCLNVGCIPSKTLLEISHKFIDAKANFEKIGINFENISINVKKMIRHKNKIVYSLNDGIAALFKANGVVVLRGSGKILTKKTVEVLHKGKLCNFQAKNIIIASGSIPRCLNQVPFNGDTIIDSAAALNLQEVPNRLGIIGAGIIGIELGSVWSRLGSKVTIFESLDKLLPVIDFSLSKQISQILKKQGLNIKFNVRIIGSEIVNNEVKVRFIDHFGEHCLTFDKLIVCIGRMPFTQSLIDKESGLVIATNGFIKVDRQCKTNLSGIYAVGDVVRGPMLAHKAAQEGIMVAELIAGNQVQLNYDTIPGVIYTSPEVAWVGKNEQQLISYGIKNYKIGIFPFANCGRARTSNEIQGLVKIITDVNDIILGVHIIGHNASELIAQGVIAMEFSSSAEDLALTCFAHPTLSEAIHEAACTASLGNTIHNI
>NC_018676.1|WP_148267228.1|135566_135872_+|hypothetical-protein
MLGDVVMCCSCVFDDLCKCVVVVYGVRVLKRLLVCVVVLKESKRLLVCVVVLKKQVRSCKKKEGKGKNWQLAVGSWGWGWGWGFVVVCCRCDMYKMLDVRC
>NC_018676.1|WP_040966667.1|136376_136679_+|30S-ribosomal-protein-S6
MNYEINILLNVNNDNLTSENIKKLIKIIIENNGRITKLEDLGNLNLYYLIKKQKQANIILINIDCEKYVIKKLEKRLKYNEVIIRYIIIKKSKAKIKVNK
>NC_018676.1|WP_014895035.1|136687_136927_+|30S-ribosomal-protein-S18
MLFRKKKYCRFTAEKVKEIDYKKNDILKLYIAENGKIIPSRITGTKVRYQRKLTKAIKKARYFGLLPYTDKNYNKNGGC
>NC_018676.1|WP_014943245.1|136932_137364_+|50S-ribosomal-protein-L9
MNVILISKNSNSGKKGTIVSVNKGYARNFLIRKGFAIIAKKKNIEYLKQMRKHYLKEYKLYIYKIKTKLKNVKIEIFCKSGQTGKIVGSIGRRYLSKVFYEKYEIKINKKHITIKKNIIKKFGEYKISLYEQINIKINIQKYK
>NC_018676.1|WP_014895037.1|137360_138719_+|replicative-DNA-helicase
MKKIINDKKQTKTPPHSVEAEKALLGGVMLDNAAWKKISEIIKNEDFYSIEHKYIFDAITHIAEKNNKVDMVTVAESLETNNKLQKIGGISYLTELSRNTHSIHNIVAYADIVRECSNLRNLIRISKKIAEEAFNRNGKKVQDIIHKAEKLILTMAESRYRVKKTNLLNLNELLNKTINSINKMYSTKSSMTGLLTGFNELDNMTSGFQKADLIIIAGRPSMGKTSFAMNIVEYIIKTNKSDPVIIFSMEMPAEQLILRLLSSVGRIDQTNIRKGNIGEEDWLKLTESLKKIKNCKLYIDDTPMITPIDIRKTIKKCIRDTGKISLIMIDYLQLMHVSSSFISYNRTAEISEISRSLKSIAKEFNCPILAVSQLNRSLEQRNNKRPIISDLRESGAIEQDADLILFIYRDEVYNSDCLDNKGIAELIIGKQRNGPIGVINIRFTGKYTKFEN
>NC_018676.1|WP_014895038.1|139466_140489_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MIILGIETSCDDTCIAIYDTKSGLITTKKYTQTIHTIFGGVIPKFSSFYHLNKIIPIIKSLFFKFQIHTTNINAIAYTAGPGLYQSLLIGAYIAYSISYTLKLPILGINHLEGHIFSAMINKKKPDFPFICLLISGGNTQLIDVQNIGHYKILGESKDVSLGETFDKIAKVLKLYYPGGVRLSHLACFGKIKKQNFPKILRNNITFSFSGLKTYILNYLKQFKYTNKYQYKANLAKSFEEYVLNMLSYKCYKALIYYGRSCLLISGGVSANKTLRKHFNLFFKNKLNNFQITFPDQVLCTDNAAMIAYVGALRLTSGEKITNKLLIRPTWCLEELKYPLF

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Crispr_ID: NC_018676_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018676_2

187122-187356

Orphan

Consensus_repeat	Method
AAAAAAGGTTTGTTAAAGAATAGA	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_018676_2

>merge|NC_018676|2|187122-187356|CRISPRCasFinder
AAAGAAGGGTTGTTAAACTTTTAATGCTGTATGGTAAAGTTAAGAAGTGGTTGTTAATAAAAAAAAGGTTTGTTAAAGAATAGAAATTAATTAAAAAAAAGGTTTGTTAAAGAATAGAAATTGATTTTAAAAAAGGTTTGTTAAAGAAAGAGGAGTTGTATGGAAGAGGAAAAGGTTTGTTAAAGTAAAGAAGTTAAGGTAGTTGTAAAAAAAAATAGGTATTTTATAGTGTAGT

>NC_018676|2|2|187122-187356|CRISPRCasFinder
AAAGAAGGGTTGTTAAACTTTTAA	TGCTGTATGGTAAAGTTAAGAAGTGGTTGTTAATAA
AAAAAAGGTTTGTTAAAGAATAGA	AATTAATTAAAAAAAAGGTTTGTTAAAGAATAGAAATTGATTTT
AAAAAAGGTTTGTTAAAGAAAGAG	GAGTTGTATGGAAGA
GGAAAAGGTTTGTTAAAGTAAAGA	AGTTAAGGTAGTTGTAAAAA
AAAATAGGTATTTTATAGTGTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_018676.1\|WP_014895073.1\|194006_194210_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NC_018676.1\|WP_014895058.1\|169470_170550_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|223155
NC_018676.1\|WP_014895063.1\|177652_178741_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NC_018676.1\|WP_014943256.1\|194865_196167_+\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NC_018676.1\|WP_014895066.1\|187655_187889_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NC_018676.1\|WP_014895064.1\|183469_183691_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_018676.1\|WP_014943255.1\|194320_194845_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_018676.1\|WP_014943250.1\|168145_169465_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|237820
NC_018676.1\|WP_014943254.1\|193485_194007_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NC_018676.1\|WP_014943251.1\|173628_176043_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_018676.1\|WP_014895056.1\|166492_168037_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NC_018676.1\|WP_040966668.1\|170533_173080_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NC_018676.1\|WP_014895070.1\|190767_192390_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|283599
NC_018676.1\|WP_014895069.1\|189126_190761_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|236766
NC_018676.1\|WP_014895068.1\|188081_189026_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|182909
NC_018676.1\|WP_014975162.1\|192398_193499_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NC_018676.1\|WP_014895065.1\|183739_185407_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NC_018676.1\|WP_014895067.1\|187906_188071_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_018676.1\|WP_014943252.1\|176250_177651_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NC_018676.1\|WP_014895055.1\|162560_163436_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107

Protein	Function_ID	Function_description	E-value
NC_018676.1\|WP_014895073.1\|194006_194210_-\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	2.33075e-29
NC_018676.1\|WP_014895058.1\|169470_170550_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	2.97292e-92
NC_018676.1\|WP_014895063.1\|177652_178741_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NC_018676.1\|WP_014943256.1\|194865_196167_+\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_018676.1\|WP_014895066.1\|187655_187889_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.9027e-20
NC_018676.1\|WP_014895064.1\|183469_183691_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.35464e-34
NC_018676.1\|WP_014943255.1\|194320_194845_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.37026e-115
NC_018676.1\|WP_014943250.1\|168145_169465_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|237820	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_018676.1\|WP_014943254.1\|193485_194007_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	1.41534e-57
NC_018676.1\|WP_014943251.1\|173628_176043_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_018676.1\|WP_014895056.1\|166492_168037_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_018676.1\|WP_040966668.1\|170533_173080_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NC_018676.1\|WP_014895070.1\|190767_192390_-\|MFS-transporter	gnl\|CDD\|283599	pfam05977, MFS_3, Transmembrane secretion effector. This is a family of transport proteins. Members of this family include a protein responsible for the secretion of the ferric chelator, enterobactin, and a protein involved in antibiotic resistance.	1.05741e-169
NC_018676.1\|WP_014895069.1\|189126_190761_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
NC_018676.1\|WP_014895068.1\|188081_189026_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	4.5031e-77
NC_018676.1\|WP_014975162.1\|192398_193499_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	2.28258e-152
NC_018676.1\|WP_014895065.1\|183739_185407_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NC_018676.1\|WP_014895067.1\|187906_188071_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	1.14946e-15
NC_018676.1\|WP_014943252.1\|176250_177651_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NC_018676.1\|WP_014895055.1\|162560_163436_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.515e-151

>NC_018676.1|WP_014895065.1|183739_185407_-|2-isopropylmalate-synthase
MKFKFNNKKYCYFDEFPKLKNRDWIDKKISKTPILVSEDLRDGNQSLIEPMTVETKKTMWTLLINIGLKEVMVGFPSASKADFDFVRWLIRNKQIPEDVTIAVLVQARKPLIKRTFESLVGIKKSIIHFYNSTSPIQRDRVFKAQKEAIIAIAAKGAKYILHQTKKYKNVNWIIEYTPESFSNTEIDFTLTICETVLDILSQKNIYKVILNLPTTVDLTSPHVYADQIEYFCKNISKRDKIIISVHTHNDRGSAITSSEVAVLAGAQRIECTLLGNGERTGNLDLIAFAMNLYSQGIDPNIDLHCPEEIIDIVKLCTKLPIHPRHPWVGKLVYTAFSGSHQDAIRKSIKKQKQKEIWQVAYLPIDPKDIGRSYKSVIRLNSQSGKSGFAFLLERDYKIKLPRWIRNYLAPLVQNESERNMFELSSCELYSILKNNCFLETPFCLLNYYIYKNSLQICFNNKLIDNKVTYNMYFSILECKKILLAFIEMWTLHKLTLIKYYIQKINKYYIALIRINLHKHLLIGTAIDFDIISVCLKSILSAINKNFMDCRANKIT
>NC_018676.1|WP_014895064.1|183469_183691_+|cold-shock-protein
MATGTVKWFNDTKGYGFISPDDCGGDLFAHFSEIQDDGFKSLQDGQKVTFEVTQGKKGLQAASIKVIKNKKCT
>NC_018676.1|WP_014895063.1|177652_178741_-|chorismate-synthase
MSGNTFGKLFTVTTFGESHGFALGAIIDGCPPGIEISEKYIQKQLNRRKPGSSKYTTQRREPDKVKILSGLLKGITTGTPIGLLIENIDQRSKDYKTIKKQFRPSHADYTYYQKYGIRDYRGGGRSSARETVMRVASGAIAKKYLSKLNVFIRGYISQIGSIKLPFVTWKIVYTNPFFCADPNKINYLEKYMKKLQREEDSIGAKLTLIAYGVPIGLGEPVFDKLDAELAHALMSINAVKGIEIGSGFLSVNQRGSEHRDEIKNKKIISNNSGGILGGISNGQSLVLNLSLKPTSSITIPGNTIDMYGNSIKVITKGRHDPCVGLRAIPIAEAMVALTLMDHFLRNRAQNIDVNVKNKIGVN
>NC_018676.1|WP_014943252.1|176250_177651_-|3-isopropylmalate-dehydratase-large-subunit
MTGQTLYEKIWSAHLIKSREDGTALIYIDRHLLHEVTSPQAFDGLRLNKRKIWRVDTNIATVDHNVPTNVEERIHGIKDELSRIQINLLKKNCKDFLINKFFNIKDVRQGIVHVIGPEIGATLPGMTVVCGDSHTSTHGAFAALAYGIGTSEVEHVLATQCLLQRKLKNMKVCINGELSVKVTAKDLILSIINIISTDGGTGYAVEFTGSTIKTLSMEGRMTICNMAIEAGAKVGLISVDQNASNYLHGRALVPNIIWNKAIIKWKNLFSDYDAKFDEYIKINAKNIEPQVSWGTQPDMVVGVNGKIPNPKDYPKPDRKNIELAIKYMGLKSEQKIVDIKIDRIFIGSCTNSRIEDLRIAANFLKNNHIAATIKEAIVVPGSGYVKKQAELEGLDEVFISAGFEWREPGCSMCLAMNSDKLDLGDRCASTSNRNYESRQGYGGRTHLVSPAMAAAASIAGHLIDVR
>NC_018676.1|WP_014943251.1|173628_176043_-|preprotein-translocase-subunit-SecA
MLISTLVLKKNDREIKRICNIVYIINDLENHFVSIDNSLLRYKTLEYRKRIIKGDLLDMLLPEAFCTIREASKRILGIRHFDVQIIGGIVLHKGLVAEMKTGEGKTFVGTLPTYLNALPGHGVHVITTNEYLSKRDSKNLRPLYEFLGLSRKTIYAEQILQEKISAYKADITFGTNNDYGFDYLRNNLAYEIKEKFQRKLNFALLDEIDSILIDESRTPLIISGQLDSGTQIYYLIKNIAEKLIINKKNIYKHQQCDFVLDEKQKQVYLTEQGHKYIEFILKSKQIIKSSDSLYSVNNIDFVKKIKAALLALYLFKKNVDYLIINKEIIIVDENTGRVIPGKRWSDGLHQAIEAKEGVKIKQDGNVLAYITLQYFFRLYSKITGMTGTALTEAYEFKKVYKLDVLVIPTNKPIIRKDMNDLIFFSFKEKFEAIVKDIKNKLYKGRPLVVGTTSISFSEYLSCILNFHKISHNVLNANNHSYEANILSKAGRYSTITIATKMAGRGTDITLGGTKQNIFNKHLVKLSGGLHVIGTEHHESRRIDNQFKGRAGRQGEPGSNRFFVALEDTLMRVVCSNRLKKMIQILGLAYGESISHKIVNKALEQAQNNIESHKFAIRKQLLKYEKISSYHRKIVYHQRDAILFNQNFAEYITTTIKEVICKIICDYKNNSNIDKFEDNIKTILNLNIYKWIKKNKYMLSSDTGYIFVKKKLKDKYTTNYIYNCKKFGKQRIKLFEKNTILQIIDIKWKEHLQNMDYIMNSIHLRYYIQKKPIEEYQKEALSLFKAFNINLKVFIISIISQYKNV
>NC_018676.1|WP_040966668.1|170533_173080_-|DNA-gyrase-subunit-A
MLEKYKKFLSIEDEVKQSYLDYALSVIIGRAIPDIRDGLKPVHRRVVFAMHELKNTCNKKHLKSARVVGDVIGKYHPHGDSAVYDAIVRMSQAFSMRYVLIDGQGNFGSIDGDNAAAMRYTEVRLSRITSEFLYDLENDTVNWVDNYDGTEKIPEVLPSRIPNLLLNGTSGIAVGMATNVPPHNIKEVINACLAFIEDKNISIEQLMTYIKGPDFPTSGIIYGTAGIVEAYKTGKGSLNIRAKHIIKKNKLNGTEKLIFTEIPYHVNKARLIEKIVELVKTKKISGIKELRDESDKDGLRVVVEINRYESSKFILNNILAHTQMEVIYSVNMVAVEKGKPKTFNLKEIIEAFINQRQEVLKRRTLYKLKQITKQKQIIEGLIIASSNIDSVIEIIKSASSFKDAKTKLQNVKWKKLKLFNTYFIDSSLLTEFQLKAIMDLRLYRLTSLESKFVLDDYKTTLKKITKLKKILSSFDYFMDWIRKELIEISYKYGDKRKTKITAIQKKISTVDIINEEQIVVTVSKAGFAKIQKNSVYQTQKRGGRGKLITITEKDEDVIEHLLFASNHDTILLFSDKGKVYWLNLYDIHNISRYARGRHLGKLLCLDVNEKITAILAINDEIQKTNNYIFFATALGKVKRTHIKRFNRQRNCGIIALILERGDSLICAAITYGQDNLIMLLDSNGKSIFFKQSEVRTMGRKAMGVLGMRLFSNNKVISLIVINNNKDSHIYYILTVSENGYVKRRKIEAFHLMNRGGHCIIAKCYNNRYGNLVSAIKVKDTDEIILITNRGKLIRTTVKEISCRSRIAQGLTFIRVNNDKFISFTNNRKVYSYKENKTKDKVLKNEQKI
>NC_018676.1|WP_014895058.1|169470_170550_-|bifunctional-chorismate-mutase/prephenate-dehydratase
MNKKFKPYIKYIGNIDYQILKLISHRAKLVSQIQLADDKQNCSYNNGHEDRYFYSIKTSNKGPLSNKVLSKIFKSIVSACLKFKKKSQVAYLGPEGTFTQQAVLKYFGKSIKSIPVKDVFRTIENKIYNYGVVPVENSTEGIVNNTFDSFISSNLKICGEIILSIHHHLLIDKQNINKNIDKIYSHQQSFSQCRDWLKNNYPNAKKIAVASNAEASNLTQYKKNSAAIAGDLAASYYSLIKLAKNIEDRINNYTRFLILSDKDVAPTGYDKTYLMIYINNQIGSFYLLIEPFYRYNINILRLTTRPAPENKGVWNYIIFLEIKGHRKSKLVEKTLEEIYLRGAELKILGSFPEQLTKRI
>NC_018676.1|WP_014943250.1|168145_169465_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKNKVKYIVQRAIKPIKGIIIVPGDKSISHRALMFGSLATGLTKITGFLDGYDSLSTLQSFREMGVEIYGPKQNILCISGAGIYGLKNPKKNIYLGNSGTSMRLLTGLLAGQKFDTKLTGDLSLNKRPMNRVEIPLRLMGAKIKTDKYGVPPVKILGNRLTGINYIMPIASAQVKSCLLLAGIYAKGETKIIEPGCTRDHTERMLKSFGYKIKQKENTISLVGGSKLKASKIKIPADISSAAFFLVAASIIPNSDLLLKKVGINPTRIGVINILRKMGADINLLNEKIYCNEPVADINIKYAKLKGIDIPLNQVPLAIDELPILLVAAANAEGITRLRGASELRVKECDRISAMAKGFKTIGVKTSVYEDGIDIFGTKVYKGGCINSYGDHRIAMSFTIAALKATDVIVIDDCTNVSTSFPNFNLLLTTLGINIKEVKY
>NC_018676.1|WP_014895056.1|166492_168037_-|30S-ribosomal-protein-S1
MSESFAELFEKSLNKINLKPGSIIKAKIVYIDKDWIKVNAGLKSEVKINIDQFKNDKDDVFLKIGDRINVVIETLEDGFGETRLSREKANRLEKWKNLEKAFNNNEVVKGIILGKVKGGFTVDINSIRAFLPGSLVDIRTIRDTLHIEKKYIDFKLIKIDKKRKNIVVSRRAVLEIGNDILKQNISSDQFISKSIKGIVKNITDYGAFIDLGGMDGLLHITDMAWKRVKHPSEIVSLGDEIEVKILRIDIDRNRVSLGLKQLSDDPWKKVKTCYPVGIKVKACITNITEYGCFAEIEDGIEGLVHVSELDWTNKNINPSKLVSIGERVEVMILEIDELRRRISLGIKQCRLNPWENFSLKYKKNDRVNGIVKSITDFGIFVGLNGGIDGLVHVSDISWKDLDEKSIRKNYRKGDTIETRILSIDPERERISLSIKHLKQDPILSFFNYKGSLLNGTIISITDFNSEFDTFVKFFTLFVTKSHYYHLKYKLNDRIECYINSIDQKYRHITMFEVC
>NC_018676.1|WP_014895055.1|162560_163436_-|4-hydroxy-tetrahydrodipicolinate-synthase
MIRGSIVAIVTPMKKNGVIDWASLRNLVKFHLENKTDAILAAGTTGENTTMTLEEHGKVIRTVVKEVNKKISVIAGIGANSTIEAVKLTKMAKDAGAEYGLSVTPYYNKPTQYGMYNHFKEVATVGLPIIVYNVPKRTGVDINNETILKLSLIKNIVGIKESSGNLARALELIEKYKKQDFYLLSGDDSTACEFILAGGHGVISVTSNIVPKLMHELCIASSKGKIELAYKLNKELMPLHYALSLESNPIPVKWALKKMGLVKKGIRLPLTWLATKYKKPLLKTLKSLEVI
>NC_018676.1|WP_014895066.1|187655_187889_-|acyl-carrier-protein
MSNLTKKIKSIVSKQFNINPLFITSTSLFIEDLGADSLDIIDLIMTLEDEFKLEISDEKSKHIKSIQDVVCLLNTFN
>NC_018676.1|WP_014895067.1|187906_188071_-|50S-ribosomal-protein-L32
MAVQKNKKTRSKRGMRRSHSALVLPTLNKEKFTGIIHRRHYIAEDGYYRGKKLF
>NC_018676.1|WP_014895068.1|188081_189026_-|RluA-family-pseudouridine-synthase
MTNYNKYKKIKSILFNQRLDNFLKKKLKGIKTSLVYRLIRKGFIIINNKTVTAKNKLQLGDKIRIPILYINKNQININETLRFSFSNTITYESNDWFIVNKPSGFAVHGGCIGNIGLIDALFLIRKDLNFIYLVHRLDKNTSGCLLLAKSINFLLFINFAFKNKYVEKCYLALVEGAWPIKFTYISAPIKKYKLHQNRVHYNIVNQLGKPSYTFFEICNKFTGFTLIKVFPITGRMHQIRVHTAYLGHPLLGDEKYGSIFGKKFSFYLKLKRLFLHSYFLRFPELKSGYFIQIKTKLDKDLFLVLNRANTYLTY
>NC_018676.1|WP_014895069.1|189126_190761_+|Rne/Rng-family-ribonuclease
MKRILINASQPEELRVALVDGQLLYDLDIEYCNKEQRKSNIYRAKIIRIEQSLEAVFVDFGAKRHGFLPIKEISKEYLLNDCNSNIREIIKEGQELIVQVEKEERSNKGAALTTYISLAGRFLVLMPNNYRSGGISRRITGTDRFKLKEAIKKLFIPKNMGIIVRTAGIGRSSKDLQCDLNYLIQIWEAITEEANKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSVYIYNDALNFIKQVMPTYQKKIKLYKDELPLFTKFKIESQIATAYQREVKLPSGGSIFIDSTEALVSVDINSARATRGDDIEETALHTNLEAADEIGRQLRLRDIGGLVVIDFIDMALTRNQREVENRIRTAFKVDRARIQLCRISRFGLMEMSRQRIRPSLRENSGIVCPRCNGQGTIREVSSLSLSILRLIEEEAMKDNSSKIRAVLPVAIATYLLNEKRNIIVKIEVRQNVKIIIIPEQDMESPHYAVERLRYDQIFGEKYSNKKNLLSKKTTYMEKKIRTEKAAVSIVNHSTVTYNNFITRIWKTLIEKLY
>NC_018676.1|WP_014895070.1|190767_192390_-|MFS-transporter
MLISTKHSLNSQKNNLPNKKNSLFTPLTFKPFRIIWFADLIANLGTWAQSVASVWILTESHASSITLAMIQVVTALPLVLLSIISGVWADNYDRRKLMLLGMVLEFTGGALITSLDFFGFLTSTKLILSILGMSIGASLAVPAWQAAINEQVSKNQVTNAVILNSVNYNFARALGPVIGGILINTVGTAWVFLLNCLCYLGLIWAVWQWKQIYPKRILPPEHIYEGVISALKFAKYSKVMRSVMLRSFVFGLSASALWALLPVFANTKASIYGYMLGALGTGAIVGSAIVNKLCQLVDTNIMISSASILLSIVMLLIGSLNIKLLIFGALMIGGSCWITVLASYNSSVQMLVPDWVKARALALYQTTLYAGLAIGSFGWGHIAGIIKVRLGLLLAGLLLLLTTIALLNLKLPKIDDKHHSIMHQIQPKYKLEFSKYKESIIVSIEYCIPVSNTNDFIDLIIKLRTVRLRNGAKSWSLYRNVEDKEIWQEIFLIRNWLQYLRMLSRITIADKIIIDKVNKMHIGTTPPRTYQGIQQIKPKI
>NC_018676.1|WP_014975162.1|192398_193499_-|3-dehydroquinate-synthase
MKIIKINLLNSKYPIYIGSGLLKKGVYIPYIFGKQIIIITNKKIASLYLDILKKKLLLYNVKVVILPDGEQQKNIASVKHIWDLLIYYGFNRTSTVIALGGGVIGDISGFTASCYQRGISIIHIPTTLLSQVDSSLGGKTGVNHEKVKNMIGSFYQPKAVIIDADLINTLNNRETSSGISEIIKYSLICDYIFFKWLETNIKKLVTLNKTILQFSILKSCIIKCKFFIKDEKEKNIRALLNLGHTFGHAIEQYKGYGNWLHGEAISVGIMIATKVSIEIGRLKASVLYRIYNLLLKAKLPIYVPVGMTSTNFIKLIKLDKKNLYEKTRLILLNRIGKGHIINNINEKFLCTLIDYLPKKIKLVLNR
>NC_018676.1|WP_014943254.1|193485_194007_-|shikimate-kinase
MLLSNVVLTGPMGTGKSTIGKLLSKKLNCKFYDIDKEIENFCGCKIYEFFLLEGESSFRKREHKIIKDLVKKNGIVLSTGGGSIMNSKNIPLLRNKCIIIYLYTSISNQINRLDNTTDRPLLKRNKVNKSIYNIFKNRERIYHYLADIIINTENKLDLIIKEIKKRIVFFENH
>NC_018676.1|WP_014895073.1|194006_194210_-|50S-ribosomal-protein-L31
MKKNIHPKYKNVIIKCSCGNLFNIKSTLKKNLFVEICSHCHPVYCGKQKQLNIGNRIDRFNKQFGKK
>NC_018676.1|WP_014943255.1|194320_194845_+|ATP-dependent-protease-subunit-HslV
MTTIVSVRRNNKVAIAGDGQVTLGNTVVKSNASKVRKVYKGQVLSGFAGSTADAFTLFELFEAQLEKYQGNLIKASVELAKQWRNDRILRRLEAMLAVADKNISLIITGIGDILEPENGIITIGSGGNYAKAVAMALLENTNISAFDIVKKSITIAAEICVFTNKNISIELLDY
>NC_018676.1|WP_014943256.1|194865_196167_+|ATP-dependent-protease-ATPase-subunit-HslU
MTPKKIVEELNKYIIGQEKAKKAVAIALRNRWRRMQLDYKLRSEITPKNILMIGPTGVGKTEIARRLAKMAKAPFIKVEATKFTEVGYVGRDVESIIRDLIEISIKLVKEKANKQIKTKAKYAVEERIIDAILSSKNKENDNIENRKLIINKLRNGELENKEIDIKLTQKVSGIDIMTPPGMEEMANQLQSIFSNINKQTRENRKITIVEARKLLMEEESAKLISDETIKKSAIEAVEQNGIVFIDEIDKIVRRSGDNNGTEISREGVQRDLLPLIEGSSVSTRYGMIKTDHILFIASGAFHLSKPSDFIPELQGRLPIHVELSALSPKDFERILTEPSSALTRQYQALLKTEGITLEFTKEGIQRIAEIAYSFNESTENIGARRLHTVMELLLETPMYKGNEIDHKIIVTKEYVDKIMKKIALKEDYTKYIL

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Crispr_ID: NC_018676_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018676_3

269633-269751

Orphan

Consensus_repeat	Method
TAACCTCTAACAAACAACAAACAACAAACAACAAACTAACCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018676_3

>merge|NC_018676|3|269633-269751|CRISPRCasFinder
TAACCTCTAACAAACAACAAACAACAAACAACAAACTAACCTCTAATAACTAACAGATAACCATTTTATTTATTACACCATCTAACATCTAACAAACAACAAACAACAAACAACAAACT

>NC_018676|3|3|269633-269751|CRISPRCasFinder
TAACCTCTAACAAACAACAAACAACAAACAACAAACTAACCTCT	AATAACTAACAGATAACCATTTTATTTATTA
CACCATCTAACATCTAACAAACAACAAACAACAAACAACAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_018676.1\|WP_014895110.1\|248465_248921_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NC_018676.1\|WP_014943267.1\|253379_254741_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_018676.1\|WP_014943277.1\|285710_286274_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NC_018676.1\|WP_014895120.1\|270634_271495_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NC_018676.1\|WP_014895115.1\|260324_261707_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NC_018676.1\|WP_014895112.1\|249768_251370_+\|glutamine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235424
NC_018676.1\|WP_014895111.1\|248945_249791_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_018676.1\|WP_148267230.1\|274841_276062_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234701
NC_018676.1\|WP_014895109.1\|247488_248460_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_018676.1\|WP_014943266.1\|246133_247492_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NC_018676.1\|WP_014895117.1\|263186_264884_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_018676.1\|WP_014943270.1\|266207_266651_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|274307
NC_018676.1\|WP_014895129.1\|287021_289670_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_018676.1\|WP_014943271.1\|273588_274842_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_018676.1\|WP_014943276.1\|284716_285523_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NC_018676.1\|WP_014943275.1\|283529_284711_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_018676.1\|WP_014895127.1\|285519_285708_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|224066
NC_018676.1\|WP_014895116.1\|261739_263086_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NC_018676.1\|WP_014943274.1\|280023_280500_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NC_018676.1\|WP_014943273.1\|277435_280027_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743

Protein	Function_ID	Function_description	E-value
NC_018676.1\|WP_014895110.1\|248465_248921_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.24476e-65
NC_018676.1\|WP_014943267.1\|253379_254741_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	1.87559e-160
NC_018676.1\|WP_014943277.1\|285710_286274_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	3.20696e-111
NC_018676.1\|WP_014895120.1\|270634_271495_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	2.02551e-141
NC_018676.1\|WP_014895115.1\|260324_261707_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	1.72467e-171
NC_018676.1\|WP_014895112.1\|249768_251370_+\|glutamine--tRNA-ligase	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NC_018676.1\|WP_014895111.1\|248945_249791_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	3.7233e-83
NC_018676.1\|WP_148267230.1\|274841_276062_-\|hypothetical-protein	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	1.06272e-44
NC_018676.1\|WP_014895109.1\|247488_248460_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.84904e-123
NC_018676.1\|WP_014943266.1\|246133_247492_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	3.99434e-134
NC_018676.1\|WP_014895117.1\|263186_264884_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_018676.1\|WP_014943270.1\|266207_266651_+\|peptidoglycan-binding-protein	gnl\|CDD\|274307	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.	0.00260852
NC_018676.1\|WP_014895129.1\|287021_289670_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_018676.1\|WP_014943271.1\|273588_274842_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	7.05211e-163
NC_018676.1\|WP_014943276.1\|284716_285523_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	5.28191e-114
NC_018676.1\|WP_014943275.1\|283529_284711_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_018676.1\|WP_014895127.1\|285519_285708_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|224066	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].	2.20945e-05
NC_018676.1\|WP_014895116.1\|261739_263086_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	3.42158e-126
NC_018676.1\|WP_014943274.1\|280023_280500_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	5.1182e-23
NC_018676.1\|WP_014943273.1\|277435_280027_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0

>NC_018676.1|WP_014943270.1|266207_266651_+|peptidoglycan-binding-protein
MIKKYMLKRLILAISLLLVLKNNNVILNEIKLNKFFIFNKAPFIKTIYFNYDLYYFSNKINNILKQYVIYIRNNPSKQLLLKINTNVLGNIKYNFILNKSRMSFIVNNLVLNGIHKNNIKYIICVKNKKVSNELNTLNNNKLIVNIL
>NC_018676.1|WP_014895117.1|263186_264884_+|aspartate--tRNA-ligase
MRINYCGKVNQTILNSYVKLYGWVNKIRDHGGILFLDLRDMYGRTQLVIDSKKLDFTNFVLAKKLKSEYIIKVIGLIKLRPVKDGFTNKIDIFVIELNLLSKSIKLPFKLYAKKKIKEEIRFKFRYIDLRQKKYIKKILIRSQIIHKIRSFLDINKFIEIETPILSNITVEGARTFIIQSHKQTFALPQSPQIYKQILMCSGLDRYYQIAKCFRDEDLRSDRQPEFTQIDIETSFMNKQAIINVVEKMIKSLFKELLHFTFSSAFKIIKYTDAINKYGTDKPDLRVPIKITDIEDVIPQSLTCIFLNKLQKLTSQCNRIAAIKLKGGVCLSLKQIIKYISFVKLYGAKGLIWIKVYNINLGLNGLQSPILKHITDEVIHNLKKRLHLKNGDLVFCCADTINIVNTSLSVLITQIANDLKLYIKAWAPIWVVNFPLFKRDIVGTLTSYHHPFTAPTSTLDDIIYNPEKAFANSFDLIINGIELGGGSIRINDYKLQKIIFKLLGLTQRTLNNNFGFFLKAFKFGVPPHGGLALGLDRIVMLLTKSDNIRDVIAFPKTNKFICPLSV
>NC_018676.1|WP_014895116.1|261739_263086_-|magnesium-transporter
MKKNNIIPNLWKALSNKNYKEIKSLLKYFRSADIAEMISRTSNKLIIQILNSQSSKRKADIFSYLPKDKQFEITKELNNEEIIKIFVKMNSDDSADVFNMFEPIRRENILRSMANKVRENLIKLSSYEDGTAGAIMTSNYVVIPENITVLQALNQIKQTAPDAETIYQIYVLDQDQKLTGTLSLRQIILANPIALIKDLMIKDVIYVHTNSKQEYVTKMISHYDFLAIPVINSEHKLVGIITYDDAMDVVERETTDDFHKSGSVGTLEYNIVRTNLLTLYSKRIFWLVLLIFGNLFSGAGIAKYEDTISSKISLVFFLPLLIGSGGNAGSQASTLMIRGLGTGEINIKDWAKLMSKELLVSGILGITMAIVIFPIGYIRGGIEVAYSVAISMIIIVIIGSLLGMSLPFCLNRLGFDPAAASAPFVATLCDSLGVLIFFSIATIILNVK
>NC_018676.1|WP_014895115.1|260324_261707_+|cardiolipin-synthase
MKYIKTFLNIILFCFLLSSIIIALFMSRTPQSAIAWLISLITVPYFSIPMFWLLSCPNFCGYLIKKNSLHIKKFKNTFTINCNVQVVEKLSSMPLTQSNFVKLLINGYITFKSMFDGIKRAKKYILIQFFIIKNDKIGQELKNSLIYSAKKGVNIFVIYDQIGSHNLSKSFIKEFKKAGINLFKFGFCKGWKNLLKINFCNHRKLILIDGKEAWIGGLNIGNEYLGINKQIGYWRDTHLHIIGPSVLCLQEIFLEDWFWSTDTKIHNLNWKPILSNIKKKHIIVVPSGPINNRNNASLLIQNSINIAKQRFWITSPYFIPDQSVIDSLKLAALRGVDVKIIIPERTDHLFVYLSTFSYFSELIRVGVKFYKYIKGFLHQKVMLIDNHTASVGTINLDNRSFRLNFEITAYIIDGDFAKDVKYMLQQDLLYCNLIHLNEINCRSLINKLLSKSAFLASPIQ
>NC_018676.1|WP_014943267.1|253379_254741_+|cysteine--tRNA-ligase
MYIYNTLKKNKELLVPINLNKLKIYVCGSTVYDYCHIGHGRNMFIFYFFYKYLKHRGYILKYIRNITDIDKKIIKKSIKTNENTKNLTQRIINSIHKDEKKLGLLAPDCEPKVSDYKNIIIYYINKLLKNDFAYIKKGNVFFKIKTHKLYGMLSNQTIKNLNFFLSKKFSRYKKYKLDFSLWKKSQYKFGWASPWSVGFPGWHIECSVLSKIYLGNKFDIHGGGLDLIFPHHENEKAQSELLFCKPHVNLWVHSGHLNVNNKKMSKSLHNTILVRYIIIKYNNEVINFFFLITHYRKSINFTIDQLDIVLNLLNHILYKIICITPKRQKYNNVFYNQIILALENDFNTVKAISILFNLLYKIKKAFKLGKIKKSQSLCFELIRLGKILGILKSLKKFKPQILFNINKVGSLILKRNIYKKETNFLQSDKLRISLTVFDILIQDTIKRTFWLNR
>NC_018676.1|WP_014895112.1|249768_251370_+|glutamine--tRNA-ligase
MIKKNIIDYLSKDSKFRSLFKKNFITRFSPEPNGCLHLGHVKSIWVNCSLAKVLNGNCYIRFDDTNPIKENKIYITSVLEDIHWLGLKLKNINYASNYFNKLFEWALLLIKQGKAYIDDLSISEIKQYRGDFKSVGYNSPYRKRNIKDNIFFFKKMYKGFVKEGKKVLRAKIDMNSKNINLRDPIMYRIINVYHYRTGNYWKIYPSYDFTHGQSDMLEGITHSICTLEFETNRYLYQWFLKNIFNDYFKYPKQIEFSRMNISFSLTSKRKIKLLIDKNFIFGWDDPRLSTISGMRRRGYTPTSLKNLCKITGITRSNNNIDIHLQYYAIRSDLENKVIRVMCVINPIKLILTNLIVDYEEIITVKNHPFIEMGARSMYFNREIWIDLKDFNNKQNLFRLSKGKNVRLRHSYIIKCKKFVFFKNEQIKEIQGIVYLNSKHKNLEGKILKGVIHWVSVKHSVPVLIRLYNTLLHKNIVNNNSFFFTDSIGEPIFSHIKPETRVQFERIGFFCADRYDFNKTNFVFNEIISLKTFI
>NC_018676.1|WP_014895111.1|248945_249791_+|shikimate-dehydrogenase
MEKKISCVFGKPIKHSMSPILHNSFGKKNNICLYYKAINIRNKILLKKEWIKFVICGGIGVNITIPYKQYAIKLANKLSYRAKIAGAVNTLIINKKNIFGDTTDGVGLIRDLNRLNINLLNKRILLLGAGGAVNSVIQQVLDLGPNKIYLVNRTLLKCKDIRNRFNLKNIIQFCSYDELKNKNAFDVIINGTSLSIKKDKINFNNNAFKTTIAYDLMYSKYITKFLKFAKNNNAKIYDGLGMLIEQAAETYFLLNNIRPKIKNLHKKIRNLLNNNDKKKYY
>NC_018676.1|WP_014895110.1|248465_248921_-|peptide-deformylase
MNILKYPDKRLKFIAKPIKLINYKIRTLIFKMLNTMYAHNGIGLAATQINKHIRIFVMDISKNSNQPLIIINPKYIYVSTTYKKVKEGCLSIPNYFEYIYRSINIIIKAIDINGNKFIINASGLLSQCIQHEIDHLNGKLLIDNLSNKQKG
>NC_018676.1|WP_014895109.1|247488_248460_-|glucokinase
MNHLALVGDIGGTNVRLALALVSTNQLKLYKIKIFKCINYLNVYEVIKQYISLVGCDYPKQACLAFACPVYSNFIKMTNNSWTIAKYELKHKLNLQKLKIINDFTAIALGLTHIQAKDLYKLGYGKTNNNSNKILIGPGTGLGIAGLIHTKNSWIPFSGEGGHISFAPIDNFEVYILNWFQNNYKRVSIERILCGQGIVDLYYAHVNYYINHSYNVLTTPDAITKAALKKNDPLAYKTILMFCKLLGHVTGDMALTLGAKGGVYLCGGILPRIIKILDNSDFRNSFDNKGRMSFYNKEISTWLVKSKWIGLLGSADALFNNKL
>NC_018676.1|WP_014943266.1|246133_247492_+|glucose-6-phosphate-dehydrogenase
MKIIVKNITSLSLIMFGALGDLALRKLYNSLFILYKKNIINKKINILCLARKVETLNTFRYTIYKRLIKANYINNKRDLVKLINFINCLYYLNIDFTTLTHFKFIKNQNLKNNLSKLVYFAVSSNIFKIICKYLNLNKQLTKTAKIILEKPIGCNLKSSININNYINNIYFERSIFRIDHYLGKRQVKNLLSLRFLNPVFYMLWKKKYITHIVINLAEHLGIEDRWGYFDKTGQLRDMVQNHLIQLLSMITICIPKTKQISVKNIYKEKIKILKDLNNSFLTVDIKYGQYISNKFKNKIFNGYLEEKNSNKNSSTETFIYIKTKINNFHWYGIPFFLMSGKRLKQKLSQIKIYLKKNSLNNDLNNKLIINLQPKEDINLNKFKIKQMSLNKNNYLDSYDFLILEVIKGKQDWFVSKEEIDYSWRWIDKVIHIWKQKNIPIFYYKSFTWGPIG
>NC_018676.1|WP_014895120.1|270634_271495_+|lipoyl-synthase
MRHKPSWIKIRVPLYNEINNIKNKIRKTYLHTVCEESSCPNILNCFNEKIATIMILGNKCTRKCPFCDVLYGKTIKINYYEPFDIIKILIKLKINYIVITSVNRDDLEDGGANHFSKCIGAINRLYKHIKIEILIPDFRGKSDIAINILIKNKPTVLNHNIETIHNLYLQVKPGATYDISLNLLKQIKKYCPKIKTKSGLMVGIGENDKQLINVIKDIKTNQVDIITIGQYIAPSNFHLPIKRWVHPTSFYFYAKLCYILGFNYIASGPLIRSSYKAKNQNYGKNI
>NC_018676.1|WP_014943271.1|273588_274842_-|aspartate-kinase
MGIIVQKFGGTSVGSIKNIKNIAKQISFFYKKQHKIIVVVSAMSGETNRLLCLAKLMYKKKTINDIYNHRELDVLLSTGEQVTMSLLSIALNLVGVKSKSYTGAQLSIFTDSVYTKARIQHIDTSVINKDINNNIVVVVAGFQGIDKYGNITTLGRGGSDTTAVAISTAINADECQIYTDVSGVYSTDPRLCNNSSLISYITVEDMLELSSLGSKVLQIRSVEFAVKSNMPVRLLSIFDNNPGTLLIQKRSFLEKKMENPLISGVTYNCNIENITVIVSCEVFPYVCYNILICFSDHKIDICIQNIKNLTTQFIITFTISKSDYNLLFHTIQKYICIYFCGHILADNKSVIISIVGVGIYSHKCILHNVVYTLEKHGIIILFLSTSELKLSIFVFDDYMDLALHVLHTTFNLNNIVQ
>NC_018676.1|WP_148267230.1|274841_276062_-|hypothetical-protein
MQKILNKEGKNINFISENTQGTIILKISSFIFEKGGQVISDVGYIYNKLGKFKVYNVIKHNSLFFHVGTLLKGYFSNTTHVNCYIDKIIRYNISVAHSAIHLLNVTIQRVAKKKLIKKGFFINQNKIIFEYKSYKPLTNKILFIIELLINRAIAKQHIILIKLLSKQKKNIKHKNVVVIGKEGGYSIDVCNGTHIKTTKNIGCFCIMSEQCVSKGIRRIEAVTNKNAVRYILKNKLTLKDLSFASNLCLNNVKKNIKHLKNKNKVLLDEFNLFKQITIQKQINKLLSKMFYFFGYKFLIYKIKSKYKKDLFVILHSIVNKLVNKSIIIVYVLNKHNINVFIKITNDCLKFRPYSVFFKQVLQTNKTIFYNATTNVSYLKTSINNFNMLYTKTLKTNIKTFLFKRGL
>NC_018676.1|WP_014943273.1|277435_280027_-|leucine--tRNA-ligase
MMYPFSYKKIELEAQNFWYNHNCFEIVEIPNKEKFYCLCMFPYPSGNLHIGHVRNYTIGDVISRSQRMLGKNVLNPIGWDAFGMPAENAAKKNIVSPTDWTNSNIYYMYNQLKSLGFSYNWDRKITTCKIDFYRWEQWFFIKLIEHGVIYKNNAIINWDPLEKTILANEQVINGIGWRSGAKIEHRKIPSWFLKITDYAYELLRCLANIDWPESVKKMQVNWIGKYKGIEVSFKVIGSVPNCYSYLKVFTQRPDTLFGVTYILLAPDHHLVELAAQYNYQIKKLCNTFTFCGKCSLATLKNKELGLYVGYNVLHPITNEILPLYVSSFRYFEYGATASMGVPAHSHRDWDFANTYGLPFKTVVSDINGKVPDISKNAYTDFGFIINSGIFNNITCFEAFDYIFYFIKQYKSGVVKQKIKLRDWGISRQRYWGTPIPVKYGITGKQTPLTDEEIPVYLPKHGCLNSKFNLKKIPSFYVLGNGWVRDTETFDTFIESSWYYARFCCTDNNNSILDARVNYWLPVDMYIGGIEHAILHLMYARFFHKLMRDFGLVDCDEPFKKLITQGMVLTYTYYRESFGIKEWFNPLDVCLLKDKKNGNIIPTVKRDGGIVIRNGIEKMSKSKNNGIDPNVLINRFGADTLRLFVMFSAPTEQVLIWSESGIIGSSRFIKRLWNIVHTYIYISGSEHTIIKLSSLRPDQFNLYRQLQKTIKKATSDMIGRHVFNTVISTVMKLTNLVLHFIDIDSSIIGLAVTREALKSIILILAPIVPHITHVLWKVLGFSYAVIDAKWPSYNKHCMLGQLFTVLAQINGKIRKEIKLPLNYHTKTFASTILSSISIKGYLNCKEIHTLIFVHAKVINIVVSL
>NC_018676.1|WP_014943274.1|280023_280500_-|rRNA-maturation-RNase-YbeY
MKKKIKCVYVHMQFIKNNTIKKIVPNESLLSSWFCSFLKPKYKHYKDIVFNIRFVEYKEIIGLNSYYRGFNSLTNIISFSYEALSQRINIQLLGELVITPTLLLYESFKKNKAFIAHCAHIIVHGLLHLIGYNHKNVTDADNMENIEYSNLNKTNIHL
>NC_018676.1|WP_014943275.1|283529_284711_+|tryptophan-synthase-subunit-beta
MNIIPNHKGLFGNFGGRFVSETLIPLIIELEKTYKTAKKDESFRKELAYYQKTYIGRSSPLYLADRLTQALGGAKIYFKREDLNHTGAHKINNCIGQILLAKRLGKNRIIAETGAGMHGVATATVAARLGMKCVIYMGSTDVKRQKENVYRMNLLGAKVVPVNSGKGTLKDAMNEALRDWVNNIETTFYIIGTVAGPHPYPLIVRDFQSVIGKEVREQIIKIEGKLPDILVACIGGGSNAMGLFFPMIKDNTVRMIGVEAGGHGIETGKHAASLNGGVPGVIHGNRTYILQNKDGQIKDAHSISAGMDYPGIGPEHSYYYKCKRIDYVSVTDKEAIEAFKKCCYLEGIIPALESAHALAYVTKIAHSLSNKTTIVLNMSGRGDKDISIIREHS
>NC_018676.1|WP_014943276.1|284716_285523_+|tryptophan-synthase-subunit-alpha
MKLNKRIINCFEQKKRAAFVTFITAGDQDYEKSLTLINSLPKAGADIIELGMPFTDPIADGEIIQKSTQRSLKTGQNQKKTLELVKAFRLFNKKTPIILMGYYNPIYRYGIKKFIKDAKNAQIDGLIIVDLPPEHAQEVSVPANKQGIDFINIITPNTNIKRIPFLVKNSSGYIYYISINGVTGGSVPIFYEVEKAVKLIRKYTNLPIAVGFGVKNRNSVKKLANISDAVVVGSALLKQIEIHCYDQKTAISNVLNLTSRLSRGLVKI
>NC_018676.1|WP_014895127.1|285519_285708_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MSLLITTDCINCDMCELVCPNNAIFPGEEVYVINHDLCNECIGVFPHPQCQQVCPVACIVQP
>NC_018676.1|WP_014943277.1|285710_286274_-|peroxiredoxin
MAIINKKIRPFTATAYFNGKFINISNEDLQGKWSVIFFYPADFSFVCPTELLDLSENYSTFKTLGVEIYSVSTDTHFTHKAWHDSSFTVSKIKFPMIGDPSGNISRSFNVFVAETGLAERSTFVIDTECKIKLAEYNAIGIGRNSKELIRKIQAAQYITNHPNEVCPANWTDGSKTFKQNIDFVGKF
>NC_018676.1|WP_014895129.1|287021_289670_-|valine--tRNA-ligase
MKYNNWHKNWETTKRLLNTYTSVPFSIMIPPPNVTGKIHIGHAFEYTLIDTIIRQKGMQGYKTLLQFGTDHAGIATQLLMDKKLSHDKVNRMFLGRKLFLKKTLQWCNKTIPKIILQMKSIGMSVDWKKERFTMDYGFYQAVQEAFIKLYKEGLIYRGKRLINWDPNLLTALSDIEVKNLQDLGKLWYIRYHLLNIHKVEAFCQKKAYLIVATTRPETIFADTCIAVHPFDKRYKAFIGKCVVLPLIGRILPIISEEVVDIKFGTGCVKITPAHNLIDYKIGKRQNSLFINMFNNRFKVRQKAEVCILKSGILLKYNLIKLPKVYVGLSIKSLRKNIVKDLLKNKFLEKKVDNHLLMLPCGDRSCAIIEPLLTDQWFVSIKKLANLAINAVKNGNITFIPKNYEKIYINWMYNLKDWCISRQLWWGHRIPAWYDKNNIIFVGRNEEEIRSKYAINLKTKLNQDQDVLDTWFSSGLWTFTTIGWPQIRTKSFNLFHPSSVLITGFDIIPFWVSRLIMMTLKLINELPFKRIFIHGLIRDKQGQKMSKSKGNVIDPIDVIKGINYGADALRFTFLSISLPGKNINFDLRRFKGYMNFCNKIWNATRFVLSKIELFYNNEYNQFCCWENVTSINKFIISSLQNTKRKILLYFDEYRLDLASQTIYEFFWYDFCDLYLEITKIVFNSNYIGVKISTINTLLYVFKEILLLLHPFIPYITDEIWINIMQVQYKNKHITTTILNQDLPKIDINKLDDNAIYDVNFINIFITKLRCIRSLIYLNKSIKLTVFCSKVKLFYKSLINKYKIYICNLANINIIKYSEPCINCVSKKNQQFFILHIPLLSFCQRNYLVEELQKKKQLLKLSCLKINLKLNTKTSFTAITTNKK

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Crispr_ID: NC_018676_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018676_4

293036-293129

Orphan

Consensus_repeat	Method
TTTTTTTTCGTTCATTATTCTTTTAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018676_4

>merge|NC_018676|4|293036-293129|CRISPRCasFinder
TTTTTTTTCGTTCATTATTCTTTTAACTTTTTTCTATTGCTTTGATCTATTTCGCTGTTACTAAATCTTTTTTTTCGTTCATTATTCTTTTAAC

>NC_018676|4|4|293036-293129|CRISPRCasFinder
TTTTTTTTCGTTCATTATTCTTTTAAC	TTTTTTCTATTGCTTTGATCTATTTCGCTGTTACTAAATC
TTTTTTTTCGTTCATTATTCTTTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018676.1\|WP_014895132.1\|293750_295382_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_018676.1\|WP_014895133.1\|295417_295708_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_018676.1\|WP_014943278.1\|291076_292903_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_018676.1\|WP_014943273.1\|277435_280027_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_018676.1\|WP_014943282.1\|303163_303982_+\|indole-3-glycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|234710
NC_018676.1\|WP_014943277.1\|285710_286274_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NC_018676.1\|WP_148267230.1\|274841_276062_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234701
NC_018676.1\|WP_014895136.1\|298478_299243_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NC_018676.1\|WP_014943281.1\|301557_302136_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NC_018676.1\|WP_014895129.1\|287021_289670_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_018676.1\|WP_014943280.1\|300113_301580_+\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184146
NC_018676.1\|WP_014943276.1\|284716_285523_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NC_018676.1\|WP_157677923.1\|299462_299612_+\|hypothetical-protein	unknown	unknown	unknown
NC_018676.1\|WP_014895140.1\|302141_303164_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NC_018676.1\|WP_014943275.1\|283529_284711_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_018676.1\|WP_014975189.1\|289841_291083_+\|acetylornithine/succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|179933
NC_018676.1\|WP_014895127.1\|285519_285708_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|224066
NC_018676.1\|WP_014943279.1\|295920_297003_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NC_018676.1\|WP_014943274.1\|280023_280500_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|237573
NC_018676.1\|WP_016858028.1\|297016_297331_-\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046

Protein	Function_ID	Function_description	E-value
NC_018676.1\|WP_014895132.1\|293750_295382_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_018676.1\|WP_014895133.1\|295417_295708_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.7388e-41
NC_018676.1\|WP_014943278.1\|291076_292903_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_018676.1\|WP_014943273.1\|277435_280027_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_018676.1\|WP_014943282.1\|303163_303982_+\|indole-3-glycerol-phosphate-synthase	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	5.87198e-91
NC_018676.1\|WP_014943277.1\|285710_286274_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	3.20696e-111
NC_018676.1\|WP_148267230.1\|274841_276062_-\|hypothetical-protein	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	1.06272e-44
NC_018676.1\|WP_014895136.1\|298478_299243_+\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.3098e-99
NC_018676.1\|WP_014943281.1\|301557_302136_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	9.40678e-93
NC_018676.1\|WP_014895129.1\|287021_289670_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_018676.1\|WP_014943280.1\|300113_301580_+\|anthranilate-synthase-component-I	gnl\|CDD\|184146	PRK13565, PRK13565, anthranilate synthase component I; Provisional.	3.72237e-177
NC_018676.1\|WP_014943276.1\|284716_285523_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	5.28191e-114
NC_018676.1\|WP_014895140.1\|302141_303164_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	2.77802e-101
NC_018676.1\|WP_014943275.1\|283529_284711_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_018676.1\|WP_014975189.1\|289841_291083_+\|acetylornithine/succinyldiaminopimelate-transaminase	gnl\|CDD\|179933	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase.	0
NC_018676.1\|WP_014895127.1\|285519_285708_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|224066	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].	2.20945e-05
NC_018676.1\|WP_014943279.1\|295920_297003_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	1.41166e-129
NC_018676.1\|WP_014943274.1\|280023_280500_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|237573	PRK13963, PRK13963, rRNA maturation RNase YbeY.	5.1182e-23
NC_018676.1\|WP_016858028.1\|297016_297331_-\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	1.14535e-51

>NC_018676.1|WP_014943278.1|291076_292903_+|elongation-factor-4
MLINTKNIRNFAIIAHINHGKSTLADRLIQLCGGLYKRDFKNQVLDSLDIERERGITIKSQAVTLFYKSKQGKTYRLNLIDTPGHVDFMYEVSRSLYACEGALLLIDASQGIESQTITNFYTAFKRDLTIIPVVNKIDLPQASPKYTISNIKKIFNLHFQSVCCISTKLGLGIKVLLETLIKTIHNPKGDPYKKLLALIIDSWFSKYLGVISLVRIFDGNLKKGDQVIINSTGQSWYIQTVGFYTPKRCLTLKLSAGQVGFFVAGIKDIHGAPVGDTITHANANTDHRISGFKKVKSKIFAGLYPENVKDFKHFSTVLERLALNDASLIYTPENSNVYGCGFRIGFLGSLHLEIIKERIEREHGIKIIITLPSVKYKIKLQTGKIEYIYDPSKLPENYKLFKLYEPIVLARIIVPKIYVGNIIKECITFRGKQLCVVFINNFIKMIYELPMAEVITNFFNRLKSVSKGYASLDYEFYRFKKSNMVRLDILINNNRIEALTMIVPFDKAYKQGQFILKRIKLLLSKQLFDLNIKAVSYKKTLAKTQIKAIRKNVTAKCYGGDITRKKKLIEKQKEGKKRMKSIGNIEIKLNKNIFLSLFKTPNLFDQFS
>NC_018676.1|WP_014975189.1|289841_291083_+|acetylornithine/succinyldiaminopimelate-transaminase
MSINPKTKFKDFYKYILPLYSPQNKIPVKGYGSTIWVQDGRDYIDFSGGIAVNALGHSNPVLLEALKEQSKKVWHVSNSYTNEPSLCLAKKLVKNTFADKVFFCSSGAEANEAALKLSRRYAYNHFGSKKNIIISFKKSFHGRTFFTVNVGGKKNYSHGFGPSPFCIIHAEFNNIHNFRKVINNYTCAVIIEPIQGEGGINVANYSFFKQLRNLCKIYNALLIFDEVQCGMGRIGKLFTYMHFKIKPDIITLAKSIGCGFPLAAMLTTNKVGEAFSIGVHGSTYGGNPLACAVGNIAFDVISNKEVLSGVKRKNKLLKQHIKRINLEFNIFKEVRGLGLLIGIELNKNYINLGRKILKVAFENGLMLLNAGPNVLRLAPSLLISIEEIEEGMSRLYTTIKCIKQNFKYLEYLC
>NC_018676.1|WP_014895129.1|287021_289670_-|valine--tRNA-ligase
MKYNNWHKNWETTKRLLNTYTSVPFSIMIPPPNVTGKIHIGHAFEYTLIDTIIRQKGMQGYKTLLQFGTDHAGIATQLLMDKKLSHDKVNRMFLGRKLFLKKTLQWCNKTIPKIILQMKSIGMSVDWKKERFTMDYGFYQAVQEAFIKLYKEGLIYRGKRLINWDPNLLTALSDIEVKNLQDLGKLWYIRYHLLNIHKVEAFCQKKAYLIVATTRPETIFADTCIAVHPFDKRYKAFIGKCVVLPLIGRILPIISEEVVDIKFGTGCVKITPAHNLIDYKIGKRQNSLFINMFNNRFKVRQKAEVCILKSGILLKYNLIKLPKVYVGLSIKSLRKNIVKDLLKNKFLEKKVDNHLLMLPCGDRSCAIIEPLLTDQWFVSIKKLANLAINAVKNGNITFIPKNYEKIYINWMYNLKDWCISRQLWWGHRIPAWYDKNNIIFVGRNEEEIRSKYAINLKTKLNQDQDVLDTWFSSGLWTFTTIGWPQIRTKSFNLFHPSSVLITGFDIIPFWVSRLIMMTLKLINELPFKRIFIHGLIRDKQGQKMSKSKGNVIDPIDVIKGINYGADALRFTFLSISLPGKNINFDLRRFKGYMNFCNKIWNATRFVLSKIELFYNNEYNQFCCWENVTSINKFIISSLQNTKRKILLYFDEYRLDLASQTIYEFFWYDFCDLYLEITKIVFNSNYIGVKISTINTLLYVFKEILLLLHPFIPYITDEIWINIMQVQYKNKHITTTILNQDLPKIDINKLDDNAIYDVNFINIFITKLRCIRSLIYLNKSIKLTVFCSKVKLFYKSLINKYKIYICNLANINIIKYSEPCINCVSKKNQQFFILHIPLLSFCQRNYLVEELQKKKQLLKLSCLKINLKLNTKTSFTAITTNKK
>NC_018676.1|WP_014943277.1|285710_286274_-|peroxiredoxin
MAIINKKIRPFTATAYFNGKFINISNEDLQGKWSVIFFYPADFSFVCPTELLDLSENYSTFKTLGVEIYSVSTDTHFTHKAWHDSSFTVSKIKFPMIGDPSGNISRSFNVFVAETGLAERSTFVIDTECKIKLAEYNAIGIGRNSKELIRKIQAAQYITNHPNEVCPANWTDGSKTFKQNIDFVGKF
>NC_018676.1|WP_014895127.1|285519_285708_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MSLLITTDCINCDMCELVCPNNAIFPGEEVYVINHDLCNECIGVFPHPQCQQVCPVACIVQP
>NC_018676.1|WP_014943276.1|284716_285523_+|tryptophan-synthase-subunit-alpha
MKLNKRIINCFEQKKRAAFVTFITAGDQDYEKSLTLINSLPKAGADIIELGMPFTDPIADGEIIQKSTQRSLKTGQNQKKTLELVKAFRLFNKKTPIILMGYYNPIYRYGIKKFIKDAKNAQIDGLIIVDLPPEHAQEVSVPANKQGIDFINIITPNTNIKRIPFLVKNSSGYIYYISINGVTGGSVPIFYEVEKAVKLIRKYTNLPIAVGFGVKNRNSVKKLANISDAVVVGSALLKQIEIHCYDQKTAISNVLNLTSRLSRGLVKI
>NC_018676.1|WP_014943275.1|283529_284711_+|tryptophan-synthase-subunit-beta
MNIIPNHKGLFGNFGGRFVSETLIPLIIELEKTYKTAKKDESFRKELAYYQKTYIGRSSPLYLADRLTQALGGAKIYFKREDLNHTGAHKINNCIGQILLAKRLGKNRIIAETGAGMHGVATATVAARLGMKCVIYMGSTDVKRQKENVYRMNLLGAKVVPVNSGKGTLKDAMNEALRDWVNNIETTFYIIGTVAGPHPYPLIVRDFQSVIGKEVREQIIKIEGKLPDILVACIGGGSNAMGLFFPMIKDNTVRMIGVEAGGHGIETGKHAASLNGGVPGVIHGNRTYILQNKDGQIKDAHSISAGMDYPGIGPEHSYYYKCKRIDYVSVTDKEAIEAFKKCCYLEGIIPALESAHALAYVTKIAHSLSNKTTIVLNMSGRGDKDISIIREHS
>NC_018676.1|WP_014943274.1|280023_280500_-|rRNA-maturation-RNase-YbeY
MKKKIKCVYVHMQFIKNNTIKKIVPNESLLSSWFCSFLKPKYKHYKDIVFNIRFVEYKEIIGLNSYYRGFNSLTNIISFSYEALSQRINIQLLGELVITPTLLLYESFKKNKAFIAHCAHIIVHGLLHLIGYNHKNVTDADNMENIEYSNLNKTNIHL
>NC_018676.1|WP_014943273.1|277435_280027_-|leucine--tRNA-ligase
MMYPFSYKKIELEAQNFWYNHNCFEIVEIPNKEKFYCLCMFPYPSGNLHIGHVRNYTIGDVISRSQRMLGKNVLNPIGWDAFGMPAENAAKKNIVSPTDWTNSNIYYMYNQLKSLGFSYNWDRKITTCKIDFYRWEQWFFIKLIEHGVIYKNNAIINWDPLEKTILANEQVINGIGWRSGAKIEHRKIPSWFLKITDYAYELLRCLANIDWPESVKKMQVNWIGKYKGIEVSFKVIGSVPNCYSYLKVFTQRPDTLFGVTYILLAPDHHLVELAAQYNYQIKKLCNTFTFCGKCSLATLKNKELGLYVGYNVLHPITNEILPLYVSSFRYFEYGATASMGVPAHSHRDWDFANTYGLPFKTVVSDINGKVPDISKNAYTDFGFIINSGIFNNITCFEAFDYIFYFIKQYKSGVVKQKIKLRDWGISRQRYWGTPIPVKYGITGKQTPLTDEEIPVYLPKHGCLNSKFNLKKIPSFYVLGNGWVRDTETFDTFIESSWYYARFCCTDNNNSILDARVNYWLPVDMYIGGIEHAILHLMYARFFHKLMRDFGLVDCDEPFKKLITQGMVLTYTYYRESFGIKEWFNPLDVCLLKDKKNGNIIPTVKRDGGIVIRNGIEKMSKSKNNGIDPNVLINRFGADTLRLFVMFSAPTEQVLIWSESGIIGSSRFIKRLWNIVHTYIYISGSEHTIIKLSSLRPDQFNLYRQLQKTIKKATSDMIGRHVFNTVISTVMKLTNLVLHFIDIDSSIIGLAVTREALKSIILILAPIVPHITHVLWKVLGFSYAVIDAKWPSYNKHCMLGQLFTVLAQINGKIRKEIKLPLNYHTKTFASTILSSISIKGYLNCKEIHTLIFVHAKVINIVVSL
>NC_018676.1|WP_148267230.1|274841_276062_-|hypothetical-protein
MQKILNKEGKNINFISENTQGTIILKISSFIFEKGGQVISDVGYIYNKLGKFKVYNVIKHNSLFFHVGTLLKGYFSNTTHVNCYIDKIIRYNISVAHSAIHLLNVTIQRVAKKKLIKKGFFINQNKIIFEYKSYKPLTNKILFIIELLINRAIAKQHIILIKLLSKQKKNIKHKNVVVIGKEGGYSIDVCNGTHIKTTKNIGCFCIMSEQCVSKGIRRIEAVTNKNAVRYILKNKLTLKDLSFASNLCLNNVKKNIKHLKNKNKVLLDEFNLFKQITIQKQINKLLSKMFYFFGYKFLIYKIKSKYKKDLFVILHSIVNKLVNKSIIIVYVLNKHNINVFIKITNDCLKFRPYSVFFKQVLQTNKTIFYNATTNVSYLKTSINNFNMLYTKTLKTNIKTFLFKRGL
>NC_018676.1|WP_014895132.1|293750_295382_-|chaperonin-GroEL
MAAKQIRFSEDARTRMVRGVNALADAVKTTLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTADVAGDGTTTATVLAQAIVNEGIKQINSGRSPMDLKRGIDKAILASVEEIKKLSVKCTDSRSIAQVGTISANGDSNIGQLIAKSMEKVGKKGVITVDESRGFEDELEVVEGMQFDRGYISPYFVTNQENMTVELESPYILIVDKKISNIRELLHLLENVAKSGKPLMIIAEDIEGDALATLVVNNMRGIVKVAAAKAPGFGDRRKAMLQDLAILTGSTVISDEIGLNIEKVTIKNLGNARRITMSKENTTIIDGAGSERDIESRVKQIRKQIEETTSDYDKEKLQERVAKLSGGVAVIKVGAATEIEMKEKKARVEDALHSTRAAVEEGVVAGGGTALIRILNKLQNLKGNNEDQTHGIKIALKAFEAPLRQIVNNAGEEASVIINKVKEGVGNYGYNVSTGEFGDLINMGVLDPAKVTRTVLQSAGSIGGMIITTEAMIADHQDENNKMPHSTDGVNGMRS
>NC_018676.1|WP_014895133.1|295417_295708_-|co-chaperone-GroES
MKIRPLHDRVVVRCIEVEQKTSGGIVLPGNAQEKQNRGEVVAIGKGKILNNGAIRPLDVKIGDTVIFKESFGVEKQKIEDEEVIIMSESDILGILE
>NC_018676.1|WP_014943279.1|295920_297003_-|argininosuccinate-synthase
MSKKVILAYSGGEKQSVIANWLQCNYGYEIITFTADLGQEKKKIELAYKKAKVLGIKKMYIEDLKESFVTKYICHRFRANTIYECGKKIGASIVRPLIIKRLIEIAKLNKTTNISYGTTKKSKDLIRLDLSTYSLNPYIKIIAPWRDLNFLSQNKLRTYFKKKKFSNEFVQKHKISCSVNNDFLHIFSKCGCLDNTWNEAKKKRCILSNFFKNTPDKPTYIDITFKQGNPTSINSEVLKSHEIMIKLNNLGSKHGIGRVNKIRYYGSGLKARCCYENPGVTIFYHAHRAIESFTLDHEILQIKDILMPLYAEKVYTVNLWTKEIKMLKALIDTSQKYVNGIVRIKLYKGNVVIIGIKSDQ
>NC_018676.1|WP_016858028.1|297016_297331_-|Grx4-family-monothiol-glutaredoxin
MKNKTIEIIKNQIKKNKIILYMKGTPNLPQCGYSAQAVKFIKKYLNRFKYINVLESVHIRHELPKWSKWPTFPQLWINSKLIGGSDIIFEMYKTGELKRLIKKR
>NC_018676.1|WP_014895136.1|298478_299243_+|P-loop-NTPase
MININYIIAIASGKGGVGKSTITANLALAMNVKGYKVGLLDADIYGYSQSTILNVKKKIFINKKKRIQPIPYYGIKAMSLGFIVKKQTKAIIGRGPIISKLLVDLFTNTNWGYLDYLFIDMPPGTGDIMLSISKSISVSGVIIITTPQDVSLLGAFKGINMFNKIKIPIIGLIENMSYYTCKSCGYSTSIFNNKYNNILKKYKIKKIGCFALHKTLCDKKPILIAKPNSKISVFLKVIADIVDIKLKPQFRIGL
>NC_018676.1|WP_157677923.1|299462_299612_+|hypothetical-protein
MSYEVQIGIYLHKELDINKIHVERIKVKDNKIIVVPILCACLSMMMNIQ
>NC_018676.1|WP_014943280.1|300113_301580_+|anthranilate-synthase-component-I
MKRILIYKEIISDLDTPLSLYMKVANYHWTFLLESIEGKKQWCRYSIIGLRCHQRIEIYNNKINLFKDKIKIEKTKKIDTLVWLSNYIKTIKKTILKKNKSKTILDGGLVGYLGYDIIRLIEPTIKTYKQYNPINTPDIFLLRANELLIIDKYSGRLTILVNVNIYDLKKGLERIKIILKKLSLCANFNKTELVTHSFQTHIKHKYTLKPIFSSFNKFTFQNYIINLQKYINSGDVMQCVPSQRIIIPFYSQPFNLFRALRVLNPSPYMLFFNFNDHYVVGSSPEILVRVDNKTITLRPIAGTIQKRSGIHNEILKDYKEVSEHIMLIDLGRNDVGKVSSTVRVQNQFLIERYSHVRHIVSTLIGILKHKIDLIDIVRATFPAGTIAGAPKIRALEIINTLEPIRRGIYSGAIGFLSWNGNMNIAIAIRTAIVKNYKLHIQAGVGIIEESQYKKEWNEILNKSSVILKAALIAIVEEKGDKVENINYR
>NC_018676.1|WP_014943281.1|301557_302136_+|aminodeoxychorismate/anthranilate-synthase-component-II
MRILIIDNYDSFTFNIVHYFFELGVDVNILRNNLNIKNIENGYFTHLVISPGPCTPNKAGFSIEVIKHFANKIPILGICLGHQIIGQVFGCKMRKSTQLFHGKTSRIKHINKGLFKGFKTPILINRYHSLIIDRKYLPDNLEVTAQTDCYDITPNVIMGIKHKQYNIEGLQFHPESILSFKSHGLLKNFIKK
>NC_018676.1|WP_014895140.1|302141_303164_+|anthranilate-phosphoribosyltransferase
MINTILNKLINKRNIKFNQFYKIMKVINFGKIKSTQLASILTALSIKKETSDEIAATAKVINDYYSFNIHNNKVMDLVGTGSDNFNFFNISTSSSFVVAAAGSINVAKFGSKSISSYSGSLDLLNVLGINLYLKKKDIRKCIKRLQLVFLISEFKYKKKIRKIRMDIRIPTIFNIVGPLTNPIKPFKQLVGVYDRRLLNIFSKVFMKLGSKKTLIIHSKEGSDEISLNKATYISELNNGKIINFLINPTKFFLKKNTLDFIQIKSVLQSLDIVIHSIKGHFGLAFEMILLNAGTALYVSGIVNNIHNGLELSKYILISGKAYKKLKTIVFFTKCFKKGIL
>NC_018676.1|WP_014943282.1|303163_303982_+|indole-3-glycerol-phosphate-synthase
MKILFNILKYKRNTINVCINKLSLKILRKGFYSNKEQFSNNKFIKSIKNKQYKNQTSIIAEIKRCSPSKGIITETKNIEKLALNYFLNGAVCISILTEKNFFKGSKKYILTVKKLFDIPILFKDFIIDEYQVFEARLLCTDCILLIVSILKLDLLKKLYNLALSIGLDVLLEIHNLLELEVALFSLNAKFIGINNRNLYTFNTSINITISLLKYMPSNVVFVTESGILNVNDFIKLQRFGVNVFLIGEFLLSNNDIFLRTLLDKANKYILTY

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Crispr_ID: NC_018676_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018676_5

331776-331862

Orphan

Consensus_repeat	Method
TAACTACACAAAAACATAAAACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018676_5

>merge|NC_018676|5|331776-331862|CRISPRCasFinder
TAACTACACAAAAACATAAAACACAGCACGTAATATCTAATTACTAACATAACTTTTTAAATTAACTACACAAAAACATAAAACACA

>NC_018676|5|5|331776-331862|CRISPRCasFinder
TAACTACACAAAAACATAAAACACA	GCACGTAATATCTAATTACTAACATAACTTTTTAAAT
TAACTACACAAAAACATAAAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_018676.1\|WP_014895165.1\|335665_336310_-\|MarC-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236814
NC_018676.1\|WP_014895164.1\|334372_335302_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_018676.1\|WP_014895156.1\|325478_326489_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_018676.1\|WP_014895169.1\|341759_342008_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NC_018676.1\|WP_014895163.1\|332871_333459_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NC_018676.1\|WP_014895152.1\|315620_316049_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NC_018676.1\|WP_014895154.1\|316844_317903_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase	unknown	unknown	gnl\|CDD\|223352
NC_018676.1\|WP_014895153.1\|316075_316459_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_018676.1\|WP_014943290.1\|342016_342325_+\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|274061
NC_018676.1\|WP_014943289.1\|340723_341740_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NC_018676.1\|WP_014895159.1\|328502_329276_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NC_018676.1\|WP_014943285.1\|326495_327440_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|270702
NC_018676.1\|WP_014895155.1\|319869_322419_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_018676.1\|WP_014943288.1\|338461_340204_+\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|180578
NC_018676.1\|WP_014895171.1\|342513_342867_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NC_018676.1\|WP_014895158.1\|327447_328491_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NC_018676.1\|WP_014895151.1\|314978_315605_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234971
NC_018676.1\|WP_014895160.1\|329305_330022_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|179108
NC_018676.1\|WP_014895167.1\|340210_340702_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NC_018676.1\|WP_014895162.1\|332239_332860_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|223196

Protein	Function_ID	Function_description	E-value
NC_018676.1\|WP_014895165.1\|335665_336310_-\|MarC-family-NAAT-transporter	gnl\|CDD\|236814	PRK10995, PRK10995, MarC family NAAT transporter.	9.45136e-63
NC_018676.1\|WP_014895164.1\|334372_335302_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	9.82505e-66
NC_018676.1\|WP_014895156.1\|325478_326489_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.23413e-09
NC_018676.1\|WP_014895169.1\|341759_342008_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	2.5862e-32
NC_018676.1\|WP_014895163.1\|332871_333459_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	1.2667e-91
NC_018676.1\|WP_014895152.1\|315620_316049_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.17825e-66
NC_018676.1\|WP_014895154.1\|316844_317903_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase	gnl\|CDD\|223352	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane].	3.61677e-53
NC_018676.1\|WP_014895153.1\|316075_316459_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	5.0145e-65
NC_018676.1\|WP_014943290.1\|342016_342325_+\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|274061	TIGR02273, Ribosome_maturation_factor_RimM, 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing].	1.75806e-19
NC_018676.1\|WP_014943289.1\|340723_341740_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NC_018676.1\|WP_014895159.1\|328502_329276_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	6.8689e-154
NC_018676.1\|WP_014943285.1\|326495_327440_-\|homoserine-kinase	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.0145e-101
NC_018676.1\|WP_014895155.1\|319869_322419_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_018676.1\|WP_014943288.1\|338461_340204_+\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|180578	PRK06466, PRK06466, acetolactate synthase 3 large subunit.	0
NC_018676.1\|WP_014895171.1\|342513_342867_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.48959e-53
NC_018676.1\|WP_014895158.1\|327447_328491_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	1.15666e-177
NC_018676.1\|WP_014895151.1\|314978_315605_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	1.20814e-92
NC_018676.1\|WP_014895160.1\|329305_330022_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|179108	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated.	3.71551e-101
NC_018676.1\|WP_014895167.1\|340210_340702_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	5.79128e-82
NC_018676.1\|WP_014895162.1\|332239_332860_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|223196	COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism].	5.20603e-79

>NC_018676.1|WP_014895160.1|329305_330022_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MLIIPAIDLKNGKCVRLKQGRMYKTTDYGDPLKVVQRFVKIGIKRLHVIDLNGAVLGEPVNKYIINKLIKHYPNLILQIGGGIRNSATIKKYLDVGIKYVIIGTLAIKKPHRLYNLCKKFGKHIILSIDSYKGYVAIDGWKKIANIKSTELAKNVSNCGISSIIYTDISRDGMMQGLNLKKTIKLANFAKIPIIASGGLNNVFDIVNLKTNKNTFILGTIIGRAFYEGKIDLYKALLI
>NC_018676.1|WP_014895159.1|328502_329276_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MSLSKRIIPCLDIDCGKVVKGIKFENTRYAGDPLKIAKFYNEQKADEIALLDIKASYSGKNNTIEVVKKIANEIFIPLTVGGGIKTCKNIRELLNAGADKISINTAAVLNPKIVREASDKFGSQCIVVAIDAKRKTNKNIKEDWEVLTYGGRKNSGISAIDWACKMVKYGAGELLITSIDRDGTKRGFDINLIKTISQRVNVPIIASGGVGNLDHFVEGIKTGKADAVLAASIFHFGEYTIDKAKKYMAKKGISVRF
>NC_018676.1|WP_014895158.1|327447_328491_-|histidinol-phosphate-transaminase
MRMSYKINKLHPYTPGEQPYKKMIKLNTNENPYPPTPKINKLLKNFNYYKLRLYPDPTTSKLRKIIAKVYNVKSEQIFIGNGSDEVLALAFMTFFCQKLPLLMPTITYSFYPVYCKLYNIRYKTIPLQNKFEINLKKMNISNGGIIFANPNTPTGHAISYIEVNKLLDIHNEYVVLIDEAYIKFGSESAIPLIKKYKNLLIVNTLSKAYSLAGIRIGFAIGSTYLIKGLEKVKNSFNSYPIDVISELIAIEAIKDIKYLKKICNYIIYIRETLSKQLKDVGFTVLPSKANFMLVKPNNISAKTMFIKLRNHGILLRYFNNIKKYIRISIGTIQQMNYLIETIKYILK
>NC_018676.1|WP_014943285.1|326495_327440_-|homoserine-kinase
MAVFTKIKKQKLSLFLKSFNIKKQIKFKEVKQGTENSTFFIQTETKKFVLTLFEQGSYKDLTGFIDLLKFLYEHCLPIAMPLIDKNNIIIKKLSGKHALLFPKLYGIHPRTQNIEQCSIIGKTLGRLHSISNKFKLKKQNLRDINWIVLNYYKVISLLTKEDQELMFNQIYLLKHIVTNLPQGILHGDLFRDNTLFNGNNICGLIDFYNGCTGDLIFDLAILINDWCSDQHGNLLEDKYKAILNHYVLERPFTKEEVYILPKMLRLTALRYWISRLLVKNIFPVTHNLRHKEPKKYRDILVSHCKNQYPLYFKN
>NC_018676.1|WP_014895156.1|325478_326489_-|AI-2E-family-transporter
MNNYMLTRATVISLLIYFMGLLLIFPLHLLPCLLSGLFVFELVKAITPLLQTLIPVNKARLSSVVLLGASIVTILSLFFFTVISFILQDIKTPDNLIQRYMLIFDKARHQLPHSVVIYLPESADELSQIINELIYKHVNELQFVFGCAIHTCFSLLSGMILGAIIALQDIPDIKSLTPLTYALLQRSITLSNAFHNVVFAQLKISLVNTLLSSILLLICAPCLNVYIPLTKTLILITFIMGLIPLIGNLISNILIFIVSLSVSLWTAVIALTYLIAIHKLEYFLNARIIGLRINSNAWELLFAMLFFDAAFGFSGLIAAPMYYAYFKCELTNEKVI
>NC_018676.1|WP_014895155.1|319869_322419_+|DNA-mismatch-repair-protein-MutS
MKTKIKKNIYNATPAITQYLRIKNHYHKILLMYRMGDFYEFLFEDAHTASALLNIQLTSKGKYNNKRIPMAGIPCHSLRTYLKRIITAGISVAICEQIKTKKTKKSKLLERKVIRVITPGTLYEDSLLDESKDNLIISIIQKNNKWGISWLEFTTGAFGVLEVDNIHDLRLELDRLNPVELLISRLHKKLPKLPVHKSIIKPISDINFDYNNACKVLFKKLNIKNINKKLNAGVSAAGAIIQYINNNKIYNLAHINHLIFENKKDKLKIDRITKKHLELDVNVNGKQENTLFSVLNNTMTHMGSRLLKKWINNPITNYDLVFSRQKGVEIVLTNNFIDILQKYIKKIGDIERIVTRISLKTAKPLDLIKFKIALNVFPKLKTLLKGLLIVNKNSKSILNYIHKEIFTFPNIALLLDEALVDNPPNSFRYGYVIKSHFNKNLDKLRKIYTNSEKFIKTFENKEKLRTGIIKLKVTYNKLHGLFIEIPKGRKHKYKIPKNYIRTKTLKNSERFYTSELKYFEKRLIESKEKSIKYEKSIFKKLIKVLVGNIPYFIKTSKSLATLDVITTFAERALTLNYCKPIINKNKIGIKIMEGRHPVIESTTNHHFVPNNLFLNHNKSIHIITGPNMGGKSTFIRQIAIIVLLTYIGSYVPAKYAEIGPIDQIFTRIGGYDDLSAGKSTFMIEMHETAKILNTATFKSLVLMDEIGRGTNPTEGLCLAWACLERIIQIKALTLFSTHYFSLTQIAKKFKQITNLHFSASIKSNKVSYIYNIQKGATNNSYSSSVASLANIAQGVINKSNNLIKHFQDHQKSLNKRHTLMKYIKSFKYKDLTRYLKFIKSFFKNLKDMF
>NC_018676.1|WP_014895154.1|316844_317903_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase
MTHKSLFFNKAIDYLITNKDGLYIDCTLGLGGHSKQILNRLSINGLLIALDNDLNTKTLVKNLEFYLDKRFSFININFKYLEIIAKKKHLFGIVSGILLDLGISTYQIKDYKRGFSFFINGPLDMRINNTFGITACCLLNHYKFKQIFKIFKTYGEDEQLYRLTVEICNRRHHFPFKMTLELSNLIKTLKFTNYHIKHQLIKTKPKIQKTYIIHHKSIKIKQKFIKHSKSINTKHIIIKENTTKNKIIKTNNNSINKKKKKHIHPSTKIFQAIRSYINNEIQNLEIVIITSLKLLKTNKKLIIITFNSLESQIVNKVLKTTLNKVNKIYPSIEEVFYNNSSRCSAIFIIQKL
>NC_018676.1|WP_014895153.1|316075_316459_+|30S-ribosomal-protein-S9
MYFYGTGRRKTASARVFLKIGNGKFIINNNTLKKYFHNINLYYLMIQPLELTNNVNTFNIKITVNGGGVKSQAEAIRHGISRALVAYNNNLRYKLRLNGYLKRDSREVERKKIGFKKARKSPQFSKR
>NC_018676.1|WP_014895152.1|315620_316049_+|50S-ribosomal-protein-L13
MKTLNVKINDLKTEWYIINAYNKKLGRLSTKIVHFLLGKNKVIYNSYLNIGDNIIVINADQIKITGNKLIQKKYYYHTGYPGGLRKTTLLELMKKNPEKVIKQSVKGMLPKNSLGRLISKKLKIYKGKQHPHISQQPLELLI
>NC_018676.1|WP_014895151.1|314978_315605_+|ATP-phosphoribosyltransferase
MIEPLVIALSKGRILFKSLSLLKKAGIIPIESVENNRKLLFNTKKKYLNLIILRAIDVPTYVKLGAADMGIVGKDVLLENGSKGLYEPIDFKISKCRLMTAGLIGFNVKNTTRKVATKFVNIAKRYYASKGIKANIIKLYGAMELAPIMNLAEEIIDIVDTGNTLKENGMEPKTLIKNISTRLIVNKTSMIIKYKSINPLIELLISII
>NC_018676.1|WP_014895162.1|332239_332860_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MAIIIIDYGIGNLYSVANAIKKVTKEKVYITNDAKKIKLSNRIILPGQGAIKDCIKELKKKELYWLLKEIINTTNKPVLGICIGQHLLMESSEENKGVFGINYIKGIVKNYKNKNFKIPHTGWNIVYKHKEHQIWNGIKSGSRFYFVHSFYVKTRFKNNVLGVTEYGGKCANVITYYNSVITVQFHPEKSSSLGLKFLKNFINWLP
>NC_018676.1|WP_014895163.1|332871_333459_-|imidazoleglycerol-phosphate-dehydratase-HisB
MSVNKKKKYRTANIYRETKETKIRVYVNLDGQGKINIKCGIELLEHMLDQITNNGQIDLTIKTNVYSHIDHHHTIEDIGIAMGKAFKKALGKKIGIKRYGCSYVPMDESLSRVVIDLSGRPSLHMTKVGKFDLFREFFKGWVNNCKSTLHIDILKGFNSHHQIESIFKSFGISIRKAITKDKRITNKLYSTKGTL
>NC_018676.1|WP_014895164.1|334372_335302_+|RluA-family-pseudouridine-synthase
MKTIKCLLSIRKGLRLDKTSRKLFYITREKIKTFIKKKIRLDGFTVKQNIFLKKFKWISLIHYTKLYIVERVFEPDYFYKNYENNEILVINKRFGLVVHPSKSNIKGTLVNAILSYKKTDFINLPRAGLVHRIDKDTSGLVIIAKNLVSYRDLKTKIKEKSIIREYDVVVLGQLDIGGYINSQIGRNIKYRKKKNIVNDEGKIAITHFRVLERFNTHTYLRCWLETGRTHQIRVHMQSISRAVIGDELYLNNKILPNLNIRQALHAHCLILKHPSKQIYIKLLAKLPKDMTLLLALLRTNKIHTISHTL
>NC_018676.1|WP_014895165.1|335665_336310_-|MarC-family-NAAT-transporter
MFIEYIHSVLFFFITLLPVANPIASTTLLLTLGKKIKAKERKKQIYFATLYVGIIILVCFYAGKNILNAFGVSINALRLAGGIILLYFGFDLLFNVTEKKQITEKNHLQQSHLNISFVPLALPGTAGPGTIALIISSSSSLPSSCLIHFVIWSVTALFTLMFLICLLSANKIFKRIGPSGIDAISRIMGFILISMGVQFIITGFQNMLIVLFHL
>NC_018676.1|WP_014943288.1|338461_340204_+|biosynthetic-type-acetolactate-synthase-large-subunit
MELLSGADMIIRFLKDENVKYVYGYPGGAALHIYDALFRQKVVKHILVRHEQAATHMADGYARASVKPGVVLVTSGPGATNAVTGIATAYMDSIPMVILCGQVVSKLIGEDAFQETDIVGVTRPIVKHSFTIRDTADIPTILKKAFYIASTGRLGPVLVDIPKDMTAPNELYEYIKQNDIKLREKKKNVCNNKEFIKKALKLLLKAKKPVLFVGGGAITGKASHKIREFANIAYLPVVTSLMGIGAYPQSDFQYIGWPGMHGSYEANNAMHNSDLIFCVGARFDDRVTNNTEKFCPNAKVIHVDIDPCSISKTILADIPIIGSAKKVVKELLSKINKSYKDEINLENRKKHLEIWWKCINKWIKNRDGKLYKPVTALSRDLIKPQQVIEAVYKKTKGEAIIATDVGQHQMFAAQYYKFNKPNKLITSGGLGTMGFGLPAAMGVKLSYPHENVVLITGEGSFQMMMQELSTCKQFDISLKIIHLNNGSLGMVRQWQDINYKARHANSYVESLPEFHRLFEAYGLNAITVKVIEELESALETVFINKNELVFLNIYIDPLEHVYPMQKPLGAINDMIISKAE
>NC_018676.1|WP_014895167.1|340210_340702_+|acetolactate-synthase-small-subunit
MRHIISILLENEPGALSKIVGVFSQRNFNIETLNVAHTEDITLSRLTLTTNGDACVIEQIIKQLNKLVDVVKILDLTEVSHIARELMLVKVKAEADDRRAEIKRITDIFRANIVDVTTTDYIIQITGDEDKLDAFINALKGINEVVRTGVSGIPRVWVKVKLS
>NC_018676.1|WP_014943289.1|340723_341740_+|ketol-acid-reductoisomerase
MKIYYEKDCNRSLIKQKRVVVIGYGSQGHAHANNLKDSGVNIKVALYKGSRSWKKAEVAGLKVEVIEKAIIDADIVVMLVPDELQKNIYYRYVENNIKSGAVLIFAHGFNVHYQQIEPRQDIDVVLVAPKAPGHTVRTTYMQGGGVPSLIAIYKDNSGKAKDIALSYASAIGCGKTGIIQTTFKEETETDLFGEQAVLCGGVSALITAGFEVLVEAGYSAEMAYFECLHELKLIVDLIYEGGLGDMRYSISNTAEYGDYVSGHKIINNDTKKNMKTLLENIQNGKFAKDFIIEKKTGFTLLKTKRRINSEHKIEKVGKVLRSMMPLICKNKIIDKNKN
>NC_018676.1|WP_014895169.1|341759_342008_+|30S-ribosomal-protein-S16
MVKIRMTRCGCKNRPFYQINVKDSRSSRDGKFIEKIGYYNPLVISEKRFCINSSRLGYWKNKGAKISNRVLSLLKKNKKDKK
>NC_018676.1|WP_014943290.1|342016_342325_+|16S-rRNA-processing-protein-RimM
MGSIAKSYGVKGWIKVNSYTNQRCNIIDYSRLWILEIKGKNIYLKVKRIRLVHRFFIVQLYGIKTCEKAKTLIGSLIKLQKKLLPNLQKGEYYLYQFKNLRV
>NC_018676.1|WP_014895171.1|342513_342867_+|50S-ribosomal-protein-L19
MSINQLIQAIELEQMKTKIIPKFMTGDTVIVQIKVLEGSIERLQAFEGLVIGKRNRGLNSSFTVRKVTSGIGIERTFKTYSTCIFSIKINRKGKVRKSKLYYLRDLKGKSARINNIS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_018676_2	2.3\|187274\|15\|NC_018676\|CRISPRCasFinder	187274-187288	15	NC_018676.1	252592-252606	1	0.933

1. spacer 2.3|187274|15|NC_018676|CRISPRCasFinder matches to position: 252592-252606, mismatch: 1, identity: 0.933

gagttgtatggaaga	CRISPR spacer
gagttgtatagaaga	Protospacer
*********.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018676_1	1.1\|126958\|32\|NC_018676\|CRISPRCasFinder	126958-126989	32	NZ_KU295134	Escherichia coli strain BK32602 plasmid pBK32602, complete sequence	40502-40533	7	0.781
NC_018676_1	1.1\|126958\|32\|NC_018676\|CRISPRCasFinder	126958-126989	32	NZ_CP020059	Escherichia coli strain AR_0061 plasmid unitig_1, complete sequence	24278-24309	7	0.781
NC_018676_3	3.1\|269677\|31\|NC_018676\|CRISPRCasFinder	269677-269707	31	MN693311	Marine virus AFVG_25M388, complete genome	7585-7615	8	0.742
NC_018676_3	3.1\|269677\|31\|NC_018676\|CRISPRCasFinder	269677-269707	31	MN693313	Marine virus AFVG_25M387, complete genome	29099-29129	8	0.742
NC_018676_3	3.1\|269677\|31\|NC_018676\|CRISPRCasFinder	269677-269707	31	KM359505	Prochlorococcus phage P-TIM68, complete genome	157901-157931	8	0.742

1. spacer 1.1|126958|32|NC_018676|CRISPRCasFinder matches to NZ_KU295134 (Escherichia coli strain BK32602 plasmid pBK32602, complete sequence) position: , mismatch: 7, identity: 0.781

-aacatcacctcttaaatcttaaaagcaacctt	CRISPR spacer
tcacatt-ccttttaaatattaaaagcaaccca	Protospacer
  ****. ***.****** ************.

2. spacer 1.1|126958|32|NC_018676|CRISPRCasFinder matches to NZ_CP020059 (Escherichia coli strain AR_0061 plasmid unitig_1, complete sequence) position: , mismatch: 7, identity: 0.781

-aacatcacctcttaaatcttaaaagcaacctt	CRISPR spacer
tcacatt-ccttttaaatattaaaagcaaccca	Protospacer
  ****. ***.****** ************.

3. spacer 3.1|269677|31|NC_018676|CRISPRCasFinder matches to MN693311 (Marine virus AFVG_25M388, complete genome) position: , mismatch: 8, identity: 0.742

aataactaacagataaccattttatttatta	CRISPR spacer
tgttcaaaacagataaacattttatttatga	Protospacer
 .*    ********* ************ *

4. spacer 3.1|269677|31|NC_018676|CRISPRCasFinder matches to MN693313 (Marine virus AFVG_25M387, complete genome) position: , mismatch: 8, identity: 0.742

aataactaacagataaccattttatttatta	CRISPR spacer
tgttcaaaacagataaacattttatttatga	Protospacer
 .*    ********* ************ *

5. spacer 3.1|269677|31|NC_018676|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 8, identity: 0.742

aataactaacagataaccattttatttatta	CRISPR spacer
cataattatcagataaccattttaaatgtgc	Protospacer
 ****.** ***************  *.*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage