CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	1 crisprs	csa3,cas3,DinG,RT	0	1	2	0
NZ_CP013138	Pseudoalteromonas sp. Bsw20308 chromosome, complete genome	5 crisprs	cas3,DEDDh,RT,DinG,csa3	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013139_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013139_1

816329-816472

Orphan

Consensus_repeat	Method
TGTAGGTGCGATTTTATATCGCGCTGTGTATTGTAGACGCGCAGCTTGCTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013139_1

>merge|NZ_CP013139|1|816329-816472|CRISPRCasFinder
TGTAGGTGCGATTTTATATCGCGCTGTGTATTGTAGACGCGCAGCTTGCTGGCATTAAAAGCGAAGCTTTTGAGTTTCGACGTAATTAATATGTAGGTGCGATTTTATATCGCGCTGTGTATTGTAGACGCTCAGCTTGCTGGC

>NZ_CP013139|1|1|816329-816472|CRISPRCasFinder
TGTAGGTGCGATTTTATATCGCGCTGTGTATTGTAGACGCGCAGCTTGCTGGC	ATTAAAAGCGAAGCTTTTGAGTTTCGACGTAATTAATA
TGTAGGTGCGATTTTATATCGCGCTGTGTATTGTAGACGCTCAGCTTGCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013139.1\|WP_033016400.1\|805443_806352_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP013139.1\|WP_007378989.1\|832260_833727_-\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP013139.1\|WP_007379003.1\|812851_813589_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP013139.1\|WP_007379066.1\|825385_825775_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP013139.1\|WP_081824564.1\|811068_812667_-\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP013139.1\|WP_007379009.1\|817660_818839_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP013139.1\|WP_007379065.1\|824967_825393_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NZ_CP013139.1\|WP_007379035.1\|804331_805093_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226913
NZ_CP013139.1\|WP_007379038.1\|807009_809190_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP013139.1\|WP_007379005.1\|814590_815835_+\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|377099
NZ_CP013139.1\|WP_083503362.1\|810126_810570_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NZ_CP013139.1\|WP_007378988.1\|830558_832067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013139.1\|WP_007379008.1\|818912_821882_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP013139.1\|WP_007379068.1\|826781_827879_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP013139.1\|WP_007379036.1\|805102_805423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013139.1\|WP_007379069.1\|828200_828686_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013139.1\|WP_007379007.1\|821874_823752_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013139.1\|WP_007379004.1\|813623_814361_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP013139.1\|WP_007379070.1\|828688_829822_+\|DUF1570-domain-containing-protein	unknown	unknown	gnl\|CDD\|284926
NZ_CP013139.1\|WP_007379034.1\|803506_804250_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792

Protein	Function_ID	Function_description	E-value
NZ_CP013139.1\|WP_033016400.1\|805443_806352_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.18651e-09
NZ_CP013139.1\|WP_007378989.1\|832260_833727_-\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP013139.1\|WP_007379003.1\|812851_813589_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	8.88485e-21
NZ_CP013139.1\|WP_007379066.1\|825385_825775_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	1.93658e-20
NZ_CP013139.1\|WP_081824564.1\|811068_812667_-\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP013139.1\|WP_007379009.1\|817660_818839_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.61302e-67
NZ_CP013139.1\|WP_007379065.1\|824967_825393_-\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	4.99195e-19
NZ_CP013139.1\|WP_007379035.1\|804331_805093_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|226913	COG4538, COG4538, Uncharacterized conserved protein [Function unknown].	2.33939e-10
NZ_CP013139.1\|WP_007379038.1\|807009_809190_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP013139.1\|WP_007379005.1\|814590_815835_+\|UPF0149-family-protein	gnl\|CDD\|377099	pfam03695, UPF0149, Uncharacterized protein family (UPF0149). The protein in this family are about 190 amino acids long. The function of these proteins is unknown.	0.00122877
NZ_CP013139.1\|WP_083503362.1\|810126_810570_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.34324e-07
NZ_CP013139.1\|WP_007379008.1\|818912_821882_+\|hypothetical-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.61648e-11
NZ_CP013139.1\|WP_007379068.1\|826781_827879_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	4.87154e-61
NZ_CP013139.1\|WP_007379004.1\|813623_814361_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	2.05992e-19
NZ_CP013139.1\|WP_007379070.1\|828688_829822_+\|DUF1570-domain-containing-protein	gnl\|CDD\|284926	pfam07607, DUF1570, Protein of unknown function (DUF1570). A family of hypothetical proteins in Rhodopirellula baltica. This family carries a highly conserved HExxH sequence motif characteristic of members of the Peptidase clan MA.	1.33119e-05
NZ_CP013139.1\|WP_007379034.1\|803506_804250_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.19642e-125

>NZ_CP013139.1|WP_007379005.1|814590_815835_+|UPF0149-family-protein
MSPTKIRNDVVKLSELSTKKPDYYFIQGYLMGLGVLPQMLNPSEWQPDLFGDLNVQNATELKYLESLMALYNQCMEKVIQNELKMPAKCSLSKQDYRDSLKPNMPLPSYCKGVLQALKHINKRMLDAEQKQALNNLNSVLKAFSNEKAAAKEFGEFAQYNAQEYKRNYVYFMADAIFELRFSNDLTLSDEDEAQFNNSFLDEEPNELDELDELLELVLADTELKALEPMQMLLEIMEGGLITKQFIKDNAGHFWGLQETRPYMMLRAHRAKIHALHGYTVKAQSELEELLKLNPNDNQANRFLLMNCLIINKEWEKLEALLADFDFQELHATASRALSAFVMHGDSKPANDYKKMLQQQNKHFTKILTGQEKLKEQQPPYYSPGSKEEVGVYLESLGKQAWISVPASLFWLRKK
>NZ_CP013139.1|WP_007379004.1|813623_814361_-|transporter-substrate-binding-domain-containing-protein
MNKLITLFICLIFNVSPTVFACERTLSVASHDAFWPPYVLGINGELQGAEVDALNIIFAGSPFCFKVELLPNSKRAFVELKHGRIDLGWAASYTDNRAKYVHFSESYRTEVMRLYENKNNQHNVDSLEDIFKQGLTVGANFGSYYGEEFEQYKTTYKKQIEYTSAMSKRFEMLNKQRIDFAIEDELASAYFIKRSSNLAPVKNIKFINKDAIHLMLSKDTVSVEELEVINKHIKNNQTALKALFE
>NZ_CP013139.1|WP_007379003.1|812851_813589_-|transporter-substrate-binding-domain-containing-protein
MKTIIVVFAVLLLSTFNAHACNKTFKVGTNENYWPPYVELKNGVLSGIEINVIKTLFKGSPFCLKFSVLPSSLRAQEELKQGRIDIMFAATKTKKRSKFAYFSQSYRDEVMLLYKNTLSPNLSSIEQLFSQGFSIAVNRGSYYGAQFEQLKKAYPKQVVLISTADKRFEMLNKQRVDFVIEDALSGLFFLKQSLNIEPVTNMAFFNKAPVHLMLSKKTVTLDELSVINQLIQKNKKATERIYQTY
>NZ_CP013139.1|WP_081824564.1|811068_812667_-|ABC-F-family-ATPase
MISTANITMQFGAEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALVPSAGNVSITPGLKVGNLSQDQFAFEEYSVVDAVIMGDVELWKVKQERERIYSLPEMSEDDGMKVAELESVFAEMDGYTAESRAEEILLEAGIDKEFHYGLMANVAPGWKLRVLLAQALFANPDILLLDEPTNNLDIHTITWLANELNKRKCTMIIISHDRHFLNSVCTHMADIDYGELRIYPGNYEKFLEAAGLQREQLLAENAKKSAEIDELQDFVNRFGANASKAKQASSRAKKMDKIKLDEVKSSSRMSPSLSFDEGKKMYRQALEVNKLGHGFDGEKLFTGGDLLLEAGAKLAVIGENGVGKTTFLRCLVNELKSLEGEIKWSENATFGYCPQDSTKDFDNDLTLFDWMSQWRTVNHNDLMVRGMLGRLLFTADDSNKKARNCSGGEKNRLLFGKLMMQDVNVLVMDEPTNHMDMEAIEALNNALKDFEGTLIFVSHDREFVSSLATRIIDIKDKKVIDFQGTFDEYLSSCEEKKA
>NZ_CP013139.1|WP_083503362.1|810126_810570_-|hypothetical-protein
MYSSKKLLTGRYTCENQFYSVTICTKKRTQIFKNFESACIAIRGLVYMQNKVNTICYTLMPDHLHWLFQLKDLPLNDVVRQYKSITTVNINKFNYSNGSIWQQNYFEHQLRTEEDLINQARYIVANPLRAKLVNEVGEYPFWDCVYL
>NZ_CP013139.1|WP_007379038.1|807009_809190_+|catalase/peroxidase-HPI
MSNPKAGQCPVMHGSNTKTSNPNTDWWPNALNLDILHQHDTKTTPYDSDFNYAEAFKTLDLEALKTDLKHLMTQSQQWWPADWGHYGGLMIRMAWHSAGSYRLADGRGGGGTANQRFAPLNSWPDNGNLDKARRLLWPIKKKYGNKLSWADLIILAGNMAYESMGLKTFGFAGGREDIWHPEKDVYWGAEKEWLAPSDGRYANVDKPDTMENPLAAVQMGLIYVNPEGVNGVPDPLKTAAQVRETFARMAMDDEETAALTVGGHTVGKTHGNGKAENLGPEPEAADVHEQGLGWNNTTTRGIGRDTVTSGIEGAWTTHPTKWDNDYCKLLLSYEWELTKSPAGAHQWEPVNIKEEDKPVDVEDPSIRLNPIMTDADMAMKMDPAYRKIIERFYNDFDYFSDVFARAWFKLTHRDLGPKSRYLGADVPSEDLIWQDPVPTVDYTLTNAEISDLKATLLNCGVSAADLISTAWDSARTYRGSDHRGGANGARIRLAPQKDWQGNEPTRLANVLAALEKVQAGLNKQVSIADLIVLGGTAAVEQAAKSAGVDVTVPFAPGRGDATDDMTDAESFDVLDPIHDGFRNWLKKDYVVSAEELLLERSQLMGLSAPEMSVLLGGMRVLGTNHNGSQHGVFTSNVGTLSNDFFVNLTDMVYRWEPTEKGLYNLVERTSGVTKWTATRVDLVFGSNSVLRALAEFYAQDDNKERFVHDFVNAWVKVMNTDRFDIK
>NZ_CP013139.1|WP_033016400.1|805443_806352_-|tetratricopeptide-repeat-protein
MRYYISLLFVCFTFFLATVNAAEQRPEVLTAQEQQHALSQLKEPMYKPLLERYVLDELKAVRQDQQKLREDVTKQVTHAQLDTADRALTYTTDTINNVFFIITATASILVLVGWNSLRDVKNKVEDIVNTRVSVITDEYEDRLKILEEKLRVRSEEILSNQERISVTNEVHSLWMRANLESDFANKIEIFDEILKRKPEDVEAIAYKADALLEINETAQAIELCNQAIDIDSDYGYAYWQRACAFALIHEHADALADIKMALDYSPNLRNELLHESAFASLHDNESFNTIVAGEASGIQLNL
>NZ_CP013139.1|WP_007379036.1|805102_805423_+|hypothetical-protein
MQISDERKIRLMYRVEPGCLGPDGANHIEDFCRFANKHIKSPYYGLFVFLPRYDKQKDERQYSVNSRNLSQVQAKAYLNHFDIDIDNFEEQLDELLAKAIDLYFKR
>NZ_CP013139.1|WP_007379035.1|804331_805093_+|SnoaL-like-domain-containing-protein
MKPLSIILASLITTVALISYASDQQPEVTEPKLKSAEQVVTNKGDSVSKNTNTDNFATEIDANDKINTLEYKAPELKKPVIDTAKTDDSKVFGNEAPQPVEKPKNKVEKAVAVAEAEKAVTQAKEALTTKQQTKAKQSRESLAVVEQLVNAYNARNIEEFIRVYSEDVEFYIFPNELLFKGKEKLIARYGLMFKKLKCIHSSPIKRIVHGDIVIDHELSETCSTDKNVVDKRSELISSYQIKDGKIIRVLFFR
>NZ_CP013139.1|WP_007379034.1|803506_804250_+|ferredoxin--NADP-reductase
MSNWVDATVKKVTWWNETLFSLTVNADVEPFKAGQFTKLSIIEDDKRIARAYSYVNSPDSSALEFYLINVADGLLSPRLAKLQPGDNVLIERRATGFFTLDEIPQSEQLWMLGTGTAIGPFLSILQQSEVWQKYQHINLVHGVRFNSDLSYQPLINELLKAYPAQLNYIPVVSREEPLEGLHGRITDAIQSSRLFDKVKLDPAPNNAQFMICGNPQMVKDTTELLIGKSFKRNRRREPGHITVEQYW
>NZ_CP013139.1|WP_007379009.1|817660_818839_+|DNA-cytosine-methyltransferase
MTKLTAIDLFSGAGGFSLAAHEVGFDILAAVEFDQHAANTYQRNIVERLGANTHVYAEDIMPLNIDALMSEKGLKSGDLDLLLGGPPCQGFSTHRIKGRGEDDPRNQLLLRYFDFVEKLMPKAFLVENVPGLLWPRHALYLNKFLELANEKKYKVITGKPLIINARDYGVPQSRRRAFILAVREDIDIENLEWPPKPTHIKPDFDKPLTKNIWKSASIAFERPAEEVLKNLVPRMSKVLGWEAAKSRKIVESLEFGKPLKESDSCNIHMNHQPFMIERFNDTELMGSRDELEFTLPCHQNGYSGHKDVYGRIYFHTPANTITTGCNNPSKGRFLHPWENHGITLRHAARLQTFPDDYQFLGGVMAAARQIGNAVPIDLGKALINQIKDKLLD
>NZ_CP013139.1|WP_007379008.1|818912_821882_+|hypothetical-protein
MVASVSFQTRARTIDHLGREQIADCPTAISELWKNAYDAYARNVSLNIFDGELPVSSLVDDGHGMSINDARDKWLTVGTESKATGIEVDESERNGFEKVRIKQGQKGIGRLSCAALGSLMLLVSKKKEHQFVACLLDWRLFENPYLMLHDIKLPIVEFETRIELKDLLPTMFDSLMGNIWGDGDDFSRDKRIESAWELFHEQELREEKDSTKEAIESTVIDTYFTERHFDTWPVWNGRAACGTAMFIADLHEDLTAQLSSDSGSEIDGAEQRAKERLIETLNSFVNPFNQDDEEGITDFNTSVVAWNGNLQRLIIDEVRNFNIKQFEQLEHIIDGIVDENGKFVGKVKAFGEWHNEIKVPPKSNYRMRKDTKFGEFKIRLGTFEVNRKNSSLSDELHSNFFEMRKYFGGVMVFRDDLRVMPYGREDNDFFEIEKRRSKNAGAFVFSNRSCFGGVYITKSSNPNLRDKAGREGIIDNKASKLFREVVENILIEVAKRLIGRHSDNRTIKLDEINAYHAAEKAANDRKSLLRKERNRVKSLINKNTPYLSNTQHELNELAAYVESDCQMNDQDELVRLQHELSELDGKIKDYSLSPIPRTLGSIEIEYREYRDVENNLKTLLNSLKQTINNAIDNLVVKEDIEIAEKNFASKAGVLHQKIRKLASSGRNILKEEVQRFDKQIDAANKAFHQKLSIHLDDLAAKRTTLQNVNSIIEIEYQKQDIEITQTLNAYINALESLKEQIDLEGLAIQSVNENSRLQKQNEQLHALAQLGISVEIIGHEIEGQDMTIERGLKTLAESSLNQKQSTALESVTQAHQSLSDSWRFLSPLKLAGEKIRIKMTGNDIYNYVNNFFQKRLEQNQITFEQTDAFKKISIYEQPAKIYPVFINLINNARYWVKESSDSKRQVLLDVKDGQVVIADNGPGVDIDDVTELFTLFFSRKQRGGRGVGLYLCKSNLASGGHKIFYQTNDEQKVLSGANFVIDFKGIKNA
>NZ_CP013139.1|WP_007379007.1|821874_823752_+|hypothetical-protein
MLENNFDYKPFLKEAYIQPIRTVTVIDDEYPTLEHLVTKGKEGFKGDDIERLSDIIKVSRGDQFNWLLDVYDGKEEVFETNNVSRRLHHSDLLILDYHLDGEDDGLCQKSLDIIKHLADNRHFNIVAVHTKGYTGEKGSVNDVLCDIIASLQVKPRAVNLNDNLKTNIESAVDDWSDDSPDIRKELLDSISKIDLLYLIHNSLNSLFSPAFEDEKLQAFTNIFEQKPDEVKLVKPLLLKWLINEKYREFEGIAPNEAVKHFDWGVENDINWIKTEDLFLTVVGKRTTQVNEIPEKLLSAMECWRPHPHKLILSKLRNDVESKGISASSNILNKKHLQAAWLKELLKTSTEYESKTAAWSTVSKLWEELATEIKGDLGDFTIRLLSALNVAEADKKKLLSYFVPTESDTDELEQVKHANCFSCSRKISTHHIITGHILKIGNSYLLCLTPICDLVPDQKNNDLNIVKGQEIKALMPVTLVQMYDANEALKLTRESMRASLNLPKEHFPELSKTEVLQQVINYSTQNNLLFIQPDGPEGDIKILSFTAGLDGKANPKSKNYYIENQGIFQEGEPVNLHIAEPCDKGVVLKVTPQKGIVVAELRYEYALNLLSRLGFAKSRVGLDFIN
>NZ_CP013139.1|WP_007379065.1|824967_825393_-|DUF86-domain-containing-protein
MTDTGITLYLSEVTRHIDEYMQELDELSQIDSLNSRDYRAAERLLQLMTEVCIGLSKHWLKQHKSSTSSNAYQTFSELTNLGFLSEVELLSWRKIIGLRNALVHDYLNIDQSIVKTIIKKQHYITMHAFSIKAITELNKDS
>NZ_CP013139.1|WP_007379066.1|825385_825775_-|nucleotidyltransferase-domain-containing-protein
MANEVIQKIIKYLQQNTDIDVVWLYGSHAKGTAQPHSDIDLAVAFKNFDLEFFDKRLRPKELELEISNALNLNEQLVSIIDINIIPSYLAFNVIEYGKIIISNNSVRAMKEQQRIYSQFEFETIASKHD
>NZ_CP013139.1|WP_007379068.1|826781_827879_+|Fic-family-protein
MWIWQQQNWPNFTWDDAALAPLLRELSYNQGLLVGRMGVQTAHQKQQALDTLLANIIHSSAIEGEKLNAFSVRSSLAKKLNIDEQPYPTTVQSDNLAEIMLDAINNTDSALNLERVLNWHRLLFSGEQSLFTKIEGGQLRGDEPMQVVSGRLDKPILHFTAPPKERVNKELSLFFNWFNKAQNEPQIDPFIRAAIAHLWFVTIHPLEDGNGRITRLITDLALAQEHAESIRFYAMSVAILEDRKSYYEVLEATQRGELCITKWIKWFLRTLNNAIHHTLNNIEQTIFKTNYWASKDQTKLGEQQVKVLNKLLDGQFEQGISASQYQKVAKVSRATATRHLSDLQTLGFIKKTAAGGRSTRYKVVQ
>NZ_CP013139.1|WP_007379069.1|828200_828686_+|hypothetical-protein
MIKWILLILTTVFTTKLYADEAYFQTRCDSIKKERETIRSKLRHGYSIKEGEYLTSRDKFLFTQLANHCSKPKKSGSAYQATSSTSTRTPNSNWLLNQKVSNMSLHSDSYKDAAKLDAWSTFYKLPKRCRKKGIGSADFVWCSEYRGKQKDLFEAQWKEHP
>NZ_CP013139.1|WP_007379070.1|828688_829822_+|DUF1570-domain-containing-protein
MFKTKLRVVFVFFVLLIASALIANHFTGRVFNYSDPIGEVKRIYNYLASQIVTEPLSTKRPEKVSTTTLQHTLVSADNHLSQVNNTRCVDVSLGEVKYKRNGDIFTWTDSEGVPHFSDKKPDFAVATYNPGFVESLDYFDLTLNTPNLPSSFNQELHIKLNTVFKAYGQVIGVHALKKVKLNLTVLATRSAYESAIKHRGGDPKNTAGMYFHGSNSAFIHYDNGQSAMRTSVHEAVHAINKAVLGYTPRWLNEGFAEYFELTKNNMQTGIVEPNRSWTKNNNITKSVFTINWLIGLEDTWRKGDNSKLYASSWAAIYFLMDTQAGRALLKNIMLTEQQSPCSKLSAKKLKKMLYTQLPNLKREYSQWLKMPFRAHNF
>NZ_CP013139.1|WP_007378988.1|830558_832067_-|hypothetical-protein
MITLLTRLTFCFALFYSVNSAAYNEAMCILIKQEIQQNSGDKTSRKYRNAIRDYNNNCNKPKQAQTYPKPPIETAPVITPVQSQVVEPTLNTPQNPATLQMPLPVSIENEQQQNTIEQPNINNEVIINAEPQAKSVIDQQSTQPLKSSVPVKVKTPANITAPVAKPAPVIVPVPIDQSSLLLPSLLFVIVILIAVMVLIRLRRTKQSKAEIIAPVVTETQVLKSQKIAPPLNVSTKDAPTKQTPINAPEIIDENKTIKSNQPQLKANKTQKINTDHNNIDEVLPTTLAQTNEATFTEIKPKSEPNYTEFAAAAKTTEAQVNKANRFTEPQVQELDPHAQPIKKQPKQTTQSSATVHSNPLINNELKPVIASPEPLKPSETTDDLHTPKKVATPEFTNFSSAHNFKEPEIRTFDPNAPLPGEKVMPKAAPRPINAEHETTKSAAEKKETVNKASSNPFANLSLDESWDPNSAEKPTIEEKKRAPKSQALIDAEERAKKMQTKE
>NZ_CP013139.1|WP_007378989.1|832260_833727_-|dGTPase
MTIDFSKKITPARMYRTTSNLQMALESDRGRIINSAAIRRLQQKTQVFPLERNAAVRSRLTHSLEVQQVGRFIVQRIFANLSYQQQKDYGLTGLERPLESLVEMACLMHDIGNPPFGHFGEAAINHWFNNNLLSVTPERCKEPNTGIGVVFKHLALDICNFEGNAQGIRIIHSLQTLNLTYSQSAGILKYTRPAGLDTKDIPQNKNYLMKKVGYYYSEKSFVETLQKELTIEPYCRHPASYIMEAADDISYCLADIEDAVEKDIISTELLCIQLKSHYKKALINLTIDDSEHLDFVDKAVDYALERAKAQPYNFNSEFFIYLRVSLLHPLVSHAAKRFIENIEPIYHGDFNHALLEDRSHLHAVTKALKNVALKYVFSNKEVEKLELQGYRIINGLLDCYKPLLLLNSDDFKRALNGDSRLLIESRLVKKLSKKHLNSYSHAINAMQEEPDHFAAYEFYYRCRLIQDYISGMTDQFAYDEYRSLMVID

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013139_1	1.1\|816382\|38\|NZ_CP013139\|CRISPRCasFinder	816382-816419	38	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	816382-816419	0	1.0
NZ_CP013139_1	1.1\|816382\|38\|NZ_CP013139\|CRISPRCasFinder	816382-816419	38	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	816291-816328	2	0.947

1. spacer 1.1|816382|38|NZ_CP013139|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 0, identity: 1.0

attaaaagcgaagcttttgagtttcgacgtaattaata	CRISPR spacer
attaaaagcgaagcttttgagtttcgacgtaattaata	Protospacer
**************************************

2. spacer 1.1|816382|38|NZ_CP013139|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 2, identity: 0.947

attaaaagcgaagcttttgagtttcgacgtaattaata	CRISPR spacer
gttaaaagcgaagcttttgagtttcgacgtaattaatg	Protospacer
.************************************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11154 : 79343

Leptospira_phage(18.18%)

transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007377509.1\|11154_12123_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.0e-41	34.8
WP_007379045.1\|12551_13418_+	diguanylate cyclase	G3MA91	Bacillus_virus	4.8e-25	38.9
WP_007379044.1\|13439_14339_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007379043.1\|14440_15073_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_007379042.1\|15179_16196_+	kelch motif domain protein	NA	NA	NA	NA
WP_007379041.1\|16192_16909_+	NAD-dependent deacetylase	A0A2I7S9Y2	Vibrio_phage	2.7e-05	23.6
WP_007379040.1\|17063_17861_+	response regulator	NA	NA	NA	NA
WP_007379089.1\|19913_20807_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_007379088.1\|20813_22127_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_007379087.1\|22501_23347_+	hypothetical protein	NA	NA	NA	NA
WP_150115549.1\|23674_24854_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.6e-114	64.5
WP_033023924.1\|25113_26157_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007379091.1\|26351_27539_+	hypothetical protein	NA	NA	NA	NA
WP_150115561.1\|28530_29645_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.8e-44	37.8
WP_007379118.1\|30648_30948_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_033041226.1\|30944_31160_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.0e-13	55.9
WP_007377124.1\|32118_33276_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	8.3e-41	38.2
WP_007377122.1\|33718_34099_+	VOC family protein	NA	NA	NA	NA
WP_007377121.1\|34619_34958_+	hypothetical protein	NA	NA	NA	NA
WP_007377120.1\|35087_35768_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.7e-05	28.4
WP_007377119.1\|36044_36902_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_007377118.1\|37373_38708_-	DUF1552 domain-containing protein	NA	NA	NA	NA
WP_050554129.1\|38724_45336_-	starch-binding protein	NA	NA	NA	NA
WP_004334492.1\|46336_47683_-	N-succinylarginine dihydrolase	NA	NA	NA	NA
WP_007377115.1\|48320_49427_-	hypothetical protein	NA	NA	NA	NA
WP_007377114.1\|49472_49907_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_007377113.1\|50030_50459_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_007377112.1\|50623_50980_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	4.2e-28	55.4
WP_007377111.1\|51012_52023_+	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_007377110.1\|52047_53265_+	organoarsenical effux MFS transporter ArsJ	NA	NA	NA	NA
WP_007377109.1\|53370_55491_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-17	32.6
WP_007377108.1\|55557_56145_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007377107.1\|56256_56799_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_007377106.1\|56861_57395_-	hypothetical protein	NA	NA	NA	NA
WP_007377105.1\|57446_57818_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_007377104.1\|57908_58256_-	hypothetical protein	NA	NA	NA	NA
WP_007377103.1\|58464_60438_-	serine/threonine protein kinase	A0A2H4UVE2	Bodo_saltans_virus	1.8e-19	30.3
WP_007377102.1\|60961_62218_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_007377101.1\|62233_62698_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_007377100.1\|62714_64043_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_007377099.1\|64062_65343_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_007377098.1\|65353_68863_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_007377097.1\|68844_69573_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_007377096.1\|69565_70363_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_007377095.1\|70566_71682_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_007377094.1\|71698_72202_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_007377093.1\|72198_73689_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_007377092.1\|73725_75252_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_007377091.1\|75254_76031_+	hypothetical protein	NA	NA	NA	NA
WP_007377090.1\|76048_76534_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_007377089.1\|76530_78357_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_007377088.1\|78353_79343_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

441645 : 498030

Catovirus(20.0%)

integrase,holin,transposase

attL 429501:429528|attR 491853:491880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
429501:429528	attL	NA	NA	NA	NA
WP_007375504.1\|441645_442614_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.8e-52	38.3
WP_007375503.1\|442919_443753_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.7e-32	31.9
WP_007375502.1\|443749_444841_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_007375501.1\|445180_446224_+	hypothetical protein	NA	NA	NA	NA
WP_007375500.1\|446912_447821_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_007379122.1\|447912_448878_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	6.7e-44	35.0
WP_033023872.1\|449449_449845_-	hypothetical protein	NA	NA	NA	NA
WP_033023871.1\|449848_450133_-	hypothetical protein	NA	NA	NA	NA
WP_007378879.1\|450402_451359_+	DUF1679 domain-containing protein	NA	NA	NA	NA
WP_007378878.1\|451505_452135_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_007378877.1\|452144_453383_+	uracil-xanthine permease	Q9KX94	Enterobacteria_phage	5.4e-54	35.4
WP_007378876.1\|453528_455274_+	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_007378875.1\|455266_456499_+	hypothetical protein	NA	NA	NA	NA
WP_007378874.1\|456538_458317_+	sucrose phosphorylase	NA	NA	NA	NA
WP_007378873.1\|458452_458842_+	hypothetical protein	NA	NA	NA	NA
WP_007378872.1\|458914_459301_+	hypothetical protein	NA	NA	NA	NA
WP_007378871.1\|459364_459499_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_007378870.1\|459498_459765_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_007378869.1\|460004_460274_+	hypothetical protein	NA	NA	NA	NA
WP_007378868.1\|460457_460754_+	hypothetical protein	NA	NA	NA	NA
WP_007378867.1\|460786_461674_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007378866.1\|461790_462963_+	MFS transporter	NA	NA	NA	NA
WP_007378672.1\|463379_464195_+	2,5-didehydrogluconate reductase DkgB	A0A2H4PQR8	Staphylococcus_phage	1.0e-40	38.8
WP_007378673.1\|464274_464562_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_007378674.1\|464864_465020_+	hypothetical protein	NA	NA	NA	NA
WP_007378675.1\|465046_465205_+	hypothetical protein	NA	NA	NA	NA
WP_007378676.1\|465314_465719_+	hypothetical protein	NA	NA	NA	NA
WP_007378677.1\|465857_466622_+	hypothetical protein	NA	NA	NA	NA
WP_007378678.1\|466699_467560_-	hypothetical protein	NA	NA	NA	NA
WP_007378679.1\|467689_468343_-	hypothetical protein	NA	NA	NA	NA
WP_007378680.1\|468514_469432_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_083503364.1\|469602_470262_+	3-oxoacyl-[ACP] synthase	NA	NA	NA	NA
WP_007378682.1\|470296_471037_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_007378683.1\|471033_471291_+	acyl carrier protein	NA	NA	NA	NA
WP_002958648.1\|471312_471558_+	acyl carrier protein	NA	NA	NA	NA
WP_007378684.1\|471562_472129_+	hypothetical protein	NA	NA	NA	NA
WP_007378685.1\|472121_473486_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_007378686.1\|473469_473835_+	thioester dehydrase family protein	NA	NA	NA	NA
WP_007378687.1\|473827_474577_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_007378688.1\|474566_475535_+	acyltransferase	NA	NA	NA	NA
WP_007378689.1\|475527_477072_+	aromatic amino acid lyase	A0A1V0S940	Catovirus	1.2e-58	31.9
WP_007378690.1\|477064_477493_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_007378691.1\|477516_478026_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_007378692.1\|478072_480313_+	hypothetical protein	NA	NA	NA	NA
WP_007378693.1\|480314_481553_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_007378694.1\|481540_482101_+	DUF3261 domain-containing protein	NA	NA	NA	NA
WP_007378695.1\|482097_483267_+	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
WP_007378696.1\|483256_483715_+	hotdog family protein	NA	NA	NA	NA
WP_007378697.1\|483711_484437_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-08	26.7
WP_008137175.1\|484436_485666_+	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
WP_007376375.1\|485756_487061_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.1e-44	31.1
WP_007376374.1\|487177_488785_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_007376373.1\|488979_489303_+	ferredoxin family protein	NA	NA	NA	NA
WP_007376372.1\|489450_491694_+	carbohydrate binding family 9 domain-containing protein	NA	NA	NA	NA
WP_007376371.1\|492320_494246_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.3e-17	33.5
491853:491880	attR	NA	NA	NA	NA
WP_007376370.1\|494275_494977_-	membrane protein	NA	NA	NA	NA
WP_007376369.1\|494986_496204_-\|holin	Choline transporter BetT, short form	NA	NA	NA	NA
WP_007376368.1\|496362_498030_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-47	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013138

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013138_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013138_1

860776-860978

Orphan

Consensus_repeat	Method
TTTAGGTAATTTAAAGCAACTAACTTGTAATCAGTAGTCTGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013138_1

>merge|NZ_CP013138|1|860776-860978|PILER-CR
TTTAGGTAATTTAAAGCAACTAACTTGTAATCAGTAGTCTGTTCAAGTTACCCGTCGACTCGGTTAGTCGGCACCATTTATTTTAGGTAATTTAAAGCAACTAACTTGTAATCAGTAGTCTGTTCAAGTTACCCGTCGACTCGGTTAGTCGGCACCATTTATTTAGGTAACTTAAAGTAACTGACTTGTAATCAGTAGTCTGT

>NZ_CP013138|1|1|860776-860978|PILER-CR
TTTAGGTAATTTAAAGCAACTAACTTGTAATCAGTAGTCTGT	TCAAGTTACCCGTCGACTCGGTTAGTCGGCACCATTTAT
TTTAGGTAATTTAAAGCAACTAACTTGTAATCAGTAGTCTGT	TCAAGTTACCCGTCGACTCGGTTAGTCGGCACCATTTA
TTTAGGTAACTTAAAGTAACTGACTTGTAATCAGTAGTCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013138.1\|WP_007378399.1\|845470_846178_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP013138.1\|WP_007378398.1\|846303_846900_-\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP013138.1\|WP_007378377.1\|875756_876500_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021
NZ_CP013138.1\|WP_007378384.1\|863970_867054_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP013138.1\|WP_007378378.1\|873264_875760_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|236944
NZ_CP013138.1\|WP_007378394.1\|851692_853297_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NZ_CP013138.1\|WP_007378392.1\|854536_855262_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP013138.1\|WP_007378380.1\|870730_871897_+\|protein-visC	unknown	unknown	gnl\|CDD\|236139
NZ_CP013138.1\|WP_007378379.1\|872328_873063_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP013138.1\|WP_033023821.1\|861252_862668_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP013138.1\|WP_007378382.1\|868208_869531_+\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP013138.1\|WP_007378388.1\|856849_859624_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP013138.1\|WP_007378385.1\|862657_863974_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP013138.1\|WP_007378383.1\|867616_868180_+\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP013138.1\|WP_007378397.1\|847015_847936_-\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP013138.1\|WP_007378393.1\|853446_854472_-\|methyltransferase	unknown	unknown	gnl\|CDD\|181902
NZ_CP013138.1\|WP_007378396.1\|848168_850487_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP013138.1\|WP_007378389.1\|856517_856790_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP013138.1\|WP_007378395.1\|850500_851217_-\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
NZ_CP013138.1\|WP_007378381.1\|869546_870734_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584

Protein	Function_ID	Function_description	E-value
NZ_CP013138.1\|WP_007378399.1\|845470_846178_-\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	4.93642e-115
NZ_CP013138.1\|WP_007378398.1\|846303_846900_-\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	4.616e-41
NZ_CP013138.1\|WP_007378377.1\|875756_876500_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	7.24277e-175
NZ_CP013138.1\|WP_007378384.1\|863970_867054_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP013138.1\|WP_007378378.1\|873264_875760_+\|ribonuclease-R	gnl\|CDD\|236944	PRK11642, PRK11642, ribonuclease R.	0
NZ_CP013138.1\|WP_007378394.1\|851692_853297_-\|HAMP-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.23669e-23
NZ_CP013138.1\|WP_007378392.1\|854536_855262_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.21493e-106
NZ_CP013138.1\|WP_007378380.1\|870730_871897_+\|protein-visC	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	2.69674e-154
NZ_CP013138.1\|WP_007378379.1\|872328_873063_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	2.3433e-45
NZ_CP013138.1\|WP_033023821.1\|861252_862668_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.79842e-65
NZ_CP013138.1\|WP_007378382.1\|868208_869531_+\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP013138.1\|WP_007378388.1\|856849_859624_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	3.84085e-88
NZ_CP013138.1\|WP_007378385.1\|862657_863974_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	7.30903e-37
NZ_CP013138.1\|WP_007378383.1\|867616_868180_+\|UPF0149-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	9.1241e-47
NZ_CP013138.1\|WP_007378397.1\|847015_847936_-\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	1.1371e-115
NZ_CP013138.1\|WP_007378393.1\|853446_854472_-\|methyltransferase	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	7.50972e-95
NZ_CP013138.1\|WP_007378396.1\|848168_850487_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP013138.1\|WP_007378389.1\|856517_856790_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.64978e-52
NZ_CP013138.1\|WP_007378395.1\|850500_851217_-\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	2.59705e-151
NZ_CP013138.1\|WP_007378381.1\|869546_870734_+\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	1.32525e-160

>NZ_CP013138.1|WP_007378388.1|856849_859624_-|hybrid-sensor-histidine-kinase/response-regulator
MQSKYSSPVKGLLPLFLIINIVVTSLAIVAYSLYSQNQTHSEKIEPSINIADLATRLDLPLVDALTMYGQGKVRQLLDLTSLLNNDFHYTLYRFNSTSQTELVYSSTKPAIASIKLNEHLIDDGVLHHLLMLNDQPIGELIIKQKQSNLLLTMQNSQVVTYLIAIASVIALFIFALMFNAYINNRLRASTGLLTEELQAIAENGNYDSNVSEQLEIGLNVVAQNINLLLQKVQTAMTNNDTAQKELQKLQNSLETEVHNRTLALEQATLKAERASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTELDGAQHRLSTIIRESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVAKKRELDLELSIAPDIPINLIGDTIRVRQVLYNLCSNAIKFTSTDEKTQGHVKISVEVAHNTADHFTLRFCVTDNGKGMTQAQLREIFNPFIQAENSITREYGGTGLGLSICKSLTELMLGTIHVNSHIGIGSEFTVELPFSTSGKIKYDHKGALNAKHIVVVSNHLERQKVMYRYLSFMGAKITNVYNEQEIEEHQYDPDIIWVVDGIDNMDKINALLRRLLYSLEDNNQQVVVLSKLDEAAINHKNIFYINAAPLCKSNFMLSILVAAGLHQPKQIKKTKTLNNYLNVEQARKANKLILLVEDNLLNQQVLTDQLHILGYGVEVANDGVEGLNMWRKGNYSLILTDLHMPKMSGYDMVEKIRGEAELLEAIDAQPYIVAVTANALKGEKERCLAVGINDFITKPIELNALESTLKRWSDKQNNGKNVVIHQNTALPVDMDAVAKYVNGDKAKQMRFFKMYLEQSQSLIKSINSGVMVSDLNEIIEGCHQLKSISKTIGAQMVADLATSFEDKCKADELTSDELIDLRDKLEIEYSKAAQFLKEQVKIAAQDDELI
>NZ_CP013138.1|WP_007378389.1|856517_856790_+|oxidative-damage-protection-protein
MARTVFCQKLQKEAEGLGFQLYPGEIGEKIFNNISKEAFAQWQHKQTMLINEKHLNMMDPEHRIFLEEQMVGFLFENKDVEIEGYRPPEK
>NZ_CP013138.1|WP_007378392.1|854536_855262_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSESSNTNLEQAKQEGKYIRTIRSFVKREGRLTKGQAAAIEKCWPTMGLEHKNGMLDLSEVFGNNNDVVVEIGFGMGKSLVEMATNAPHLNFIGIEVHRPGVGACLMDADEAGITNLRIFEHDAIEVLADCIPNESLTTLQLFFPDPWHKKRHHKRRIVQAEFVEKLRTQLKMGGVFHMATDWENYAEHMLEVMKVAPGFKNQSETNDYVPRPDLRPLTKFEQRGHRLGHGVWDLMFERTE
>NZ_CP013138.1|WP_007378393.1|853446_854472_-|methyltransferase
MSVLTNPSLLLLRNSEALTGKSILVVNFVQDGFLTELKELNPQSKVTAFSYNHANGEFAKNTKDVDIHVSHTIPGNDYDLVILYYPKSKPELLMALDNIRSAITDDAELLVVGENKSGVKSIEKQLAGKAEFSNKIDSAKHCVLYSFAEITKHPHFDITTYHKKFIVNVADTEFTAISVPGVFNHGSLDAGTKILLENAPTIKQGKVLDFGCGAGLIATYLGLQNSALEFVCSDVSALATYATEQTLKLNGIKGIAILSDGLKNISGKFDLIVSNPPFHTGIATDYTVAETFLANAKLHLTKVGKLNIVANSFLKYPPILESQFADYQTVFKNNKFAVYIS
>NZ_CP013138.1|WP_007378394.1|851692_853297_-|HAMP-domain-containing-protein
MPKKVHQSSIRKALINLIMLITAICLSLSISISTYLSVKEQKQLIISKLVILSEIVAFDAGNSVITNNRKNEERRLKSFDKIPLVKNIHIYSIEKTSQKPVFFISFNAKKTPPVPLRIDSIDELETPRINNEYIELIRPILNDEKLVGYVYMRGSLESLDVYIKQKILIDIFLTLLILIVVYFIAIKVQKRIAKPIEHLNRLLQDVSKNHNYDARAPSTNVKEITALSNSLNIMLARTQKQLTRHEKDKEEIKQLNQNLEEKVNRRTIALREANQDLLTTLERMHQYQTQIVENEKMASLGQMVAGVAHEVNTPIGLGITGSTLLRDKLADIKLSFDDKKLTSNQLKNFIDEGIENLDLIYRNLNRAADLISNFKKVAVIQDDGDNTNLNIHKLISDVLTSMQSELTDKNPVVTINCPTDLAIQSKSEPLQQIFQQLLLNSVIHGFLDAENNEIRFDIELIGKQLTIVYSDNGQGVDNSIKHRIFDPFVTSKRGQGASGLGMHLVYNLVTQSLGGRILFDLEEQQGARFIITIP
>NZ_CP013138.1|WP_007378395.1|850500_851217_-|two-component-system-response-regulator-ArcA
MQTPVILIVEDEDVTRLNLVSLFEAEGYKVIEAIDGDDMHDKLTNNDDVNLVVMDINLPGKNGLILARELRQKRKVGLIFLTGRDNDVDRILGLEIGADDYITKPFNPRELTIRARNLITRTALGGEESALETNGVITFNGWELDENSRCLTSPNGDAKRLPKGEYRALRLMLDSPGRIFSREQLIKHMTGRELRANDRTVDVTIRRIRKHFESDNSTSELISTIHGEGYRFIGKIDS
>NZ_CP013138.1|WP_007378396.1|848168_850487_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MTDYSLSPWVRVLSSLITRFGEFKTAAICYSLLLAASLILSSMFYYVAIGEFHFVDILAVVFFAAVVSPLIISVLLNSIRQLDASYAYLDSATKQEKLLNQTLKDNISRLNIEIDERKMAFHAKHRAIEELRREIAERKKTQQELAQQSMLQRSIVDSSPDLFYYRDNNGVFAGCNKVFEEVMGKSSSELIGKTVEQIFPSDFLSEVLRTDKEVEQNHQPLTIDVGYEVNGETRWFELRKLPFINDEGDYIGLLGFGRDITSRKEAAQALETAYKDKGKFIATLSHELRTPLNGIVGLTRMLLDTDLNKQQRSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIATNSINVSDFINDVVNFAGLIAEQKELKFNIERHGVLDVYAELDPTRLRQVVWNLINNAVKFTQQGEVKLVCRRENRSEGAWLVMKISDTGQGIPQEQLPRIFDMYYKAPDIKGTNAIGSGIGLAVTKALVSAMNGIITVDSTEGKGSCFTVQIPLSLCIAPTEQGYVGRSLHILLVEDVPLNAEIATNLLEQRGHEVLWAETGEDALSFVETEDDLDLILLDMQLPDINGDEVARQIRADSYFDKLPIVALTANVRSAEEELAGISIQGALAKPINTVKLDKMLADLFDIKKIENKAPQLKVSAEALKGIDAHLLDVETIEDFVNSMGVVVFKRSSQLFEKLNPQYQQELLASLNSGDREEYKSVAHKLKGAAGSVGLNDVQLHAKVMEYGAIDETDEVLNEWLDVLADKINEGQQALHLFLQQLE
>NZ_CP013138.1|WP_007378397.1|847015_847936_-|GTP-cyclohydrolase-I-FolE2
MQTNMPDIADTAPALQTGKLDWVGMGEIELPFIFESRDLAPVTVNAKARAFVNLHKEEAKGIHMSRLFLALDMLSTEQQVNPQTIAQALDTFITSHEGLSDKAQIEFKFELPLRRKSLLSGKTGWKSYPITLTSTLENNNIHYELTVDVTYSSTCPCSAALARQLIQNAFSEKFNQETLSQKDVHEWLGTTQGIVATPHSQRSIANVKVKLNSKTDEFDVVNLINILEEELKTPVQAAVKREDEQEFARLNGQNLMFCEDAARKIKALLEHNNYADYWLQINHYESLHAHDAVAIAVKGLTNGYQA
>NZ_CP013138.1|WP_007378398.1|846303_846900_-|DUF2726-domain-containing-protein
MEFALLSILVLVVGASVVVSKFSDDGGNPYPFTRKQSVFTQVESAFLSLLERAVGDQYKIVSRVKLVDVIDCKEGLSPKSKRAAIAKAKNKQLDFVLIDKDKMTIVAAVDLVNNANKDGHKAQRDWFVNGALEAAGIPHIRMKVKSGYRPSEVRDAIMYKIGKPGASQAKRPIRNRVHKPAVLSPSQAKAQTTALAEI
>NZ_CP013138.1|WP_007378399.1|845470_846178_-|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MNVGIIGAMEPEVKILREAMQNPQILTKAGFTFYTGELAGNAVTLVQSGIGKVASTIATTLLIDNFKPDCVINTGSAGGFDPSLSVGDVVISSEVRHHDVDVTAFGYEIGQVPQMPAGFAAHPKLVEAAEQTIAKISDVKTLVGLICTGDTFMCDPVRIDKARSDFPTMLAVEMEGASIAQTCFTLNTPFVVIRSMSDIAGKESPQSFEEYLETASINSSKMVVALLEKLTAVSL
>NZ_CP013138.1|WP_033023821.1|861252_862668_+|TolC-family-protein
MIWQCKPTLLAISVMLLSGCASDLNSSQRMQAPNNMPQQWQQEASSSALKVQEQWLTQLQNPTLNKFVQQALKNNQQLLQTSYDVEIQKQQLIVSGAALWPSLDLSTRTSRSKDNRPVSYDNASSVSLNLTYEVDLWGKLSDAKREANLNYLAQQARFEQAKQQLVADVVTGWFDVVTAQQLLDLFKRREANAQQNLDIIESGYRQGINEALDVYLARNELNNERSRIATQTASLSASARVLERLLGEYPKGAITASSDLPVINTDIPLGLPSELITRKPTLRASWYELLAADASLAYAHKQRFPSLDLTASLSDSTDRVSDLFSPSSLAWSLLGSISAPLFEGGRLKANEEIARLNTQKQEQLYLQTLYDAFGDVENAISQQQSLKAQYTSTLEAQENALAAEQLSFEQYQSGLVTYTTVLDAQDRSFDAQSSLIDIKNQLIANRINLHIALGGDFAKPSSELKSNNDEN
>NZ_CP013138.1|WP_007378385.1|862657_863974_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKTKTAKIIIPAVVIVATILIVMFIKNNTPEAKRFGTPPKASISVAALELKPQNYQVMIDSYGTVKPRTQSLLVAQASGQIIEVSDDFREGGFFEKGDVLLKLDDRDHQAEVKSAQANLLTAEQGLLEEKARGQQAITDWKRLGGSNQASSLVLREPQLAAAEAEVLSAQAALEKAMLDLERTKVTAPYAGRILSRSVDLGQVVTNNTQLATIYAIDSVEIRLPIKNKDLPFVNLPEQYRDGAKNQAGSIVKFTSDLVGEQTWQGQLARTEGAIDEGAQQLYVVAKINDPYKATANNQYPIKIGQYIKAQITGRTVSNALIIPNSTIYQGTYVYIVEGGVLKRKDITLAWQNATQAMIKTGLNANDKLVITPLGQVSSGTQVSILGEQSADQPKSRGANGQGKGKRPTAEQLEQKAKELGISVEELKKRRPAKQGDKP
>NZ_CP013138.1|WP_007378384.1|863970_867054_+|efflux-RND-transporter-permease-subunit
MIAWFAKNHVAANLLLVTLLLSGLFSLSSKIPLEVFPSFETDMISVNVSLRGSTPEDVEQGVTIRIEEAVQDLEGIKQIFSRSSEGSGSVTIEVETGYDPRELLADIKSRVDAINTFPADAEKPIVALAERIREVIAVTVSSDYGEKETREYAETVRDQILRLPNVTQVELSGVRDYEIAIEVSQDVLRQYDLSLAQISSAIANSSSDISAGNLKTEGGDVLISSKGQAYRKDEFANIVVKNQADGTIIRLGDIAIIKDDFEETPVRTRFNGKQAAFIDVYRIGPQSAITVADDVKNYIKEQQSFLPQGFELSYWDDDSELVKSRIATLTTNALQGGILVLALLTLFLRPAIAFWVFIGIPVSFMGAFLAMPIFGVTLNIMSLFGFILVLGIVVDDAIVTGENVYTHLKTATSGEQAAILGTQEVATPVTFGVLTTVAAFLPLAFIEGARGALFAQIPVVVIPVLLFSLIESKFVLPAHLKYIKLRHEKGEPSKFDVIQQRFADGFENAILKYYQPTLNLALRHKLASVSLFVGVFIIILTMITSGWTKFVFFPRIPSETVRVNLTLPTGTPFEVTNKYVIDMSQKAQQLQEKYRDPDTGESVILNILATTGGRGGVSNSGSVRFEITPAEKRESDIGSRELASEWRDLIGVIPGAESLTFRAEIGRSSDPIDVQLSGTSLTILQDVADHIKTRLSTYPTVFDIADSMSDGKEELQIELTQQGLALGLNRVNVAGQVRNSFFGSQVQRIQRGRDDVRVMVRLPIEERRSVADLQNILINTPAGGSVPLSHVATLTAGQSPSTINRIDRYRTLNVTADIEKNNTNMTILQADLTEYLDGLMQQYPGVDYKLEGEAKEQRESFGSLAWALVFVFFIIYALLAIPLKSYLQPIIVMSVIPFGMIGAVVGHWIMGMDLTIMSLLGMLALTGVVVNDSLVLVDFINKKRSEGGKLLDAVKIAGASRFRPVMLTSLTTFIGLMPLLFEKATQAQFLIPMAVSLGFGIIFATFITLLLVPINYMLMERFQGWFK
>NZ_CP013138.1|WP_007378383.1|867616_868180_+|UPF0149-family-protein
MNDLPDYEKAQLLLEKNEIFVSPAEAHGVISGLLACGLTIDDKEYLGLLSDVFNDGESFSNDLKQFFGTIYKQVVASFNDDEFQFDLFLPSDDETLIDQANGLVSWVAGFMLGFGLKQKDYGKLSSDVKEVITDFSEITRLDTTFEETEEDSQALHEVIEYVRVSALLCFAELGKEQNTQSTKKTLH
>NZ_CP013138.1|WP_007378382.1|868208_869531_+|Xaa-Pro-aminopeptidase
MVEVQKSEFKARRERLLAQMDKNSVAIIPAASEVTRSRDTEYAFRQDSDFFYLTGFNEPDAVLVLCNNSDAPSTLFCLDKDKLAEIWHGRRVGFDKAKSDYLFDEAYPLSELNDKLLDILNEKDAIYFAQGAYPSFDTKVFSLLGTLRSGSRKGLKAPSTLKEIRGLIHEMRLFKSPSEIDVMREGCEISARGHMRAMRFSHPGATEFQLEAELHHHYAMNGAPHPAYGTIVGSGDNANILHYTQNSDVLKNGDLVLIDSGCELQGYAADITRTFPVNGQFSEEQAALYNIVLKAQEVAFDEVKPGGFMSHANKRAMEVMTQGLLDLGILTGDFDELMAKGACKEYYMHGLGHWLGLDVHDVGDYKVNNVERAFEPGMVLTIEPGLYISEDSSAPQKYKGIGIRIEDNLLVTETGHENLTLSVPKKISDIEALMQSAKNV
>NZ_CP013138.1|WP_007378381.1|869546_870734_+|2-octaprenyl-6-methoxyphenyl-hydroxylase
MAKQFDVVIIGGGLAGASCALSVAKTNPALNIAVVEANQVTGDYHPSFDDRSIALAQQSVEYLQSLNLFEQNAPYTAAIKKVSVSDRGHFGKAHINCDEFAKPSLGYVVEVNPFGRALHLRLTQSNITLLCPDSVTAIEQTLHSNTLTLQSGEQLNAALLVIADGAQSPTRSLLGLGFNTQPYEQGAIIANVEVAGGHNNHAFERFTQNGPMALLPMSNNRYSLVWCMRQEQVEQHMALNEQDFISALQSAFGYRGGQFTKVGMRTSYPLVYGQVESLIAHRTVVIGNAAHAIHPIAGQGFNLGLRDVQVLSNLITNSQHDLGSYAFTREYSKKRCDDIKIVMSLTDALVRLFSNSSRVLALGRSIGLFSMDLFPALKAPLAKQLMGQVKQGRRL
>NZ_CP013138.1|WP_007378380.1|870730_871897_+|protein-visC
MKQAQVCIVGGGCVGLTLALGLAKADISVVVLDGAPTQALPTDEYGLRVSALSIASQTLLEQLNVWPEIIAQRACAYTHMDVRDADSFGKIAFDNEQLELEHLGHIVENDIIRYALIKELEQQSSATLMFDTQYQQIHQSESDVFITLKSGEPIIAKLLVAADGANSAIRKQFNMALSFKDYGHHALVATVKTKEPHANTARQVFLPTGPLAFLPLSDANTHSIVWSTSPNHCDELLAMDDSSFNKAVMAAIDGQCGLCEVQSKRVAFPLKMRYAQQWVSGKVVLIGDAAHTIHPLAGLGMNLGLKDAAYLIELLTSDSKEFASTRTLRDYERTRKLDAQKHIAMMQGLKELFEGANPFKKLIRGVGLSLVDNLGPIKHLFAKEAIGK
>NZ_CP013138.1|WP_007378379.1|872328_873063_+|enoyl-CoA-hydratase/isomerase-family-protein
MANLIELTTKNNTAILTMNTAENRHNPAFLAEFNLHLDHIEADQNIKSVILTSSSDKNWSLGIDLQWMSNPSILPAAISDFMVQIGDLFKRIVTFPMPIIAVLNGHTYGNGAVLACACDFRFMKSDKGFFCFPEVDVMVPFVPSMFPIINKAISQTFFNRLAMSGERVGAEQLLENKVVEAVFANNDELQAGALEFAQQFNKNRWIYAQNKTQMNKQILLTMKEEDPSFIDNISKLLWKNLQKK
>NZ_CP013138.1|WP_007378378.1|873264_875760_+|ribonuclease-R
MSNQDPNLSREQEKYENPVPSREFILTHLQERSKPANYAQLCEELAVNDDERQIAFKRRLRAMERDGQLYFNKFKCYALIDEAGLTKGKVIGHRDGFGFLEVEGESKDWFIAKHQMNMVLHGDIVLAKGTKRGSGSKCDARIIKVLTNERAPIVGRYFVEHGVAVVVAEDPRITQDIMILPGNENGARHNQMVQVKITQNPSRNMNAVGKVIDVLGEHLAPGMEIEVALRNHDIPHVWPEEVEAQVAHLGEFVEEADKQGRVDLRDLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAIADVSHYVGMNTPLNKEAILRGNSVYFPEQVIPMLPKVLSNGLCSLNPKVDRLCMVAEMTVSSAGKLSGYKFYEAVMNSHARLTYTKVNAILQNDEKLREEYSAVVPHLTDLQQMYMALKAARQDRGAIEFETLETRFVFNAQRKIESIVPVIRNDAHKLIEECMILANVSAAKILEKHEASALYRVHDEPDQEKLGNFTKFLGELGIESTLSDEPTPKEITQVLARLGDRPEAELIQTMLLRSMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVIKAQGQQTSGEYAYTDDEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFNGVISSVTNFGLFIRLDDLQIDGLIHVTNLGDEFFAHDAAKHTLIGEHSHTVYRLGDKVTVKVASVSLDDRRINLTLKGDVAQDRYSRRRAPKKGSGKSEHAPASVRSQLKAGKVPGKKSHSDDKPKGKKKPANKDKGKPANKSATKPADKKAADTAVKKKPKKKAVKKPKRAGKNARKRTSPGADNT
>NZ_CP013138.1|WP_007378377.1|875756_876500_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSNELIFGFHSVEAILESEPERFVEIYALKGRDDKRSTPIIDEARKFGISVQFMQRKALDSKSKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAGVHAIIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDNHVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLRQRNANN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013138_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013138_2

1827294-1827448

Orphan

Consensus_repeat	Method
TTTCCTTCAGATGTACTTTTATTTATTTTACTTAAACGTTGGTACGACTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013138_2

>merge|NZ_CP013138|2|1827294-1827448|CRISPRCasFinder
TTTCCTTCAGATGTACTTTTATTTATTTTACTTAAACGTTGGTACGACTGAATGGATTCGAACTACTGACCTTTGGACCGGGTGATCAAGAGTAGGTAGTGCTTTTTCCTTCAGATGTACTTTTATTTATTTTACTTAAATGTTGGTACGACTGA

>NZ_CP013138|2|1|1827294-1827448|CRISPRCasFinder
TTTCCTTCAGATGTACTTTTATTTATTTTACTTAAACGTTGGTACGACTGA	ATGGATTCGAACTACTGACCTTTGGACCGGGTGATCAAGAGTAGGTAGTGCTT
TTTCCTTCAGATGTACTTTTATTTATTTTACTTAAATGTTGGTACGACTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013138.1\|WP_007375656.1\|1831180_1832053_-\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|367711
NZ_CP013138.1\|WP_007378516.1\|1821957_1823226_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013138.1\|WP_007375661.1\|1835819_1837067_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238634
NZ_CP013138.1\|WP_007378513.1\|1826179_1826947_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226480
NZ_CP013138.1\|WP_007378518.1\|1817934_1818672_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP013138.1\|WP_007378520.1\|1816413_1817034_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP013138.1\|WP_007375660.1\|1834424_1835807_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238634
NZ_CP013138.1\|WP_033023829.1\|1817131_1817866_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP013138.1\|WP_007378515.1\|1823469_1824672_+\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185686
NZ_CP013138.1\|WP_007378521.1\|1815415_1816423_+\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
NZ_CP013138.1\|WP_007375658.1\|1832928_1833288_-\|DUF3718-domain-containing-protein	unknown	unknown	gnl\|CDD\|378871
NZ_CP013138.1\|WP_007375652.1\|1827719_1828772_-\|DUF3080-family-protein	unknown	unknown	gnl\|CDD\|378622
NZ_CP013138.1\|WP_033023827.1\|1824752_1825706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007375659.1\|1833538_1834324_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007378522.1\|1814233_1815397_+\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NZ_CP013138.1\|WP_007375655.1\|1830861_1831065_-\|CPXCG-motif-containing-cysteine-rich-protein	unknown	unknown	gnl\|CDD\|379524
NZ_CP013138.1\|WP_007378517.1\|1818822_1821654_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP013138.1\|WP_007375653.1\|1828749_1830105_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP013138.1\|WP_033015721.1\|1830233_1830860_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP013138.1\|WP_007375657.1\|1832177_1832870_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013138.1\|WP_007375656.1\|1831180_1832053_-\|fructosamine-kinase-family-protein	gnl\|CDD\|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	8.18068e-115
NZ_CP013138.1\|WP_007378516.1\|1821957_1823226_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.05868e-21
NZ_CP013138.1\|WP_007378513.1\|1826179_1826947_+\|hypothetical-protein	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	1.84631e-18
NZ_CP013138.1\|WP_007378518.1\|1817934_1818672_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.60051e-57
NZ_CP013138.1\|WP_007375652.1\|1827719_1828772_-\|DUF3080-family-protein	gnl\|CDD\|378622	pfam11279, DUF3080, Protein of unknown function (DUF3080). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.	1.23518e-77
NZ_CP013138.1\|WP_007375660.1\|1834424_1835807_+\|amidohydrolase	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	5.6083e-138
NZ_CP013138.1\|WP_033023829.1\|1817131_1817866_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.64958e-58
NZ_CP013138.1\|WP_007378515.1\|1823469_1824672_+\|family-16-glycosylhydrolase	gnl\|CDD\|185686	cd02177, GH16_kappa_carrageenase, Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.	5.04525e-146
NZ_CP013138.1\|WP_007378521.1\|1815415_1816423_+\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	7.71783e-98
NZ_CP013138.1\|WP_007375658.1\|1832928_1833288_-\|DUF3718-domain-containing-protein	gnl\|CDD\|378871	pfam12514, DUF3718, Protein of unknown function (DUF3718). This domain family is found in bacteria and viruses, and is approximately 70 amino acids in length. There is a single completely conserved residue C that may be functionally important.	1.09903e-07
NZ_CP013138.1\|WP_007378520.1\|1816413_1817034_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	5.92419e-88
NZ_CP013138.1\|WP_007375661.1\|1835819_1837067_+\|amidohydrolase-family-protein	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	1.18795e-60
NZ_CP013138.1\|WP_007378522.1\|1814233_1815397_+\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	3.28556e-130
NZ_CP013138.1\|WP_007375655.1\|1830861_1831065_-\|CPXCG-motif-containing-cysteine-rich-protein	gnl\|CDD\|379524	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are 5 conserved cysteines which occur in a CPXCG motif and a DCXXCCXP motif.	6.02496e-21
NZ_CP013138.1\|WP_007378517.1\|1818822_1821654_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP013138.1\|WP_007375653.1\|1828749_1830105_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	5.76983e-157
NZ_CP013138.1\|WP_033015721.1\|1830233_1830860_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	5.84311e-100

>NZ_CP013138.1|WP_007378513.1|1826179_1826947_+|hypothetical-protein
MTNSSKFTSIAKYLLNKRGHNNEVSDFPENLTISSMNDVINVQKLMIKLNNNTVYGWKCMLPLDNGAYILAPLLHMPIKSIEHCELITKNDKALMEPEIAFVLNKNLDIFKEYKNEEVDNAIGSAHLALELIQNRFTDDYSATHFEKLADGLSNQGVYLGPKVDIKKVYESSNIHITVKQGDRESNHIGKHPAHLPQEPLYWAINFLAANGFELKTDQIFITGSYNGVMELDINEVTSIKYEGLGEFKVEFVSNN
>NZ_CP013138.1|WP_033023827.1|1824752_1825706_+|hypothetical-protein
MTNTNLRRLGLTFMCLIIACVCIHLANSPNDKPIEDGNIKFYKVDVPPRFTKKILNSNSASKSIVKKPQYIIMLNKALLIGAQQQRIEKISDILKMWIKKAPYSCLSWLNQQRATKERTLYISKVMRILISENLSIASDIILSTQEFYSNLNIVNEYLNAQAKVNPYYAIDWLNALDNSNIKKEAELSLLKVWAKHDPIQLLEYLEINTQIKANDRKLIQHELALQLTSQNPQKLQDEFYTYPSLLQPDLAYSIISQWPEGELNKALEWIHMLEGEEAKFYAIQSYIDYTGSSIVGLTPLIEQIHNPTLRARLFDKL
>NZ_CP013138.1|WP_007378515.1|1823469_1824672_+|family-16-glycosylhydrolase
MNLTNTVILPVSALGMLLISSASQADMQPPIAKPGETWILQVKRSDEFDVKDATKWNFQTENYGVWSWKNENATVSDGKLKLTTKRETHQRNFWDGCNQKQLTNYPLYYTSGVAKSRATGNYGYYEARIKGASTFPGVSPAFWMYSTIDRSLTEEGDVQYSEIDVVELTQKRSVRESDHDLHNIVVKNGKPTWMRPGTFPDTNHSGYHLPFDPRNDFHTYGVNVTKDDITWYVDGVVVGQKKNLYWHRQMNLTLSQGLRAPHTEWKCNQFYPSANNSEQGFPTSMEVDYVRSWVKVGNNTNPDGGDSQGGNSCPDTWVGVNSVSISSPTQALRKGQSATIESTVLPACATNKNVIYSTSNKNVATVNNAGVVKAKNKGSATITVKTKNKGKIDTLAVSVI
>NZ_CP013138.1|WP_007378516.1|1821957_1823226_+|helix-turn-helix-transcriptional-regulator
MRCIIPLLVANIFFMALVYFSLVRKRFGTAYNYYVIFFITFIFYLCGPLLNALPIEHTKPYLQLGRTILFFWFGLPSLLVALFRQSDILLPHAVQYFSYAFGFVFSLSYLVLTDLTHPKINVLLDFGVVIGPFTWLVINHVYYLQVVAIMMLLILPCGYLLLHGKNLKNHGYIYSALCLGVVAVLGSVYQHWVFYYAGTSVCGLIWAAAIFKDIYITNNALRLNTAPASLFKPEKNHTLDKNKFINSSLLLKNKLKKANLIVCFGVVKSQLNKRYLASVFKYVNKYFSQVTYIFLSDKHLVKHNTNTKGVSVNEDVVRAAQRYIDKNYSKNINIDIIACAIGVSRSYLIKQFRQATSNTINNQIIDIRIEKAKVMLLEKSVTETAFEVGFNNSNYFATVFKKRTNFTPRQFKDIFTGKTTTK
>NZ_CP013138.1|WP_007378517.1|1818822_1821654_-|TonB-dependent-receptor
MYHKKKIVLAILATLSSCSFAQAATQSEGKGDTEIIVVTGVRSSLEAASSLKRYSDSVQDSIVAEDIGKFPDQNVAESLQRIPGVSINRVNGEGSKITVRGFGPEFNVVTLNGRTLATSEIGRSFDFQVLAAELISGADVVKSPTAKTPEGSIGAYVNVKTARPLDNPGLHVLGSINAKYSELSGETSPEYSALFSNTFADETFGFNIALSQQKSDNRYDSMGTTRWLLLNNEPGVIEGDIHNLDGNVVTPSMLRHAGRIEYALGQEHRERIGINTSFQWAPDSSFTNTFDYMYTDLSVETQTQGLQAGLQYPNWRNVVVSDKGTILSGTKFSGRTLGGTGDNVDFRIDGLFQELESKSKTQAFGFNSVKEFDVLTLEFDISHSTSKSTPRNDLLVPNYISPERNDSLDFDFRNTDTVNLDTTIDYASPTSVRAHWNQVSHYELQDTITELQTKGKYLLDLEFTKSLTLDSIDFGIAYSDREKIRDRFETFHEDNCGLVAPDADICGELRDMPDDIFSASPYSDFLSSEPGNFPRDFLFADINKYHSAIRDMTKNPNWPNEQYNEIASSSVKEEKISAYSQLNLSGLISDYDWRGNVGVRYVKTDTSSSGYGKRRLGYTGELDNGQPLLVVDYTDPGSLKAKNSYTNWLPSVNFSINLSDNLLVRAAAAKVMSRPAIDDIGVQTTYTDMQAGSFSQTGGNPYLAPYKADQYDLSFEYYSDSGDAYAVNFFKKDISSTIAQITYLDNTPDIWDGSQYIDSSVSIDGYGNVNETINTKQNQSGGSISGVELAVQHNMDYLPSFLNGLGVQANYTWADTTNKNTQKIELPGVTDPGDKLEGFAENSYNIVAYYDKNAFQARLAYNWRDDFLSSRAGIRSGGLPEHTAAYGQLDFSMSYVVNDNFTLTGEAINITDERTYQYADVKERVINTQYTGPRYRIGLRAKF
>NZ_CP013138.1|WP_007378518.1|1817934_1818672_-|FadR-family-transcriptional-regulator
MSELIYYDLKQTSGMAASLSVQVAKEIGRRIVSGSFEAGSLIDDEDALAKRYQVSRVVVRDAVKILVSKGLLDVRRGIGTRVLPRDRWNMLDDDVLAWHLSAPPNRKFLEQLMDVRLAFEPKAARWAAERARPEDLIEIAAACDRMAETDNSAEDFIIADSLFHKAIIKAAQNSFLASMEGVIYSALLVSIKVTNKDPRDNGASIPFHREVYEAIAAKDADKAELLTEKLLKDASFRLSATVNSK
>NZ_CP013138.1|WP_033023829.1|1817131_1817866_-|FadR-family-transcriptional-regulator
MSELTYYDLRRSSAMSPSLPVQVAKELGRRIVAGTYTPGSLIDDENRLAERFQVSRVVVRDAVKILVGKGLLDVRRGIGTRVKTRDNWALLDDDVLAWHLSAPLNPEFLTQLMEFRLAFEPKAASVAAQRAKPEDIKAIENALNEMQSSVSDLDKFVIADAHFHGAILRASHNELFISMECVIFSALLVSIKVTNQSAQSNHASIPFHREVFDAIATGNSEKAQALTEKLLADAKANLAKLMDI
>NZ_CP013138.1|WP_007378520.1|1816413_1817034_+|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MSLISLTHAMKQLPLVAILRGITPIEVLDYAEVLIDIGYRVIEVPLNSPDAFKSIKLLSDKYADIAIIGAGTVVTKDEVNQVIKAGGRIIISPHSDVELIRFSKLKGLYSVPGFYTPTEGFAALHAGADALKFFPADTAGPKGLKAITTVLSNIDIYPVGGVSPQNQDEFVDAGASGFGLGSGLYKVGMGLEEFTANAKKYAAYYL
>NZ_CP013138.1|WP_007378521.1|1815415_1816423_+|2-dehydro-3-deoxygalactonokinase
MSNNKSNLPALIIVDWGSSNFRAFLVDNKGMILDTVNGEQGVLSIKNGCLETVLLSYISDWLLEYKMPIIMAGMVGGAIGWQDTGYVNTPANLDSMSVSLCKANNKADLRISIVPGIKYVMENNVCDVMRGEEVQVFGAVLDVEQTAGELSNQTLGETMFCLPGTHSKWVEVAKDTQNKTVITSLTTFMTGEMFDLLTKQSILGEGLESLVSTQTDMPSFLKGVGVSQVQSSLLSALFSARTLKLDKQLALQNVPSYISGLLIGAELAGIRSKLNDIKHVYLIGNSSLNTLYCEALKELGFTSSILSSATASTKGMFTLAINAGLVTEKESQLCH
>NZ_CP013138.1|WP_007378522.1|1814233_1815397_+|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MKITQIISHVLQYDLDEELGYSQQYYAKRTAHLVEVRTDIGITGWGECFGGGGVAFANKTIVEHVIQPMILGMDPLDREVIWHKVYNLLRDHGQKGMPIQSLSGVDIALWDIAGKFLDQPVYKLLGGAFRDRIPAYGYGMMLQKFPNLEERFTEESQRIKEMGFTAMKMKIGLSPDRDIKLVEAVRKGIGRDMRLMVDANHAYTAREAIPLGRELQNLGVYWFEEPVAPEDHQGYRDLCEALDMSIAGGEAEFTRWGFRDLIKNRCVDLLQPEVCALGGITEYQKVLAMAHAHFVPVINHVWGSAIAVGTNLHLLAALPDLPGAAHPVQPMLEYDTTPNLFREQLLQESLNINEQVKNNNGTVALPQGPGLGIEPDLDFIKHYEVSI
>NZ_CP013138.1|WP_007375652.1|1827719_1828772_-|DUF3080-family-protein
MNHSLPSKLIIKRSLPVVILLLVSVFTLTSCSKAPSSINNTYITRLSDTLNTSPITPVVLEQLKLTRPSVLSESKITLSIVEFAGLTRCRLNVLISEHNNQLGKTATAASQLKYQINFIQSADNCLNTLDDNTAIYSKISDAKKQKQAHLMHYFNTMLFKEPELNRTWLLTSNELSMQPAGYSDTVEALTQLVTIKKQIKSQQFSQVNTDSLFNALEQLNKYRFNQALIQSARQQIALNNSATQFVKTISFGDLCPTGKNKKEAKIISNVFQKYYLKQIQPYQAQLTGYLEVLQPLYNRLWFEENITVKQINYLIDENSPNNLLNQLKGSAVDHVVWWQKFYKTCEISPI
>NZ_CP013138.1|WP_007375653.1|1828749_1830105_-|MATE-family-efflux-transporter
MTFCNWEAKRLLSLALPVFLAQVTLVLMSVVDTIMAGQVSPTDLAALSIATGIWNPLLLALQGILLALTGIIAQCAGANDKKGISHYFQQALYLTVLLSAIGFGITYLADIIILRLDTSPAIASLAFDYIHFVKWGVFGFLIFTTYRNMTEGMGMTKPAFYISLLGLAVNIPVNYIFINGLFGLPAYGGAGCGIATAIVLTVMAIAQVTYCQLSKKVDAKGLLTPFEKPNLATIVTITKLGIPISLATFFEVTLFACIPLFIAHLGAVAVSGHQIAASVTTLLFMMPLSLSIAISIRIGNLYGQNHLKQLRVAVSTSYILAIVIALFLALITFTGRDLISQLYTDSPEVIALATSIMILACVYQLPDALQVAANGVLRGLKYTAPISYITFISYWLIGFSLGYVLARTDIIVPAMGPHGFWVGIIVGLTVAAVLLMLTVNKRFKREPFITE
>NZ_CP013138.1|WP_033015721.1|1830233_1830860_+|riboflavin-synthase
MFTGIVQTQATVVSKTQTAGVLRLVISVSDEYVKHLDLGASIAINGCCLTVVQVELSNHDVVAQVHFDVIDETLKLTNLGLLELGSLVNYERSVTFGTELGGHIVSGHIHCTSQISQIVKLENNCKIQLSLPKEWKKYVLYKGFVAINGASLTVGEIDEQGFWLHLIPETLAITNIGAAQVGDKLNIEVDQQTYTIVNTVENYLRHQV
>NZ_CP013138.1|WP_007375655.1|1830861_1831065_-|CPXCG-motif-containing-cysteine-rich-protein
MKDFLSQRIACPHCGHHIHLDLDASMGDQDYIEDCAACCNPIHLNMHIDYANNKLELHVDSDDEQIF
>NZ_CP013138.1|WP_007375656.1|1831180_1832053_-|fructosamine-kinase-family-protein
MWKTVNEHISQAIHYDFKHTHKRQLQSSSSDKLFHLSNGTQNYLVKVALKNELERFESEAIGLELLAQNSVFMVPDCIVTGANIEFSFIVLEWLVLDKQPHDTWSAMGKNLAKMHTIHEQAMFGFDVDNYLATTIQPNRWHKKWDVFYAEERIGWQLQLLAEKGINFVEPERLINTIKEQLHSHQVKPSLLHGDFWRGNMGFINMLPTVFNPACYYGDREVDIAMSELFAPLPENFYTAYNQQYPLSQNYQKRKLIYQLYPILNHANIFAGHYLTEAKQHIEMLTATNVK
>NZ_CP013138.1|WP_007375657.1|1832177_1832870_+|hypothetical-protein
MNKSLITNSLAGLCVVVGFVFNQAIVLSVGLFALSGAVTNLLAIHMLFEKVPFLYGSGVIALKFESFKVAIRNLILTEFFSEQKINNLLNKAQPNIDFEPIISNVDLNPAFDNLLEVIEQSQFGSMLGMFGGTAAIEPMREKFIEKMQLSLGEISQTDDFKALVTQTLSQGNSAESLYKTVLKLVDERLDELTPKMVKEIIQTMIREHLGWLVVWGGVFGGLFGLIAVII
>NZ_CP013138.1|WP_007375658.1|1832928_1833288_-|DUF3718-domain-containing-protein
MNILKATLYTGLVLSAALITTPTLAAKFVAADTSPGTQACMAVASNKAYKLRATLRDLRTSKAAINKLQCNNLPITEFVSLYNLDKSANYLNIEATTRTSIKDLAKVNMPTVTIITSPK
>NZ_CP013138.1|WP_007375659.1|1833538_1834324_+|hypothetical-protein
MSKTLASYYQQAYACDQQHFNQCFYCGCEATERDHCPPLHMLQSIVDLGEEADFISIPACYECHALLHNERLMTIDERFTKLKKKLSNKYAKPLRVYNMWEESELGDISDEFAHSIQAGMKLGKEAAERLAFTGFSYATEDAKVAVREKTKEFDVEGMIFTDFKEALNYCINDLNVQKSDFYKILVEDYQGDFNKALSQYRHRHDKVTAAKDGNTLIKDFSKLHKQNSDFVTRTVKHFISKDPSLTTEGALEKLYNNYIKK
>NZ_CP013138.1|WP_007375660.1|1834424_1835807_+|amidohydrolase
MQKFAPSLLAVGLAAALVGCQENGPQDDKITINKNPYPSTYQPVSTSSTLITNATVLTGTGERLDETDVLLVDGKVQQVGKDLTATADITIDAQGKWVTPGIIDVHSHLGAYPSPSVESHQDGNEMTSPNTAEVWVEHSVWPQDPGFNRAREGGITSLQILPGSANLFGGRGVTLKNVPAHTMQGMKFPGAPYGLKMACGENPKRVYGRKGVLPSTRMGNMAGYRMAWAEAAEYKRAWDKYDADYAAGLNPEAPVRDIKHDTLRGVLEGEVMIHNHCYKAEEMAMMIDLSKEFGYHAGTFHHGVEAYKIADLLAQNGSCAALWPDWWGFKMEAYDMVQENVAIVDAVKNSCAVVHSDSDTTIQRLNQEAGKVMYRANENGFDISEQHAIKWITSNAAKSLGIDDKTGSLEAGKQGDVVIWNQSPFSVYAKAEQVFVDGAKVYDRNDSAYQAVSDFMLGQQ
>NZ_CP013138.1|WP_007375661.1|1835819_1837067_+|amidohydrolase-family-protein
MKNLSRSFSLSLVAAGLLASGAVSAQSLAIINATLHTSSDQGVLEAASIVMTDGKITAINPTEVKADKVIDAKGQIVTPGFIASINQLGLVEVSAVAGSRDAGEDKAGIDFDVSLAYNAHSSLVPYARKGGVTRDVITPHGGDSIFSGLASVVDLSGSFDSDIQKQAALIVYLGERSKGSRAFTLQTLINKLDEHKTKAGKKAKKDDDKPSTEDKVMAKVLTGEMPLVVGVSRAADIIELIKVKEQFGINLVLNGAQDAVVVKERVAKANIPVIISAMDSLPGSFDSLHASLDNASVLEKAGVKVLLTVGGDASHNIYQLRFDAGNAVSYGMSQEGALKAVTSNVADVFGINAGSLEVGKAADVVMWSNDPFELSSHVSKMFINGVEVSTQSRQDKLRDRYTTDSKMPRAYTNPQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013138_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013138_3

2371454-2371556

Orphan

Consensus_repeat	Method
TTACTTCGCGCTCATGTAATTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013138_3

>merge|NZ_CP013138|3|2371454-2371556|CRISPRCasFinder
TTACTTCGCGCTCATGTAATTTAAAGCCATTAAACGCGACGTGTAATCCTGATCTACAGCATATACCCGTAGGTGCGAATTTACTTCGCGCTCATGTAACTTA

>NZ_CP013138|3|2|2371454-2371556|CRISPRCasFinder
TTACTTCGCGCTCATGTAATTTA	AAGCCATTAAACGCGACGTGTAATCCTGATCTACAGCATATACCCGTAGGTGCGAAT
TTACTTCGCGCTCATGTAACTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013138.1\|WP_007375438.1\|2369743_2370565_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP013138.1\|WP_007375441.1\|2371590_2371860_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP013138.1\|WP_007375448.1\|2376404_2377742_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182754
NZ_CP013138.1\|WP_007375432.1\|2362040_2362661_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
NZ_CP013138.1\|WP_007375443.1\|2372693_2373335_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013138.1\|WP_007375437.1\|2368562_2369747_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP013138.1\|WP_007375447.1\|2375736_2376411_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013138.1\|WP_007375445.1\|2375027_2375321_+\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183103
NZ_CP013138.1\|WP_008138322.1\|2379304_2380342_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|183405
NZ_CP013138.1\|WP_007375439.1\|2370629_2371208_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP013138.1\|WP_007375433.1\|2362657_2363512_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP013138.1\|WP_007375431.1\|2361197_2362034_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP013138.1\|WP_007375434.1\|2363976_2365545_+\|anthranilate-synthase-component-1	unknown	unknown	gnl\|CDD\|237428
NZ_CP013138.1\|WP_007375436.1\|2367190_2368555_+\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	unknown	unknown	gnl\|CDD\|236509
NZ_CP013138.1\|WP_007375444.1\|2373404_2374829_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP013138.1\|WP_007375446.1\|2375469_2375733_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP013138.1\|WP_002961580.1\|2366160_2367198_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP013138.1\|WP_007375449.1\|2377728_2378139_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007375442.1\|2372051_2372627_+\|septation-protein-IspZ	unknown	unknown	gnl\|CDD\|234704
NZ_CP013138.1\|WP_007375435.1\|2365546_2366149_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552

Protein	Function_ID	Function_description	E-value
NZ_CP013138.1\|WP_007375438.1\|2369743_2370565_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	6.99121e-116
NZ_CP013138.1\|WP_007375441.1\|2371590_2371860_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	2.17236e-35
NZ_CP013138.1\|WP_007375448.1\|2376404_2377742_+\|GHKL-domain-containing-protein	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	2.52864e-58
NZ_CP013138.1\|WP_007375432.1\|2362040_2362661_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	1.90047e-116
NZ_CP013138.1\|WP_007375443.1\|2372693_2373335_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.12894e-08
NZ_CP013138.1\|WP_007375437.1\|2368562_2369747_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP013138.1\|WP_007375447.1\|2375736_2376411_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.58705e-78
NZ_CP013138.1\|WP_007375445.1\|2375027_2375321_+\|YciI-family-protein	gnl\|CDD\|183103	PRK11370, PRK11370, YciI family protein.	2.91284e-56
NZ_CP013138.1\|WP_008138322.1\|2379304_2380342_-\|AI-2E-family-transporter	gnl\|CDD\|183405	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.	4.80382e-97
NZ_CP013138.1\|WP_007375439.1\|2370629_2371208_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	2.23999e-77
NZ_CP013138.1\|WP_007375433.1\|2362657_2363512_-\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.3917e-78
NZ_CP013138.1\|WP_007375431.1\|2361197_2362034_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	4.28981e-54
NZ_CP013138.1\|WP_007375434.1\|2363976_2365545_+\|anthranilate-synthase-component-1	gnl\|CDD\|237428	PRK13564, PRK13564, anthranilate synthase component 1.	0
NZ_CP013138.1\|WP_007375436.1\|2367190_2368555_+\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	gnl\|CDD\|236509	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF.	0
NZ_CP013138.1\|WP_007375444.1\|2373404_2374829_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	2.1979e-144
NZ_CP013138.1\|WP_007375446.1\|2375469_2375733_+\|PepSY-domain-containing-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	0.00149543
NZ_CP013138.1\|WP_002961580.1\|2366160_2367198_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	1.6551e-176
NZ_CP013138.1\|WP_007375442.1\|2372051_2372627_+\|septation-protein-IspZ	gnl\|CDD\|234704	PRK00259, PRK00259, intracellular septation protein A; Reviewed.	2.45961e-64
NZ_CP013138.1\|WP_007375435.1\|2365546_2366149_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	6.62752e-84

>NZ_CP013138.1|WP_007375439.1|2370629_2371208_-|type-1-glutamine-amidotransferase
MSTLQTSTRLQGKKIAILATDGFEQSELLSPRSALLDVGANIEIVSIKEGQITGWNEDKWGDKVTVDKLVTNADPADYDALMLPGGLFNPDSLRQDKDAKAFIDGFFGAEKNKPVAAICHAPWLLAEINKLRDRTITSFPSIKSDLINAGANWVDQEVCVDKGLVTSRSPADLEAFNAKFIEEILEGKHQAH
>NZ_CP013138.1|WP_007375438.1|2369743_2370565_+|tryptophan-synthase-subunit-alpha
MSQVKTDRYGKMFAALNEQKQGAFVPFVTIGDPGKEQSVAIIKSLIDGGADALELGIPFSDPIADGPVIQKANIRALDVHINTQDCFDVIKEIREYNADIPIGLLLYSNLVFKRGIEAFYKDAKAVGVDSILVADVPLHESKIFRKSAMDNGVDPIFIATPNADDDTLRQCASYGRGYTYLLSRAGVTGTDAKAQMPAGNIVTKLKEYHAAPALLGFGISTPDDVKAALNAGAAGAISGSAVVKIIEANLNDLDAMTTQLKAFVSEMKAATAL
>NZ_CP013138.1|WP_007375437.1|2368562_2369747_+|tryptophan-synthase-subunit-beta
MQNPAYFGEFGGMFVPELLVPALKQLENEFNKAQKDPEFQAELSKLLNEYAGRPTPLTLTRNLVKNPKVKLYLKREDLLHGGAHKTNQVLGQALLTKRMGKKQVIAETGAGQHGVATALACALLGLKCRIYMGAKDVERQQPNVFRMKLMGAEVIPVTAGSGTLKDAVNEALRDWSANYQDAHYLLGTAAGPHPFPTIVREYQKVIGEEAKQQVLKAEGRLPDAVIACVGGGSNAIGMFTDFIDEPGVKLIGVEPAGKGLDTNEHGATICKGTKGILHGTYTYIMQNDDGQIEESYSVSAGLDYPAVGPQHAFLHETGRAQYVGITDTEALDAFQSLAKNEGIIPALESSHALAYALKYAEEQTEESVIVINLSGRGDKDLAHVHNVLTERGQL
>NZ_CP013138.1|WP_007375436.1|2367190_2368555_+|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF
MANVLDKIVADKKLELIERKAARPLESFKHLAVPTSRSFYKALAAPGTQFILECKKASPSKGLIREPFDLTEITSVYKKYATCMSVLTDAKYFQGSFDYLEFVRSQVEQPLICKDFFIDEYQVYMARIYGGDAILLMLSVLDDESYKALHAVADSLNMSVLTEVSNEEEVHRALALNAQIIGINNRDLRDLSTDLATTEKLRKLIPADKVVISESGIYTHQDVKRLAPLCDGFLIGSSLMGERDLEQACRRVILGDNKVCGLTRSQDAQTAYQNGAVYGGLIFHPKSPRYVDLDCAKELSQSAPLNFVGVFVDAPIEQVAQYASVLKLAAVQLHGQESDDYIAQLRTQLPTGCEIWKAQAIKDALPTPVNGVDRHLYDTHSDTQAGGTGKAFDWSVLHDATTPFMLAGGLNPDNIKDALFKGALGLDLNSGVEESAGKKCPNKLHNAFTSIRNY
>NZ_CP013138.1|WP_002961580.1|2366160_2367198_+|anthranilate-phosphoribosyltransferase
MSTQPEQPINVQHAIEQLITGQSLSYADAKALFDEIMQGNMSEIELTALLISLKIKGEVSDEIAGAAASMRENAVAFTTSSTQLADSCGTGGDGSNTINISTTAAIVAAAAGINMVKHGNRSVSSNSGSADLLKALGINIDMSPEQAAKCLEQTNFTFLFAPHYHSGVRHAMGVRTALKTRTIFNILGPLANPAAPDVQLLGVYNEALCMPMAQTLKTLGTKRAMIVHGSGTDEIALHGPTTVVELNNGELTQYTLNPSDFDLANYSLEQLAGEGPQYNANASLAILQGKGTDAHNAAIVVNVAALLYLTGKAETLKEGAKQVQTLLSSGQAMNTLNAIIEVSNG
>NZ_CP013138.1|WP_007375435.1|2365546_2366149_+|aminodeoxychorismate/anthranilate-synthase-component-II
MSKANPIKIYFLDNFDSFTYNLVDELTMLGCELVVYRNNISAEVIFNKMRQEQGQVLLVLSPGPGTPSDAGCLMELIELSKGHFPMLGICLGQQALTQSYGGVIGHAGETVHGKSSIINLGEHPVFDGMGNTMPVARYHSLMAKKVPDNIKVIAQYEDIPMAIYHHDDNTLGYQFHPESILTPNGAMLLQQSVAYLTRAK
>NZ_CP013138.1|WP_007375434.1|2363976_2365545_+|anthranilate-synthase-component-1
MIFSHITTTPGEVTSITQVRDYISSPLALYAALDKPNSLLLESAEIDSKDSVKSLILVDCALRIVCQGKTVTINAQSNNGQQLLSYLQANVKSCDATLDGETLTLCYLDTSGDTDEASKLVADNAFSALRTCINSIKSTTNNPFSVFLGGVFAYDMVANFEQLSDVPDGENTCPDYVFYLAETLVVIDHQKQTTELIGNVFNGPDVHANCFEVGKELERLNTLCDNAAEFSADMQSGECEVSVDIDDDTYCEQVVKLKKNIVDGDIFQVVPSRTFSLPCPDSLHAYSQLKKQNPSPYMFYMRDEDFALFGASPESALKYDVSNQQVEVYPIAGTRARGKFTNGQINPDLDSRIELELRNDQKERAEHLMLVDLARNDVARISVAGTRFAKELLKVDRYSQVMHLVSRVVGTLKPELDALHAYQACMNMGTLVGAPKVRAAELVRQTEGKRRGSYGGAVGYLTGDGAMDSCIVIRSAFVKNNIAYVQAGAGVVFDSDPISEANETRAKAQAVITAIKSTYKAV
>NZ_CP013138.1|WP_007375433.1|2362657_2363512_-|PHP-domain-containing-protein
MIKYDLHSHTTHSDGRLTVEELLHRAVDKNIDVFAITDHDTVAAIKPAQQFIKAENLPLSLITGTEVSTKWESFEIHIVGLNIDINNIDLTSLLSAQQQKREERALEIGARLAKNGFDGIYEQAKELAKDAQITRAHFARALIERGVAKNFPGVFKKYLGRGKTGYVPSCWCTMQTAIEAIHAAGGVAVLAHPSSYQMSNKWLRKLLVEFKSVGGDAMEVAQPQQAPSERQFLGELSREYELLCSQGSDFHFPTSYLELGKNLYLPKDCQGVWQVWEGQEGALT
>NZ_CP013138.1|WP_007375432.1|2362040_2362661_-|threonylcarbamoyl-AMP-synthase
MSQLFHIHPDNPQPRLISQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKNDNFTLVCRDLSELSTYARVDNQLFRLIKNNTPGPYTFIFKGTKEVPKRLLNDKKKTIGMRVIEHPIACALLAELGEPLMSCSLILPGQQFTESDPDEILERLDKHVDLIIHGGYLPEQATTVIDLSEDEVQILRVGCGDTSPFE
>NZ_CP013138.1|WP_007375431.1|2361197_2362034_-|segregation/condensation-protein-A
MSENTADTKSSEKPVQQKLPLAFLHGKAVVDKPEDLYIPPGALEIILETFEGPLDLLLYLIKKHKLDVLDLSIFSITEQYVSYVEMMTEFQLELAGEYLVMAALLAQIKSRLLLPVHEELEEEEDPRAELIKRLQEYELFKKAAENLDDIPRVGRDIFIAHAAMPINEDTSQNLPDIELKDLMLALSDVMARAKTFEHHQITAEVLSTRERMSQILQQLSKANSAVVFNALFTPDEGRSGVVVSFIAMLELIKEGLVTCLQVSPESLIYVSLSEQSTL
>NZ_CP013138.1|WP_007375441.1|2371590_2371860_-|HU-family-DNA-binding-protein
MNKAELVAAIAHKSELTKKDSQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPARTGRNPQTGAAIEIEGANKAVFKPAKALKDLL
>NZ_CP013138.1|WP_007375442.1|2372051_2372627_+|septation-protein-IspZ
MHALIEYIPLILFFAVFKLVDIYWATGLLMATTLIQVAYSYFKHGNVPTRQWIFFGIAAVFGTLTLVLHDEQYIKWKATLIYAGLSLTLLVSRYVLNKNLVKKALSSILENANDTKQAIVVPEPLWDKLNLMWVAITAGIAALNIYIAYNFSLDFWVNFKVFGLMGITFVSIFATIIALYKYFPDEEEPAK
>NZ_CP013138.1|WP_007375443.1|2372693_2373335_+|CPBP-family-intramembrane-metalloprotease
MNANQYRWFEFTLIFVLLPLLGFGLREHLANWLIPALIILMSVCCMLLLGDPHFKRFRLTSLGQFSAVKKRVFSFFFLGALFSGMFYGIIHQGNWFTLPRNSFNDWLLLLVLYPILSVIPQELIFRTYFFHRYKRIMPKKAVRIVVSASVFALAHIVYANWIAVALAFLGGLLFAYTYAKSRSTFVCVIEHSLWGLWMFTLGIGSYLDSGAFN
>NZ_CP013138.1|WP_007375444.1|2373404_2374829_-|sodium-dependent-transporter
MSDNRERFSSRLGFILAAAGSAVGIGNLVGFPVSATKNGGGAFLLIYALFVVFICLPVMMAEMAMGRNAQKDPLGSYKLLANNDKKWKFAGFLAVLTPFMIAVFYMVITVWIFGYLMQTGLGNLDLLAEPSHFGVFINSYTVFGYMAVVVIIVNLILLGGVKQGIEKAAKFLMPALLVMLLALVIYVLTLDNAMAGVKYYIIPDFSKMSASVLNGALSQAFFSLSLGMGILMTYASYISKKDDIVSSAKMVAITDSLVAFVAGLMVLPAIFSFDPNTDPSALSDSSVSMIFVYLPKILLALQNDIGYVGASIVAFSFFLLVFFAAITSLVSIVEVPTATLSDRKGISRKKALGILTLTTGVLTILCTMSFGMIDSLTSFTSYGGVNKSFFDIIVDVFYDTILPLNGLMVCLFVMYRWKKARLTQELSLGSPNYAGSLMEKYVNFSLSTFIPIILAVIFINTVATKFFALKIFGF
>NZ_CP013138.1|WP_007375445.1|2375027_2375321_+|YciI-family-protein
MIHSTDVENSLELRKAARPAHLERLNELDSQNRLFTAGPFPAVDSEDPQEAGFTGSLVVAEFDSIEAAREWAAADPYVAAGVYENTVVKPFKKVFPA
>NZ_CP013138.1|WP_007375446.1|2375469_2375733_+|PepSY-domain-containing-protein
MRILLSLTFIACTSFASFSQVNTTATNPTAKAEVSKKKAVILAKKTINGKTLKISEQTDFYTVRILKSDGHVVDLHINKKTGEVKKD
>NZ_CP013138.1|WP_007375447.1|2375736_2376411_+|response-regulator-transcription-factor
MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGIELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQDFDLDSNVIEVFVLRLRKKLDPEGVLNPVETLRGRGYRLKSQW
>NZ_CP013138.1|WP_007375448.1|2376404_2377742_+|GHKL-domain-containing-protein
MVIPQISLKIRQGFILVFVLLVALPILFYSIGKAYYASLVDATEKTLEAQLYSLISEVDFTEHGIIMPSTILAPELNRLNSDTYAMIYRDDEPIWHSESAVNVNFVPQQVETKAGAADFRRVEYKNTAYWQLSLTVILNNIDQSEQARFILVKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAVGFIWSARPLQRLDKEIKAIESGDIQEIKGLYPIELQTIKSDLNLLLDSQQRQKERYRASLSDLAHALKTPLAVLKSSPLANDADAQEQLDRINVMIEHQLKRAATGASDTWKKQTPIKPVLDSILSAMAKVYRDKDIIFSCTVTDKDYFLGDQTDLMELLGNLIDNACKACRSQVEIQVAQSKTLCIGISDDGPGVPEDKRESLLTRGTRLDTYESGHGVGMAIVSDLVKSYHGTLTITKADNLGGAQFILEFNYNDKK
>NZ_CP013138.1|WP_007375449.1|2377728_2378139_+|hypothetical-protein
MIKSNNLLRLTAIVLLVISQYSFADEACTLVKKATTDEAKRYIQCLDTQINKAKLVQGSWIQKRKYELTTSQESTGNTQILPLFMRSISNNEKYIESACQWRYLLKLPNATTAAISYKICEIQLINQFTDALKKPF
>NZ_CP013138.1|WP_008138322.1|2379304_2380342_-|AI-2E-family-transporter
MANLTGVNKSLIVFAALVVVLAGIKSASVIIIPFILAAFIAIICNPFIKFFARYRIPKGIAVMLVVLIIVGLGVSLGGLVGQSINDFSQQLPEYKTQLKEEFVWLVDLASQYNILINKEQLINMFDPGKMVDVATDMLTGLGGVMANMFLIILTVVFMLFEGPMLSNKIHMALDDPDSKMKQIDRFLESINSYLAIKTLVSLATGIIAAFYLWILDIDYFVLWGVLAFMFNYIPNIGSIIAAVPAVLLALITQGPLVAGLVAAGYLTINTVMGNIVEPKFLGKGLGLSTLVVFLSLIFWGWLLGTVGMLLSVPLTMIVKIGLEASAEGKWVATLLGSGEDAAKNN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013138_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013138_4

2658106-2658206

Orphan

Consensus_repeat	Method
TTAGTGAAGCGCCGCAAACCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013138_4

>merge|NZ_CP013138|4|2658106-2658206|CRISPRCasFinder
TTAGTGAAGCGCCGCAAACCGAAACTCCTGTTGATGATAAAAAAGCAGCTAAAGCACTAGAGAATGCAGAGCCAGCCATTAGTGAAGCGCCGCAAACCGAA

>NZ_CP013138|4|3|2658106-2658206|CRISPRCasFinder
TTAGTGAAGCGCCGCAAACCGAA	ACTCCTGTTGATGATAAAAAAGCAGCTAAAGCACTAGAGAATGCAGAGCCAGCCA
TTAGTGAAGCGCCGCAAACCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013138.1\|WP_007378933.1\|2644567_2645590_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007379032.1\|2659623_2660265_+\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP013138.1\|WP_007379031.1\|2660261_2660960_+\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_CP013138.1\|WP_007378930.1\|2647313_2649308_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP013138.1\|WP_033023879.1\|2666540_2667020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007379029.1\|2661828_2662521_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379603
NZ_CP013138.1\|WP_033023880.1\|2670514_2670808_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP013138.1\|WP_007379030.1\|2661006_2661639_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP013138.1\|WP_007379033.1\|2658568_2659627_+\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_CP013138.1\|WP_007379058.1\|2652248_2654189_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP013138.1\|WP_007378932.1\|2645691_2646372_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225258
NZ_CP013138.1\|WP_008134172.1\|2654804_2655386_+\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_CP013138.1\|WP_007379028.1\|2662517_2663105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007378929.1\|2649304_2650684_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240554
NZ_CP013138.1\|WP_007378934.1\|2644320_2644563_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132023
NZ_CP013138.1\|WP_007378931.1\|2646372_2647311_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|287624
NZ_CP013138.1\|WP_007378948.1\|2667019_2668135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007378935.1\|2643401_2643851_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP013138.1\|WP_007379057.1\|2655387_2655942_+\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_CP013138.1\|WP_007378949.1\|2668698_2669760_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316740

Protein	Function_ID	Function_description	E-value
NZ_CP013138.1\|WP_007379032.1\|2659623_2660265_+\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	4.44854e-89
NZ_CP013138.1\|WP_007379031.1\|2660261_2660960_+\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	1.69755e-130
NZ_CP013138.1\|WP_007378930.1\|2647313_2649308_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP013138.1\|WP_007379029.1\|2661828_2662521_+\|hypothetical-protein	gnl\|CDD\|379603	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH. AHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif, AHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. Like WHH and LHH, the AHH nuclease contains 4 conserved histidines of which, the first one is predicted to bind a metal-ion and the other three ones are involved in activation of a water molecule for hydrolysis.	2.36216e-06
NZ_CP013138.1\|WP_033023880.1\|2670514_2670808_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	7.56971e-21
NZ_CP013138.1\|WP_007379030.1\|2661006_2661639_+\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	3.4845e-127
NZ_CP013138.1\|WP_007379033.1\|2658568_2659627_+\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_CP013138.1\|WP_007379058.1\|2652248_2654189_+\|GGDEF-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	1.35847e-46
NZ_CP013138.1\|WP_007378932.1\|2645691_2646372_-\|hypothetical-protein	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	4.26971e-34
NZ_CP013138.1\|WP_008134172.1\|2654804_2655386_+\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	3.95843e-116
NZ_CP013138.1\|WP_007378949.1\|2668698_2669760_+\|hypothetical-protein	gnl\|CDD\|316740	pfam14247, DUF4344, Putative metallopeptidase. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 247 and 291 amino acids in length. There is a conserved EED sequence motif. This is a putative metallopeptidase.	0.000972086
NZ_CP013138.1\|WP_007378929.1\|2649304_2650684_-\|MATE-family-efflux-transporter	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	8.24261e-156
NZ_CP013138.1\|WP_007378934.1\|2644320_2644563_+\|hypothetical-protein	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	0.000412329
NZ_CP013138.1\|WP_007378931.1\|2646372_2647311_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|287624	pfam10672, Methyltrans_SAM, S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases.	2.53519e-93
NZ_CP013138.1\|WP_007378935.1\|2643401_2643851_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	1.73603e-21
NZ_CP013138.1\|WP_007379057.1\|2655387_2655942_+\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	3.81169e-125

>NZ_CP013138.1|WP_007379057.1|2655387_2655942_+|electron-transport-complex-subunit-RsxB
MTLFYALIALGSLALVFGLILGFAAIRFRVESNPIVEQIDTILPQTQCGQCGYPGCRPYAEAIANGDEINKCPPGGEATMKKLAGLMGVDEKPLAGGEQAEPIKTVAYIREDECIGCTKCIQACPVDAILGATRQMHTVLIDECTGCDLCVEPCPVDCIDMLPVAETKQNWKWQLDAIPVTQID
>NZ_CP013138.1|WP_008134172.1|2654804_2655386_+|electron-transport-complex-subunit-RsxA
MTEYVLLLIGTVLVNNFVLVQFLGLCPFMGVSGKLDTAIGMSLATTFVLTLASVTSYLVNQYILIPLDIEFLRTMSFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNIKEDHSFLQSAVYGFGAAVGFSLVLVLFAALRERLAAADVPTPFKGASIAMITAGLMSMAFMGFTGLVKF
>NZ_CP013138.1|WP_007379058.1|2652248_2654189_+|GGDEF-domain-containing-protein
MAGFKKLIFIQIISWLLCVAAGSYFISVSFDNAVSEAQKNAQASVTNYINDLSFDDNLVQNLKKSLADGKTFSSFTLRDYQGAEVFNVNSLIDLPLFADFIQSIFNSARPQFAVNKAADIKVEFTVNIQHLAEQLQISLFIIIFISAVLVIIPIILMQSIFNHLNKSISMTVSDVIDVYINQNQAGELETVLDSSKLKSLGKDLVPSFNRLSHFLKTKNEYIQSEALNIKHEAYKDVITALGNRNMFVEYYEKNIENSEQSTFGSLAMIRCSELQAINQSRGYQKGDEYVKGVADIIKHISGTYAGSQLFRLNSSDFAVVLPHIPLKEAERFGENLQSRFTQYQQNQELSSVANTGIVGYEKGKPLGELLSVVDNAMSMAQSKQINAWHVQRESDLVNNVSAGFGNQNWRKVINEVIESKRVHLVMQNIMPLGKSIKAYAEIQVRFKTEDNQVLPTASFLAMAEKLGMAVDIDKLIIDSSLEKVKSRNLSEKYFGLNVTASSAHNDQFVIWLERRLLKDTHIASKLIFEVSEFGLQQNIKASKRFIDMVHRVGARVTVERFGVGLTSFKFFRDLKPDFIKMDASYTRGLEDDKNNQYFMRLMVDLAHRIGVNVFAEGVESQEEKHIIETLCLDGVQGYYIEKPKDI
>NZ_CP013138.1|WP_007378929.1|2649304_2650684_-|MATE-family-efflux-transporter
MRAISKTQTRPDLLNDPILPTLKTMTIPMIFGMITLMMFNIVDTFFISLLGTEPLAAVSFTFPVTFTVISLAIGLGIGTSAVIAKALGSNKIDEARFDASVSILVAFVLVLILSFIGYLLIDPIFTLLGAGEQVLPLIHEYMNVWFIGSVFLITPMIGNSVLRASGDTKTPSIVMGGAGLINAVLDPMLIFGFGPIPALGIQGAAIASVIAWGVAVVIILYLLIVKKRLLSLKAGSQTVVGAIRKILKIGLPAAGANMLTPVAMAVMTAMVAHHGPEAVAAFGVGSRIESIASILVLALSMTLPPFVSQNFGAGKLCRVKDAYIGTLKFVMIWQFAIYILLIVFSGFISQMFGKEQMVIDVIKLFIYTIPFSYGLQGVIILSNSSFNALHKPMNALFLSTIRLFVFYLPFAYIGNELAGLIGLFIGAALGNLFTAMVAYKWFMKELDALSSQSLRECNS
>NZ_CP013138.1|WP_007378930.1|2647313_2649308_-|excinuclease-ABC-subunit-UvrB
MSDHFQLKSHFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMAHNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRLSATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRNDVDFSRGTYRVRGEVVDIFPAESDTYAVRVEMFDDEIERLSIFDPLTGAIEKHIVRTTIYPKTHYVTPREKILGAIDKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMRELGYCSGIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEYGFRMPSAMDNRPLRFEEFEAIAPQTIYVSATPGDFELERCVGEIAEQVIRPTGLLDPLIEVRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHGVKVRYLHSDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSLIQTIGRAARHLDGRAILYGDRITKSMAKAMDETARRREIQHAYNVEHGIEPHALAKKILDVMDVGEEAGPKDNLKLIRKESKKVLSAKEIAVQIKQLETKMHAYASDLEFEKAGSVRDEIHELQQQLIN
>NZ_CP013138.1|WP_007378931.1|2646372_2647311_-|methyltransferase-domain-containing-protein
MTANFTPLITALEDAPILKNELCRVFHGRGHSVEALSHINLDFYPPSLFLVSYDEIDEQTLSELTDVVWQWAQKNQPELISSLVYQQRAGVQSQNTVVYGQLPNPHVVTENGIRFLVDLQSRQNTGIFPDMRSGREFVMANSKHGKVLNLFSYTCGFSLAAMQGGADHVMNMDMSKGVLKVGKQNHQLNGFERGVSFLPHDILKSFGKLKKAAPFDLIIVDPPSFQKGSFILTKDYQKVLRRLPELLCDTTQLLLCANSPELSEEAFKALINEHTQGAIEFVERLAPTERFIEVDSNKSLKALVYKMSQIPA
>NZ_CP013138.1|WP_007378932.1|2645691_2646372_-|hypothetical-protein
MKLSKRLTAIDTLISQHHDIIWDCCCDHGYLGMALLKRAAASQVIFVDIVATLMNDLETQLSSINKLQKTCDKNPQWQVLCQDVGKIEIAQRKSQVVVIAGVGGELLLSLVQQIIANNAVEHLNNVRFILCPVHHTYKLRVGLKQLGLGLVSEQIVYDNKRFYEVIEVSFSTNNEISHTGNKMWDFASTEHAMYQRQLINHYNKMLNKDKPYYQKVITDYQELTDS
>NZ_CP013138.1|WP_007378933.1|2644567_2645590_-|hypothetical-protein
MSDNKSHINHLLSNEQKWQHSYEQPISYAPLVQLANSNWVVPQHFLRYKHTLQSVNEVLESIEFSAHFRVLAAQKGEEIYLQVAVLSPDNYQKSASTNEAKAKKLLFGRRWIVEENLPTSELIQTAFLALKVAREHEVRELFQLMQSGATSTPFNNHHDLPVMAQNPELVKSEAVTSNVDEVLKRIVFAGKSIELKSQQQVAEQYLYTVELLCEDCQLSEFNKKTIAFLTADPSVNSFLHGLIAALVATSNDYVNEQFKYKGFARFSKHVAVEQIGNLSIAMRSPSTVGLCSMGKQHANQLNFEIDSGRAPQGCGQAIGGFLAAHGIEQPENAHLYPNYL
>NZ_CP013138.1|WP_007378934.1|2644320_2644563_+|hypothetical-protein
MSGTTMIVLIVLISVGSGVVYDMYKKHLEFKHKMQNNNNDAHKQLAETNAQVLALKERVQTLEAIVTDSSFNVKDEINKL
>NZ_CP013138.1|WP_007378935.1|2643401_2643851_-|isoprenylcysteine-carboxylmethyltransferase-family-protein
MLNNKIPPVIVVLFFAGIMALIAHYSVIDFTAFITYLAASLVIIGCVFCIAGVASFKIANTTVNPNKPEQASKLITSGIYKISRNPMYVGFAFILAGWGVWLSSLWALLCIIGFIAYLTFFQIIPEERALTKLFGEEFTAYKARVKRWL
>NZ_CP013138.1|WP_007379033.1|2658568_2659627_+|electron-transport-complex-subunit-RsxD
MKLTMASSPHNHSHKSLTRLMLTVIAACIPGLIAQVVFFGTGVLIQLVLALTAVTVFEAAIMLMRKRPVWPALSDGSAWLTAVLLALSIPPLAPWWIIIIGCLFSIIIVKQLYGGLGFNLFNPAMAAYVLLLVSFPVQMTSWLPVSELSNNVIGFTEQLRIIFTDFTSIGYSLDQVRAGIDGITMATPLDTIKTDIGHGLTVTESMQKTLFNEWAGLGWMWVNLGFLAGGLYLLKEKIINWHIPVSFIASLAICSAIGYIAAPGTEPGTIFHLLSGATMMGAFFIATDPVSAATTNKGRLIYGALIGLLVYLIRTFGGYPDAVAFAVLLLNIAVPLIDYYTQPRTYGHGAVK
>NZ_CP013138.1|WP_007379032.1|2659623_2660265_+|electron-transport-complex-subunit-RsxG
MIISSMAKNGAILTAFALVTTGLVASINALTADKIAEQEQLHLTSQLQEVLDPSTYDNALSTDCVIISDERLGPYANQIIYRARKNNKPVALVVRHVTPSGYSGDINLLTAVLSDGTIAGVRSTKHEETPGLGDKVEVKKSSWITTFKSLTVQGEDDARWAVKKDGGQFDQFTGATITPRAVVGSVKNAVLFAQSEFDAIFAAPNAKCAEVTK
>NZ_CP013138.1|WP_007379031.1|2660261_2660960_+|electron-transport-complex-subunit-E
MSELKTLYKEGVWVNNPALVQLLGLCPLLAVTSTITNALGLGLATLLVLVGSNISVSIVRNWVPKDIRIPVFVMIIAGFVTIVQLLMNAYTFGLYQSLGIFIPLIVTNCAIIGRAEAYASKNPIHLSAFDGLMMGLGFMIVLVVLGAMRELIGQGTLFDSADLLLGPWAQSLRIEVFSFDNQFLLAILPPGAFLGLGLLIAAKNVIDAQIKSKQVAPAEPEKGPRARVTSLT
>NZ_CP013138.1|WP_007379030.1|2661006_2661639_+|endonuclease-III
MNKEKRHQILSRLRDDNPHPVTELEYSSPFELLVAVTLSAQATDVGVNKATRKLFPVANTPQAILDIGHDTLRDYIKTIGLFNSKAANVYKMCQILVDEHNSIVPENREALEALPGVGRKTANVVLNTAFGWPVIAVDTHIFRVSNRTKLAMGKDVVAVEQKLEKVVPAEFKVDVHHWLILHGRYTCVARKPKCGSCIIEDLCEFKDKTE
>NZ_CP013138.1|WP_007379029.1|2661828_2662521_+|hypothetical-protein
MIQLQRYPMPDRPSNPSPLEMAIYNYELLAKKHYDDKRRKSPASKEKLQRDYDHLQKERKRLEHLLIAQQSLESYRAESEGTSIKELAEEEHHPTEKLAKFLRAAGEPKPTSYHEAHHIVCGKGRYRQRLTYATRLRMHSFGIGINDPTNGVWLRNFEKNKSDDWATPDTVSHRRLHRHNYEVWVSTSLRTKVNKLDFVNALRGVKIKIKNHMVPASVMMRKDANWDGKS
>NZ_CP013138.1|WP_007379028.1|2662517_2663105_+|hypothetical-protein
MKLFSLKPVTNSYDMVEWDILSFSEKIQLMLPPNQDACMFLLDIHMNNDSLLEYWPQSYELSFLPGYLKDNYDISIMDGFIALRMNAYEALKDLLAPLGEFIETKADGEPIVIFNLRTFGQEDEAKCEREYLDGYPLDYIKIAFINDDVKNKPVFKSKFTGGSRLFCTDKFKSAVEDNGLTGVYIDEDLDNIFSN
>NZ_CP013138.1|WP_033023879.1|2666540_2667020_-|hypothetical-protein
MNPQVIRDLKYSPHFVAEILYSFIEGARRVDERGAKFELIYLVVPFVMDDVLRRKLNSSNASSTFQTAFLKDDEIKERLFFINDKVQHSKSVTNYGVIYLSSIRETRIDSFILNGNNLEKALIKNHYKKEFIKASYNLGIIFAKEGYVNVLLKSRVTSI
>NZ_CP013138.1|WP_007378948.1|2667019_2668135_-|hypothetical-protein
MTEGFANNATLKYLGYVYQVLIAIEKCFDAKPNETIWIECFGDVYDGKTFTEVKHHVEEHNLASNSKDFWNTLKNLVVEDSSMFEQIVLHTTSFISESSIFHGWNTRSADEKLNIIKSHVPSPSIKSLYNKIFEGTSDAELLRILSRFTIDQSREHVEDKWNSLLEARKLKCVLEPYRDSIFHWIYSYVNKNAIEDHRHWKVNINDFDDAFQFQVNRWSGDSIPFPVDRTDYDTEQHADGYLFLLEYKDIGLKGRDRGVALNDYFKAKNSEESLVDLKPDIMPEIIDNYLVDAVEKAKGFKRQYSYEIDCEDLGTSKSNKAAREAYLEFHNSSVLEVPEVSGTKPYFMRGKVHEAINNTAYTWKYNKEDID
>NZ_CP013138.1|WP_007378949.1|2668698_2669760_+|hypothetical-protein
MTNLEIYEQATNVLTMITADLNDSIYQNMNGKLTLLFGTDEVVNAWARDDSIDVNRPQHTIGINYKLVEVLYRDIESFCNFYSQHLTDKRIDALLPNYTNEPLLFEYFSIEQNCFNMFVGALTFVFFHELGHLLQRHSCLRERFGNNITSTINECNIDRENKLVGKQAAISHITELYADSYGISSCLSEIVRHFKDDKKELKVALYQFVCGLSCTFYIFSDGKSHQVTHEPVGSHPNALIRLEFALPKIYELMDLVDEVVKHEMTREDLVHICGRASFYSLIFQDAKRKVGLRNDQAEQIKGLINRKEDKPYLNSIFSAWEEISEPLRIGALDTSLLHEFSISDAFRDYLHAT
>NZ_CP013138.1|WP_033023880.1|2670514_2670808_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNKFALSAKAKSDLIKIAKYTQLTWGQAQRNSYLKILDNSFQLLANDPKIGINCDCIREGYSKYPHANHVIYYKGHKENQILIVRILHKSMDVNRAL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013138_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013138_5

3533679-3533777

Orphan

Consensus_repeat	Method
AAATTAACAACGTTGTCTTTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013138_5

>merge|NZ_CP013138|5|3533679-3533777|CRISPRCasFinder
AAATTAACAACGTTGTCTTTTTATCGTGTGAATATATTTTCTGCACTCAAATTTTATGGTTACGCTTGGGTACATAAAATAAACAACGTTGTCTTTTTA

>NZ_CP013138|5|4|3533679-3533777|CRISPRCasFinder
AAATTAACAACGTTGTCTTTTTA	TCGTGTGAATATATTTTCTGCACTCAAATTTTATGGTTACGCTTGGGTACATA
AAATAAACAACGTTGTCTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013138.1\|WP_007377685.1\|3536325_3538365_-\|oligopeptidase-A	unknown	unknown	gnl\|CDD\|182832
NZ_CP013138.1\|WP_007377683.1\|3534003_3534759_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP013138.1\|WP_007377691.1\|3546613_3551236_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_033015760.1\|3541180_3541492_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007377689.1\|3542169_3542751_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007377681.1\|3528951_3530661_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|369630
NZ_CP013138.1\|WP_007377687.1\|3539470_3540835_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP013138.1\|WP_007377680.1\|3527563_3528901_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP013138.1\|WP_007377692.1\|3551250_3553950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274051
NZ_CP013138.1\|WP_007377675.1\|3519508_3519892_-\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP013138.1\|WP_007377677.1\|3523321_3524317_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380511
NZ_CP013138.1\|WP_002958424.1\|3521175_3521667_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|236777
NZ_CP013138.1\|WP_083503346.1\|3524288_3525503_-\|oligosaccharide-MFS-transporter	unknown	unknown	gnl\|CDD\|236549
NZ_CP013138.1\|WP_007377684.1\|3534816_3535998_-\|response-regulator	unknown	unknown	gnl\|CDD\|381116
NZ_CP013138.1\|WP_007377688.1\|3541633_3542113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_007377679.1\|3525564_3527577_-\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|350134
NZ_CP013138.1\|WP_007377676.1\|3521923_3522649_-\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|185069
NZ_CP013138.1\|WP_033023752.1\|3542774_3546611_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013138.1\|WP_002958425.1\|3519933_3521151_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP013138.1\|WP_007377682.1\|3530694_3533634_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948

Protein	Function_ID	Function_description	E-value
NZ_CP013138.1\|WP_007377685.1\|3536325_3538365_-\|oligopeptidase-A	gnl\|CDD\|182832	PRK10911, PRK10911, oligopeptidase A; Provisional.	0
NZ_CP013138.1\|WP_007377683.1\|3534003_3534759_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	1.83111e-146
NZ_CP013138.1\|WP_007377681.1\|3528951_3530661_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	8.87204e-40
NZ_CP013138.1\|WP_007377687.1\|3539470_3540835_+\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP013138.1\|WP_007377680.1\|3527563_3528901_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.76136e-121
NZ_CP013138.1\|WP_007377692.1\|3551250_3553950_-\|hypothetical-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	3.94978e-05
NZ_CP013138.1\|WP_007377675.1\|3519508_3519892_-\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.0306e-94
NZ_CP013138.1\|WP_007377677.1\|3523321_3524317_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380511	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	6.79871e-85
NZ_CP013138.1\|WP_002958424.1\|3521175_3521667_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|236777	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR.	5.19322e-82
NZ_CP013138.1\|WP_083503346.1\|3524288_3525503_-\|oligosaccharide-MFS-transporter	gnl\|CDD\|236549	PRK09528, lacY, galactoside permease; Reviewed.	3.68949e-151
NZ_CP013138.1\|WP_007377684.1\|3534816_3535998_-\|response-regulator	gnl\|CDD\|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.97178e-32
NZ_CP013138.1\|WP_007377679.1\|3525564_3527577_-\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	5.0057e-132
NZ_CP013138.1\|WP_007377676.1\|3521923_3522649_-\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|185069	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional.	4.58982e-136
NZ_CP013138.1\|WP_002958425.1\|3519933_3521151_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP013138.1\|WP_007377682.1\|3530694_3533634_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0

>NZ_CP013138.1|WP_007377682.1|3530694_3533634_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MLIFRKNKLAVSVNTILLGCTLPFSVVAAEQLPEKAISSDGIEIIEVSYGYGSVKKKDLTGAVSTVSLEDVVDLPSGNIMKNLQGRVPGLQITTSGSPDSTATVRIRGQGLGPLGNNDPLYVVDGVPTKSGMHELNSHDIADIQVLRDAAAASIFGARSGNGVIVITTKKGNEGLDFNFSFNQSYDDFNYELNPLNTQQRSQAVWQAAVNDRSDPNAASSLYTYDWNNDFNNPQLNNVVLPEFTDAAQVQRPADTNWFDEVTRSAKVTDLNFSVSGGSDKASIYSSLGYYGSEGIVDGSEFERISFRVNSDYQLTNKLKIGENFIVTNQESNLVNDLAGNILNLAIEQQSIVPVYNEDGDWGGPVPGVTDRDNPVRLIEMNRDNVSRFNKLMGNIFVEYEAIEGLTLKSSIGLDYGQYYFRNYTRAFQAGSLNYGDQLSVTENWNSSFSWTNTAEYKLDLDANHFTFLLGTEQIDYEYEGSIGYGSGFASDDRDYAHLSQATGDVRVEGDGDKWSLNSYFARMDYNYDDRYLAGLTIRRDGSSRFGSNNNYGNFPAISAGWVISNESFYDIEFLSTLKLRASWGKTGNQEIPTDATYTTYLSRYATQSLFTDQQDEGTAYDIGGANGGTLPSGFVKAQTGNDDLKWETSTQTNIGLDFGMRYETIYGSIDWFEKTTEDILTLTNPLATLGEGAQQWVNGGTIENSGFEFLIGYADYLTFDSLDGDIDVDISFNISSAKNKVVSLPEDVVNSFGGNGNDKTIVGHSINSIYGYVADGLFQNQGEIDTHAAQSGAGLGRVRWKDLDGNGVIDENDQSFFTDTDPDFMYGLNMNFKYKNWDLNMFWQGVEGGEIRNSWRGFTDFTSLNIGSNYGDRVLDAWSVNNTDTNVPALTLIDNNGEGRQSSLFWEDGSYLKLRNLSIGYTPDEQWLSQYGISSARIYLQGSNLLTITPSGTLSQDPETPNSNFPIPKRITLGVNLSF
>NZ_CP013138.1|WP_007377681.1|3528951_3530661_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKKIKTLFAATTFVLSLASCGGSDLDVAPSGVLTEEQVSNSENVDALIIAAYSYLGNDHYTAPNFLWPTGNLRAGDAHKGGNGPGDIFAYHALSLYQPIVPDMESFPPDLIDLNNKKWTRNYTGISRANSALAVIANAPDAIENSAEKQSELRFIRSVFYFDLKIHHKHIPWIDETMTQDQILTATNRELSDQELWDKIAADFEFAAGNLPQTQDDVGRASALSAKAYLAKTLLYQAYEQNELHQVININKDKLVKVVNLIDEIEQADVYGLFDDYANNFLFETENGKESVFAIQRSLNDGSPDGRGSWPSALNAPMAGGFGCCGFHVPTENFVNAFKTDQQGLPLFDSFNDFNYDMTTDSVDPRLDHTVAMEGKPFKYDENLIHGGDSWSRAPGIYGNFTAMKDLEHPDCSCRGENGPFPIFSLNTPLIRYADVLLWKAEALIELDRYDEALPIINRIRERAKQSTDKLHNASIYNIGAYISFDSKEQAREALRFERRLELGLEGHRFFDLVRWGIAKETIDKYLAIEAVRKPYLVDAVFTKGKHEYLPIPNQQMILSGGSYTQNPGY
>NZ_CP013138.1|WP_007377680.1|3527563_3528901_-|sugar-porter-family-MFS-transporter
MKKIIYWSVTVAVAGFLFGFDTAVISGADKPIQALWNTSSLFHGLFIMSSALWGTLLGALTGNYPCDKWGRKPTLILVGVLFLVSALGSAMAPDAYSFALLRFIGGVGVGISSIVVPAYISEIAPAKYRGRLVALYQFQIVFGILVAFVSNFLIAGTSAIDWRLMLGVEAIPALAYLLMIIKAPESPRWLVQKKNEKAKARSILVTLGEQNPDQVLNDIERDKLQNSQSKLFGGSYNKAALFAFLFAAFNQLSGINFIIYYAPRVFELAGLDVNQSLLSGAGIGVVNLCFTMLGLSLIDKFGRRSLMYIGSIGYVISLSVVAWAFSTDSGGLTVVAFVFVFIAAHAIGQGTVIWVFIAEIFPNKVRSKGQSLGSGTHWFFAAAITLLMPFFLERFSATEVFTFFTLMMLGQLIFVVWFMPETKGRSLEAISSDTNNKHGALDANR
>NZ_CP013138.1|WP_007377679.1|3525564_3527577_-|glycoside-hydrolase-family-32-protein
MRTVNLVLISSFLAACSMTNQTEKTTHEGLDKLGKEAFRPAFHFTPKKHWMNDPNGMVYYQGEYHLFYQHNPDSSVWGPMHWGHAISKDMVDWQHQEIKLSPDELGTIFSGSAVVDWQNSSGFGSKENPPLVAIFTYHDDKKAAQGAIDFQTQGIAYSIDKGRTWKKYANNPVLKNPGIRDFRDPKVNWHEGTQQWIMVLAQDDHIGFYSSKDLKTWQFESNFGADWGSHAGVWECPDLIRVRIEGTDEYKYVLLVSINPGAPNGGSGTQYFVGDFDGEKFVLDSDYQKMLTATPAVFPHGLDFSDFKSGLKNWQVSGEAFHIVNAQPSNTIASSFKGSDKAIGTLTSKSFAIDHDFINFKIAGGKHHNSTAIQLLVNDEIVKTASGNNTGTMTERSWNVSHLKGQQAYIKVVDNERGDWGHIKIADIVFSDKAANEKYEPSIWLDYGTDNYAGVTFSDVQDGRHLFMGWMSNWQYANQVPTEAWRSAMTIPRELKLLQTPTGVRLASQPIKELNSLLSKTQQKATLTGAKSYQLDEFFTVEPGQFKVSFSLLNTEQVIDILLSSETGEYTKLQLNPAQGQLVLDRRQSGLIDFEDGFASLQTAPLQTGLKSYDVDIWVDKASIEVFVNKGVSSMTSIVFPTSPYDKIQVSAQQSISLSDIRLNNIAIEK
>NZ_CP013138.1|WP_083503346.1|3524288_3525503_-|oligosaccharide-MFS-transporter
MSSNYRLLSVIFFVYFMAWSFSFSLFPIWLSQEVGLNSAKVGVIFSINSIMALLVMPCYGIFQDRLGLQKTLLYFIAFFMMLIGPFVSYVYAPLLQTQFYLAAILGGGIFSCAFLAGVGVIESYIDKQSRITYFEFGKARMWGSLGWAAASYFAGLSYNLAPNLNYWLSSIAALCLIGLLVFVKVAKSNHGRIPSQAFSSTRQFKSFFKTTGLWRLSVFVIGVSCIYAVFDQQFAIYYTSFFDTPEQGREFFGYLTSAQVMLEAAALYLAVKWVNYLGVKNSLLLSGVLMAVRIYCSGIVNDSISISVLKLLHAIELPLMLIALFKYINMHFDARYSAMIYIIGFQFTTQLMASILAVVVGVVYDHLGFALAYQYLGLVISVFIVLSFFTLKKDVIKTNREQSI
>NZ_CP013138.1|WP_007377677.1|3523321_3524317_+|LacI-family-DNA-binding-transcriptional-regulator
MVTIKQVAAHAGVSFKTVSRVVNHDPTVKDANREKILRSIKELGYRPNRAASLTRRKKSNIYAIIADELLSVPYTFDIIRGAQEIAWQKNKELLILNVNETQASIDKAIESLLEYRVEGVIYSAMYHRQVIIADELKKIPTILANCFPASNNFPCVVPDEQQAGEDITDALIRKGYRRIAFLNLNENIVAAKGRKQGVINSFKRHGLPLEDLLIESVIISQADGSEISTSRESAARVIDEFKPDAIICGQDPMALEIYFVVHDKGMVVGKDIGIASFDDWGSIPQLLQPNLTTMALPHLAMGRWAMEYLIEQRTDIVHHHLAFKLIARDSF
>NZ_CP013138.1|WP_007377676.1|3521923_3522649_-|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MILDDIRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSHASALSAGASDVLGNAVIVGTVEEAIADCALTIGTSARSRTLSWPMVEPRECGEKLVTEAVNGPVALVFGRENSGLSNDELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKKVEEDDTVYPSSKQTELFYDHLEETLFNTGFIIKQHPGIVMTKLRRLFNRARPEDAEMNILRGILTSINKSIPK
>NZ_CP013138.1|WP_002958424.1|3521175_3521667_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRGPGGGYLLGREAGVISVGDIISAVDESVDATRCQGADTGCQSGMRCLTHNLWSDLSARIEEFLNNITLAELVEKSDVKEIASRQDNSINNAIKQLENIQVSCQL
>NZ_CP013138.1|WP_002958425.1|3519933_3521151_-|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATTPVDERVAKEMMQCLTMDGKFGNPASRSHRFGWQAEEAVDQARTDIADLINADPREIVFTSGATESNNLAIKGAAQFYKKKGKHVITAKTEHKAVIDTCRELERQGFEVTYMDVEENGLLDLQKLADTMRDDTVLVSIMHVNNELGVIQDIATIGEMCRERKIMFHVDAAQSAGKVLIDVQQLKVDFMSFSAHKVYGPKGVGALYVRRKPRARLEAQMHGGGHERGMRSGTLATHQLVGMGTAFKIAKQDFEKDHAHISALRNRLIDGIMADMDEVYFNGTQDQSVPGIVNISFNFVEGESLLMAVKDIAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFSIGRFTTEEEIDYTVELMKNSIGRLREMSPLWEMHQEGIDLDSVEWAHH
>NZ_CP013138.1|WP_007377675.1|3519508_3519892_-|Fe-S-cluster-assembly-scaffold-IscU
MAYSDKVIDHVENPRNVGTLDKNDPSVATGMVGAPACGDVMKLQIKVSAEGVIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAATIKNTDISAELELPPVKIHCSILAEDAIQAAIADYKSKQAK
>NZ_CP013138.1|WP_007377683.1|3534003_3534759_-|class-I-SAM-dependent-methyltransferase
MVIQCAFKECRPYLNELETRFGLAQWAEKNNGFRLNYDDSGLSLYKTDEPKLGAINVDFVTGAAAHRRKFGGGKGQAIAKAVGLNKGATPVVLDATAGLGRDGFVLASLGCNVILHERHPVVAALLYDGLQRAYNDIEIGAWMKQSMSLIFGSSHTLLSQCESMPDVVYLDPMFPHREKSALVKKEMRVFQELVGADTDADDLLEFAYPLASKRVVVKRPDYAPFLNDKTPSMQIKTKKNRFDVYVKAAMV
>NZ_CP013138.1|WP_007377684.1|3534816_3535998_-|response-regulator
MAKLILAIDDDKLVHHIIEESLAGFCKIIHAKDGDEGLRLANKYNPDIILLDIEMPGKSGFEVCQTIKKNELTKDIPVMFLSSNIELADRVKGYSAGASDYIAKPFNAEELMARIKVLYEYRQQGIKLKYDVAHANKTAEMAMTESGDMGRIIRYVGQSYHANNFSSLSEYFLAFFTHLDLDVVVVFWYESRGIFYSQQSAVCPLEQELLEQHRHAQRFVDISSSTIINYPKISLLIKNMPVDDSAKFGHYKDLFPHILEITNEKVITIQNNENSYEQATQIGIVLEDIVKQLDSQGQAKNSIAKQLIGQLSELDSAIKVQKESDNICDLTPYFTKLDKTMQLFTSANSDLAFIKCQLKQISETRNGLLASLRSNDSEVVLQNTTENNDIELF
>NZ_CP013138.1|WP_007377685.1|3536325_3538365_-|oligopeptidase-A
MSNPLIGLEGLPPFSKIKPEYVVPALKDGIELCRKAIDDVLAKGSYTWDDLVLPLEEADDKLSRMFSPVSHLNSVMNNDELREAYEQCLPLISEYSTFVGQHQGLYNAYNTLYNSDEFKTLTTAQQKTITNALRDFKLSGIALAPKQQKRYGEISARLSELASKFGNNVMDATLAWHKHITDESDLAGLPESALALAADTAKSKELDGWVFTLDFPSYLPIMTYADNRELRRETYIAFSTRASDQGPNAGEFDNSGIMSEELALRHELAQLLGFNSYAEKSLATKMAETPAQVFSFLEDLAAKSKPQAEQEVAELKAYAEQKHGISELQAWDFGYYSEKLKQEKYAISDEVLRPYFPANKVLSGLFETVNRLFGISVKEVTDFDTYHKDVRFFEIVDSSNTLRGRFYLDLYARDRKRGGAWMDDCMGRKVRANGELQTPVAYLVCNFNKAVGDKPALFTHDEVTTLFHEFGHGIHHMLTQVDAAPVAGINGVAWDAVELPSQFLENWCYEEEALSFISGHYETGEPLPKELLDKLLAAKNYNSGMQMLRQIEFSLFDFKIHNDYKAGEECQIQAVLNDVRSRTSVVNPPEFNRFQHGFSHIFAGGYSAGYYSYKWAEVLSADAYSKFEEEGIFNPQTGQAFMQNILEKGGSEEPMELFKKFRGREPNVDALLRHSGIAA
>NZ_CP013138.1|WP_007377687.1|3539470_3540835_+|glutathione-disulfide-reductase
MTQHFDYIAIGGGSGGIASANRAAMRGAKVALIEAKHMGGTCVNVGCVPKKVMWHGAQVAEAINLYAPDYGFNVEVKGFDWSKLVESREAYIGRIHKGYDSGLASNGVTVIKGFAKFVDNKTVEVNGEHYTADHILIAVGGRPSIPHIEGAEHGIDSNGFFELKEQPKRVAVIGAGYIAVELAGVLHGLGTETHLFVRKHSPLRNFDPYIVETLVDVMAAEGPTLHTESVPHKLVKENDGSVTLHLDNGKTHNVDQVIWAIGRQPTTDAINVAAAGVEVNSDGFVKVDEFQNTTAKNVYAVGDIIENGIELTPVAVKAGRTLSERLFNKELPDDLKMDYSLVPTVVFSHPPIGTIGLTEQEAISQYGEENVKIYQSGFTAMYTAVTKHRQPCKMKLVCAGPDEKVVGLHGIGFAVDEMIQGFAVAMKMGATKADFDAVVAIHPTGSEEFVTMRG
>NZ_CP013138.1|WP_033015760.1|3541180_3541492_-|hypothetical-protein
MKKNFESSSDCDAKTKSNPELEQTNIDQSTNRTMPQDIVIMLIGRWAMPTTVVLVLVTCLAGYFLELQAFTAVVGMISPVVMALIMVIKEALIGGRNKRNRKK
>NZ_CP013138.1|WP_007377688.1|3541633_3542113_-|hypothetical-protein
MANYVQAFEKVFALKREAANIYSVNIEDLTCWQTMKDIGFSSSELYQLFKHHYCEEIWLQLQGENIQQQSIANLLFKASVKGYVDELLVQFQQCFSLPISGVMCSYTLQQINQTDQPRLTIWLRLYTLYFDIYANQTHLYSQLEYSPEQHFFSPQVWLH
>NZ_CP013138.1|WP_007377689.1|3542169_3542751_-|hypothetical-protein
MHTYSETNTHELILTHQHKSTLYDAAKAKADSTRLLSEYDRKRYFDELFSHTVLAQLSDIKIELASHGYASEVITETAQLESGNTVVDFIYEVTFKFNGNLQSDDTIASGDSQMVFFTQPGSNHIACRYKTAQLNSQIQHLYFDDEGYSHFLANGESKTLWHGHLRNHSELASILDDFISLIFIEKRTSLSRI
>NZ_CP013138.1|WP_033023752.1|3542774_3546611_-|hypothetical-protein
MKLTIKQFRADIQAPQSALRASDITLDDVQSQFSEWIMQGLSQMDWPELDESDLQLDTIKLPDLVIDLAEIDWQFVMLDPFAAFKHYVYPLLSDSIARPLKQYRKQNSAQFAVINSQGVTRLNRVLLSLLIKLSKQNPQGIMAKTTLRLELKRQISEAIKTISNPLQQLQAEPNWPQLRQRLVQLFKQDKTVLLLLVAPLYNAQEQQRVSKLLACLSMAQCDRFIRLLEFTTSITEHTEREQQCILLLSLHELFVAHSAFSDRLLLQTTAVLNTPKYRQMLSMWCVLNKAQCNKKLLSDLQRIVTSAAKQSDLAIELVEHTELVNNDSRKLNIVKKVNALGVKQQQTLKQVLTLLQILADSHALPKQRLKAWFALQVIRANQTRLSVTLASKLNQITQAVGDTFRKRETPQHTVDKIVKLTDKLGSEGLFSCHVNNQKLGVLRLYSLLSRLPDVPALLLERPIKWQVKKRIPEQEIQCWFDDVNRWSKQYQQIATKKQLDEFAIQVNHNELSTVLKQIKIWLVQYQQTMSLDAYDHIVLPCVIELLKSLPIQKNSNLWLQLHSTESGHAFNRIVEKLQVECQRALSDESTTQANLTGLLFDGAQSEKAMHECLDKLYQKLNRNLVNMVQSFEQQHALTSGQTAMNNRGSITWQCYARVTHMAKFGYKLQFCYQPSLQRVYRFVLNQQVWLANELSSLLFGEIKQDEQCKQLQKIITQHVQSLGLIEKELLQKLPLIARAEVGLDAWFTPLISHATKHLTEMNSVWLQPFNIEELYTSRIANFNDEQVTVFQPQKNERRADSLTHNITQEYEVDEKPLAVQCNLQKHKVDTHITHGAVSTLVEDEQVSFTKATLNATKDDDKLRNNFLPDVLTHEDNNDSVLLNMSSDMNISHKPSETFEYSDENQVNVDKTQVTLDKNSAQVPKLNMQKIAFENNNTRQSKGGIKQTQSSHVELDIETIKDDEVHHGSALSAQNNKLNKVSSYPEETIGTHSSILVKHDAKEALIAQTLVTLPQGEKNQVVTPSETLLNALMAVERVDETQNLLAHIEKRADVQSTLQNSDLKQAIKQSKRLLTKLARTTSSECEKGVVQSAISQVKTQLAQLQQMNEQQSEPVTFDVGLVILWPFLPTLFTRLELMDEGEFKNDDTQMQAHAVLCYIANIDPLIEVSLTVNALLGLPLDTQIEEPIELNEQTIMAIDHMLHALVNRWEVLKRMPTIEFSKMFITREGTVEQTESGCHIRVVTMPQDVLMSKLPWGLGMVTLPWLGQALLHIEWKYGF
>NZ_CP013138.1|WP_007377691.1|3546613_3551236_-|hypothetical-protein
MTTLNDQNATLPAHATTVIEKENRDSLIEKFDDLKTPSGNDFEALIRSSFNQVDDPIQVVKVDDKSELEVSAPLTITSDTQTNEKLKLSANELSMTQGETQTLNLDSDSMEMFDGVLSLSKDDKKLQVLGTVQASMLNATTQVNTVQLNTDALLVNNASTEILRAELDENTAPKVTISGDANITKSVTAKSLNVTDTIDASDLVVSVSSTLANASANTLVVTGKTILSDKLEGENAIFTRHLEVSDTLGVGIDAQSTQAKLHISKRSSDMDALLRVDDYNNDTTPFFINSEGKVGVGTTDVAADFHVASDALFGDIRNAHYVKLNGLDKSHFEGNVSVSESMSVGVNELPIDAGSLAVSGKLALGKVNATAKLDVNGNTGESLLNIATNAAQFVKVTDAPLLDESKITVYQATKIKDALSVEGHVTGESVTVNQHLDSDTATINGQLIAGSTTTDSLTVNTHADIEQAQIYNQLNIASNNDQLNWECDAKLAVLSSPSNPSGVEISHFNGQAVTPIITSKMDKLGLFESNPMKSLHVGADALFAHSVDFASDINVLNNNDEAIFSVNDMNVVVGNSNFSTQLSVHGGAGIFGNTEVHGQLTVGVAGNPLLRTANSQVHITQLSEQAAIKVEHATEDFATYMAAGQLAINQPLPVSDVNFALTGQACVTGQVQIMGEANSGEEVALEVQGDTKLKNKLCVNGTAQVDDGLSLSVTNNSAQQQKDALAVQGSSHLAGTLSVTDAVDFHNGLTVTDGAVTFSDNFNANGPTTVDNTLTVNGHVSVMDGMKISPTESGNALLVEGGAQFDTDVEIEGDLNLSDKPANARLHIQEQGKQGLYIERQGGQAGLVFNDGRLGVGVERPDYALDVAEDSQFRKDVGIKGRLEVDESLHVDEYASFRSNINVYGNSELAGEARFGLPFSSVIDDESAGMPAGIAQVAIDQNHFAKAFAVYHQGAKPVVIEDGKLGVQTDSPTQALDVNGNAVFRGDVELKGTLHGSGRLECLDGAKIFGDVELRSDLTVSDDVHLKDTLLVDGISTFNRHVEVKSESTFQGSVRLNDELSVQNHTSLRDTLTVAKQATFQGGINIEGLEVGSQVSVTPAATFNNAVTVHGQVNLLSTLQMGSRITGPSMSVFGTEGEHLINVESGKDAAPLMIQANGHDALHITSEGNVGIGTQAPSYKLDIEGDVRVRNALLVDNSLSFADGAIIQSDCTVNGSLNSSTLQLGETQMIDCISADVDLGGDMASDEALATQAAVKAYIDAHCWSWAKSNKVLLIQNQQEFDEVMSRELLCNVTLLLLPHTSHPQMNRVYKLKQQVRIGSNVSIIGFNERETRIVKEHAGCRFLIHGQSDALIKSVEMRGFTFDGSLLNGGLYEGNGGAFHLRYVQSTKLNCVIENHHVNGDGGAIYGEADVSGLEAGNIKHCSATRQGGGVYGVRESTLDVSSCHSEYGAGVAYCDDCQVVARANTAVLYGGGAYKCQNLMAQGYWRSNRAEASVGHHIYSAGGDISHDDHTHQDYWWHALYLDGPVMCGTQPWRNDHF
>NZ_CP013138.1|WP_007377692.1|3551250_3553950_-|hypothetical-protein
MDNQVLQILNIAPRNTGQDLEALRQQGIARIQQFAPNTWTDHNRFDPGVTVLEVLVYVLSDLSYKLDYPIPELLAQPHSGGSVKFYEPEQVLFSHCVTEDDYRRLILDLLEVKNVHVISRQTEDSNATVLDFNVLLYSTNDDKKTNVTQLISRVFSQARCVNHRLGDITFYDVSKVTIGMTLSLQHVDNLVALLTDLYTLIGREISPDIPKYSAQQLLQLGMSTGQIYQGPKLHHGFVLDEDLHKSSYSVRLFSSDILSVLHGYENIERVNAFRFLADQNNADGNYNAQDGYEFWQIQFGSDDNEQIVNIAQLGFDEDNFFNDLNLLIDGQSYQLTEQEKNLIRQGLQVLNQAPQATQSVMLPKFEQAGHLGLSDYRSLQNELPQVYAVAEHTLNEAIDSTEKARLLQFKGYLHLFDQILADQHKQLDVLPDILSLPKPQSFESLGKLLDCMLASESLNAQQVDVFWQHACTLPHSQLSQALEEISGIEHLLDTQSLNYRQRGMQHSLESDFSIAQLTRLNQSVDHLLARFSERPVDSNLLKYKAVFALYAPSLKDERDPNPDESLLERLVLLRQYIDKCRLLSEIGDLGQNRCRGFDYLSKTLLYQHCSSMTKGIMRRLGMSHPGQMPLATHNRESFYLVEGSLLTTPALSDTLHVILPDWTTRFATVEFQDFVQRTIREYTPLHMPVQCLWLDRETMSLFERLYYGWLNYFAQTQRTRFSEQNDTLLNITEQLSQLLSSFLIEPKSTDDKGHTHWLLADLILTYQALQYGNWNAIKATILELLNTYDSEHSNTDFIITGQNADQIHDSVNENILSHDANFPDGFDADTIFYLTAQHHIDEICRPSLQEHASRQQRLAISYTPLAYLKPLFPVSISAINPISPEKYQFIVANSTPNRI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

822368 : 902087

Hokovirus(23.08%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007378323.1\|822368_822806_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.9e-25	50.0
WP_007379076.1\|822905_823472_-	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_007379077.1\|823464_824058_-	SIS domain-containing protein	NA	NA	NA	NA
WP_007379078.1\|824118_824490_-	YraN family protein	NA	NA	NA	NA
WP_033023916.1\|824500_826378_-	penicillin-binding protein activator	NA	NA	NA	NA
WP_007379080.1\|826439_827297_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-46	40.2
WP_007379114.1\|827955_828993_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007378916.1\|829754_831743_+	AAA family ATPase	NA	NA	NA	NA
WP_007378917.1\|831727_833755_+	ATP-dependent helicase	A0A1V0SG90	Hokovirus	1.2e-05	33.3
WP_007378918.1\|833944_834985_-\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	4.8e-173	82.4
WP_007378919.1\|835105_835696_-	hypothetical protein	NA	NA	NA	NA
WP_007378921.1\|836128_836320_-	hypothetical protein	NA	NA	NA	NA
WP_002961939.1\|836378_836552_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_007378923.1\|837070_837313_+	oxaloacetate decarboxylase gamma subunit	NA	NA	NA	NA
WP_007378924.1\|837324_839106_+	sodium-extruding oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA
WP_007378925.1\|839119_840250_+	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA
WP_007378926.1\|840389_841361_+	aldo/keto reductase	A0A1V0SDE7	Indivirus	4.3e-06	28.4
WP_007378927.1\|841374_841551_+	hypothetical protein	NA	NA	NA	NA
WP_007378402.1\|841625_842939_-	peptidoglycan DD-metalloendopeptidase family protein	A0A7K9	Microcystis_virus	1.7e-13	50.0
WP_007378401.1\|843262_844462_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_033023822.1\|844525_845470_-	cobalamin biosynthesis protein	NA	NA	NA	NA
WP_007378399.1\|845470_846178_-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_007378398.1\|846303_846900_-	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_007378397.1\|847015_847936_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_007378396.1\|848168_850487_+	aerobic respiration two-component sensor histidine kinase ArcB	A0A1V0SGX0	Hokovirus	6.8e-34	26.7
WP_007378395.1\|850500_851217_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_007378394.1\|851692_853297_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_007378393.1\|853446_854472_-	methyltransferase	NA	NA	NA	NA
WP_007378392.1\|854536_855262_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_007378389.1\|856517_856790_+	oxidative damage protection protein	NA	NA	NA	NA
WP_007378388.1\|856849_859624_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	8.4e-55	30.2
WP_033023821.1\|861252_862668_+	TolC family protein	NA	NA	NA	NA
WP_007378385.1\|862657_863974_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_007378384.1\|863970_867054_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.3e-72	23.9
WP_007378383.1\|867616_868180_+	UPF0149 family protein	NA	NA	NA	NA
WP_007378382.1\|868208_869531_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
WP_007378381.1\|869546_870734_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_007378380.1\|870730_871897_+	protein visC	NA	NA	NA	NA
WP_007378379.1\|872328_873063_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_007378378.1\|873264_875760_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.9e-70	33.9
WP_007378377.1\|875756_876500_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_007378852.1\|876989_879146_-	TonB-dependent receptor	NA	NA	NA	NA
WP_007378851.1\|879429_880275_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007378850.1\|880401_881001_+	hypothetical protein	NA	NA	NA	NA
WP_007378849.1\|881099_882182_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_002958029.1\|882255_882645_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_007378848.1\|882806_885698_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.1e-264	52.9
WP_007378844.1\|887200_888799_+	hypothetical protein	NA	NA	NA	NA
WP_007378843.1\|889378_889516_+	hypothetical protein	NA	NA	NA	NA
WP_007378842.1\|889678_891190_+	AAA family ATPase	NA	NA	NA	NA
WP_058230532.1\|891179_891605_+	hypothetical protein	NA	NA	NA	NA
WP_007377509.1\|891684_892653_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.0e-41	34.8
WP_007379111.1\|893047_893941_+	Abi family protein	A3QSC6	Clostridium_virus	3.0e-38	37.2
WP_007379114.1\|894868_895906_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007378456.1\|896498_897809_+	hypothetical protein	NA	NA	NA	NA
WP_007378457.1\|898095_899139_-	acyltransferase	NA	NA	NA	NA
WP_007378458.1\|899523_900525_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_007378459.1\|900597_900906_-	hypothetical protein	NA	NA	NA	NA
WP_007378460.1\|901340_902087_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1068192 : 1076350

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007376071.1\|1068192_1068957_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.5e-70	53.1
WP_007376072.1\|1068946_1069585_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.1e-37	52.6
WP_007376073.1\|1069594_1070173_+	DedA family protein	NA	NA	NA	NA
WP_007376074.1\|1070213_1071038_+	peptidoglycan DD-metalloendopeptidase family protein	G3MBP9	Bacillus_virus	4.0e-05	35.1
WP_007376075.1\|1071073_1072048_+	RNA polymerase sigma factor RpoS	A0A2I7SAT0	Vibrio_phage	6.0e-32	30.5
WP_007376076.1\|1072142_1074728_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.6e-36	26.0
WP_007376077.1\|1074749_1075238_+	CinA family protein	B5TK85	Pseudomonas_phage	6.0e-25	42.5
WP_007376078.1\|1075306_1076350_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.9e-117	64.5

DBSCAN-SWA_3

2443966 : 2474643

Pseudomonas_phage(21.43%)

portal,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007378128.1\|2443966_2444923_-	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	1.1e-30	30.3
WP_007378129.1\|2444895_2445600_-	hypothetical protein	A0A2I7RNK1	Vibrio_phage	2.1e-23	31.8
WP_007378130.1\|2445596_2446082_-	hypothetical protein	NA	NA	NA	NA
WP_050554139.1\|2446078_2446660_-	hypothetical protein	NA	NA	NA	NA
WP_007378132.1\|2446700_2446976_-	hypothetical protein	Q8H9M8	Vibrio_phage	3.4e-25	62.6
WP_007378133.1\|2447044_2448298_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	Q8H9N0	Vibrio_phage	2.2e-124	55.8
WP_007378134.1\|2448297_2448873_-\|tail	phage tail fiber protein	A0A0U4K5K2	Pseudomonas_phage	5.3e-20	33.1
WP_007378135.1\|2448869_2449673_-	hypothetical protein	A0A0U4JVX3	Pseudomonas_phage	2.1e-30	45.3
WP_007378136.1\|2449665_2450814_-	bacteriophage protein	A0A1L5C2D1	Pseudoalteromonas_phage	2.0e-58	34.5
WP_007378137.1\|2450803_2451133_-	DUF2590 family protein	A0A1D9C9T2	Salinivibrio_phage	1.6e-13	39.0
WP_007378138.1\|2451132_2453805_-\|tail	phage tail tape measure protein	R9TRA2	Vibrio_phage	1.0e-105	42.2
WP_007378140.1\|2453975_2454263_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.9e-10	38.3
WP_007378141.1\|2454252_2454885_-	hypothetical protein	NA	NA	NA	NA
WP_007378142.1\|2454884_2455334_-	DUF2597 family protein	A0A1L5C2D0	Pseudoalteromonas_phage	2.0e-30	43.4
WP_007378143.1\|2455344_2456445_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	3.0e-64	39.6
WP_007378144.1\|2456466_2457099_-	phage virion morphogenesis protein	A5X9H9	Aeromonas_virus	8.4e-19	32.5
WP_007378145.1\|2457091_2457565_-	hypothetical protein	NA	NA	NA	NA
WP_007378146.1\|2457561_2457999_-	hypothetical protein	NA	NA	NA	NA
WP_007378147.1\|2458110_2458839_-\|terminase	terminase endonuclease subunit	NA	NA	NA	NA
WP_007378148.1\|2458923_2459961_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	1.5e-73	45.4
WP_007378149.1\|2460004_2460886_-\|capsid	phage capsid scaffolding protein	Q94MZ5	Haemophilus_virus	3.3e-21	28.1
WP_007378150.1\|2461091_2462873_+\|terminase	terminase ATPase subunit	R4JDJ3	Burkholderia_phage	3.4e-118	39.8
WP_007378151.1\|2462872_2463940_+\|portal	phage portal protein	A5X9H1	Aeromonas_virus	2.2e-59	43.3
WP_007378152.1\|2463936_2464263_+	hypothetical protein	NA	NA	NA	NA
WP_007378153.1\|2464262_2464661_+	hypothetical protein	A0A1B1ITB4	uncultured_Mediterranean_phage	7.6e-18	36.4
WP_007378154.1\|2464690_2465488_-	hypothetical protein	NA	NA	NA	NA
WP_007378155.1\|2465524_2465770_-	hypothetical protein	A0A2I7RQ60	Vibrio_phage	1.9e-11	48.7
WP_007378156.1\|2466020_2466194_+	hypothetical protein	A0A1L5C2C1	Pseudoalteromonas_phage	1.6e-20	98.0
WP_033023791.1\|2466277_2466811_-	hypothetical protein	NA	NA	NA	NA
WP_007378157.1\|2466931_2467177_+	ogr/Delta-like zinc finger family protein	A0A1L5C2B5	Pseudoalteromonas_phage	1.6e-34	85.2
WP_007378158.1\|2467173_2467524_-	hypothetical protein	NA	NA	NA	NA
WP_007378159.1\|2467711_2467891_+	addiction module toxin, HicA family	A0A0D4DC32	Acinetobacter_phage	1.6e-15	64.4
WP_007378160.1\|2467945_2468362_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	1.8e-33	52.2
WP_007378161.1\|2468401_2469007_-	KilA-N domain-containing protein	Q71TC0	Escherichia_phage	1.2e-17	47.0
WP_007378162.1\|2469412_2472004_-	replication endonuclease	A0A1L5C2A7	Pseudoalteromonas_phage	5.6e-178	39.9
WP_007378163.1\|2472004_2472289_-	hypothetical protein	A0A1L5C2B9	Pseudoalteromonas_phage	3.4e-28	68.1
WP_007378164.1\|2472321_2472921_-	hypothetical protein	A0A067ZG73	Vibrio_phage	1.8e-39	43.2
WP_007378165.1\|2472930_2473344_-	hypothetical protein	NA	NA	NA	NA
WP_007378166.1\|2473353_2473647_-	hypothetical protein	NA	NA	NA	NA
WP_007378167.1\|2473643_2473862_-	hypothetical protein	NA	NA	NA	NA
WP_007378168.1\|2474016_2474643_+	helix-turn-helix domain-containing protein	U5P0T5	Shigella_phage	1.1e-34	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013139

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013138

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection