CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019670	Pseudomonas sp. UW4, complete sequence	5 crisprs	DEDDh,csa3,WYL,PrimPol,DinG,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019670_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019670_1

305929-306032

Orphan

Consensus_repeat	Method
TGCGGTGTGAGCCTGGTGTAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019670_1

>merge|NC_019670|1|305929-306032|CRISPRCasFinder
TGCGGTGTGAGCCTGGTGTAAAGAAGGAACCCCTGACCTGCCTGTATCAAGGGCCCCAAAACGGCTGGGCTCGTCGCGGCTGCGGTGTGAGCCCGGTGTAAAGA

>NC_019670|1|1|305929-306032|CRISPRCasFinder
TGCGGTGTGAGCCTGGTGTAAAGA	AGGAACCCCTGACCTGCCTGTATCAAGGGCCCCAAAACGGCTGGGCTCGTCGCGGC
TGCGGTGTGAGCCCGGTGTAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019670.1\|WP_015093090.1\|311778_313233_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NC_019670.1\|WP_177325092.1\|300401_301811_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NC_019670.1\|WP_015093083.1\|304045_304300_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NC_019670.1\|WP_015093089.1\|309231_309747_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NC_019670.1\|WP_015093087.1\|306405_307842_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NC_019670.1\|WP_007970631.1\|313372_315193_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NC_019670.1\|WP_015093086.1\|305428_305869_+\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_007970630.1\|315412_315850_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NC_019670.1\|WP_015093093.1\|321912_323286_+\|DUF3999-domain-containing-protein	unknown	unknown	gnl\|CDD\|372507
NC_019670.1\|WP_015093091.1\|316105_318556_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NC_019670.1\|WP_007970634.1\|310043_311450_-\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NC_019670.1\|WP_015093085.1\|304974_305430_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
NC_019670.1\|WP_015093092.1\|318712_321916_+\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|227665
NC_019670.1\|WP_015093082.1\|303630_304044_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NC_019670.1\|WP_015093078.1\|298274_299051_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NC_019670.1\|WP_015093084.1\|304356_304842_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NC_019670.1\|WP_015093088.1\|307838_308924_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NC_019670.1\|WP_015093081.1\|301948_303478_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NC_019670.1\|WP_015093079.1\|299053_300370_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NC_019670.1\|WP_015093077.1\|297375_298131_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223904

Protein	Function_ID	Function_description	E-value
NC_019670.1\|WP_015093090.1\|311778_313233_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NC_019670.1\|WP_177325092.1\|300401_301811_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.70188e-106
NC_019670.1\|WP_015093083.1\|304045_304300_+\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	4.65226e-49
NC_019670.1\|WP_015093089.1\|309231_309747_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	7.69753e-09
NC_019670.1\|WP_015093087.1\|306405_307842_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NC_019670.1\|WP_007970631.1\|313372_315193_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NC_019670.1\|WP_007970630.1\|315412_315850_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	2.38395e-07
NC_019670.1\|WP_015093093.1\|321912_323286_+\|DUF3999-domain-containing-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.87917e-148
NC_019670.1\|WP_015093091.1\|316105_318556_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NC_019670.1\|WP_007970634.1\|310043_311450_-\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NC_019670.1\|WP_015093085.1\|304974_305430_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	3.27819e-88
NC_019670.1\|WP_015093092.1\|318712_321916_+\|DUF2339-domain-containing-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	2.08873e-104
NC_019670.1\|WP_015093082.1\|303630_304044_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.53552e-24
NC_019670.1\|WP_015093078.1\|298274_299051_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	3.98942e-90
NC_019670.1\|WP_015093084.1\|304356_304842_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.28207e-83
NC_019670.1\|WP_015093088.1\|307838_308924_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	2.53362e-164
NC_019670.1\|WP_015093081.1\|301948_303478_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NC_019670.1\|WP_015093079.1\|299053_300370_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.13652e-144
NC_019670.1\|WP_015093077.1\|297375_298131_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	4.82989e-26

>NC_019670.1|WP_015093086.1|305428_305869_+|hypothetical-protein
MHGSEGKDDAHSTPQADVRSKLFLRVMGSLAIVGMMIGLMIGRLTTPDPSQLQQVEVTGDGLVVWFNNEPKVHGEIVDGSVALLFGAEGQAQKGQLKLGGKDVNWRVRLSDGGLLLTLVAARPLLGEWAGSEVDDRWRLEIHLREQ
>NC_019670.1|WP_015093085.1|304974_305430_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPAEVLDALPPEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQNDFK
>NC_019670.1|WP_015093084.1|304356_304842_+|protein-export-chaperone-SecB
MTDQQNTAANEEETAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVALDLNTRQKALESDFHEVVLTLSVTVKNGDEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYARETLDSLVTRGSFPALMLAPVNFDALYAQELQRMQAAGETPTVQ
>NC_019670.1|WP_015093083.1|304045_304300_+|glutaredoxin-3
MSNVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAAMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLSA
>NC_019670.1|WP_015093082.1|303630_304044_+|rhodanese-like-domain-containing-protein
MVANLIQFATNHYILVGIFVVLLALLIAYQMQGGGRSLSTGELTGLVNKDAGVVIDIRPTKDFAAGHIVGALNIPQDKLIARVGELEKHKAKTIILVDAMGQTAGTHARELMKSGFTAAKLSGGISSWKADNLPLVK
>NC_019670.1|WP_015093081.1|301948_303478_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSDNPESNAIFAAKKPVLDRLWATVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKSIRDGEFFENPTICAAVDKAVAAGKAVHFMGLLSDGGVHSHQDHLVAMAELAFKRGAQNIYLHAFLDGRDTPPKSAQSSIELLDATFQALGKGRIASLIGRYYAMDRDNRWDRVSQAYNLIVDGQGEFNAATAQEGLQAAYERGESDEFVKATSIGEPVKVEDGDAVVFMNFRADRARELTRVFVEDNFSEFERARQPKLAGFVMLTQYAASIPAPSAFAAGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFEAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDETTGQAHTAHTTEPVPFIYVGKRDLKVREGGVLADVAPTMLKLLGLEQPAEMTGTSILV
>NC_019670.1|WP_177325092.1|300401_301811_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MEFSLSLVPVITQSEMGIFFAAHGGHTRPSLSLVPPAPMLRVLIALALTCLLQPAFADERADTQQQLDATRQDIAELKKLLGKLQEEKSGVQKELKGTETEMGKLEKQVDALQKELKKSEAELQRLDAEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPERFARTLTYYDYLSQARLEQLKSFNETLRQLSNVEKDIAMQQAQLLVQQSSLDTQRDELEKVRKERQQVLAKLNDDVKARDQKLAAREQDQADLSKVLKTIEETLARQAREAEEARQKALIAQQEAEKKRLREAQAQADASDDAPRKPVRSIPGAVVSSSGETFGGPFASTRGKLPWPVDGRLLARYGESRGDDARTKWDGVMIGASAGSTVHAVHGGRVVFADWLRGAGLLVILDHGNGFLSLYGHNQTLLKSAGDVVKAGESISTVGNSGGQDTPALYFAIRQQGHPSDPAQWCRAQG
>NC_019670.1|WP_015093079.1|299053_300370_-|S41-family-peptidase
MLHLSRLTSLALTIALVIGAPLAFAAQPAPAVAPAGTAATTKAPLPLDELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGFIKVVSPIDDTPASKAGIQAGDFIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGTPFDVTLSRAVIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKENGKKLNGIILDLRNNPGGVLQAAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVVMGTTSFGKGSVQTVLPLNNDRALKITTALYYTPNGRSIQAQGIVPDIEVRKAKITSEQDNDYFKEADLQGHLGNGNGGADKPTGSSKAKPMPQDDDYQLAQALSLLKGLSITSGR
>NC_019670.1|WP_015093078.1|298274_299051_-|divergent-polysaccharide-deacetylase-family-protein
MRLRYILGLLCCLAGVVHATPAPTTPQKAYLTLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHATEFAREAHRAGKIVILHMPMDPATGPFAWHPELPVDELEKRLNAAFKMVPYTSGINNHMGSRMTAQPMAMAWLMADLQRRHKFFVDSRTSARTVAAAEAQKIGLASVSRDVFLDDERTEAAIFSQLQAAISLAHKQGSAVMIGHPYPQTLAVLERELPKLKAQGIEWIDIRQMISVRGNRATAAHGKDGVYR
>NC_019670.1|WP_015093077.1|297375_298131_+|ABC-transporter-substrate-binding-protein
MLKRFLLVLASASLLFINGAHAKDSPDTDMVLLTENFPPYNMAKNGKNFAQDENIDGIATDIVREIFKRANITYSLTLRFPWERIYKLTLEKPGYGVFVMARLPDREKLFKWVGPIGPDDWIMLAKADSKITLETLNDARKYKIGAYKGDAIAETLAKQGLNPIVVLRDQDNAKKLVNGQIDLWATGDPAGRYLARQEGVNGLKTVLRFNSAELYLALNKDVPDETVAKLQAALDQMRKEGKVDEIMARYL
>NC_019670.1|WP_015093087.1|306405_307842_-|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVVPTLTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHVPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKNETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHIGDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPAFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDEGDEA
>NC_019670.1|WP_015093088.1|307838_308924_-|nitrogen-regulation-protein-NR(II)
MTISDALHRLLLDNLTTATILLDAELRLEYMNPAAEMLLAISGQRSHGQFISELFTESTEALNSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTMLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPEESLRDYTNVIIEEADRLRNLVDRMLGSNKLPSLALCNVHEVLERVCHLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRISLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGATST
>NC_019670.1|WP_015093089.1|309231_309747_-|DUF4124-domain-containing-protein
MGRGFLFILLLIALPAMAQIYKYTDANGATAYSNQPPDGVSVQPVHLPPLNSIERQTPGEAAPVAEATRNEQPQKPYEVLELTGLPNTEALRANNGTFTINVLIKPRLQGSHRMRLLLDGQPYGQPVNVPILQLVNIDRGEHRLAVQVIDGENVVQQSPTATFTLQRVHTR
>NC_019670.1|WP_007970634.1|310043_311450_-|glutamate--ammonia-ligase
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDDDFFEVGKMFDGSSIAGWKGIEASDMILMPDDSTAVLDPFTEEPTLILVCDIIEPSSMQGYDRDPRAIAKRAEEHLKATGIGDTVFAGPEPEFFIFDQVKFKSDISGSMFKIYSEQGSWMSDQDIEGGNKGHRPGVKGGYFPVPPFDHDHEIRTSMCNALEEMGLTVEVHHHEVATAGQNEIGVKFNTLVKKADETQTLKYVVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSIWKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARFPDPAANPYLCFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
>NC_019670.1|WP_015093090.1|311778_313233_+|tRNA-4-thiouridine(8)-synthase-ThiI
MKLIVKVFPEITIKSRPVRMRFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETRVSDPKALKEMGERLSCMPGVAHFLQIDEYPLGDFDDIVEKCKQHYGDALAGKIFSVRCKRAGKHPFSSIDIEKYVGSQLRRQCGAAGIDLKKPEIEVRIEVRDQRLFVIHSQHNGIGGYPLGALEQTLVLMSGGFDSTVAAYQIMRRGLMAHFCFFNLGGRAHELGVMEVAHFIWKKYGSSQRVLFVSVPFEEVLGEILGKVDNSHMGVVLKRMMLRASSRIADRLHIEALVTGEAISQVSSQTLPNLSVIDCVTDKLVLRPLIASHKQDIIDTANEIGTADFARHMPEYCGVISVNPKTAAKRYRVEHEEKEFDMAVLERALENAKLVPIDRVIDELGQDLQIEEVSEALAGQIVIDIRHPDAAEDDPLELAGIEVQTMPFYAVNARFKELDPTRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPS
>NC_019670.1|WP_007970631.1|313372_315193_+|translational-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLRQSGTLERNELNDERVMDSNDQEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGLRPIVCINKVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGLDHTEMAEDMTPLYQSIVDNVPAPKVDRDGPFQMQISALDYNSFLGVIGVGRIARGRVKPNTPVVAIGADGKKRNGRILKLMGHHGLHRVDVEEAAAGDIVCISGMDSLFISDTLCHPDTVEAMKPLTVDEPTVSMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVALRVEEGDSADKFKVSGRGELHLSVLIETMRREGFEMAVGRPEVIIRLVDGVKHEPFENVTIDLPEESQGKVMEEMGLRKGDLTNMVPDGKGRVRLEYNIPARGLIGFRNQFLTLTNGAGILTSIFDRYDVMKSGDMSGRQNGVLVSVETGKALTYSLETLQARGKLFVEHGQEIYNGQIVGLNSRDNDLGVNPTKGKKLDNMRASGKDETIALVPPVRFTLEQALEFIQDDELCEVTPKSIRLRKKILDESERTRAAKKAKA
>NC_019670.1|WP_007970630.1|315412_315850_-|YkgJ-family-cysteine-cluster-protein
MMKPNLIAAAEIDRLDTWAKYSAPMCGSCMSSCCTLPVEVKIKDLIRIGVVDEFELGDPPKNIAKRLQKEGLVERFNQKSGIFTLQRMSNNDCLYLDRKSRLCTIYDKRPDTCRNHPKIGPRPGYCAYKPKEVERERNSRSIERF
>NC_019670.1|WP_015093091.1|316105_318556_+|glycogen/starch/alpha-glucan-phosphorylase
MTQEPLVREAEVAAFRDAVLTKLTYAVGKDPDHAFDHDWFEAIALAARDHMVEHWMDHTRQIYRKGQKRVYYLSLEFLIGRLLFDSLSNLGLLDVAREALTELGVDLERIRLLEPDAALGNGGLGRLAACFLESMSTLGIAGHGYGIRYEHGLFRQAIVDGWQQEQTEHWLDFGNPWEFERPEVVYTIGFGGGVETLTDDTGKSRQVWSPAETVRAIAYDTPVVGWRGASVNTLRLWRARAMEDLHLERFNAGDHLGAVAEVARAESISRVLYPADSTEAGQELRLRQEYFFVAASLQDLLRRHRNMHTSVLTLGDHASIQLNDTHPSIAVAELMRQLVDVYDVAWDAAWQVTVDTLSYTNHTLLPEALETWPVGLMERMLPRHMQIIYLINAHHIDSLRAKGIHDFDVLRAVSLIEEDNGRRVRMGNLAFLGSHSVNGVSGLHTQLMRKTVFSELHKLYPERINNKTNGITFRRWLYQANPELTSMLVDALGPEVLDNPEERLLALEPFAEKNAFRKAFAEQRLHSKKALAYLIHERLGVAVNPAAMFDVQVKRIHEYKRQLLNLMHTVALYQAIRAEPEIDWVPRVKIFAGKAAASYHQAKLIIKLTNDIARVVNNDPTVRGLLKVVFLPNYNVSLAESIIPAADLSEQISTAGFEASGTSNMKFGLNGALTIGTLDGANVEMCDRIGAEHMFIFGLSAQQVEARKQNHEFSAVPDIAASHRLNDVLQAIRGGVFSPDDPSRYTGLIDSLVDYDRFLVCADFDSYWHAQMRVEAHWHDSKEWWRSAVLNTARMGWFSSDRTIREYATEIWKALE
>NC_019670.1|WP_015093092.1|318712_321916_+|DUF2339-domain-containing-protein
MQWMFMLIGLVLGWILDESFSDALLGALLGLGIGQALRLARMDSQAVEQQRLLEQAQVALQAVEQRLALLEASGVKTPQTGEPLVAPETFLDETPAVATELIWELPPELEPIQAAASEIRRPATDAWKPESTAREAQSPGSPRGPNLIDRAIGRARAWLFGGNTVLRVGVVLLFLGLAFLLRYATEGVVVPVELRYAGVAATALGLLGLGWWLRARNSSYALILQGAGIAVLYLTVFAAMRLHPLLEPSAGFGLLVAVTVCSAILAIAQDSLGLAAAAALGGFAAPILASTGTGSHVALFSYFTLLNAGIFAIAWFKAWRLLNVIGFTGTFGIGFAWGLRSYSPELLWSTEPFLILFFLMYLAIGLLFARRRLMEMGDTPADGSREALLRWSARKGDYVDGTLLFGPPLVGFGLQFVLVQHLEFAAAFSALALGIIYMGLARWLMAGRTLLLGETCLALGVIFASLAIPLGLDARWTTAAWAVEGAGIFWLGLRQQRHLGRAFALLLQLGAALAFLSELHDSESSLLGGVPLGALLLGVALLFSFYQLRKALPEQIRPWELKGLPVLACLGLAFLYLLAPLFFFSHGTVISWALAGALTLFVGLHLQSRTFVFTALAVQLLGGALFLTAGPQFSDGLQPLAHGGFWAPLLLGLAAMVGAWRLQIGHSFTALKGLSLLRLSQALLVWGAGWWALAWVIEVLHFAPQSMQATLLLGIAAVSVALWTVLALRLKWPSLGGLGTVLIPAAALVLLAAWHSRYHPAANFGWLAWAAVFVVHFMSLRRLAPMLPAPVLSVAHVLGCWLLMGVLALELRYALLVLSEQYNAWRWLGWAILPSLYLVLMAAPRAWPWPVSAYPREYRVYAAAPLALLMLGWFWLANIASEGNAEPLPYVPLINPLELGLLFALFGVYVWSRSAMPQLAVRKDYAAIATQGVAGASLFVFFTALVMRTAHHWSAVPFELDLLLESMRVQAGLSIVWTLMALSLMIGGHLRRRREVWLIGAALIGVVVAKLFFVELSNRGGLARIVSFIGVGVLLLVVGYFAPLPPKRAEAVSDSGKPVPESQGVSS
>NC_019670.1|WP_015093093.1|321912_323286_+|DUF3999-domain-containing-protein
MSQKLNLGWLGIVAMGVVLSAVAQEKPEDFTTQVPLSVTGEGPWYRLELPLSVQLNARQADLSDVRVFNAVGEAQAYALARESARSDETRTLTEVKWFALYNSVDATETAPSVRVQSSTNGTLVEVQPSSQLEAGEEELRGWLLDASAIKAPLQQLILDWTSERDGFQRFTIEASDDLQHWQSWGEGQVARLTFSDERVEQHEVNLPGQSARYLRLLWITPHSAPTLTSAQLQSANTRSLPLPLVWSQALAGSSVKAGEYTWQLPMGLNVERVQVELSQPNSLAPVSLAGRRDSSLPWQSLGSGLLYRLTQNGQDVVQNQLQLSGQIVQQLKLTVDERGGGLGDQAPTLKFAMRATQLVFLARGPGPYTLVVGNAAAKAANLPLSTLIPDYSPQKLATLGRALVDVGAVTTQPSAGATSAPVDTHWKKFGLWAVLLLCVVVLAAMAFSLLRKPSVKS

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Crispr_ID: NC_019670_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019670_2

2888440-2888532

Orphan

Consensus_repeat	Method
TCCCCTGTAGGAGCTGGCTTGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019670_2

>merge|NC_019670|2|2888440-2888532|CRISPRCasFinder
TCCCCTGTAGGAGCTGGCTTGCCAGTGATGGTCGTGAACGATAGCGCGTGTGAACCGGATAAACGCGGTCCCCTGTAGGAGCTGGCCTGCCAG

>NC_019670|2|2|2888440-2888532|CRISPRCasFinder
TCCCCTGTAGGAGCTGGCTTGCCAG	TGATGGTCGTGAACGATAGCGCGTGTGAACCGGATAAACGCGG
TCCCCTGTAGGAGCTGGCCTGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019670.1\|WP_015094985.1\|2886088_2887207_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NC_019670.1\|WP_015094995.1\|2899385_2900693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379259
NC_019670.1\|WP_083884563.1\|2891008_2891191_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015094988.1\|2888709_2888919_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015094993.1\|2895636_2896926_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274229
NC_019670.1\|WP_015094980.1\|2880429_2881536_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|379770
NC_019670.1\|WP_015094994.1\|2897822_2899148_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_019670.1\|WP_007970104.1\|2879274_2880426_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NC_019670.1\|WP_015094990.1\|2891464_2892445_+\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NC_019670.1\|WP_015094982.1\|2882692_2883784_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_019670.1\|WP_007970103.1\|2878287_2879061_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180295
NC_019670.1\|WP_015094986.1\|2887222_2887804_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|225200
NC_019670.1\|WP_007970062.1\|2897212_2897479_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015094992.1\|2894055_2895558_-\|sodium/proton-antiporter-NhaB	unknown	unknown	gnl\|CDD\|181942
NC_019670.1\|WP_015094989.1\|2889072_2890809_-\|phosphoethanolamine-transferase-CptA	unknown	unknown	gnl\|CDD\|333729
NC_019670.1\|WP_015094987.1\|2887921_2888413_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_019670.1\|WP_015094984.1\|2884877_2885930_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381306
NC_019670.1\|WP_015094981.1\|2881700_2882591_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_019670.1\|WP_015094991.1\|2892441_2893956_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237233
NC_019670.1\|WP_015094983.1\|2883801_2884761_+\|agmatinase	unknown	unknown	gnl\|CDD\|235011

Protein	Function_ID	Function_description	E-value
NC_019670.1\|WP_015094985.1\|2886088_2887207_+\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.24868e-136
NC_019670.1\|WP_015094995.1\|2899385_2900693_-\|hypothetical-protein	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	0.00017743
NC_019670.1\|WP_015094993.1\|2895636_2896926_-\|hypothetical-protein	gnl\|CDD\|274229	TIGR02608, hypothetical_protein, delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.	6.539e-05
NC_019670.1\|WP_015094980.1\|2880429_2881536_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|379770	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase. This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from pfam00378 in the structure of it's C-terminus.	9.62723e-168
NC_019670.1\|WP_015094994.1\|2897822_2899148_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.98438e-159
NC_019670.1\|WP_007970104.1\|2879274_2880426_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NC_019670.1\|WP_015094990.1\|2891464_2892445_+\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NC_019670.1\|WP_015094982.1\|2882692_2883784_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.44207e-148
NC_019670.1\|WP_007970103.1\|2878287_2879061_+\|enoyl-CoA-hydratase	gnl\|CDD\|180295	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.	4.55007e-155
NC_019670.1\|WP_015094986.1\|2887222_2887804_+\|DinB-family-protein	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	1.96822e-30
NC_019670.1\|WP_015094992.1\|2894055_2895558_-\|sodium/proton-antiporter-NhaB	gnl\|CDD\|181942	PRK09547, nhaB, sodium/proton antiporter NhaB.	0
NC_019670.1\|WP_015094983.1\|2883801_2884761_+\|agmatinase	gnl\|CDD\|235011	PRK02190, PRK02190, agmatinase; Provisional.	0
NC_019670.1\|WP_015094987.1\|2887921_2888413_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.94878e-15
NC_019670.1\|WP_015094984.1\|2884877_2885930_-\|aldo/keto-reductase	gnl\|CDD\|381306	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR). The AKR9A family includes Aspergillus nidulans sterigmatocystin biosynthesis dehydrogenase StcV, Aspergillus flavus norsolorinic acid reductase (NOR), and Phanerochaete chrysosporium aryl-alcohol dehydrogenase [NADP(+)] (AAD), are founding members of aldo-keto reductase family 9 member A1-3 (AKR9A1-3), respectively. StcV may be involved in the dehydration of 5'-hydroxyaverantin to form averufin. NOR is involved in aflatoxin biosynthesis. AAD (EC1.1.1.91) is involved in lignin degradation and reduces aromatic benzaldehydes to their respective alcohols in the presence of NADP(H). The AKR9B family includes Saccharomyces cerevisiae aryl-alcohol dehydrogenases AAD14p, AAD3p, AAD4p, and AAD10p, which are founding members of aldo-keto reductase family 9 member B1-4 (AKR9B1-4), respectively.	1.53601e-159
NC_019670.1\|WP_015094981.1\|2881700_2882591_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.4938e-36
NC_019670.1\|WP_015094991.1\|2892441_2893956_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|237233	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase.	0
NC_019670.1\|WP_015094989.1\|2889072_2890809_-\|phosphoethanolamine-transferase-CptA	gnl\|CDD\|333729	NF012179, CptA, phosphoethanolamine transferase CptA.	0

>NC_019670.1|WP_015094987.1|2887921_2888413_+|GNAT-family-N-acetyltransferase
MDSAEILVLQASYTNPVHAEAICLVLNHYAEDPMGGGQPLPAHVLEQLPAELARRPHAFSVLAFVGGEPAGLVNCFEGFSTFACRPLVNVHDVSVVKKFRGLGLSQKMLQKVEDIARQRGCCKLTLEVLEGNAVAQGSYEKAGFAAGMFDPAHGRMLFWTKSL
>NC_019670.1|WP_015094986.1|2887222_2887804_+|DinB-family-protein
MNQPLSHHLLTMAYQNAWANHRLAKAWRQLSPQELIAARVSFFPSIRATLNHILTCDWFYVDALEREMRGDDPHPDCRVFFKEDEPCLIASDLVREQAHVDRRLIAYCEQLRDASLGKIVTIARDTPQYDSRLRLLSHLFEHQIHHRGQVHAMLSGTTVKPPQLDEFFCAGESHLRAEDFAELGWTEALIWGV
>NC_019670.1|WP_015094985.1|2886088_2887207_+|cell-division-protein-ZapE
MTIESPLSAWQHAIEQKGFVQDEAQEHAVWALQKCHEALHEGRSPVTGVYLWGPVGRGKTWLMDQFYQSLRVPARRQHFHHFMGWVHQRSFQLTGTADPLKALARELSEAVRVLCFDELFVNDIGDAIILGRLFQVMFEQGVVVVCTSNLPPDQLYADGFNRDRFMPAIAAIKQHMQVIAVNGAEDHRLHPGAVSQRYWVAEPGKPGALGEVFQALSDGQSESCEPVPVGYRSLEVVKASPTVLWTRYAALCEQPFAAMDFIALCDTFDAILLGDVPNLSAQKRAGRIARGTEDGVERVEAGDRELPQLSVHDDGVRRFIALVDECYDRKVPLYVEAQVPMAALYTEGYLEFPFRRTLSRLQEMQLQRFAEV
>NC_019670.1|WP_015094984.1|2884877_2885930_-|aldo/keto-reductase
MHYKVFGRKTGLRVSELALGAGNFGTGWGHGAERDEARRIFDGYLEAGGNFIDTANGYQGGQSEAMLSEFIQAERDSLIIATKYTLGTTPAAGISHTGNSRKNMVRAVEESLKRLKTDHIDLFWAHMSDGVTPMEEILRGFDDLVSAGKIHYAGLSNFPAWRIARADLLAEVRGFAPIAAIQVEYSLAERTAEREQLPMAEALGLAATLWSPLGGGFLTGKYRNSEGDNRANKLGVLIHAEKSARETALLDTLIDVAAELDASPTHVAIAWLREKAKRSTTALIPILGSRTREQLDATLGALDVQLSTDQLARLDGVSDVAKGVPHESIAGSFARFSGGQVLDLPIVPVA
>NC_019670.1|WP_015094983.1|2883801_2884761_+|agmatinase
MDVPMQNDQALTRDSLYGTAAESTYAGITSFMRRRYSRDLRGVDVAVSGVPFDTATSNRPGARFGPRGIRAASAGIAWERHWPWTFDPFDHLAVIDYGDCNFDYGSPQSTPECIEAHAEHILNAGTAMLTFGGDHFITYPLLKAHARKHGALSLIHFDAHSDTWPDEEGKRIDHGTMFWHAAREGLVDPSRSVQIGLRTTNDDHQGFQVLDARQVHRRGCEAIVEAIRARVGDNPVYLTFDIDCLDPAFAPGTGTPVCGGLSAVQALEILGGLRGINLVGMDVVEVAPAYDSAEITSLAAATLAMEMLCLYAARHKVDK
>NC_019670.1|WP_015094982.1|2882692_2883784_+|polyamine-ABC-transporter-substrate-binding-protein
MAPMFKLCLPALFLAMAASAQAEDKVVNLYSWADYVAPETLQRFEQETGIHVRYDTFDSSEVLETKLLTGGSGYDVVVPSSSVLARGLAAGALKPIPHEGLKGYANLDPDLLEKLAAVDPGNRYGVPYTWGTLGLGMNVEALKQRLPDVPLNSLDLLFKPEYASKLKDCGIAILDSPQEVIGLALHYLGKDPYSTDRNDLSAAEALLHQLQPSVLYVATGRQISDLANGSVCLALTYNGDASMAADQARKAGKPYEIAYRIPREGTLVWQDNLAIPKDAPHPEAARAFIEFMLRPESVAALTNTLFFATANQAATPLVDEAVRTDPDIYPLADVRERLYADRSMNLKDLRQRTRLWTTFRSRQ
>NC_019670.1|WP_015094981.1|2881700_2882591_-|LysR-family-transcriptional-regulator
MLGQLHDLDLHLLRLFVSVVECGGFSAAQGQLGLSQSSISQQMAKLETRLGYRLCSRGKGGFRLTPKGEQLLSATRGLFQSIEAFRHQSNGVAGRLIGEVRLGLSEALDQSVLQRVAEAIRRFRERDESVRIELISAMPGEMERLLLQQRLDLAIGYFSQVQSAFDYRELFIETQHLYCAPGHPLFTSAQPDDQDLQACDRVDHPYRFLRSDEPFQGKRCSARSEQVEGTLAFILSGKHIGYLPSHFARTWEDKGLLRSVRSDMSFDVAFHLARHRAQVAGDAQKAFEEDLLAAFV
>NC_019670.1|WP_015094980.1|2880429_2881536_-|enoyl-CoA-hydratase/isomerase-family-protein
MTAQVTSNGPLSMDAMQNEVLAEVRNHIGHLTLNRPAGLNALTLDMVRNLQRQLDAWAQDPHVHAVVLRGAGEKAFCAGGDIRSLHDSFKNGDTLHEDFFVEEYALDLTIHHYRKPVLALMDGFVLGGGMGLVQGADLRVVTEKSRLAMPEVGIGYFPDVGGSYFLSRIPGELGIYLGVSGVQIRADDALYCGLADWYLESARLGTLDEKLDQLQWHDTPLKDLQSLLATLAVQQLPDAPLSALRPAIDHFFAQPDVPSIVEQLRQVTVADSHAWAASTADLLETRSPLAMGVTLEMLRRGRELPLEQCFALELHLDRQWFERGDLIEGVRALLIDKDKTPRWNPPTLKALDAEHVASFFSGFDRNEG
>NC_019670.1|WP_007970104.1|2879274_2880426_-|acyl-CoA-dehydrogenase-family-protein
MHDIELSEEQVMIRDMARDFARGEIAPHAQAWEKAGWIDDGLVAKMGELGLLGMVVPEEWGGTYVDYVAYALAVEEISAGDGATGAFMSIHNSVGCGPVLNYGSEEQKQTWLADLASGKVIGCFCLTEPQAGSEAHNLRTRAELRDGQWVINGAKQFVSNGKRAKLAIVFAVTDPDLGKRGISAFLVPTDTAGFIVDRTEHKMGIRASDTCAVTLNNCTIPEANLLGERGKGLAIALSNLEGGRIGIAAQALGIARAAFEAALAYSRDRVQFGKTINEHQSIANLLADMHMQLNAARLMILHAARLRTAGKPCLSEASQAKLFASEMAEKVCSSAIQIHGGYGYLEDYPVEKYYRDARITQIYEGSSEIQRMVIARELKNYLV
>NC_019670.1|WP_007970103.1|2878287_2879061_+|enoyl-CoA-hydratase
MSYETILLETHGRVGLITLNRPQALNALNAQIVSELNQALDGFEADANIGCIVLTGSKKAFAAGADIKEMAELTYPQIYLDDLFSDSDRVANRRKPIIAAVNGFALGGGCELALMCDFILAGDNARFGQPEINLGVLPGMGGTQRLTRAVGKAKAMEMCLSGRLIDAVEAERCGIVARIVPSDELLDEALKVAALIAKKSLPIAMMVKESVNRAFEVSLAEGVRFERRVFHAAFATQDQKEGMAAFIAKREAEFVGK
>NC_019670.1|WP_015094988.1|2888709_2888919_-|hypothetical-protein
MKRTAVILAGLMALGSTSAFAEGGAERMRYYFESLRLAQQEALGHPIQSTELRVPDDQTAQMTETYRPK
>NC_019670.1|WP_015094989.1|2889072_2890809_-|phosphoethanolamine-transferase-CptA
MSLFERSKTTAAGFDWAGFVWLFVFFWYFSGITQLLIQLTGTSGFSGFRQAFVMSAIWLAPMLLFPKQTRVMAAVIGIVLWACSMASLGYFFIYQQEFSQSVIFIMFESNVAEAGEYMTQYFAWWMIPAFLAHTAFAYFLWTRLRPVYLPRGKAIVAALGIVVAVVGYPLIKQTLRTGSFAEGFDKFETRIEPAVPWQMAVAYHRYLETLAGMQDMLNSASRIAPLHNLKDAMANTPATLVLVIGESTNRQRMSLYGYPRQTTPELDKLKDQLDVFDNVITPRPYTIEALQQVLTFADEENPDLYLSTPSLVSMMKQAGYKTFWITNQQTMTKRNTMLTTFSEQADEQVYLNNNRNQNAAQYDGDVIEPFNKALADGAPRKLIVVHLLGTHMSYQYRYPQAFDKFQDRNGVPAGVRDDQVPTYNSYDNAVLYNDFVVSSLIKDYAKTDPNGFLLYLSDHGEDVFDSAGHNTLGRNENKPTAPMYTIPFMAWASPKWRAGHDWNLAGDLSRPYSSSHLIHTWADLAGLSFDELDRSKSVVSDSFKARPLMIGNPYEREQRALIDFSLMKPKTSPAVVQQ
>NC_019670.1|WP_083884563.1|2891008_2891191_-|hypothetical-protein
MGTLHTALPAQTLYVTIRRDELRQLKDERDQLKQELAQLRLLLQTGQTQPLAAVQRAPLT
>NC_019670.1|WP_015094990.1|2891464_2892445_+|decarboxylating-6-phosphogluconate-dehydrogenase
MQLGIIGLGRMGGNIARRLMLNGHTTVVYDRNTAFVEALSAEGSTGVTDLPALVAGLARPRAVWVMLPAGAPTEETIDTLSTLLEAGDTIIDGGNTFYKDDIRRARTLSEKGLHYIDVGTSGGVWGLERGYCMMIGGDAATVTRLDPLFATLAPGMGDIPRTKDRKSDDDRAERGYIHAGPAGAGHFVKMIHNGIEYGMMQAFAEGFDILQTKNSESLPADQRFDLNVADIAEVWRRGSVVSSWLLDLTADALASDPKLDGFSGSVADSGEGRWTIEAAMEQAVPVPVLSNSLFSRYRSRGQGTFGDKVLSAQRFGFGGHVETSKK
>NC_019670.1|WP_015094991.1|2892441_2893956_+|glucose-6-phosphate-dehydrogenase
MTHVIRRKSKAEPAPATTLFLFGAHGDLVKRLLVPALYNLKRNGLLGDGLRIIGVDHNAISDEGFAQKLEDFIRNEMAGKGDHTLDPEVWSRLAKGISYVQGDFLDDSTYQALAAKIADSGTGNAVFYLATAPRFFSEVARRLGAAGLLEETSEAFRRVVIEKPFGSDLQTAEALNACLLKVMTEKQIYRIDHYLGKETVQNILVSRFSNSLFEAFWNNHYIDHVQITAAETVGVETRGSFYEHTGALRDMVPNHLFQLLAMVAMEPPAAFGADAVRGEKAKVVGAIRPWTVEEARANSVRGQYAAGEIDGKVLPGYRQEDKVAPDSSTETYVALKVMIDNWRWVGVPFYLRTGKRMSVRDTEIVICFKPAPYAQFRDTEVDELQPTYLRIQIQPNEGMWFDLLAKRPGQALKMDNIELGFAYKDFFEMQPSTGYETLIYDCLTGDQTLFQRADNIENGWRAVQPFLDAWQQDASVQSYAAGENGPKAGEELLTRDGRVWHRLG
>NC_019670.1|WP_015094992.1|2894055_2895558_-|sodium/proton-antiporter-NhaB
MSGSMAQAFAHNFLGHSPRWYKACIVGFLILNALVMWTAGPVAAGWLLVLEFIFTLAMALKCYPLMPGGLLLVEALLLKMTTPQALYDELLHNFPVILLLMFMVAGIYFMKDLLLYLFSRLLLGVRSKAALALMFCFLSAFLSAFLDALTVTAVIISAAVGFYSVYHRVASGNDPRQDSEYSDDKHLPTLHQGDLEQFRAFLRSLLMHGAVGTALGGVCTLVGEPQNLLIGHEMGWYFYEFFTKVAPVSLPVLVAGLVTCVLLEKLRWFGYGTLLPDNVRAVLANYAAEDNAERTARQRAALLVQGAAALILIAGLAFHIAEVGLIGLMVIVLITAFTGITDEHRLGTAFKDAMPFTALLVVFFAVVAVIHDQQLFSPLIQWVLALPADQQPGMLFIANGLLSAISDNVFVATIYITEVKRAFMAGEMTREHFETLAIAINTGTNLPSVATPNGQAAFLFLLTSAIAPLVRLSYGRMVWMALPYTVVMGLLGWYAVSYWL
>NC_019670.1|WP_015094993.1|2895636_2896926_-|hypothetical-protein
MPIQSAIARPAVRNTAGTLDTTFAGNGKTQVYFADSLCSMANDVAIDARGRMLVAAKVVMAEGSRFGLARLLEDGSADLAFGRQGSVIGQFEPGFEAMGAKVLVMPDGNILLAGLQYDNAHRTLPGLALFDQEGRLVESFGDNGRRVVRLPGGLSLGMRDIWLPPGVPGAEACDVGVQRDGRILILANHHFEQADHVGLLIRLDVEGSLDCSFNGRGFVVVRHLLMNTWLSSLTVQGDGRVLVGGSINFPEEGLLARYHADGRLDDSFAVDGFLTFKARGHGARVSQVVQQINGDVLCFGSSREPMHCLTFKMHSNGRPDNHCNGGQPQRLVIGHNGCQWNTAQLQPDGGVLTAGATIGGIDADFIVGRYLPNGLPDRRFGKGSGYTRTRLGPSLDTATCVAAQANGNIVVGGYSLHGNYKAVIARYQG
>NC_019670.1|WP_007970062.1|2897212_2897479_-|hypothetical-protein
MNAPLRINEALLIADRAFKPFKCVAWAPQDGNGELSLTVIDRTSTSIGRKQIPSSAYSDPAQLELLLEQARAELSEEGYTLQSWSMPH
>NC_019670.1|WP_015094994.1|2897822_2899148_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSDVPASRRLLVVDPCDDCYRLLPGLRDIGWEVDSCTLEHAAERTCDVGLIRLQPYHLEHPEPVKELISRSGAEWIAVLNQEVLRLKNVGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMVRLRGQGTVHVDQSEHELLGDSKPVRELRKLLSKLAPTESPVLIRGESGTGKELVARTLHRLSQRHSKPFIAINCGAIPEHLIQSELFGHEKGAFTGAHQRKVGRIEAANGGTLFLDEIGDLPLELQANLLRFLQEKHIERVGGSQPIPVDVRVLAATNVDLEAAIAKKRFREDLYYRLNVLQVLTVPLRERHGDLSMLANHFSHFYSRETGRRPRSFSEDALIAMGKHDWPGNVRELANRVRRGLVLAEGRQIEARDLGLISQHAIAAPMGTLEEYKTRAERQALCDVLNRHSDNLSVAAKVLGVSRPTFYRLLHKHQIR
>NC_019670.1|WP_015094995.1|2899385_2900693_-|hypothetical-protein
MYRSVSLRTVICLCTLLPVALVQAAPDPELEALKRELLELKQRYEVQQKALAVLEQRVRQVEEQPAPPPPKRLAKSPADLKGNPNVATGTGAAAASGGAAGGSGSSYGQSLAEDSQPAQSVSNLYDEASGFFGGGKFSVETGITYSRYDTRQLVLNGFLALDSIFLGAINLDRIKADTWTLDLTGRYNFNNRWQFDLNVPVVYRQSTYQSGGGNSGAANVTTEDTVKEDPTIGDVNFGIAYKFLDESANTPDAVLTLRVKVPTGKDPFGIKLVRVDENSNLAVPESLPTGNGVWSITPGISLVKTFDPAVLFGSLSYTHNLEESFDDISSNPALKTPGKVRIGDSFQIGAGIAFALNEKMSMSFSVSDLVQRKSQLKEDGGDWQSVVSSDANAGYFNIGMTIAATDRLTIVPNLSIGMTDDAPDFQFSLKFPYYF

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Crispr_ID: NC_019670_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019670_3

3784292-3784383

Orphan

Consensus_repeat	Method
GCGATGGTCGTTAACGATAACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019670_3

>merge|NC_019670|3|3784292-3784383|CRISPRCasFinder
GCGATGGTCGTTAACGATAACGCGTGTGATCTGGATAAACGCGGTCCTTTGTAGGAGCTGGCCTGCCAGCGATGGTCGTTAACGATTACGCG

>NC_019670|3|3|3784292-3784383|CRISPRCasFinder
GCGATGGTCGTTAACGATAACGCG	TGTGATCTGGATAAACGCGGTCCTTTGTAGGAGCTGGCCTGCCA
GCGATGGTCGTTAACGATTACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019670.1\|WP_015095706.1\|3792799_3793477_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NC_019670.1\|WP_015095698.1\|3784482_3785481_-\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NC_019670.1\|WP_041474900.1\|3787660_3788008_+\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015095695.1\|3779191_3780136_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_019670.1\|WP_015095689.1\|3771015_3773487_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NC_019670.1\|WP_015095701.1\|3788091_3788712_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_019670.1\|WP_015095704.1\|3791338_3792382_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NC_019670.1\|WP_015095699.1\|3785565_3786354_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NC_019670.1\|WP_015095696.1\|3780968_3782123_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_019670.1\|WP_015095694.1\|3778169_3779195_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NC_019670.1\|WP_015095702.1\|3788903_3790310_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|224374
NC_019670.1\|WP_015095690.1\|3773488_3774157_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_019670.1\|WP_172435765.1\|3792556_3792709_+\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015095703.1\|3790634_3791120_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_019670.1\|WP_015095700.1\|3786544_3787645_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NC_019670.1\|WP_015095692.1\|3776388_3776685_-\|DUF1330-domain-containing-protein	unknown	unknown	gnl\|CDD\|377765
NC_019670.1\|WP_015095691.1\|3774294_3776268_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926
NC_019670.1\|WP_015095693.1\|3776755_3777865_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|171535
NC_019670.1\|WP_007976227.1\|3780142_3780952_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_019670.1\|WP_015095697.1\|3782511_3784227_+\|amidase	unknown	unknown	gnl\|CDD\|180626

Protein	Function_ID	Function_description	E-value
NC_019670.1\|WP_015095706.1\|3792799_3793477_+\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	8.40014e-54
NC_019670.1\|WP_015095698.1\|3784482_3785481_-\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	1.88051e-116
NC_019670.1\|WP_015095695.1\|3779191_3780136_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.11998e-79
NC_019670.1\|WP_015095689.1\|3771015_3773487_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	3.82662e-12
NC_019670.1\|WP_015095701.1\|3788091_3788712_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.53627e-28
NC_019670.1\|WP_015095704.1\|3791338_3792382_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	3.86859e-58
NC_019670.1\|WP_015095699.1\|3785565_3786354_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.17231e-34
NC_019670.1\|WP_015095696.1\|3780968_3782123_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.99803e-154
NC_019670.1\|WP_015095694.1\|3778169_3779195_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.95676e-95
NC_019670.1\|WP_015095702.1\|3788903_3790310_-\|cytosine-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	2.82272e-65
NC_019670.1\|WP_015095690.1\|3773488_3774157_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	9.91931e-82
NC_019670.1\|WP_015095703.1\|3790634_3791120_+\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	1.56882e-54
NC_019670.1\|WP_015095700.1\|3786544_3787645_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.15042e-166
NC_019670.1\|WP_015095692.1\|3776388_3776685_-\|DUF1330-domain-containing-protein	gnl\|CDD\|377765	pfam07045, DUF1330, Domain of unknown function (DUF1330). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.	6.24641e-37
NC_019670.1\|WP_015095691.1\|3774294_3776268_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_019670.1\|WP_015095693.1\|3776755_3777865_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|171535	PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NC_019670.1\|WP_007976227.1\|3780142_3780952_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	2.53607e-73
NC_019670.1\|WP_015095697.1\|3782511_3784227_+\|amidase	gnl\|CDD\|180626	PRK06565, PRK06565, amidase; Validated.	0

>NC_019670.1|WP_015095697.1|3782511_3784227_+|amidase
MIEVTEVSIAELRAALESGQTTSVELVQAYLARIDAYDGPETPTALNAVVVRNPEALAEAQAADARRAKGQVLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLIAYRDAFTIERLRAAGAICLGKTNMPPMANGGMQRGVYGRAESPYNADYLTAPFASGSSNGAGTATAASFAAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPFARTMADLLEVLDVVVADDADTRGDLWRLQPWVPIPKSSEVRPQSYAALAANSEALKGKKFGIPRMYINADPEAGTSEAPGIGGPTGQRINTRPSVIGLWEQARKALEDAGAQVIDVDFPLVSNCEGDRPGAPTVFNRGIVSKEFLHHELWDLTAWAFDDFLQANGDPKLNRLADVDGPQIFPHDPGTLPNREGDLVAGMDEYVRMAERGITPWDQISTVPDGLRGLEKTRKLDLEDWMDRLGLDAVLFPTVADVAPANADVDPHSADIAWSNGIWVANGNLAIRHLGVPTVTVPMGVMPDIGMPVGLTFAGRAYDDSSLLHLASAFESTGSKRMIPPRTPPLAADKR
>NC_019670.1|WP_015095696.1|3780968_3782123_+|ABC-transporter-ATP-binding-protein
MSAVIKDSAQQNDKSLVSLRNLNKHYGDFAAVDNISLDIKDGEFLTFLGSSGSGKSTTLSMLAGFETPSSGEILVNGQSLVNVPPHKRDIGMVFQRYSLFPHLSVRDNIAFPLTIRKLAAAERERRVDAMLKLVQLEQFAHRRPSQLSGGQQQRVAIARALVYEPRILLMDEPLGALDKKLREDLQDELRQLHRRLGITIVYVTHDQEEAMRLSQRIAIFSHGKIVGLGSGYDLYQNPPNAFVASFLGNSNFLKLKAQGNAVATFEGQPLSIRLTAGLQTDQDVLLMVRPEKALALSNEQALAEPLAAGWNEVSAKVVEVLFLGESQTCSVITAGGTSMTVKALSAAGMPLKAGDPVRVRWATADACVYTEWAESDLNKAAGAH
>NC_019670.1|WP_007976227.1|3780142_3780952_+|ABC-transporter-permease
MLLTPNAMSRRMRFGLYATTGLIGLFLLLPIVFIVLLSFGSSQWLVFPPPGWTLKWYGQFFSNADWMNAAMASLKVAVLTTFFAVALGLPTAFALVRGRFPGREMLYGLFTLPMIVPLVIIAVAVYALFLKLGYTGTMFAFVVSHVIVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAVFKVTFPAIRPGMVAGALFAFLVSWDEVVLSVMMASPTLQTLPVKMWTTLRQDLTPVIAVASTLLIGLSVLVMVIAAALRRRNEISA
>NC_019670.1|WP_015095695.1|3779191_3780136_+|ABC-transporter-permease
MKMTATAPRPSTASGSAIGAAGSAVGQTLAKQPSPSLKQRWRGASNLVPALLFLGLFFLAPLIGLLLRGVLEPVPGLGNYEQLFANSAYARVLLNTFSVAGLVTLFSLLLGFPLAWAITLVPRGWGRWILNIVLLSMWTSLLARTYSWLVLLQASGVINKALMAMGIIDQPLEMVHNLTGVVIGMSYIMIPFIVLPLQATMQAIDPMILQAGSICGASPWTNFFRVFLPLCRPGLFSGGLMVFVMSLGYYVTPALLGGAQNMMLPEFIIQQVQSFLNWGLASAGAALLIVITLVLFYFYLKLQPESPVGASNAR
>NC_019670.1|WP_015095694.1|3778169_3779195_+|ABC-transporter-substrate-binding-protein
MVLNKRATAVLFAGLLSVTSQALLAAESVNFVSWGGSTQDAQKQAWADPFSKASGITVVQDGPTDYGKLKAMVESGNVQWDVVDVEADFALRAAAEGLLEPLDFKVIDRDKIDPRFVTDHGVGSFFFSFVLGYNEGKLGANKPQDWSALFDTKTYPGKRALYKWPSPGVLELALLADGVAPDKLYPLDLDRAFKKLDTIKKDIVWWGGGAQSQQLLASGEASMGQFWNGRIHALQEDGAPVGVSWKQNLVMADILVIPKGSKNKDAAMKFLANASSAKGQADFSNLTAYAPVNVDSVARLDSALAPNLPTAYAKDQITLDFAYWAKNGPAIATRWNEWLVK
>NC_019670.1|WP_015095693.1|3776755_3777865_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MAFNSIEEIIEDYRLGKMVLLVDDEDRENEGDLLLAADCCTPEAISFMAREARGLICLTLTDEHCKRLGLEQMVPSNGSVFSTAFTVSIEAAVGVTTGISAADRACTVAAAVAANAGPADIVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGHTPASVIVEVMNDDGTMARRPDLEVFARKHGIKIGTIADLIHYRLSTEHTIVRIGERDLPTVHGTFRLITFEDRIEGGVHMAMVMGDLRRDEPTLVRVHVIDPLRDLVGAEYSGPTNWTLWAALQRVAAEGHGVVVVLANHESSQALLERVPQLTQSPRQFSRSQSRIYSEVGTGAQILQNLGVGKLRHLGPPLKYAGLTGYDLEVVESIPFTE
>NC_019670.1|WP_015095692.1|3776388_3776685_-|DUF1330-domain-containing-protein
MKAYWIAHVDVTDSDQYSQYTRRAPQAFALYGGRILARGGRSEAMEGRATPQRSVVIEFDSYEQAVACYHSTLYQEARGYREGVALAEVIIVEGVAPL
>NC_019670.1|WP_015095691.1|3774294_3776268_+|MBL-fold-metallo-hydrolase
MPRFTLCPRGLLACLITACLAQSVVAADAPVAASPQTTASNAAVLKQLPFTDRTDYESVTKGLIAPFKGQVKDASGKVIWDIQAYDFLAKDQAPESVNPSLWRLAQLSAHAGLFEVSPRLYQVRGLDLANMTIIEGDDGLIIIDPLTMAETAKAALELYYQNRPHKPVVAVIYSHTHVDHFGGVRGVIDEADVKAGKVKVFAPAGFMEHVMSENVYAGNAMSRRAQFQFGSLLPRGEKGQVDAGLGKSTPSGGTVTLIPPTDLIDKALETRTIAGLEVEFQLTPGTEAPAEMNLYLPQLRALCMAENATQMMHNILTPRGAQVRDAKAWAEYLDGSLARYGDKSDVLFAQHNWPTWGGERIRTFLADQRDMYAFLNDRTLHLLNQGLTPLEIADSIKKLPGSLDQKWYTRGYYGSLSFNTRAVYQRYMGFYDGNPANLNPLPPVETAKYTVEAMGGEAAVLEKMRAAMNKGEYRWAAQLGNQLLFANPDNGDARKAQAEALEQMGYQSENATWRNMYLTGAMELRNGVPPHAGTSVSVDMVRAMSPQMFFDFLAVRLDSEKAAGHDLTLNWTFEDLNKDFNLTLRNGVLTHRAGLNAQADASVTMSKATLEQISLKQLDIPTAIQKGLIKLQGNGKKLGELMTSLDTFAPQFNIVTP
>NC_019670.1|WP_015095690.1|3773488_3774157_-|ABC-transporter-ATP-binding-protein
MLEVHGVFKSYATPQGPLPVLQGVDLTLRPGSSLALMGESGSGKSTLLHLIAGLDKVDRGSIRSGGHRLEQMNEGQLASWRRTEIGLVFQQFNLIGSLRVEDNLAIQARLAGRLDPRWQAHLVQRLGLGELLRRYPEQLSGGQQQRVALGRALASRPPLLLADEPTGSLDETTGAEVLQLLLELLDDSPTSLLMVTHSPGVAARLAQKALLCGGRLAAVGER
>NC_019670.1|WP_015095689.1|3771015_3773487_-|ABC-transporter-permease
MGIFGQTLRALLSHWRQHPVQFFSVLTGLWLATGLLTGVQALNSQARDSYASASQLIGGEPQASLSAPGGGTFAQQWFVDLRRAGWPVSPVLQGGSRSRGMKNSVLQLMGIEPVSLPAGAAVAGQALAIEQVVGFFSPPGSTWISLQTLQALGLREGDRPLNLAGVALPPLQVQADMAPGVLLVDIGFAQQILGLPDQLSRLLLPKDFTAPLPHAFQRQLQLKSAGEENNLTRLTESFHLNLAALGVLSFVVGLFIVHAAIGLALEQRRGLLRTLRACGVSARMLIACLTVELGGLALIGGVAGVVSGYLLAGVLLPDVAASLRGLYGAEVAGQLNLGLSWWFSGIGLSLIGALLAGVNSLLRAARLPLLALADPQAWHQAHARWLRRQAWVAAMAGVIALLALIFGDSLVSGFVLMAALLIGAALALPVVLSSLLSLASQRSRSVLGQWFVADCRQQLPALSLALMALLLAMAANIGAGSMTAGFRQTFSDWLEQRLTAELYLNPQNPAQARELHSWLDQQPQLAAVLPNWQVSIQLQGWPTDLSGIIDHPTYRQHWPLLEALGDNPWERLAKDDAVMLSEQLARRLRVQPGDHLTLPTPTGPWSPRIVGIYADYGNPKGHILVNIRHLLRGWPQLTPNRFNLRIEPASIPAFVTALQARFTLDDSRIVDQARLKGWSTQVFERTFAATAALNSLTLCVAGVALFISLLTQSQSRLGQLAPLWALGVTRRHLMLLNLGQTWLLALLTLVLALPLGIALAWCLDTVINVQAFGWRLPLRVFPLQLLQLMGLALVATLLASAWPLLRLYRTQPADLLRTFTHEN
>NC_019670.1|WP_015095698.1|3784482_3785481_-|bile-acid:sodium-symporter
MTRPRLLPDNFTLTLIGVVALASLLPASGQVAVGFGWLTNIAIALLFFLHGAKLSRESIIAGAGHWRLHLLVFSLTFVLFPLLGLALKPVLSPLIGNDLYMGMLYLCALPATVQSAIAFTSLARGNIPAAICSAAASSLFGIFLTPLLVTLLLNVHGEGSSTLDAILKISVQLLLPFIAGQIARRWIGNWVARNKSWLRFVDQGSILLVVYGAFSEAVIEGLWHQIPLLDLVGLVVACCVVLALVLVASTVLGKAFGFNQEDRITILFCGSKKSLATGVPMAQVLFAGSTIGVLILPLMLFHQIQLMVCAVLAQRFANRPESIPQLMAQVDP
>NC_019670.1|WP_015095699.1|3785565_3786354_+|helix-turn-helix-transcriptional-regulator
MPPKGHDKSIRRSIPGLSSLPRPLYGRTESLPNRALTRRHSHPWVQLSYAIQGVLEIQTGIGRFVAPPERAVWIPAGMPHRVFSSPRTEMRSLYIDCSVSTWAPPGCHVLAVSDLLRELIRAFSQIPVEYDQDGAHGRLAQVILDQLAEAPQIDLMLPLPQDSRLRQIAQSLESHPEQQTTLSHWSDQFGVTEKTLSRLFLRDTGLTFRAWRQRLRLLGALTPLEQGERVTDVALACGYDSTSAFIAAFRQQFGETPGEFFR
>NC_019670.1|WP_015095700.1|3786544_3787645_-|polyamine-ABC-transporter-substrate-binding-protein
MDSMKRILGATVCGLSLLASAVHAEPRELRVYNWADYILPSVPKDFARDTGIKVTWDTFDTNESLEAKLLTGNSGYDLVVPSNQFIETQIKAGVFQKLDKSKLPNWSHQDPALLKLLDKNDPGNQYGVPYMYGTVLIGFNPAKVKAALGENAPVDSWDLVFKPENMEKLKACGVAMLDSPSEILPLALHYLGLDPNSQNPDDYEKAKALMLKVRPYVTYFNSAKYMTDIANGDICVAIGYSGSFYQFGNRAKEAGNGVVVDWRLPKEGAPIWFDTFAIPKSAKNVAEAHEFLNNLLDPKVIAPISDFLGYPNANKDSLALINKDITGNPNLTPTSEALKTLYVVQPLPQKLERVRTRVWTSIKSDQ
>NC_019670.1|WP_041474900.1|3787660_3788008_+|hypothetical-protein
MWREFDGFYVLYTAAALKIAKGKEVKLLVVILAEGVAGSQRESGQKEIETAKIPVRIDQRREAFHRQRGGQPIHRFFCGSEVAGVLPGRLLSNAVKVVFVEGYGLSRRGMDDHCC
>NC_019670.1|WP_015095701.1|3788091_3788712_+|glutathione-S-transferase-family-protein
MNHRIELFGASTGNSLRAAIALEESGIAYTARKLDLYAQEHRGPDFLALNPAGKVPTLIDHGTTPPLVINQSNAIIQYADSIAPGKLAPAQPGPVRTRVIDRYFFFVTDVIAPSHAAFFLHRAGQDKAAAIIDLRVIEQLTYSESFLTGGFMAGEQFSMADISAFTIAMAFRDRLDWKLLPQLSRWFDTVEARPALQRGLNVFKHS
>NC_019670.1|WP_015095702.1|3788903_3790310_-|cytosine-permease
MSQMSRQDPLIENHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVVQVFHLNLFWGLLAIALGHMVGGVVIALASAQGPCMGIPQMVQSRGQFGRYGALLIVFFAALIYIGFFISNIVLAGKSIVGIAPSVPVPASILIGALSATAIGVIGYRFIHTLNRIGTWVMGSALLAGFLYIFAHDLPADFFTRGGFNLSGWLATVSLGIIWQISFSPYVSDYSRYLPADIGITRPFFATYLGATLGTILSFTFGAVAVLATPEGTEAMAAVKQSTGWLGPILMVLFLLNIISHNALNLYGAVLSIITSIQTFASQWTPSIKVRVVLSGIILAGCCVVALGASANFISQFIGLILALLLVLVPWASINLIDFYLIKRRRYDIASIFRADGGIYGRFNLHAIIAYFIGIIVQLPFANTSLYVGPYANLVDGADLSWLVGLVVTCPLYYCLATRSQAQESRAVKFGYSD
>NC_019670.1|WP_015095703.1|3790634_3791120_+|flavin-reductase-family-protein
MIDAAIYKQVMGSFPSGVTVITTLDDDGQIVGLTASAFSSLSMDPALVLFCPNYSSDSYPVLIKNKRFAIHVLSGGQQSEAYAFARKGKDKAQGIEWTLSELGNPILANATAVIECELWREYEGGDHAIMVGAVKNLIVPQQSSGPLVYCRGKMGALPVLA
>NC_019670.1|WP_015095704.1|3791338_3792382_+|LLM-class-flavin-dependent-oxidoreductase
MKFSLFVHMERWDESVSHRQLFEDLTELTLMAEAGGFSTVWIGEHHSMEYTISPSPMPLLAYLAGKTTTIHLGAGTIIAPFWHPLRVAGECALLDVISNGRMEVGLARGAYQIEFDRMAGGMPASSGGQALREMVPVVRALWNGDYAHDGDIWKFPTSTSVPKPIQQPNPPMWIAARDPDSHNFAVANGCNVMVTPLMKGDEEVLDLKNKFQAALDNNPDVPRPQLMVLRHTHVHTADDPQGWEVGAKAISKFYRTFDAWFGNKTTPVNGFLAPSPEEKFAGRPEFELESLHKTAMIGTPEEIIPRIKYYQELGVDEFSFWCDNSLPHAEKKKSLELFIKYVVPAFR
>NC_019670.1|WP_172435765.1|3792556_3792709_+|hypothetical-protein
MITDRLPSLALPSGAARAYLRGEWTASHLHFKRLRASVSAKQNGFWQIVH
>NC_019670.1|WP_015095706.1|3792799_3793477_+|cysteine-hydrolase
MNNNNALLIIDMQQEDGFVLENVDRVVAHAAALLDTARHQRMPVIYTRHINQADGSDLPHGEPLAADGGPGGYRAGTRQVEIIESLTPQSGEWIIDKGRYSAFHRTDLDARLRAMEVDTLIICGVLTDVCVLTSVFDAFALGYRVRLVSDACTTTTEAGHYSALLIMANWVYSLEILTTTECLRALEQRDYLSLIPERPDLFAHQPHELPGTIARLQSRLVRTQE

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Crispr_ID: NC_019670_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019670_4

3831096-3831190

Orphan

Consensus_repeat	Method
TCGCGAGCAGGCTCGCTCCCACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019670_4

>merge|NC_019670|4|3831096-3831190|CRISPRCasFinder
TCGCGAGCAGGCTCGCTCCCACAGTTGGGCTGGGTACATTCGAAAGAAATTGGTTGGCTGGCAGGCCGCCATCGCGAGCAAGCTCGCTCCCACAG

>NC_019670|4|4|3831096-3831190|CRISPRCasFinder
TCGCGAGCAGGCTCGCTCCCACAG	TTGGGCTGGGTACATTCGAAAGAAATTGGTTGGCTGGCAGGCCGCCA
TCGCGAGCAAGCTCGCTCCCACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019670.1\|WP_015095752.1\|3836482_3837286_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015095736.1\|3820370_3821744_+\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752
NC_019670.1\|WP_015095737.1\|3821833_3822280_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240041
NC_019670.1\|WP_015095735.1\|3819607_3820135_-\|DUF3087-domain-containing-protein	unknown	unknown	gnl\|CDD\|378624
NC_019670.1\|WP_144443155.1\|3822965_3823976_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NC_019670.1\|WP_015095733.1\|3817532_3817907_+\|DUF2784-domain-containing-protein	unknown	unknown	gnl\|CDD\|378502
NC_019670.1\|WP_015095745.1\|3831690_3832230_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NC_019670.1\|WP_041474904.1\|3834882_3835401_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015095742.1\|3827412_3830166_-\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|273730
NC_019670.1\|WP_041474905.1\|3839057_3839591_-\|response-regulator	unknown	unknown	gnl\|CDD\|381114
NC_019670.1\|WP_015095734.1\|3817981_3819526_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_019670.1\|WP_015095741.1\|3825511_3827416_-\|phospholipase-D/transphosphatidylase	unknown	unknown	gnl\|CDD\|165912
NC_019670.1\|WP_015095747.1\|3832583_3833057_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NC_019670.1\|WP_015095753.1\|3837266_3838973_-\|type-II/IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|225363
NC_019670.1\|WP_015095751.1\|3835935_3836481_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|377469
NC_019670.1\|WP_015095750.1\|3835400_3835949_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015095746.1\|3832204_3832579_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NC_019670.1\|WP_015095743.1\|3830357_3830681_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015095748.1\|3833059_3834886_-\|secretin-and-TonB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|227133
NC_019670.1\|WP_015095738.1\|3822408_3822876_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019670.1\|WP_015095736.1\|3820370_3821744_+\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	1.16127e-81
NC_019670.1\|WP_015095737.1\|3821833_3822280_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240041	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.59601e-36
NC_019670.1\|WP_015095735.1\|3819607_3820135_-\|DUF3087-domain-containing-protein	gnl\|CDD\|378624	pfam11286, DUF3087, Protein of unknown function (DUF3087). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.70943e-72
NC_019670.1\|WP_144443155.1\|3822965_3823976_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.73213e-08
NC_019670.1\|WP_015095733.1\|3817532_3817907_+\|DUF2784-domain-containing-protein	gnl\|CDD\|378502	pfam10861, DUF2784, Protein of Unknown function (DUF2784). This is a family of uncharacterized protein. The function is not known however it is conserved in Bacteria.	1.32438e-38
NC_019670.1\|WP_015095745.1\|3831690_3832230_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	1.82277e-09
NC_019670.1\|WP_015095742.1\|3827412_3830166_-\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	4.65482e-106
NC_019670.1\|WP_041474905.1\|3839057_3839591_-\|response-regulator	gnl\|CDD\|381114	cd17572, REC_NtrC1-like, phosphoacceptor receiver (REC) domain of nitrogen regulatory protein C 1 (NtrC1) from Aquifex aeolicus and similar NtrC family response regulators. NtrC family proteins are transcriptional regulators that have REC, AAA+ ATPase/sigma-54 interaction, and DNA-binding output domains. This subfamily of NtrC proteins include Aquifex aeolicus NtrC1 and Vibrio quorum-sensing signal integrator LuxO. The N-terminal REC domain of NtrC proteins regulate the activity of the protein and its phosphorylation controls the AAA+ domain oligomerization, while the central AAA+ domain participates in nucleotide binding, hydrolysis, oligomerization, and sigma54 interaction. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.20551e-19
NC_019670.1\|WP_015095734.1\|3817981_3819526_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.04562e-56
NC_019670.1\|WP_015095741.1\|3825511_3827416_-\|phospholipase-D/transphosphatidylase	gnl\|CDD\|165912	PLN02270, PLN02270, phospholipase D alpha.	5.54506e-17
NC_019670.1\|WP_015095747.1\|3832583_3833057_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	3.27709e-14
NC_019670.1\|WP_015095753.1\|3837266_3838973_-\|type-II/IV-secretion-system-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_019670.1\|WP_015095751.1\|3835935_3836481_-\|fimbrial-assembly-protein	gnl\|CDD\|377469	pfam05137, PilN, Fimbrial assembly protein (PilN).	0.00355408
NC_019670.1\|WP_015095746.1\|3832204_3832579_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	6.94706e-18
NC_019670.1\|WP_015095748.1\|3833059_3834886_-\|secretin-and-TonB-N-terminal-domain-containing-protein	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	3.20759e-46

>NC_019670.1|WP_015095743.1|3830357_3830681_-|hypothetical-protein
MFKPTPNPPESETDTTRSASTLHLKPAILKNNAPHNPSTMFIIAPNIDTESLLAHACESLASASVMASDFATFLDGPQRSMLLGIQQVIMLADLAVNRALDNVAPLD
>NC_019670.1|WP_015095742.1|3827412_3830166_-|type-VI-secretion-system-tip-protein-VgrG
MSNTPRTFFDHSRHTLKIDQLDTHLDVLTFEGHEHLSQPYLYRIEFTASDLDIGAEKFIGQYAEFSLYDAPSNVPVFDWEVPRPPKPLRTVYGRITACQRLSGSIDEARYEVTLQPRLALLDRGQQTRIYQHQSVPDIVKSILRDRHGLDTGHFRFNLKREYPQREQVMQYQESDLAFISRILADVGIWYRCIQHEELAFDVVEFCDDQRCYQFDVELPLRSPSGFSNSEQDSVWALKTRHRVVEQQVSVRAYHPDDSRAYLDGEVDQTRGEPATHGVATTRGVADNTYGDAYHYAEPYRVLGKSHLRDEDLQSESGFFYARLRHERYLNNQTHLSGTSSSATLAPGQVLTISGGAPKAFASRVVITKITTRAARDRSLTCDFEAMPYALRLCFRPPLLAKPQIAGTLPARITHPQSNPLYTEIDMQGRYRVKFLFDRDTWPAGRESKWLRQARAYAGDTYGLHLPLIAGTEVAIAFEQGDPDKPYIAHALHDDQHPDLVTQRNDHRNVLRTPANNKLRMDDTRGQEHVKLSTEYGGKSQLNLGHLVDGQRKKRGEGFELRSDGHGAIRGGKGLFISADAQTKAQGPVLDMDAAVGRLQQAGEQLQKLSVDAQAANAEPADVTAQLDLLKQDLEQLKASVLLLSAPQGIALTSGKHLQLAAQDNLMLNAGGEADLSVVKRLFIGVGQGLSLFVRKLGIKLIANQGPISVQAQNDKLELIARHGLDITSTEDEVHITAKKKIVLNGGGSYLSLEQSGIESGTAGDHKVKAAHFEYSGPASMKATHPDYPQSLSRQMLRFNVSQAPNTHHQVWAGMPYTLYADGAELKQGVLDDSGQLLIDHQVVTRGYRLVMANGVTYQIPVPTDYRNAEQAELANRGLHNHPSQADAEVSQPTSHTDHRGLYATVMEGASDQEGKNP
>NC_019670.1|WP_015095741.1|3825511_3827416_-|phospholipase-D/transphosphatidylase
MSQYEIVTPVALQHTQEVTCTPPWYVRNTEYPPAMATYQPLINGEETFRAVHLAISKAKATVDIICWGFQPSMYFIRDGISPCIGELLMAMAREGVKVRILGWEMPFNTAGKAGEANLPGKGPFRYHDRELQPSTDEQYAYDRQWFANCSLADNMAAAHLAARGTPVFVSRGFSVFERAEIAHQAMYKSLDPQVSATTQFILTATATHHQKTVLVDYELPDRAVGFVMGHNMLDEYWDTNDHLAVNRAKDTKPAPNKGPRGDTPRQDISSQVSGPILEHLHHNFASAWRKETGEDLLDLRQAKVVGPQLQCAPDATRQIAQILRTQAQEGKRDIEKLYLQAVNNATQFIYIENQYFRWPPLAELIKAVAAGQTKAGRDPAIHGPLHLFVITNASKSGIGSGTVNTQRMLESLGRGHTMPAITKLRRIEKAKVEAAALESGLGERLEQHALVTLTKLTDALGGTDFSDEAREAQRRKNLDNDLRKGSLQSQIEAIEGETFAQLPELSGLKVHVCSLVAPDSPAGKKWMEVYIHSKLMIVDDVFTTHGSANINTRSMQVDSELNIAHEWASVTQGLRRRLWEMHTDKRGAQDNPEQAFIAWQKIIKENKSRQTDELVPYAPLVEFYFGDSKLSDLD
>NC_019670.1|WP_144443155.1|3822965_3823976_-|sel1-repeat-family-protein
MYRIASENGHYKANINLQNGAMRGYFRLRGEESLRMSEQLINAGVATGYYFVGIFLQHGAAGLQQDHEMALRYYRKAADEGNPLAQAYVADKLAPIKIAPVVARQMRRCAAEQGNGKAAVALGINLKNKGEYQEALEVFQMGVVAGNDGAAGWLEEGFRGPKPDDRLHYLGQQEDLERADRYEKIWKILYGYSYANPKVPEINEIVPLPPATLPAWDGKLQWLEERLANVPPEKPSEALIHQLAKAKLLDPASGRPLPDSPDFIREPYPRLTCNSGQACPQTGYWKAEGIVDKIQLFEKGEIMPTLNVQRSHSRFLLADRVTIAEENIRWSLFGES
>NC_019670.1|WP_015095738.1|3822408_3822876_-|hypothetical-protein
MTKLKAGKINVEFEAAPQGTETTAGDGYVQVDREGNFVGAQVSGGVVEKVEGGVKVTRPDGAIVFLHDAGNITIENMIPKSVGVEDLFEIESFAMRTVDQLRIYRVEYFGGGYVEVTYSQEGQVIGLTGHNIKQSISKDNEILVRQGDSASGQVH
>NC_019670.1|WP_015095737.1|3821833_3822280_+|NUDIX-domain-containing-protein
MRQRNSARLLVINPSQQVLLFHFQHKGDALDGQSHWATPGGGLEPGESFEAAAVRELFEETGLNITAVGASVAERSFPMMLPSGETVLSVERYFVVHTDSERLSREGWTAHEVRVMAHHKWWSVEDLLTTSETVWPEQLIEMLESALN
>NC_019670.1|WP_015095736.1|3820370_3821744_+|LOG-family-protein
MTQRQVINASVSPKGSLETLSQREVQQLSEAGSGSIYSLFRQCALAILNTGAHVDNAKTILEAYKDFEIRIHQQDRGVRLELLNAPADAFVDGEMIASTREMLFSALRDIVYTENELDSQRIDLSNSQGISDYVFHLLRNARTLRPGVEPKIVVCWGGHSINTEEYKYTKKVGHELGLRSLDICTGCGPGVMKGPMKGATIAHAKQRIHGGRYLGLTEPGIIAAEAPNPIVNELVILPDIEKRLEAFVRVGHGIIIFPGGAGTAEEFLYLLGILMHPDNAGLPFPVVLTGPKHAAPYLEQLDAFVGATLGDAAKQHYQIIIDNPAEVARQMTLGLKAVKQFRRERNDAFHFNWLLKIDEGFQRPFDPTHENMANLKLSLDLPSHELAANLRRAFSGIVAGNVKDKGIRLIEEHGPYQIRGDAAIMQPLDLLLKAFVAQHRMKLPGGAAYVPCYRVVA
>NC_019670.1|WP_015095735.1|3819607_3820135_-|DUF3087-domain-containing-protein
MFEIQPMNADTYRQQTRRSTVIIALIFLALAMLLSTAAVALFGTPGGDNLRFNVGGVFVAVLAMVALMRKVFWRQAWMAPAVYSWQLKRSLMSITNVMHHVTAGVERGDPVAMKLLRFYHLGLNQMHQLDGNTSDHGQLIREMDQHKERMQAQGIETEQTRLDPAWLEAVKQVSR
>NC_019670.1|WP_015095734.1|3817981_3819526_-|GGDEF-domain-containing-protein
MGHPLINDQIQMLRSAVPRLKVRSAVTLLMAVCLSMVAIVIWEAWSSRQYHLHDKEVVMSNLAQTLASQAQATIKQADTLLFTLVDRLEHDGVDQSRLPALLNAQRSELSQLHGLFVFDEKGQWLANSNGAGQTGVNNSDREYFIFHRDNPSRGPHIGPSIKSRSSGEWILTVSRRLNHPDGSFAGVALATIYLTYFLQLYDSIDMGSNGVITLIADNASIVIRRPFKESDIGSSLAKSPLFTRLLPKGDAGTATITSVVDGVERVTGYRRVEGYPLIVFAALNKDEVLASWRKETLLSAGIVTLLLSVLGVLGFRLIKLMKQQNLAQVELLDTQDKLLEVNRNLEGLALKDALTGLANRRQLDAFIDAEMGRARRSQSELALLMIDVDHFKPFNDRYGHLAGDECLRKVGAIITDNIKRPGDLAARYGGEEFAVVLPGNDYVGAFLVAEKIRRAVLQAEIAHSDSPEGAVTVSVGVCASNGASQVRSEDLIGAADKALYVAKASGRNMSVIAN
>NC_019670.1|WP_015095733.1|3817532_3817907_+|DUF2784-domain-containing-protein
MLYRIAADGLMLFHLSFIVFVVFGGLLIFKWRHLIWWHPPAALWGMAVEFFHLPCPLTDWENRMRHGAGQTGYGGGFIEHYIWPVIYPAGLTPGIQLGLGSVVLVINVLVYLRLIRQWRLRRAT
>NC_019670.1|WP_015095745.1|3831690_3832230_-|type-II-secretion-system-protein
MAAFIPSGKPSGQDGFTYLGVLFLIVVIGMGLASAGELWATASRRDREHQLLWVGTQYAQALRSYYRSSPGVAMYPKELADLLQDERFPSARHHIRQLYPEPMTGGEWELMRGIDGRISGVYCPSEQKPLKQENFPSEWSDFKGMASYKDWQFVAEKVVLDGTEGLPKEQSTAPQALQP
>NC_019670.1|WP_015095746.1|3832204_3832579_-|type-II-secretion-system-protein
MRRQKGFTLLELMVVMAIIATLMTIAMPRYFTSLEASKETTLRQSLSSMREALDHYYGDTGRYPDSIEQLVELRYLRNQPLDPIAERKDTWVVVAPPDGVAGGVADIKSGASGRARDGSLYSEW
>NC_019670.1|WP_015095747.1|3832583_3833057_-|type-II-secretion-system-protein
MSASQRGFTLVEVVVTLALVGLLAGMAAPLTETVVRRGKEQELRTALYQIRDGIDAYKRAFDAGYIEKSLDSNGYPPNLKVLVEGVRDVRSAKGAKFYFLRRIPRDPLATVKRDDEGGWGLRAYDSSAENPREGQDVFDVYSKARGKGLNGIAYREW
>NC_019670.1|WP_015095748.1|3833059_3834886_-|secretin-and-TonB-N-terminal-domain-containing-protein
MNKSRLLMSLCLCAGLAACSSAQIAKDEASALMESGQYEAGLARIEQGLRENPRDTDLHIALNSGRARAVTALLTQADMDRAQRNFAGARMGYSRVLSIEPNNRRAQDSLRQLDYLRSMDEKLEMARGDLRRGDIYGADRQVKQILELDPQNEGARELQDSIRLVQSRNVVQYPQLRTRLDRPVTLEFRDANLKTIFEVLSQVAGLNFIFDKDLRPDMKATIFVRDVRIEDAVELLLQQNQLHQKVVNENTLLIYPDSPQKLKDYQELVMRTFYLTSIDANTALNMIKTMLKTRDVFVDERLNTLTMRDTGDAIRMAEKLLQSQDQSNPEVVLEVEVMEVARQRILDLGLQWPNTFGVINSDGSPVSILDQLKGIDSSRISISPAPQAKINAQDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQPIVHLNNEVAIKVALEVSNATPLAPTAQGTIPVQVDTRNAQTTLRLHDGETQILAGLVRNDHGSSGNKIPGLGDIPGLGRLFGSNKDDISKSELVLSITPRIVRNLPYQSPSDMEFSTGTETSMHIQAPDRSMSTTVQTGPMSAPIATTVTVGKP
>NC_019670.1|WP_041474904.1|3834882_3835401_-|hypothetical-protein
MNTKRVAGWVAFFGVATALAWFPEYFRQADDSDPAVAAVATSAKGKAPGAAAAASSAAAVVPIKDLSPAGDLFAARSWNAEPALGTVIEQPVVVTPEVQVPTAPPLPFQFVGRLGDRSDLQVFLQSGEKIYVVRKGDVIDETWRLERISDKELSLVYLPLRLAQTLSVGSTE
>NC_019670.1|WP_015095750.1|3835400_3835949_-|hypothetical-protein
MQIHKLIVHEYLQGLGAPGLAGLAMLVLALSYGLAGLLPDWQSLQSLSQQTREATEYLARVEDGTVAAPVVPQRQLDDFRSKLPSQPQATVAIDKIYALAAQERITLSRGEYSLGVDPKTHLARYQILLPVRGSYPQLRRFLHALLGQLPAVVLEDVELQRKNIADTDLTGRIRMTLYLSRS
>NC_019670.1|WP_015095751.1|3835935_3836481_-|fimbrial-assembly-protein
MRPLMLDFQPRRRAGPLGWGLLAGGVVLTLTCALVQQHLSNEAEQQQGHLQTTQRVLTGDNGSKPGLTPAETREQAQNLAEMRKVSQQLRRPWERLFATLEAMPRDNIALLTLTPDARKGLVRISAEAMDLDAMLDFHRRLEASDELSDVSLLSHEIVANVPEHPVQFNLSATWEIGDANP
>NC_019670.1|WP_015095752.1|3836482_3837286_-|hypothetical-protein
MSLLSREQFVAVLGASGVGLGYRQGNATSWLGSVGYIDEGFQAWAVALDTLDRLLAEHAVARAELTVVVSAHFSRYCLVPWSDQISSPAELLGFAQLCFEDLYGAPTQPWSLVLSAEPAGYDRIATALPQDLLERLRALVSTRGLRLRSVQPYLMAAFNHFDKSLDAGDFLFVVAEPVRSVLLLAREGRWASVRSVGSSDSDAALTALIGRENQLQASTSERPLTVYLHAPARIDSHPDVPGVHLRTLEEDRTAVRDCLYVMSRAVA
>NC_019670.1|WP_015095753.1|3837266_3838973_-|type-II/IV-secretion-system-protein
MDRLSLAVEPAQVEGVPTRFTSEQLAQARALATSSGERMLDTLGELSELAPMPFIQCLGVTLHYPVLDTDSLFSATPVFDRVTLAQCIKREFILLRHDDAVIGVFADPFDSARLAWIDECLHGAPLYLVHADDLKAYLARHEESFHAVESLNAHAEGATEIDTLQSLSLTSISEDASVVVKLVNSTLYDALKMHASDIHLGTTGSGLVIKYRIDGVLNNISKIQGSEFAEQVISRVKVMAELDIGEKRVPQDGRFKIGISGRQIDFRVSIMPSIFGEDAVLRVLDKQDLADKVSGVQLQALGFEEDTLRQLRRLAAEPYGMVLVTGPTGSGKTTTLYAMITEINHGVDKIITIEDPVEYQLPGVLQIPVNEKKGLTFARGLRSILRHDPDKIMVGEIRDPDTAQIAVQSALTGHLVFTTIHANNVFDVIGRFTQMEIDPYSLVSALNAVLAQRLIRLVCTSCSAPYSPTEEELEVSGLDPQKVAHYRFVHGKGCGHCRGTGYRGRSAIAELLHLDDELRQMIVERQPISKIKAHACKRGLRLLRESALEMVEQGRTTLEEINRVTFIS
>NC_019670.1|WP_041474905.1|3839057_3839591_-|response-regulator
MLNKVLVVDDEQLLAQNLQDYLQAQALEVRIAHDGAHGIAEADDFAPDVMVFDYRLPDMEGFQVLDAVRQNRKCHFVLITGHPTAEVCERARLLGVSHILFKPFPLAELARAVLDLLDRRREPRPGVSTSEGFVERRQSRTESFPLQLYDGSWVLADRRKNTSASMAPDDEQLLTGE

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Crispr_ID: NC_019670_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019670_5

4816901-4817001

Orphan

Consensus_repeat	Method
GCCCGCCTCGCCGCCGATGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019670_5

>merge|NC_019670|5|4816901-4817001|CRISPRCasFinder
GCCCGCCTCGCCGCCGATGGCGCAGACCATGTAGGCGCCGGCAAACTGGCTTCCGACGGCGCTGACCACACCGGTGCCGCCCGCCTCGCCGCCGATGGTGC

>NC_019670|5|5|4816901-4817001|CRISPRCasFinder
GCCCGCCTCGCCGCCGATGGCGC	AGACCATGTAGGCGCCGGCAAACTGGCTTCCGACGGCGCTGACCACACCGGTGCC
GCCCGCCTCGCCGCCGATGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019670.1\|WP_015096516.1\|4826387_4826804_+\|DNA-mismatch-endonuclease-Vsr	unknown	unknown	gnl\|CDD\|226250
NC_019670.1\|WP_007971015.1\|4808903_4809668_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226961
NC_019670.1\|WP_015096508.1\|4816302_4816566_+\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NC_019670.1\|WP_015096503.1\|4807663_4808656_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NC_019670.1\|WP_015096515.1\|4825579_4826293_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NC_019670.1\|WP_007978181.1\|4817558_4818806_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NC_019670.1\|WP_015096506.1\|4811504_4812194_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226670
NC_019670.1\|WP_015096507.1\|4813760_4815716_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NC_019670.1\|WP_015096502.1\|4802718_4807656_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NC_019670.1\|WP_008049550.1\|4812285_4813062_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NC_019670.1\|WP_015096511.1\|4819511_4820786_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_019670.1\|WP_007978167.1\|4829899_4830217_+\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015096518.1\|4828814_4829780_+\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015096514.1\|4824930_4825464_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NC_019670.1\|WP_015096513.1\|4821991_4824358_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019670.1\|WP_015096512.1\|4820981_4821989_-\|hypothetical-protein	unknown	unknown	unknown
NC_019670.1\|WP_015096510.1\|4818891_4819470_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
NC_019670.1\|WP_015096505.1\|4810809_4811508_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226634
NC_019670.1\|WP_015096504.1\|4809695_4810808_-\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349468
NC_019670.1\|WP_015096501.1\|4801188_4802409_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|179933

Protein	Function_ID	Function_description	E-value
NC_019670.1\|WP_015096516.1\|4826387_4826804_+\|DNA-mismatch-endonuclease-Vsr	gnl\|CDD\|226250	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair].	9.49221e-52
NC_019670.1\|WP_007971015.1\|4808903_4809668_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	1.92862e-170
NC_019670.1\|WP_015096508.1\|4816302_4816566_+\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	4.20362e-33
NC_019670.1\|WP_015096503.1\|4807663_4808656_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.65549e-108
NC_019670.1\|WP_015096515.1\|4825579_4826293_+\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	6.25413e-09
NC_019670.1\|WP_007978181.1\|4817558_4818806_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NC_019670.1\|WP_015096506.1\|4811504_4812194_-\|ABC-transporter-permease	gnl\|CDD\|226670	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism].	6.14336e-98
NC_019670.1\|WP_015096507.1\|4813760_4815716_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NC_019670.1\|WP_015096502.1\|4802718_4807656_+\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	5.20601e-11
NC_019670.1\|WP_008049550.1\|4812285_4813062_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.77453e-128
NC_019670.1\|WP_015096511.1\|4819511_4820786_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	8.56631e-65
NC_019670.1\|WP_015096514.1\|4824930_4825464_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.51306e-23
NC_019670.1\|WP_015096513.1\|4821991_4824358_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.0723e-13
NC_019670.1\|WP_015096510.1\|4818891_4819470_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	0.000147142
NC_019670.1\|WP_015096505.1\|4810809_4811508_-\|ABC-transporter-permease	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	1.90702e-105
NC_019670.1\|WP_015096504.1\|4809695_4810808_-\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349468	cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO. An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding P. aeruginosa AotO was characterized as part of an operon encoding an arginine and ornithine transport system, however it is not essential for arginine and ornithine uptake.	9.4459e-111
NC_019670.1\|WP_015096501.1\|4801188_4802409_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|179933	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase.	0

>NC_019670.1|WP_015096508.1|4816302_4816566_+|DUF2790-domain-containing-protein
MKALWVLALGSVCATAMASEVPTDVAQQQPPVEEYTYSMNLDIAKVISMSEAPNVCEVVPMKMEYEDSNGQRHILRYSAMGNGCSNG
>NC_019670.1|WP_015096507.1|4813760_4815716_-|acetate--CoA-ligase
MSAASLYPVRPEVLANTLTDEATYKAMYQQSVVNPDGFWREQAKRLDWIKPFTTVKQTSFDDHHVDIKWFADGTLNVSYNCLDRHLAERGDQVAIIWEGDDPAESRNITYRELHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAIHSVVFGGFSPEALAGRIIDCKSKVVITADEGIRAGKKIPLKANVDDALTNPETSSIQKVIVCKRTGGQIKWNQHRDIWFEDLMKVAGTVCAPKEMGAEEALFILYTSGSTGKPKGVQHTTGGYLLYAAMTHERVFDYRPGEIYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITRVAKIVDKHKVNILYTAPTAIRAMMASGTAAVEGADGSSLRLLGSVGEPINPEAWDWYYKNVGKSRCPIVDTWWQTETGGNMMSPLPGAHALKPGSAARPFFGVVPALVDNLGNIIEGEAEGNLVILDSWPGQARTLYGDHDRFVDTYFKTFRGMYFTGDGARRDADGYYWITGRVDDVLNVSGHRMGTAEIESAMVAHPKVAEAAVVGVPHDIKGQGIYVYVTLKNGEEPNEQLRLELKNWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIATAEYDGLGDISTLADPSVVQHLIDTHKTMNVA
>NC_019670.1|WP_008049550.1|4812285_4813062_-|ABC-transporter-substrate-binding-protein
MKKLVLLGALALSVLSLPSFADEKPLKIGIEAAYPPFASKAPDGSIVGFDYDIGNALCEEMKVKCVWVEQEFDGLIPALKVRKIDAILSSMSITEDRKKSVDFTNKYYNTPARLVMKAGTQVSEGLTELKGKNIGVQRGSIHERFAREVLAPLGAEIKPYGSQNEIYLDVAAGRLDGTVADATLLDDGFLKTDAGKGFAFVGPAFTDVKYFGDGVGIAVRKGDKAELDKLNAAIAAIRENGKYKQIQDKYFAFDIYGK
>NC_019670.1|WP_015096506.1|4811504_4812194_-|ABC-transporter-permease
MLKGYGAVILDGAWLTLQLALSSMAMAIVLGLIGVALRLSPVRWLAWLGDLYSTVIRGIPDLVLILLIFYGGQDLLNRVAPLLGFDEYIDLNPLAAGIGTLGFIFGAYLSETFRGAFMAIPKGQAEAGMAYGMSSFQVFFRVLVPQMIRLAIPGFTNNWLVLTKATALISVVGLQDMMFKAKQAADATREPFTFFLAVAAMYLVITSVSLLALRHLEKRYSVGVRAADL
>NC_019670.1|WP_015096505.1|4810809_4811508_-|ABC-transporter-permease
MIFDYNVIWEALPLYFGGLVTTLKLLALSLFFGLLCALPLGLMRVSKNPVVNMSAWLYTYVIRGTPMLVQLFLIYYGLAQFEAVRESFLWPWLSSATFCACLAFAINTSAYTAEIIAGSLRATPNGEIEAAKAMGMSRFKMYKRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDITGAARTVNAQFYLPFEAYITAGVFYLCLTFILVKLFKMAERRWLGYLAPRKH
>NC_019670.1|WP_015096504.1|4809695_4810808_-|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MERIDHALPWSHLGSERRISVFRFGSGERKAYIQASLHADELPGMRTAFELKKRLAELEAKGLLNGVVELVPVANPLGLGQLLQGNHQGRFEAGSGKNFNRDFVELSAPVAAALAESLGDDPHANIRLIRQAMVDHLAALPEASSQLQGMQRVLLSHACTADVVLDLHCDAEAALHMYALPQHWPQWRSLAAHLNVRVGLLAEDSGGSSFDEACSLPWLRLSRLFPDAQIPLACLATTIELGGQADTGRAEACAHAEGILAFLAEQGLISGEWPKPAQDPCEGMPFEGTELLLAPHPGVVSFLRKPGEWVEAGDEIFEVIDPLADRVSTVCAGTSGVLFAIERLRYAQPGFWLAKVAGREALRHGRLLND
>NC_019670.1|WP_007971015.1|4808903_4809668_-|ATP-binding-cassette-domain-containing-protein
MYKLEVQDLHKRYGSHEVLKGVSLKAAAGDVISIIGSSGSGKSTFLRCINLLEQPHAGKILLNNEELKLVANKDGALKAADPKQLQRMRSRLSMVFQHFNLWSHMTALENIMEAPVHVLGVSKAEAREKAEHYLNKVGVAHRKDAYPGHMSGGEQQRVAIARALAMEPEVMLFDEPTSALDPELVGDVLKVMQALAQEGRTMVVVTHEMGFAREVSNQLVFLHKGVVEESGNPREVLVNPQSERLQQFLSGSLK
>NC_019670.1|WP_015096503.1|4807663_4808656_-|GlxA-family-transcriptional-regulator
MTAHRIGFLIWPSTKALTLALAEEALRVAQRVHPDVVYELSFLQAEAITEAAADSAWQLPGEAWTGKLENFQKLFLLADEPPTALAPALSSALKQLVRSGCVIGGLSAGVYPLAQLGLLDGYRAAVHWRWQDDFAERFPKVIATSHLFDWDRDRLTACGGMSVLDLLLAVLARDHGAELAGAVSEELVVERIREGGERQRIPLQNRLGSSHPKLTQAVLLMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNKARQMLMQTSKSIIQIGLSCGFSSGPHFSSAYRNFFGATPREDRNQRRSSSPFELSSVPPERG
>NC_019670.1|WP_015096502.1|4802718_4807656_+|hypothetical-protein
MNTENPDIPETFRSDAHYQHLMNVIAPWLRQTTPKRREALRNIKPVLPSPIRDAPKDQHAELGRLITLQTTSQNRVDQALANLLNPADFAEPMLKGALKTRFGLEADVSKTFLRLYIPAHIPWLRLKSGAARTWTVSLLDAALHNFESAETEVDAFEPASTYITAPSSTGHFSTLPQILAKMPITAFTQLCRELDIGERYKRYLEDNLGISNPVAAAILQPKIRESQKTALTAALQMAQMQNLLASDVHQPLLRLLSDGHDLSWRCHDLTIMNARLTGIVLFAPELERARETVRVVAYIPDDPEHPIKQYPSSAAFAEELSQRLREPDYQQFFSRFINHEDRGYFFAELNNRLDPITWQPVPPGDPRPTWRENPNQRPDLQMAVTPIRGDLWVHLYQRKLDKILNDARVIAVSTATVDRKARWALWDSFTEIASALLNIAAFIALPFVPFLGELMLAYTAYQLLDDTFEGVVDWAEGLTNEAFEHFMGMVESAVQLGTFAAGGMIAVSEFRAVLPREVVQFIDRFNAVKRPNGETRYWKPDLTPYEQTVTTPNDAKPDSTGLHTHQGKTLLTLDNSRYSVTEDPLTGRHRIQHPTRPEAYKPTLRHNGKGAWHTELEQPLTWDQATLLRRIGPDMQRFSASERERILSISGCHENALRKMHVDAEQVPPLLADTLKRFKIDQDLQIFIDQIGSNRADDYLKADPLMQLELLCDYGNWPADKGLRLVDATGETLWERGVGNQVVVQINLAQLDDGDLINTLLQHLDNTDARSVRRYLTTLAADKRENLFSQRYRKIEQGARPLVQRIIDSEPGLPTSLAEALLDSASAAEREQLERGTLSKRLTELAQEAGLQVRVTRAYEGLYLYSTRNHLDTDRLALHTLERLPGWSGQLRLEIRQYTHNGPLIDSIGEPDAPLRKVLVLTDEGAYQAYDDAGEQLSSTDTLYSSLLQALPDSERIALNINIGEGERLKRLIRTHAVTREALRALLAQRPNLKPAYDPAVMRLLGGGDGYHRMPVNTPSLQSHIYRLFPHLSAEELQAFAARLQANPGGPRAELQRLFNQHAQLLEQLSTWCDEIPLYVPGTQIRLSVEQLASQRYARRQMIARLLDCWRRQATYDSTRGVPVSFEFSQPVVGELPKLNVDFPQVRSVTLEGHRATQGVNDFLKGFSSLDRLALRNFELGQLPDAIAQWPQLDALILSDCAVTLTEQSCATLSALNQLTALDLYKNPLGVCPSLENMPKLNYVDLSGTGITRIPEGLVNHPSIRTAILNDNQITELPTALFDLPGDISEGFDFGNNPLSPSTREHIKRHYQRTEKDFGVHAEQVDIDRVKALYPSLDNEEASDFVYRLPGTLAEGRADLTRRELELTRLGTELSRWTADVPDTHSDTGAPLTANEMFAEHVKRDEFKQNLERCWRQIPIENIAVGEYGFVSHLPILGDLPTLSADFSHVPEMYLTTTHGIAPGLGRFLDSFANLDTLTIRGYHLGNLPEAIFRMGRLSVLSLSECGITLTQETVEALAGMDSLDHLNLRNNPLGLSPDLSHMTEISSLDLSHTGITEIPKGVLSITTWTDVDLSFNAITEMPPELMEVDPGVGESFDFSGNPFNAQSLQRIAAYFRATENDLGIDEIADMPVPEDGAPDTDIED
>NC_019670.1|WP_015096501.1|4801188_4802409_-|aspartate-aminotransferase-family-protein
MSVEHAAVQRADFDQVMVPNYAPAAFIPVRGAGSRVWDQSGRELIDFAGGIAVNVLGHAHPALVGALTEQANKLWHVSNVFTNEPALRLAHKLVDATFADRAFFCNSGAEANEAAFKLARRVGFDRFGSEKYEIIAALNSFHGRTLFTVNVGGQSKYSDGFGPKITGITHVPYNDLAALKAAISDKTCAVVLEPIQGESGVIPAELEYLQGARELCTAHNALLIFDEVQTGMGRTGHLFAYQHYGVTPDILTSAKSLGGGFPIAAMLTTEELAKHLVVGTHGTTYGGNPLACAVAEAVIDVINTPEVLAGVKAKHDKFKARLEQIGEKYGLFTKVRGMGLLIGCVLSDAWKGKAKDIFNAAEKEGLMVLQAGPDVVRFAPSLVVEDADIDAGLDRFERAAAKLTQA
>NC_019670.1|WP_007978181.1|4817558_4818806_+|ribonucleotide-diphosphate-reductase-subunit-beta
MLSWDEFDKEDTEVAVKSANAGHATEANMDRLDSAGGAAALEARAVTAADSAAVARAKAALDSLDVAEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD
>NC_019670.1|WP_015096510.1|4818891_4819470_+|HNH-endonuclease
MDEHKLNLIDKQLSLILSIKNNRSDKWALRLWSRYIKARDQYKCVVCSSKEKIQAHHIFRRSLYPHGWFQPGNGITLCFTCHNRQHATFNGSPNLNMPVDMEGGDNLDDASYYIYSLIKDAHLQKLAHNEFYYIDDHMLVFFMKLQSCMHMTKFLNDEKYSKLELAHEIWRTAPSKMIRALIKANIPQWAIL
>NC_019670.1|WP_015096511.1|4819511_4820786_-|DNA-cytosine-methyltransferase
MRFIDVFAGCGGLSLGLLKAGCQGVAAIEKNPMAFQTLKHNLIDGDRYRFNWPSWLPIEAMSCEAFLENYKSHLLKLAGTIDLMVGGPPCQGFSTAGRRNPEDPRNKMAEQYLELVKIIRPNFIVIENVSGFNSRFTRKNSDAEVDGKYITQSYADFICESLSSLGYAVSRGKINCADFGVPQNRHRYLIVCSLVDCEDLFQRLRDSSVRFKALKGLDVNKATTVRDAIFDLETTSKVLVDNSDSGVRGFRELDYTLPLVLSPYLKLMRDGFSGVPNSMRLPNHKAKTIEQFESIRQMAVPGKSISKASREFLGLKKHAITVLTSGEPSPTITTLPDDIIHYSENRILTARESARIQSFPDWFEFTGKYTTGGAARKFDCPRYTQVGNAVPPLLSEAIGNMIRAASADQRSKKLAEVDSKSCCV
>NC_019670.1|WP_015096512.1|4820981_4821989_-|hypothetical-protein
MMHLEYRILWFEDQIANIKPYQDNIRNAISRLGFNPKIETREVVTGAGDPLADLPLSRDVDLVMMDWKLGGGFDGAKLAKRLKVYYRDTDMVFYSSESAATLRRLIFDQDIDGVFCFHRTNLSDRTIGLVQSQLRKMLDLNHMRGIVMAATSDLDQAMIECLEKIQPLISAEDKDAFVKGIGTKISESLRSKANEIDRLMERGRLDKLLKEPSFGAALRLSILQDEIAKIADRISEVHLLERLALYRDEVIGPRNDFAHRRAVLANDQLVLEGRTQPFTQESMIALRLKLLSHFDNLSGLISLLAELGESPSSSQSAVLQDIKEDLMGAIVNPDS
>NC_019670.1|WP_015096513.1|4821991_4824358_-|sensor-histidine-kinase
MENGRQLRSDGSVLHFKVSSALKTLIGRDLITDEFVAIFELVKNSFDARATRVDILFDQGRVYIADNGKGMSFDDIRDKWLFVAYSAKGDGTEDLDYREQINSSKSYAGSKGVGRFSCDRLGRTLFMQTKTALASQFEIVEVEWDLFEGNSKDEIATIPLFHSTRAAIEVPKSLSWFEFGTILEVGELREVWSREKYLKLRSALAKLINPFGGGDGFEINLTVPEEEKGDISVLSDLKSGDEVNPLYLVNGPIQNFIFETLKDKTTHLQVEISDGGSYITSILTDRSEMIYKVREKNPYPLLKEASFNSNLYYLNRSAKQTFSRRMGVPSVRFGSIFLFKNGFRVFPIGEEGVDTFGIDRRKQQGYARFLGTRDVIGRIDIIGVDDRFRESTSRDQGLIDTPAYRQLVDCFEDKCFKRLERYVVGVNWKDALDLDVEDTSRIRGEAASARITAIVAQLAGGEGVELLDFSRELIRILNERSDDFKESLAGLRTLAEKSGDKNLLEELDAASYRYNELQRAEAAARDIADRERTARRDAERNAAESAQRADAATKSYEEERKRNLFLTSISNLDKDTIEILHHQIIIHASAVNEIINGQFDRLRHDRDFSIDDVKVALENISFQNRKILSIARFATKANFRMESETITDDLVSYIEQYINQVAPMLAETGISISVINNAKSLVRTFKPIEISIMIDNFISNAGRAEADKIVFSLRQISVKELQINAVDNGRGFDAGIVDLNRLFEKGYSTSTGSGLGLYHVQQIIDSLGGSIAAERGGSGAEFVLRIKG
>NC_019670.1|WP_015096514.1|4824930_4825464_+|Bro-N-domain-containing-protein
MPDLHNPTVFTRYTLALHTLLLENQPWFCARDIGRLMGVHLSDRMVSKLDKDQRRILWIEYFRKPEKQLMLSESGVYALLVYHYIPENRLLREWLTNQVVPALRDAEPQGSSDRPMLSLLDWPEMSLSMLYWQDEGWIRLRDVPYLLHDQPQRRSTVVKPWWRRVAQVFQSSKHSMG
>NC_019670.1|WP_015096515.1|4825579_4826293_+|HNH-endonuclease
MDIETNNTDWSVTELEAAVDAYLKMLELEKSGQKFNKAHVNRVLREGALSGRTEGSVEFRMLNISTVLERMGKKRIHGYKPAPHVGSNVENAIRDVLADRGILAGDESSPTADEETLERRAAVLQKQKFEHVPKGILKPKKAPSSSTTYVRDPEVRAWVRNEAEGHCEGCGQPAPFQKRGLPYLEVHHVKPLAEKGSDRTTNAVALCPNCHQRCHHSNDRAEYTESLYSRIERLLRE
>NC_019670.1|WP_015096516.1|4826387_4826804_+|DNA-mismatch-endonuclease-Vsr
MCADTVTAEQRSKLMARIKGKNTKPEMIVRSICHAMGLRFRLHRRDLPGTPDLVFPKHRLCLFVHGCFWHRHGCKYASTPKTRPEYWTQKFDTNASRDERCINKLKLMDWRVDVIWECELKDLNRIKERIQLLTMHAH
>NC_019670.1|WP_015096518.1|4828814_4829780_+|hypothetical-protein
MKFDLAYCLSLNDKLSIYDVRDLNFDETMDFDSAREHFQCPNDACRLAFDAANELGTFNAKNVNYVRTPHFKNLPSTRHVEGCPYVSLKAPASGVEEAETDDSREENFPSELLLTRREYVRKPSSPEVIADVVRDEPVAPKGASNIEQPGKESAPDKTSVFAHPVECFVSNFDDKDLLKRVPLKIGEHTAPYGSFFKKIEYLQDNKGLIYWGKVKEIKDYTQSFRIDFEKKVWFEKRPYSVNVYLSKKLIDSYRKRKAFLEEIKHAIESGRELYCFFYGVTPELKQVPSKKNPEQTFGVFSANIENLDHFIVREAPGLADK
>NC_019670.1|WP_007978167.1|4829899_4830217_+|hypothetical-protein
MASQAMKITLERIALFQFTPAHCAQARAMLGWSVEELSRESRVSVEAIQRFEARQEVLDVTRLALAYRFESEGLVFFPGFAPGRGMNVKGSTPNPVGRADFAMVE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1324270 : 1331836

Pseudomonas_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015093782.1\|1324270_1325128_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_007990225.1\|1325233_1326241_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_007970729.1\|1326712_1327036_-	ferredoxin family protein	NA	NA	NA	NA
WP_015093783.1\|1327178_1329758_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	23.3
WP_083884609.1\|1329959_1330703_+	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	2.3e-129	92.3
WP_015093785.1\|1330877_1331219_+	pyocin	B5TK61	Pseudomonas_phage	3.0e-39	67.6
WP_015093786.1\|1331335_1331836_+	CinA family protein	B5TK85	Pseudomonas_phage	8.2e-70	83.1

DBSCAN-SWA_2

2163733 : 2169999

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015094401.1\|2163733_2165014_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-98	54.2
WP_015094402.1\|2165014_2166409_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_015094403.1\|2166526_2167528_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_015094404.1\|2167619_2168621_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.7e-163	85.1
WP_015094405.1\|2168617_2168953_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.6e-45	79.3
WP_015094406.1\|2168949_2169243_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	8.9e-32	69.7
WP_015094407.1\|2169242_2169605_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.8e-42	69.2
WP_007977064.1\|2169606_2169999_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.9e-53	80.6

DBSCAN-SWA_3

5713321 : 5758937

Burkholderia_phage(40.0%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015097118.1\|5713321_5713828_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_015097119.1\|5713992_5714880_+	acyltransferase	NA	NA	NA	NA
WP_015097120.1\|5714881_5715442_-	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_015097121.1\|5715662_5716862_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.7e-10	27.4
WP_015097122.1\|5717082_5717940_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_015097123.1\|5718090_5718723_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_015097124.1\|5718870_5721888_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_007980417.1\|5721884_5722214_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_007980419.1\|5722229_5723480_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
WP_015097125.1\|5723503_5724757_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.3e-100	53.0
WP_041475086.1\|5725040_5725769_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_015097127.1\|5725913_5726954_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_015097128.1\|5727140_5727353_+	hypothetical protein	NA	NA	NA	NA
WP_015097129.1\|5727594_5728002_+	hypothetical protein	NA	NA	NA	NA
WP_015097130.1\|5728225_5729050_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_015097131.1\|5729177_5730278_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_015097132.1\|5730561_5731857_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_041474966.1\|5732632_5733853_-\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_015097134.1\|5734025_5734592_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015097135.1\|5734740_5735511_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_015097136.1\|5735526_5736747_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_015097137.1\|5736746_5738690_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_007975506.1\|5738844_5740905_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_007975505.1\|5740920_5741451_-	hypothetical protein	NA	NA	NA	NA
WP_015097138.1\|5741529_5742507_-	dipeptidase	NA	NA	NA	NA
WP_015097139.1\|5742731_5743133_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_015097140.1\|5743346_5743601_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.3e-23	63.1
WP_015097141.1\|5743584_5743908_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.3e-31	67.6
WP_015097142.1\|5743940_5744357_+	DUF3010 family protein	NA	NA	NA	NA
WP_015097143.1\|5744488_5745433_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_015097144.1\|5745658_5746603_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_007985953.1\|5746698_5747586_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_015097145.1\|5747728_5748694_+	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_015097146.1\|5748858_5749335_+	thioesterase family protein	NA	NA	NA	NA
WP_015097147.1\|5749348_5750512_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_007995656.1\|5750897_5751164_+	hypothetical protein	NA	NA	NA	NA
WP_007975492.1\|5751276_5752380_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_144443143.1\|5752875_5753931_-	hypothetical protein	NA	NA	NA	NA
WP_007995657.1\|5754079_5755456_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_015097149.1\|5755891_5756839_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041474967.1\|5756916_5757762_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_015097151.1\|5757758_5758937_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019670

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection