CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	0 crisprs	WYL	0	0	0	0
NC_019393	Alteromonas mediterranea DE1, complete sequence	0 crisprs	cas3,DEDDh,WYL,csa3,RT,Cas9_archaeal,PD-DExK,DinG,PrimPol	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

967494 : 982295

Escherichia_phage(33.33%)

integrase,transposase

attL 971245:971293|attR 996197:996245

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085929700.1\|967494_968662_+\|transposase	IS3-like element ISAma1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.6e-58	41.6
WP_012517417.1\|969390_969585_+	hypothetical protein	NA	NA	NA	NA
WP_015066337.1\|970159_970879_-	AAA family ATPase	NA	NA	NA	NA
971245:971293	attL	NA	NA	NA	NA
WP_015066338.1\|971493_972813_+\|integrase	tyrosine-type recombinase/integrase	A0A0R6PGY7	Moraxella_phage	2.4e-44	30.8
WP_015066339.1\|972972_974382_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_015066340.1\|974629_975328_+	DUF3800 domain-containing protein	Q71TB8	Escherichia_phage	5.7e-93	68.6
WP_015066341.1\|975327_975801_+	hypothetical protein	Q71TB7	Escherichia_phage	1.3e-40	52.0
WP_015066342.1\|976291_976780_+	hypothetical protein	NA	NA	NA	NA
WP_015066343.1\|976935_977157_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015066344.1\|977234_978233_+	replication initiation factor	NA	NA	NA	NA
WP_015066345.1\|978229_979405_+\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	8.5e-25	27.2
WP_015066346.1\|979474_980212_-	hypothetical protein	NA	NA	NA	NA
WP_015066347.1\|980434_980791_+\|transposase	transposase	NA	NA	NA	NA
WP_020744983.1\|980756_982295_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	9.5e-109	43.1
996197:996245	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1020903 : 1029608

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015066371.1\|1020903_1022196_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.5e-134	60.0
WP_012517444.1\|1022255_1023887_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.2e-147	50.2
WP_015066372.1\|1024023_1026615_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.4e-33	21.7
WP_012517446.1\|1026775_1027315_+	CinA family protein	B5TK85	Pseudomonas_phage	1.0e-25	45.2
WP_012517447.1\|1027435_1028482_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.5e-116	62.8
WP_015066373.1\|1028786_1029608_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-26	33.2

DBSCAN-SWA_3

1918565 : 1926921

Alteromonas_phage(28.57%)

integrase

attL 1913190:1913204|attR 1929178:1929192

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1913190:1913204	attL	NA	NA	NA	NA
WP_148290651.1\|1918565_1919828_+\|integrase	tyrosine-type recombinase/integrase	F1C5A4	Cronobacter_phage	1.9e-70	39.8
WP_015066947.1\|1919810_1920080_-	hypothetical protein	NA	NA	NA	NA
WP_015066948.1\|1920079_1920343_-	hypothetical protein	NA	NA	NA	NA
WP_015066949.1\|1920335_1920923_-	hypothetical protein	A0A1J0GWD6	Alteromonas_phage	6.6e-10	42.4
WP_015066950.1\|1920919_1921420_-	hypothetical protein	NA	NA	NA	NA
WP_015066951.1\|1921419_1921653_-	hypothetical protein	R4VVP5	Alteromonas_phage	6.6e-14	90.5
WP_015066952.1\|1921649_1922426_-	hypothetical protein	NA	NA	NA	NA
WP_015066953.1\|1922422_1922611_-	hypothetical protein	NA	NA	NA	NA
WP_080597428.1\|1922649_1923108_-	hypothetical protein	J7I0T4	Pseudomonas_phage	3.8e-13	65.5
WP_015066955.1\|1923869_1924259_-	hypothetical protein	G8C7U4	Escherichia_phage	4.2e-13	34.1
WP_015066956.1\|1924258_1926004_-	hypothetical protein	A0A2I7RHL2	Vibrio_phage	1.5e-70	38.7
WP_015066957.1\|1926006_1926921_-	RecT protein	A0A2I7RQF1	Vibrio_phage	2.3e-62	43.3
1929178:1929192	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1942292 : 1953621

Vibrio_phage(37.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015066989.1\|1942292_1942862_+	recombination protein ninG	A0A2I7RR86	Vibrio_phage	1.7e-50	53.0
WP_015066990.1\|1942883_1943402_+	hypothetical protein	NA	NA	NA	NA
WP_015066991.1\|1943531_1943750_+	hypothetical protein	NA	NA	NA	NA
WP_015066992.1\|1943895_1944195_+	hypothetical protein	NA	NA	NA	NA
WP_015066993.1\|1944381_1944810_+	hypothetical protein	A0A2I7QM25	Vibrio_phage	8.1e-26	45.3
WP_015066994.1\|1944818_1945052_+	hypothetical protein	NA	NA	NA	NA
WP_015066995.1\|1945048_1945564_+	hypothetical protein	A0A2I7RSZ4	Vibrio_phage	1.1e-13	41.8
WP_015066996.1\|1945635_1945908_+	hypothetical protein	NA	NA	NA	NA
WP_015066997.1\|1945910_1946207_+	hypothetical protein	NA	NA	NA	NA
WP_015066998.1\|1946218_1946773_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	1.8e-46	57.6
WP_015066999.1\|1946842_1948357_+\|terminase	phage terminase large subunit	A0A2H4J2I1	uncultured_Caudovirales_phage	4.2e-149	53.7
WP_148290653.1\|1948347_1950336_+	hypothetical protein	A0A218MLF5	uncultured_virus	7.6e-34	24.2
WP_015067001.1\|1950332_1950575_+	hypothetical protein	NA	NA	NA	NA
WP_015067002.1\|1950711_1951689_+	hypothetical protein	NA	NA	NA	NA
WP_015067003.1\|1951712_1952645_+	hypothetical protein	F8UBM2	Clostridium_phage	9.4e-27	31.1
WP_015067004.1\|1952712_1952934_+	hypothetical protein	NA	NA	NA	NA
WP_015067005.1\|1952949_1953621_+	hypothetical protein	A0A1B1ITG1	uncultured_Mediterranean_phage	1.4e-35	40.3

DBSCAN-SWA_5

2192314 : 2249625

Acinetobacter_phage(18.18%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015067135.1\|2192314_2194261_+\|protease	ATP-dependent zinc metalloprotease FtsH	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	2.3e-120	44.4
WP_015067136.1\|2194445_2195270_+	dihydropteroate synthase	NA	NA	NA	NA
WP_015067137.1\|2195279_2196623_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_015067138.1\|2196719_2197463_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_015067139.1\|2197473_2197920_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_015067140.1\|2198280_2200575_+	EAL domain-containing protein	NA	NA	NA	NA
WP_015067141.1\|2200769_2200928_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_015067142.1\|2201083_2201539_-	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_015067143.1\|2201749_2203093_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_015067144.1\|2203100_2204729_-	hypothetical protein	A0A1V0SBJ0	Catovirus	1.7e-07	24.1
WP_015067145.1\|2204880_2205411_+	DUF2878 domain-containing protein	NA	NA	NA	NA
WP_015067146.1\|2205431_2206136_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_015067147.1\|2206248_2207079_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_085929700.1\|2207818_2208986_+\|transposase	IS3-like element ISAma1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.6e-58	41.6
WP_020744917.1\|2208983_2209124_-	hypothetical protein	NA	NA	NA	NA
WP_041702717.1\|2209654_2210707_+	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.8e-29	29.9
WP_020743511.1\|2211148_2212663_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_015067151.1\|2212679_2213789_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.2e-40	32.3
WP_015067152.1\|2213785_2215033_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.8e-89	44.2
WP_015067153.1\|2215163_2216114_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_015067154.1\|2216160_2216715_-	HNH endonuclease	A0A1C3NFQ8	Phage_NCTB	4.6e-05	39.7
WP_015067155.1\|2217109_2219221_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_012518312.1\|2219396_2219690_+	DUF1244 domain-containing protein	NA	NA	NA	NA
WP_015067157.1\|2220374_2220587_+	hypothetical protein	NA	NA	NA	NA
WP_015067158.1\|2220700_2221465_+	hypothetical protein	NA	NA	NA	NA
WP_015067159.1\|2221576_2222272_+	hypothetical protein	NA	NA	NA	NA
WP_015067160.1\|2222765_2224019_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_015066045.1\|2224047_2224443_-	hypothetical protein	NA	NA	NA	NA
WP_015066046.1\|2224414_2225980_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.0e-37	28.9
WP_015066047.1\|2226003_2226339_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.9e-09	30.8
WP_015066048.1\|2226338_2226623_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_015067161.1\|2226808_2227480_+	hypothetical protein	NA	NA	NA	NA
WP_015067162.1\|2227587_2227818_+	hypothetical protein	NA	NA	NA	NA
WP_015067164.1\|2228915_2230070_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015067165.1\|2230639_2231617_-	hypothetical protein	NA	NA	NA	NA
WP_041702719.1\|2231732_2232023_+	DUF1244 domain-containing protein	NA	NA	NA	NA
WP_015067167.1\|2232560_2232743_-	hypothetical protein	NA	NA	NA	NA
WP_015067168.1\|2232824_2234333_+	ATP-binding protein	NA	NA	NA	NA
WP_015067169.1\|2234761_2235460_+	hypothetical protein	NA	NA	NA	NA
WP_015067170.1\|2235479_2236238_+	hypothetical protein	NA	NA	NA	NA
WP_015067171.1\|2236668_2237298_+	hypothetical protein	NA	NA	NA	NA
WP_015067172.1\|2237429_2238218_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_080597401.1\|2238227_2238515_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_085929700.1\|2238764_2239932_+\|transposase	IS3-like element ISAma1 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.6e-58	41.6
WP_041703271.1\|2240142_2240646_+	zf-TFIIB domain-containing protein	NA	NA	NA	NA
WP_015067174.1\|2240709_2241159_+	acyltransferase	NA	NA	NA	NA
WP_015067175.1\|2241191_2241782_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015067176.1\|2241889_2242360_+	hypothetical protein	T1S9H7	Salmonella_phage	1.3e-11	71.1
WP_015067177.1\|2242481_2242886_+	hypothetical protein	NA	NA	NA	NA
WP_015067179.1\|2243191_2243686_+	AAA family ATPase	NA	NA	NA	NA
WP_015067180.1\|2243916_2244234_+	hypothetical protein	NA	NA	NA	NA
WP_015067181.1\|2244267_2244666_+	hypothetical protein	NA	NA	NA	NA
WP_015067182.1\|2244686_2244911_+	hypothetical protein	NA	NA	NA	NA
WP_015067183.1\|2244931_2245189_+	hypothetical protein	NA	NA	NA	NA
WP_015067184.1\|2245266_2246316_+	hypothetical protein	NA	NA	NA	NA
WP_015067187.1\|2247602_2248235_+	TonB family protein	NA	NA	NA	NA
WP_012518755.1\|2248215_2249625_-\|transposase	IS66-like element ISAma4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

4566314 : 4577357

Organic_Lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012518686.1\|4566314_4569572_-	DEAD/DEAH box helicase	F2Y0S4	Organic_Lake_phycodnavirus	2.8e-09	22.5
WP_041702929.1\|4569568_4570366_-	hypothetical protein	NA	NA	NA	NA
WP_012518684.1\|4570384_4572526_-	N-6 DNA methylase	A0A220A2U4	Liberibacter_phage	5.9e-24	27.3
WP_012518683.1\|4572546_4574937_-	DEAD/DEAH box helicase	Q5YA94	Bacillus_phage	1.7e-24	26.1
WP_001083515.1\|4574938_4575136_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	1.2e-16	56.5
WP_012518682.1\|4575385_4577128_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	9.3e-60	32.2
WP_007146785.1\|4577114_4577357_-	AlpA family phage regulatory protein	A0A1V0E8E5	Vibrio_phage	1.5e-08	45.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage