CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019397	Gluconobacter oxydans H24 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	2	0
NC_019396	Gluconobacter oxydans H24, complete sequence	2 crisprs	DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	0	8	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019396_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019396_1

25559-25953

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCATGTGCGGGGATGAACCG	PILER-CR
GTGTTCCCCGCATGTGCGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGCATGTGCGGGGATGAACCG	CRT

6 spacers

DEDDh

The CRISPR arrays of NC_019396_1

>merge|NC_019396|1|25559-25953|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCATGTGCGGGGATGAACCGGTGCTGTTTTGGACTTTTTCGGGCCCGGTCAAGTGTTCCCCGCATGTGCGGGGATGAACCGCCATTTGCGCGGCCGTCACCAAATCCCGTGAAGTGTTCCCCGCATGTGCGGGGATGAACCGAAGGACAGCGCAAGCGGCTTTCAACAGGTACAGTGTTCCCCGCATGTGCGGGGATGAACCGGTGATTTTCCGGGTCACAGATACCTCCCATTCGTGTTCCCCGCATGTGCGGGGATGAACCGACGCCGGCAGCCGTGTAGCCGGTCAGAGCAATGTGTTCCCCGCATGTGCGGGGATGAACCGGACGGCATTTTTCAGAAGCACGCGCGCATCATGTGTTCCCCGCATGTGTGGGGATGAGCCG

>NC_019396|1|1|25559-25892|PILER-CR
GTGTTCCCCGCATGTGCGGGGATGAACCG	GTGCTGTTTTGGACTTTTTCGGGCCCGGTCAA
GTGTTCCCCGCATGTGCGGGGATGAACCG	CCATTTGCGCGGCCGTCACCAAATCCCGTGAA
GTGTTCCCCGCATGTGCGGGGATGAACCG	AAGGACAGCGCAAGCGGCTTTCAACAGGTACA
GTGTTCCCCGCATGTGCGGGGATGAACCG	GTGATTTTCCGGGTCACAGATACCTCCCATTC
GTGTTCCCCGCATGTGCGGGGATGAACCG	ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT
GTGTTCCCCGCATGTGCGGGGATGAACCG

>NC_019396|1|1|25559-25953|CRISPRCasFinder
GTGTTCCCCGCATGTGCGGGGATGAACCG	GTGCTGTTTTGGACTTTTTCGGGCCCGGTCAA
GTGTTCCCCGCATGTGCGGGGATGAACCG	CCATTTGCGCGGCCGTCACCAAATCCCGTGAA
GTGTTCCCCGCATGTGCGGGGATGAACCG	AAGGACAGCGCAAGCGGCTTTCAACAGGTACA
GTGTTCCCCGCATGTGCGGGGATGAACCG	GTGATTTTCCGGGTCACAGATACCTCCCATTC
GTGTTCCCCGCATGTGCGGGGATGAACCG	ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT
GTGTTCCCCGCATGTGCGGGGATGAACCG	GACGGCATTTTTCAGAAGCACGCGCGCATCAT
GTGTTCCCCGCATGTGTGGGGATGAGCCG

>NC_019396|1|1|25559-25953|CRT
GTGTTCCCCGCATGTGCGGGGATGAACCG	GTGCTGTTTTGGACTTTTTCGGGCCCGGTCAA
GTGTTCCCCGCATGTGCGGGGATGAACCG	CCATTTGCGCGGCCGTCACCAAATCCCGTGAA
GTGTTCCCCGCATGTGCGGGGATGAACCG	AAGGACAGCGCAAGCGGCTTTCAACAGGTACA
GTGTTCCCCGCATGTGCGGGGATGAACCG	GTGATTTTCCGGGTCACAGATACCTCCCATTC
GTGTTCCCCGCATGTGCGGGGATGAACCG	ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT
GTGTTCCCCGCATGTGCGGGGATGAACCG	GACGGCATTTTTCAGAAGCACGCGCGCATCAT
GTGTTCCCCGCATGTGTGGGGATGAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019396.1\|WP_015072111.1\|32314_33646_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NC_019396.1\|WP_015072101.1\|22674_23244_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_019396.1\|WP_015072110.1\|31853_32246_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142
NC_019396.1\|WP_015072108.1\|30591_31026_-\|response-regulator	unknown	unknown	gnl\|CDD\|381145
NC_019396.1\|WP_029495695.1\|18194_19103_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NC_019396.1\|WP_016737741.1\|27122_27695_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NC_019396.1\|WP_015072109.1\|31143_31857_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|214473
NC_019396.1\|WP_015072103.1\|23874_25320_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NC_019396.1\|WP_015072104.1\|26129_26978_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NC_019396.1\|WP_016737740.1\|28245_29868_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_019396.1\|WP_015072098.1\|20394_21225_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_019396.1\|WP_015072097.1\|19785_20391_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_019396.1\|WP_015072096.1\|19102_19789_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99835
NC_019396.1\|WP_015072102.1\|23283_23859_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_019396.1\|WP_015072107.1\|29943_30318_+\|hypothetical-protein	unknown	unknown	unknown
NC_019396.1\|WP_015072112.1\|33638_36320_+\|DUF4175-domain-containing-protein	unknown	unknown	gnl\|CDD\|372724
NC_019396.1\|WP_015072105.1\|27736_28186_+\|CHRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377837
NC_019396.1\|WP_016737742.1\|25316_25454_+\|hypothetical-protein	unknown	unknown	unknown
NC_019396.1\|WP_015072099.1\|21221_21986_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NC_019396.1\|WP_015072100.1\|22002_22638_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264

Protein	Function_ID	Function_description	E-value
NC_019396.1\|WP_015072111.1\|32314_33646_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.71915e-168
NC_019396.1\|WP_015072101.1\|22674_23244_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	9.40223e-26
NC_019396.1\|WP_015072110.1\|31853_32246_-\|cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	1.67244e-58
NC_019396.1\|WP_015072108.1\|30591_31026_-\|response-regulator	gnl\|CDD\|381145	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase. Typically, two-component regulatory systems (TCSs) consist of a sensor (histidine kinase) that responds to specific input(s) by modifying the output of a cognate response regulator (RR). TCSs allow organisms to sense and respond to changes in environmental conditions. Hybrid sensor histidine kinase (HK)/response regulators contain all the elements of a classical TCS in a single polypeptide chain. Pseudomonas savastanoi blue-light-activated histidine kinase is a photosensitive HK and RR that is involved in increased bacterial virulence upon exposure to light. RRs share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.81027e-21
NC_019396.1\|WP_029495695.1\|18194_19103_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	8.64915e-60
NC_019396.1\|WP_016737741.1\|27122_27695_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.26727e-32
NC_019396.1\|WP_015072109.1\|31143_31857_-\|trypsin-like-serine-protease	gnl\|CDD\|214473	smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.	1.3902e-05
NC_019396.1\|WP_015072099.1\|21221_21986_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	5.81667e-89
NC_019396.1\|WP_015072104.1\|26129_26978_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	1.20331e-99
NC_019396.1\|WP_016737740.1\|28245_29868_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_019396.1\|WP_015072098.1\|20394_21225_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.96915e-111
NC_019396.1\|WP_015072097.1\|19785_20391_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	1.50207e-72
NC_019396.1\|WP_015072096.1\|19102_19789_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|99835	cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins. This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	3.79325e-93
NC_019396.1\|WP_015072102.1\|23283_23859_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.27385e-26
NC_019396.1\|WP_015072112.1\|33638_36320_+\|DUF4175-domain-containing-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	0
NC_019396.1\|WP_015072105.1\|27736_28186_+\|CHRD-domain-containing-protein	gnl\|CDD\|377837	pfam07452, CHRD, CHRD domain. CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologs. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made. Its most conserved feature is a GE[I/L]RCG[V/I/L] motif towards its C-terminal end Most bacterial proteins in this family have only one CHRD domain, whereas it is found repeated in many eukaryotic proteins such as human chordin and Drosophila SOG..	1.05462e-16
NC_019396.1\|WP_015072103.1\|23874_25320_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NC_019396.1\|WP_015072100.1\|22002_22638_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.77125e-27

>NC_019396.1|WP_016737742.1|25316_25454_+|hypothetical-protein
MTRFLLVGLTLVALSTGLSACGKKGAPHAPGPASDITYPRSYPPE
>NC_019396.1|WP_015072103.1|23874_25320_+|argininosuccinate-lyase
MKNVPVEKETDAASSFEGTAANPQWGGRFASGPAAIMSEINASISFDKVLWRQDIRGSLAHAAMLQKVGLLTETELAEIRQGLGDIAQEIGDGRFEFSPALEDIHMNIEARLSERIGEAGKRLHTARSRNDQVATDFRLWVRDAIDSLQEQTASLMRALAKRALEYHATPMPGFTHLQVAQPVTFGHHLLAYVEMLSRDRGRLRDARARLNECPLGSAALAGTSFPIDRAMTAAALDFDRPTANSLDAVSDRDFALEFLSALSLQAMHLSRLAEEIVMWASAPFGFVTLSDAFTTGSSIMPQKRNPDAAELVRAKIGRIMGNFTGLLTVMKGLPLAYAKDTQEDKEPVFDATEAMTLSLAAMDGMIRDLKPNETRMREVAGMGFSTATDLADWLVRELRVPFRTAHHVTGRLVGLAEQRGCDLADLSLEDMQAVEPGINAGIFDVLTVESSLASRTSLGGTAPSNVRQQAQAWLEKLGDAA
>NC_019396.1|WP_015072102.1|23283_23859_-|TlpA-family-protein-disulfide-reductase
MKQKQIDRRTLLSGGLSLAAAASLCNSAHAEDRPKPIVPGLEPGPARLTPLELRLERPEGGTRSLSAWRGAPFVLHVWATWCGPCKIELPQLDAFMKKLGDDSPIVPVAMSSHGPDEVAAFLKNLNLTHIDPWTADWHEFRAWLGVSELSFPGSYLIDPEGRLRAAIEDETDWGAPDAVSQFRKVIAALKE
>NC_019396.1|WP_015072101.1|22674_23244_-|TlpA-family-protein-disulfide-reductase
MTVPIGRRGFIAGVGCASIAAALSGAAWAEQQENLRSVKSLKPGKAKLDPIALQLSGPAGATESLESQRGKPFLLHVWATWCGPCKQELPKLDAFMASLGTDCPIIPVAVASATPEKVAAFLDAAGLKHVPAWTMNKAAYKAWLKTSDVAIPVTYLIDGSGHLRASADGGINWSAPDAAQQLHDILSEL
>NC_019396.1|WP_015072100.1|22002_22638_-|TlpA-family-protein-disulfide-reductase
MAFSLTRRAALTGAAGLLATSRAFSASAEDKGIPFVPNSFGVLAKPRVLPALSVKNEQDQDVPLSHWFGKPFVLHFWATWCPPCIRELPSVNVTAKALGADGPQIVTVAVRGSTVPKVRAFYDAHQIDTLPLLVDPTSSVMMETADQDALVASVKQVRPGDLKDLTPSVMSLHGVPRSLLLNARGEVVAEAIGNMDWSADAVRHTLSALAG
>NC_019396.1|WP_015072099.1|21221_21986_-|N-formylglutamate-amidohydrolase
MSLSLLGADDPAPFLLFPETRPSPFVLVSDHAGKAVPRTLGSLGVEEAEWQRHIAWDIGILGVGRTLHGMLGATLIEQVYSRLVIDCNRAPGHPTSMPHISDGTPVPGNSEAPLQCRARREREILHPYHDAIAEALLERAGRPTALIALHSFTPEMAGVKRPWQIGILHHKDSRLAQAMIEMLRAEGDLCVGDNEPYVLTDSNEYTVPRHAEANGLPYLEIELRQDLIADDAGQREWAERLARLLPQVWERLAA
>NC_019396.1|WP_015072098.1|20394_21225_-|shikimate-dehydrogenase
MIDGHTKLAGVMGWPVEHSRSPLLHNHWCRVHGVNGAYVPLPTRPEHFEAALKGLAAAGFQGVNVTIPHKEAAMRACDRLTETARRAGAVNTVRFENGQIIGDCTDGTGFCDNLTAHDVKLSGRALILGAGGAARAVAAALLDRGCEVIVANRTMERAEAMVEALKGGEAVEWHDWPSLLSGCSLLVNATSLGMNGKADIDWKPLLRQAGVNLCVTDIVYTPRDTPLLKAAQKEGLRTVDGLGMLIHQARAGFRAWFGVDPEADEATFNLLAASLR
>NC_019396.1|WP_015072097.1|19785_20391_-|dephospho-CoA-kinase
MKIIGLTGGMAAGKSTVAALFRRTGVPVFDADAAVRALQAPGGKALPEIARLFPGTVMDGQLDRHALRQAVVGDKLALKQLEGVMHPLVRAERARFLRQCRARKEPFCVLDIPLLMEIGEDRNCDLVVVVQAPITTRLSRIRQRGRGAARMTEEQARSLLARQMPDQERRRRAHIVIRTGLSRGSAARQVRALLHRLREAS
>NC_019396.1|WP_015072096.1|19102_19789_-|DNA-polymerase-III-subunit-epsilon
MKRSILFDTETTGFDPDQGDRIIEIAAIELIDDLPTTNYYHVMVHPERDIPAEATKVHGFRIEDLEGAPKFAEIADGFLEFIGDSPMIAHNARFDFKFVNAELEKCGRAPLDYASRAIDTVEMARKKYPGMPASLDALCRRFNIDLSQRGTHNALLDCKLLAEVYVELMGGRQRGLGLAGPSRNRNITGAADFLANRAPRKMASPSAEELAAHTAFVDGLKDPVWRRD
>NC_019396.1|WP_029495695.1|18194_19103_-|glycosyltransferase-family-9-protein
MKILFITSNRLGDAVISTGVLSALQARYPSALFTVVCGPVAAGLFEPDPRCERVITMEKRRHDRHWLDLWRQCVRTRWFLVVDLRGSLLSLTLRTRRRLIVRGGRRDGRKVEQLGQALGRNQAPKPRVWVSDEQERSARALLPDGKWLALGPTANWDGKIWPPERFAALAEGMRAQSLRPVLFYGPGEAEKERAKPVLEALPDALDLGGNRELGEVAALLRRCALFVGNDSGLMHLAAAAGTPTLGLFGPSRMSEYAPSGENAFALSAPGTEGEAALTGLSASEVLDVARAILNGKAEAFRT
>NC_019396.1|WP_015072104.1|26129_26978_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MTLSPVTRFAPSPTGYLHLGHVVSALHARKTAGPSGRFLMRIEDIDTTRCTPALTEALREDLQWLGLWPVEPVLQQSRHMGAYASVLDHLRQRGLLYPCFCTRSDIAAAASGQRAPDGSAPYPGTCRTRALNTGALESGRAPTWRLDMQRALNEIHGVPSWYEAGHGRIAGRADEFGDIVLGRRDTGVSYHLCVTHDDALQGVTCITRGQDLYAATSIHRVIQTLMKWPEPEYRHHALILDESGKKLSKRDGAEGVRALRAMGWPAKDVLAHPLVVKALADS
>NC_019396.1|WP_016737741.1|27122_27695_+|HNH-endonuclease
MRVVPVSSQHFPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVSVLSEYEDGVVHSPSMTMRLPSVIALKDYIPSARKPAFTRFNVFLRDNFSCQYCHDRLPTHELTFDHVIPRAKGGKTTWQNVVTACSPCNLLKGSRLPKEIGMYPHRKPDQPSSRLLQENGRTFPPHYLHESWRDYLYWNTELET
>NC_019396.1|WP_015072105.1|27736_28186_+|CHRD-domain-containing-protein
MRKSFLTAALALGLSVAALPASAETIHLFGPFKTEHGATSPIKGSASAILDTTKNTLTYRFEDNGLTGPVTAAHLHGPAADGEDAGVIVPINGPYQTRMTGTLNLSADQVKDVLAGKSYINLHTEKFPDGEARAQLTTELTGHKHHHNH
>NC_019396.1|WP_016737740.1|28245_29868_-|glutamine-hydrolyzing-GMP-synthase
MNTEREAITLTQQDASTVAKLDETLHEDRILILDFGSQVTQLIARRVRESGVYCEIWPFTATDEKIREFNPRGIILSGSPASVHDENAPAIPDIVFSLNRPVLGICYGQQAMCQKLGGKVETHEHREFGRAYIDIAEDCALFRGVWARGKREQVWMSHGDRVTQLPPGFRAVAYSEGAPFAIIADEGRRLYGVQFHPEVVHTPHGAALIRNFTHDVAGCSGTWTMAGFRELEIARIRKQVGEGHVICGLSGGVDSSVAAKLIHDAIGDQLTCIFVDPGILRAGEADEVVKTFRGRFNIRLVHRDASDLFLGELAGVKDPEVKRKTIGRLFIEVFEEEAAKLGGAQFLAQGTLYPDVIESVSFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRELGRELGIPENIVGRHPFPGPGLAIRIPGEIDKEKLDLLRKVDAIYLEEIRNAGLYDAIWQAFAVLLPVRTVGVMGDGRTYDQACALRAVTSTDGMTAEVYPFDFAFLNRVAGRIVNEVRGINRVTYDITSKPPGTIEWE
>NC_019396.1|WP_015072107.1|29943_30318_+|hypothetical-protein
MRPIALFSFSALAFLAACATPDPGQDPSGRWVGALVTDQGTCPTERTSTLEIRGKNIVFTPADGSQVLTGLYQPSTHHYHAELASKDTSGHPSPLVFNGYPVGQAIGGTFGSAACRAHITMTRK
>NC_019396.1|WP_015072108.1|30591_31026_-|response-regulator
MYVMSGKGTTSVGRSHGMHAGGAYLAARKNVLVVEDQALLRFLAADMLEDAGYNPILAATADEAMDILLKGETVDLVFSDVNMPGRINGLDLAETVVQRWPEIGVVLTSGAFLKEQRTLPEKTAFLPKPYEWEDVYRALEELTH
>NC_019396.1|WP_015072109.1|31143_31857_-|trypsin-like-serine-protease
MKFRSCLLISFLELAGLGGAGHTFARPQSVLPGLGNGARRELIDVNKAPWRILARVQTELGVRCTGFAVAPTVVMTAAHCLWLPATHHYIQPKDIHVLMGYARGGYRQHAQVARFVIPAGYDPANEAGTASNDRATLLMDHPVAVAADLLPAVEVRDGMSAMLVGYPQDRSEVPFGDVECHINGVTVSGLVHHDCEATKGVSGAPLLVRAPEGAWGVGALAVGADVGPGGLAAPLIR
>NC_019396.1|WP_015072110.1|31853_32246_-|cytidine-deaminase
MMKELISRALDARSRAYAPYSRYQVGAALRCDGVIYSGCNVENAAYPLGTCAEGGAISAMVLGGGQRIEEIVIVGGGDQPCTPCGGCRQKLREFGQPDLKVHMISSTGKLLLTRTLADLLPDAFGPDNLG
>NC_019396.1|WP_015072111.1|32314_33646_+|diaminopimelate-decarboxylase
MNAPFSAPSLNDLLTSRPPLEVNARDGLLFEGVPLHVIAAVAGTPCWITGAGTLRRRANALKAAFEARNLPVHFHFAMKSQDHQATLTLLRDCGYGVDIVSGGEMKRALHAGIGPDGIVFSGVGKSDLELREAVEREIRQINVESVEELYRLNEIARACGKVARAALRVNPDVDAQTHDKISTGRAGDKFGIEHRRAVELYAEAATLDHVQLIGLAVHLGSQMLTAEPFRQGYSRLADMVREIRAAGHAVETIDCGGGLGIRYKDEVAPPPEMLAGVIAETLGDLDVALSIEPGRWLSAPTGVLLSRVIETKAGNPDFVVIDAAMNDLARPALYDSWHGILPVAPAAFSDALKPWDVVGPVCESSDIFAKDRILPASLKRGDLVALLDTGAYGSVMSSTYNSRPFAAQVLVDNGRWEIIRPRQTVEDLIAAETVPDWLLPAHG
>NC_019396.1|WP_015072112.1|33638_36320_+|DUF4175-domain-containing-protein
MADPIAATARLVSIRRRARRVLWWERAWPALRWSLLLAAFYGLASLARVPQSLPDWLHALFELIVLGTALWLGIKGLRSIPQPTEAQVDRRIERDSHLAYQPLLTLADRPAYAGNGEQAAIWAQHVHRVVASLGPLKVGFPRPETTTGEKLGLASVAVALAAAIALSGPHSLSRLHSGFVPGVDDDSVPLPSVQAWIDRPSYAPGAPVFLSQAQQAKPVTVPQGAILNATITGANGRPVLRGATSLSHDRLDEKSWSEKATLQQSGTVTLSSRGRTLGSWRVTVEPDLPPVVSWDGKPAPQKDDWRTSLPWHVQQSYGVASLDAEIRLPGISKGRTLRVPIPLDGHPKDAKGEARPDLSSDPFAGMEVEGRLHATSVSGHESRSDAIRFRLGARKFSDPLARAIVSLRRRLMLGQERPQQAADELKLLTQTTDVLALLAPLGLDIASLQHNAPQEAAEQVPGQLWALALYLDDLRRDGPEIADAAAAVRAAQQSVQQQLDHMQELGEKGHSLAEQEELQRRTKDLKDALNRRMQLLFQKAAQSGIMMPQSGTSSADPWSDQMQRLQNDASQGHGDEALRKLQQMEDMAEHMRQATPEDLKALAAQMKAQEEARAQRAALHDLVHRETTLLDHAQARLSAARKAALPPDQQDGHEDISQMSTADLLRQLGMQPPPNMEQAAPGKPAAPTDPATVAAQSPERRADHAFQRALERIDDILGRRVKDLTGKPATAFDKAKADMQDARKALADRHDDDAATAEQKVLADLSEAGKQMRQNQKSGGSGQGKGGSLSFIPSMGSGGSGQQQHGAAGQQGDGGDQPDAGDDDDGDEDRKDQDPLGRKLGEGQNGKDSDAHIPDRNARDRARDIERELRRRASDRTRPQGELDYLERLLKSF

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Crispr_ID: NC_019396_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019396_2

99852-100125

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCACACGCGGGGATGAACCG	PILER-CR
GTGTTCCCCGCACACGCGGGGATGAACCGC	CRISPRCasFinder
GTGTTCCCCGCACACGCGGGGATGAACCG	CRT

4 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_019396_2

>merge|NC_019396|2|99852-100125|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCACACGCGGGGATGAACCGCACTTCCACGGCAGCAACCTGCGCAACCTCTTGTGTTCCCCGCACACGCGGGGATGAACCGCGGACGGGCTACACTGAGGGCGTTGGTCAGCCGTGTTCCCCGCACACGCGGGGATGAACCGCCGTATCGCTACGGTACAGGTTTCCGTCCTTGGTGTTCCCCGCACACGCGGGGATGAACCGGGCGGCCCGAACGTGTTCACCACGTCCTGGATGTGTTCCCCGCACACGCGGGGATAAATCTT

>NC_019396|2|2|99852-100063|PILER-CR
GTGTTCCCCGCACACGCGGGGATGAACCG	CACTTCCACGGCAGCAACCTGCGCAACCTCTT
GTGTTCCCCGCACACGCGGGGATGAACCG	CGGACGGGCTACACTGAGGGCGTTGGTCAGCC
GTGTTCCCCGCACACGCGGGGATGAACCG	CCGTATCGCTACGGTACAGGTTTCCGTCCTTG
GTGTTCCCCGCACACGCGGGGATGAACCG

>NC_019396|2|2|99852-100125|CRISPRCasFinder
GTGTTCCCCGCACACGCGGGGATGAACCGC	ACTTCCACGGCAGCAACCTGCGCAACCTCTT
GTGTTCCCCGCACACGCGGGGATGAACCGC	GGACGGGCTACACTGAGGGCGTTGGTCAGCC
GTGTTCCCCGCACACGCGGGGATGAACCGC	CGTATCGCTACGGTACAGGTTTCCGTCCTTG
GTGTTCCCCGCACACGCGGGGATGAACCGG	GCGGCCCGAACGTGTTCACCACGTCCTGGAT
GTGTTCCCCGCACACGCGGGGATAAATCTT

>NC_019396|2|2|99852-100124|CRT
GTGTTCCCCGCACACGCGGGGATGAACCG	CACTTCCACGGCAGCAACCTGCGCAACCTCTT
GTGTTCCCCGCACACGCGGGGATGAACCG	CGGACGGGCTACACTGAGGGCGTTGGTCAGCC
GTGTTCCCCGCACACGCGGGGATGAACCG	CCGTATCGCTACGGTACAGGTTTCCGTCCTTG
GTGTTCCCCGCACACGCGGGGATGAACCG	GGCGGCCCGAACGTGTTCACCACGTCCTGGAT
GTGTTCCCCGCACACGCGGGGATAAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019396.1\|WP_015072158.1\|104008_104764_-\|Tim44-domain-containing-protein	unknown	unknown	gnl\|CDD\|214950
NC_019396.1\|WP_100225146.1\|89762_90311_-\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|225396
NC_019396.1\|WP_015072161.1\|107253_108327_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NC_019396.1\|WP_016737723.1\|99460_99790_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_019396.1\|WP_015072144.1\|88667_89759_+\|hypothetical-protein	unknown	unknown	unknown
NC_019396.1\|WP_015072159.1\|105477_106143_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NC_019396.1\|WP_015072155.1\|100197_100404_+\|hypothetical-protein	unknown	unknown	unknown
NC_019396.1\|WP_015072157.1\|102847_103993_-\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|377065
NC_019396.1\|WP_015072149.1\|95259_95868_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_019396.1\|WP_015072160.1\|106145_107219_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_019396.1\|WP_015072148.1\|93641_95270_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_019396.1\|WP_015072156.1\|100463_101924_-\|cytochrome-c-peroxidase	unknown	unknown	gnl\|CDD\|224771
NC_019396.1\|WP_015072151.1\|96934_97795_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NC_019396.1\|WP_015072162.1\|108351_109176_+\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NC_019396.1\|WP_007282384.1\|102020_102851_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_019396.1\|WP_015072152.1\|97791_98511_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_019396.1\|WP_015072150.1\|95879_96929_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_019396.1\|WP_144032630.1\|90294_93180_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_019396.1\|WP_016737722.1\|104944_105469_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|376817
NC_019396.1\|WP_015072153.1\|98517_99480_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
NC_019396.1\|WP_015072158.1\|104008_104764_-\|Tim44-domain-containing-protein	gnl\|CDD\|214950	smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region.	1.00711e-32
NC_019396.1\|WP_100225146.1\|89762_90311_-\|Smr/MutS-family-protein	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	4.88084e-19
NC_019396.1\|WP_015072161.1\|107253_108327_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	1.83101e-165
NC_019396.1\|WP_016737723.1\|99460_99790_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	7.31161e-56
NC_019396.1\|WP_015072159.1\|105477_106143_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	4.4734e-32
NC_019396.1\|WP_015072149.1\|95259_95868_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.55352e-18
NC_019396.1\|WP_015072157.1\|102847_103993_-\|murein-transglycosylase-A	gnl\|CDD\|377065	pfam03562, MltA, MltA specific insert domain. This beta barrel domain is found inserted in the MltA a murein degrading transglycosylase enzyme. This domain may be involved in peptidoglycan binding.	1.46757e-98
NC_019396.1\|WP_144032630.1\|90294_93180_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.92548e-122
NC_019396.1\|WP_015072160.1\|106145_107219_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.90089e-133
NC_019396.1\|WP_015072148.1\|93641_95270_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	7.73752e-107
NC_019396.1\|WP_015072156.1\|100463_101924_-\|cytochrome-c-peroxidase	gnl\|CDD\|224771	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism].	2.23935e-104
NC_019396.1\|WP_015072151.1\|96934_97795_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	4.54013e-33
NC_019396.1\|WP_015072162.1\|108351_109176_+\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	2.28031e-108
NC_019396.1\|WP_007282384.1\|102020_102851_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.33567e-47
NC_019396.1\|WP_015072152.1\|97791_98511_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.37249e-52
NC_019396.1\|WP_015072150.1\|95879_96929_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.3109e-113
NC_019396.1\|WP_016737722.1\|104944_105469_+\|protein-export-chaperone-SecB	gnl\|CDD\|376817	pfam02556, SecB, Preprotein translocase subunit SecB. This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm.	9.67104e-55
NC_019396.1\|WP_015072153.1\|98517_99480_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.2163e-136

>NC_019396.1|WP_016737723.1|99460_99790_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVIVVENAPPRLRGRLAVWLLEIRAGVYVGTYGRKVREMIWQQVCAYIEQGNAVIAWAAPNDAGFEFDTCGANRRCPVDLDGFRLVEFGPEAALPLLPGPLNSPRNRR
>NC_019396.1|WP_015072153.1|98517_99480_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTERPVPGLPPPRPIPIRERSSILFVEKGRLDVLDGAFVMVDERGIRTHIPIGGLCCLMLEPGTRVSHAATALAARAGTLLIWVGEAGVRLYASGQPGGARADRLLYQARLALDETARLNVVRQMYVLRFGEEAPARRSVDQLRGIEGARVRETYRLLALQYGVKWEGRRYDPREWSSANDINRALSTATSCLYGICEAAILAAGYAPAIGFLHTGKPQSFVYDIADIVKFETVVPEAFRVVAALEKGRMLDGEAITNVTGTVRRRCRDAFRRTRILERLVPMIEDVLSAGGLSPPGAPEEAMPVAFEDPEGLADAGHRG
>NC_019396.1|WP_015072152.1|97791_98511_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTQLYLSRARLRRDSQALSALSSLLLPHDTSAQIKSGHHLIWALFGDTPERNRDFLWRQEEPGSFYILSERPPADPHGLFEIDAPRPFEPNLRTGDALEFRLRANATISRHIPGQKRGKRHDVVMDALHHIPGRQPSEKGGTSLRAEARLALVQDAGSAWLSRQAQDRGFSLPTPPRVDSYDTVVIPRTPQQSPAIFGVMEFEGILTVTNPEIFLTSLQSGFGRAKSFGCGLMLIRRAW
>NC_019396.1|WP_015072151.1|96934_97795_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MPRYLTFALIAPLSAFGGVAVGERRDGFDRPARSAILGLVAACLGLTRDDPRQDDLARDYGLALLCHAPGQLLTDFHTAQMPSAQRNTRFRTRAQELATPDLNTTLSRRDYRAGSWHLGALWLRTETAPWSLDDLAQAMRTPVFTPYLGRKSCPLGLPLAPDLQDHENAVSALRDRYRQGPEGRLSLTSSSSPQAGHQERTTLRHTLARTAPNRRHWAEWDRLTTPAEAQSEHTMRHMIVMDQQDADQHGLPDETIQTVFRRDQPRSRTRWQFDLREETVMTVPVL
>NC_019396.1|WP_015072150.1|95879_96929_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFLQLHLLTFFPPSNLNRDDLGRPKTAMVGGANRLRLSSQALKRAWRTSEAFEATLEHHLGKRTQRMGQEILDHLIAAGQDVKKATKIAREVAGIFGKLKKEETSTAIEQLAFISPREKAAALELADRMAGGEKIDPKKEAASVLLRADTAADIALFGRMLADNPSFNREAAAQVAHAITTHKVSIEDDYYTAVDDLKTSSEDAGAGFLGEAGFGSGVFYLYLCINRDLLKTNLGEEDDGTLAAATLGALTRAAATVAPSGKQNSFAAHARAHYILAEKGNQQPRTLAGAFAQPVTGTDIVGASIAQLKTFRDQLENAYGPGSDAQAELVLGGGGTLEEIVTFAQKD
>NC_019396.1|WP_015072149.1|95259_95868_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MRLDKETTETFVTWWRDLYPTNPDQERGGQRAISARLRRCGSVWDIMMEPAFASLVRQFPTVPSPDELPALALTMGVLAHVRTETPTPKSPDGQKAFRNAVAREIGPTDFGGSPNEVAASARFKPNRLEKLLETRDPEECLTAFRRLVRLANAPLNIRDLAQSLLRWPAEDAAADRIRTRWVHDYWGIGNRNPLFALPADAL
>NC_019396.1|WP_015072148.1|93641_95270_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MFDLMKTSWIPIRRRSGKKEIIRPSQIVENIETDPVIDFDWPRVDFQIASIEFLIGLLATAFPPATERKWRTLWRTPPTPEDLEAAFEPIRKAFDLDGPGPRFLQDFEPLSNGSEPIERLLFEAPGDQTVKKNMDLLNHRNRVQRMGRPAAAMALYTMQSWAPSGGKGNRTGLRGGGPLITFVSPSDRDTLWHRCWANVPVGTPPSEADLPKVFPWLTPTLTSEKNLEILPDLNAHPLQAWWGMPRRMRLTFEEQPNARCDITDEPDDIQATGVTQRPYGCNYNLWAPRHPLTPTYRPGKDKELLFQHPQPGGIRYRHWLGLVVPTDTSFEAPAIRTWRNDRQPDLDDGETPRPMDRFFAGGADFDNMKLRSFAESHFPLPRAAMAKDQHLADDMARKLVQASTLVADALRSTVRAALFSAGATVKLDASLFTCLREEFWNRTEPTFFGHLTRYSQNPTTTQDQTCHDWLADLRRVALDLFDEYAPATPDTDIQECVQIGNGRRWLLSTLYGHSKDGKQLFEFLKQPLPPKAPKKNGTNHAS
>NC_019396.1|WP_144032630.1|90294_93180_+|CRISPR-associated-helicase-Cas3'
MRHKATSSSFRTRFATHTPSETDPGRANRNKPAKRVTASTALEQWEKTEFPDLASQETIPSDELGWEHNGMDLTDLAQFWAKTDTQAAAECPMHPVVAHSLDVAAVAMSLPETMLPQIDNDPIDRRLLGFLASLHDIGKLGATFQFLRPDLWPTALGATPAALPPGPRHDAAGLQILGQLSTHPVLKILFPDWSLSEKLRVLAGVAGHHGKPISRAYQRPANLTSLDENTLNAARIFLDVMASLFQPPSFPEDFSEDAMDALAWRLAECLPVADWIGSNRTWFPYATPHTLTDPADYFWNKALPQAQKAIFQAGLGPVRTRPFQSAKDLLPHLETQALSPLQRWAETTSLPDGPALIVIEEMTGSGKTEAALILSHRLIARGHANGVFLALPTMATANAMFDRVAAAYGKMFHPADRPSLALAHGKARLSERFTQTILSEKSLSSFAGIRKQPGESACMEWLASENRRALLAQVGVGTIDQALLAVLPVRYTTIRRQGLTGKILCIDEAHTFDAYMNEEMKELLTLHASRGGSVILLSATLSHALRTALVNAFRKGLNLPATTLQDTHYPLTTLVSGTDAPVETPCEPRPGLGRTVRLNRLSDVGEAETRVIELAETGSAIAWIRNTVDEAIASAESLRAKGLKVQLFHARFAMVDRLEIEQDILRKFGKHSSPDQRAGVLVSSQILEQSLDLDFDSVITDLAPADLLIQRAGRLWRHHREDRPVDYPQLDILSPSPVSDPDANWIRRVLPGTAAVYRDPSLLWRTARALFARNVLRTPEDVRSIIEEVADTTSPGSVPAALEKEMLTTQGKNLSAQGLGRQTVLKTGEPYDPGTGQWDTDLQARTRLETDPTVIVRLALLKDGVIHPYAEDVDPSQAWALSEIRVARRRLKSCPPPEGLQTAIETIRASWSRWERDAVEDILVLVLFESVDGGFEGRGLDKDDNALMLQYHKATGLMFPA
>NC_019396.1|WP_100225146.1|89762_90311_-|Smr/MutS-family-protein
MALWRMVVRDIAPIHPAQAKPQPPPVPKKAKEDLGLKRSAPAVVMPPERDLSFRAMLARPTVRRTRPQDLRVGVRSPGLDDTSWKRLSRGDLKVDAKLDLHGYIVQDAFERLIEFMHRAKARNWRCVEVVTGLGSGATSGLIRRELPLWLQRSDIRPMVLAVVHPHSANHGSVRILLRTKRR
>NC_019396.1|WP_015072144.1|88667_89759_+|hypothetical-protein
MTVPSPTRRDCLKGLALLGAGSALPSLPAHAADIPDAHLLLGGTMTSIQGQFGELAAGVISHTLGLDAPLEITPDIGQDGVRAANLFDANSAPDGSTALIAPGSALLASLTGDPRVHYDFTRWTPLLTAHTTTVVIARAELHKTLRSRLKGFFHDHPVRLAVSRPTGTELDALLGLTLLGLRPIPVSGFARTEEALDALVNNQVDAVQLLPYTLGVPVEDVLARLPPDTVPIYHTGDLSDTSADSIPNFLEAYQQARHRPPEGALYRAWQAVSASTYTALTVALPMLTPPDLVKSWQKACWDAAVDPTVRHWAEKHHFMLAAGANAAPFLSRATPDIGAILALRRWIAMNTPRWRIGQETRPI
>NC_019396.1|WP_015072155.1|100197_100404_+|hypothetical-protein
MSKLSKEERDSLRDSEFGLPEKRAYPVDTKARARNAKARATQELERGLLTPEERDEIDRAADRKLNED
>NC_019396.1|WP_015072156.1|100463_101924_-|cytochrome-c-peroxidase
MRRSTITKGIAGLVALGVVAWGGTVTYLEHFDHAGAPKLPASSPTRHDPVAMTAFAAFQEVRCDYCHTRNADLPFYFKLPLANQIMNRDLEQGQRHFEFAPIIEAFQQGKPPSVEQLSRIEEVIVQNRMPPAAYLTMHPHAHLNEKQRADILRWVRDQRERYYASTDVAPQFRGEVIQPIPETITVDWKKAELGRTLFFDKQLSGNGQLNCASCHGLDKAGVDNQTTATGINGQTGPINVPTVYNSVFNIGQFWNGRAKDLAEQAAGPVMNPLEMGSHDWPAVADRVRAEPGYTDQFTAVYGSDEITKNTVTDAIAEYEKTLITPDSRFDLYLKGKADAITAQEKRGYERFKTIGCSGCHSGVAVGGDAYEILGLEGPYFEDRHSKLTAADDGRFSFTNNPSDRERFKVPNLRNVELTGPWFHDGSAKTLDAAVRAMARYETPDHDITDQDVADIVAFLKTLTGKYQGIPLKDVPADAPLRAAQAH
>NC_019396.1|WP_007282384.1|102020_102851_-|site-specific-DNA-methyltransferase
MIRSRRETLGAHTMIRGDCTTVLRRMPSQSVDIVVTSPPYNLGIEYRTYQDQLPEDAYLDWMEDVCASVKRIMKDDGSFFLNIAGSSSQPWLPFELMSRLRKLFVLQNHITWIKSISVGEITYGHFKPLNSPRFVNRNHEHIFHLTKKGDVKVARLDAGVPFTDKSNISRRQHEMDRRCRGDTWFIPYETVRSRKEKFSHPGTFPIALPEACIRLHGVKPGGVLLDPFMGVGTSLIAAERKGLSGIGVEKDTRYVNIARKRLRAAIGMKEEDWVDE
>NC_019396.1|WP_015072157.1|102847_103993_-|murein-transglycosylase-A
MRKLLTLTALALVAGCATQNDKSSSLSLTATGFDALTGWEREDFSSLLPVLRQNCHRLTQLPPETPLGGAETLPYGREAGDWSAACAAIETATDTRIYLQTWFQPYVVDARAFYSGYFEPQIEASLTRGGPYQTPVYGRPKDLVRTKATNGQMVTGRWENGQFKPYYDRAQIDAGVLNGQGLEIAWLKSPVDLFFLQIQGSGRLILPDGSQIRVGYDGKNGLPYVPLGRVLVQENELASSAVSMDSIKGWLETHPDRMMAMMERNPNYVFFRRDDGSLAQGATGAFGVPLTAGRSVAIDRSVVPFATPLWVETKLPDAKGQPAPWQHLVFAQDIGTDIKGAGRADLFTGWGAFAQYVAGNLHEGGRMVILLPRPPADSSAP
>NC_019396.1|WP_015072158.1|104008_104764_-|Tim44-domain-containing-protein
MSSDDIHLPSALIGHSGHEFPWDIVVLAVLAIALGFRLYRVLGRRIGMQGVRQDRPPVFTGPGQAPARQTPPPLPVASAQGNAEPAPQIEYDIPAPATRVGTILGQMTQLDGGFTPQGFLKDAETIFRQVVPAFAAGDRAALSGLMTPETEEAFLAAIDARTEAGETQRSDLRGIESMAILDAMLVSGDGNTQTGRIEVRIVSRQVNMLTDRQGEPVQGTDAVTEFHDLWLFERQFGVSGTQWRLAASRPA
>NC_019396.1|WP_016737722.1|104944_105469_+|protein-export-chaperone-SecB
MSENINDNTTQNMEGAPPQMPLAVNLQYTKDLSFEVPAGASIFATLRAAPQISVNIDVQANRLEEEQPVYEVALAVRAEAAEPPAEEGGKAGRTVFIAELTYAAIVTLGNAPQELVEPILLVEVPRLIFPYVRSIISDVTRDGGFPPVVLQPIDFVALWQAKRAQQFPEPAGEA
>NC_019396.1|WP_015072159.1|105477_106143_-|uroporphyrinogen-III-synthase
MRRRAVLVTRPEPGLTVTLADVRRLGWNAVSCPMLEIRTYAPITVRDCEAIAITSANALASLEDWPRDQRIVAVGSSTADRARSMGFRRVEAADGDARSLAAYCRSHDLTGPSLLLACGEGYGLDLAEELNASRVSVYGVTKRALLMDAARDALLRHEVEAVVFYSGKTADAFMEALESQGLESLSGVRALCLSEAIAARLTRKDWRAVEWPDPLGRLGPY
>NC_019396.1|WP_015072160.1|106145_107219_-|hydroxymethylbilane-synthase
MNELKLRAMNASVLSSDALQKVAAEAVRRSHAASPSGQRKLPLRVGSRASPLALWQTRTFLTRLTRFCPVLRDMGAFQEHQISTEGDRNLSQRLAEIGGKGLFAKEIHEALVAGRIDFAVHSLKDLETNLPPGLVLACTLKREDARDAIILRDRTTKVDPADPYASLPEGALIGCASVRRQAQMLNRRPDLRFGLLRGNVQTRLDKLQAGACDATLLALAGLRRLGMEDRVDIVLEPDQMLPAAGQGIVGVTVRESDTELRELLSAIEDPEARAVSTAERALLAELDGSCRTPIGGYARIENGVLKLTGMIASEDGTFLLRREISGAPLEAARMGRELAEELRRDTPAAIFAEMTRA
>NC_019396.1|WP_015072161.1|107253_108327_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MHGMSDPAALRPLLAIETSCDDTACAILAHDGTILAEGVLSQNDHAILGGVVPEIAARAHLDALPALVQSVLAKASLTLADIDTFAGTTGPGLIGGLIVGSSYAKGLALALGRPFIAVNHIEGHVLTARLPSLEANLQFPFLTMLVSGGHCQCISVKKTGQYIRLGGTIDDAAGEAFDKVAKMLGLGWPGGPALEKLAAEGRDDAFALPRPLKGREGCDFSFSGLKTAVSRLIEPQGSGALPRQFAADVAASFQRAVADVMADRAEHALAMAPHSTALVVAGGVAANRTLRSALEAVAERHDIPFIAPPLRLCTDNAVMIGWAALERLHAGEQPHEIDVAARPRWPLSERQPAAALS
>NC_019396.1|WP_015072162.1|108351_109176_+|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHAYHAGNFADCVKHAILLVLLKALARKPAGFCVLDTHAGCGQYDLSSEEAQKTGEWKTGIGLLEESEDPALQDYLAAVRDLGLYPGSPAFTRHALRPQDELIACELHPEDVRPLRRLFRDDPQVSIHHRNGYEALRALLPPKHLKRGLVLIDPPFEKLDDFQQCAQAVSLIRNRFRAGIVAVWYPIKHRTPVHAFYNALTDAGIRDIIACEFLLRPALDPSRLNGCGMLIVNAPYGFEEEARVILDAMKTGLATEDREDMQVHIERLAEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP043044	Gluconobacter thailandicus strain HD924 plasmid unnamed1, complete sequence	96863-96894	2	0.938
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	324162-324193	7	0.781
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	638599-638630	7	0.781
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	66833-66864	7	0.781
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1027262-1027293	7	0.781
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	381891-381922	7	0.781
NC_019396_2	2.1\|99881\|32\|NC_019396\|PILER-CR,CRT	99881-99912	32	NC_048047	Caulobacter phage CcrBL9, complete genome	207713-207744	7	0.781
NC_019396_2	2.4\|99882\|31\|NC_019396\|CRISPRCasFinder	99882-99912	31	MH588547	Caulobacter phage CcrSC, complete genome	207773-207803	7	0.774
NC_019396_2	2.4\|99882\|31\|NC_019396\|CRISPRCasFinder	99882-99912	31	NC_048047	Caulobacter phage CcrBL9, complete genome	207714-207744	7	0.774
NC_019396_1	1.2\|25649\|32\|NC_019396\|PILER-CR,CRISPRCasFinder,CRT	25649-25680	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1287421-1287452	8	0.75
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	13612-13643	8	0.75
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	13440-13471	8	0.75
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	13613-13644	8	0.75
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	281989-282020	8	0.75
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	287519-287550	8	0.75
NC_019396_1	1.6\|25893\|32\|NC_019396\|CRISPRCasFinder,CRT	25893-25924	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	250465-250496	8	0.75
NC_019396_2	2.1\|99881\|32\|NC_019396\|PILER-CR,CRT	99881-99912	32	MH588547	Caulobacter phage CcrSC, complete genome	207772-207803	8	0.75
NC_019396_2	2.7\|100065\|31\|NC_019396\|CRISPRCasFinder	100065-100095	31	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	24632-24662	8	0.742
NC_019396_1	1.5\|25832\|32\|NC_019396\|PILER-CR,CRISPRCasFinder,CRT	25832-25863	32	NC_014308	Ralstonia solanacearum PSI07 plasmid pRSI13, complete genome	4242-4273	9	0.719
NC_019396_2	2.6\|100004\|31\|NC_019396\|CRISPRCasFinder	100004-100034	31	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	715974-716004	9	0.71
NC_019396_2	2.8\|100064\|32\|NC_019396\|CRT	100064-100095	32	NZ_CP034186	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence	24631-24662	9	0.719

1. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP043044 (Gluconobacter thailandicus strain HD924 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
gacggcgttttccagaagcacgcgcgcatcat	Protospacer
******.****.********************

2. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.781

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatctt	Protospacer
  **   **************** ****** *

3. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatctt	Protospacer
  **   **************** ****** *

4. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.781

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatcct	Protospacer
  **   **************** ****** *

5. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.781

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatcct	Protospacer
  **   **************** ****** *

6. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 7, identity: 0.781

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgttttttcagaagcacgctcgcatctt	Protospacer
  **   **************** ****** *

7. spacer 2.1|99881|32|NC_019396|PILER-CR,CRT matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 7, identity: 0.781

cacttccacggcagcaacctgcgcaacctctt	CRISPR spacer
caagtcaacgccagcaacctgcgcaacgccct	Protospacer
**  ** *** **************** .*.*

8. spacer 2.4|99882|31|NC_019396|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 7, identity: 0.774

acttccacggcagcaacctgcgcaacctctt	CRISPR spacer
aagtcaacgccagcaacctgcgcaacgccct	Protospacer
*  ** *** **************** .*.*

9. spacer 2.4|99882|31|NC_019396|CRISPRCasFinder matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 7, identity: 0.774

acttccacggcagcaacctgcgcaacctctt	CRISPR spacer
aagtcaacgccagcaacctgcgcaacgccct	Protospacer
*  ** *** **************** .*.*

10. spacer 1.2|25649|32|NC_019396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

ccatttgcgcggccgtcaccaaatcccgtgaa	CRISPR spacer
agctcggcgcggccgtcgctaaatcccgtgca	Protospacer
   *. ***********.*.********** *

11. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 8, identity: 0.75

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatccg	Protospacer
  **   **************** ******

12. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 8, identity: 0.75

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatccg	Protospacer
  **   **************** ******

13. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 8, identity: 0.75

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgctttttcagaagcacgctcgcatccg	Protospacer
  **   **************** ******

14. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 8, identity: 0.75

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgttttttcagaaggacgctcgcatctt	Protospacer
  **   *********** **** ****** *

15. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 8, identity: 0.75

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgttttttcagaaggacgctcgcatctt	Protospacer
  **   *********** **** ****** *

16. spacer 1.6|25893|32|NC_019396|CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gacggcatttttcagaagcacgcgcgcatcat	CRISPR spacer
ctcgcgttttttcagaaggacgctcgcatcct	Protospacer
  **   *********** **** ****** *

17. spacer 2.1|99881|32|NC_019396|PILER-CR,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 8, identity: 0.75

cacttccacggcagcaacctgcgcaacctctt	CRISPR spacer
gaagtcaacgccagcaacctgcgcaacgccct	Protospacer
 *  ** *** **************** .*.*

18. spacer 2.7|100065|31|NC_019396|CRISPRCasFinder matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

gcggcccgaacgtgttcaccacgtcctggat	CRISPR spacer
actgcacgaacttgttcaccacgtccagtcg	Protospacer
.* ** ***** ************** *

19. spacer 1.5|25832|32|NC_019396|PILER-CR,CRISPRCasFinder,CRT matches to NC_014308 (Ralstonia solanacearum PSI07 plasmid pRSI13, complete genome) position: , mismatch: 9, identity: 0.719

acgccggcagccgtgtagccggtcagagcaat	CRISPR spacer
tcgccggcaggcgtgtagccggccaggttgtc	Protospacer
 ********* ***********.***. .. .

20. spacer 2.6|100004|31|NC_019396|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.71

cgtatc-gctacggtacaggtttccgtccttg	CRISPR spacer
-acgccagctacggtacgggtttccgtcccaa	Protospacer
 ....* **********.***********. .

21. spacer 2.8|100064|32|NC_019396|CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ggcggcccgaacgtgttcaccacgtcctggat	CRISPR spacer
aactgcacgaacttgttcaccacgtccagtcg	Protospacer
..* ** ***** ************** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

653969 : 684204

uncultured_Mediterranean_phage(25.0%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007283214.1\|653969_654281_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.8e-14	47.6
WP_015072574.1\|654406_656716_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.7e-178	44.4
WP_015072575.1\|656765_657230_-	DUF3465 domain-containing protein	NA	NA	NA	NA
WP_015072576.1\|657303_658323_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_186004348.1\|658440_659829_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_015072578.1\|659961_661614_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_015072579.1\|661646_662573_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_015072580.1\|662572_663334_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_015072581.1\|663350_664208_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_015072582.1\|664210_665359_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_015072583.1\|665368_666136_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA
WP_015072584.1\|666132_667275_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_015072585.1\|667435_668695_-	glycerate kinase	NA	NA	NA	NA
WP_015072586.1\|668739_670311_-	acyl CoA:acetate/3-ketoacid CoA transferase	NA	NA	NA	NA
WP_015072587.1\|670399_671992_-	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0SI18	Klosneuvirus	8.8e-57	31.1
WP_029495794.1\|671993_673490_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_007283197.1\|673959_674613_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_144032616.1\|674649_675407_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_186004347.1\|675669_676881_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA
WP_015072590.1\|677089_677524_-	hypothetical protein	NA	NA	NA	NA
WP_015072591.1\|678045_679413_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.0e-114	49.4
WP_015072593.1\|680687_681893_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_143829254.1\|684015_684204_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1295593 : 1307469

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015073039.1\|1295593_1298587_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.2
WP_016737891.1\|1298715_1299297_+	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.6e-37	59.2
WP_015073041.1\|1299359_1299827_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015073042.1\|1299823_1300621_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015073043.1\|1300676_1301468_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015073044.1\|1301541_1304382_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.4e-96	32.2
WP_015073045.1\|1304374_1304893_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	9.2e-24	38.8
WP_007281791.1\|1304924_1305410_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	6.2e-38	56.3
WP_015073046.1\|1305442_1305823_-	hypothetical protein	NA	NA	NA	NA
WP_015073047.1\|1306158_1307469_+	AAA family ATPase	A0A219YBX8	Aeromonas_phage	4.0e-31	30.2

DBSCAN-SWA_3

2190791 : 2247412

Catovirus(40.0%)

transposase,integrase

attL 2185632:2185691|attR 2255688:2255860

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2185632:2185691	attL	NA	NA	NA	NA
WP_015073692.1\|2190791_2192168_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_015073693.1\|2192398_2192740_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015073694.1\|2192736_2193033_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080600648.1\|2194231_2194573_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_015073698.1\|2195246_2197346_-	TonB-dependent receptor	NA	NA	NA	NA
WP_015073700.1\|2198227_2201965_-	glycoside hydrolase family 99-like domain-containing protein	A0A1V0SAH6	Catovirus	3.7e-05	33.3
WP_015073701.1\|2202096_2203290_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_007284204.1\|2203289_2203889_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_015073704.1\|2204347_2205655_+	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	5.0e-50	32.8
WP_015073705.1\|2205786_2206452_+	TIGR00266 family protein	NA	NA	NA	NA
WP_015073706.1\|2206701_2207994_+\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	1.4e-81	41.0
WP_041240822.1\|2208516_2208723_+	hypothetical protein	NA	NA	NA	NA
WP_015073708.1\|2208719_2209310_+	hypothetical protein	NA	NA	NA	NA
WP_015073709.1\|2209377_2210025_+	hypothetical protein	NA	NA	NA	NA
WP_015073710.1\|2210021_2210669_+	hypothetical protein	NA	NA	NA	NA
WP_015073711.1\|2210805_2211204_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_015073712.1\|2211292_2211589_-	hypothetical protein	NA	NA	NA	NA
WP_010504030.1\|2211595_2211820_-	hypothetical protein	NA	NA	NA	NA
WP_016738402.1\|2211985_2212624_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_007284186.1\|2212815_2213058_+	hypothetical protein	NA	NA	NA	NA
WP_034881975.1\|2213148_2213997_+	FkbM family methyltransferase	A0A222Z098	Streptomyces_phage	6.2e-09	31.3
WP_015073716.1\|2214365_2214707_+	hypothetical protein	NA	NA	NA	NA
WP_015073717.1\|2214710_2215979_+	hypothetical protein	NA	NA	NA	NA
WP_015073718.1\|2215975_2217061_+	hypothetical protein	NA	NA	NA	NA
WP_015073719.1\|2217057_2218101_+	hypothetical protein	NA	NA	NA	NA
WP_015073720.1\|2218097_2218934_+	hypothetical protein	NA	NA	NA	NA
WP_144032625.1\|2219053_2220931_+	hypothetical protein	NA	NA	NA	NA
WP_015073723.1\|2221738_2221867_-	phenylacetaldoxime dehydratase family protein	NA	NA	NA	NA
WP_015073724.1\|2221854_2222430_-	phenylacetaldoxime dehydratase family protein	NA	NA	NA	NA
WP_015073725.1\|2222559_2223588_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_015073726.1\|2223703_2224678_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015073727.1\|2224874_2225780_+	transporter	NA	NA	NA	NA
WP_015073694.1\|2226079_2226376_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015073728.1\|2226372_2226714_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015073729.1\|2227145_2227937_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_015073730.1\|2228038_2228956_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015073731.1\|2229166_2230597_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_015073732.1\|2230593_2231772_-	HlyD family secretion protein	NA	NA	NA	NA
WP_015073733.1\|2231821_2233375_-	MFS transporter	NA	NA	NA	NA
WP_144032626.1\|2234452_2235216_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.4e-12	31.6
WP_015073738.1\|2235453_2236659_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015073739.1\|2236811_2237894_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015073740.1\|2237984_2238236_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007284633.1\|2238263_2239130_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_029495842.1\|2239358_2241614_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_016738389.1\|2241669_2242110_+	pseudoazurin	NA	NA	NA	NA
WP_016738388.1\|2242192_2242519_+	hypothetical protein	NA	NA	NA	NA
WP_016738387.1\|2242747_2243896_-	class C beta-lactamase	NA	NA	NA	NA
WP_015073748.1\|2246206_2247412_-\|transposase	IS701 family transposase	NA	NA	NA	NA
2255688:2255860	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2693237 : 2702024

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015074090.1\|2693237_2695442_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.5e-160	42.0
WP_015074091.1\|2695438_2696140_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015074092.1\|2696136_2696526_-	hypothetical protein	NA	NA	NA	NA
WP_007281914.1\|2696522_2696765_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_015074093.1\|2696761_2697526_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	6.5e-42	42.6
WP_015074094.1\|2697669_2699001_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	5.1e-18	34.4
WP_016738053.1\|2699082_2699694_+	YjbE family putative metal transport protein	A0A0S4KZH7	Pseudomonas_phage	2.3e-13	35.2
WP_016738052.1\|2699674_2701552_+	transglycosylase SLT domain-containing protein	I1VXB7	Halocynthia_phage	1.0e-08	33.3
WP_015074097.1\|2701538_2702024_+	CinA family protein	B5TK85	Pseudomonas_phage	7.3e-23	44.6

DBSCAN-SWA_5

3170384 : 3213153

Bacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015074447.1\|3170384_3171332_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_015074448.1\|3171473_3172106_-	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_015074449.1\|3172309_3174697_+	TonB-dependent receptor	NA	NA	NA	NA
WP_015074450.1\|3174701_3175688_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015074451.1\|3175671_3177159_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015074452.1\|3177155_3178160_+	membrane dipeptidase	NA	NA	NA	NA
WP_015074453.1\|3178141_3179230_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_015074454.1\|3179222_3180329_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.9e-24	31.6
WP_015074455.1\|3180325_3181177_+	ABC transporter permease	NA	NA	NA	NA
WP_015074456.1\|3181197_3181971_+	ABC transporter permease	NA	NA	NA	NA
WP_015074457.1\|3181975_3183466_+	carboxylesterase/lipase family protein	A0A0B5J865	Pandoravirus	2.3e-14	39.2
WP_144032629.1\|3184163_3184920_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015074462.1\|3186379_3187459_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_016738271.1\|3187747_3188410_-	hypothetical protein	NA	NA	NA	NA
WP_015074464.1\|3188449_3189451_-	sterol desaturase family protein	NA	NA	NA	NA
WP_015074465.1\|3189657_3193257_-	urea carboxylase	NA	NA	NA	NA
WP_015074467.1\|3193860_3195381_+	amino acid permease	NA	NA	NA	NA
WP_015074468.1\|3195430_3196168_+	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_015074469.1\|3196180_3196816_+	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_015074470.1\|3196843_3198670_+	allophanate hydrolase	NA	NA	NA	NA
WP_186004352.1\|3198630_3199863_+	response regulator	NA	NA	NA	NA
WP_015074472.1\|3199869_3201540_+	sulfotransferase family protein	NA	NA	NA	NA
WP_015074473.1\|3201619_3202036_+	DUF1636 domain-containing protein	NA	NA	NA	NA
WP_015074474.1\|3202048_3203671_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_143829257.1\|3203739_3204192_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_015074476.1\|3204423_3206934_+	TonB-dependent receptor	NA	NA	NA	NA
WP_015074477.1\|3207021_3207951_+	hypothetical protein	NA	NA	NA	NA
WP_015074478.1\|3208085_3209165_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015072662.1\|3209420_3210257_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015074481.1\|3212205_3213153_+\|transposase	IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_019397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4971 : 53387

Paenibacillus_phage(20.0%)

transposase,integrase

attL 9629:9644|attR 41093:41108

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144032633.1\|4971_5728_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.8e-10	38.8
WP_015074838.1\|5743_5917_+	hypothetical protein	NA	NA	NA	NA
WP_015074839.1\|5913_7917_+	FUSC family protein	NA	NA	NA	NA
WP_015074840.1\|7918_8218_+	EF-hand domain-containing protein	NA	NA	NA	NA
WP_015074842.1\|8917_9514_-\|transposase	transposase	NA	NA	NA	NA
9629:9644	attL	NA	NA	NA	NA
WP_016738651.1\|12558_13527_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_029495917.1\|13625_14549_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016738649.1\|14636_15092_-	hypothetical protein	A0A142UM78	Mycobacterium_phage	1.5e-14	42.9
WP_015074850.1\|15207_15744_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA
WP_015074851.1\|15895_16894_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_015074852.1\|16897_17683_+	hypothetical protein	NA	NA	NA	NA
WP_015074853.1\|17675_18434_+	segregation/condensation protein A	NA	NA	NA	NA
WP_016738647.1\|18996_19920_+	plasmid replication initiator	NA	NA	NA	NA
WP_015074855.1\|20011_20332_-	hypothetical protein	NA	NA	NA	NA
WP_015074857.1\|20693_21716_-	alpha/beta hydrolase	J3IZC7	Acanthamoeba_polyphaga_lentillevirus	9.0e-55	39.6
WP_015074858.1\|21854_22349_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_003618986.1\|22768_23596_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_003618982.1\|23620_24022_-	VOC family protein	NA	NA	NA	NA
WP_016738644.1\|24081_25191_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	5.6e-10	24.7
WP_015074861.1\|25232_25508_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_015074864.1\|25893_26781_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_016737605.1\|26833_27166_-	hypothetical protein	NA	NA	NA	NA
WP_015074865.1\|27281_28202_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016737604.1\|28233_28980_-	SDR family oxidoreductase	A0A2P0VP75	Tetraselmis_virus	1.1e-06	27.9
WP_015074867.1\|29129_30044_+	helix-turn-helix transcriptional regulator	A0A291LAM3	Bordetella_phage	2.5e-08	27.3
WP_015074868.1\|30063_30546_-	DUF2938 family protein	NA	NA	NA	NA
WP_080578982.1\|30649_31102_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_041240858.1\|31178_32138_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_015074871.1\|32262_33129_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_015074872.1\|33244_33607_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015074873.1\|33993_34401_-	VOC family protein	NA	NA	NA	NA
WP_015074874.1\|34397_35024_-	glutathione S-transferase	NA	NA	NA	NA
WP_015074875.1\|35139_36048_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_186004321.1\|36411_37674_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015074878.1\|38646_39165_+	hypothetical protein	NA	NA	NA	NA
WP_100225173.1\|39190_39947_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	5.0e-10	37.2
WP_015074881.1\|40005_40173_+	hypothetical protein	NA	NA	NA	NA
WP_041240859.1\|43494_43728_-	hypothetical protein	NA	NA	NA	NA
41093:41108	attR	NA	NA	NA	NA
WP_080600659.1\|43727_45233_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_015074886.1\|45141_45933_-	hypothetical protein	NA	NA	NA	NA
WP_015074887.1\|46115_46430_-	hypothetical protein	NA	NA	NA	NA
WP_029495913.1\|46426_47116_-	ParA family protein	A0A0A8IL09	Aurantimonas_phage	3.4e-58	53.8
WP_015074889.1\|47278_47608_+	hypothetical protein	NA	NA	NA	NA
WP_015074890.1\|47718_48048_+	hypothetical protein	NA	NA	NA	NA
WP_015074890.1\|48158_48488_+	hypothetical protein	NA	NA	NA	NA
WP_015074890.1\|48598_48928_+	hypothetical protein	NA	NA	NA	NA
WP_041240861.1\|49327_49705_+	hypothetical protein	NA	NA	NA	NA
WP_015074895.1\|50777_51464_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_015074896.1\|51460_51823_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-25	51.9
WP_041240863.1\|51875_53387_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-103	42.6

DBSCAN-SWA_2

138618 : 158989

Shigella_phage(33.33%)

transposase,integrase

attL 129156:129169|attR 144020:144033

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
129156:129169	attL	NA	NA	NA	NA
WP_080578973.1\|138618_139443_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_186004321.1\|139550_140813_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015075000.1\|141857_142847_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_015075002.1\|143117_144221_+	Fic family protein	NA	NA	NA	NA
144020:144033	attR	NA	NA	NA	NA
WP_015075003.1\|144272_145643_+	hypothetical protein	NA	NA	NA	NA
WP_016738512.1\|145756_147073_+	hypothetical protein	NA	NA	NA	NA
WP_015075006.1\|147266_147527_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_015075008.1\|148049_149129_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015075009.1\|149276_149804_+	hypothetical protein	NA	NA	NA	NA
WP_016738508.1\|149796_151101_+	hypothetical protein	NA	NA	NA	NA
WP_015075013.1\|151720_152191_+	hypothetical protein	NA	NA	NA	NA
WP_100225176.1\|152212_153399_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.4e-29	32.5
WP_015075016.1\|153512_154391_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_015075017.1\|154405_155044_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015075018.1\|155174_155450_-	hypothetical protein	NA	NA	NA	NA
WP_015075020.1\|156064_156835_-	SDR family NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.1e-10	31.1
WP_015075021.1\|156902_157922_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_029495881.1\|157911_158415_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016738505.1\|158665_158989_+\|transposase	transposase	B6ETC4	Enterobacteria_phage	1.0e-20	52.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019396

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_019397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection