CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017955	Modestobacter marinus, complete genome	6 crisprs	RT,DEDDh,csa3,WYL,cas4,casR,Cas9_archaeal,cas3	0	4	0	0

1. NC_017955

CRISPR-Cas detection and classification

Crispr_ID: NC_017955_1

• CRISPR_ID: NC_017955_1
• CRISPR_location: 15901-16009
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017955_1

Consensus_repeat	Method
ATCCTCGACGAGCTGGCCGAGATCG	CRISPRCasFinder

spacers of NC_017955_1

>1.1|15926|59|NC_017955|CRISPRCasFinder
AGGCCCGCATCGCCGACCTCCAGGCGATCCTGGACTCCCCCGAGCGGCAGCGGCAGATC

CRISPR arrays and Neighbor proteins around NC_017955_1

CRISPR arrays

The CRISPR arrays of NC_017955_1

>merge|NC_017955|1|15901-16009|CRISPRCasFinder
ATCCTCGACGAGCTGGCCGAGATCGAGGCCCGCATCGCCGACCTCCAGGCGATCCTGGACTCCCCCGAGCGGCAGCGGCAGATCATCCGCGACGAGCTGGCCGAGATCG

>NC_017955|1|1|15901-16009|CRISPRCasFinder
ATCCTCGACGAGCTGGCCGAGATCG	AGGCCCGCATCGCCGACCTCCAGGCGATCCTGGACTCCCCCGAGCGGCAGCGGCAGATC
ATCCGCGACGAGCTGGCCGAGATCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017955.1|WP_041794787.1|25202_26990_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl|CDD|270916
NC_017955.1|WP_014738095.1|6127_6628_+|DUF721-domain-containing-protein	unknown	unknown	gnl|CDD|179552
NC_017955.1|WP_014738096.1|6659_7577_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_083869623.1|7459_9364_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224055
NC_017955.1|WP_014738103.1|18374_18518_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014738092.1|2665_3829_+|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl|CDD|236089
NC_017955.1|WP_014738094.1|4953_6135_+|DNA-replication/repair-protein-RecF	unknown	unknown	gnl|CDD|234608
NC_017955.1|WP_014738107.1|21535_22276_+|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|366759
NC_017955.1|WP_014738109.1|23282_23555_-|cell-division-protein-CrgA	unknown	unknown	gnl|CDD|377706
NC_017955.1|WP_014738090.1|208_2059_+|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl|CDD|237605
NC_017955.1|WP_014738105.1|18763_20740_+|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|369272
NC_017955.1|WP_014738106.1|20855_21392_+|peptidylprolyl-isomerase	unknown	unknown	gnl|CDD|223725
NC_017955.1|WP_083869622.1|3952_4921_+|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl|CDD|236582
NC_017955.1|WP_166503614.1|17418_18126_+|DUF3566-domain-containing-protein	unknown	unknown	gnl|CDD|378809
NC_017955.1|WP_166503615.1|22285_23044_-|PH-domain-containing-protein	unknown	unknown	gnl|CDD|371225
NC_017955.1|WP_014738099.1|11156_13193_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl|CDD|235542
NC_017955.1|WP_014738098.1|9497_10901_+|APC-family-permease	unknown	unknown	gnl|CDD|129987
NC_017955.1|WP_014738111.1|24522_25188_+|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl|CDD|181107
NC_017955.1|WP_014738110.1|23710_24490_+|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|377575

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017955.1|WP_014738095.1|6127_6628_+|DUF721-domain-containing-protein	gnl|CDD|179552	PRK03195, PRK03195, DUF721 family protein.	4.37933e-55
NC_017955.1|WP_014738094.1|4953_6135_+|DNA-replication/repair-protein-RecF	gnl|CDD|234608	PRK00064, recF, recombination protein F; Reviewed.	4.09583e-144
NC_017955.1|WP_083869623.1|7459_9364_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.83542e-149
NC_017955.1|WP_014738105.1|18763_20740_+|SpoIIE-family-protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.34824e-37
NC_017955.1|WP_041794787.1|25202_26990_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.65619e-131
NC_017955.1|WP_014738092.1|2665_3829_+|DNA-polymerase-III-subunit-beta	gnl|CDD|236089	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.	0
NC_017955.1|WP_166503614.1|17418_18126_+|DUF3566-domain-containing-protein	gnl|CDD|378809	pfam12089, DUF3566, Transmembrane domain of unknown function (DUF3566). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.	1.21357e-51
NC_017955.1|WP_014738109.1|23282_23555_-|cell-division-protein-CrgA	gnl|CDD|377706	pfam06781, CrgA, Cell division protein CrgA. CrgA is a trans-membrane (TM) protein, first described in Streptomyces as being required for sporulation through the coordination of several aspects of reproductive growth. In Mtb (Mycobacterium tuberculosis ) CrgA is a central component of the divisome, and consists of 93 residues with two predicted TM helices (TM1: residues 29-51; and TM2: residues 66-88). CrgA facilitates the recruitment of the proteins essential for peptidoglycan synthesis to the divisome and also stabilizes the divisome. Reduced production of CrgA results in elongated cells and reduced growth rate, and loss of CrgA impairs peptidoglycan synthesis. CrgA has homologs in other actinomycetes.	4.6178e-41
NC_017955.1|WP_014738090.1|208_2059_+|chromosomal-replication-initiator-protein-DnaA	gnl|CDD|237605	PRK14086, dnaA, chromosomal replication initiator protein DnaA.	0
NC_017955.1|WP_166503615.1|22285_23044_-|PH-domain-containing-protein	gnl|CDD|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.07613e-05
NC_017955.1|WP_083869622.1|3952_4921_+|decarboxylating-6-phosphogluconate-dehydrogenase	gnl|CDD|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NC_017955.1|WP_014738099.1|11156_13193_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl|CDD|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NC_017955.1|WP_014738107.1|21535_22276_+|rhomboid-family-intramembrane-serine-protease	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.53151e-28
NC_017955.1|WP_014738106.1|20855_21392_+|peptidylprolyl-isomerase	gnl|CDD|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	1.59302e-65
NC_017955.1|WP_014738098.1|9497_10901_+|APC-family-permease	gnl|CDD|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.17943e-43
NC_017955.1|WP_014738111.1|24522_25188_+|aminodeoxychorismate/anthranilate-synthase-component-II	gnl|CDD|181107	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II.	1.42961e-120
NC_017955.1|WP_014738110.1|23710_24490_+|DUF881-domain-containing-protein	gnl|CDD|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	3.76798e-49

Protein sequences

>NC_017955.1|WP_014738099.1|11156_13193_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MVAAPQNETAYSGSSITVLEGLEAVRKRPGMYIGSTGERGLHHMVWEVVDNAVDEHLAGWCDTVRVTLLADGGVRVEDNGRGIPVDMHPVEKRPTVEVVLTILHAGGKFDGKSYGVSGGLHGVGVTVVNALSTALDVTIWTKGTEWHQHYTEAKPGKLDEIGPTDKRGTAITFWADPSIFETTTFSFDTISRRLQEMAFLNKGLTIVLRDERPGQGKADTGLAEETSIVEEAPAPGHEDEAFEPTEVTYVYESGLVDYVTYINRRKSAIHRSVISFSADGVGKNDTAMSLEVAMQWSDAYSESVHTFANIINTHEGGTHEEGFRAALTSIVNRYAKEKGILKAKDDALTGDDIREGLAAIVSVKLGDPQFEGQTKTKLGNTEVKGFVQKVCNDQIGHWFEANPAEAKVIITKAASAARARRAAQDARKLARKSLLSVSGLPGKLSDCRSTDPRNSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSMITAFGTGIHDEFDLAKLRYHKIILMADADVDGQHITTLLLTLLFRFMRPLVEAGHVYLAAPPLYKIKWGGKVGIEYAYSDRERDALLKAGAEAGRKIPKDDGIQRFKGLGEMDAKELWETTMDPDTRILRQVTLDDAAAADELFSVLMGEDVEARRSFITRNAKDVRFLDV
>NC_017955.1|WP_014738098.1|9497_10901_+|APC-family-permease
MADTVRTETGQPSLKRVMGPGLLLLFIVGDILGTGIYALTGQVAAQVGGVVWLPFVVAFLVALVTAFSYLELVTKYPQAAGAALYTHKAFGIHFVTFLVAFTVMSSGITSASTAARAFSANAAEVFGLGISDGIGITLIGLAFMGLVALVNHRGVGESVKANVVLTCVELTGLLIVIGVGLWALGVGEGDFSRVTEIETGDRSLVGGVIAATGLAFFAMVGFEDSVNMAEECHEPKRIFPKVLLAGLLATGLIYVLVSVSAIALVPADALSQGDTPLLQVVEAGAPGFPLGVFGVITMFAVANSALINMLMASRLVYGMSNQGVLPPLLGKVHPTRRTPTTAILFTTALAFGLITFVGAVPALGGTTALLLLGVFTVVNIAVLVLRKDEVDGDHFRTPTVLPVIGALACGFLATPWAGRPSEQYRIAGILLGIGVLLWVVTVLVQRRTGQAAPPLDPDRFTKGGPVN
>NC_017955.1|WP_083869623.1|7459_9364_+|ATP-binding-cassette-domain-containing-protein
MVRARLRGRRPARRQPAAADRAPRPAAGRGRGRPGGRSLTSDEGATAEQPLPSAGLRELLPLLRPHRRALLGAAVLSLVSAAAALAQPALVGQVIGAVGSGGAVLPGVLALVVVLVAASVLGAGQQYLLQRTAEGVVLSTRRLLTDRLLRLPVAEYDRRRTGDLMSRVGSDTTLLRATVTSGVVELAGSVVVGVGALVAMALVDAWLLLVTVVAVGVGVTTAVLASRRVRTLSRQAQEQVGAMSAAVERALSAVRTIRASGATEREVATVGVSAERAFTAGVQVARLQALVSPLGSIAVQGAFLAVLGLGGYRVATGSIAVADLVSFILYLFLLVMPLGQLIGSYTQLQTGLGALARVQEVLALEPEHDDVPERPAAGGAVAVLRTPRAGDPVPLLELDGVGFGYPDGTPVLRGVSFAVPAGSRTALVGPSGAGKSTVLALVEGFYPLLEGSVRWAGTDVRELPRAALRARMGYVEQEAPVLAGTVRENLTLAAPDAGDDRLWQALADVGLTGVVRRSPRGLDVAVGDDGVLLSGGERQRLAIARSLLSRPALLLLDEPTASLDARNEGLLRDTLAAAAADRALLVVAHRLSTVIDSDQIVVLDGGRVVAVGTHDELVDSSPLYRELATAQLLV
>NC_017955.1|WP_014738096.1|6659_7577_+|hypothetical-protein
MSTPRDRDGDAFDDGRTDGPAGWQEPAHLGSGAGKDTPDSWQPPGWDLPAAEPDRPGTEPPAAAQQPQQQPWQPPAADQRTSDQPPGAERRRGLGGLFGSRPAPGDAPELPIMIPPADPWGTQAWAMSVGWVLSDGTAPEDADLTALAKTAPVRPGKEDRAGHVLRGRGNGLDLAAFDIVSPYGRQEVVTHAVTAAPVLGSVPAFRLSPARMWRHGVGGLVQVPSPDPEFERRWVLLAAEDGPQVRRLVEDPVVRQLLLGSDDGDELWSALGFVAAVRPDANRPQLIEHHARLLAAVVGALAAAA
>NC_017955.1|WP_014738095.1|6127_6628_+|DUF721-domain-containing-protein
MAEERPARPSDIARAALEAARAASAARPQPTRRRVAGPRRRWTGPGPGADDPQLFGTLVDALVTQQDWTARTKVGAVFGRWDTLVGPDIAAHCRPESLNEGELLVVAESTAWATQLRLLAPSILGRLRAGVGGDVVTKLRVVGPTAPSWKKGPRTVRGRGPRDTYG
>NC_017955.1|WP_014738094.1|4953_6135_+|DNA-replication/repair-protein-RecF
MYLRHLQVGQFRSWESADLALTPGPTVLVGRNGQGKTNLVEAVGYLATLGSHRVSADAPLVRHGATQAVVRAALRKDERELLVEVEINPGRANRVRVNRAPLTRPRELLGLVKTVLFAPEDLALVRGDPAERRRFLDDLLVSRTPRLAGVRSDYDRVLKQRNALLKTAKLARGNALATLDVWDGHLTELGGQLLAARLRLVADLAPYVADSYAGVAGPGADRAALGYSSTVPLAGDGSPVDPARALPGAEELSAALRDQVGERRKDEVDRGITLVGPHRDDLVLHLGPAPAKGYASHGESWSFALAVKLACFALLRAEGDDPVLLLDDVFAELDAGRRSALAEVAGSAEQTLITAAVAEDVPAALRGTRVQVAAGTLTVLTDDVPVDQEVHGG
>NC_017955.1|WP_083869622.1|3952_4921_+|decarboxylating-6-phosphogluconate-dehydrogenase
MESEEQDVQLGLVGLGKMGGNMAERVRRAGHEVIGYDRSPGARDVDSLQGLVDALEAPRVVWVMVPSGDPTRSTVRELGELLSPGDVVVDGGNSKFTDDKVHADELAEKGIGYVDAGVSGGVWGLQNGYALMVGGTAEDVAKVQPVFDALKPPAPHDEQGNEMPGVGFVHAGPVGAGHFAKMVHNGIEYAMMQAYGEGYELLAAVDLVEDVPGVIASWTQGTVIRSWLLDLLVKALQEDPGLDKITGYAEDSGEGRWTVEQAIEHAVPMPAISASLFARFASRQDDSPTMKAVAALRNQFGGHSVQSVDSRGNNPPVSEKPA
>NC_017955.1|WP_014738092.1|2665_3829_+|DNA-polymerase-III-subunit-beta
MKFRVAREVLAEAVAWTARSLPPRPSVPVLAGILLEVEGSQLSVSGFDYEVSARSEVDVQASEGGRTLVPGRLLAEITRALPPHPVDVVAEGARLAISCGNAKFSLPTLPVEDYPSLPSLPSTAGTVDSDAFAEAVSQVAVAAGRDDTLPMLTGVRLEIEDDLVTLAATDRYRLAVREFAWRPESSGLSAAVLVPARTLADAAKTLTSGPEVTLSLSSGGSGEGILGLSGKDRQTTTRLLDAEFVKYRAIMPSESASFATLPVGLFTDAAKRVALVAERGTPLRCEFTPGQVTLRAGGTDDEGQAEERCDVEFDGDPLTIGFNPTFLLDGLAAVHTDRARMDFTTALKPAVLSGVAEPTSDEAGGGGKPAERGGSYRYLIMPVRLPG
>NC_017955.1|WP_014738090.1|208_2059_+|chromosomal-replication-initiator-protein-DnaA
MADSTVDLATVWDQIRERLSTSLSPQQNALLNLTRPLGLVEDTAVLAAPNEFTQTVLESRMRMQLAEALSAEFGRAIRVAVQLEDVPVTPSAAPPSPVRRVEAPDDRRWALADRERLAPVSPAPDWSADERLAQEQLAQDRLAHDRASAELAARERAAHDRAAEDRADRDRVDDGRSAFGVRTDAARAEAWLPESGDGRDWSRGSAAEEGPGEWQAADSGPGVGVQARLAPWDRESDDAGSRGPDTDRRPAERGSRGQGAVPLFADRRPAGLDPGLNAKYVFDSFVIGNSNRFAHAAAVAVAEAPARAYNPLFIYGDSGLGKTHLLHAIGHYAARMFPNVRVRYVSTEEFTNEFINLVHSGRAEDFRRRYRDIDFLLIDDIQFLERAERTQEEFFHTFNTLHNASKQIVITSDRAPKKLTTLEDRLRTRFEWGLITDVQAPDLETRIAILRKKAWGERLQAPDAVLEFIASKVQTNIRELEGALIRVTAFASLNKQPVDLALAELVLKDLISDEQGPQITAAIIMAATAEYFSVTMEELQGSNRSRTLVNARQIAMYLCRELTELSLPRIGASFGGKDHTTVMHAVKKITGLMSERRATYTQVTELTARIKSRARQ
>NC_017955.1|WP_166503614.1|17418_18126_+|DUF3566-domain-containing-protein
MPDGPAAEPAATPAKAPATGTDTPAPPAAHPVTPLGPSANPANAAPPVTGTNRAVRAGGPLPVDATQAVTVPPAAARPADAPSRPAAARTPDAERPAAEATGRTGKVRGVSRGPRRARLQLRHVDTWSALKISLVVSIALFFVWMIAVAVLYGVLGGLGVFDTLNDLIGQLSSSSGEAAGTGGDVISGTVVFGGAAVIGAVNIVLLTALCTVAAFVYNLCSDLVGGLEVTLAERD
>NC_017955.1|WP_014738103.1|18374_18518_+|hypothetical-protein
MLKKLAMAALAASAVVAVRKRAAGKGEADLWAEATSGPDAVSTPRTS
>NC_017955.1|WP_014738105.1|18763_20740_+|SpoIIE-family-protein-phosphatase
MEQDSTPPSDGAPLGELVTMRAVLDALPVFMVAVEGPELRVVAMSASVRALAERSEWLGTPLAEVYPELAVQGVLELYAEVYRTGQPFSAPEWRLELAGPGGSGVAELVVHWTSVPWRWPDGSVRGVIGVAHDVTEQVRARERAEQEAAESGRRYERARDVVSELQQALLPTAVPVLPRFDIAARYLVAGAEQSAGGDWFDVRPLAGGRVGLAVGDVVGHGVAAAAVMSQLRAVLGDALETTSGPAAAVDRLERFAESLPGARSATVVVAVIDPAAGTLEYLTRGHPAPVLVDASGTGRQLLGSGGGPLGSDGGSVQRTQLADGDVLVLFTDGLVERAGRSYTAGLDELTRLAEAASVGQLWPTGTSPSAVERICTDAVELLTRGSLADDVTVLAVSLQPPVPPLRTHVRASAAELPLLRAQLRGWLAALPPDPADQLALELAVGEAVDNAVEHGFHHVSPGTVLLALRLGEDGRVHVRIDDDGIWRPPASPGSDRGRGLALIGSLGEDLVVDGQPTGTTVTFSRRLSRPVSTTPTRAVPSAAPPADDGRFDTLVVGEPPVLRVRGPVDGLAAERFRAELAGLSRGGSVPLTVDLTEVSHLTSTGVAALADLLRPADREHVPVLVAPTGTPAAFVLDLVGLPRQATGPVPGGEPGDRP
>NC_017955.1|WP_014738106.1|20855_21392_+|peptidylprolyl-isomerase
MTEQTAPARRAVLHTNRGDITVDLFPDHAPKTVANFADLAEGAKEWTHPKTRAKTTDKLYDGTVFHRVIDGFMIQGGDPLGQGTGGPGYQFGDEFHPDLSFNRPYLLAMANAGPGTNGSQFFITVGPTPHLNRKHTIFGEVADDASRQVVDAIATTPTSRGDRPVEDVVINSVEVQRS
>NC_017955.1|WP_014738107.1|21535_22276_+|rhomboid-family-intramembrane-serine-protease
MNPAAVGFQCPDDVRAGNAGVRQPRRTGGLQRAGRRWGPVTLTLIGINVAMFLLTAVLTGIGGQDPLQNYRNELFQDLAQVPVFVQIGDWWRPFTAAFLHYGVLHLGLNMLSLLVFGSELERLLGRGRYLVVYLVSIAGGAAAIQLLGTPFGQVAGASTAIYGLMGAFGVVLVHQKQDLRGLLVLLGINLVISFLPGVSLIGHLGGLVAGAAAAAVLVSTRRRPPLAIGGIAALSVVLLALVYTHF
>NC_017955.1|WP_166503615.1|22285_23044_-|PH-domain-containing-protein
MWSVDRRHRAADLGRYRRCDCWDGKGTGVTTPLEVRPQLCTHLWVNVDNQLLRNRVPASYYPSAPNANEQRDGLVAGGHRRVVDIRPGASPARPDGAAGDSGDGAVDRAVPGGPWHAGDVQWGPRTGEVVATALAGLGLALAVLVVDPVGRVLVGGAALLLLGLALRDAVLRPRVRTGPDGVTVRALAGRTTIPWPHVRARVRVQRRWGLQARTLELEDRTDDAVLVVLGRRELGTDPGTVAEALQTGGAAG
>NC_017955.1|WP_014738109.1|23282_23555_-|cell-division-protein-CrgA
MPKSKVRKKSVYTPPEGVLPSRAARARAAEPSPRWYAVVMVALMLIGLLWIVVYYVAGDRIGFMVSLGAWNFAIGFGAMVAGLVMSMRWR
>NC_017955.1|WP_014738110.1|23710_24490_+|DUF881-domain-containing-protein
MSRSVRWRRLSLWTVLVPVVALVAGLLFATSSRTALGTDLRAGESSQLPGLIQQRDAAVARQQEELARLQQQVQALTDQAASRNGEVAAAQAEGAQGTTSAGLTALQGPGLSVTLDDAPPEPNGAQPSDVSPDNLVIHQSDVQGVVNALWAAGADGVAIMGQRLIATSAVICVGNTLLLQGRTYSPPFVVTAVGDAAAMRQRLAASYEVQLLKAAVDQWGLTYQVADQREVSLPAYEGPLDLQYADAAPPDEGTEQGGG
>NC_017955.1|WP_014738111.1|24522_25188_+|aminodeoxychorismate/anthranilate-synthase-component-II
MATLDAPRPVLVVDNFDSFVYNLVQYLGQLGVPSVVRRNDAVTIAELADLDVAGVLLSPGPGTPTDAGVTVPMVRAAAAAGVPVLGVCLGHQAIAEAFGGVVGRAPELLHGKTSQVVHDGVGVLAGLASPFTATRYHSLAVEADSVPAELEVTGRTPSGIVMALRHRELPIEGVQFHPESVLTEGGHQLLANWLTSCGLAPDPARLAAAEAAAHRLTVATV
>NC_017955.1|WP_041794787.1|25202_26990_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MTTPSVLGERYEIGGVLGRGGMAEVHRGRDLRLGREVAVKVLRQDLARDPSSQVRFRREAQAAASLNHPAIVAVYDTGEDRGPAGATPYIVMEYVEGETLRDVLRREGPLSPDRAMSLTADICAALDFSHRNGIVHRDVKPGNVMITPQGTVKVMDFGIARAVSDSAATMTSTAAVIGTAQYLSPEQARGEGVDARSDVYSAGCLLYELVTGTPPFTGDSPVAVAYQHVREDPKTPSSINPAIPPELDAILLKAMSKNPANRYQSAADMRADLLRAVAGQRVEATPVMSDAEKTTIIGAAAGGLGYDDGWDDEDARKRRRNRVIALVVGALVLIGGAVAIALALTSGNGDDAPPAVTQVTVPDLIGRTQDEATAAITAAGLTVGTISREASTEAQKDTVLSSDPASGEKADPQAPVRLVIGGGPNTIAVPNVVGQAQDAAVDALENAGFTGSISTQQERSLAPEGQVISVDPAAGSQAAPDTRITLSVSTGSIELPDVRGLTESAAREQLVAAGIDNGNIETTNAESDAVAAGNVVDSDPGPRSAVGQGDVVTLLIAVPIPSEAPTTPTTPATTTAPTTAPTTPPTTTALPSPTG

Crispr_ID: NC_017955_2

• CRISPR_ID: NC_017955_2
• CRISPR_location: 84998-85121
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017955_2

Consensus_repeat	Method
TGCCCCCCACGACTCGCAGGCTCGCCGCGGGCCCCTGCA	CRISPRCasFinder

spacers of NC_017955_2

>2.1|85037|46|NC_017955|CRISPRCasFinder
CGAGGGCCGCGGGACGCTGCGACGGGCCGGCTGAGGGAACACCCCC

CRISPR arrays and Neighbor proteins around NC_017955_2

CRISPR arrays

The CRISPR arrays of NC_017955_2

>merge|NC_017955|2|84998-85121|CRISPRCasFinder
TGCCCCCCACGACTCGCAGGCTCGCCGCGGGCCCCTGCACGAGGGCCGCGGGACGCTGCGACGGGCCGGCTGAGGGAACACCCCCTGCCCCCCACGACTCGCAGGCTCGTCGCGGGCCCCTGCA

>NC_017955|2|2|84998-85121|CRISPRCasFinder
TGCCCCCCACGACTCGCAGGCTCGCCGCGGGCCCCTGCA	CGAGGGCCGCGGGACGCTGCGACGGGCCGGCTGAGGGAACACCCCC
TGCCCCCCACGACTCGCAGGCTCGTCGCGGGCCCCTGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017955.1|WP_083869626.1|86722_87748_-|nucleoside-hydrolase	unknown	unknown	gnl|CDD|224868
NC_017955.1|WP_166503618.1|85603_86095_-|ATP-binding-protein	unknown	unknown	gnl|CDD|340413
NC_017955.1|WP_014738161.1|81861_83490_+|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|183199
NC_017955.1|WP_014738172.1|93250_93691_-|ATP-binding-protein	unknown	unknown	gnl|CDD|340413
NC_017955.1|WP_014738167.1|86186_86489_-|STAS-domain-containing-protein	unknown	unknown	gnl|CDD|132914
NC_017955.1|WP_014738156.1|75835_76174_-|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014738163.1|84262_84610_-|PRC-barrel-domain-containing-protein	unknown	unknown	gnl|CDD|273470
NC_017955.1|WP_166503617.1|83497_84259_+|NYN-domain-containing-protein	unknown	unknown	gnl|CDD|350235
NC_017955.1|WP_014738175.1|96105_96873_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl|CDD|223692
NC_017955.1|WP_014738165.1|85198_85600_+|ATP-binding-protein	unknown	unknown	gnl|CDD|379324
NC_017955.1|WP_166503346.1|78777_80955_+|hypothetical-protein	unknown	unknown	gnl|CDD|223021
NC_017955.1|WP_014738170.1|88776_90597_+|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl|CDD|223482
NC_017955.1|WP_014738160.1|81430_81820_+|SRPBCC-family-protein	unknown	unknown	gnl|CDD|176871
NC_017955.1|WP_014738154.1|73603_75523_+|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|369272
NC_017955.1|WP_014738174.1|94542_96102_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014738158.1|76714_77998_+|competence/damage-inducible-protein-A	unknown	unknown	gnl|CDD|234789
NC_017955.1|WP_014738173.1|93852_94539_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NC_017955.1|WP_193375769.1|71956_73507_+|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|270916
NC_017955.1|WP_014738155.1|75503_75839_-|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_166503347.1|90634_93244_+|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|369272

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017955.1|WP_083869626.1|86722_87748_-|nucleoside-hydrolase	gnl|CDD|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	6.26205e-101
NC_017955.1|WP_166503618.1|85603_86095_-|ATP-binding-protein	gnl|CDD|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	8.8768e-11
NC_017955.1|WP_014738161.1|81861_83490_+|acyl-CoA-dehydrogenase-family-protein	gnl|CDD|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	5.76077e-162
NC_017955.1|WP_014738172.1|93250_93691_-|ATP-binding-protein	gnl|CDD|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	6.14555e-13
NC_017955.1|WP_014738167.1|86186_86489_-|STAS-domain-containing-protein	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.83656e-14
NC_017955.1|WP_014738163.1|84262_84610_-|PRC-barrel-domain-containing-protein	gnl|CDD|273470	TIGR01150, Reaction_center_protein_H_chain, photosynthetic reaction center, subunit H, bacterial. This model describes the photosynthetic reaction center H subunit in non-oxygenic photosynthetic bacteria. The reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reaction center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in the form of NADH. Ultimately, the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is an organic acid rather than water. Much of our current functional understanding of photosynthesis comes from the structural determination and spectroscopic studies on the reaction center of Rhodobacter sphaeroides. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0.000256363
NC_017955.1|WP_166503617.1|83497_84259_+|NYN-domain-containing-protein	gnl|CDD|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.13101e-07
NC_017955.1|WP_014738175.1|96105_96873_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl|CDD|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.49149e-17
NC_017955.1|WP_014738165.1|85198_85600_+|ATP-binding-protein	gnl|CDD|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	3.56195e-17
NC_017955.1|WP_166503346.1|78777_80955_+|hypothetical-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	5.8277e-12
NC_017955.1|WP_014738170.1|88776_90597_+|gamma-glutamyltransferase-family-protein	gnl|CDD|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	4.79608e-136
NC_017955.1|WP_014738160.1|81430_81820_+|SRPBCC-family-protein	gnl|CDD|176871	cd08862, SRPBCC_Smu440-like, Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.	0.00700727
NC_017955.1|WP_014738154.1|73603_75523_+|SpoIIE-family-protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.37835e-41
NC_017955.1|WP_014738158.1|76714_77998_+|competence/damage-inducible-protein-A	gnl|CDD|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	5.43454e-157
NC_017955.1|WP_014738173.1|93852_94539_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.7656e-52
NC_017955.1|WP_193375769.1|71956_73507_+|serine/threonine-protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.79684e-103
NC_017955.1|WP_166503347.1|90634_93244_+|SpoIIE-family-protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	4.43188e-36

Protein sequences

>NC_017955.1|WP_014738163.1|84262_84610_-|PRC-barrel-domain-containing-protein
MFPAENIRDWRTKNVVDPDGSKIGTLESVYVDTTTDLPFFAAVVTGMIGRHKLTFVPLTNATVAPDHIRVTVSKDLAKNAPSIDTDGELSVEEEPAVFEHYSLPYTAGVRRLARR
>NC_017955.1|WP_166503617.1|83497_84259_+|NYN-domain-containing-protein
MGGRRGRRRATSPTVSPVDRHTDPVTETYAVETTSDDGYDADGVRPALDLLVWDAPNIDMTLANVIGARPTAASRPRFDAIAAWFVDGAEDPGAPVQPEVEACVFANVPPQHATSLQRWVEALRSFGYAVFARPKLQPDDDIDQSMLDHISVRAHSHQLRRLVVFSGDGRNFAEPLEDLARSGTEVVVVAFSEVAGYAITSDLLHFVDIEDVPGAFAVPLDRVRLDALPVDGAWLRPTKSLRDAAGAFTARRG
>NC_017955.1|WP_014738161.1|81861_83490_+|acyl-CoA-dehydrogenase-family-protein
MSVTHQVTNQVPPLVGHDPIAGDAALSEACLRHADAGALASLAGLGALAGSEQAQEWGRLANENPPRLRTHDRYGHRVDEVEFHPAWHELMGAAIGHGLAGAPWADQAAGDRHAHVRRAVGYLGWTQVEMGHGCPVTMTYAVVPALRRTPDLAEALEPALTSRVYQFGLTDPQTKRGLVAGMGMTEKQGGSDVRANTTTATARSDGSWSLTGHKWFTSAPMSDLFLVLAQTGEGVSCFLVPRVLPGGERNAFALQRLKDKLGDRSNASSEVEFDGTTGWLVGEPGRGVPAIIEMVATTRLDCVLGSAATVRAALTQAVHHARHRRAFGALLAEQPLMQNVLADLALESEAATALAVRLAAAQDAGERDYLRLAGAVAKFWVCKRAPVAVAEALEVLGGNGYVEESGMPRLYRQAPLNSIWEGSGNVIALDVLRALGAGSSSLAAVTAELDAARGADTRYDAALDRLARELADPEQLPLRARRIAGRLALCLQAALLLQHAPAAVADAFCATRLGGDWGAVLGTLPPGTPVAELVDRAAVVPA
>NC_017955.1|WP_014738160.1|81430_81820_+|SRPBCC-family-protein
MTTLTLHATGPVAPAEAWDRYLHPARWSSWAPQILGVDTAADRITQGVTGRVRGPLGVTVPFVVDEVDDGSRRWRWTVQVGPARMTLLHWVTSGPDGGTTTGLRVRGPLPLAAGYAPAALVALHGLVRS
>NC_017955.1|WP_166503346.1|78777_80955_+|hypothetical-protein
MTVPDVPLPPVTVPDVPLPPVAVPDVPLPPVAVPDVLLPPVAVPDVSVPDVPVPDVSVPDLPVPDGDQPGPSTEPAPVVSLPPGVPDVIVPPMPLPDVPDLPVPPVSVPGVSLPPVVPDVVVPPVSQPDLPDVPGFPDLPLPPVVPDVVVPPVSQPDLPDVPGFPDLPLPPVRVPPVALPHVPDVVLPPVVVVPPFSLPDVPDVPDLPVPPVDVPVVPDLPLPPVRVPPVALPHVPEVVLPPVVVVPPFSLPDVPDVPDLPVPPVDVPVVPDLPLPPVRVPPVALPHVPDVVLPPVVVVPPVVVVPPFSLPDVPDVPDVLDLPVPPVRAPPVALPHVPDVVLPPVVVVPPVVVVPPFSLPDVPDVPDVPDLPLPPVRVPPVSLPDLPDVPGLPMPPVSLPDVPEVVLPPVVVVPPFSLPDLPDVPDLPVPPVEALPVVPVVVVPPLPLPDLPVIVVPVVSGPTPVAVPDLTVPGVVLEPAVAVPVVAVPVVAVPVVAVPVVEVPVVEESVVPAPTTPVDADPPVVAPVEAVTVEAVPATTPVTADPAAPATEAATPAAAASVQPATTAAAAPTSEVPSSGSTSVTAPVVVPAAGSSGTASVLEVSDLCVVADSADPGSTDRSSTRSGPPSHAQRTAPVPAAPASPAAPHDPPAPAPLPAPAPTAPATPVPPTPTSPGGANWSPLGALHATLPTLPVQPALADLVSTAPVRTLQDGLLPEPSSSPD
>NC_017955.1|WP_014738158.1|76714_77998_+|competence/damage-inducible-protein-A
MAVRAGIVVTGTEVLTGRVADRNGPWLAEALRARGVDVGSVVVVGDRPEDLHAALAFLTGNGLDLVITTGGLGPTADDLTAAVVGEFQDRPSEVDPALEERIAGVVARLSARRGWLMDPEATAAGVRKQALVPVGATVLEPVGTAPGLVVPAAEGRSGPPVVVLPGPPSELQGMWPAALAADPVQAALDGATELRQQTLRLWGTPESELAATLRRVEDQLTGLEVTTCLRDGELEIVTRYASDAEPAYARLTEAISSDFPDTLFSTGPTPDALVAGALVDRGWRVAVGESCTGGLLTARLTAAPGSSAWVVGGVAAYANSAKEQLLGVPAATLAEAGAVSPEVALALAEGARNRFGADLGIGVTGIAGPGGGTADKPVGTVHLAVVGPAGTLTKAVVLPGSREAVRQRTTTLAVHLLRQLLLGGPPA
>NC_017955.1|WP_014738156.1|75835_76174_-|hypothetical-protein
MLSLGLAVLAVLLLELGLALDFESASLWELVPTWSALATVGALVVLVAPLGALTGRLPARTAWRTGAVGAAALATFWVLVALPIAPTDRGFWLTAALAAAAAALWSAPGRTE
>NC_017955.1|WP_014738155.1|75503_75839_-|hypothetical-protein
MSSPRGWYLAAGGLAVAALGLPWTGQLPGAASPARVAVVAGLLLAVGGLRTGRDSLLRAALGAAVVGVLLGGVQASPGRLALAAAAACLVLGCRAAGRRLLPARQVRGSAG
>NC_017955.1|WP_014738154.1|73603_75523_+|SpoIIE-family-protein-phosphatase
MVTRADEPGGATGGRAGGSGEPGGEVDHTAVFAALPTPYLVLTPDLVIADANPAYLARTGRELAELVGRDVFEAFPGNPNEVDPDGGVAKVRASLERARDTGRPHTMSVQEYDIADGSGGFTKRFWSLISVPVPDGQGGCRYVLQRAEDITDYVRQQAQAAHPAGTGKKWQRRVLEVESDLFTRAAELSASRAAEADTARRLAALSGVALALGRAETLDDLARVVTQKGLVALAAHGGAVAVCEDGDLHLVLSEGISPLGVGPDTVLPLEAPYPGCVAARTGARVLLPDRASSEAFSPELAELVAATGVEAWAAVPLESGDRRIGSLSVGWTTPTTLDPADLELLLALAAQCAQTVERIRAREAEQARNDAVRGIAEVLQRSLLTDPPEPDHLEVAVRYVPAATDAQVGGDWYDAFLLGDGRTALVIGDVTGHDRYAAAAMAQVRNVLRGVAHCQQGSPATVLTALDRAMRDLAVDTLATAVLAVVEQRPEDADRGVRVLRWSNAGHPPPMLLSPEGRVTVLEQDPDLLLGLDPSAPRADHVQELRPGATVLFYTDGLIERRGVALDAGISWLAGVLAAGAELSVDELCDRLLGELAGAVEDDVALLVVRTHPEDRRRPPEAGPARVPAGHSAVSPPSP
>NC_017955.1|WP_193375769.1|71956_73507_+|serine/threonine-protein-kinase
MGQVWRAHDQLLGRTVAVKVLRSEYTGDATFLARFRAEATHAAALSHPNIAAVYDYGEVPAIDGSGEHLAYLVMELVEGESLSTLLARVGRLGTDRTLDVLRQTASALAAAHEAGVVHRDVKPGNVLVRWDGTVKITDFGIAWSAGSVPLTQTGQVVGTASYLSPEQAAGAHASTASDVYALGMVGYECLAGRRAFDGENSVTIALRHLRDTPDPLPADVPAGVRTLIEHATVKDPVQRYPDGAAFVAAVDELLAGRQLPPVQHTDTQSFWLLPDAAALAGASTASASRPPARSGRAGRLLVPLVALLVGAGVAAAVQQAVLPTDPATTAAAAATGPAAPTPEALVLEAGDYLGRPVDAVAAQLEALGLVVQRETVSTGDADPGTVVDVAPLSVRLEAGDTVLVSYAVAPQTRSSTVQPAPRTPAEAVVAPSTKAAPTPTAVPTPTPTPSATPTPTATPTPTPTETSAPTTTSQAPETDDGEGDEDDDHGWPGGGSPAPSSTPTAPPTPTATPVQG
>NC_017955.1|WP_014738165.1|85198_85600_+|ATP-binding-protein
MVGLQGAGKTTWVAEHLAGTHVVVSKDHWPNARHREARQRRVVAGLLAEGASVVVDNTDPSPAERAALVELAVAAGVPARAVFLDVPLETCRRRNEARSGRARVPDVGLFSTAARLVPPSTAEGFADVRVVRG
>NC_017955.1|WP_166503618.1|85603_86095_-|ATP-binding-protein
MTVGALVWPSAAVPSEEGDVWRWELPTVHDASRVRMDLRARLAHPSLASRSTEDAREGLLLVFEELSSNALRHGGGSVVALIVALPTGWLIVLTDGAPESPPQPAVDRDPAYGGMGLPMVAQLSIDYGWCSEPGRKHVWARLPSGFSSAEALPRPRSSSGPAA
>NC_017955.1|WP_014738167.1|86186_86489_-|STAS-domain-containing-protein
MAGELDAAAGPLLQQSLLDALRRAGRLLTIELSGVTFFGSAGVTALVWVSQHPEAAGKHVRVVATSRIVTGPLELTGLLERLDVEGMPEGSARPGSTPPG
>NC_017955.1|WP_083869626.1|86722_87748_-|nucleoside-hydrolase
MTSAPGATHRRVARVWWDVAVAATPLVIDTDPGIDDALAVLLALASPEVDLRLVTTVHGNVDLAQTTENALRVLHLAGRSDVPVAVGAATSLVVPQAERAGHVHGAAGLGGVVLPPSPASVDPRPAVVALADLLMTSDEPVTVAAIGPLTNIALLLAVYPDAAARIGRLVVMGGSASRGGNVTAAAEFNVWADPEAAAVVFRAGLPTVMVGLDVTLPTVLTEAGIARFAAAGEVGARAAAILRQYLDHARSSYGTDGVVVHDALALTEAIVPGTLRTVRRDVVVDTGPGAARGQTLVDRRTVSASPAAIAVAEGVDSPAAVEFLVSRLVAYGDGAATPAGV
>NC_017955.1|WP_014738170.1|88776_90597_+|gamma-glutamyltransferase-family-protein
MFTTRPELAGTFGMVASTHWLASAAGMATLEAGGNAFDAAVAAGLTLQVVEPHLNGPGGEVPVLFARSPRAATGAGEPVVLSGQGVAPAGATIEAYSQLGLDLVPGTGLLAATVPGALGAWLTLLRDHGTLPLDAVLRFAIEYAEHGHPLLPRVAATVASVSEHFRSHWPTSAATWLAPDGAPPTAGRLFRNPVLASTYRRLLDAARGPSREAQIDAALAAWYQGFVAEAIDEFSRSPVMDDSGRPHRGFLTGADLAGWRPTYEPPVTLDWRGWTLAKAGPWSQGPALLQALAMLDGHPAAGAGAGYVSGTADADLVHASVEAVKLAMADREAWYGDTAQAPVDDLLSATYTEHRRALISDRASTELRPGSPGGRPPRLPAFVTDTSARLRPSAGTLAGVGEPTVDTRGTTRGDTCHVDVVDRWGNLVSATPSGGWLQSSPTIPSLGFALGTRAQMFWLEPGLPNSLLPGKRPRTTLTPSLALRGGVPTLAFGTPGGDQQEQWQLCFWLAHVLGGLDLQAAIDAPAWHTTSFPSSFYPRETNPGEVVVESRLGEQAITELRRRGHTVTVADAWSLGRLSAVSIDPETGVLRAAANPRGMQGYAVGR
>NC_017955.1|WP_166503347.1|90634_93244_+|SpoIIE-family-protein-phosphatase
MIGAARRRGADPSRRIQGRGAMSSLDPDRFAAARRVAATGVGQPGLQRLTDLAATLLGAPSAQVAVVGEVHTIAGVAGTSVWEIGTEYQREQTLGGVTIRCRGPLVVTDARTDPRVRDLPPVRSGEIVSYLGVPLVDPAQDLVVGVLAVFGPEPRHWSEGDVVLLSRLSAPVVSELELAAVTAELEASRVRGELALDAASLGTFDLDLLTDRLVWDDRMLEVFGYQRAEFPGTRRAFFDRVHVDDAGRVADVFQTSLDTRGDFVVEYRVQHPDGEVRWVESRGRTLADESGTPVRMIGAAHDTTERRHADARVARVLESMPTAFFSLDRDWTFTQANAEAERLLGRGRDELVGGDIWALFPAAVGSDFEVHYRAAMESGQQAAFEAYYPPPLDSWYEVRAWPSPEGLSVYFLDVTQRRRIEEVARRDARRLALIARVSDTLSAALIDRRGGHGALSELMSAVVPELADWAIASLIGDDGRLHDVASWHRDPDLRPVAAQYARVRLAALSSTAPIVDALATGEVTVVPDVAAAVGRGLPPGEARDAYWQLDPATAVAVALVARGRVLGAMSLYRGPDREPMDAADRATLREVADRAALALDSAALHEQQRRMAEELQRSLLTAPPEPDHSQIVVRYVPAVQAAQVGGDWYDAFLQPGGATVVAIGDVVGHDTVAAAAMGQLRSLLRGIAYSSRGGPAAVLTDLDRAIEGLQVHTLATAAVARFEQEPVDRDRGETRLRWSSAGHPPLLVLLPDGRVEVLATGRADLMLGVDARAVRREQVAVLPTGSTVLLYTDGLVEGPDLPLDDGVAQLAALLAELGGLGLDELCDQVLARMRPHGSEDDVALVAVRLHREDRPRPAEAGPEVTPDTP
>NC_017955.1|WP_014738172.1|93250_93691_-|ATP-binding-protein
MTGESAGPAWPSSPPPPAVDGWAWQLGHVSELPRVRAQLRRGLAAESDGTDAAADLDEAVVLAFDEMASNALRHGGGGVSARVQRTSRAWLVEVCDSAAERPPQPAVGRDPSQGGLGLYLIAEMADDHGWHLAGSQKSVWALLPRR
>NC_017955.1|WP_014738173.1|93852_94539_+|ABC-transporter-ATP-binding-protein
MAETGLLSATDVAVGYGGEPVCAPVTLSVEAGTAVALVGPNGAGKSTVLQTMVGLLPPLAGSVTFAGRPVDERAADFRRAVAGVLDDDAFFPSLTGEEHLLLTARGHGVVDAEQVVADQLAAFGLTERAGALPTQLSSGQRRRLALAGVLVRPARLLVLDEPERRLDTAMRRSLADRLAALVGTGVAVLFASHDPAFIGTLADRVLVVGDDACPVVAPADAVAALQEG
>NC_017955.1|WP_014738174.1|94542_96102_+|hypothetical-protein
MPAAVPLVARPEDEWSGTAVRRYTRRATAARADTSWLTRAGDLLSGLTSAGVAVALCGGTVARLREQIAARPAAGSAVLPGWLTAAAVALALAAALVALLARLGPVSATPAAAAWWLSLPAGRRGLLRGELRRVALLAGAAAAAVGVPVALTLARTPTGVLLGTGAAALLAVAAVGALVLRQAVDRTRWVPALAGAVTVAALAGPAAVGCLLAVAGGRLPSGGRGTLPEPLGAALVGLLAVVAAASMGAADRRLDRLPAGSLRASGETVQYATASVLSLDTRELGRALRTTVRRPRRRRSWRQVRHPWQAVVAGDLAVLGRSPVRWGQLLAGGALPVLAARTQGLAELPALVAVAVVLGWGSAAVAVGEPSRRATAAPAADRSLPMAAEEVVRARVLLPVVVLAVVCGLSALLVGQGTGAPLGWLALGVAAAPAWAGAAVRAGYRPDLDWSGPVLSSPMGAVPVGVSTTLVRGPDVGVLGTAPVALALLLGTVPPALVAVQLGWSVALAAFAVLTAQRD
>NC_017955.1|WP_014738175.1|96105_96873_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MSAPLSLGPARPVPLSAVNPVAQLTAVVVVTVVLLICGDLVTPLVVLAAELALLPAAGLTRPADIARRTWPLLLSAAGITWVNVAFGSLDGAAAWQSGATWGVRVIALALPGVLLVASTDPVRLADALTLHWRVSTRFGYGALAALRLVPLLATEWESIRLARRARGVDAGRNPVAGARLLAGTAFTLLVGALRRATRLATAMDARGFDSGVARSNARGSVLRPLDGWFVAGAVLLCAAAVTASVLTGAWHPVFS

Crispr_ID: NC_017955_3

• CRISPR_ID: NC_017955_3
• CRISPR_location: 2275729-2276041
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 5 spacers

Consensus repeat of NC_017955_3

Consensus_repeat	Method
GGCGGCGTCCCTGACCCCGACGCCGTCC	CRISPRCasFinder

spacers of NC_017955_3

>3.1|2275757|38|NC_017955|CRISPRCasFinder
CCGCTGACACCGAGGCGGCGGACGTCCACCGTGACCAC
>3.2|2275823|20|NC_017955|CRISPRCasFinder
CTGATGTCGTCCTCGACCCT
>3.3|2275871|35|NC_017955|CRISPRCasFinder
GCGACTTCGTCCCCGATGGCGACCACGACGACCTC
>3.4|2275934|26|NC_017955|CRISPRCasFinder
CTGACCCCGACGCCGTCCCCGTTCCT
>3.5|2275988|26|NC_017955|CRISPRCasFinder
CTGACCCTGACGTCACCTCTGGCCTC

CRISPR arrays and Neighbor proteins around NC_017955_3

CRISPR arrays

The CRISPR arrays of NC_017955_3

>merge|NC_017955|3|2275729-2276041|CRISPRCasFinder
GCCGGCACCCCGACCGCCGACCCGGTCCCCGCTGACACCGAGGCGGCGGACGTCCACCGTGACCACGGCGGCGCTCCTGAGCCCGTCCCTGACCCTGATGTCGTCCTCGACCCTGGCGGCGTCCCTGACCCCGACGCCGTCCGCGACTTCGTCCCCGATGGCGACCACGACGACCTCGGCTGCATCTCTCACTACGGCGGCGTCCCTGACCCCGACGCCGTCCCCGTTCCTGACGGCACCCCTGACGCCGGCGGCACCCCTGACCCTGACGTCACCTCTGGCCTCGACGGCGTCCCTGACCCCGACGCCGTCC

>NC_017955|3|3|2275729-2276041|CRISPRCasFinder
GCCGGCACCCCGACCGCCGACCCGGTCC	CCGCTGACACCGAGGCGGCGGACGTCCACCGTGACCAC
GGCGGCGCTCCTGAGCCCGTCCCTGACC	CTGATGTCGTCCTCGACCCT
GGCGGCGTCCCTGACCCCGACGCCGTCC	GCGACTTCGTCCCCGATGGCGACCACGACGACCTC
GGCTGCATCTCTCACTACGGCGGCGTCC	CTGACCCCGACGCCGTCCCCGTTCCT
GACGGCACCCCTGACGCCGGCGGCACCC	CTGACCCTGACGTCACCTCTGGCCTC
GACGGCGTCCCTGACCCCGACGCCGTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017955.1|WP_014740343.1|2278692_2279667_-|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl|CDD|376566
NC_017955.1|WP_014740330.1|2266119_2267817_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NC_017955.1|WP_014740332.1|2268412_2269510_+|UPF0104-family-protein	unknown	unknown	gnl|CDD|223469
NC_017955.1|WP_014740334.1|2270132_2270831_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NC_017955.1|WP_014740336.1|2271398_2271836_-|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014740331.1|2267813_2268416_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014740349.1|2285117_2285459_-|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014740337.1|2271896_2272493_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|226607
NC_017955.1|WP_014740342.1|2277486_2278665_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223489
NC_017955.1|WP_014740341.1|2277082_2277484_-|VOC-family-protein	unknown	unknown	gnl|CDD|226134
NC_017955.1|WP_014740333.1|2269506_2270133_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NC_017955.1|WP_014740335.1|2270851_2271292_-|ATP-binding-protein	unknown	unknown	gnl|CDD|340413
NC_017955.1|WP_166503457.1|2283870_2285154_+|MFS-transporter	unknown	unknown	gnl|CDD|341026
NC_017955.1|WP_014740350.1|2285497_2287678_-|MMPL-family-transporter	unknown	unknown	gnl|CDD|225272
NC_017955.1|WP_014740347.1|2282865_2283828_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176109
NC_017955.1|WP_014740338.1|2272619_2274371_+|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl|CDD|238832
NC_017955.1|WP_014740339.1|2274432_2274690_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014740345.1|2280624_2281755_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|235874
NC_017955.1|WP_014740344.1|2279666_2280608_-|VOC-family-protein	unknown	unknown	gnl|CDD|319904
NC_017955.1|WP_014740346.1|2281763_2282759_-|cyclase-family-protein	unknown	unknown	gnl|CDD|377240

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017955.1|WP_014740330.1|2266119_2267817_+|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.59486e-15
NC_017955.1|WP_014740332.1|2268412_2269510_+|UPF0104-family-protein	gnl|CDD|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.61711e-14
NC_017955.1|WP_014740334.1|2270132_2270831_+|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.72663e-25
NC_017955.1|WP_014740350.1|2285497_2287678_-|MMPL-family-transporter	gnl|CDD|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.25105e-98
NC_017955.1|WP_014740337.1|2271896_2272493_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.38354e-27
NC_017955.1|WP_014740342.1|2277486_2278665_-|alpha/beta-hydrolase	gnl|CDD|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	4.57597e-09
NC_017955.1|WP_014740341.1|2277082_2277484_-|VOC-family-protein	gnl|CDD|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.18265e-47
NC_017955.1|WP_014740333.1|2269506_2270133_+|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.55586e-10
NC_017955.1|WP_014740335.1|2270851_2271292_-|ATP-binding-protein	gnl|CDD|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	1.82729e-11
NC_017955.1|WP_166503457.1|2283870_2285154_+|MFS-transporter	gnl|CDD|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.8372e-93
NC_017955.1|WP_014740347.1|2282865_2283828_+|LysR-family-transcriptional-regulator	gnl|CDD|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.27413e-40
NC_017955.1|WP_014740338.1|2272619_2274371_+|cytochrome-c-oxidase-subunit-I	gnl|CDD|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NC_017955.1|WP_014740343.1|2278692_2279667_-|fumarylacetoacetate-hydrolase-family-protein	gnl|CDD|376566	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family. This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyzes fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase encoded by mhpD in E. coli is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase.	7.63306e-72
NC_017955.1|WP_014740345.1|2280624_2281755_-|FAD-dependent-oxidoreductase	gnl|CDD|235874	PRK06847, PRK06847, hypothetical protein; Provisional.	7.5507e-166
NC_017955.1|WP_014740344.1|2279666_2280608_-|VOC-family-protein	gnl|CDD|319904	cd07239, BphC5-RK37_C_like, C-terminal, catalytic domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase). 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxygenases are activated by Fe(II).	2.53994e-72
NC_017955.1|WP_014740346.1|2281763_2282759_-|cyclase-family-protein	gnl|CDD|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	5.27327e-17

Protein sequences

>NC_017955.1|WP_014740339.1|2274432_2274690_+|hypothetical-protein
MRLRRRHRDDWSLPSGLAEVELFRFWEEDLVGDLPPEVVAVGPPPAVRAGAPGPAAAEEPSESSTDPLWWAVGLVFVAVLLAVVV
>NC_017955.1|WP_014740338.1|2272619_2274371_+|cytochrome-c-oxidase-subunit-I
MTIAPAPIISRPGSVPPPARGSRFLALLRTTDHKTIGLMYTAVAFAWFFIGGLMALLMRAELARPELQFLSPEQYNQLVTMHGTIMLLFFATPMFFAFGNLVMPLQLGAPDVAFPRLNAFSFWLFFFGSSLALSGFATPAGAADFGWYAYVPLSTGAHSPGTGGDLWIAGLAVSGLGTILGAVNFITTIVCLRAPGMTMFRMSLFTWGCLTTSILVLLAFPILTAALMALLSERHLGAQVYTAANGGPMLWQHLFWFFGHPEVYIIALPFFGIISEVIPVFSRKPLFGYKGMVFAMIAIAALSAAVWAHHMFATGAVLLPFFSFMTYLIAVPTGIKFFNWIGTMWRGRITFETPMLFSMGFLITFLLGGLTGVLLASPPLDWHLNDSYFVVAHFHYVVFGTVTFSVFAGFYFWFPKLCGRMMDERLGKLHFWLTFIGFHLTFLVQHWLGNDGMPRRYADYLATDGFTTMHTVSTIGSFVLGASVIPFTYNAVTSWRHGAPALRDDPWGHGNSLEWATSSPPPRHNFLEIPRIRSERPAFELHYPHLKDRLQVEAHAGKRHEPYAQEAGLTGGARAGANDPDPT
>NC_017955.1|WP_014740337.1|2271896_2272493_-|class-I-SAM-dependent-methyltransferase
MPENFDEVARALHDDGVRHDADQPDRRLRRRNLGPDAAALLSVVCRAMGARWVVEVGTSNGCSTLWLARAVHDQGGTVLSVDVDGEAQGAAAATLDRVGLRDRVQFRCADGGAVLRGLPDASQDVVLLDAERSLYPRWWPDPVRVLRVGGLLAVDNVLSHPDEVADVRDRIEADPQLESTVARTGAGLLLAVRRGPAG
>NC_017955.1|WP_014740336.1|2271398_2271836_-|hypothetical-protein
MRPARLIGVPLLVCCGLLAACSDDDGSSAGAPSSSTAAPAVCGSVEDLQASLAAFPEVPVTVEGLGTLREALGQVASEVTQVVDDARSQFETQADALTASLSAVQTSVESAVSAPSAASLDAVGTSVRALADTTAGLASDVSSSC
>NC_017955.1|WP_014740335.1|2270851_2271292_-|ATP-binding-protein
MSTDSWAQDPLPEIRGPVRTTWQWEISRPAELTAARVRLRADLAGGALPEGADQDDVDRLLLAFEELASNGVRHSGAPVRVTVTGTATGWLIDVSDARPDQPPVPAVDRDPSLGGLGLHLIARLSARHGWAVVGRRKHVWACLTLA
>NC_017955.1|WP_014740334.1|2270132_2270831_+|phosphatase-PAP2-family-protein
MLVDTRRALVVSGALLAGAVLVTVLVVWPVTSPVVQAVDDAVWRGAVAVENRPTTVVAVGMSWLGSVWVNWPVRIAVLVLLAWRRHWLRLTAFALAVVSSEALIGPVKAWVDRPRPPDGLIATSGAAFPSGHAIAGAVTAVGVVLVVAAPGPMRWRWEVRAVLFAVVMALSRVYLRAHWLTDTLAGGLLGAGLALGWPALLIPFRHGTEGGPPVARGSARRTRRPRARGRPG
>NC_017955.1|WP_014740333.1|2269506_2270133_+|phosphatase-PAP2-family-protein
MTTTARTGRVAAVVRRPRDVLLLVGGSALLVLASLPVLPGTVSAAETAVFRALNATTVLPFVLVWPVMQLGNVLVVPCAAAVAAAFRRWRLAAGLLLAGAGVYLLAKVVKGEVPRGRPDGLLTDVVIRGTAALGRGYVSGHAAVVTSLLVVAWPWLGRPARIGCTVLVVAVCLARVHVGAHLPLDVVGGAALGVAVAGAVRLLLGHPR
>NC_017955.1|WP_014740332.1|2268412_2269510_+|UPF0104-family-protein
MTTLEQASPPARPRRPAWRRWLAPAFSLVLVAAMVFWFLPQFTSLSDVWASVQDMTALQIGLLLLATVWNLATYQFVMVITTPGMTLRQATVSTETTTAVANTLVGGAAVAMGLTYAMNTSWGFSRSRTSVSLLTSGLWNNFAKLGLPVVALALVAFTTPPTPGRVLAGLLGVTGLVAAVVGLWLVLRSRASAARVGVALARWVSALLRLVHRPPVHGWDLALTKFRDRTVLLLHARWHWLTLATVVSHLSLFLVLLLALRFCGVGADQVAWTEALAVFAFARLLTAVPFTPGGLGVIEVAMIGGLAAAGGDRPAVAAGVLVFRVLTYVLPIPFGVLTYVFWQRNKSWRRAPGTAPRTDLVPEQA
>NC_017955.1|WP_014740331.1|2267813_2268416_+|hypothetical-protein
MKRPGTAAALALLAAGCLTGCGSDSADPAAAITSPPACPVGDGGAGNGVILMAQSVPTAAWAPCLSPLPSGWEFRHLEVRNGISRFWLDSDRDGTRAIEVRLEESCDTAGATEIASDREYMHRLERVRQVSPTYSGERHYVFRGGCLSIVFRLDGDSPGEALALASQAVGVVSREDLQTQVHADSGGRIDLDPSRGDGQP
>NC_017955.1|WP_014740330.1|2266119_2267817_+|phosphatase-PAP2-family-protein
MTSLPQAVPTAVSPTGQAPPAIHRVRRRRRPSGEPPPLPRHLNASGKWWLAMSGLVVVAWVVVWATDSVGRFDVADTRVLQAFERIRSPALTRVAEVAGVLASATAIYVLWLGNLAVLIAVRRWRHLFVVIAVGIIVVQVGAEMAGTLQRPRPFEVEIIGPWTGFSMPSLPVTVLATLLLNAVYSLVPAGRYRTIGKWVVCVVLAVTALSRLYLAQDHPTDIAAGVILGVAVPLAAFRLLTPNDVYPVRYRRGRPAHLDVTGPRGEAIVRALEDQLGLLATAVEPFNLSGSGGSTPLRITVKAAGEGESCVFGKLYAATHVHSDRWYKLGRTLLYGRLEDEQPFHSVRRLVQYEDYVMHLFTDAGLPTPRPLGIVEITPEREYLLVAEFMAGAQEVGDADVDDAIIDQGLALVRRMWEIGVAHRDIKPANLLVRDGRLVVIDTAFAEVRPSPWRQAVDLANMMLVLGLRTDAERVYRRARLQFTDEELAEAFAATRGLTMPSQLRRMLRQQGRDLHTAFLALLPYQLPSVRIQRWSWRRVVLTLATLLAALVCAGVTSDLLRSPL
>NC_017955.1|WP_014740341.1|2277082_2277484_-|VOC-family-protein
MRMLFVNLPVRDVAAARSFYEALGFTFHRLDSDEGSASMVVDESIVVRLLARDRFAELVTGEVGDPASGPTVLLSLTADTREDVDDLVARALGSGGGPWLPPRDTASDHTGSFTDPDGHVWEIRWIDQLHVVN
>NC_017955.1|WP_014740342.1|2277486_2278665_-|alpha/beta-hydrolase
MFEYFPTGPYTWNLSVVATLNSGGLIDEVDRACRPIKEAANAGEDAGTPDFLRAWTALTDQLVGQAEEAEKAGHVRTAGQLYFRASNYLAQAERMLAHSDPNRVPTYRRLLELAQKAFDLHSPRVSRVAVPYEGTTLPAYFSQAPATDEGPAPVVVLVNGLDSTKEHMYASNHWEELAARGISCLMLDQPGTGEALRLQGLTARIDTEAWAGACVDWLETREDVDASRIGIVGWSLGGYYAPRAAAFEKRFALVVAWGANHNWGAVQRRRKEREGERPVPHYWSHVLWVWGHEGDENDLDGFLDFADGVHLDGVVEQITVPFLIAHGANDRQIPLEYAHRSYDQAVNSPKRQLRVFTPEEGATEHIGLDHLPHVSTFIADWVADTFTELARG
>NC_017955.1|WP_014740343.1|2278692_2279667_-|fumarylacetoacetate-hydrolase-family-protein
MRFATYRHDGSTRAGVVDGDVVHALPAGTTVLDLVRAGLPAAVEAGTAALAEPEVPLADVTLLPPLQAPTVRDFVAFEEHVEGVRKAIDGVAGVPPEWYQAPTFYFTNPYALVGAHDDVAVPPNSQRFDFELEVAVVVGRDGASLSPEQAREHVFGYTVLNDWSARDLQAREMRVSLGPAKGKDSATTLGPWLVTADELEPYRDDEGFLALDMRVSVNGTEVGQDLLSNMGWPFEELISYASRGTEVRAGDVLGSGTSGNGGCLAELWGTRGEAAPPPLQPGDVVEMTVEGIGTIRNRVVAGVDLPPVAPARARPRTRKRPAAS
>NC_017955.1|WP_014740344.1|2279666_2280608_-|VOC-family-protein
MTQQRLITHLRHVDLAVPDFAKQLDFYSGTWGLKAEHSDSGLAFLAAEGSPEQYVVRLREATDKRIDLISFGAANAADVDTLAGQLAADGVQLVGEPDTLQTPGGGYGFRFFDNEGRTVEISSDVAVREHRAIEEGESIPVRLSHVVINSADPEGTRAFYEKHLAFALSDTLMHPRMGDMMWFMRINAWHHSMAIARGPHPSLHHASFELRGIDEYMRGTGRLLRAGVEKIWGPGRHMAGNNTFSYFLDPHGNTVEYTTELDVLDEDTWHPHVYDFSNPEVSDQWGTANAMNEFVAQRSFNDPDKGLFVAPPV
>NC_017955.1|WP_014740345.1|2280624_2281755_-|FAD-dependent-oxidoreductase
MPAASSVLVVGGGLAGAATAIHLAAGGVAVDLIEIKPDAAALGSGITLQGNALRELRSLGVWEQAQAAGYPFDVTGIRAPDPNGTVVAEVPDAKTGGPDLPAAMGMPRPELARILLDRATEVGVKVRFGTTFTELTQDDDGVDVTFSDGSTGRYDVVVGADGIRSWTRRALGINLETRSVGMGIWRAFGPRPASVTRTDLYYGGPSFIAGYCPTSEDSLYAYIVEPAQDRSGLGPDEQLATMKQLSQAYHGPWDEIRETLTDPSRVNYTWFETHVLEEPWNRGRVVLIGDAAHTCPPTIAQGGAMALEDAVVLAELLTERQTLDQELWNDFTARRYQRAKTVVDASNQLAQWQIDHVQGDIPGLMRSIAMLTSQPA
>NC_017955.1|WP_014740346.1|2281763_2282759_-|cyclase-family-protein
MPLQDELDRTDPEGAIAAAAKRCSNWGRWGADDVLGTLNFLTEDKRVEGARLVRRGVSFSLSQAFDTDGPQKGWRRRTNPVHTMTDTGTDAERGNQGFPHGIGGADDVIAMPLQCSTQWDGLGHIFDHGNAWNGRRAGDVVTSEGDLVTGIQTAAAHITGRGVLLDVGRAIGTDGELPDGFAITAEHLEATIAAQGGSARVGRGDLLCVRTGRLTRARRDIAEGRGWGDYAGGASPGLSFTTADWLHGSEIAGIATDTWGFEVRPNEFDVAFQPLHQVAIPNIGLFLGEMWDLDALAADCAADGVWDFFLTAAPLPVTGAVGSPVNPIAVK
>NC_017955.1|WP_014740347.1|2282865_2283828_+|LysR-family-transcriptional-regulator
MNLASLDLNLLVSLDALLQQRSVTRAAAQMGLSQPALSASLARLRRHFGDELLTRVGNEYRLTPLAVQLKELARIAVAGVERVFTAQPEFDPGSSTREFTLLVSDYVVAILGDTIAELVAEEAPHTRLRFTPHSPAMVERADQVLLTADVMLLPRGFITDLSHRDLYRDEWVCVLSADNPLVDEGLTIEHLETLPWVATYHGQTASTAAARQMRMLGIEPHVQVVNEHFLTVPALIAGSDRVALLQRRLIDLLPLNSGVRALPCPFEVGPLIEAMWWHPVFDDDPEHGWLRDLVVRAAELAVGTSAVAGIDLGDDPPQEK
>NC_017955.1|WP_166503457.1|2283870_2285154_+|MFS-transporter
MPVTGPAPSSTETPVSEVVSPQPLAEEPLAGEVAVDPATGRPAGRAQAAVLLLASCLAVLGAVLLAPVLPAIEDAFAGTAGVEALTPVVLTAPALVIGLTAPFAGRVLDRVGRTRLLVAALVVYAVVGTAPVWLPSLQLIVASRVLVGLTEAVIMTCCTTLLADYFHGSQRERYFGLQVVFTTVAATLFFGLGGALGSHSWRTPFWLYLVSLPLAVAAARLIWQPVVQRPSGVLPALPWHRLAAPVAVSLVGGLVFYVLIVELSFKLDDVGVESTGAIGAVSAIASLGTAVGGASFSRLAARGPAVTVPLAFAVSGIGLVGLGLAPSVPVIVLFAVVTGLGNGLLLPSLLTWALGSLTFEQRGRGTGWWTAAVFLGQFVCPLVVLGLSAAIGGLGSAIVVLGVVALVAAGVVRASRQARAVAPAHGA
>NC_017955.1|WP_014740349.1|2285117_2285459_-|hypothetical-protein
MTSPLSAGSAARGVVRLLNTSNGRALCLAGQVDEAVVAAFVQRYGREPARVDRIEAGSVTSLSEPALDLVLEHLAAAELAGRPVMVLRTPLVERLLATARAAQAPWAGATARA
>NC_017955.1|WP_014740350.1|2285497_2287678_-|MMPL-family-transporter
MALLLSRLGAFSARHRWAVVLVWLAVLVGGGVGAATLAGTTSSTFSIPGQESTTALRLIEQDFGAGGDGATARVVVQSPDGTPLTGGENAAAVQGLVTELGGLPGVVSASDPLDPAAPAVNADQTTAYSTVTYDAPVGGVTVAEQDALVAAVDDVRGSSGLTVEIGGDALNETPSVAGVGELAGVVVALLVLALTYGTLVTAGMNLLTAVVGVGIGVLGITIATGFLDLSSTTSALAGMLGLAVGIDYGLFIVSRFRQELRRGSDVGTAVSTAVGTAGSAVVTAGLTVVIALVGLAVVGIPFLTQMGIAAAATIVVAVLVALTLVPAVLGLLGRRTLPRKERAVRGVTHHAAARRGFLAGWVTTVTRHRVLSLLLAVVALGAVAVPFFSMRTTLVQTQPEDSTQARAEQLLADGFGEGFNGPLTVLFQGDGAAEAATAASGPIADLADVTAVAPAIPNADDSAALLTVIPASGPTSQATEQLVADLRGQLADLDGVDAYVTGSTAVSVDVSESLDAALPVYLVLVVGLALVLLVLVFRSLLVPLVGVLGFLLTIGASLGATVAVFQWGWLSDLLGIPSTGPLISLTPILVIGILFGLAMDYQIFLVSRMHEAHSHGASAMEAIRTGFRQAAPVVVAAALIMFAVFAGFFTGDEATIKSIAFALASGILFDAFVVRMVLVPAALALLGERAWWLPRWLRWLPRLDVEGAALEHGTPARTTEDPVPVG

Crispr_ID: NC_017955_4

• CRISPR_ID: NC_017955_4
• CRISPR_location: 2580352-2580499
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: WYL

Consensus repeat of NC_017955_4

Consensus_repeat	Method
CAGGGCGGCTGGGGGCCGCCGAGCCAGTACGGC	PILER-CR

spacers of NC_017955_4

>4.1|2580385|30|NC_017955|PILER-CR
TCCGGGCAGCAGGGCGGCGGGTACGGCCAG
>4.2|2580448|36|NC_017955|PILER-CR
CAGCCAGGACAGGGCGGCCAGGGCGGCCAGCCCGGT

CRISPR arrays and Neighbor proteins around NC_017955_4

CRISPR arrays

The CRISPR arrays of NC_017955_4

>merge|NC_017955|4|2580352-2580499|PILER-CR
CGGCTGGGGGCCGCCGTCCGGGCAGCAGGGCGGCGGGTACGGCCAGCAGGGCGGCTGGGGGCCGCCGAGCCAGTACGGCCAGCCAGGACAGGGCGGCCAGGGCGGCCAGCCCGGTCAGGGCGGCTGGGGGCCGCCGAGCCAGTACGGC

>NC_017955|4|1|2580352-2580499|PILER-CR
CGGCTGGGGGCCGCCGTCCGGGCAGCAGGGCGG	CGGGTACGGCCAGCAGGGCGGCTGGGGGCC
GCCGAGCCAGTACGGCCAGCCAGGACAGGGCGG	CCAGGGCGGCCAGCCCGGTCAGGGCGGCTGGGGGCC
GCCGAGCCAGTACGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017955.1|WP_014740645.1|2588013_2588877_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251
NC_017955.1|WP_041796596.1|2572773_2573751_+|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|225253
NC_017955.1|WP_051144174.1|2573774_2574713_+|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|225253
NC_017955.1|WP_014740634.1|2575500_2576358_+|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl|CDD|376413
NC_017955.1|WP_014740639.1|2581974_2583117_+|aminopeptidase-P-family-protein	unknown	unknown	gnl|CDD|223085
NC_017955.1|WP_014740643.1|2586327_2587083_-|N-acyl-homoserine-lactonase-family-protein	unknown	unknown	gnl|CDD|293815
NC_017955.1|WP_014740635.1|2576368_2577265_+|diacylglycerol-kinase	unknown	unknown	gnl|CDD|237021
NC_017955.1|WP_014740644.1|2587287_2587959_+|2-keto-3-deoxy-L-rhamnonate-aldolase	unknown	unknown	gnl|CDD|226356
NC_017955.1|WP_014740647.1|2590327_2590840_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NC_017955.1|WP_014740642.1|2585314_2586163_-|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014740633.1|2575070_2575412_+|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl|CDD|234683
NC_017955.1|WP_014740636.1|2577344_2580197_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|226947
NC_017955.1|WP_041795236.1|2580991_2581900_-|5'-3'-exonuclease	unknown	unknown	gnl|CDD|214682
NC_017955.1|WP_014740646.1|2588860_2590309_-|lipase-maturation-factor-family-protein	unknown	unknown	gnl|CDD|369070
NC_017955.1|WP_166503759.1|2574782_2574974_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_083870078.1|2571581_2572604_-|DUF3866-family-protein	unknown	unknown	gnl|CDD|379008
NC_017955.1|WP_014740627.1|2569732_2570803_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_014740640.1|2583091_2583583_+|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|214628
NC_017955.1|WP_014740641.1|2583681_2585304_+|Rv2578c-family-radical-SAM-protein	unknown	unknown	gnl|CDD|238035
NC_017955.1|WP_014740626.1|2568352_2569711_+|Pup--protein-ligase	unknown	unknown	gnl|CDD|274725

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017955.1|WP_041796596.1|2572773_2573751_+|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	1.7e-45	150.6	2.7
NC_017955.1|WP_051144174.1|2573774_2574713_+|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	3.1e-55	182.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017955.1|WP_014740645.1|2588013_2588877_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.14588e-49
NC_017955.1|WP_041796596.1|2572773_2573751_+|WYL-domain-containing-protein	gnl|CDD|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.66896e-35
NC_017955.1|WP_051144174.1|2573774_2574713_+|YafY-family-transcriptional-regulator	gnl|CDD|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	4.80368e-42
NC_017955.1|WP_014740634.1|2575500_2576358_+|twin-arginine-translocase-subunit-TatC	gnl|CDD|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	3.9496e-67
NC_017955.1|WP_014740647.1|2590327_2590840_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.15289e-29
NC_017955.1|WP_014740643.1|2586327_2587083_-|N-acyl-homoserine-lactonase-family-protein	gnl|CDD|293815	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain. Acyl Homoserine Lactones (also known as AHLs) are signal molecules which coordinate gene expression in quorum sensing, in many Gram-negative bacteria. Quorum-quenching N-acyl-homoserine lactonase (also known as AHL lactonase, N-acyl-L-homoserine lactone hydrolase, EC 3.1.1.81) catalyzes the hydrolysis and opening of the homoserine lactone rings of AHLs, a reaction that can block quorum sensing. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	4.45029e-70
NC_017955.1|WP_014740635.1|2576368_2577265_+|diacylglycerol-kinase	gnl|CDD|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	4.24407e-71
NC_017955.1|WP_014740644.1|2587287_2587959_+|2-keto-3-deoxy-L-rhamnonate-aldolase	gnl|CDD|226356	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism].	3.16844e-49
NC_017955.1|WP_014740633.1|2575070_2575412_+|Sec-independent-protein-translocase-subunit-TatA	gnl|CDD|234683	PRK00191, tatA, twin arginine translocase protein A; Provisional.	5.66454e-24
NC_017955.1|WP_014740636.1|2577344_2580197_+|DEAD/DEAH-box-helicase	gnl|CDD|226947	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair].	0
NC_017955.1|WP_014740639.1|2581974_2583117_+|aminopeptidase-P-family-protein	gnl|CDD|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	5.58442e-95
NC_017955.1|WP_014740626.1|2568352_2569711_+|Pup--protein-ligase	gnl|CDD|274725	TIGR03686, pupylate_PafA, Pup--protein ligase. Members of this family are the Pup--protein ligase PafA (proteasome accessory factor A), a protein shown to regulate steady-state levels of certain proteasome targets in Mycobacterium tuberculosis. Iyer, et al (2008) first suggested that PafA is the ligase for Pup, a ubiquitin analog attached to an epsilon-amino group of a Lys side-chain to direct the target to the proteasome. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_017955.1|WP_014740646.1|2588860_2590309_-|lipase-maturation-factor-family-protein	gnl|CDD|369070	pfam06762, LMF1, Lipase maturation factor. This family of transmembrane proteins includes the lipase maturation factor, LMF1. Lipoprotein lipase and hepatic lipase require LMF1 to fold into their active states. The precise role of LMF1 in lipase folding has yet to be determined.	8.83115e-135
NC_017955.1|WP_083870078.1|2571581_2572604_-|DUF3866-family-protein	gnl|CDD|379008	pfam12982, DUF3866, Protein of unknown function (DUF3866). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 352 and 374 amino acids in length.	1.27114e-164
NC_017955.1|WP_014740640.1|2583091_2583583_+|Lrp/AsnC-family-transcriptional-regulator	gnl|CDD|214628	smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli).	1.27521e-38
NC_017955.1|WP_014740641.1|2583681_2585304_+|Rv2578c-family-radical-SAM-protein	gnl|CDD|238035	cd00081, Hint, Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.	2.86896e-13
NC_017955.1|WP_041795236.1|2580991_2581900_-|5'-3'-exonuclease	gnl|CDD|214682	smart00475, 53EXOc, 5'-3' exonuclease.	6.18447e-80

Protein sequences

>NC_017955.1|WP_014740636.1|2577344_2580197_+|DEAD/DEAH-box-helicase
MSSPAERYAAARRRTAHPTLSDFTAELGFSLDPFQVEACEALEEGSGVLVCAPTGAGKTVVGEFAVHKALQEGRKAFYTTPIKALSNQKYSDLCDRYGAAKVGLLTGDNAINGDAPVVVMTTEVLRNMLYADAPALTDLGYVVMDEVHYLADRFRGAVWEEVIIHLPEHVRLVSLSATVSNAEEFADWLVTVRGDTKVVVSEVRPIPLWQHMLVGGRVFDLFALRPAAHAGEWEQTPRGLSTRERGRAVVDPELVRYVHEQERRHDSWHGGGGSGIRGGGNRPRYRPPSRPEVIERLDRAGLLPAITFVFSRNGCDAAVGQCLASGMRLTDEVERSAIAEVIDRRTGSLPEEDLHVLGFWEWREGLLAGFAAHHAGLVPAFKETVEECFVRGLVKAVFATETLALGINMPARTVVLEKLVKWNGEAHADVTPGEYTQLTGRAGRRGIDIEGHAVVVWAPGVDPAVVAGLASTRTYPLRSSFRPSYNMAVNLVGAFGRDRARELLASSFAQFQADRSVVGLARSAARHEEDAARLAKEMNDGLSAAVLDVAGYARLRMEVSEREKELSRDTQARRRADAAESLAALRAGDVIRVPSGRRQGLAVVLDPGVTEIAEPRPLVLTEDKWAGRLASVDFPSPVTALARVRVPKNFNHRSPHARRDLAATLRTARVENDLGARRTRGRSAAADDPVLADLRHALRAHPVHGLPDREERVRAADRWLREVREAERLRRQMADRTGSLTRQFDRTCDVLQELGYLLPAAVLPVEVPEDGVPPEESPVVTDAGRRLSRIWSETDLLTAECIRAGVFRGLNAAELAACVSALVFEARREGPGTPSVPAGKVSAALAEMRRVQLQLADVEREHEVPVTRELDLGFVWAAYRWADGQTLDRVLAGAEQAGTELSGGDFVRWARQLVDLLDQLAKVADEPLAGTARAAVGRVRRGVVAVAVSG
>NC_017955.1|WP_014740635.1|2576368_2577265_+|diacylglycerol-kinase
MPQPEVAVLVNAAAGRGRGARSAAAVAAALTAAGVRPRLLTATDRDDAERQCAAAVADGVAAVAALGGDGAAHAALQAVAGTGTPLGLLPAGSGNDLALALGVPREPAAAARALAEDLHAGLVRRVDAARTGDRWWATVLCCGFDSAVTDRADRLRWPRGPRRYDVAILAELARLRPREVALTVDGVGGQLDVTLVAVANTAWYGGGLGIAPGADPGDGLLEVVVVGPVSRRELVRTRPRLATGTHVDHPAVTVLRGREVALHGAGLTTWADGEPVCPLPAVSVCEPGALAVLGTGRA
>NC_017955.1|WP_014740634.1|2575500_2576358_+|twin-arginine-translocase-subunit-TatC
MTLIGHLRELRNRVGIALLFVLIGTAVAFWWYEHGLGDFIRAPYCNLPEDLRYNEADGSCGLLVTDVFGGALIRLKIAFIAGIVLSAPCWLYQIWAFITPGLKRNEKRFGVSFVAVSTLLFALGAALAYISLSAGLRLLLGLAGEGVVVALTAQDYIGFVISLLLAFGVSFELPLIAVVLNLVGVLSHAVLARSRRWIYFLTIVFAAFITPTQDPFTMLLMAGPMCVLFELAIQVARVVDKRRAKREAALGLQGLDDDEASPLDAAPSPLDPRPSALDEPAQTQR
>NC_017955.1|WP_014740633.1|2575070_2575412_+|Sec-independent-protein-translocase-subunit-TatA
MNLGPAEIGLIILAILLLFGYKKLPDASRSLGRSLRIFKGEMKGMKDDDVRAKDQARTTPVTGTVVTPSPNPTVAPSAVDYEAEARAMEARAAEARARAEQARASSAVTDTSH
>NC_017955.1|WP_166503759.1|2574782_2574974_+|hypothetical-protein
MIVWIVVAVLALGVLGVLAYGLLGAAGRLRRELSGLEQDVQPLLVEAQATAARAAAQRSTTDD
>NC_017955.1|WP_051144174.1|2573774_2574713_+|YafY-family-transcriptional-regulator
MTRLLALVPYLQARPDGVRLADAAADFGVPEAQLRRDLDLLWVCGLPGHGPGDLIDLAFEGDRVRVTFTAGMVRPLRLSTDEAVALIVALRTLLELPGLAEGEAVSRALAKVSAAAGHPAEVAAPVVVSVDAREQSLAVVRDGLERRRALHLHYYVPSRDERTERTVDPMRLLLVDGHWYLEAWCRNVEGTRLFRLDRIDDVTVLDEPAAPPPEAHERDLDGGLYQPPAEAPRVRLRLARTARWVADYYPVEDPAEVSDPPGGLAVTVRTTDLAWARRLVASLGGTATVDEPAELAAQVAGEARAALARYAD
>NC_017955.1|WP_041796596.1|2572773_2573751_+|WYL-domain-containing-protein
MAAKRAERLVNLVIALLGTRQYVSAARIRDTVPGYEPDDGTERADEAFKRMFERDKAELREIGVPLETGRTSAFDTEDGYRIARAEYELPEITLTGEEAAAVGLALRLWQSAQLAGAAQSALVKLRAAGIEVDQTRGIQIQPRLDAGEPAFEPCYAAARDRRELAFDYRRPDAEQASRRRVQPWGVVAWHGRWYLVGHDLDRQAPRVFRLSRVTGTPRASGPEGAFQPPADLDLAAVVARQEAREEHLVVVRARPGTAIGLRRHAEPLGPADDGDDRLQVRTTEPWALADELASYGPDVLVEAPRLVRDAVVARLTRLAAMAEPA
>NC_017955.1|WP_083870078.1|2571581_2572604_-|DUF3866-family-protein
MTVEVDGDGTLRALAHPSVVGSPQAGDDVLLNTTAWAQRLGTGGYALVVAVPDRLPADPTGTGHLVKGRYTPLQVTVQGVDEQDTEHHQLIAEAEDLEGMPVVVADLHSALPAVLAGVQATDPALRVAYVMTDGGALPAAFSRTLDALADSLAGVVTVGQAFGGDLEAVTVHTGLLAARHVLHADITIVTQGPGNLGTGTPWGFSGVAAGEVCNAVHVLGGQTVGALRISEADPRPRHRGVSHHSLTAFGRVALGGVYLVAPRGLGSELGSQVEEDLAGQPQRNPIEWVDSDGLETALRDVGVPLSTMGRGLDEDRAYFLAAAAAGRYAAQLTLFGPLPA
>NC_017955.1|WP_014740627.1|2569732_2570803_+|hypothetical-protein
MTSRAELLLSGPRGRRLCLELVQEAAGRLWPPLSWTDGPDGYPIGRFDPAAVRASLAADVSRIDLDAIGQPDRLLAALLASVDQARYWQPPDDADSALADPEVAALLSPVVEAVVRAPATQWWGEAVATGDQHVVGWPDEGVTVPPAVTGARSGLLQWRTDTLIDDARDDRPVDPTAPYSGHWWSTPTFAGVPVTTRARPGVAVDRAAPVGLLLVEDEMGWQSARTWPVESPPTARVHEISGPAAWTALVSRYPLDVSAARRHDWWQVTGWAGAWAIPDWAAVAEAFDAVHLTVDGYLSTAGRALPVELDGRPTRTLLGGWDPDATWWLTEILPPLGRPVDWRRRDDEPTRWELGG
>NC_017955.1|WP_014740626.1|2568352_2569711_+|Pup--protein-ligase
MERRIFGIETEYGVTCTFKGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGSRLYLDVGSHPEYATAECDDVTELVVHDKAGERILEGLMIDAEQRLNEEGVTGDIYLFKNNTDSAGNSYGCHENYLVGRHGEFSRLADVLIPFLVSRQMVVGAGKVLQTPRGAVYCVSQRAEHIWEGVSSATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSETTTLLKVTITDLVLRMIEQGVVLRDMTLENPIRAIREISHDMTGRRKVRLANGREMSALEIQQEYHDRAAEFVEREGYGPVHRQMLELWGRTLKAIDGGDLSLIDREIDWAIKYQLIERYRGKRDLPLSSPRVAQMDLAYHDIRRGRGLYYLLENAGQVDRVTHDPAIFEAKNVPPQTTRAKLRGEFIRRAQEKRRDFTVDWVHLKLNDQAQRTVLCKDPFKAVDERVEKLIASM
>NC_017955.1|WP_041795236.1|2580991_2581900_-|5'-3'-exonuclease
MLLDAASLYFRAFFGVPTSVTGPHGRPVNAVRGFLDMTARLVVAHSPDRLVACWDDDWRPAFRVAALPSYKAHRVAEAGGEEVPDELGPQVPVLVEVLAAAGLTRVGAPGYEADDVIGTLATRARGPVDVVTGDRDLFQLVDDDRGVRVLYTNRGINDLEFVDEAAVAAKYGIPGRAYADYAVLRGDPSDGLPGVVGVGEKTAATLINEFGSLAGIRAAVARAVVPKPPLTAALLKKLRAADAYLDAAPEVVAVVTTIDLPPVDGALPRRPVDPDALDALAEAHGLESSVRRLGAALGWPDR
>NC_017955.1|WP_014740639.1|2581974_2583117_+|aminopeptidase-P-family-protein
MAAPPVLPPASVDRVHAARAVAAELGIDVVVLTPGSDLRYLCGYAAHAMERLTALVVPRRGEPLLVVPRLEAPMVGASPAGALGLELLAWDETDDPFALVATAVQARLGGPPARVAVGNRTWAEHALGLQRAMPGSVLELAAPVVDRLRMVKTPHEVEELARAAAAIDRVHARMGEWLRVGRTEAEVGADIAAAILAEGHVAVDFTIVGSGPNGASPHHELSDRVVEAGDMVVVDIGGETDTGYRSDCTRTYLVGGVAARGLLEWYGVLQRAQAAATAAVRPGVTCAQVDAAARQVITDAGWGEQFLHRTGHGIGLDTHEAPYVVAGNDLPLEPGMAFSVEPGIYLAGRYGARIEDIVVCTDDGVRILNRGTRELVELPG
>NC_017955.1|WP_014740640.1|2583091_2583583_+|Lrp/AsnC-family-transcriptional-regulator
MSSSNSPADPPAGGAPPAAPDVDRALLSALARDGRASFTDLAERVGLSVSAVHQRVRRLEQRGLITGYAAQLDAKALGLPLTAFVSITPIDVAQPDDAPARLARLPAIEACHSVAGMESYILKVRVASPDALEALLQEIRAVANVTTRTTVVLSTFYEDRPPV
>NC_017955.1|WP_014740641.1|2583681_2585304_+|Rv2578c-family-radical-SAM-protein
MRWDAQRLDFAEPDALPGLPTVRGLLRSVEVPEFPGLTFHEVRAKSALNAVPKGSAMPFGHTINTFRGCSHACVYCVAGDTAVLMADGSQRAIADLRVGDRIIGTEKRGSYRFYVETEVLAHWSTVKPAYRVRLADGTALVASGDHRFLTGRGWRHVTGSVDGRPYLGVGEELSGLGASLATAPRSSRAGDRREPVAVLERRPLLVGTLVRGDPELTVTAVDDLAAEMPMFDITTSTGDFIANGVVSHNCFARGTHEWLELDTGKDFDQQIVVKTNVVEVLRRELARPSWNHEHVALGTNTDPYQRAEGRYRLMPGVIDALARSGTPFSILTKGTLARRDLPLLAAASRDVPIGMGVSMAIWDDDLHTALEPGAPTPRARLDLVRAITDAGLPCGVFLAPVLPGLTDGRAHLAAAIGAIAEAGATGVTVLPLHLRPGAREWFTSWLAREHPGLVGRYRQLYGRGAYVPAEYRRWLAGRVGPLLAEHGLDRHSGGTARGLGGSDTGLPGDESVGFPAGSLPVRLSGPSEPPPEAAEQLSLC
>NC_017955.1|WP_014740642.1|2585314_2586163_-|hypothetical-protein
MTSGWQRALPDMPAPPAARAWARISPPRRYEAQWRRLVEAALEQDLGPDALAETGLEPVAAAREWKPATVALYTKVARYGGLEIAQPRTPEPDPLTLDLKELTRIRSDGLEHLRTVAWCSLALGWPGTVGQFRGLRRDQVHATTRRLLVSTDDGEWAVPGALTAWHAWEAARDRFPSLAASPWVLPALRKGPGVNSHVGGQLSTQALQVTFAKHAVRTATAMQATAPPSRRPEVEALAAVYLTLSYDTYRRLALAAGTPPVAPRGAVRAKRSVSRAARLAGG
>NC_017955.1|WP_014740643.1|2586327_2587083_-|N-acyl-homoserine-lactonase-family-protein
MEMTILPLGDCICAGAVLTPGHDDTVMTPVPVSGYLVTLDDGRRVLVDTGMSRDHIGNPGLTFGGSPAEEIITPAMQPADDLVSRLAEAGLAPGDVDVVINTHLHFDHAGNNFLFPGATIVVQREQYEFADGHPSFPNQYWNLPELHYELVDGAAEVAPGVEVLPTPGHVPGHQSVVLTLPQTGTVILSGDAVHVAASYELDNWDGHMDPAAARESAHMLRRLAADRRAVFLLGHEPAQVAEYPRFPHVYR
>NC_017955.1|WP_014740644.1|2587287_2587959_+|2-keto-3-deoxy-L-rhamnonate-aldolase
MAAAGLDWVGIDQQHGWNAGHDCTDLVAAVRAGGAHALVRVGWNRPEEIGRVLDAGADGVIVPMVESAEEARAAVAAARYAPEGRRSWGATRSPYTSSPSDPAAANASTACLVMVESPAALDRVEEIAAVPGIDGVFLGPFDLSLALGVPLEQLLADRGEGSALRRVVAACAENGVVAAAYGGTPARAQLLGDHGFTVLAVGADDALFADASAALVAQARALG
>NC_017955.1|WP_014740645.1|2588013_2588877_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MYTARWGDVARRDLFGPHPDPRDRPYHGVIRLALIVFRLFRFRFDVRGQEHVPATGGAIICSNHVSFFDFTYLGLAALPQHRMVRFMAKASVFSNRFSGPFMRAMHHIPVDRTAGAAAFDSAVRALKDGQVVGVFPEATISTSFTVKDLKAGAARMAVQAGVPILPAAVWGGHRIATKAHDVVLRRDVAVTVLIGEPLVPEPGEKPQALLRRTRVAMEALLDEAQRSYPDQPAGDDDRWWLPAHLGGTAPTPEEAAVRDNAYAAGHKVTSTRTPPLEQVRKLLTRRR
>NC_017955.1|WP_014740646.1|2588860_2590309_-|lipase-maturation-factor-family-protein
MDWFTDPGAWLGRWLFTRGIALVYLIAFVAALRQGRALIGTTGLTPVPRFLERVPWRRAPSLFHLHWSDRFFAGCCWVGIALSAAALAGLADRLPVAGWMVLWLVLWALYLSIVNVGQIWYGFGWETLLLEAGFLTVFLGPAHVAPPTLGMWALRWLLFRLEFGAGLIKMRGDRCWRDLTCLAYHHETQPMPNPLSWWFHRLSPRLHKVETLANHLTQLVVVFGLLLPQPVAGVAAAVMVVTQGYLLVSGNFAWLNALTLVLGLSALDGRWLAAVLPLQPPDALSSPDWFLAVSVVLAVAVAGLSVGPVRNLLSPDQRMNTSFDPLRLVNSYGAFGSVTRVRRELVVEATDDPQPGPGTVWREYEFRGKPGDVRRRPPQWAPYHLRLDWLMWFVALSPAYGRAWLTTFLDRLLDADPATLRLLRSAPFGSDRPAAVRVLLYRYRFTTRAERRATGAWWHRTYERQLVGPRTAAGRGSLSGDG
>NC_017955.1|WP_014740647.1|2590327_2590840_-|GNAT-family-N-acetyltransferase
MELLCTGRLRLRAWTAADADLARLADIYGRDEVTRWLGGPPTVTPAELVERWLLVHELNAVHGCWAIDPLDGDAPAGTVLLKPLPDGVGEVEVGWHLHPDSWGRGYATEAARAVVDRAFDDGLLEVFAVVRPGNEPSLAVCRRLGMQPLGRTSRWYGRELEAFRLDAPES

Crispr_ID: NC_017955_5

• CRISPR_ID: NC_017955_5
• CRISPR_location: 4510226-4510467
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NC_017955_5

Consensus_repeat	Method
GCCCCGGCGAAGCGGACCCGCAAGGCCGC	CRT

spacers of NC_017955_5

>5.1|4510255|40|NC_017955|CRT
GAAGAAGGCCGCCCCGGCAGCCGACGGCACCGCCGCCCCG
>5.2|4510324|46|NC_017955|CRT
CGCCACCCCGGCGGCCGAGGCCGCGCCGGGCGCGACCGACGACGTC
>5.3|4510399|40|NC_017955|CRT
CGCCAAGAAGGCCGCCCCGGCCCTGGACGACGCGGCGCCC

CRISPR arrays and Neighbor proteins around NC_017955_5

CRISPR arrays

The CRISPR arrays of NC_017955_5

>merge|NC_017955|5|4510226-4510467|CRT
CCCCCGGCGAAGAGGGCCCGCAAGGCCGCGAAGAAGGCCGCCCCGGCAGCCGACGGCACCGCCGCCCCGGCGCCTGCGAAGCGGACCCGCAAGGCCGCCGCCACCCCGGCGGCCGAGGCCGCGCCGGGCGCGACCGACGACGTCGCCCCGGCCAAGCGGACCCGCAAGGCCGCCGCCAAGAAGGCCGCCCCGGCCCTGGACGACGCGGCGCCCGCCCCGGCGAAGCGGACCCGCAAGGCCGC

>NC_017955|5|1|4510226-4510467|CRT
CCCCCGGCGAAGAGGGCCCGCAAGGCCGC	GAAGAAGGCCGCCCCGGCAGCCGACGGCACCGCCGCCCCG
GCGCCTGCGAAGCGGACCCGCAAGGCCGC	CGCCACCCCGGCGGCCGAGGCCGCGCCGGGCGCGACCGACGACGTC
GCCCCGGCCAAGCGGACCCGCAAGGCCGC	CGCCAAGAAGGCCGCCCCGGCCCTGGACGACGCGGCGCCC
GCCCCGGCGAAGCGGACCCGCAAGGCCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017955.1|WP_041797396.1|4523972_4524548_+|class-F-sortase	unknown	unknown	gnl|CDD|320678
NC_017955.1|WP_014742459.1|4506771_4508637_+|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl|CDD|274140
NC_017955.1|WP_014742465.1|4517495_4518725_-|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl|CDD|180261
NC_017955.1|WP_014742453.1|4496532_4497318_-|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl|CDD|236162
NC_017955.1|WP_014742458.1|4504664_4506671_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl|CDD|200482
NC_017955.1|WP_014742451.1|4494285_4495125_-|ABC-transporter-permease-subunit	unknown	unknown	gnl|CDD|226616
NC_017955.1|WP_014742460.1|4508636_4510010_+|trehalose-biosynthesis-protein	unknown	unknown	gnl|CDD|225820
NC_017955.1|WP_014742455.1|4498259_4500404_+|glycogen-debranching-protein-GlgX	unknown	unknown	gnl|CDD|131155
NC_017955.1|WP_014742456.1|4500802_4501777_-|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|238017
NC_017955.1|WP_014742464.1|4515962_4517435_-|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224154
NC_017955.1|WP_166503573.1|4523004_4523898_+|DUF4397-domain-containing-protein	unknown	unknown	gnl|CDD|379570
NC_017955.1|WP_014742466.1|4518939_4519389_+|methylmalonyl-CoA-epimerase	unknown	unknown	gnl|CDD|213772
NC_017955.1|WP_014742457.1|4501989_4504539_-|alpha-glucan-family-phosphorylase	unknown	unknown	gnl|CDD|340852
NC_017955.1|WP_014742454.1|4497365_4498187_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224044
NC_017955.1|WP_193375797.1|4514931_4515846_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|225660
NC_017955.1|WP_014742468.1|4521083_4522958_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_166503881.1|4524557_4524767_-|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_083869900.1|4513367_4514819_+|neutral-zinc-metallopeptidase	unknown	unknown	gnl|CDD|225203
NC_017955.1|WP_051144052.1|4495220_4496369_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270267
NC_017955.1|WP_014742467.1|4519463_4520888_+|hypothetical-protein	unknown	unknown	gnl|CDD|370676

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017955.1|WP_041797396.1|4523972_4524548_+|class-F-sortase	gnl|CDD|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	1.92682e-61
NC_017955.1|WP_014742459.1|4506771_4508637_+|maltose-alpha-D-glucosyltransferase	gnl|CDD|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_017955.1|WP_014742465.1|4517495_4518725_-|acetyl-CoA-C-acetyltransferase	gnl|CDD|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NC_017955.1|WP_014742453.1|4496532_4497318_-|enoyl-CoA-hydratase/isomerase-family-protein	gnl|CDD|236162	PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.	7.94554e-77
NC_017955.1|WP_014742458.1|4504664_4506671_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl|CDD|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_017955.1|WP_014742451.1|4494285_4495125_-|ABC-transporter-permease-subunit	gnl|CDD|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	8.51478e-70
NC_017955.1|WP_014742460.1|4508636_4510010_+|trehalose-biosynthesis-protein	gnl|CDD|225820	COG3281, Ble, Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism].	1.45219e-89
NC_017955.1|WP_014742455.1|4498259_4500404_+|glycogen-debranching-protein-GlgX	gnl|CDD|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_017955.1|WP_014742456.1|4500802_4501777_-|FHA-domain-containing-protein	gnl|CDD|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	2.46936e-11
NC_017955.1|WP_014742464.1|4515962_4517435_-|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.79902e-84
NC_017955.1|WP_166503573.1|4523004_4523898_+|DUF4397-domain-containing-protein	gnl|CDD|379570	pfam14344, DUF4397, Domain of unknown function (DUF4397). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.	4.96962e-19
NC_017955.1|WP_014742466.1|4518939_4519389_+|methylmalonyl-CoA-epimerase	gnl|CDD|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	3.87887e-54
NC_017955.1|WP_014742457.1|4501989_4504539_-|alpha-glucan-family-phosphorylase	gnl|CDD|340852	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase. This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism.	0
NC_017955.1|WP_014742454.1|4497365_4498187_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	7.66843e-88
NC_017955.1|WP_193375797.1|4514931_4515846_-|tetratricopeptide-repeat-protein	gnl|CDD|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	6.11869e-53
NC_017955.1|WP_083869900.1|4513367_4514819_+|neutral-zinc-metallopeptidase	gnl|CDD|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	7.51997e-15
NC_017955.1|WP_051144052.1|4495220_4496369_-|extracellular-solute-binding-protein	gnl|CDD|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.18077e-48
NC_017955.1|WP_014742467.1|4519463_4520888_+|hypothetical-protein	gnl|CDD|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	7.0604e-09

Protein sequences

>NC_017955.1|WP_014742460.1|4508636_4510010_+|trehalose-biosynthesis-protein
MSALTDMLADWMPGQRWFGGKGREWASVSEDGFFLDQSDPALSVHRVRVSYTDGHTETYLVPLSWRSAPAEDLASAFVGAVPGSQGENYAYDAMRDRDATVPWLTHLVAASTVGPMHFHPAGVAYIPEGLPGDVISTEQSNTSLVYGETAILKLFRRLEPGLNPDVEILDALRRTENKHIAPLLGHIEIDDTDPAQPPATVAMLQAFVPNASDGWRLATSSVRDLYAEGDLHADEVGGDFAGESERLGEATASVHADLARVLPTEPADRDWYAAVAAQMTERLEAALAVVPDLAEHGDALRALYAAVAETDEPVVRQRVHGDLHLGQVLRTTSGWIVLDFEGEPARPLAARRETDTPLRDVAGMLRSFDYAARHMLVEQPDDPQRAYRAQEWAERNRTAFCAGYSAAAPDITLSSESALLRAFEADKAVYECVYEARNRPHWLMIPLSSLSRLTSGD
>NC_017955.1|WP_014742459.1|4506771_4508637_+|maltose-alpha-D-glucosyltransferase
MTLPVPAQSTPGAGEPSALSSPGSDPEWFKRAVFYEVLVRGFADSNADGIGDLRGMIGKLDYLQWLGVDCLWLPPFFASPLRDGGYDVSDYTAVLPEFGDIEDFKELIGETHSRGMRMIIDFVMNHTSDQHPWFQASRSDPEGPYGDFYVWADDDTGYPDARIIFVDTESSNWTFDPVRKQYFWHRFFSHQPDLNFENPKVQEAIIDALRFWLDLGIDGFRLDAVPYLFEEEGTNCENLPKTHEFLKKVRKVVDAEYPDRVLLCEANQWPADVVEYFGEDGDECQMAFHFPVMPRLFMAVRREQRFPISEIMAQTPDIPENCQWGVFLRNHDELTLEMVTDEERDYMWGEYAKDPRMKANIGIRRRLAPLLDNDIDTLELFNALLLSLPGSPVLYYGDEIGMGDNIWLGDRDGVRTPMQWTPDRNGGFSTADPQRMHLPLIADPVYGFQVTNVENQLRNTTSLLHWLRTMIAVRSQHPTFGVGSFAEISSRNPTVLSFVREFGDDVVLCVNNLSRFPQPVELDLRRFEGYTPIELTGRVQFPQIGVLPYMLTLAGHGFYWFELSKPAAPAAEEEESWESTASSSVAQSLLDAGVVGATEAPAGSGGLGAEAPTTTTTHGEA
>NC_017955.1|WP_014742458.1|4504664_4506671_+|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MTGRPDLRLGISDVAPVVSCGSFSTRAVVGEHLPITATVFREGHDAVAADVVLTPPGGDPAGRQVVRMVRFGPEPDRWTATVVPSSEGLWTYQVEAWDDPLGTWHHDIEVKVEAGQGPEELANDLESGARLLDEVAATAPAEHREALTAAATALRDRSLELTARIAPALSPSLQRVLHDHPVRRLVTGSQVVELWVDRPRALYGSWYEFFPRSEGPVVGGTPTHGTFAQAAERLPAIAEMAFDVVYLPPIHPIGHTNRKGKNNTLVAHADDVGSPWAIGSEEGGHDAVHPQLGTLEDFEAFVARTRELGMEVALDLALQATPDHPWVREHPEWFTTKPDGTIAYAENPPKKYQDIYPINFDNDPEGLYAEVLRVVRHWTAAGVRIFRVDNPHTKPLNFWHWLIWEVKKTDPDVLFLAEAFTRPAMMHQLARIGFTQSYTYFTWRTERWELEEYGRELAANAHYMRPNFFVNTPDILHETLQIGGPPMFKIRAVLAALMSPTWGVYSGYELFEHVGLRPGSEEYLDTEKFQLRPRDWAAAEASGRTLAPYLRRLNEIRRAHPALQQLRTLRFHPTDNENLLCFSKTDPASDDAVLVVVSLNSTYTQIGTTSLDMPALGLDWSDRFAVTDEITGAHYDWGQSNYVELDPYREPAHVFTVHRSRHSPVQPG
>NC_017955.1|WP_014742457.1|4501989_4504539_-|alpha-glucan-family-phosphorylase
MRALRRLTVRASLPEALRPLSQLVTNLRWSWHWETRDLFEALDPELWESCGGDPVKVLGEVSAERLATLAEDPEFLRRMHAVAEDLRTYLDAPHWYQSLGDGAPASIAYFSAEFGITEVLPQYSGGLGILAGDHLKAASDLGVPLIGVGLLYRSGYFSQGLSPDGWQLEHYPALDPHGLPLKLLREPDRTAVVISVPLPEGRTLHAHVYRAQVGRVSLLLLDSDIEENAPAERGVTDRLYGGGEDHRLRQEMLLGVGGVRAVRAFCSLTGTPQPEVFHANEGHAGFQGVERIRELTESHGLSFSEALQAVRGGTVFTTHTPVPAGIDRFPKALIERYFAGFGVPVEQLLPLGAEEDPSKFNMAHMGLRLGQRANGVSQLHGHVSRDMFGALWPGFDADDVPISAITNGVHAPTWTARELLELGTQSTSQGDPATVQGDVHFDGVDRIDAGVLWGTRRLLRARLVEEVRRRVRATALSRGAAEAELGWTETAFDPDVLTIGFARRVPSYKRLTLMLKDPARLKALLLDTDRPLQLVIAGKSHPADDGGKQLIQQMVKFADDPEIRHRIAFLPNYDIGMARYLYWGCDVWLNNPLRPLEACGTSGMKSALNGGLNLSIRDGWWDEWFDGQNGWAIPTAEGVSDHDRRDEVEAQAIYELLDRQVLPRFYEVDADGVPTRWVEMIRDTLRETGPKVQATRMVRDYVEQLYVPAAGAARAMADGGYEAARSEASWRSHVLENWHGVRVAHVEATGVGETPEIGGGIDLRAEVELPGLTPHDVLVEAAFGRVDDADGLHQVTTVPMAHETTEGSRHWFSATVPLTRTGAFGYTVRVLPHSEHAAVPAELGVVVNA
>NC_017955.1|WP_014742456.1|4500802_4501777_-|FHA-domain-containing-protein
MPDRCEVLPGDSVVARRGGGLLWVDAPGSPALVAALHACLGVAGPGADRVLAAVAGQVSRLADGPASFALVLADTTGGSASGVALWSGKGQPAVDGVPVSGQAADGCTLAAGFSLGQTLYVGPGQSAAAMPPGVALDLVEGTVPGSGALLQHAAAASSAAVAPPVSSLPSGESFTAGSDAGFGSSARGAAPAQAPATGGEQTAFWRPEPPAAPVLRFDDGMVVTVDEDLVLGRRPDGHDLVTSGNARPVPIADTQNVLSSAHAAIQRAGREVSLTDLGSLNGTHVAGPEATEWTQLEPGVPHPLADGDRLLLGWTVITFEQTPE
>NC_017955.1|WP_014742455.1|4498259_4500404_+|glycogen-debranching-protein-GlgX
MTASRSARTVEVWPGRAAPLGAHWDGTGTNFALWSAGASGVDLCLFDPDGTEHRHRLQETTHQVWHGRVPGVGPGQRYGYRVHGPFDPASGARYNPAKLLLDPYARAVDGDLVLDGSLYAHDPRDPFLPDTADSAPFVPRGVVVHDSFPWDGDALLRTPWSDTVVYEVHVKGATMRHPDVPPELRGTYAGLAHPAFVEHLISLGVTAVELLPVHQFVSEPHLLRRGLTNYWGYNTLGYFAPHGAYSSSGTAGGQVTEFKAMVKALHAAGIEVILDVVYNHTAEGDHTGPSLSFKGIDNAGYYRLGGPGAGDDPSRYTDYTGCGNTLDVRRPAVLALLMDSLRYWVTEMHVDGFRFDLASALARSMHDVDRLSAFFDVVHQDPVVSSVKLIAEPWDVGEGGYQVGNFPPPWTEWNGKYRDTVRDVWSGAQVGVRDLAYRLTGSSDLYRSDGRRPFASVNFVTAHDGFTMADLVAYERKRNEANGEDNRDGESHNRNWNTGVEGETSDPAVLELRGRQVRNHLATLLLSTGVPMLTAGDELGRTQGGNNNAYCQDNEVSWLDWAAIDPDLWSFVAHAVGLRRTSPALRQEAFFEGSEVPGTGGTRDLAWFAPDGEQLTNRDWFDTGLQTIGMYLDGRGLRHRDERGRPVVGDSWLVWLHAGPEPVDVVLPGAPWGDGYELVLATEYPTGVPPRPTALPPGRASMPDRSVWALRIVR
>NC_017955.1|WP_014742454.1|4497365_4498187_-|ABC-transporter-ATP-binding-protein
MSGVWTEPVVEIRGVDVVRGEAHLLRGVDWTVRPDERWVLLGPNGAGKTTLLQLASAQMHPTRGSVGILGETLGAVDVFELRPRIGLTSAALAQRIDPAERVGDVVVSAGYAVVGRWRERYDVHDLTRAAVLMQQWGVARMAHRPFGTLSEGERKRTQIARALMTDPELLLLDEPGAGLDLGGREDLVTRLSDLARDPYAPAQVLVTHHVEEIPPGYTHALLLRGGEVVAAGPVEDVLTAPLLSDAFGVPLEVQREDGRYAARRATQPVVGAS
>NC_017955.1|WP_014742453.1|4496532_4497318_-|enoyl-CoA-hydratase/isomerase-family-protein
MADPEFVTLQVEDGVGTIRLDRPKMNAIDEQLHWEVRGAAMEAAERADVRAVVVYGGERVFAAGADIKAMSQLDGSTMVAWGRELTASFTAVARIPKPVIAAVTGYALGGGYELALCADFRVLGTNAKIGQPEILLGVIPGAGGTQRLARLVGPAKAKDLVFTGRHVGAEEALAMGLADAVVPDEEVYPTAVAMARKFAAGPPLALAAAKQAIDEGLDGDLDAGLALESRLFAALFDTEDQKAGMRSFLESGPGKATFTGR
>NC_017955.1|WP_051144052.1|4495220_4496369_-|extracellular-solute-binding-protein
MSVRRTPLRVAVAVTALGLTLSACGSDDGGSDGGSGADAAGATSLADIGSLDDLVAAAQAEGTLNVIALPRDWANYGEMLDTFSQKYDIEINSASPDGSSQDELDAVTSQRGQDRGPDVLDVGTSFAQQAAAQDLVAPYKVATWDEIPDGQKDADGTWVNDYGGYISIGCNASVVQTCPTSFQDLLDPRYKGQVALNGDPTQAAAAFAAVWAASLSNGGGLDDIGPGVDFFTELKASGNFNPVQVTPATVASGETPLALDWDYLNAAGTADLADQGVDWQVNVPTDGLYGGYYSQAISAYAPHPAAARLWQEFLYSDEGQNIWLKGGARPVRLPAMQDAGTADADALSALPAVEGTADFPSAEQLAAAQQVVATRWNAEISG
>NC_017955.1|WP_014742451.1|4494285_4495125_-|ABC-transporter-permease-subunit
MLGVVPFFGYVGLFLLLPVGVLAVEAFRSTDPVTFEETWSTDSVVAVTGGAYRRAYLGSLELSLVTAVLGAVLGLALAVAVLRTRRGRLLRRLVLTASGVLANFGGIPLAFAFIATIGNAGVLTAFLQDALGLGLGGFTLYSMTGLALVYLYFLVPLMVLTIVPALEALRPQWREASDNLGASGWQYWRYVGGPVLAPPVIGATMLLFASAFAAYATARALVGSSVPLVTLQIANALSSNVVVGSENLGKALALGMIVLIGVVMAFYAWVQGRTQRWLS
>NC_017955.1|WP_083869900.1|4513367_4514819_+|neutral-zinc-metallopeptidase
MTDREPMSSSPRRVLARAVVGALLGSTVLTGCAATLIQGNATPASGVSADVDPQQFQIIGATDDEIDQIARNALLDLNTYWAEQFPGTFSQEFTPLAGGYYSVDPADVDPAQYPNGQIGCGEPPEAVEDNAFYCDASNSYPNGDAIQYDRSFLGELAFGSGGSEGYGRFIPALVMAHEFGHAVQGRVGYPFQASIAIETQADCFAGTWTKWVADGNAPHNTIRPGELDDVLRGYLLLRDPVGTGLNSGEAHGSYFDRVSAFQQGFDDGPTACRDAFGQDRPYTQGEFSDADLATGGDAPYDQTVDEFAPQGLGEFFTAALQQQGKTFAAPTLEPFDGDAPECDGEQPDTDLVYCAATDTVGYDQGDLTEPLYADEQGGDYAVLTALAIPYGLAVREQLGLSTDDQDAVRSAVCLAGAFTAGVLNGQSSVLSISPGDADESVSFLLEYSDDPDVLADSGLTGFQLVDVFRSGVFDGLSACDIGA
>NC_017955.1|WP_193375797.1|4514931_4515846_-|tetratricopeptide-repeat-protein
MAASLAGAVDLAAVKARNEAAARAQAAPPPSAAAPVGAPGSAVVDVTEATFQSEVLDRSFQVPVVLDLWAEWCGPCKQLSPVLERLATEGAGSWVLAKIDVDANPALAQGLRVQGIPAVKAVWQGQLVAEFTGAIPEEQARQFVTELVAATSGGALPGGAEGGEDELPEDPRLDEAEAALDRGDLAAAEAAYRSILDAEPDHPVAGLALRQVQLFRRAEEAGPDALAAAEAAPDDVAAQTRAADFLLGTGDVDAAFGWLLDVVRRTAGEDRDAARKHLVELFGIVGDEDPRVGPARRALMTALF
>NC_017955.1|WP_014742464.1|4515962_4517435_-|NAD(P)/FAD-dependent-oxidoreductase
MNGTPDAVVVGAGPNGLAAALRLAAAGLSVRVVERGDRPGGGMRTEEHIRPGYWHDICSTVHPMAAAAPFFREFDLASRGVRLVHPEINFAHPLDGGRAALSFSSLEHTAAGLGPDADGYRRLFGPLLRHADEITDFFLTSAFRRLPVRGAPAVTRFGLQGLPNVGYLAARYFSTDAGKALIAGAAAHGMLDLTRPLTAALGMFLGMMSHHQGWPLIEGGSQRLADAMVTALEQQGGEVVTGHEVTDLREFAGVPAVLLDTSPGAFVAMAGNQLPVGYQRWVRRYKHGPGVFKIDWVLSEPVPWANADVRRAGTIHVAGTMEETIAGEAAPAHGRLADKPYVLAVQPTVVDPTRAPEGGHIFWAYVHVPHGSTVDMTEAIEAQVERFAPGFRDTIVGRRTMHAGEMEHWNPSDVGGDISNGEASLRQMLARPVPRWNTYSTPITGTYLASAATPPGPAVHGHCGDNAARVALRQVFGIRKAPRLRPAPPA
>NC_017955.1|WP_014742465.1|4517495_4518725_-|acetyl-CoA-C-acetyltransferase
MSQPAQSRSVIVGGARTPMGRLLGSLKDFSAADLGGIAIKAALERAGITGDQVDYVIMGHVIQAGAGQNPARPAAVAGGIPMSVPSFTLNKVCLSGLDAIALADQLIRAGEFEVVVAGGMESMTQAPHLLQGSRTGTKFGDATLVDSMAHDGLTDTFDQVAMGKLTEDSNSRYGLTREEQDAFAAESHQKAARAAKDGIFDAEITPVLIPQRKGDPIEFREDEGIRPDTTVESLARLKPAFAKDGTITAASASQISDGACAVVVMSAAKAEELGLTVLAEIGAHGVVAGPDATLQTQPSRAVQKACEREGIDPAALDLVEFNEAFAAVAIVSTRELGIDPAKVNPNGGAIALGHPVGMSGARIVLDLALELGRRGGGVGAAALCGGGGQGDALILHVPGRALADQPTGA
>NC_017955.1|WP_014742466.1|4518939_4519389_+|methylmalonyl-CoA-epimerase
MPDDARTGLPPELFSTIDHVGIAVPDLDEALAFYAATFGIHSVHEETNAEQGVREAMLAVGDGTTRIQLLAPLTPDSTIAKFIGRSGPGLQQLAFRVADVEAVSATLRERGLRLLYDEPRRGTAGSRVNFVHPKDAGGVLVELVEPAAH
>NC_017955.1|WP_014742467.1|4519463_4520888_+|hypothetical-protein
MSDPHDDLLAYRDGGPTFDVVRKGYDREQVAETLAGLDADLRVALADRDAAVSRSADLARQLQALHGEVESLRRRAASASAPTFENMGERISNMLQLAEDEAAEIRRSAQEQAAAMQAQVAAEVEAIRERIAGEERALGERSAASQAEAERLVAEARQHAEQISAVAQARADDLVTKAQERVARLDADSQARRAKVEEDFEIAQRARRTEAARTEEERERASVLAAQQRVGAADEQARRTVAEAEASAAAIRAVRDDLTRRLTEVRSLLGQLPDLSDQRPRDGARQQRPDQSPAPEQAAPAEPRRTEARHADAAPAEAPPTQAAPQAEPAPAPREEAPATGSTAVDPAQVQPAAQAATADPAATQPSVTQTQAVRLPANGSAPQQNAPRPVGQAAAPTGEQGAVQPPRQVRTPTPAHPTTAQQPAVQAGQAQQRPQPGPRQTPPLPTRAPVTRTQEPTPPVPAGQGGQVPPGQS
>NC_017955.1|WP_014742468.1|4521083_4522958_+|hypothetical-protein
MSEPPTPRTPGGTHGAHAAAADDRAPAPVPGPATVPGRHRAAAAGTAPSRGRSGVLWPLLALVVVALVAARSLRGTALPDDGALAGPAAALLRGDSGPELASPAGLGALHTAVYATVTRAFQRHATLVGAERELLLVVLLASAVLLWRTARRFDVPDGACAVAVLALGALPVLTSLHATATPAAFAVGWLVLAGWVASWASTSRRPPAVLSALTALAALLAVLLAPDALLLLAAGGTAAVVLTARSRRRQVGAALAGAVLLGLLRVLVQRWDPQVADPGRWGGTPTGLVVVTAVLVVVGLAAVWQLPRFRAGGVALTATALLAVAPPSGRLPALLLCLPLGALLLGALAAAGAEAVSSPVLRRRPRGLLAVGVAAGVLLVGAGTAAAADLAGTPRDDFGAAATRDLVGWTAAQLPDDAVLSTSPRLAAELVHAGADPARVRTGDVPVTASTGPEVPVLQVRSGSSAAGGPVVARFGDLAVVDPRAVPPTAAQLTARRELATALLANPTVEVPAADAERMSAGQVDPRLLTLLASIGAQYGFGLVDLPAVPGEPADADARQVVLGSVGGRPLGDDPAATARLRSWLAAQQEPFLTDRVAELDAGVLIGYARVADPDGLVTPPGGG
>NC_017955.1|WP_166503573.1|4523004_4523898_+|DUF4397-domain-containing-protein
MKQRPASSPLPRRARGPLLALLVAGLCALGLPTASAAPAPGDTGLLRMMHLSPDTPSVDAYIDSVSDPDVGVVLPAVSYGDVSPYQAVPAGTYTVSARKAGAAADSPPALATTVTVAPGQAVTIAGVGYFAQLGFAVLTDDLTLPPSGQSRARVINGAATGSPLGLALDSTSTLAQGLDFARNTDYVDVPGGAGTLTVTPSSAPATDLPVTLDAGSVYTVVVLDRSGGGLTVTAALDAASPGVVPVGGVEAGAGGTAADAGPPVGLLAVAALAGLALLLTTRVRLPRRGRPARHAAS
>NC_017955.1|WP_041797396.1|4523972_4524548_+|class-F-sortase
MRWALALVAVTAGALALFSPGSSSPTARAEAAPPAPVVVAAPAARTVAAPVRVVIPAIGVDSALTDIGVDAAGALVPPADFTQAGWFAAGPVPGEVGPAVLAGHVDDRSGPAVFFRLEDLTAGDQVLVTDGDGQVHAFTVTRVAAYPKTAFATAEVYGPTAGPELRLITCGGTFDRSRRSYTDNVVVYART
>NC_017955.1|WP_166503881.1|4524557_4524767_-|hypothetical-protein
MVRPLTGAATGKTYRCPGCDQEIRPGTPHVVTWPAYARDSDLDPWDTESATDWRRHWHTACWRARGRRR

Crispr_ID: NC_017955_6

• CRISPR_ID: NC_017955_6
• CRISPR_location: 5166512-5166589
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017955_6

Consensus_repeat	Method
CCGCCGAAGATGTCGCCCAGGCCG	CRISPRCasFinder

spacers of NC_017955_6

>6.1|5166536|30|NC_017955|CRISPRCasFinder
CCGGCCCGGCCGGCACCGGGGGCACCGCCG

CRISPR arrays and Neighbor proteins around NC_017955_6

CRISPR arrays

The CRISPR arrays of NC_017955_6

>merge|NC_017955|6|5166512-5166589|CRISPRCasFinder
CCGCCGAAGATGTCGCCCAGGCCGCCGGCCCGGCCGGCACCGGGGGCACCGCCGCCGCCGAAGATGTCGCCCAGGTCG

>NC_017955|6|4|5166512-5166589|CRISPRCasFinder
CCGCCGAAGATGTCGCCCAGGCCG	CCGGCCCGGCCGGCACCGGGGGCACCGCCG
CCGCCGAAGATGTCGCCCAGGTCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017955.1|WP_014743112.1|5167791_5169660_-|molecular-chaperone-DnaK	unknown	unknown	gnl|CDD|234715
NC_017955.1|WP_014743105.1|5160159_5161428_+|FAD-binding-oxidoreductase	unknown	unknown	gnl|CDD|223354
NC_017955.1|WP_014743107.1|5162921_5164676_+|L-lactate-permease	unknown	unknown	gnl|CDD|224535
NC_017955.1|WP_014743114.1|5172312_5172873_+|hypothetical-protein	unknown	unknown	unknown
NC_017955.1|WP_083870122.1|5164694_5165222_-|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224759
NC_017955.1|WP_014743102.1|5155882_5156689_-|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NC_017955.1|WP_014743115.1|5172935_5173901_+|DUF389-domain-containing-protein	unknown	unknown	gnl|CDD|129372
NC_017955.1|WP_014743118.1|5176087_5176696_-|dCTP-deaminase	unknown	unknown	gnl|CDD|234753
NC_017955.1|WP_041795604.1|5173944_5175243_+|MFS-transporter	unknown	unknown	gnl|CDD|340897
NC_017955.1|WP_193375808.1|5158741_5160160_+|FAD-binding-protein	unknown	unknown	gnl|CDD|183043
NC_017955.1|WP_014743120.1|5178012_5178993_+|arsenic-resistance-protein	unknown	unknown	gnl|CDD|223869
NC_017955.1|WP_014743106.1|5161427_5162828_+|glycolate-oxidase-subunit-GlcF	unknown	unknown	gnl|CDD|236890
NC_017955.1|WP_014743113.1|5169948_5172240_+|(Fe-S)-binding-protein	unknown	unknown	gnl|CDD|223325
NC_017955.1|WP_014743119.1|5177504_5177912_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133398
NC_017955.1|WP_041795601.1|5166997_5167729_-|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl|CDD|237632
NC_017955.1|WP_014743103.1|5156919_5158521_+|malate-synthase-A	unknown	unknown	gnl|CDD|236432
NC_017955.1|WP_166503930.1|5175239_5175986_-|methylase	unknown	unknown	gnl|CDD|225443
NC_017955.1|WP_014743100.1|5153890_5155135_+|CoA-transferase	unknown	unknown	gnl|CDD|367110
NC_017955.1|WP_014743101.1|5155131_5155902_+|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl|CDD|180424
NC_017955.1|WP_014743109.1|5165257_5165689_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|133394

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017955.1|WP_014743112.1|5167791_5169660_-|molecular-chaperone-DnaK	gnl|CDD|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_017955.1|WP_014743105.1|5160159_5161428_+|FAD-binding-oxidoreductase	gnl|CDD|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	5.2061e-51
NC_017955.1|WP_014743107.1|5162921_5164676_+|L-lactate-permease	gnl|CDD|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	2.48474e-146
NC_017955.1|WP_083870122.1|5164694_5165222_-|MarR-family-transcriptional-regulator	gnl|CDD|224759	COG1846, MarR, Transcriptional regulators [Transcription].	4.11873e-12
NC_017955.1|WP_014743102.1|5155882_5156689_-|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.48249e-65
NC_017955.1|WP_014743115.1|5172935_5173901_+|DUF389-domain-containing-protein	gnl|CDD|129372	TIGR00271, Uncharacterized_protein_MJ0678, uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.	1.19208e-32
NC_017955.1|WP_014743118.1|5176087_5176696_-|dCTP-deaminase	gnl|CDD|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	3.11471e-94
NC_017955.1|WP_041795604.1|5173944_5175243_+|MFS-transporter	gnl|CDD|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.97213e-105
NC_017955.1|WP_193375808.1|5158741_5160160_+|FAD-binding-protein	gnl|CDD|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	2.17755e-177
NC_017955.1|WP_014743120.1|5178012_5178993_+|arsenic-resistance-protein	gnl|CDD|223869	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism].	4.29527e-45
NC_017955.1|WP_014743106.1|5161427_5162828_+|glycolate-oxidase-subunit-GlcF	gnl|CDD|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	8.2586e-113
NC_017955.1|WP_014743113.1|5169948_5172240_+|(Fe-S)-binding-protein	gnl|CDD|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.45241e-79
NC_017955.1|WP_014743119.1|5177504_5177912_-|MerR-family-transcriptional-regulator	gnl|CDD|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.05091e-24
NC_017955.1|WP_041795601.1|5166997_5167729_-|nucleotide-exchange-factor-GrpE	gnl|CDD|237632	PRK14164, PRK14164, heat shock protein GrpE; Provisional.	1.10303e-43
NC_017955.1|WP_014743103.1|5156919_5158521_+|malate-synthase-A	gnl|CDD|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NC_017955.1|WP_166503930.1|5175239_5175986_-|methylase	gnl|CDD|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	4.22627e-15
NC_017955.1|WP_014743100.1|5153890_5155135_+|CoA-transferase	gnl|CDD|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	9.33568e-148
NC_017955.1|WP_014743101.1|5155131_5155902_+|enoyl-CoA-hydratase/isomerase-family-protein	gnl|CDD|180424	PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.	2.11185e-128
NC_017955.1|WP_014743109.1|5165257_5165689_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.15403e-40

Protein sequences

>NC_017955.1|WP_014743109.1|5165257_5165689_-|helix-turn-helix-transcriptional-regulator
MSLPEPGRAFAEDAPVFVISVAAELAGMHAQTLRQYDRLGLVSPGRTAGGGRRYSPRDVALLREVQRLSQEDGVNLAGIKRIIELESRVEALQGRVAELLDELELSETRRIAAESAVSAAYRRDLVPRTSSSALVVWRPTGHP
>NC_017955.1|WP_083870122.1|5164694_5165222_-|MarR-family-transcriptional-regulator
MNGVTVDSAPRVSVERPLVDSTPDCHAAFVVLEREIALLLRRSRAIQGRLAGQLHADLDGAAYGLLVLLDDAGPLRASDVVARLGLDKSTVSRQVASLVALGLVDRAADPDDGRAQVLSTSPEGHRRLSQLRDARRERWEADLAGWETTDVATLAQLLGRLNRLGEEREAEATRS
>NC_017955.1|WP_014743107.1|5162921_5164676_+|L-lactate-permease
MFEQVLDPVNGSLGLSALCAVLPLLTLFVLLGALRVKAWIAGLVALLVALLVAVVLYSMPVDQALLSATEGAAFGFFPILWIVLNAIWVYNLTVETGHFDVLRRSFEKVSPDQRIQAIIIAFCFGALLEALAGFGTPVAITVVMLMALGFAPLKAAAVALIANTAPVAFGALATPIVTLATVTSGVNDDPGLTVDNLGAMVGRQTPILAIVVPLVLVFVVDGKRGVRQTWPVALVSGLAFALAQFVAANYISVPLTDIIAALVSAAAIVAMLRVWTPAESPDLAREAVAAGGGRHTGEVGAGATAGEELGDRPGSQGPRDPGAPASREDGPVVPDTRGEVLKAYAPYLIIIVIFSIANISAVKTALAASPWTTVFAWPGLDVFGPGSDTELASTSYTFNWLPAAGTLMILAGILTMVVLRISPARGLRAYGRTYAELKWAIVTVMAVLALAYVMNQSGQTTSLGAWLAQTGAFFAFLSPILGWIGVAVTGSDTSANALFGALQVQTAAGAGLDPVLLAAANTSGGVLGKMVSPQNLAIAAAAVGMAGKEGELFRKVFGWSLVLLLGMCVIVVLQSTGALSWMIP
>NC_017955.1|WP_014743106.1|5161427_5162828_+|glycolate-oxidase-subunit-GlcF
MGQPTTVQAEGPQDDPRTAGVRASGPVPIGTPTVRPAFDDEHPPSAELISDCVHCGFCLPTCPTYTLWGEEMDSPRGRIDLMKAGLEGAPLTDTMVQHFDACLGCMACVTACPSGVQYDKLIEATRVQVERHHTRSPGDRAMRAAIFALFPYKRRLRALRGPLRAYQASGLPKVVRSSGLLDRLAPKLAAMEGLAPVLEKREKLPSRVPAVGERRAVVGMLTGCVQGEFFPGVNAATARVLAAEGCEVVIPRAQGCCGALSVHNGRQEEAERFARATIDAFEAAGVQTVVVNAAGCGSSMKEYADVLADDPAYAERARTFAASVRDVSELLAELGTVAERHPLEVTVAYHDACHLGHAQGIRQQPRALLREVPGLQLREIPEAEICCGSAGIWNVLNPEPARELGDRKARNIASTGAELLVTANPGCLMQVSSSLQRQGTRIGLAHTIEVLDASIRGLPVSTLGPQ
>NC_017955.1|WP_014743105.1|5160159_5161428_+|FAD-binding-oxidoreductase
MTTVSLDAARSALSSACGDVTDAGPADAVDGVPATLVARPGTTAETAAVLQAAAGHGLTVVPRGRGTKLSWGRPPERADLVLDMSRMSAVLDHAAGDLIVHTEAGTLLADVQRTVGQAGQRLSLDEVVPGSSVGGALATNTSGPGRLVVGTARDLLLGVTLVRADGVVAKAGGRVVKNVAGYDLGKLVIGSFGTLAVITEAVFRLHPLPAARRFVTVPFGTAEDAAALVQTMVHAQVVPAAVEVEWRVDGAGTVGVELGGTPAGVEARTAATLQLLGAGAEEAGGPPPGWGVLPWRDDPDLPEVGLKLTCALSGLAAVLDAARRAAADAGVPLTLRGSGGAGVLYGALAADAPVEAVAAVVERTRTACTAHGGSLVVLEAPASVRAAVDTWGPVPAIDLMRRVKEQFDPERRLAPGRFVGGI
>NC_017955.1|WP_193375808.1|5158741_5160160_+|FAD-binding-protein
MPDTGVISDPTQLRTYECDGLAHYRVTPALVVLPETTEQLAGVVRACAEHGVPFVARGSGTGLSGGALPRADGVLVVTSRMRTIREVRRADQRAVVEPGVINLDVTRAATGEGYYYAPDPSSQQICSIGGNLAENSGGAHCLKYGFTSNHVLGAELVTPQGDVVQLGGLAPDSPGYDLLGTVVGSEGTLGIATTATVRLVRLPEEVRTLLVGFRSTDDAGAATSAIIGSGVLPAAIEMMDALAIEAAEAAVHCNYPDGAGAVLVIELDGPSAEVQHEYDVVERLCQEHGSFELRLAIDATERALIWKGRKSAFAAVGRISPDYIVQDGVIPRTALPEVLRAIADLSSSSGVRVANVFHAGDGNLHPLVLFDDAKPGAGDAAEKVSGAILDLCISHGGAITGEHGVGVDKAAYMPKMFTDDDLDTMQLVRCAFDPGNISNPGKIFPTPRLCGEVPGKRKHAHPLVEAGLADAF
>NC_017955.1|WP_014743103.1|5156919_5158521_+|malate-synthase-A
MSTVDGVEITGPMGPRFEEVLTPQALELIARLHRELNGRRLERLQARTERVQALADGGTLDFLPETASIREDDSWRVAPPAPGLVDRRVEMTGPTDRKMTINALNSGAKCWLADQEDANSPLWENVVNGPLNLMDSIDRTIDFTSPQGKSYELKPDDELPTIIVRPRGWHLPEKHITVDGEQTSGSLVDFALYLVSCGKKQVDRGQGPYFYLPKMESHLEARLWNDAFVIGQEHVGIPRGTIRATCLIETYPAAFEMEEILYELREHSSGLNAGRWDYLFSVIKTFRTRGADFTLPDRNSITMTVPFMRAYTELLVRTCHKRGAHAMGGMSAFIPSKDPAKNEFAFNKITEDKTREANDGFDGSWVAHPGMVQTAMDAFDKVLGDRPNQLDKLREDVHVTAADLLNVKATPGEVTEAGLRANVSVGIQYVESWLRGSGAAGINGLMEDAATAEISRSQVWQWLHNGVTLSDGQPVTTELVQRVIEEEVAAIASAKGDAYSSGRWDDARALFTEMALGDEYNDFLTVPAYERMP
>NC_017955.1|WP_014743102.1|5155882_5156689_-|IclR-family-transcriptional-regulator
MAEISGPGSNGSDGGVQSLERAFLLLELMAEDGGEVALSRLAVDSGLPLSTIHRLVRTLVARGYVRQLPSRRYVLGPRLIHLGESSSRTLGTWARPHLGELVDATGETANLAMLDGDRVVYVAQVPSRHSMRMFTEVGRRVHLHCTGVGKALLAQLPAATARELLVRGGMPRRTPLTVTDPDEMMARLPQIAAQGYALDDGEQETGVRCVAVPVLGGPLMTALSVSGPEGRVPMESVPGIVGQLQAAAAALAAELREDGARALSGRSS
>NC_017955.1|WP_014743101.1|5155131_5155902_+|enoyl-CoA-hydratase/isomerase-family-protein
MSELEVTQDGGVLTVLFNRPEARNAMTFAMYEGLEEACARADDDASVRVLVLRGAGGRAFVAGTDIAQFLDFTSGEDGIAYEARIERVVNRLEDVTVPTVAAVEGSCVGGGLALAAACDLRVATASSRFGVPIARTLGNCLSMNSYSLLVHHLGPGRTLDMLLRARLLSADDAHAAGFVGEVVPDGELDPALAALLETLLAHAPLSMKAAGQAVARLRRAALPDGDDIVREVFGSADFRAGVRAFVDRGQVSWTGR
>NC_017955.1|WP_014743100.1|5153890_5155135_+|CoA-transferase
MGTTGDPAEADVSTSPEPGDQPPLTGITVLEVGVFMAAPYASMQLADLGARVVKVEDPRAGDPVRASGPFLDGESSPYLRLNRNKESVALDLKSAAGKEAFLALARTADVVIENLRPGAMARLGLDAAGIWAVNPRVICASGSGWGQDGPLAPLPGLDIMAQARSGIMSITGTPGGEPVKVGVPVCDLVCGLYLALAVTAALRERDRTGRGQSIDVSLFEAGVSLAVWEAGRYFATGEVGGPLGSAHQSQAPYQAFQTADGWITIGANTPNTWAGLCRTLDMADELADPGYGDATRRHARRGELLDVVESRTRGRTTDELLAALGAAGVPCAPINDYGQVFTDAHLAARDFFWDAPHPALGPVRQIGSPMRFSRTPAVRDHAGPPLGADTRAVLERSGVPAEVVDAVCTGEGRA
>NC_017955.1|WP_041795601.1|5166997_5167729_-|nucleotide-exchange-factor-GrpE
MSQQDEQPPRVVIRDKRRIDPTSGAARVPAEQEPISARPAQGDPRETVPEQGEQMSEQFSETPADLVDEPVGGVVVDDATRQLAERTEDLQRVTAEYANYRRRVERDRVLVVDQAAERFAGQLFPIVDDIERARDHGDLTGAFKVVADRVLGLLEGLGVEAFGAPGDPFDPALHEAVLHDTSPEVSEPTATTVLRPGFRRGDRVLRTAMVGVTDPESPAPAAAEPASADAPADEQPGAGPAAG
>NC_017955.1|WP_014743112.1|5167791_5169660_-|molecular-chaperone-DnaK
MARAVGIDLGTTNSVVAVLEGGEPTVIANSEGARTTPSVVAFAKNGEVLVGQSAKNQAVTNVDRTIRSVKREIGTTWKTGDIDGKQYTPQEISARVLQKLKRDAETYLGEPVTEAVITVPAYFEDAQRQATKEAGEIAGLNVLRIVNEPTAAALAYGLDKGETEQTILVFDLGGGTFDVSLLEIGDGVIEVKSTAGDNKLGGDDWDERVVKHLVQTFNAQSGIDLSKDKLAMQRLREAAEKAKIELSGAQSTNVNLPYITAGADGPLHLDVTITRAEFQRLTQDLLDRTKAPFNQAIRDAGVKVGDIDHVVLVGGSTRMPAVTDLVRELTGGKEPNKGVNPDEVVAVGAALQAGVLRGEVKDVLLLDVTPLSLGIETKGGIMTKLIERNTTIPTKRSEIFTTADDNQPSVQIQVFQGEREMAAYNKKLGMFELTGLPPAPRGVPQIEVAFDIDANGIVHVHAKDLGTGKEQSMTITGGSALPKDDIERMMRDAEAHAEEDKKRRDEAETRNLAESLQYQTEKFLAENGDKIPADKKEELGEALTELRSSLGGSDIAAIKTAQEKVARVSQEVGGALYAQAQADGAGAPGAGDAGFDTGATGSTASDDDVVDAEIVDEDPDKK
>NC_017955.1|WP_014743113.1|5169948_5172240_+|(Fe-S)-binding-protein
MGPLQIVLGTLAVLLLVVSVVYATKAVRAMLRIFRTGQPDPTRSGDVGPRLKTLAVESLGHTRMLKWSAIGAAHWFVFLGFYGLFLTLVEAFGEVWDPEWHLPLIGEWSLWNLFVDVIGTGTVLGIVYLIIRRQLDHPRRKGRASRFAGTNEGRGYFVEAVVLTIGLCILLIRAVKISAGLTDAPGWSHPVSGALSNLVPGNPDLLSVIAFVKIVVSLVWLITISRILNMGVAWHRFSAFFNIYWKREASGGVALGPLQPMMSAGKPIDFEDPGEDDLFGRGKIEDFTWKGMLDFTTCTECGRCQSQCPAWNTGKPLSPKMVIMDLRDHLYAKAPYLTGATKASDEAPNFADFTTLEPSAEQEWASGYARIEGTNDAQAHRPLVGTLEEGGVIDPDVLWSCTNCGACVEQCPVDIEHVDHIMDMRRYQTMIESSFPSEAGVMMRNLENRGNPWGVGGNVREDWMKDLDFEVRQVDGAIDDDVEYLFWVGCAGAIDDRAKKVTKAVAELLHMAGVEFAALGNGETCSGDPARRMGNEFLFQQLAMENVETLNAVFEERPAGRRKIVATCPHCFNSINREYPQLGGDYDVVHHTQLLGQLVEEGRLTPVTPVDRKVTYHDPCFLGRHNKVYTPPREILDSVQGLTTQEMHRCKDRGFCCGAGGARMWMEEKIGKRINVERTEEALDLDPDVISTACPFCITMLSDAVTSKKQAGEAKEHVEVLDVSQILLRSLAPVGAPGAESGPGVGTEPDDPAGTGSPATQHE
>NC_017955.1|WP_014743114.1|5172312_5172873_+|hypothetical-protein
MSSFFGGVRGREDPELAAGNRRTRLHYARDVNDQRALADDTPPIRRGRNWTWFVVAAVVMAVLGFAGSRGAEEVPITADCDTPAIAVASSAVTAGEALRFRLTGPDDTDYVVTLDGAPVRGDAGSRVSYTQTAAGPALRLQQCLSPTLLLATPAGDGPHQLAVLRLAADGTTSEVAATTLTVSGTR
>NC_017955.1|WP_014743115.1|5172935_5173901_+|DUF389-domain-containing-protein
MLLHLRITAPPDRSDDVRALLDSDPGVAHLAVVTGGSVRPPGDLFLVDVARESADQLIEALRQLHVDRDGGIAMEAVDAAVSRPAEEAERRAPGDGSDAVVWEQVVRSTAADAALSVSYLTFLTIATLLAAVAIVNDSAPLVIGAMVLGPEFGPLAALAVALVHRRRAMGVQAVVSLVVGFAVAIAVTVVAALAGRWLGWFGTDLLAADRPATGFITQPDRWSLVVAVLAGIAGVLSLTSARSGALVGVFISVTTVPAAGEIALAIALGSGTDLREAATQLGVNLVGILLAATATLLLQKAVWHRVPQVVPRVQRVGHARN
>NC_017955.1|WP_041795604.1|5173944_5175243_+|MFS-transporter
MTAAAPPRPPVQRRGLVLVAAAIVLTGFNLRTAVNSIGPVLEEIEQGLGISSGLAGLITSMPLLCFAVIGFAGPPLAARYRDGHVLAAALIVMTAGLLVRVAVPAVAFFLVGTVLTMVGGALGNVLLPSLVKKWFPDRTGLLVGAYSTSLAVGGAVAAVSTAPIAEAVGADGWRWALGIWAVFAFLAALPWLLVPRHPGAGSSARRPVRLRALTRSRLAWVMAAFFGLQAVEAYVVVGWTAQYLRDEGMSASSAGVLVGVNALIVIPLNAVVPTAAVRQRLQRPMLVGFVCCYLAGWTGLLLAPLAVTWLWVSLLGVGMGTFSMVLTLIGLRGRTPESVAALSTVSQGWGYALAGAGPLLVGLLRGVTGGYGGMFVIAYASTAGLLVSGWMVCRERYVDDEVPGLFGDRSPADGDPAVEVAGTEPAVVVRER
>NC_017955.1|WP_166503930.1|5175239_5175986_-|methylase
MPQPSGDQGGNGSFDCAEESAHYAFSVQLLLTQYAALVPWQTEGVAELGSGDARAIAHVVRAVPGLTVHGTDISAASVERARRTIDDLGVGDRYTVELGDFFAWADSPEGARTSTVIANPPYIPAPDGDILMPELWGGWYGNDLVLRLLKAGFDHLLVALPSYSDPAATLAAAGELGYRVANFLAMGLEFGAYSSEPKVAEHIARLTAEGHGWAGEGSYVVAVALLTRSPEAPRDRSTELLRALQLSV
>NC_017955.1|WP_014743118.1|5176087_5176696_-|dCTP-deaminase
MLLSDRDIRAALADGRLGLAPYDAAMVQPSSIDVRLDRFFRVFNNARYTHIDPAQQQDDLTTLVEPNGDEPFVLHPGEFVLGSTLEVVSIPDDLAARLEGKSSLGRLGLLTHSTAGFVDPGFSGHITLELSNVANLPITLWPGMKIGQLCLFQLSSAAEHPYGSAVYGSRYQDQRGPTPSRSFRNFSRAETRPAAAGDALPS
>NC_017955.1|WP_014743119.1|5177504_5177912_-|MerR-family-transcriptional-regulator
MRISEVSRRSGVPATTLRYYETIGLIAARRASNGYRDYDENVLGRLDLIEASKELGLPLEEIARHLDALQTRSCTEVRDSLLPLLARQLRRIEEKRTRLDRLSRRLRAASAGLASCPDRDELCSSECALRLTATT
>NC_017955.1|WP_014743120.1|5178012_5178993_+|arsenic-resistance-protein
MTSPVAWLERHQIGLYLVAIAAGGAIGVFLPAAERVEVAIYPVLGLLLYATFLGVPFASIGAALRDGRFLAAVLVLNFAVVPLVAYGLSRFVADRPALLFGVLLVLLTPCIDYVIVFSGLAGGASERLLAAAPLLMLAQVLLLPVYLLLFIGPEGVAVVDVGPFAEAFLVLIVVPLAAAAATQALAARSRAGRNLESAMLAAMVPLMMATLLVVVASQAGTVRMQASQLLILVPIYAGFLVVMAVLGVGAGRLFGLDVPSRRALVFSGATRNSLVVLPLALALPASLALAPVVVVTQTLVELIGMVIYVRLVPTLVPQRRMPRTLP

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	277087-277116	4	0.867
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	262396-262425	4	0.867
NC_017955_3	3.4|2275934|26|NC_017955|CRISPRCasFinder	2275934-2275959	26	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2600903-2600928	5	0.808
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1080246-1080275	5	0.833
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	732827-732856	5	0.833
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	96558-96587	5	0.833
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	336185-336214	6	0.8
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	MN813685	Gordonia phage Gudmit, complete genome	13238-13267	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	421684-421713	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	330853-330882	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	624216-624245	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2573351-2573380	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	294411-294440	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	306783-306812	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	298602-298631	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	2024879-2024908	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	299177-299206	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1288254-1288283	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	188000-188029	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	298602-298631	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	291006-291035	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	290995-291024	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	298614-298643	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	298635-298664	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	298601-298630	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	311110-311139	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	294430-294459	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	294429-294458	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	311105-311134	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	311111-311140	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	294426-294455	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP024896	Amycolatopsis sp. AA4 plasmid unnamed2, complete sequence	44046-44075	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	63253-63282	6	0.8
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	750925-750954	6	0.8
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_CP048642	Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence	101293-101322	7	0.767
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	29807-29836	7	0.767
NC_017955_4	4.2|2580448|36|NC_017955|PILER-CR	2580448-2580483	36	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2536716-2536751	7	0.806
NC_017955_4	4.2|2580448|36|NC_017955|PILER-CR	2580448-2580483	36	MT952005	Aeromonas phage BUCT551, complete genome	10709-10744	7	0.806
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	879932-879961	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	946701-946730	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	866424-866453	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	933194-933223	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	245387-245416	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	534288-534317	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	48907-48936	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	687060-687089	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1331907-1331936	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	523746-523775	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	28181-28210	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	293055-293084	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	193907-193936	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_012725	Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence	11860-11889	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_012720	Burkholderia glumae BGR1 plasmid bglu_3p, complete sequence	9689-9718	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP035902	Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence	56122-56151	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP006993	Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence	68679-68708	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	367524-367553	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	19394-19423	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP045089	Burkholderia glumae strain GX plasmid pWSGX1, complete sequence	152716-152745	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP047317	Burkholderia glumae AU6208 plasmid pwszb, complete sequence	63917-63946	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	MN586053	Arthrobacter phage BeatusComedenti, complete genome	21867-21896	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	MN062714	Microbacterium Phage DirtyBubble, complete genome	35031-35060	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_031254	Arthrobacter phage Kitkat, complete genome	21987-22016	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_041927	Sphingobium phage Lacusarx, complete genome	71707-71736	7	0.767
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	MT024860	Microbacterium phage Stromboli, complete genome	35401-35430	7	0.767
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	211273-211302	8	0.733
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	MN908694	Microbacterium phage RubyRalph, complete genome	44967-44996	8	0.733
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	MH825699	Streptomyces phage Darolandstone, complete genome	17488-17517	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	157809-157838	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1787685-1787714	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	564484-564513	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	121532-121561	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	472221-472250	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1464514-1464543	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	362507-362536	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	483422-483451	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	483423-483452	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1602295-1602324	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	464159-464188	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1618047-1618076	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1482416-1482445	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	222161-222190	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	13174-13203	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	468408-468437	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	619625-619654	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	191215-191244	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	469669-469698	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	1711128-1711157	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	481143-481172	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	465577-465606	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	464668-464697	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	612587-612616	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	461694-461723	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	465321-465350	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	469687-469716	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	482930-482959	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	465393-465422	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	462710-462739	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	482930-482959	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	465393-465422	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	482930-482959	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	462713-462742	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	482934-482963	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	465393-465422	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	465393-465422	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	465393-465422	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1628210-1628239	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	462713-462742	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	481124-481153	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	481080-481109	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	473288-473317	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	472901-472930	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	463904-463933	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	462713-462742	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	482930-482959	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	553681-553710	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	462713-462742	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	462713-462742	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	465395-465424	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1609088-1609117	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1609088-1609117	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1053802-1053831	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	835278-835307	8	0.733
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	698291-698320	8	0.733
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_KY000033	Agrobacterium rhizogenes strain 26-59 plasmid pRi_26-59, complete sequence	149825-149854	9	0.7
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_CP019703	Agrobacterium rhizogenes strain K599 (NCPPB2659) plasmid pRi2659, complete sequence	94358-94387	9	0.7
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NC_010841	Agrobacterium rhizogenes plasmid pRi2659, complete sequence	149962-149991	9	0.7
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	375106-375135	9	0.7
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NC_002575	Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence	184886-184915	9	0.7
NC_017955_4	4.1|2580385|30|NC_017955|PILER-CR	2580385-2580414	30	NZ_KY000038	Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence	16989-17018	9	0.7
NC_017955_6	6.1|5166536|30|NC_017955|CRISPRCasFinder	5166536-5166565	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2124723-2124752	9	0.7
NC_017955_4	4.2|2580448|36|NC_017955|PILER-CR	2580448-2580483	36	NZ_CP018865	Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence	195060-195095	12	0.667

1. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 4, identity: 0.867

ccggcccggccggcaccgggggcaccgccg-	CRISPR spacer
ccggcccggcccgcacc-ggggcccggccgc	Protospacer
*********** ***** ***** * **** 

2. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 4, identity: 0.867

ccggcccggccggcaccgggggcaccgccg-	CRISPR spacer
ccggcccggccggcaccagggacg-cgccgc	Protospacer
*****************.***.*. ***** 

3. spacer 3.4|2275934|26|NC_017955|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.808

ctgaccccgacgccgtccccgttcct	CRISPR spacer
acgaccccgacgccgtgctcgttccg	Protospacer
 .************** *.****** 

4. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.833

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
gcggcccggccggcaccgcggccaccagcg	Protospacer
 ***************** ** ****. **

5. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.833

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
gcggcccggccggcaccgcggccaccagcg	Protospacer
 ***************** ** ****. **

6. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
caggcccggccggctccgggggctccgatg	Protospacer
* ************ ******** *** .*

7. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 6, identity: 0.8

tccgggcag---cagggcggcgggtacggccag	CRISPR spacer
---gcgctggttcagggcggcgggtatggccag	Protospacer
   * ** *   **************.******

8. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to MN813685 (Gordonia phage Gudmit, complete genome) position: , mismatch: 6, identity: 0.8

---tccgggcagcagggcggcgggtacggccag	CRISPR spacer
ctgcccgg---tcaggccggcgggtacggccag	Protospacer
   .****    **** ****************

9. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ccggcccgggcggcacccggggcccgcacg	Protospacer
********* ******* ***** *   **

10. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

11. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

12. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tcgcgctggccggcatcggcggcaccgccg	Protospacer
.**  *.********.*** **********

13. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

14. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

15. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

16. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

17. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

18. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

19. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

20. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

21. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

22. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

23. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

24. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

25. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

26. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

27. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

28. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

29. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

30. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

31. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

32. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

33. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

34. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

35. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

36. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

37. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

38. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

39. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcacggccggcaccgggcgcacttcgg	Protospacer
 **** ************** ****. * *

40. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP024896 (Amycolatopsis sp. AA4 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
gcgtcccggccggcacccggggcaaggtcg	Protospacer
 ** ************* ******  *.**

41. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

ccggcccg-gccggcaccgggggcaccgccg	CRISPR spacer
-cggtgagtgccggcaccggaggcaccgccc	Protospacer
 ***.  * ***********.********* 

42. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acggcccgggcggcaccgggggagacgacg	Protospacer
 ******** ************ . ** **

43. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_CP048642 (Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
ggggatcagcagggcggcgagtgcggccag	Protospacer
   *. *************.**.*******

44. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 7, identity: 0.767

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
ggcaggccgcagggcggcgggaacggcgat	Protospacer
  *.*** ************* ***** * 

45. spacer 4.2|2580448|36|NC_017955|PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

cagccaggacagggcggccagggcggccagcccggt	CRISPR spacer
cggggcggacagggtggccagggcggccagcgcgat	Protospacer
*.*   ********.**************** **.*

46. spacer 4.2|2580448|36|NC_017955|PILER-CR matches to MT952005 (Aeromonas phage BUCT551, complete genome) position: , mismatch: 7, identity: 0.806

cagccagga---cagggcggccagggcggccagcccggt	CRISPR spacer
---ccagggcaccagggcggccagggcggccagggcggc	Protospacer
   *****.   *********************  ***.

47. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ccggcccggacggcacctggggcctgggct	Protospacer
********* ******* ***** . * * 

48. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg-----	CRISPR spacer
ccggcccggccggcgccggg-----cgctggtggt	Protospacer
**************.*****     ***.*     

49. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg-----	CRISPR spacer
ccggcccggccggcgccggg-----cgctggtggt	Protospacer
**************.*****     ***.*     

50. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ccggcccggacggcacctggggcctgggct	Protospacer
********* ******* ***** . * * 

51. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tgatgagc---gccggcaccggcggcaccgccg	Protospacer
   . .**   *********** **********

52. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tgatgagc---gccggcaccggcggcaccgccg	Protospacer
   . .**   *********** **********

53. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ccggcccggccggaaacgggggcggtgatg	Protospacer
************* * *******. .* .*

54. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tgatgagc---gccggcaccggcggcaccgccg	Protospacer
   . .**   *********** **********

55. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tcggcgcggccggcaccgagggcacgtggg	Protospacer
.**** ************.******    *

56. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tgatgagc---gccggcaccggcggcaccgccg	Protospacer
   . .**   *********** **********

57. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tgatgagc---gccggcaccggcggcaccgccg	Protospacer
   . .**   *********** **********

58. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ccggcccggccggcaccggcagcaggatgg	Protospacer
******************* .***  .. *

59. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tgatgagc---gccggcaccggcggcaccgccg	Protospacer
   . .**   *********** **********

60. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_012725 (Burkholderia glumae BGR1 plasmid bglu_4p, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cgattggc---gccggcaccggcggcaccgcca	Protospacer
   ..***   *********** *********.

61. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_012720 (Burkholderia glumae BGR1 plasmid bglu_3p, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cgattggc---gccggcaccggcggcaccgcca	Protospacer
   ..***   *********** *********.

62. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP035902 (Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cgattggc---gccggcaccggcggcaccgcca	Protospacer
   ..***   *********** *********.

63. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP006993 (Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cgatcccggccggcaccgagggcatcgtct	Protospacer
* . **************.*****.**.* 

64. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cggcgccggccggcaccgcgagcaccgcga	Protospacer
* *  ************* *.******* .

65. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ctggcccggccggcgccggcggcacggagc	Protospacer
*.************.**** ***** *   

66. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP045089 (Burkholderia glumae strain GX plasmid pWSGX1, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cgattggc---gccggcaccggcggcaccgcca	Protospacer
   ..***   *********** *********.

67. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP047317 (Burkholderia glumae AU6208 plasmid pwszb, complete sequence) position: , mismatch: 7, identity: 0.767

---ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
cgattggc---gccggcaccggcggcaccgcca	Protospacer
   ..***   *********** *********.

68. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to MN586053 (Arthrobacter phage BeatusComedenti, complete genome) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ctgtcatccccggcaccggcggcaccgccg	Protospacer
*.* * .  ********** **********

69. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to MN062714 (Microbacterium Phage DirtyBubble, complete genome) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
gctacaaggccggcaccgtgggcaccgtcg	Protospacer
 * .*  *********** ********.**

70. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_031254 (Arthrobacter phage Kitkat, complete genome) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ctgtcatccccggcaccggcggcaccgccg	Protospacer
*.* * .  ********** **********

71. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_041927 (Sphingobium phage Lacusarx, complete genome) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
acttcccgaccggcaccggcggcaccggca	Protospacer
 *  ****.********** ******* *.

72. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to MT024860 (Microbacterium phage Stromboli, complete genome) position: , mismatch: 7, identity: 0.767

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
gctacaaggccggcaccgtgggcaccgtcg	Protospacer
 * .*  *********** ********.**

73. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 8, identity: 0.733

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
ttcgggcagcagggcggcgggcaccttgtc	Protospacer
*.*******************.**  .   

74. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to MN908694 (Microbacterium phage RubyRalph, complete genome) position: , mismatch: 8, identity: 0.733

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
ggtcagcagcagggtggcggctacggcccg	Protospacer
  . .*********.***** ******* *

75. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to MH825699 (Streptomyces phage Darolandstone, complete genome) position: , mismatch: 8, identity: 0.733

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
tgtgggcagctgggcggcgggtaccttccc	Protospacer
* .******* *************  .*  

76. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

77. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
gcggcccggccggcggcgggggcacgcttt	Protospacer
 *************. *********  .. 

78. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
tcatgagcgccggcaccggcggcaccgccg	Protospacer
.*.     *********** **********

79. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

80. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

81. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

82. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

83. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

84. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

85. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

86. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

87. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

88. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

89. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

90. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

91. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

92. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

93. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

94. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

95. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

96. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

97. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

98. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
agctctcggccgacaccgcgggcaccgccc	Protospacer
    *.******.***** ********** 

99. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
agctctcggccgacaccgcgggcaccgccc	Protospacer
    *.******.***** ********** 

100. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

101. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

102. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

103. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

104. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

105. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

106. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

107. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

108. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

109. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

110. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

111. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

112. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

113. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

114. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

115. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

116. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

117. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

118. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

119. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

120. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

121. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

122. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

123. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

124. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

125. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

126. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

127. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

128. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

129. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

130. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

131. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

132. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

133. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

134. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctag	Protospacer
 . ***************** ***.* . *

135. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

136. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

137. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

138. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

139. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

140. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.733

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
atcgcccggccggcaccgggcgcatcctgg	Protospacer
 . ***************** ***.* . *

141. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_KY000033 (Agrobacterium rhizogenes strain 26-59 plasmid pRi_26-59, complete sequence) position: , mismatch: 9, identity: 0.7

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
attgtgcagcagggcggcgggtgcggattc	Protospacer
 ..* *****************.*** .  

142. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_CP019703 (Agrobacterium rhizogenes strain K599 (NCPPB2659) plasmid pRi2659, complete sequence) position: , mismatch: 9, identity: 0.7

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
attgtgcagcagggcggcgggtgcggattc	Protospacer
 ..* *****************.*** .  

143. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NC_010841 (Agrobacterium rhizogenes plasmid pRi2659, complete sequence) position: , mismatch: 9, identity: 0.7

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
attgtgcagcagggcggcgggtgcggattc	Protospacer
 ..* *****************.*** .  

144. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.7

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
gaacagcagcagggcggcgggcccggccgc	Protospacer
    .****************. *****. 

145. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NC_002575 (Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence) position: , mismatch: 9, identity: 0.7

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
attgtgcagcagggcggcgggtgcggattc	Protospacer
 ..* *****************.*** .  

146. spacer 4.1|2580385|30|NC_017955|PILER-CR matches to NZ_KY000038 (Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence) position: , mismatch: 9, identity: 0.7

tccgggcagcagggcggcgggtacggccag	CRISPR spacer
attgtgcagcagggcggcgggtgcggattc	Protospacer
 ..* *****************.*** .  

147. spacer 6.1|5166536|30|NC_017955|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ccggcccggccggcaccgggggcaccgccg	CRISPR spacer
ttcctcattccggcaccggcggcaccgccg	Protospacer
..  .*   ********** **********

148. spacer 4.2|2580448|36|NC_017955|PILER-CR matches to NZ_CP018865 (Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence) position: , mismatch: 12, identity: 0.667

cagccaggacagggcggccagggcggccagcccggt	CRISPR spacer
gggccgggacagggcggcccgggcggccgaataacc	Protospacer
 .***.************* ********.. . . .