CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019675	Cyanobium gracile PCC 6307, complete sequence	0 crisprs	DEDDh,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1366079 : 1420409

Agrobacterium_phage(28.57%)

transposase,integrase,tRNA,protease

attL 1382755:1382771|attR 1423185:1423201

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015108982.1\|1366079_1366751_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.3e-30	38.7
WP_015108983.1\|1366868_1367480_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.8e-42	49.7
WP_015108984.1\|1367555_1368551_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_051017208.1\|1368800_1369796_+	cobalamin biosynthesis protein CobD	NA	NA	NA	NA
WP_015108987.1\|1369820_1370537_-	sugar transferase	NA	NA	NA	NA
WP_015108988.1\|1370602_1371796_-	glycosyltransferase	NA	NA	NA	NA
WP_015108989.1\|1371903_1372146_+	hypothetical protein	NA	NA	NA	NA
WP_015108990.1\|1372277_1374275_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_156818570.1\|1374374_1376057_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_015108992.1\|1376075_1376960_-	Na+-dependent transporter	NA	NA	NA	NA
WP_015108993.1\|1376965_1377352_-	DUF202 domain-containing protein	NA	NA	NA	NA
WP_015108994.1\|1377352_1377772_-	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_051017209.1\|1377775_1378663_-	formylglycine-generating enzyme family protein	NA	NA	NA	NA
WP_015108996.1\|1378763_1380269_-	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	3.7e-166	55.8
WP_015108997.1\|1380390_1381371_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015108999.1\|1382440_1382623_-	hypothetical protein	NA	NA	NA	NA
WP_015109000.1\|1382619_1383498_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
1382755:1382771	attL	NA	NA	NA	NA
WP_015109001.1\|1383600_1384302_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_043326697.1\|1384336_1384648_-	hypothetical protein	NA	NA	NA	NA
WP_015109003.1\|1384740_1385538_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_015109004.1\|1385581_1385794_+	DUF2862 domain-containing protein	NA	NA	NA	NA
WP_015109005.1\|1385807_1386824_+	chlorophyll synthase ChlG	NA	NA	NA	NA
WP_015109006.1\|1386820_1389013_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_043326703.1\|1389009_1390404_-	16S rRNA (cytosine(967)-C(5))-methyltransferase	NA	NA	NA	NA
WP_051017063.1\|1390424_1390751_-	MGMT family protein	NA	NA	NA	NA
WP_051017065.1\|1391168_1391867_+	hypothetical protein	NA	NA	NA	NA
WP_015109010.1\|1391878_1392541_+	hypothetical protein	NA	NA	NA	NA
WP_015109011.1\|1392537_1393392_+	hypothetical protein	NA	NA	NA	NA
WP_015109012.1\|1393412_1394102_+\|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	NA	NA	NA	NA
WP_015109013.1\|1394043_1394322_-	hypothetical protein	NA	NA	NA	NA
WP_043325513.1\|1394382_1395201_-	ABC transporter permease	NA	NA	NA	NA
WP_015109015.1\|1395708_1396404_+	response regulator transcription factor	NA	NA	NA	NA
WP_015109016.1\|1396406_1397123_+	response regulator transcription factor	NA	NA	NA	NA
WP_051017069.1\|1397091_1398087_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-19	28.3
WP_083891429.1\|1398821_1399208_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A0E3FQD0	Synechococcus_phage	4.8e-09	47.5
WP_015109019.1\|1399462_1401634_+	hypothetical protein	NA	NA	NA	NA
WP_071881560.1\|1402588_1402960_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_071881561.1\|1403005_1403203_-	hypothetical protein	NA	NA	NA	NA
WP_051017071.1\|1403495_1403792_-\|transposase	transposase	NA	NA	NA	NA
WP_015109021.1\|1404327_1405692_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015107827.1\|1407692_1408862_-\|transposase	IS3 family transposase	A4JX31	Burkholderia_virus	7.4e-13	37.6
WP_015109023.1\|1409114_1409744_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_015109024.1\|1409853_1410081_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_015109025.1\|1410080_1410458_+	DUF5615 family PIN-like protein	NA	NA	NA	NA
WP_015109026.1\|1410693_1410972_-	hypothetical protein	NA	NA	NA	NA
WP_015109027.1\|1411046_1411625_-	hypothetical protein	NA	NA	NA	NA
WP_015109028.1\|1411656_1412151_-	hypothetical protein	NA	NA	NA	NA
WP_015109029.1\|1412137_1412542_-	hypothetical protein	NA	NA	NA	NA
WP_015109030.1\|1413790_1414348_-	hypothetical protein	NA	NA	NA	NA
WP_015109031.1\|1414398_1415019_+	hypothetical protein	NA	NA	NA	NA
WP_156818409.1\|1415379_1416993_+	hypothetical protein	NA	NA	NA	NA
WP_172637159.1\|1417679_1418171_+	hypothetical protein	NA	NA	NA	NA
WP_172637160.1\|1418278_1419220_+	hypothetical protein	NA	NA	NA	NA
WP_156818410.1\|1419478_1420409_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	9.0e-78	50.8
1423185:1423201	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2108215 : 2114174

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015109733.1\|2108215_2108971_+	ribonuclease III	A0A1V0SC60	Catovirus	2.8e-05	25.9
WP_015109734.1\|2108948_2109128_-	DUF3252 domain-containing protein	M4QFU1	Prochlorococcus_phage	5.4e-08	53.7
WP_156818447.1\|2109239_2109830_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_015109736.1\|2109933_2111544_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	7.3e-51	28.9
WP_015109737.1\|2111504_2113403_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HTS9	Paramecium_bursaria_Chlorella_virus	1.8e-96	37.6
WP_007099573.1\|2113536_2113782_-	photosystem I iron-sulfur center protein PsaC	C7EDU4	uncultured_marine_virus	2.5e-24	93.8
WP_015109738.1\|2113931_2114174_+	acyl carrier protein	E3SSM9	Prochlorococcus_phage	2.5e-08	60.7

DBSCAN-SWA_3

2195100 : 2203486

Staphylococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015109817.1\|2195100_2196231_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	C7U074	Ostreococcus_tauri_virus	2.5e-21	25.1
WP_015109818.1\|2196234_2197476_-	class I SAM-dependent methyltransferase	A0A1V0SJ68	Klosneuvirus	1.4e-25	29.7
WP_015109819.1\|2197472_2198021_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	H9NC63	Sphingomonas_phage	1.6e-13	35.7
WP_083891381.1\|2198022_2199045_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015109821.1\|2199076_2200339_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-10	25.9
WP_015109822.1\|2200335_2201154_-	ABC transporter permease	NA	NA	NA	NA
WP_015109823.1\|2201206_2201395_-	photosystem II reaction center protein PsbZ	NA	NA	NA	NA
WP_015109824.1\|2201481_2202096_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-46	50.5
WP_015109825.1\|2202092_2203001_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.4e-91	56.4
WP_015109826.1\|2202997_2203486_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.1e-29	52.0

DBSCAN-SWA_4

2847373 : 2857196

uncultured_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051017239.1\|2847373_2849725_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-57	29.0
WP_015110446.1\|2849721_2850375_+	dTMP kinase	A0A1L2BX49	Bacteriophage	4.6e-28	46.6
WP_015110447.1\|2850367_2851339_+	hypothetical protein	NA	NA	NA	NA
WP_015110448.1\|2851347_2852145_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-36	38.7
WP_015110449.1\|2852452_2853163_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-12	34.1
WP_015110450.1\|2853159_2853423_-	hypothetical protein	NA	NA	NA	NA
WP_015108802.1\|2853604_2854663_+	photosystem II D2 protein (photosystem q(a) protein)	A0A1D8KTI0	Synechococcus_phage	1.8e-199	97.9
WP_015110451.1\|2855156_2857196_-	acyltransferase	W6MVL2	Pseudomonas_phage	2.4e-35	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage