CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019680	Synechococcus sp. PCC 6312, complete sequence	5 crisprs	RT,cas3,cas2,cas1,cas5,cas7,cas8b3,cas6,WYL,cas4,DEDDh,csa3,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,c2c9_V-U4,Cas9_archaeal,DinG	0	6	2	0
NC_019681	Synechococcus sp. PCC 6312 plasmid pSYN6312.01, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019680_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019680_1

1105084-1107482

Orphan

I-A,I-B,II-B

Consensus_repeat	Method
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CRISPRCasFinder
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CRT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACT	PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	PILER-CR

33 spacers

The CRISPR arrays of NC_019680_1

>merge|NC_019680|1|1105084-1107482|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACATCAATACCCCAATCGGTGTTTCCACTTTATAGGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAGGAACACGCCACCGATAGGTAACAAAATCAATTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACCCACAAAGGTCTAGGGATTTTTTAATACTCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTTACTAAATTCAGATGGGTGAATCATCTTTTTTGCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACATCAATACCCCAATCGGTGTTTCCACTTTATAGGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACCCACAAAGGTCTAGGGATTTTTTAATACTCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGGGAACTCAGTCACAGGATAGGGTAGCGGGATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAGTCCACTCGCTCACTGACGATCAACTGATTGCCCAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTTCTTGACTGCTAACGAATCACTGACTTTATACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACTAATTATGCTAATCCCATAACCAATCGAGGTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATAAGTGCCGGGGTATCTTGACTTCCCCAGAACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGGATAGCGGGGGAAATTTGGAAACTATTCACCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAGGCCAGCATTACCCGAGCGCAAAACCGGATCAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAAAATGTTAGTAACTCTATCAAAGTGCAACTTAACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATAGATAACCTTCAGGAAAACTCCAATTTAATACTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAAAAGGGTTTCCATTTTTGTTAACTGCGTACACTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAGCGACATCGGCAATAAACTTGAGTTATCAGAGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTGTTCATCCTGGCTAATCAAAGGCTCATGAGCATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATTTGGGAAGATGTCTCGTCAATTTCTACCCCAATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|1|1|1105084-1105621|PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGAACACGCCACCGATAGGTAACAAAATCAATTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTACTAAATTCAGATGGGTGAATCATCTTTTTTGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACATCAATACCCCAATCGGTGTTTCCACTTTATAGGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACCCACAAAGGTCTAGGGATTTTTTAATACTCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGGGAACTCAGTCACAGGATAGGGTAGCGGGATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACA	GTCCACTCGCTCACTGACGATCAACTGATTGCCCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACT	TTCTTGACTGCTAACGAATCACTGACTTTATAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACTAATTATGCTAATCCCATAACCAATCGAGGTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATAAGTGCCGGGGTATCTTGACTTCCCCAGAACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGATAGCGGGGGAAATTTGGAAACTATTCACC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGGCCAGCATTACCCGAGCGCAAAACCGGATCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAAATGTTAGTAACTCTATCAAAGTGCAACTTAAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAGATAACCTTCAGGAAAACTCCAATTTAATACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AAAAGGGTTTCCATTTTTGTTAACTGCGTACACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGCGACATCGGCAATAAACTTGAGTTATCAGAGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTTCATCCTGGCTAATCAAAGGCTCATGAGCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTTGGGAAGATGTCTCGTCAATTTCTACCCCAAT


>NC_019680|1|1|1105084-1107482|CRISPRCasFinder
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGAACACGCCACCGATAGGTAACAAAATCAATTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTACTAAATTCAGATGGGTGAATCATCTTTTTTGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGGAACTCAGTCACAGGATAGGGTAGCGGGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTCCACTCGCTCACTGACGATCAACTGATTGCCCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTCTTGACTGCTAACGAATCACTGACTTTATAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACTAATTATGCTAATCCCATAACCAATCGAGGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTCAACGTGCCTATTTCAAAACGCGCCATCATTAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTCAACGTGCCTATTTCAAAACGCGCCATCATTAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAAGTGCCGGGGTATCTTGACTTCCCCAGAACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGATAGCGGGGGAAATTTGGAAACTATTCACC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGGCCAGCATTACCCGAGCGCAAAACCGGATCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAAATGTTAGTAACTCTATCAAAGTGCAACTTAAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAGATAACCTTCAGGAAAACTCCAATTTAATACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AAAAGGGTTTCCATTTTTGTTAACTGCGTACACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGCGACATCGGCAATAAACTTGAGTTATCAGAGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTTCATCCTGGCTAATCAAAGGCTCATGAGCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTTGGGAAGATGTCTCGTCAATTTCTACCCCAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|1|1|1105084-1107482|CRT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGAACACGCCACCGATAGGTAACAAAATCAATTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTACTAAATTCAGATGGGTGAATCATCTTTTTTGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGGAACTCAGTCACAGGATAGGGTAGCGGGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTCCACTCGCTCACTGACGATCAACTGATTGCCCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTCTTGACTGCTAACGAATCACTGACTTTATAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACTAATTATGCTAATCCCATAACCAATCGAGGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTCAACGTGCCTATTTCAAAACGCGCCATCATTAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTCAACGTGCCTATTTCAAAACGCGCCATCATTAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAAGTGCCGGGGTATCTTGACTTCCCCAGAACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGATAGCGGGGGAAATTTGGAAACTATTCACC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGGCCAGCATTACCCGAGCGCAAAACCGGATCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAAATGTTAGTAACTCTATCAAAGTGCAACTTAAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAGATAACCTTCAGGAAAACTCCAATTTAATACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AAAAGGGTTTCCATTTTTGTTAACTGCGTACACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGCGACATCGGCAATAAACTTGAGTTATCAGAGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTTCATCCTGGCTAATCAAAGGCTCATGAGCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTTGGGAAGATGTCTCGTCAATTTCTACCCCAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|1|2|1105798-1105976|PILER-CR
	CTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGAACACGCCACCGATAGGTAACAAAATCAATTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTACTAAATTCAGATGGGTGAATCATCTTTTTTGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACATCAATACCCCAATCGGTGTTTCCACTTTATAGGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACCCACAAAGGTCTAGGGATTTTTTAATACTCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGGGAACTCAGTCACAGGATAGGGTAGCGGGATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACA	GTCCACTCGCTCACTGACGATCAACTGATTGCCCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACT	TTCTTGACTGCTAACGAATCACTGACTTTATAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACTAATTATGCTAATCCCATAACCAATCGAGGTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATAAGTGCCGGGGTATCTTGACTTCCCCAGAACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGATAGCGGGGGAAATTTGGAAACTATTCACC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGGCCAGCATTACCCGAGCGCAAAACCGGATCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAAATGTTAGTAACTCTATCAAAGTGCAACTTAAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAGATAACCTTCAGGAAAACTCCAATTTAATACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AAAAGGGTTTCCATTTTTGTTAACTGCGTACACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGCGACATCGGCAATAAACTTGAGTTATCAGAGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTTCATCCTGGCTAATCAAAGGCTCATGAGCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTTGGGAAGATGTCTCGTCAATTTCTACCCCAAT


>NC_019680|1|3|1106226-1107482|PILER-CR
	CTCTTGCCGAAATGGTTGACTGGATTTGTGACAATCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATCAATACCCCAATCGGTGTTTCCACTTTATAGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGAACACGCCACCGATAGGTAACAAAATCAATTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTGGCAGTGGTAGCCGCATTTCCATCGTCATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCCACAAAGGTCTAGGGATTTTTTAATACTCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTACTAAATTCAGATGGGTGAATCATCTTTTTTGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGTCTGGGGAAATAGTCTCTTTGTACGAAGCTCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACATCAATACCCCAATCGGTGTTTCCACTTTATAGGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACCCACAAAGGTCTAGGGATTTTTTAATACTCTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGGGAACTCAGTCACAGGATAGGGTAGCGGGATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACA	GTCCACTCGCTCACTGACGATCAACTGATTGCCCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACT	TTCTTGACTGCTAACGAATCACTGACTTTATAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACTAATTATGCTAATCCCATAACCAATCGAGGTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCTCAACGTGCCTATTTCAAAACGCGCCATCATTATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAATAAGTGCCGGGGTATCTTGACTTCCCCAGAACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGTAACCCAAATTAAAGAGCTAATAAAAGAATCTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGATAGCGGGGGAAATTTGGAAACTATTCACC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGGCCAGCATTACCCGAGCGCAAAACCGGATCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAAATGTTAGTAACTCTATCAAAGTGCAACTTAAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGGCGGGTTGCCAGAATTGCTATGCCATCAACCAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATAGATAACCTTCAGGAAAACTCCAATTTAATACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AAAAGGGTTTCCATTTTTGTTAACTGCGTACACTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGTTAATCTCATCATTGAGCTTGTAGGGAATAAAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTAAGGAAGCAACTCTCAAATTCTCTGCCTGGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAGCGACATCGGCAATAAACTTGAGTTATCAGAGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCTCGATTTTCGAGTACGGTCGTATTGTTTTACTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTGGGTTTGAGGGCAATAATGGCAATGATGGAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGTTCATCCTGGCTAATCAAAGGCTCATGAGCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACGGATGTCTTATGAAAAGCTGCTTTGGTTTATCTGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCTATCAATGGATTTGTGATTGAGTTAGCCAAAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AATTTGGGAAGATGTCTCGTCAATTTCTACCCCAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019680.1\|WP_015123863.1\|1107757_1108006_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123870.1\|1113154_1113877_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NC_019680.1\|WP_015123857.1\|1097037_1097421_+\|DUF1634-domain-containing-protein	unknown	unknown	gnl\|CDD\|377927
NC_019680.1\|WP_015123868.1\|1110528_1112793_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_019680.1\|WP_015123867.1\|1110297_1110519_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NC_019680.1\|WP_041430630.1\|1104478_1104940_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123861.1\|1100542_1100947_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_019680.1\|WP_083853493.1\|1103962_1104418_+\|transposase	unknown	unknown	gnl\|CDD\|315923
NC_019680.1\|WP_051020969.1\|1103614_1103851_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379282
NC_019680.1\|WP_015123862.1\|1101123_1103292_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_019680.1\|WP_041430633.1\|1114402_1114783_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123865.1\|1109096_1109675_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|197617
NC_019680.1\|WP_015123864.1\|1108140_1109100_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123856.1\|1096201_1097041_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_019680.1\|WP_015123858.1\|1097575_1098748_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|180947
NC_019680.1\|WP_015123859.1\|1098775_1099216_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_172636038.1\|1109824_1110151_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_019680.1\|WP_015123869.1\|1112818_1113103_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_083853556.1\|1099298_1100177_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239591
NC_019680.1\|WP_156804740.1\|1113885_1114413_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019680.1\|WP_015123870.1\|1113154_1113877_+\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	9.88611e-12
NC_019680.1\|WP_015123857.1\|1097037_1097421_+\|DUF1634-domain-containing-protein	gnl\|CDD\|377927	pfam07843, DUF1634, Protein of unknown function (DUF1634). This family contains many hypothetical bacterial and archaeal proteins. A few members of this family are annotated as being putative transmembrane proteins, and the region in question in fact contains many hydrophobic residues.	3.90528e-28
NC_019680.1\|WP_015123868.1\|1110528_1112793_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.50432e-19
NC_019680.1\|WP_015123867.1\|1110297_1110519_+\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	1.84069e-16
NC_019680.1\|WP_015123861.1\|1100542_1100947_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	3.01246e-18
NC_019680.1\|WP_083853493.1\|1103962_1104418_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.56109e-17
NC_019680.1\|WP_051020969.1\|1103614_1103851_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|379282	pfam13592, HTH_33, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.07983e-10
NC_019680.1\|WP_015123862.1\|1101123_1103292_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_019680.1\|WP_015123865.1\|1109096_1109675_-\|J-domain-containing-protein	gnl\|CDD\|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	5.38559e-07
NC_019680.1\|WP_015123856.1\|1096201_1097041_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.38264e-27
NC_019680.1\|WP_015123858.1\|1097575_1098748_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|180947	PRK07366, PRK07366, LL-diaminopimelate aminotransferase.	0
NC_019680.1\|WP_172636038.1\|1109824_1110151_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	2.41381e-06
NC_019680.1\|WP_083853556.1\|1099298_1100177_-\|fatty-acid-desaturase	gnl\|CDD\|239591	cd03514, CrtR_beta-carotene-hydroxylase, Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	5.06764e-77

>NC_019680.1|WP_041430630.1|1104478_1104940_+|hypothetical-protein
MPATNRSYIIHSNNGLSGKVFLPPNEDFNPGDWIEIIYSYRDDLFVFGNERQMIVAAEELTDLYWNNTASSASVFYYNPDIKRYYGAAYPKLQGESESCKSRDIVKLVCANILEQVFFFPTTDSDGDYTTSPLTPETVNGCNVWIAFHYNSSP
>NC_019680.1|WP_083853493.1|1103962_1104418_+|transposase
MQVPIKNIKERQTYYGAINYVTGHLIVKPYSSGNSQNMIQFLKGIKAIHPNQKVIVIWDGAAYYSSHDFRNYLHQVNEDKPEQEWPIRCIKLAPYVPKQNPIEAVWSQVKNFLRNMCHLLKTFKITKWLFELFLSHFVLHSSHVNMYGTFS
>NC_019680.1|WP_051020969.1|1103614_1103851_+|winged-helix-turn-helix-domain-containing-protein
MTEVEKQQVLDWLKQQNYWNLEELEEYILETFNVVYSVKSSHYNFLHKAGLSCQKAQVTHPLKDRDQVALKKEICQYL
>NC_019680.1|WP_015123862.1|1101123_1103292_+|glycine--tRNA-ligase-subunit-beta
MAANSDPRADFLLEVGTEELPAAFVSSAISQWQQRIPPDLAAQGLTPARIEIFGTPRRLAVLIPGLEIHPPDQIEDIKGPSVTAAYKDGEPTKALLGFLKSKGASLEDITVKQTEKGEFIYLTQTKSAKPTGELLQAWVLDWISKLEGKRLMRWGDGDFRFSRPIRWLVALWQEQVLPIRISNGSGEIVSGDFSYGHRVLHPGPVNITQAKDYASILRAAFVEVEPTQRETLIKEQIEAVAKTVQGTAEIPDDLLAEVVQLVEWPTALLGNFEPEFLQLPPEVITTVMVTHQRYFPVYDKNNKLLPHFITISNGDPAASETIRLGNERVIRARLADGKFFYDADLSQPLEAYLLKLETVTFQDELGSMAVKVERIKTIASEIAVNLDLNDHQKLIIDKTAQLCKADLVTQLVGEFPELQGRMGEIYAQAGGESDLVAKGIFEHYLPQGAGDALPTTITGQVVAIADKLDTVVSIFGLGRIPTGSSDPFALRRAANGIINIIWSAKLPLNLGQLLKQTISNFTQAFPKATQAEPLTTQLQDFFGQRLRSLLLDEQGIDYDLVNAVLGEDNPTLIQRGLGDVVDVLVRAKFLQTIRHDGRMTQIYETVNRATRLARQGDLAADCLDVKAVINLKALKQPIETEFYQALTQQLPHVQTAQDTCNYTLLLDALTALSPTVSRFFDGPDSVLVMDEDATIRQNRLNLLGLVRNAASGLGDFGAIVKQ
>NC_019680.1|WP_015123861.1|1100542_1100947_-|GFA-family-protein
MEGKCLCGAITVQTPDKTSLDACHCGMCRRWGGGPALGISCGTDVELAGIEKLKVYQSSDWAERAFCGECGSHIYYKLLPTQEYFLPAGLFPDSINFEFTEQIFIDMKPSYYEFANQTVNLTEAEILAKFANLL
>NC_019680.1|WP_083853556.1|1099298_1100177_-|fatty-acid-desaturase
MFIAAISLAVISTVGHFQWDWPAWCTFGVNIVALHLVGTVIHDASHNVAHRNPLVNAVLGHGSALMLGFVFPVFTRVHIQHHAHVNDPENDPDHYVSKGGPLWLIAPRFFYHEIFFFKRRLWRNHELWEWAISRGLLITVVTLAAMHGHLDYVLNFWFSPAGVVGLMLGLFFDYFPHRPHVERNRWHNARVYPSPILNFLILGQNYHLIHHLWPSIPWYKVQPAYYSVKPLLDAKGCKQTLGIFEPGNVGPFLYDALIGIHWPHSTSLPSHTQLNIPVPESHPEPQRSSVKL
>NC_019680.1|WP_015123859.1|1098775_1099216_-|hypothetical-protein
MRIIQQSATRLVLRQRLVGLRYLCAFCAGLGLFLFLGYESPVDGIGLIGLTTAGLGYQLTAQEDCTLNRETGLLTLRNSLGRKSYHLEQLKRVIVKKEVFLGTEFYRVYFYTQAGEQIALTRFPTTHVAQQQSLARSIHQFMAAKA
>NC_019680.1|WP_015123858.1|1097575_1098748_+|LL-diaminopimelate-aminotransferase
MLPLAHRLTGLQSNVFADMDQAKALARRAGQDMIDLSLGSSDLPVDPLITQAIGAALGDTATHGYLLFHGTQEFRRAAGAWYSQKFGIAVDPETEILPLIGSQEGTAHLPLAIMNPGDYALLLDPGYPSHAGGVHLAGGQIHTLPLLAENHFLPDLSSIPNAILHQARLLVLSYPHNPTTAVAPLEFFQTAIQFCQAHNLVLAHDFPYLDMAFTPAPPPSILQADLDKSVSIEFFSLSKSYNMGGFRVGFAIGNSTLIKALRQVKAVVDFNQYLGILRGATVALSQGHQIPPITRNIFRHRRDAFVQTLNQLGWSVPMPLATMYVWAKLPQPWQSDSIGFCQQLVQATGVAASPGAGFGAAGEGYVRFALVREPEILAQAAQRVMAFLGR
>NC_019680.1|WP_015123857.1|1097037_1097421_+|DUF1634-domain-containing-protein
MTFEQRNRDDEKMDQLLGNVLRGGVVLSATVIFIGGMIYIWRNGQETVALSVFKGEPTYLKLLPDLLAADAQTHGRAIIQTGILLLLLTPITRVALSLLIFLRQRDFTYVLVTAIVLAVLLHSLLTV
>NC_019680.1|WP_015123856.1|1096201_1097041_+|sulfite-exporter-TauE/SafE-family-protein
MTVLELTGITLIGSVFAGGLGAMTGLGGGVVIIPLLTLGLGVDIRYAIGAALISVIATSSGAAAAYVKEGFSNVRIGMFLEVATTIGAISGAYIATWMPTAGISIIFGLALLWSIYATNQPHKDHLSDVGPNPLATSLGMNSCYPTSGGWEDYFPQNVPGGFGLMYVAGVLSGLLGIGSGMVKVLAMDQVMQLPFKVSTTTSNFMIGVTAAASAGIYFSRGYIDPGLCLPVVLGVLFGSLVGAKLLVHAPVKLLRIVFSVVLGIVAVQMLWQGISGLKL
>NC_019680.1|WP_015123863.1|1107757_1108006_-|hypothetical-protein
MNRQLTTDLYEVLDMLNASEDYGFHPMIIEFLKTLATNVTASEIEAFARETFLSQQAATEGYTQEDYESSIERLTTLLLTSD
>NC_019680.1|WP_015123864.1|1108140_1109100_-|hypothetical-protein
MNELQIKDQDIAIAIGTHVAHFNATVDRIKLIPGEHYKVINQGKKIRIYLVPGLKIIYQALAQGKNQAAAAKLKQLIEQKKEEHLSAQVTQVVIENCQSLKTINKSNYITIQETIRIFRTESKTFQQVLGKIKQSEKPLKADEHFTYIEGVTYISLSGIYRIGEFLADHLSNSARKKWCNTVVINVKHLYPQLTGLTKKQIIDKAKEQALERDKHKCQITGFSGLKGQIEVDVHHLYNAKHYPQLEDSLDNLLTISTALHCEFHAWMGGTNQPCTIDDLIRFIVQLYPEYRTSLITLNRFRTRLYAPYPPTPLGKQPAA
>NC_019680.1|WP_015123865.1|1109096_1109675_-|J-domain-containing-protein
MPAKPLAPHILAEIERLHRDHGYDPQILQTFAHLVLAKPPKPPKEPKSPTVKPPTVKPLTVTQLKQALYKKFNVTSTAALRKSGKFQMATDGMDALNYAIKATWEQLYRDLIGTLPDEEHQAGPECINGVNIFNYFRPWQVFNLDPQTATEKDIKDAYYRLSKTYHPDNTETGNRRIFERLEQMYRSLNQAP
>NC_019680.1|WP_172636038.1|1109824_1110151_-|helix-turn-helix-transcriptional-regulator
MNENARERLICLLQKEQRTRNMSQRELAKEFGISYTAIQNWYNRTHFPSVLSLEKIAKATGQSHSDLMEYLEGAAQFNEDTIIRQLSRLPKASLAKVMEKGLEYLTVA
>NC_019680.1|WP_015123867.1|1110297_1110519_+|transcriptional-regulator
MHPEDIKAELRKKGFTGASIARNLGLTRSTVSSVVRRKGRSAKVEVEISRILGKPVEEIFPEIPLDRLFLKSN
>NC_019680.1|WP_015123868.1|1110528_1112793_+|DDE-type-integrase/transposase/recombinase
MWFSAQELTGLPGLPGTVQSINQKAKREGWQFRNRSGKGGGKEYHVSSLPTEAQARLLELENTPIYKEKTDELCGSALPGFDSVLCGADGDFVDSHCDFTSRLLTEAPKDKKTRQAEARQQILLTLQDYLTRQNAVGLGRVRYCRQAFVDAYNDPLAPKGELRLPWWVYGEVKSISYQTLYSWELKRDVAGVSGLARKQGKRTTTIEATPELKQACLDLLLAHPDISVVGMWHEMCERFEDCPSLPTLRRFVRGWKAENSDIFDFADSRKGWRNRHMKAFGSYRATRFNQRWEIDSTLADIVWELDDGFGGFQRYALVVAVEVYSRMARVLVCRTSNSLAIAAILRECLIDWGVPESVKTDNGKDYLSRHILNILSVLGIEHKKCVPFNPQQKPYVERFNHTLNHGAAMVLHPRYLGHDVVTRQKIRSRELWPEKAKRKGDESEIEVVRINKSLRQMQCFIEEWLIDYHNTPHEGLGQIRDGAGNLRHLTPYEAAANQPAKRIENVRALDVLMMPAPQGGYRATAGKKGIRVGNLPDGTPAYYWHECLVEVGRRFERVFVKLDPNPALIHLFDSEDCTEYLGVCECYEISGNDPMPGIIATRRAEKESRKLVAAARLSRRRLEKTELTPGREVALLKGQGEIHETPALKAAANLQPARNTTVIGIGPIKESAPLPLPNPGAPRLEREVVIPRVLNQWYAGEPVDPVELAFVGRQFELNRGGVTLVECLVRDREDFFKFRRWVLAQLSEGIQQTG
>NC_019680.1|WP_015123869.1|1112818_1113103_+|hypothetical-protein
MNTVVIQIGNSDDRLSQRDWVRFRARVREVVCRYCAQIHFDGHSNSDAVWQNACFVAEIPEGLSEVALKDVLSEISDEFGQDSIAFTTGTTEFV
>NC_019680.1|WP_015123870.1|1113154_1113877_+|AAA-family-ATPase
MQNIAITKNLKRFQGAFGDLIGRSERIPGLGLVTGPAGTGKTVAATHICHKQNAIYVLADPFWTASSMLGAILHKLSVNPGRVSNAEAFRLAVERMRDTGRSLLVDDADFLFDSSDRNRLVEGLRSLHDKSQQPVIMIGMEKIRSKLHRYPQVLGRMSRSVDFEYLDLEDTRAVLEVICKVSIAPDLSQVIHQRTKGALRLIVVAAETIEAEATAQGWEVVTADQWGDAVLFTGDSRRAA
>NC_019680.1|WP_156804740.1|1113885_1114413_+|hypothetical-protein
MPRQIVWTAIAPRVGEVVDFAPLFESVGTTVVLQRSWLLALSRAGYLLRQGRGGRFQVLRHTGVLAPMRRKDGSLYDPNTAGPIELGALRVWVALLINKVLTQPEAAALCDLSVQRVAELLSAWQRVGAVRVSRVGTGNGLEYRIVRDQPICPIVTPHGVFDVYLNKFLEVANDG
>NC_019680.1|WP_041430633.1|1114402_1114783_+|hypothetical-protein
MMGNRLAFRPKAGHFIDCERLGNGTFRVEIQQGVKVCYGVLTPEDARMTARMMAGMGPVRLVFRPQTGHLIDFERLENGTVRMEIRQELEVCYAVLTPEDARMLGRMLMAGSGPVLPGFTQMRRAG

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Crispr_ID: NC_019680_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019680_2

1147365-1150114

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CRISPRCasFinder
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CRT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	PILER-CR

38 spacers

cas2,cas1,cas5,cas7,cas8b3,cas3

The CRISPR arrays of NC_019680_2

>merge|NC_019680|2|1147365-1150114|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACACCCTGCCGTATCTTTAACTTCAAATATGTATTTAGTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTTCCTTTTAATTTTACTTCGGTAAAACAAGAAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTCCATTAACGAATTAGAAGCCGAACGCACAAAACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACCGCATCAGTTAACAGCATTTGCTTTGTAACTCTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGGGCTTGACATTACCTTGGCGGCCCAACAGATGGGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGGAGTGAGACAAGTGAACAACCTAATAGATTGGAATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACATTTTTCAATCTAATAGAGCTTTCTTTAACTTTTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGTTCGATTATTTCTCCGTTAACTTCTTCTATCTGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGATCTATCCGTTGCCGTGAAATTAAGAACAGATTTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTGGGTTTGGAGACAACAAGAGTCACGGGCAAAAAAAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCAAAGTAAAAATTAGGTCATTGGAAAGCATTGAAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGTCAAAGTTGGCACTGATCGTCTCGCATCATTGGCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTCGAGATAGCTTGCAAGTTTTGGGTATCGTTTTCGAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAACTCATGTCTCCGTACCCAGGCGATTTACAGCAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGCCCCAATCGCCGCAGTTCACCTTGTTCCGAATCGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTATATCTAAATTGTTTCTAATCTCGTTAATATCCTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAAAGAAAGCTCTATTAGATTGAAAAATCTTTAAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACAGGGAATTTACTTTTAGTATATACAATTAACGAAGTAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCCTAGCCTGATTACTGTGTGGCCTTGAGTATCTTGAGTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGGGGGCCACGGCGAACTGGAAAGTTTTTAAGACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGAGTCTAAGTGGAAGTCTGAGTCTTGATTACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGAGTCTAAGTGGAAGTCTGAGTCTTGATTACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCGAGTATTCCGTGAACAGCCAGACGGATCGGTTGTGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTGGTCGGTGGTACTAATGTCCTGAAACCCGCGATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCACTGATGGCGGGTGCGGGTATAGCAGGTGGAAGTGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCTTCTCACCGTCAAACATAATCCTGATGTTTGTTCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTTAGACGAAATTTACGAACTCGGACAATCTCGCACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCGAATTAGTATGAGGGCAAATAACGGTATGCCCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGCTGTACCGTTCTAGGCCCATTAGGAGCCATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACAGCTTTCTGCCGCTCCAACCAGTATTGCCACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGTATAGCCTGTACCACAACTTAACGGATGCCAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGAGACGAATCAGAAAGAAGAGTTGCTTATTTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTCTACAAAACAAGTTAGATTGCTTAACCAAGAGACGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|2|4|1147365-1150114|PILER-CR
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACCCTGCCGTATCTTTAACTTCAAATATGTATTTAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTCCTTTTAATTTTACTTCGGTAAAACAAGAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCCATTAACGAATTAGAAGCCGAACGCACAAAACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCGCATCAGTTAACAGCATTTGCTTTGTAACTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGGGCTTGACATTACCTTGGCGGCCCAACAGATGGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GGAGTGAGACAAGTGAACAACCTAATAGATTGGAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATTTTTCAATCTAATAGAGCTTTCTTTAACTTTTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTCGATTATTTCTCCGTTAACTTCTTCTATCTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GATCTATCCGTTGCCGTGAAATTAAGAACAGATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGGTTTGGAGACAACAAGAGTCACGGGCAAAAAAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAAAGTAAAAATTAGGTCATTGGAAAGCATTGAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTCAAAGTTGGCACTGATCGTCTCGCATCATTGGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCGAGATAGCTTGCAAGTTTTGGGTATCGTTTTCGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAACTCATGTCTCCGTACCCAGGCGATTTACAGCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCCCCAATCGCCGCAGTTCACCTTGTTCCGAATCG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATATCTAAATTGTTTCTAATCTCGTTAATATCCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAAAGAAAGCTCTATTAGATTGAAAAATCTTTAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGGAATTTACTTTTAGTATATACAATTAACGAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCCTAGCCTGATTACTGTGTGGCCTTGAGTATCTTGAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGGGGCCACGGCGAACTGGAAAGTTTTTAAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGAGTATTCCGTGAACAGCCAGACGGATCGGTTGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGTCGGTGGTACTAATGTCCTGAAACCCGCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CACTGATGGCGGGTGCGGGTATAGCAGGTGGAAGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTTCTCACCGTCAAACATAATCCTGATGTTTGTTC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTAGACGAAATTTACGAACTCGGACAATCTCGCAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGAATTAGTATGAGGGCAAATAACGGTATGCCCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGCTGTACCGTTCTAGGCCCATTAGGAGCCATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACAGCTTTCTGCCGCTCCAACCAGTATTGCCACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGTATAGCCTGTACCACAACTTAACGGATGCCAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGAGACGAATCAGAAAGAAGAGTTGCTTATTTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC
	TTGCTGTACCGTTCTAGGCCCATTAGGAGCCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACAGCTTTCTGCCGCTCCAACCAGTATTGCCACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGTATAGCCTGTACCACAACTTAACGGATGCCAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAGACGAATCAGAAAGAAGAGTTGCTTATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|2|2|1147365-1150114|CRISPRCasFinder
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACCCTGCCGTATCTTTAACTTCAAATATGTATTTAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTCCTTTTAATTTTACTTCGGTAAAACAAGAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCCATTAACGAATTAGAAGCCGAACGCACAAAACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCGCATCAGTTAACAGCATTTGCTTTGTAACTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGGGCTTGACATTACCTTGGCGGCCCAACAGATGGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GGAGTGAGACAAGTGAACAACCTAATAGATTGGAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATTTTTCAATCTAATAGAGCTTTCTTTAACTTTTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTCGATTATTTCTCCGTTAACTTCTTCTATCTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GATCTATCCGTTGCCGTGAAATTAAGAACAGATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGGTTTGGAGACAACAAGAGTCACGGGCAAAAAAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAAAGTAAAAATTAGGTCATTGGAAAGCATTGAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTCAAAGTTGGCACTGATCGTCTCGCATCATTGGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCGAGATAGCTTGCAAGTTTTGGGTATCGTTTTCGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAACTCATGTCTCCGTACCCAGGCGATTTACAGCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCCCCAATCGCCGCAGTTCACCTTGTTCCGAATCG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATATCTAAATTGTTTCTAATCTCGTTAATATCCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAAAGAAAGCTCTATTAGATTGAAAAATCTTTAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGGAATTTACTTTTAGTATATACAATTAACGAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCCTAGCCTGATTACTGTGTGGCCTTGAGTATCTTGAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGGGGCCACGGCGAACTGGAAAGTTTTTAAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGAGTATTCCGTGAACAGCCAGACGGATCGGTTGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGTCGGTGGTACTAATGTCCTGAAACCCGCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CACTGATGGCGGGTGCGGGTATAGCAGGTGGAAGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTTCTCACCGTCAAACATAATCCTGATGTTTGTTC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTAGACGAAATTTACGAACTCGGACAATCTCGCAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGAATTAGTATGAGGGCAAATAACGGTATGCCC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGCTGTACCGTTCTAGGCCCATTAGGAGCCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACAGCTTTCTGCCGCTCCAACCAGTATTGCCACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGTATAGCCTGTACCACAACTTAACGGATGCCAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAGACGAATCAGAAAGAAGAGTTGCTTATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|2|2|1147365-1150114|CRT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ACCCTGCCGTATCTTTAACTTCAAATATGTATTTAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTCCTTTTAATTTTACTTCGGTAAAACAAGAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCCATTAACGAATTAGAAGCCGAACGCACAAAACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCGCATCAGTTAACAGCATTTGCTTTGTAACTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGGGCTTGACATTACCTTGGCGGCCCAACAGATGGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GGAGTGAGACAAGTGAACAACCTAATAGATTGGAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATTTTTCAATCTAATAGAGCTTTCTTTAACTTTTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTCGATTATTTCTCCGTTAACTTCTTCTATCTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GATCTATCCGTTGCCGTGAAATTAAGAACAGATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGGTTTGGAGACAACAAGAGTCACGGGCAAAAAAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAAAGTAAAAATTAGGTCATTGGAAAGCATTGAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTCAAAGTTGGCACTGATCGTCTCGCATCATTGGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCGAGATAGCTTGCAAGTTTTGGGTATCGTTTTCGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAACTCATGTCTCCGTACCCAGGCGATTTACAGCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCCCCAATCGCCGCAGTTCACCTTGTTCCGAATCG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATATCTAAATTGTTTCTAATCTCGTTAATATCCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAAAGAAAGCTCTATTAGATTGAAAAATCTTTAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGGAATTTACTTTTAGTATATACAATTAACGAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCCTAGCCTGATTACTGTGTGGCCTTGAGTATCTTGAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGGGGCCACGGCGAACTGGAAAGTTTTTAAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGAGTATTCCGTGAACAGCCAGACGGATCGGTTGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGTCGGTGGTACTAATGTCCTGAAACCCGCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CACTGATGGCGGGTGCGGGTATAGCAGGTGGAAGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTTCTCACCGTCAAACATAATCCTGATGTTTGTTC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTAGACGAAATTTACGAACTCGGACAATCTCGCAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGAATTAGTATGAGGGCAAATAACGGTATGCCC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGCTGTACCGTTCTAGGCCCATTAGGAGCCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACAGCTTTCTGCCGCTCCAACCAGTATTGCCACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGTATAGCCTGTACCACAACTTAACGGATGCCAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAGACGAATCAGAAAGAAGAGTTGCTTATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

>NC_019680|2|5|1149366-1150114|PILER-CR
	ACCCTGCCGTATCTTTAACTTCAAATATGTATTTAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTCCTTTTAATTTTACTTCGGTAAAACAAGAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCCATTAACGAATTAGAAGCCGAACGCACAAAACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACCGCATCAGTTAACAGCATTTGCTTTGTAACTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGGGCTTGACATTACCTTGGCGGCCCAACAGATGGGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GGAGTGAGACAAGTGAACAACCTAATAGATTGGAAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	ATTTTTCAATCTAATAGAGCTTTCTTTAACTTTTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTCGATTATTTCTCCGTTAACTTCTTCTATCTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GATCTATCCGTTGCCGTGAAATTAAGAACAGATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGGTTTGGAGACAACAAGAGTCACGGGCAAAAAAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAAAGTAAAAATTAGGTCATTGGAAAGCATTGAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTCAAAGTTGGCACTGATCGTCTCGCATCATTGGC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCGAGATAGCTTGCAAGTTTTGGGTATCGTTTTCGA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAACTCATGTCTCCGTACCCAGGCGATTTACAGCA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GCCCCAATCGCCGCAGTTCACCTTGTTCCGAATCG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATATCTAAATTGTTTCTAATCTCGTTAATATCCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAAAGAAAGCTCTATTAGATTGAAAAATCTTTAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	AGGGAATTTACTTTTAGTATATACAATTAACGAAGTA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCCTAGCCTGATTACTGTGTGGCCTTGAGTATCTTGAGT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGGGGGCCACGGCGAACTGGAAAGTTTTTAAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGAGTCTAAGTGGAAGTCTGAGTCTTGATTAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CGAGTATTCCGTGAACAGCCAGACGGATCGGTTGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TGGTCGGTGGTACTAATGTCCTGAAACCCGCGAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CACTGATGGCGGGTGCGGGTATAGCAGGTGGAAGTG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CTTCTCACCGTCAAACATAATCCTGATGTTTGTTC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTTAGACGAAATTTACGAACTCGGACAATCTCGCAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCGAATTAGTATGAGGGCAAATAACGGTATGCCCGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGCTGTACCGTTCTAGGCCCATTAGGAGCCATGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTACAGCTTTCTGCCGCTCCAACCAGTATTGCCACTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTTGTATAGCCTGTACCACAACTTAACGGATGCCAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACCCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAAGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACGTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGGGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTAGAGACGAATCAGAAAGAAGAGTTGCTTATTTTGTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAACTCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC
	TTGCTGTACCGTTCTAGGCCCATTAGGAGCCAT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TACAGCTTTCTGCCGCTCCAACCAGTATTGCCACT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TTGTATAGCCTGTACCACAACTTAACGGATGCCAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CAAGTAGGCTTTACGCAGTTGTAAATCAAGCGTCT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	CCAGATAGCTTTGCCCCCCAACCCATAGAAAATCAAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAACTGAACCGGCCTTAACCCTGACCCAATACAAAA
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	GTTATAGCGTTCCTCTCCCAATAGATTCTTAAGAG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TATCTACTTTAGGTTTGTACTCTTGTGATTTCCCGG
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TAGAGACGAATCAGAAAGAAGAGTTGCTTATTTT
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC	TCTACAAAACAAGTTAGATTGCTTAACCAAGAGAC
GTGCTCAACGCCTTACGGCATCTAAGGTAGAGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019680.1\|WP_015123915.1\|1150661_1152326_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NC_019680.1\|WP_015123905.1\|1136557_1137007_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370600
NC_019680.1\|WP_015123916.1\|1152448_1152715_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_019680.1\|WP_015123911.1\|1143428_1143686_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123923.1\|1159124_1159388_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123909.1\|1141687_1142233_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123908.1\|1138370_1141691_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_019680.1\|WP_015123912.1\|1143685_1145578_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123904.1\|1136116_1136557_+\|DUF1320-domain-containing-protein	unknown	unknown	gnl\|CDD\|369176
NC_019680.1\|WP_015123906.1\|1136999_1137770_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123907.1\|1137793_1138378_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_156804743.1\|1145640_1147188_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367102
NC_019680.1\|WP_015123919.1\|1153713_1154709_-\|DevR-family-CRISPR-associated-autoregulator	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_019680.1\|WP_015123920.1\|1154744_1156283_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NC_019680.1\|WP_015123917.1\|1152711_1152948_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015123921.1\|1156273_1158712_-\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
NC_019680.1\|WP_015123918.1\|1153072_1153717_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NC_019680.1\|WP_015123914.1\|1150366_1150660_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_019680.1\|WP_015123922.1\|1158708_1159128_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379205
NC_019680.1\|WP_015123910.1\|1142229_1143429_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019680.1\|WP_015123915.1\|1150661_1152326_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NC_019680.1\|WP_015123905.1\|1136557_1137007_+\|hypothetical-protein	gnl\|CDD\|370600	pfam09646, Gp37, Gp37 protein. This protein of 154 residues consists of a unit of helices and beta sheets that crystallizes into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral origin as it is found in phage BcepMu and is probably a pathogenesis factor.	0.000229989
NC_019680.1\|WP_015123916.1\|1152448_1152715_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.87668e-17
NC_019680.1\|WP_015123919.1\|1153713_1154709_-\|DevR-family-CRISPR-associated-autoregulator	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	9.05092e-27
NC_019680.1\|WP_015123908.1\|1138370_1141691_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	3.46674e-11
NC_019680.1\|WP_015123920.1\|1154744_1156283_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	5.14518e-31
NC_019680.1\|WP_156804743.1\|1145640_1147188_+\|hypothetical-protein	gnl\|CDD\|367102	pfam02487, CLN3, CLN3 protein. This is a family of proteins from the CLN3 gene. A mis-sense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease). Batten disease is characterized by the accumulation of autofluorescent material in the lysosomes of most cells. Members of this family are transmembrane proteins functional in pre-vacuolar compartments. The protein in Sch.pombe is found to be localized to the vacuolar membrane, and a lack of functional protein clearly affects the size and pH of the vacuole. Thus the protein is necessary for vacuolar homeostasis. It is important for localization of late endosomal/lysosomal compartments, and it interacts with motor components driving both plus and minus end microtubular trafficking: tubulin, dynactin, dynein and kinesin-2.	0.00426445
NC_019680.1\|WP_015123904.1\|1136116_1136557_+\|DUF1320-domain-containing-protein	gnl\|CDD\|369176	pfam07030, DUF1320, Protein of unknown function (DUF1320). This family consists of both hypothetical bacterial and phage proteins of around 145 residues in length. The function of this family is unknown.	3.20085e-39
NC_019680.1\|WP_015123921.1\|1156273_1158712_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	8.55618e-44
NC_019680.1\|WP_015123918.1\|1153072_1153717_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.21627e-53
NC_019680.1\|WP_015123914.1\|1150366_1150660_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	3.20183e-20
NC_019680.1\|WP_015123922.1\|1158708_1159128_-\|PIN-domain-containing-protein	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	9.41043e-14

>NC_019680.1|WP_156804743.1|1145640_1147188_+|hypothetical-protein
MPVAYPVGEDEYDNKTLEIEQILAGVVQNVIGRIAWSPEGEWDNSTPYQVDDIVYVPGVGSFICVQNHTNQQPPNPTYWQRLTSEGAKLLTGNGVPSSGLGRDGDLYIDVENSDLYGPKTSGAWGSGTSLIGAAGVIGSQIYAGTGAPSDLENDVDLYIDDSTGDLYKQIDGEWELLLSLKGEDGATGTVSAASGVTLEHIATPSAPSAGNTILYAKSDNKLYFRPASGSETEVGAGSGGASAFADLTDVDFDPVPAVGDTFVWNGLIMVPAYRRDVLTSDRDYYFRTDGNDSNTGATNDAMGAFLTPQKAIDVVAGLDISIQNVLIQGGDGDYTGAGDLVIKAPLGSGNVTLQGNTSDRSLVQLGSTTFTRSPYLGFSIKDLYLNLATNVTALAANAAYLTVNNCRVRNASASGFSAKIRADNGGTIIITNGIHLEGNTAGASGYCFFAFGQGLISALNQTFTMISSPSFGNVYYCGGLSFIELGGSTISGTYTGTLYTKEGGGTIRGPAFTYV
>NC_019680.1|WP_015123912.1|1143685_1145578_+|hypothetical-protein
MLNTASRKFKVILYKGDSGSPWDVSNLVSPEGIEITRDQIQLEEPPIVNGTLTLRGTGGESLNPRVNFGRFAPGNLVWIQVQDSTGTWRDLPFGARLRINEFDFDDGLGRPGEGRKPPQITLMLTDKLGFAREIDPPTDASDIEIGESTPLADVVQRYLEFKDLTLSTVEGDPVPSAALIAPLTFDGKGNVIAHAHKLLWCNPNQDREAYAVSVDKLERVRLSRINLAPETALFEVLPEALVLYRDIREEKEKLPGKVKVTGVGKILKPTEDPPPQTVLLFDADGALVGSTTTFYSSDDSDLQTFRKLTTKTTRTQAKRVFPDLDVGNQLIVSERADSVIAYRKSDKAKVEERETTWIPAGLIDPEAFNIYQPRRARLSVKTVNYELDKTIKGSNTGRKAARGLNNRPEDVDNEEGTPYDLLFDGSEAESYVKINAEQYAKSVVSTDPDGQKQSQSFANAEALPPAADLMPDPNTIEESELMAEEEIVYPDQEPGINKRTKTIDLGDYVLNQESCRRMGLLYARFTLGNWLAKEIVFPISDTLLNSDWTPGKAIFVARGDGTSDVYLCSGEAITLDLRSFYAGVTGIWLGTRETGALDVPPNDPIGTVKRYLALESGGRILQENNGGILL
>NC_019680.1|WP_015123911.1|1143428_1143686_+|hypothetical-protein
MDPSPLLSQLRNQARSTQIAETLVQQGRFIYKGTVTKLEGDKVWVSIQGQPPIRCQSLGGSFGLGEFVTVRITAGKGFVKKLEAR
>NC_019680.1|WP_015123910.1|1142229_1143429_+|hypothetical-protein
MSLDSMLLSLAQTRQKTRDTVATTEIVRRMRQLDPWLRNTSSVDSGPFDGREYRRVKVEEQNRDKELSVGFIKVVQTIPGGTKYARTYYCSIDNGKFIELVTLESLDTSAGSSQGIRNFYEPQGYWAGSEFWVYIFNEECISVGTQAPTGARNGIFRFICRAYVNGNLRWTYVYNYPPRANTGIGGDPSPGDIYTVGDRWTHTFIGCGKDEIYFKRVESIQLTRSYPEINFNFPVVFSTVSLKGGTATISTAATIDITSLDGQEILGYFSRRDSEVFAARIYYDSLLDSRHGGADRIYLGPKVVLYKRDLSKIYWTQDAESKESAFSDNDLLFVRRVFSYRRPLYSYWDSNARQLYSEKFDGSSKNKRTSRVSPFKIIEKDRENSDFESIEYGLFLGDS
>NC_019680.1|WP_015123909.1|1141687_1142233_+|hypothetical-protein
MTSVNYPFGTTQVFSYGEDEDALTVTLDAANFEFAAGQGDGYLDFLGYDRQDDPEYLAKTKLNSSGAAVWEGPAFVIPQLFAWRLQLLTQEKYETLWAMYRRQQSEKEPIILEDYRLVMSEPSPKTRTEVGEVMNAPDIAGMDYFCAVFAIRLEMGTRYQIFWDGNARLYELEMTAREILA
>NC_019680.1|WP_015123908.1|1138370_1141691_+|hypothetical-protein
MADLKTRLIFSAEGTGRTVGEIRQLQNELKRTGQEGAQSIQQLDTVNTRLVGSVQELAAKYYLVISALQGIVAAARPAYDLLIGQNERLQQQILGTAASVSATNRVFQDGFQIADPTEAITAVTPLIEQSLAKIRKGSLELVGVTSGQLVDSYQIIAGQTGELDINLDQAADLTLDFAAALGTLGIPLFQARQEITSIAQGTIDQNSILAKTLGLTNDQVKTLKEQGRLYDVLREKLAAFRAGNALAANSIDGITSNIQELVELLGLELGAPLREQILGPLADIFEFLNSKSEQITEFLREVINLFDDIGASIRDSLGNSFSQLEAALAPIQERLVALWADGTIQNGLRDLGAAIGQIIELFFEWQALLTQLIGPQIQTLLTLLPFVLKGAAALLSGISLTLQAIVRGIAILVDAVLSFPRLIADIGRSITSTFGLGKESVDRFFRALVNGISDPRIRLLLKLLGVSIAELGDNFDPIVEKARDATDAIVRETERLQSELASGAAGASGKIGEQIKKIDAQIESLRRSTVEGRANREEVQRQITVLEELRRALAGAATGTEVLVSFQKEQERTLKEIERLTKKFSTTLELEEQERQNRITEIANAGLESSNEIERQKLESKRQRIEQELAFERENLAKIEALQGDPDERESAIRDAKLKTAKLAGQLLENEAQQQKQGIAEIEQVTKESLQRLQLAEQERQNQIQELLNQGLIRQDQAERKRLQSTRERTEAEFKAEQEKLDKLEAAEGNNAEAIAAQKQKLAEITGRLLENEFQQQQKLRDLIIKKITEAEQLQARSADLQAKRLERLITLAGQQERVFQSQVSLQQALDRLTKSRFDLATATAETELEALKKAGASQDQIERKEKQIQDLKLQAIQASQLAAQRELEFQIQAEIRANKRLEIEAKIAALKAKSEVVSQQAALEKLKLNPEATPEQIKQAQELLDLTRQQAAEAENLVTLAQQEGTQIQQTAQIRREALQNDQTRERLPFQRPGLQGSPLGALGASPVSAGVAPLPRSPVTPAIAPLQPLVGVEGVPPLPSVSQVRPVIAIPQTEVVNQLKSLEEIVKTISGQVGAVSTRPNVNVTNNNPPPQLPRGNQLGVLAL
>NC_019680.1|WP_015123907.1|1137793_1138378_+|hypothetical-protein
MFATFPRLEFEDRCGVIRGLAGCSLIGRQEFFERLQQVQQRLQELPELSTVAELYDTDTRFRHYCDRCLILNGLDPDWLTMSMLEEMLFVRVVEGETRPGLLTELNQPPKSSKPTDEPATLHEILASLATHEKSLGDALKLASDLNLPANDLLEILTARSELEKSADPEYRKKKQQKAWQEKALADLTGGMPNG
>NC_019680.1|WP_015123906.1|1136999_1137770_+|hypothetical-protein
MLSGVGRLALITRSLSATAIAQELMIPGKFSQFNLNVETENKKAEAWIDGVKENVSSAIGKRTTTLQLAFQYLDWFHLQLAQDELATNVNVTLPIYKTVTVPATPFKITDADISSAGIASSVKAYVTDRGSWGEAGYLVAESGTLAAREFEADHTDTSITFHSGLAGASVTYVVDKAFTSIPSIGKAPDAIKIGEVSFIGKGYGPEFPNGVFIHIPSLTRSGSPSLQTDDVPTFEIPFDCNVASGYRTPVQYYRLP
>NC_019680.1|WP_015123905.1|1136557_1137007_+|hypothetical-protein
MGLRTAIEQDIVAALAPLQELGVFVVDCPEESRKSGEVFDVGQVSVGFTGETAEAPLSLPVHGTPLIQPFSMSFEVHLELQDDNHRKAANLIDQVEELVNGLIPTGQDKPLYFIRSGFLQLDSESIWHYAVIFGFQVVKKSHLKEAVNA
>NC_019680.1|WP_015123904.1|1136116_1136557_+|DUF1320-domain-containing-protein
MNYCTAEDLIARFGEPELIRLTNTGLPGATEINSERLESAIERQSRVMDAFIAVKNQLPLPEVPPVLVSFCCDLVRSDLDNKREREEVKQRREEAMTFLKQLAKGEATLGIAADAEEKPATAEPILVYGTAESLDEEPLDQALRWF
>NC_019680.1|WP_015123914.1|1150366_1150660_-|CRISPR-associated-endonuclease-Cas2
MAEKQSWYLICYDIRDPKRWRKAYKLLKGYGESLQFSIFRCLLTQRNCEKLRWELEQILEPEDALLLVGLCERCRERLCSCNRPGAWIEPSDAHQIF
>NC_019680.1|WP_015123915.1|1150661_1152326_-|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MLALPTQAPPTTPTIRVSALHALAYCPRLFYLEEVEELYTQDAAVFAGRRLHVELQKQEDEDWEELNLESETLGIRGRVDALRTRNGQVIPYEHKRGRCYRDQNKQPQAWASDELQILAYAYLIEEALNIPIQEGRIRYHADNVMVRVPLTTAGRQKVLTAIQQAQALRQSLQRPPVATNEKLCASCSLAPVCLPEEARLTQDPDRATFRLFPRDDDREIIHVLTPGSKVGKSGEQIKISHRDQPEEKLPAQRVSQVVLHSFSQISTQALHFCASRDIGVHFITGGGRYIGSFDSRQGSIQRRIRQYQALSDPQVCLHLAKLLVTCRGQSQRKFLMRGQRGKSDVLTTVTPIIEQMQAVLKQIEPVNSLESLLGLEGNLASLYFSALPALLTERIPAELQFSGRSRRPPKDPFNALLSFGYALLLKDVMNGILTVGLEPALGFYHQPRSQAAPLALDLMEIFRVPLVDMVVVASINRQQWDISTDFECRGAQVWLSESGRRKFIDAYERRKQEKWKHPVTNYSLTYRRLLELEVRLLEKEWMGEPGLFAKLVVR
>NC_019680.1|WP_015123916.1|1152448_1152715_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSNYRIEFLKTAKKELAKLPKEIQQRIANRIEALIVDPYPVHTKKLKNGNGLLRIRVGDYRIIYRVEAEKLIILVIKIGHRRDIYTQI
>NC_019680.1|WP_015123917.1|1152711_1152948_-|hypothetical-protein
MNSVSISGKILAGITSLAQQFNLSSEEFLDWIAQGKLAVINADDLEDLLDVKEATLAESNPENQRRVTWDEVKQELGL
>NC_019680.1|WP_015123918.1|1153072_1153717_-|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MIALHIEVPYASFRKSYARSFAETYPFPPPATVYGMLLSHVGEYFRACHTGVKLAFAYKQQPRIATTLRKLSRYKYGVASKQSKVGNAPDYIETLCNIEFICWVDSSGEKKQTGRSLEQRLIEVIQSPELITRTGLVCLGLSDDTVDDVSLIKSIQGKWHWLNPSNTGQIELPIWVDHVGSYHTRWQRFDFEVLPSLIDSNPSIEKFIEIIDPR
>NC_019680.1|WP_015123919.1|1153713_1154709_-|DevR-family-CRISPR-associated-autoregulator
MPTHYLYGTILTSEAVAANNRGDNIGNTTTLQKVFHQDDVHTSVSAEAIRFALRYRFQLEATAPVNRSYDSSTGKLEYQDEKRTQWNPQGDVFIDDDLMGFMDAEAAAKEKEEEVETEEESDEPKAKRKKEKPKGKTTKRQSPLAIGRAVSLRPYRAELSFNCVSGEKSKGQLSLYSAEMHTTEYQYSFGLNLGDVVKKKHIASLIEAIIDPPQVAGNHSRFAYDFSPASIVLRVTNAHSSKIQNCFEHNEEERTYTIARLINRIESGDIPASEIIIGGEVANTDEGEKLKELKVTVLSGVIAAANEARKRIATFGQEYSEIAPDTTGGVA
>NC_019680.1|WP_015123920.1|1154744_1156283_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MEIASIFPLTYCLSDPNYTIYHRAALGGLAATIEAWDKSPPQGITPKLDHDFVIIEKTGDLTDQEAFKLILDASFKLTEDKLIDLPGQFIREDAIDLRISIHEGLCLTFLQHNKMRPGEKEPYKFPLKLADSDENQLITYKAINSFAHQKAQGTGLLGDSPKNKDSGRLPQFASIPQSMIPGAMTGRKSLQAPVKEVILLHFLMVGCVTFLLRPRTYKEKAQACIVIPDIIDLVGFTGAIKRISSRSQNFERFTHTYLGRVVGGAEEAAFSFLLDMTTHKIEREKSIKGCQAIAMGKVAWDKNQINRSISVKVGGDYEELGVFRAAKQYLGKSKFIKLRDGKSFSVPDTAIPELIAANLAANRHWCGHFKELLAKKEDFHNLLFKKGGLHKVSQAIKSKEDIAIIRAFHKAWEMTMAQMGKRARDNNLDFGRLVEVRQEKIRNEILRLKTSDAVANWFLKFCADATKGGSLAPIREDAELIRDFIFNRRNFDRLQNLLLFALVSYESDKSNN
>NC_019680.1|WP_015123921.1|1156273_1158712_-|CRISPR-associated-helicase-Cas3'
MKRLLAKSYDHKKYNEPPPYSLLTQHSRDVASACKSLAQISGSIALRNAEIESELVDFERILRATGWLEDLGKASSHFLEMLTNNDGLQLIRHETISGLLACLEPQFQSWLEPLGKYRIVAIWGAMGHHRKFDERTEPNQVQRLILHISQSDNLDFNAILEEMSLDLGLGNPPQFERNLVIGYDLDDECDIPALESLNDLMDQFEKYEKKEFANEQSRRFVALVKGYGIAADVAASAVAKKEGEDNQPYSLSDFVNNDLSIKLSPKDLTQLIHSWAWRNSQFKDKPDLSQYPPGFTLRDFQENVAASKSYLTLAVAGCGSGKSLAAYLWARDWCEKLTDRNFRLFFCLPTTGTTTEHFKDYALESGIPESLIALAHSRSSIDLQTMAQTSPQEDAESSDTAKAAQETLRAEQDKIESLALWSTPLTVTTADTVLGLMVNARRSIYSLPAIMQSAIVFDEIHAFDDQMFGHLLVFLKNFPKLPVLLMTASLSEERLRAIEGIRPDLNRVPGLEEFEILPRYDLPYTVEQVNEEIVWREVQKCLENKGKVLWVRNRVDWANQIYQKAQDDFPDIAVNIYHSRLRYKDRSERHRRVIDTFKEEGKAALLVSTQVAEMSLDLSADLLVTDIAPVPALIQRMGRLNRRATLDNPGNPKSALICPLPNIKGDAYKPYEKSDIDTSLIWIQKLLDLNKSLCQRDLADKFLEVSDPKEYDYEKAEKRACFFSGVWRTRPGITRGEGYTISIVLEEDFKKCNDFKYGQPSPNWIRKHEVAIPMRPEVLKWERIAGVRIAPKEFVAYDYNETTKEGTGASWK
>NC_019680.1|WP_015123922.1|1158708_1159128_-|PIN-domain-containing-protein
MKILIDANVLLDVALEREPFFRDSDRILTLSEQKTLIGYVSASSFSDLFYILRKSKGKSLALDFLRHIVSFCQIVTVDDAVIRQALTGDFKDFEDAIQYTAAAASQLDGIVTRNPEDFTDQTVPIYTPQKLIEAIEVAT
>NC_019680.1|WP_015123923.1|1159124_1159388_-|hypothetical-protein
MEALKLKGWVDVDGQLHLRDAIALPVGEVELVVWPIPPSISPVSSTKRRVKSSVKALEGWFEQTEPTPEDFDVDEARWDALKEKYDL

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Crispr_ID: NC_019680_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019680_3

2775103-2775462

Orphan

Consensus_repeat	Method
GTCGTAGGTGTAGCGGGTAGTCCGGTTGAGTGGATC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_019680_3

>merge|NC_019680|3|2775103-2775462|CRISPRCasFinder
ATCGTACTGGTAGCGAGTGGTTCGATTCAGGGCATCGGTCAGGGAGAGCAGGTTACCGGTGGAGTCATAGCCATAGCGAGTGGTCTGCTGTAGGGGGTCACTCACCTGGGTCAGCCGCTCTAAGGGGTCGTAGGTGTAGCGGGTAGTCCGGTTGAGTGGATCTTAGATCAACCCAGATACCCCCCAGTCCTGGGCCCCGTCGTAGGTGTAGCGGGTAGTCCGGTTGAGTGGATCCGTCAGAGCGAGGAGATTGCCGACCCCGTCATACTCGTAGCTGACCCTGCCCTCGAGGGGGTCGATGACCTGGCTGAGGCGGTTGCGGTTGTCGTAGGTGTAACGAGTGATTCGTCCCAGTTGATC

>NC_019680|3|3|2775103-2775462|CRISPRCasFinder
ATCGTACTGGTAGCGAGTGGTTCGATTCAGGGCATC	GGTCAGGGAGAGCAGGTTACCGGTGGAGTCATAGCCATAGCGAGTGGTCTGCTGTAGGGGGTCACTCACCTGGGTCAGCCGCTCTAAGGG
GTCGTAGGTGTAGCGGGTAGTCCGGTTGAGTGGATC	TTAGATCAACCCAGATACCCCCCAGTCCTGGGCCCC
GTCGTAGGTGTAGCGGGTAGTCCGGTTGAGTGGATC	CGTCAGAGCGAGGAGATTGCCGACCCCGTCATACTCGTAGCTGACCCTGCCCTCGAGGGGGTCGATGACCTGGCTGAGGCGGTTGCGGTT
GTCGTAGGTGTAACGAGTGATTCGTCCCAGTTGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019680.1\|WP_015125447.1\|2768815_2769070_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125452.1\|2776959_2777709_-\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|214864
NC_019680.1\|WP_083853561.1\|2782912_2783488_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379729
NC_019680.1\|WP_083853525.1\|2780269_2780662_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370235
NC_019680.1\|WP_156804812.1\|2799754_2799922_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_156804814.1\|2800222_2800408_+\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_019680.1\|WP_015125453.1\|2777729_2779943_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NC_019680.1\|WP_015125450.1\|2770254_2771532_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019680.1\|WP_015125444.1\|2766555_2767065_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377032
NC_019680.1\|WP_015125442.1\|2764298_2764505_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125451.1\|2771537_2772218_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019680.1\|WP_015125443.1\|2764747_2764930_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125454.1\|2780014_2780254_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281508
NC_019680.1\|WP_015125449.1\|2769803_2770277_+\|DUF2127-domain-containing-protein	unknown	unknown	gnl\|CDD\|378298
NC_019680.1\|WP_015125448.1\|2769156_2769567_+\|DUF1211-domain-containing-protein	unknown	unknown	gnl\|CDD\|377696
NC_019680.1\|WP_015125445.1\|2767203_2767935_+\|membrane-anchored-protein	unknown	unknown	gnl\|CDD\|227049
NC_019680.1\|WP_015125459.1\|2798752_2799439_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_041430869.1\|2781974_2782442_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125455.1\|2780896_2781409_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125446.1\|2767983_2768751_+\|membrane-anchored-protein	unknown	unknown	gnl\|CDD\|227049

Protein	Function_ID	Function_description	E-value
NC_019680.1\|WP_015125452.1\|2776959_2777709_-\|SMI1/KNR4-family-protein	gnl\|CDD\|214864	smart00860, SMI1_KNR4, SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.	0.00322879
NC_019680.1\|WP_083853561.1\|2782912_2783488_-\|hypothetical-protein	gnl\|CDD\|379729	pfam15542, Ntox50, Bacterial toxin 50. A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.	2.77101e-36
NC_019680.1\|WP_015125451.1\|2771537_2772218_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.23357e-81
NC_019680.1\|WP_156804814.1\|2800222_2800408_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.19489e-09
NC_019680.1\|WP_015125453.1\|2777729_2779943_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	9.98325e-24
NC_019680.1\|WP_015125450.1\|2770254_2771532_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.22824e-55
NC_019680.1\|WP_015125444.1\|2766555_2767065_+\|PepSY-domain-containing-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	4.79286e-08
NC_019680.1\|WP_083853525.1\|2780269_2780662_-\|hypothetical-protein	gnl\|CDD\|370235	pfam09000, Cytotoxic, Cytotoxic. The cytotoxic domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix.	8.06675e-36
NC_019680.1\|WP_015125454.1\|2780014_2780254_-\|hypothetical-protein	gnl\|CDD\|281508	pfam03513, Cloacin_immun, Cloacin immunity protein.	7.52229e-05
NC_019680.1\|WP_015125446.1\|2767983_2768751_+\|membrane-anchored-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	6.27835e-86
NC_019680.1\|WP_015125448.1\|2769156_2769567_+\|DUF1211-domain-containing-protein	gnl\|CDD\|377696	pfam06736, DUF1211, Protein of unknown function (DUF1211). This family represents a conserved region within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. These may possibly be integral membrane proteins.	1.251e-24
NC_019680.1\|WP_015125445.1\|2767203_2767935_+\|membrane-anchored-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	4.61713e-88
NC_019680.1\|WP_015125449.1\|2769803_2770277_+\|DUF2127-domain-containing-protein	gnl\|CDD\|378298	pfam09900, DUF2127, Predicted membrane protein (DUF2127). This domain, found in various hypothetical prokaryotic and archaeal proteins, has no known function.	3.78238e-23

>NC_019680.1|WP_015125451.1|2771537_2772218_-|response-regulator-transcription-factor
MKILLVEDDDRIAKPLAEALRHQNHGIDIAKDGVEGWDCATAVRYDLILLDIMLPRLDGITMCKQLRSAGSQALILMLTARDTTTDKVVGLDAGADDYLVKPFKLEELAARIRALARRSGDAKPSILSYGKLQLDSGSCMVTYAGQVLSLTPKEYRILECFLRSPTQVYSRATLLDKIWELDQLSGEETIKTHILNLRRKFEAIGCSEDVIETVYGLGYRLRSPFS
>NC_019680.1|WP_015125450.1|2770254_2771532_-|HAMP-domain-containing-histidine-kinase
MFQTLRYRLLLSYLGVLVSILGVFAIAVRVVFTHALNQQVTEKLVALGQGAATGLELENGHLSLQSDFPVQSLIDRNQALEWFDSQGRSMGKQGHYRVTLLFAGKEKEAVQTQVGTPRIRGVTLPVMSSDSGRLMGYVRASQSLEEFDETLRKLDWGLGGGVIVALMLSGVGGAILTRQAMQPAEQSFERLKQFTADASHELRSPLMAIETNVEVALTYPEWNRSKGDTEKFEAIASATSQMTRLTEDLLFLARTDQLPNHHREILNLADLLDDLVRLYQAQAETKNIGLQASGGKSLYLLGDAGQLKRLFTNLIVNALQYTAEGGRVEIECHLVGKQIIISVKDTGMGILPEQLDRVFDRFWRAEQSRSYQSGGSGLGLAIAQAIAQSHGGLITVTSQPGVGSCFTVRLPVVDTHSNPKIEANI
>NC_019680.1|WP_015125449.1|2769803_2770277_+|DUF2127-domain-containing-protein
MIVAYKFFVASLMAVGAITLLFTVKNYQSLEQFSASYTLENKLTFIDFILDKILNFSLKTLRLSGIAAGLYAGMTAIEAVGLWHEKIWAEILVILLVGFSIPFEILESMHRATILNFIIFLVNLSVLWQFIIFINQKLSAIKKTIKTFKRIKYWLQF
>NC_019680.1|WP_015125448.1|2769156_2769567_+|DUF1211-domain-containing-protein
MSRKQHGLDWIVFYSDAVFAIAITLISVEIKLPFESGQLNSTELSHDLLNLFPEHQSYIFTFLIIGFFWINQYQYFTYIKHCDYKLFWLNTILLMCIDFLPFPASVLNDYRRQPVAVIFYACSMIATGLIKMVVRI
>NC_019680.1|WP_015125447.1|2768815_2769070_+|hypothetical-protein
MTSRKSSEFRQFHQAIAPLVALPLLLTAITGSIYQITDLSGNESKWLLEMDKGIFGILKPEAMYPFLNALGLFALLGTGISMWL
>NC_019680.1|WP_015125446.1|2767983_2768751_+|membrane-anchored-protein
MNKLFNRVPEVTATFWIIKILATTVGETAADFLSVNLKLGLNVTSYMMSGILFLLLLNQFRLKRYVLLSYWIVVVFMSITGTLITDSLVDNFRINLATTTIVFSIILLIVFVLWYSNEKTLAMHSINTAKRELFYWAAILFTFALGTATGDFLAEALKLGYTQAALIFGASISAITAAYYYFGMNAVLAFWLAYILTRPLGASIGDLLSQPTKNGGFGWGTVGTSILFLSVITSLIIYLSLKQKKPASLPIDQRK
>NC_019680.1|WP_015125445.1|2767203_2767935_+|membrane-anchored-protein
MSKLPQITAFFWIMKICATTLGETAGDLLSMTLHVGYAVSSTILIGVFLATLATQLGSKSYHPLLYWTVILSTSTAGTTISDYMDRTLKLGYANGSMILVTLLLVMLAYWKFSVGSLSVTNIKTPKVEFFYWTTILISNTLGTALGDFLADTSGLGFAGGALLISSLLALVMAAHYFTEISPIILFWIAFVLTRPLGATFGDVLTKNHEKGGLGYGTVGSSIVLLSILGVCILFTTLKQKRLA
>NC_019680.1|WP_015125444.1|2766555_2767065_+|PepSY-domain-containing-protein
MKNSTKFIVIGTLLGTLGLAGMARFAFAGPAQPPYATIPEQHDNKLTAQVGNGNKVTNDGVKEAAADQRESGKLQALAKVTPQQAQQAAESAQGGQAKNVKLENENGNLVYTVDIGNKEVTVDAGNGKVLFTETANQENKANEANHPRSSIQVSEAPGGDGDGETNDDG
>NC_019680.1|WP_015125443.1|2764747_2764930_-|hypothetical-protein
MPEQNSVLQEILDIDAAWDAAEAYWDAIDQQQWEEDLQGDKEYKNYLEQRDYYHDCPGHY
>NC_019680.1|WP_015125442.1|2764298_2764505_-|hypothetical-protein
MNSCLYIFNSEKLNSREVYYQRSDGEPEKGGIQLAKFLKEYGPNGKLFMEKVKGLKDGNILTDAKYEY
>NC_019680.1|WP_015125452.1|2776959_2777709_-|SMI1/KNR4-family-protein
MSLNQWYDLLAQLELSGDPSPNKQEDIAAFANICGFKLPQQFQDYCQVFGYGKFAKTQLSIYCINPFNMDSHLAIDSDIRETFSSYIEEDFPWQYNLLKNSFMFGTGDGYIILLWDLRTYSETDDSYDIYIYEDYNIDMPYCYLGRDFYAFVRDFCMGQNITEAFADIIYPKPDEDDEIIDDPDYGDAYSSDDYTNSFKCFRYQPVKLGAGSYEEFLTEMGLTEEEHLEKMKIDAEKARARMKINFDDN
>NC_019680.1|WP_015125453.1|2777729_2779943_-|RHS-repeat-associated-core-domain-containing-protein
MSDTNSLGHSRSYRYDAVGNQVGMTDRNGRRLSYSYDGLDRQTSEQWLDGAGQPIYGLSYTYDAASQLTTATDPTARYGYTYDLAGRLTRTDNAGTVGVPNVVFDYEYDAVNNLRFVRDRINGQAAGIEEFTYDALNRTTQITQSGNGVSQKRVDMGYDAASQMTSLSRFGDLAGSQSVAESEFTYDLGGRLTHLSHSHLDTVLAAYGLTYDAANRITRISSVDGINDYTYDQRDQLLGADYDYQGDEVYSYDENGNRTNAGYVTGVNNQLLSDGTYTYTYDNEGNRTSRTNIATGEVTQYGWDYRNRLVEVVTKDSSGTITQQVTYTYDFENRRIAKTVDPDGSGVASATTERFVYDGNHIALVFDGEGNQTYRYLHGPQVDQVLAQEDAQGNTLWSLTDHQGTVRDLVDEAGIPVNHISYDSFGQTTAQTNPTVYFRFGYTGREPDAETGLTYYRGRYFDPRTGGFIGEDPIGFNAGDTNLYRYVRNSPTNLIDPLGLDGKVISQERVIVLSSGDRYIDNGQEQSYIPSLTPLGIQFPSIPLRTPGSSGREPIIGNHRIIEDTTRAKIEYTPIPNGESKRRAIPWGGLYTHPGLDQEHRGHITPKVLGGSDRNRFNFMSQNPSINRGGYNQFGKDINAYLTRLGIQYEKEKAAYDKIIREGKTCPSGPRPKPPTVELVVNLGRYKNEPYNRAFPFRPDVIEAEATFSDGKVIRGWFSNDPNVETKPKASWFWIQK
>NC_019680.1|WP_015125454.1|2780014_2780254_-|hypothetical-protein
MQDICLELTWYAKEGDQFIGETVLKEVDLAKLRNLLNLPPDDPISYIHPIKEAHASFLQGFTNIKIDLSEYDYFIERAV
>NC_019680.1|WP_083853525.1|2780269_2780662_-|hypothetical-protein
MWGAAGEALEGICRILRIPLPQVPGFPENPAEGLVPPFVESSIGSSSEPILPPKNLPAFPDTQRVKPKTSVQGGGHLRKRWKDDKGNIYEWDYQHGTVEKYDKKGKHQGEFDPITGEQTKPADNNRRVEP
>NC_019680.1|WP_015125455.1|2780896_2781409_-|hypothetical-protein
MLTLTIEISKDLEDFVQVDQSLSHNDQDNDINATIQELCEIFEDTGAIKFRVSGFGQDIWPVDVATDLASILEQIPESIYSLDQGNYPFSLDFYEQGIQRRLDFNENNGLIKISCYSGTSWTPHPASILMTKEDILLQLLNIKENFLQLVNKVAPNLLSSNLFTEWRNAS
>NC_019680.1|WP_041430869.1|2781974_2782442_-|hypothetical-protein
MSIWSVSITELVNLFKGALLALSPWLIRAKIPITIFAAYDDYDEICTLLFQKIVVASLSEALIDYNPLADYGLVRNNYYDRSFISVHREDGDKEQLSLIAFEFENEKQLFLKVATLGSDLNVIDIHQLIPDRVRFGLVRNLGTTTNEIFELKVEI
>NC_019680.1|WP_083853561.1|2782912_2783488_-|hypothetical-protein
MAGVAAWTAIGNSITTGNQGIGGSNNINFPGTVPPLKIPNHTGHGPIDRGAAGEALEGICRILRIPLPQVPGFPENPAEGLVPPFLESNTINPDKQGRHIPGHRRFIPGRSELTHPNPQSLIDQFAGKGQAANKIPIGQPGSNERVDFGETIGNFVDQDTGIKIPTTIGTIRYSKKDVHIVPARPKSNELE
>NC_019680.1|WP_015125459.1|2798752_2799439_-|hypothetical-protein
MSNILTIENISIVMVVQRYNPATLTSDFLQYSGIVPAAWELARQPICTPQVSQIVFQNGVSFVAWADKIALAQPLNHQEQMTGEVAASASRFVQALPNLDYQQVGINPRCHVRCDAYSPGGHEDSGKTFLASGDWQKCGGAPAKIVIQLGYQLEGRELNIAINQGHLENGDGDKIPVLLFSGNFNYRLSDNNSPEKINSIVKIIDQWQSDVAIYRDVIETMPKLMVKI
>NC_019680.1|WP_156804812.1|2799754_2799922_+|hypothetical-protein
MSTLLKANKTRENSLFRRFYVQLIQQVKRKNTTFKLMLFPIDSTVITLTSKLFWL
>NC_019680.1|WP_156804814.1|2800222_2800408_+|transposase
MKTNLPGMSDEEISELYRHRWTIENLWKFLKMHLSLDKLIPNSLDDITTQIYMILITYLIL

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Crispr_ID: NC_019680_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019680_4

2809537-2815131

TypeIII

Consensus_repeat	Method
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	PILER-CR
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CRISPRCasFinder
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CRT

77 spacers

cas2,cas1,csx18,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5

The CRISPR arrays of NC_019680_4

>merge|NC_019680|4|2809537-2815131|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAGTCTAAGGAGAAAGAATGAAGGTTTTAGTAAATATCTTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATCTCTATGGGCATCTGAGTGGGGAGTCTATTTATGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATACCGGAATTATCGCTGAGATGCTTGACAATTTGAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGTCAAAGGAATCGGTGCTCGGTTCGTAAGCAAGAAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTCTTCAGGTAAAAACTGAAGTGCTTCAAGTGCGTCGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTCAAGCGCAGCAAGACTGGCCTCGGAATTACCTGATGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCTAAAAAGCAGTTTGACCCCGCCGTGTTTTCTGTCCTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTAGTGGATGGATTTACCAACTTATTATGCTTGTAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGGAAATCTGGCAGAATCGGGACGTTTTACAATCCTTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCGATGGAAAAATATGCTGCTACATACCTAGATTCAATGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTCAACCTTTTTTAGGAGACTGGCCGGAAATGATTGGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCAGGTATAGTTACTATCTTTTCCCAAAACTTCTAGGGAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGGTAGACAAACCCCGGACTCTGTAGGTGGGTTCTTAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCAGTTACAGGAGCCTTTACTACGCTATTGGGTACGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCAGAAATATTCACCTGAATACTTTTGGAATCCCAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATAGGGAGGGTACGTTAAACGGTTTTTATCCAAGTAGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCTATACCTGGTACAAGGTGAATGGGACTCTATTCACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGTGGAAAGGCTAAACCCTTTACACAAGTGTATTCTGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAATACTTTTGGGCACTGGTAAATGCTGAGAAGCATGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTGTGTTGCAGGCAATGTCGGAGCTACCTTAAACATGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCCGAATCGTCTGTATCAATGGCCTACACCGGCCGATAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATAAGCAATTGACGGGGTTAGGGTTCCGTCACTAAATAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGGCCAGAGTCTTGCAAGATAGCTGGCTGGAGTTGGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGCAGGATGTTGCGGCCCGCCGACACTATCTTTATAACTGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTGAAGTGACAACCAAGGATGAACGGAAACCATTCGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTCGACTTTACTGGCTTGCCATAATGCGGGTTTTCAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTAGATTTTAAAATTTCTAAAAATGTTTCATTGTCTCGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTGACTACATGAATGCCAATGCGCCGTCCAGAAGTTTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGTCAGAGAATGAGGACAAATTTAACGGGTGTAAAGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAACAAAACCGAAGTCATCTACAATAACGAATCTTATGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAGAGTATTACTGTGATCTAGTTGCGTACTACAACAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTGCAGGTGGAATCCAATGAGTCCGCGCAATCCAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCGTTGAAGTATTTGCCGTGAGAGGGGGCGTTCATTAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAGATGATGTTTATCGTTGCGAATCTGATATTCTAAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCTAGAGTAGGTGACTGTATTGATTTATTTTATCGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAAGAAACTTCGTTTTCAAAGCCTCTTCTCATTGCGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATCAGAATCGTCTTACTTATGCGCCTTATATCGAATTTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTCATCCCCTCACACACCGTACACATAACGAAGGGAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCGAATTTACACTTGAAGAAATTGGAACGGATGGAAGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCAAGAGAAAGTGGATAACCGCTTTAAGCAACTGCAAGAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGAAGTCATTTATAACAACGATTCTTATGTACTCAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTCGATTCTCAGATAGGCTATAGGCTTAATGCCTAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTTATTTGCCTAGCATGGTTGCTTTGTCTTTGATAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTAACTATCCTTGGTGACAGTAAGGCACATTACAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTTATTAGGGTATGCATTTATGACTGTTATTTCTAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTAAATACTAGGCTATCCTTATTTTTTGTGTGTTCAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAGACGATCAGCAACCAGAACAACCCCCTATTTTGAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCAATAATCCCAATGGATCGGTTTTCCATCCTTTGTATGGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTAAAGTGTCGAACTCTCTTTTTGTTAGACCTTGATAACCTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAAGATGCAGTTGAATGTACTCTCTGACAGATACTACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGCAATGACGAAGAGTACGTTCGAGTAAAAGAAGCAGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCGTAGAGGAGCTAGTAAACGTAAATTAAAGGATTTTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATAAAATTAATGCCTGATTCTCAACTGTTTCAGGTAGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAAATAACACATCCTGCGATGTCGTAGAAGATATTAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCATTCGGGAACGGGCAAACGCTGTTGGAACATTTACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGTTACACTGCAATCAGTACCCACTTGCCACCCTAAGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTGGGTAACGGTGGGATTCCCTTTCTCAATCTCGTTCAGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTGGCAGCAAAACTCGCAGCTTCATCTGCCGATTTACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCAAGCACCTAAAAATACTTACCCATTGAAAGTCGCGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTATAAGGAGAATGATTATAAATTCGTCTCTAGTAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGCTAACACGATTGAGGCTGAAGTTATCGTAGGCCGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTTCTACTATGATTCCCATGGCACTGGTTATTTTGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTGAATTTGATTTCCATTCTTCCATTAACAACACCTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAAATCTGTATGAAACCTTTGAAGCGGGCGATAGCGAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGACGAGATGGTTTAAGCCTTTCATACGCCTTCAACAGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAGATACTCGCAGGGCTGCTAAAGCCCTTAAAAGAAACGCAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTATATCCGTGTTCTGAAGTGTTTGTTTGGAGGTCAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTAGATTCGCATCCGTCTTGTTGATATGAATAGACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTGACCTGGACTACTTTCCCTGTACCCTTCTGTACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGCACTTACGTTGTACGAAGCATTGCGTACCTATAAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAAGAAGCAGGAAATCCCCTTAGACATCAAGACGTAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAAAAACATCAATCTGTTTAATGCCATCGGTTCTAAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGAACTGCAAGATCATTGTAAATCTCTTCCCGATATTGGGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGGCGTCAGTAAATCTAATAATCTTGCGTTGTTTTCGTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTCTTCGTCCTCACTGTTAAATCCCTTTTCTATTTTGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGTTCTAGTGAGTAATCGTCAGCGCAGTCTTTTAGTCTAGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAGATTAATCGAATTAACGGCGGATACGGCTGAGGTTACGTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG

>NC_019680|4|6|2809537-2815131|PILER-CR
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGTCTAAGGAGAAAGAATGAAGGTTTTAGTAAATATCTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATCTCTATGGGCATCTGAGTGGGGAGTCTATTTATG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATACCGGAATTATCGCTGAGATGCTTGACAATTTGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTCAAAGGAATCGGTGCTCGGTTCGTAAGCAAGAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCTTCAGGTAAAAACTGAAGTGCTTCAAGTGCGTC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCAAGCGCAGCAAGACTGGCCTCGGAATTACCTGAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAAAAAGCAGTTTGACCCCGCCGTGTTTTCTGTCCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAGTGGATGGATTTACCAACTTATTATGCTTGTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGAAATCTGGCAGAATCGGGACGTTTTACAATCCTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGATGGAAAAATATGCTGCTACATACCTAGATTCAAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCAACCTTTTTTAGGAGACTGGCCGGAAATGATTGGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGGTATAGTTACTATCTTTTCCCAAAACTTCTAGGGAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGTAGACAAACCCCGGACTCTGTAGGTGGGTTCTTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGTTACAGGAGCCTTTACTACGCTATTGGGTACG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGAAATATTCACCTGAATACTTTTGGAATCCCAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAGGGAGGGTACGTTAAACGGTTTTTATCCAAGTAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTATACCTGGTACAAGGTGAATGGGACTCTATTCAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTGGAAAGGCTAAACCCTTTACACAAGTGTATTCTG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AATACTTTTGGGCACTGGTAAATGCTGAGAAGCAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGTGTTGCAGGCAATGTCGGAGCTACCTTAAACAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CCGAATCGTCTGTATCAATGGCCTACACCGGCCGATA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAAGCAATTGACGGGGTTAGGGTTCCGTCACTAAATAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGCCAGAGTCTTGCAAGATAGCTGGCTGGAGTTGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCAGGATGTTGCGGCCCGCCGACACTATCTTTATAACTG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGAAGTGACAACCAAGGATGAACGGAAACCATTCG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCGACTTTACTGGCTTGCCATAATGCGGGTTTTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAGATTTTAAAATTTCTAAAAATGTTTCATTGTCTC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGACTACATGAATGCCAATGCGCCGTCCAGAAGTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTCAGAGAATGAGGACAAATTTAACGGGTGTAAAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AACAAAACCGAAGTCATCTACAATAACGAATCTTAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGAGTATTACTGTGATCTAGTTGCGTACTACAACAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGCAGGTGGAATCCAATGAGTCCGCGCAATCCAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGTTGAAGTATTTGCCGTGAGAGGGGGCGTTCATTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGATGATGTTTATCGTTGCGAATCTGATATTCTAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAGAGTAGGTGACTGTATTGATTTATTTTATCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGAAACTTCGTTTTCAAAGCCTCTTCTCATTGCG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATCAGAATCGTCTTACTTATGCGCCTTATATCGAATTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCATCCCCTCACACACCGTACACATAACGAAGGGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGAATTTACACTTGAAGAAATTGGAACGGATGGAAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAAGAGAAAGTGGATAACCGCTTTAAGCAACTGCAAGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GAAGTCATTTATAACAACGATTCTTATGTACTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCGATTCTCAGATAGGCTATAGGCTTAATGCCTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTATTTGCCTAGCATGGTTGCTTTGTCTTTGATA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAACTATCCTTGGTGACAGTAAGGCACATTACAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTATTAGGGTATGCATTTATGACTGTTATTTCTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAAATACTAGGCTATCCTTATTTTTTGTGTGTTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGACGATCAGCAACCAGAACAACCCCCTATTTTGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAATAATCCCAATGGATCGGTTTTCCATCCTTTGTATGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAAAGTGTCGAACTCTCTTTTTGTTAGACCTTGATAACCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGATGCAGTTGAATGTACTCTCTGACAGATACTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCAATGACGAAGAGTACGTTCGAGTAAAAGAAGCAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGTAGAGGAGCTAGTAAACGTAAATTAAAGGATTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAAAATTAATGCCTGATTCTCAACTGTTTCAGGTAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAATAACACATCCTGCGATGTCGTAGAAGATATTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CATTCGGGAACGGGCAAACGCTGTTGGAACATTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTTACACTGCAATCAGTACCCACTTGCCACCCTAAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGGGTAACGGTGGGATTCCCTTTCTCAATCTCGTTCAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGGCAGCAAAACTCGCAGCTTCATCTGCCGATTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAAGCACCTAAAAATACTTACCCATTGAAAGTCGC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTATAAGGAGAATGATTATAAATTCGTCTCTAGTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAACACGATTGAGGCTGAAGTTATCGTAGGCCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTCTACTATGATTCCCATGGCACTGGTTATTTTGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGAATTTGATTTCCATTCTTCCATTAACAACACCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAATCTGTATGAAACCTTTGAAGCGGGCGATAGCGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ACGAGATGGTTTAAGCCTTTCATACGCCTTCAACAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGATACTCGCAGGGCTGCTAAAGCCCTTAAAAGAAACGCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTATATCCGTGTTCTGAAGTGTTTGTTTGGAGGTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAGATTCGCATCCGTCTTGTTGATATGAATAGAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGACCTGGACTACTTTCCCTGTACCCTTCTGTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCACTTACGTTGTACGAAGCATTGCGTACCTATAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGAAGCAGGAAATCCCCTTAGACATCAAGACGTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAAAACATCAATCTGTTTAATGCCATCGGTTCTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AACTGCAAGATCATTGTAAATCTCTTCCCGATATTGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCGTCAGTAAATCTAATAATCTTGCGTTGTTTTCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCTTCGTCCTCACTGTTAAATCCCTTTTCTATTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCTAGTGAGTAATCGTCAGCGCAGTCTTTTAGTCTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATTAATCGAATTAACGGCGGATACGGCTGAGGTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG

>NC_019680|4|4|2809537-2815131|CRISPRCasFinder
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGTCTAAGGAGAAAGAATGAAGGTTTTAGTAAATATCTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATCTCTATGGGCATCTGAGTGGGGAGTCTATTTATG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATACCGGAATTATCGCTGAGATGCTTGACAATTTGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTCAAAGGAATCGGTGCTCGGTTCGTAAGCAAGAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCTTCAGGTAAAAACTGAAGTGCTTCAAGTGCGTC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCAAGCGCAGCAAGACTGGCCTCGGAATTACCTGAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAAAAAGCAGTTTGACCCCGCCGTGTTTTCTGTCCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAGTGGATGGATTTACCAACTTATTATGCTTGTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGAAATCTGGCAGAATCGGGACGTTTTACAATCCTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGATGGAAAAATATGCTGCTACATACCTAGATTCAAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCAACCTTTTTTAGGAGACTGGCCGGAAATGATTGGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGGTATAGTTACTATCTTTTCCCAAAACTTCTAGGGAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGTAGACAAACCCCGGACTCTGTAGGTGGGTTCTTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGTTACAGGAGCCTTTACTACGCTATTGGGTACG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGAAATATTCACCTGAATACTTTTGGAATCCCAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAGGGAGGGTACGTTAAACGGTTTTTATCCAAGTAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTATACCTGGTACAAGGTGAATGGGACTCTATTCAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTGGAAAGGCTAAACCCTTTACACAAGTGTATTCTG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AATACTTTTGGGCACTGGTAAATGCTGAGAAGCAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGTGTTGCAGGCAATGTCGGAGCTACCTTAAACAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CCGAATCGTCTGTATCAATGGCCTACACCGGCCGATA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAAGCAATTGACGGGGTTAGGGTTCCGTCACTAAATAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGCCAGAGTCTTGCAAGATAGCTGGCTGGAGTTGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCAGGATGTTGCGGCCCGCCGACACTATCTTTATAACTG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGAAGTGACAACCAAGGATGAACGGAAACCATTCG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCGACTTTACTGGCTTGCCATAATGCGGGTTTTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAGATTTTAAAATTTCTAAAAATGTTTCATTGTCTC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGACTACATGAATGCCAATGCGCCGTCCAGAAGTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTCAGAGAATGAGGACAAATTTAACGGGTGTAAAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AACAAAACCGAAGTCATCTACAATAACGAATCTTAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGAGTATTACTGTGATCTAGTTGCGTACTACAACAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGCAGGTGGAATCCAATGAGTCCGCGCAATCCAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGTTGAAGTATTTGCCGTGAGAGGGGGCGTTCATTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGATGATGTTTATCGTTGCGAATCTGATATTCTAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAGAGTAGGTGACTGTATTGATTTATTTTATCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGAAACTTCGTTTTCAAAGCCTCTTCTCATTGCG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATCAGAATCGTCTTACTTATGCGCCTTATATCGAATTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCATCCCCTCACACACCGTACACATAACGAAGGGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGAATTTACACTTGAAGAAATTGGAACGGATGGAAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAAGAGAAAGTGGATAACCGCTTTAAGCAACTGCAAGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GAAGTCATTTATAACAACGATTCTTATGTACTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCGATTCTCAGATAGGCTATAGGCTTAATGCCTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTATTTGCCTAGCATGGTTGCTTTGTCTTTGATA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAACTATCCTTGGTGACAGTAAGGCACATTACAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTATTAGGGTATGCATTTATGACTGTTATTTCTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAAATACTAGGCTATCCTTATTTTTTGTGTGTTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGACGATCAGCAACCAGAACAACCCCCTATTTTGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAATAATCCCAATGGATCGGTTTTCCATCCTTTGTATGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAAAGTGTCGAACTCTCTTTTTGTTAGACCTTGATAACCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGATGCAGTTGAATGTACTCTCTGACAGATACTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCAATGACGAAGAGTACGTTCGAGTAAAAGAAGCAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGTAGAGGAGCTAGTAAACGTAAATTAAAGGATTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAAAATTAATGCCTGATTCTCAACTGTTTCAGGTAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAATAACACATCCTGCGATGTCGTAGAAGATATTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CATTCGGGAACGGGCAAACGCTGTTGGAACATTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTTACACTGCAATCAGTACCCACTTGCCACCCTAAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGGGTAACGGTGGGATTCCCTTTCTCAATCTCGTTCAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGGCAGCAAAACTCGCAGCTTCATCTGCCGATTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAAGCACCTAAAAATACTTACCCATTGAAAGTCGC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTATAAGGAGAATGATTATAAATTCGTCTCTAGTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAACACGATTGAGGCTGAAGTTATCGTAGGCCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTCTACTATGATTCCCATGGCACTGGTTATTTTGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGAATTTGATTTCCATTCTTCCATTAACAACACCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAATCTGTATGAAACCTTTGAAGCGGGCGATAGCGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ACGAGATGGTTTAAGCCTTTCATACGCCTTCAACAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGATACTCGCAGGGCTGCTAAAGCCCTTAAAAGAAACGCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTATATCCGTGTTCTGAAGTGTTTGTTTGGAGGTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAGATTCGCATCCGTCTTGTTGATATGAATAGAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGACCTGGACTACTTTCCCTGTACCCTTCTGTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCACTTACGTTGTACGAAGCATTGCGTACCTATAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGAAGCAGGAAATCCCCTTAGACATCAAGACGTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAAAACATCAATCTGTTTAATGCCATCGGTTCTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AACTGCAAGATCATTGTAAATCTCTTCCCGATATTGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCGTCAGTAAATCTAATAATCTTGCGTTGTTTTCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCTTCGTCCTCACTGTTAAATCCCTTTTCTATTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCTAGTGAGTAATCGTCAGCGCAGTCTTTTAGTCTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATTAATCGAATTAACGGCGGATACGGCTGAGGTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG

>NC_019680|4|3|2809537-2815131|CRT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGTCTAAGGAGAAAGAATGAAGGTTTTAGTAAATATCTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATCTCTATGGGCATCTGAGTGGGGAGTCTATTTATG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATACCGGAATTATCGCTGAGATGCTTGACAATTTGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTCAAAGGAATCGGTGCTCGGTTCGTAAGCAAGAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCTTCAGGTAAAAACTGAAGTGCTTCAAGTGCGTC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCAAGCGCAGCAAGACTGGCCTCGGAATTACCTGAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAAAAAGCAGTTTGACCCCGCCGTGTTTTCTGTCCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAGTGGATGGATTTACCAACTTATTATGCTTGTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGAAATCTGGCAGAATCGGGACGTTTTACAATCCTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGATGGAAAAATATGCTGCTACATACCTAGATTCAAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCAACCTTTTTTAGGAGACTGGCCGGAAATGATTGGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGGTATAGTTACTATCTTTTCCCAAAACTTCTAGGGAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGTAGACAAACCCCGGACTCTGTAGGTGGGTTCTTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGTTACAGGAGCCTTTACTACGCTATTGGGTACG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAGAAATATTCACCTGAATACTTTTGGAATCCCAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAGGGAGGGTACGTTAAACGGTTTTTATCCAAGTAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTATACCTGGTACAAGGTGAATGGGACTCTATTCAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTGGAAAGGCTAAACCCTTTACACAAGTGTATTCTG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AATACTTTTGGGCACTGGTAAATGCTGAGAAGCAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGTGTTGCAGGCAATGTCGGAGCTACCTTAAACAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CCGAATCGTCTGTATCAATGGCCTACACCGGCCGATA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAAGCAATTGACGGGGTTAGGGTTCCGTCACTAAATAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GGCCAGAGTCTTGCAAGATAGCTGGCTGGAGTTGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCAGGATGTTGCGGCCCGCCGACACTATCTTTATAACTG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGAAGTGACAACCAAGGATGAACGGAAACCATTCG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCGACTTTACTGGCTTGCCATAATGCGGGTTTTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAGATTTTAAAATTTCTAAAAATGTTTCATTGTCTC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGACTACATGAATGCCAATGCGCCGTCCAGAAGTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTCAGAGAATGAGGACAAATTTAACGGGTGTAAAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AACAAAACCGAAGTCATCTACAATAACGAATCTTAT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGAGTATTACTGTGATCTAGTTGCGTACTACAACAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGCAGGTGGAATCCAATGAGTCCGCGCAATCCAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGTTGAAGTATTTGCCGTGAGAGGGGGCGTTCATTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGATGATGTTTATCGTTGCGAATCTGATATTCTAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAGAGTAGGTGACTGTATTGATTTATTTTATCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGAAACTTCGTTTTCAAAGCCTCTTCTCATTGCG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATCAGAATCGTCTTACTTATGCGCCTTATATCGAATTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCATCCCCTCACACACCGTACACATAACGAAGGGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGAATTTACACTTGAAGAAATTGGAACGGATGGAAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAAGAGAAAGTGGATAACCGCTTTAAGCAACTGCAAGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GAAGTCATTTATAACAACGATTCTTATGTACTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCGATTCTCAGATAGGCTATAGGCTTAATGCCTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTATTTGCCTAGCATGGTTGCTTTGTCTTTGATA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAACTATCCTTGGTGACAGTAAGGCACATTACAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTATTAGGGTATGCATTTATGACTGTTATTTCTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAAATACTAGGCTATCCTTATTTTTTGTGTGTTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGACGATCAGCAACCAGAACAACCCCCTATTTTGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAATAATCCCAATGGATCGGTTTTCCATCCTTTGTATGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TAAAGTGTCGAACTCTCTTTTTGTTAGACCTTGATAACCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGATGCAGTTGAATGTACTCTCTGACAGATACTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCAATGACGAAGAGTACGTTCGAGTAAAAGAAGCAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CGTAGAGGAGCTAGTAAACGTAAATTAAAGGATTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATAAAATTAATGCCTGATTCTCAACTGTTTCAGGTAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAATAACACATCCTGCGATGTCGTAGAAGATATTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CATTCGGGAACGGGCAAACGCTGTTGGAACATTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GTTACACTGCAATCAGTACCCACTTGCCACCCTAAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGGGTAACGGTGGGATTCCCTTTCTCAATCTCGTTCAG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TGGCAGCAAAACTCGCAGCTTCATCTGCCGATTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CAAGCACCTAAAAATACTTACCCATTGAAAGTCGC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTATAAGGAGAATGATTATAAATTCGTCTCTAGTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	CTAACACGATTGAGGCTGAAGTTATCGTAGGCCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTTCTACTATGATTCCCATGGCACTGGTTATTTTGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGAATTTGATTTCCATTCTTCCATTAACAACACCT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAATCTGTATGAAACCTTTGAAGCGGGCGATAGCGA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ACGAGATGGTTTAAGCCTTTCATACGCCTTCAACAGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AGATACTCGCAGGGCTGCTAAAGCCCTTAAAAGAAACGCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTATATCCGTGTTCTGAAGTGTTTGTTTGGAGGTCA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTAGATTCGCATCCGTCTTGTTGATATGAATAGAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTGACCTGGACTACTTTCCCTGTACCCTTCTGTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCACTTACGTTGTACGAAGCATTGCGTACCTATAAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAGAAGCAGGAAATCCCCTTAGACATCAAGACGTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AAAAACATCAATCTGTTTAATGCCATCGGTTCTAA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	AACTGCAAGATCATTGTAAATCTCTTCCCGATATTGG
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	GCGTCAGTAAATCTAATAATCTTGCGTTGTTTTCGT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TCTTCGTCCTCACTGTTAAATCCCTTTTCTATTTT
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	TTCTAGTGAGTAATCGTCAGCGCAGTCTTTTAGTCTA
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG	ATTAATCGAATTAACGGCGGATACGGCTGAGGTTAC
GTTTCCATTCAATTGTTTTCCCTAGCGAGTAGGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019680.1\|WP_015125464.1\|2806448_2806715_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125469.1\|2816616_2816892_-\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	unknown
NC_019680.1\|WP_015125471.1\|2818563_2818944_-\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906
NC_019680.1\|WP_015125465.1\|2808301_2808709_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379324
NC_019680.1\|WP_076611252.1\|2800674_2801734_+\|ISKra4-like-element-ISSysp8-family-transposase	unknown	unknown	unknown
NC_019680.1\|WP_156804814.1\|2800222_2800408_+\|transposase	unknown	unknown	gnl\|CDD\|376573
NC_019680.1\|WP_015125467.1\|2815318_2815597_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019680.1\|WP_015125476.1\|2822607_2823777_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_019680.1\|WP_041430870.1\|2802298_2805595_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226993
NC_019680.1\|WP_015125468.1\|2815604_2816588_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019680.1\|WP_015125470.1\|2817014_2818547_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_051021042.1\|2806772_2808308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226993
NC_019680.1\|WP_041431588.1\|2821801_2822596_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_019680.1\|WP_156804816.1\|2801818_2801986_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125473.1\|2819293_2821330_-\|hypothetical-protein	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NC_019680.1\|WP_015125472.1\|2818936_2819269_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_019680.1\|WP_015125474.1\|2821333_2821738_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_019680.1\|WP_156804818.1\|2805631_2805805_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125466.1\|2808708_2808999_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125463.1\|2806036_2806330_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019680.1\|WP_015125472.1\|2818936_2819269_-\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.02176e-19
NC_019680.1\|WP_051021042.1\|2806772_2808308_-\|hypothetical-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.11879e-08
NC_019680.1\|WP_015125471.1\|2818563_2818944_-\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	2.94591e-19
NC_019680.1\|WP_041431588.1\|2821801_2822596_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	3.14848e-36
NC_019680.1\|WP_015125465.1\|2808301_2808709_-\|AAA-family-ATPase	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	2.24427e-11
NC_019680.1\|WP_015125473.1\|2819293_2821330_-\|hypothetical-protein	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.46206e-19
NC_019680.1\|WP_156804814.1\|2800222_2800408_+\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.19489e-09
NC_019680.1\|WP_015125467.1\|2815318_2815597_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.65684e-27
NC_019680.1\|WP_015125476.1\|2822607_2823777_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.3075e-64
NC_019680.1\|WP_041430870.1\|2802298_2805595_-\|hypothetical-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	9.36203e-26
NC_019680.1\|WP_015125468.1\|2815604_2816588_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.10398e-107

>NC_019680.1|WP_015125466.1|2808708_2808999_-|hypothetical-protein
MLNVANDKLFNGEFHSTLEGLDLYESALSFEIKTFPDLASDEERKDLELVRSIRNEYREKLLEMEKELIQEWSGKSSIHDQIVACIQENDFTGLAF
>NC_019680.1|WP_015125465.1|2808301_2808709_-|AAA-family-ATPase
MLLILRGLPGAGKTTLAKLLTKHECSADDFPNLYQNGQLQKILVPASHAWCQQSIKEYLELYDNEEIIAVHNTFCQNWEIKPYIEMAQKYGHDFSVVTVEGNYGSIHNVPPEVMESMKERWESFSLDVINAETPC
>NC_019680.1|WP_051021042.1|2806772_2808308_-|hypothetical-protein
MLKPKEQGLANLAAIEAVQRLDSGEKDPALFEALKQFNGWGSIWQVFREDANGWAKDCQKQLKILLSSEEFSAARASILNAHYTDPEIIKATWRVIQGLGFTGGTALEPACGTGLFIRHAPPQLPIQWTGVELDPIPAKIAQYLNPTATIYNQGFETVVMPDDLFDLAISNVPFGSYKVHEPRYNKLGVYIHSHFIAKMTDLVRPGGLIVVISSTGTLDTDQNEQFREWLSRKAKLVHAVRLPNNTFKEMAHTEVTTDLMFFQKVREPGLAVWINSKVTKETEQLGQNLKLNAYYIQNRQRLLGKLCLATLYGGETLGLESTGLNIPEAIIKSAAWVLPCYKSGPHNTLRTIPPELQYLKSYQFVRHNNRIYQRVGSTLVQIDNHKDQIIDLMELSEILEYLISIQGTASEEHLAIEQQTLSKKYDSLIRKYGYINSKNNETVFGDDPRYPGLQSLETTSLKKADIFTKRTSKIYQVPDSFQSAEEALIHCLNVKGRVDLDWIKEHYCPAE
>NC_019680.1|WP_015125464.1|2806448_2806715_-|hypothetical-protein
MTTIYFNPTPVIPIDNPFHKMVGVPDGYLLACTSDACFCNSIFQDVVARFRAIADNPNVDVTIIRSILFVSPSVAAKVYANPKLALLR
>NC_019680.1|WP_015125463.1|2806036_2806330_-|hypothetical-protein
MKWKAELKIRDLITDENLEGDALKHRCKELAKRLNQFLQKQTSLFLQNPYGKDDFEEIIFSFESYIQTLDEFNEELKNLWDWCDLYGVWVPFVKKPE
>NC_019680.1|WP_156804818.1|2805631_2805805_-|hypothetical-protein
MVKQYDLWLWQRLSQLAKAEGGIESEARKLRNIIGSGKYCEEDRERAIEYVKSHDAD
>NC_019680.1|WP_041430870.1|2802298_2805595_-|hypothetical-protein
MDAVTQELQDKGLIYFDPTQNQWVTAEEYLSGHIKQKIKAAQEAGLSKNVADLKKNLPLAVMPDAPPDVKAECAKALGIELSELSEPEFEKLMANTLSIRFSSSWVPAAIYQTFLRQLLNLNNINVHCSKTSSTWTVVNSGASSSVENNRTYGARYDGIKLSEIALNLKDPVVYDYDSELDKNILNPTETEQCRNKTGLIKDAFLNWIWTDTGRAIELTKLYNQTFNTQKPRRYNGSHLTFLGMNPNISLREHQKNQVWRIIQEQSTGIFAAVGSGKTYTMITACMELRRLKLCFKPVIACLNSTVKQITTEAKLLYPNAKILSEPESLSKEKRRRFLSRIATGDWDIIIISHTHFFSIRIDKEAELNFLYEELNKIRTEIRLSDCRDATKTLERQKNNLEARIKKVTESERKDDGFTFEQLGVDCLMLDESQQFKNLSFITKQRNIAGLPNSHSQRAQDTCMKIHYLLSNGGRVVFSTGTPISNSMAELYTQMRYLMPDEMERLGINHFDAWCSLFGETVTAPEITPAGKYKVKNRFAKFVNLPELMNLFRKVADITTEDMIDLPKPKVNLINPVSPPSPEQASYMANLAKRADRIQGRMVEPDIDNMLKVTSDGRKCSLDPRLVGAGPNFQGSKLDELIFNVWTIWKLSTPIQGTQIIFCDLREWIYDWIKDGLIQMGIPNHQIQIAQEVKDKKTLYGKVNRGEVRVIIGSTQTLGTGVNVQQRMIAQHDYDAPWRPSDVVQRLGRTARQGNMFKKVWVFRYVTTGAKSLASFDSFAWQVLETKAKFIAQVWQSNDLPRTAEDISGQAMTYAQVKALATGDPIMLEQAELQQEQSRLNLLYKAWSNEQTRFHYDKQQAPKLIKELPAKIKHLESILNNREIIILDQKYNSLEDAANIIQDLRKAQLGWGKELGSIYGLPLRCEWQEKNVFFLDNTFIKVGYTETILDSLKRITNRIPDTLERLKQNLDGAYKTLKQNAEPFAYSEQLKAINERLKEIHDIIFKPEEAAPGEDDTSETEELEQPEHNVITTGRHSFDYLKERELPEWANDMMAIMPEPETNVIPFPIQKEIKPLTVITPTRFEAITRDESILQGCLF
>NC_019680.1|WP_156804816.1|2801818_2801986_-|hypothetical-protein
MITDKINPYHKIDDMFYVVFIKSHSPGAASIAIGISAKDIGISAKEFNSNFELIQ
>NC_019680.1|WP_076611252.1|2800674_2801734_+|ISKra4-like-element-ISSysp8-family-transposase
MDRQTQSELQTHLNAIAAILFKEADPADLKTLGGIEKSVRGLAQEHVLPQLGIFFIDSATETRPGKTRVITSILGELHLSQSQAEQLHVKPRSRWSPYLERCCLLVSANASYQRAEEDIEVLTGITVSHSTLQRLVQRQAWPEVVLTRPIEEMSLDGGMIRLRTEAGTPCEWRDYKALAIHDQAGVAFFKDNEGLIHWANRQPRTTPFTGLGDGHNGVWNILTQIGTTRERIEILDWFHLMENAHKVQATPTQLKAVRDHLWQGQVTLAIQVLQNYRCLGASTFIQYLRHHQHRIIHYQAWQAAGHSIGSGQVESFVKQISLRVKLPGAQWLPQNVPKLLKHRCAYLNGAFAP
>NC_019680.1|WP_156804814.1|2800222_2800408_+|transposase
MKTNLPGMSDEEISELYRHRWTIENLWKFLKMHLSLDKLIPNSLDDITTQIYMILITYLIL
>NC_019680.1|WP_015125467.1|2815318_2815597_-|CRISPR-associated-endonuclease-Cas2
MLLYIIAYDIPCNKRRKKVSDLLEGYGTRVQYSVFECILSNKKYCELKRRLLKRVNVNEDHLRFYPLSKHTLETIEVWGGSPVINQATSTII
>NC_019680.1|WP_015125468.1|2815604_2816588_-|CRISPR-associated-endonuclease-Cas1
MKSLYVSQQGCYLCLSQEQILIKKGKTTLNQVQLPLVEQILIFGKSQVTTQLIRACLAQEIPILYLSRMGYCYGRVLPIQRGYRQLSRYQQLLTPVDRLLAAQAIVTAKLKNSRVFLMRHHRSHPSTNLEMAIQQLGYLITKVPQTDTIERLLGTEGAGAAIYFATFGNCIQNPNFIFIARTRRPPGNPINAMLSFGYQVLWNHLLSLIELNDLDPYQACLHQASERHAALASDLIEEFRTAIVDSLVIYMINRNMIDADQDFEFINGGCYINDSGRKKYLQAFLNRMEEAIGPDHQLRWDSLMQQVKRFREFAYAPSRKYQPYLIR
>NC_019680.1|WP_015125469.1|2816616_2816892_-|hypothetical-protein
MYISHRAIQIRNLTQATVNGSLTLIILLIAPLGLAAVIINTVLVTLASYLTATISDRVIYYLQKDSIRAELVNNPHESKIQKRSQSSDLDR
>NC_019680.1|WP_015125470.1|2817014_2818547_-|hypothetical-protein
MKTLMITVGTRQVGWQCSNGIVRSLGADGDRGHPHHIDELYAEFGQERGFHSDAPNNELRWASCHLGELIYHLAEVSKDFSPVELLMDGVILSQEVKNGLDRVILWGTNQPDTVSWRFRRSDTLWLAELMAAKIRQSYPDLIVKTWNPLLDADNIEQIQKQLMEFLVNDILVEASTNDEPHILQIQTKGSIPKIANSLEICAAALMRKCVVEHVIPQEPEEAYPVVSEGHSSASPASHYSLMSLGEYFWPVERERILSAWKRGDFAEAKVWLAAHTDRYPVVYALAEYLTLASNWELGKALNNFSEFLNKHPQVTGITKTQRNQWLQKIQIINKPEERQTPESKFTILWELRLFISLNFQRENYTAAFMQFFQILERLLFWRFKREKWIKNGYIVIAENKKHISSKNYKATFGELRMGWQALMGLQDQSPSIQILKWMNEKRNAVVHSNQSVSIDELTSIVTEQCESSKDMQLAERLISFIEHFCPEKLEPPDNTLLEDLYHWGLEQLES
>NC_019680.1|WP_015125471.1|2818563_2818944_-|DUF5615-family-PIN-like-protein
MFSFYVNENLSSIIVKELRHLGYDVLTSYEAGNANQKVPDEQVLSLATEQQRSVITHNRDDFLKLHRSGFSHAGIIVLKEDRERLKQVFVLHQYLISQESLQGRFIRVLRQNQQGLSEAQFIIKEY
>NC_019680.1|WP_015125472.1|2818936_2819269_-|DUF433-domain-containing-protein
MNSKLVESLTDAIIALPKDDYDLFQNTLVSKTIQKTPGVCGGYACIRDTRIPVWTIVSLIQQGANDQELLIDFEGLTGLDLLICRKYYQTHLEEIDTLILSHAQEKDWDV
>NC_019680.1|WP_015125473.1|2819293_2821330_-|hypothetical-protein
MVFERPKRPGQSQSKPQALQRNNYAATQRPQPQASGGGRAGNPPRNPGQGGPNRNHPGGNNEPIPSPWLEHPLDPQPDPDSTASFVEYLRWMREVNRNPNKDGKDSTDPNTKVQIMQMAMGQDYHKRLEKLHDRTQLIAGQANCFEVTSSWRIRVGGHRGPESILLPAFDALGMPYIPSSTLRGVARTQAIREIMERENITDWREAEKRIAPYFGSLDAKDNANKAGKVIFLDAYPMPSSKTAGLEVDMANNIWNWGDGNNLPGYSPNPNPFFSLKKSKFLIGIKQTGACDVQTFNQVKKWLIQGLAAGIGSQVNTGYGVLSTNNKVPPGFFRVDFTLEGQLIHSQQKIDLQQPFKIERDGKLKRNNKGELVPNTASQAEVRSVAFKSMLRYWFRAFTLGVMPVNTVKELEAEIFGDINIKPKPKRGYLIVRIENDQLVQMKPRPNQQGRQEACGKQLGTLVLDYSTEVSAQKGENLAKLSKSLTWLMFHLGGIGQGARRPCYSRQNRNNPKPPWWRGATLKPERNDNFWELPKTPQAMHSRFRQHLDQFYQALSQFTQANINPRNLRPNGVVRNNQWKEAIDAHCRILVCSGREDYGKPYALAQLHHPRFKQGNYYDGNLCGQVGGPGGVKPSPVWIADLEHYQIVTVFGATEAPRSRFIEELNTNAEACFQIFPFT
>NC_019680.1|WP_015125474.1|2821333_2821738_-|hypothetical-protein
MEIFDPRAIAQPVYQKLTQLRGNLGKEDPVVKQQKGQAVQLYTYIATWGLLRLKAEEKALKDQKGKKDVVIAFFETIQELWAVPNKDIASENGLKTLTELEPEDYLGITGLGLKVAQEFSFWATAIYHDVSGEE
>NC_019680.1|WP_041431588.1|2821801_2822596_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MHLVYLYLLSPLHTGGTTQEGNLLGIARESHTELPYIPSSSIRGRLRASLSDDQAEQYRLFGNEISAGSLEQGAIWIGDGSILWLPVPSLSHGVIWISSPLLLKRWARLSKVDCSIPDVSVRCFVHPILATGKPVYLKDAILKPDQLQAWDEWQKFIPISDKSDIKRVIVLPDKHCATLIQMSLWRQVKIKLDEHKSVSSGSFRYEEAIPPDTLMYFPWGVTAQAKQQQDTTRVFEGILREHSLLQIGGQESLGRGFVQAWLAT
>NC_019680.1|WP_015125476.1|2822607_2823777_-|CRISPR-associated-protein-Cmr3
MYWYTLTPLDILLFRDAKPFTPGERAWAGSVFPPNGHTIAGAIRGLLNTDQSFVLKGPFLCQAQTLFLPRPLNYAGVQRLAPIRWLQEQDENHSSIQMEWDRRFPTPLLPEGDTNPEEDALKVQDQQNQYRQYLPSDIVLNLLKGKSLTATDSSCPDGETPVPWSVESRPHNTLESGSRQVKQSEGYFVENGIRLHQGWSLAIAVDTLTHTQIEKIGSLVPMRLGGEGHQVLVERCSELDAQWQSLQGQSLHNYNTGNTALEFNPKQARSLAYLVTPGVFERKHSDVATCRAWPWEWKLANPPNPNQTRGPLVSVATERPVPISCRFREGGSSIPAPQVFAAPPGSVYYLERPEPLFQDQASVNGRPNKVHNWRQLGYSELFWIPYGVN

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Crispr_ID: NC_019680_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019680_5

2842046-2842143

TypeII

Consensus_repeat	Method
TCTTTAGTTAGATAGATTCCGAA	CRISPRCasFinder

1 spacers

c2c9_V-U4,Cas9_archaeal

The CRISPR arrays of NC_019680_5

>merge|NC_019680|5|2842046-2842143|CRISPRCasFinder
TCTTTAGTTAGATAGATTCCGAAGTCTCCTTCTACTTCGACCCAGACTCCACCTTCTTCTAAAGCCGCCGCCTCGTCTTTGGTTAGATAGATTCCGAA

>NC_019680|5|5|2842046-2842143|CRISPRCasFinder
TCTTTAGTTAGATAGATTCCGAA	GTCTCCTTCTACTTCGACCCAGACTCCACCTTCTTCTAAAGCCGCCGCCTCG
TCTTTGGTTAGATAGATTCCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019680.1\|WP_015125494.1\|2837669_2837870_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_156804824.1\|2836722_2836872_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125489.1\|2834602_2835745_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_019680.1\|WP_015125507.1\|2849190_2849856_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125505.1\|2848070_2848403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236972
NC_019680.1\|WP_156804830.1\|2843233_2844058_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274979
NC_019680.1\|WP_015125495.1\|2838860_2839052_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125504.1\|2846214_2847492_-\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|379519
NC_019680.1\|WP_015125499.1\|2841100_2841391_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125503.1\|2844974_2845388_-\|SprT-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|214794
NC_019680.1\|WP_015125509.1\|2850501_2851230_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125510.1\|2851286_2852033_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125496.1\|2839776_2839977_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125498.1\|2840143_2840512_-\|DUF2493-domain-containing-protein	unknown	unknown	gnl\|CDD\|378473
NC_019680.1\|WP_015125491.1\|2836158_2836455_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_156805054.1\|2848492_2848888_-\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|224442
NC_019680.1\|WP_015125508.1\|2849864_2850482_+\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125490.1\|2835794_2836196_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|224854
NC_019680.1\|WP_156804826.1\|2837030_2837438_-\|hypothetical-protein	unknown	unknown	unknown
NC_019680.1\|WP_015125501.1\|2844256_2844424_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019680.1\|WP_015125498.1\|2840143_2840512_-\|DUF2493-domain-containing-protein	gnl\|CDD\|378473	pfam10686, DUF2493, Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.	1.16183e-17
NC_019680.1\|WP_015125489.1\|2834602_2835745_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.19829e-55
NC_019680.1\|WP_015125505.1\|2848070_2848403_-\|hypothetical-protein	gnl\|CDD\|236972	PRK11761, cysM, cysteine synthase CysM.	0.00516419
NC_019680.1\|WP_156805054.1\|2848492_2848888_-\|thermonuclease-family-protein	gnl\|CDD\|224442	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair].	4.47529e-22
NC_019680.1\|WP_156804830.1\|2843233_2844058_-\|hypothetical-protein	gnl\|CDD\|274979	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system. [DNA metabolism, Restriction/modification].	1.20899e-27
NC_019680.1\|WP_015125490.1\|2835794_2836196_+\|IS200/IS605-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.77439e-47
NC_019680.1\|WP_015125504.1\|2846214_2847492_-\|HNH-endonuclease	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	3.13502e-102
NC_019680.1\|WP_015125503.1\|2844974_2845388_-\|SprT-like-domain-containing-protein	gnl\|CDD\|214794	smart00731, SprT, SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.	1.32602e-11

>NC_019680.1|WP_015125499.1|2841100_2841391_-|hypothetical-protein
MRKAMIRDDKNGKRTVKVFDFSWNGLVKEWNELDRKFRKVRLKVEMGKNFKARRYSYAKTVEKMVWPVLVLTISCGFVAITENIQENQKVEQQQQR
>NC_019680.1|WP_015125498.1|2840143_2840512_-|DUF2493-domain-containing-protein
MAPFRVVIAGSRQFSDFGLLCERLDALLANKLAQGFEVVVLSGACRGADALGERYAQERGFAVERFPAEWAAFGRSAGPVRNRSMAQACDAAVVFWDGVSRGTANMVSEAQAAGKPVRVVRV
>NC_019680.1|WP_015125496.1|2839776_2839977_-|hypothetical-protein
MTVYTKNTFKKLWESEGGGGITFDDIADCAKAWGITNSPRSKSMSRVGNQVLIAAGCEPYFDVESE
>NC_019680.1|WP_015125495.1|2838860_2839052_-|hypothetical-protein
MDTTEALRSESKNPIFKPFYSEKYGCEAYYCDPEETEAFAKFLRRRGYLAEQITESIVLIHDA
>NC_019680.1|WP_015125494.1|2837669_2837870_-|hypothetical-protein
MEVGEIVSAEVPSESVKDGWHKITGTKIVTGEITKVKNDLIWIESEGQKYCVTEGECWKPGHVKQG
>NC_019680.1|WP_156804826.1|2837030_2837438_-|hypothetical-protein
MILNSNAAHTPAPTPLHSASTSGRLTPTLHSFLHSTFATLTSRSRSGRSIPSLLCSSPFRPKSHSLIEVLPPGQRTSTEAGYLARMKWHIAQASIGGSRPTVKGQRNTRQIPLNKVAKPSPTKAVMQESFRSFAA
>NC_019680.1|WP_156804824.1|2836722_2836872_-|hypothetical-protein
MPRKVSANYFEVLFGRNYKAAVKAANEFNGQLIIIRHENSKPLYRVRFN
>NC_019680.1|WP_015125491.1|2836158_2836455_-|hypothetical-protein
MIHWQINEKDTEAIKWVKEKFEKEPGKVIAAYGTEEECTVKKNDLVNSQQWVNQRKARISHVSPQHYGDEKTIIIFIENFGSKTPSFRTAFLEIVCTF
>NC_019680.1|WP_015125490.1|2835794_2836196_+|IS200/IS605-family-transposase
MTTQFRHERHSVSDLKTHLVCVTKYRRSILTSESLAVLEKSFRDVAAKMDFQVLEFNGESDHIHVLIEFPPKLSISQIVNALKGVSSRRYGQAGFSKPFGKAALWSPSYYASTVGGAPLEILKKYIQSQEKPS
>NC_019680.1|WP_015125489.1|2834602_2835745_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKARYQYRFYPSDQQRELLARLFGCVRVAWNDALAFCKASDKLPRYNELSAKLTQDKKTAARAWMSEVSAVPLQQALRHLDKAYQNFFNSRNGKRKGKGVGVPRFKKKSNQQSAEFTKAAFSVKDGQVYLAKIGTIQPILSRALPSEPSSVTVIKDSAGRYFVSFVVDVQPIETQAENQSLGIDLGLKVFATMSNGQKAFSPDYSKIDRKIRKLQRKLAKQQSGSKRRDRTRLRIAKLHNALADTRKDFLHKLSTQVVSTNQTIVLEDLNVSGMVKNRKLSRVISLQGWRQFRMLCEAKATKLNREFRIIDRWEPTSQVCSCCGFRWGKLDLSVRTVTCVNCLETHDRDENAAVRIEQVGMGHRHDSKRTSRDCKTASAA
>NC_019680.1|WP_156804830.1|2843233_2844058_-|hypothetical-protein
MMIHPSQSHLDFGCGYGKDTEWLNELGFKSKCYDPYYFPTPLEPADIVTMTYVLNVIETWEERVETLKKAWELAQKTLIVADHVKSSNKSQKENWSGREVYTYKFSHNELKSFVEIVTQTESEWLTGDKLVIHKSAKPIKVWSQPEIKTLIQSFKKEWIAPKYANIRKYNTQKWTYYRIESKLRNLPGKSGPVSQLHLKDDLKIKWAIKAMIRRNMIMMAKLHCNTMIYCDELNGWKPNLYSGICGSLRESELMKEVLHEVMPYIQESDMPKSA
>NC_019680.1|WP_015125501.1|2844256_2844424_-|hypothetical-protein
MRQFAFTYKTLTGLKSVIIKTNGYFNPVKIWNELKKEEDFVRPAGFDELSPQSAN
>NC_019680.1|WP_015125503.1|2844974_2845388_-|SprT-like-domain-containing-protein
MLIFVGIDQKTKVRIRTIHQGIMEKLKRQFSAKIIAMITEKPITVKYNTRLKTTAGRASKDKIELNLPLLSENPSELPQVYAHELAHTICCRLWPKKRIGHDRNWKLIMTKMGFQPRSHGHKAHSQKNPERRYQIPL
>NC_019680.1|WP_015125504.1|2846214_2847492_-|HNH-endonuclease
MSNFIFVLDTQKRPLDPVHPGKARHLLNQGKAAVYRRFPFTLILKEAHPDVPVQDLELKLDPGSKVTGIAIKQGNKIIFGAELQHRGQQIKDALLSRRQLRRGRRNRKTRYRQPRFLNRNRPDGWLAPSLKHRVDTVLTWVNRLRNLAPLGSIAQELVRFDLQKLQNPEISGIEYQQGELQGYEVREYLLEKWGRKCTYCGTKDVPLEVEHIHPRSRGGTDRVSNLTMACHACNQSKGNQDIRDFLFGKPELLQRILRKAKAPLKDAAAVNSTRWALFNALKATGLPLTTGTGGQTKFNRTRLDLPKAHWLDAACVGQVDALKVLTSKPLLITAKGHGTRQMCGTDKFGFSTRHKSRVQIHKGFQTGDIVRATVTAGKKIGFYVGRVLCRASGSFDIATATGRVAGISHKYCKAMHKKDGYAYVF
>NC_019680.1|WP_015125505.1|2848070_2848403_-|hypothetical-protein
MDKNYTGICQASPRSTHPEIQGQWLTLIEGVITNIFDNPDEAEKHFLSQIWEKSDNYYWIGQITHNVIEVLKLPQDSLGMYVLITNKKVQIIESQLEAEDIAEEFERYTS
>NC_019680.1|WP_156805054.1|2848492_2848888_-|thermonuclease-family-protein
MHDGDTIRATNGNEEIRVRFACIDAPELKQPLGEASRNTLRNILKKADYRVDLRITNTDRYGRKVAEVWTGNTLVQETMTRKGMAYAYRKFANNCPSFAKVDQAEQEARKEGVGVWKSDQIKPWDFRRMNR
>NC_019680.1|WP_015125507.1|2849190_2849856_+|hypothetical-protein
MQRLMVALLAVMAMAMTAGEVFANPFKIPNSTGDRVTFRMDGLTPGSEIQVGAGDTKAKLTAYTINNYGRISPPAGATKVRKWGDTTWINLSSATDLTDSVKVATVQGQRQFAPKVAGQNLPTIPSFIKLGTAFYWNPGTTLPTDGIFIEFDVPVQRVAKVNACGQLSISVSSVNGSVNYVPAVTVNGTSYTIASLPVGNPANLSRCVKYGESTYVRYVPQ
>NC_019680.1|WP_015125508.1|2849864_2850482_+|hypothetical-protein
MLRPVLLALFWLLGALPVVANPVRVPSASGNSMRVSFEGFNPNSEVQVGVGLRRYRASLSIKQGGMSFFRFTSPEGATAVRVVGQENWTALSLISDQTANLRVTGTGEQRQFLAKNPKDFWSTFVPSFNGYMKVGRSFFYRGNGDSIMFEFNVQAYRLAKADACGRISLLYPVSGSRAISSVTVGQTFYRLDSVPTASRLPECSQ
>NC_019680.1|WP_015125509.1|2850501_2851230_+|hypothetical-protein
MFNRIFVLTALLSLLPTAVFAAPTKFTNPTTNRAEVNITGFTAGQEVPIEFQSVTKSVKASCLIGSDRYALVSSDVAAEINQPFEAFATAGGTPAIKVNGGENIWGSEEGMTNGRCAFVNGTRVFVAPNAQGQAVPVTGNYGPLFVTSTVNAEGNVTGKSSLWVRVPTWDAVPVQIVGGNTQKKYKANSCGIVRFAETETAPLAPTFKVGSTIYTVANLSTAYPPKCYKTGETSYTLFVPAQ
>NC_019680.1|WP_015125510.1|2851286_2852033_+|hypothetical-protein
MLKTLSLSLFWVFLPLVALAQPTKFMNPTTNRSEVNITGFSPGQEVTVELQGVTKTVRGSCSVGSDIYALLSSDGIGEFQEPFNAYLAATGNQPEIRRGGVNLGNLLDVEPIYNGRCSFVNGARVLMGVYGTERMTVIPQSQINGVDLLMFTPVDQNDNPVPGSKRQLWVRVPNWELTPIQIVGGFLERKYKANNCGIVRFAETATSPLPETFKLASTVYQVSNLSTAYPPKCYKTGETSYTLFVPAN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019680_4	4.27\|2811456\|36\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	2811456-2811491	36	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	254090-254125	8	0.778
NC_019680_4	4.69\|2814486\|35\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	2814486-2814520	35	KT997869	Uncultured Mediterranean phage uvDeep-CGR2-AD3-C76, complete genome	13118-13152	8	0.771
NC_019680_1	1.17\|1106262\|36\|NC_019680\|CRISPRCasFinder,CRT,PILER-CR	1106262-1106297	36	NZ_CP041714	Legionella geestiana strain HL-0438-4026 plasmid unnamed1, complete sequence	20668-20703	9	0.75
NC_019680_4	4.27\|2811456\|36\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	2811456-2811491	36	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	16436-16471	9	0.75
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	KX119206	Helicobacter phage UKEN32U, complete genome	16703-16736	10	0.706
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	KX119177	Helicobacter phage SwA626G, complete genome	17369-17402	10	0.706
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	KX119174	Helicobacter phage UKEN31U, complete genome	16703-16736	10	0.706
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	KX119205	Helicobacter phage DeM53M, complete genome	14251-14284	10	0.706
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	MK448704	Streptococcus phage Javan213, complete genome	31536-31569	10	0.706
NC_019680_4	4.46\|2812820\|35\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	2812820-2812854	35	NZ_CP015884	Enterococcus faecalis strain sorialis plasmid Efsorialis-p1, complete sequence	49910-49944	10	0.714
NC_019680_4	4.47\|2812891\|35\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	2812891-2812925	35	KY290955	Aeromonas phage 65.2, complete genome	159241-159275	10	0.714
NC_019680_4	4.47\|2812891\|35\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	2812891-2812925	35	NC_015251	Aeromonas phage 65, complete genome	159270-159304	10	0.714
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	JF734911	Helicobacter phage phiHP33, complete genome	15406-15439	11	0.676
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	KX119197	Helicobacter phage PtB92G, complete genome	17582-17615	11	0.676
NC_019680_2	2.8\|1147904\|34\|NC_019680\|PILER-CR,CRISPRCasFinder,CRT	1147904-1147937	34	KX119189	Helicobacter phage Pt21299RU, complete genome	13834-13867	11	0.676

1. spacer 4.27|2811456|36|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 8, identity: 0.778

tagattttaaaatttctaaaaatgtttcattgtctc	CRISPR spacer
tttcttttaaaaaatctaaaaatgtttcattattac	Protospacer
*   ********  *****************.*. *

2. spacer 4.69|2814486|35|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KT997869 (Uncultured Mediterranean phage uvDeep-CGR2-AD3-C76, complete genome) position: , mismatch: 8, identity: 0.771

ttgacctggactactttccctgtacccttctgtac---	CRISPR spacer
ttgacctggacacctttccctgtacc---tggaacagg	Protospacer
***********  *************   . * **

3. spacer 1.17|1106262|36|NC_019680|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041714 (Legionella geestiana strain HL-0438-4026 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

tagtaacccaaattaaagagctaataaaagaatctt	CRISPR spacer
tcggttcagaaattaaatagctaataaaagaagcta	Protospacer
* *   *  ******** ************** **

4. spacer 4.27|2811456|36|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 9, identity: 0.75

tagattttaaaatttctaaaaatgtt----tcattgtctc	CRISPR spacer
tagattttaaaattattaaaaatgttgttcatatgg----	Protospacer
************** .**********     .** *

5. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KX119206 (Helicobacter phage UKEN32U, complete genome) position: , mismatch: 10, identity: 0.706

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctatcgt	Protospacer
.*    .************* ***.*******

6. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KX119177 (Helicobacter phage SwA626G, complete genome) position: , mismatch: 10, identity: 0.706

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctatcgt	Protospacer
.*    .************* ***.*******

7. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KX119174 (Helicobacter phage UKEN31U, complete genome) position: , mismatch: 10, identity: 0.706

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctatcgt	Protospacer
.*    .************* ***.*******

8. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KX119205 (Helicobacter phage DeM53M, complete genome) position: , mismatch: 10, identity: 0.706

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctatcgt	Protospacer
.*    .************* ***.*******

9. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to MK448704 (Streptococcus phage Javan213, complete genome) position: , mismatch: 10, identity: 0.706

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
catttattaattctcctttaacttcttcttccga	Protospacer
  *. **** ****** ************ .* .

10. spacer 4.46|2812820|35|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015884 (Enterococcus faecalis strain sorialis plasmid Efsorialis-p1, complete sequence) position: , mismatch: 10, identity: 0.714

taaatactaggctatccttattttttgtgtgttca	CRISPR spacer
aaaaaacaaggctatccttattttttcatagtctc	Protospacer
 *** ** ******************    **..

11. spacer 4.47|2812891|35|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 10, identity: 0.714

agacgatcagcaaccagaacaaccccctattttga	CRISPR spacer
taaccatcagcaaccagaacaacaccctcaagagg	Protospacer
 .** ****************** ****     *.

12. spacer 4.47|2812891|35|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 10, identity: 0.714

agacgatcagcaaccagaacaaccccctattttga	CRISPR spacer
taaccatcagcaaccagaacaacaccctcaagagg	Protospacer
 .** ****************** ****     *.

13. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to JF734911 (Helicobacter phage phiHP33, complete genome) position: , mismatch: 11, identity: 0.676

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctattgt	Protospacer
.*    .************* ***.******.

14. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KX119197 (Helicobacter phage PtB92G, complete genome) position: , mismatch: 11, identity: 0.676

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctatgct	Protospacer
.*    .************* ***.****** .

15. spacer 2.8|1147904|34|NC_019680|PILER-CR,CRISPRCasFinder,CRT matches to KX119189 (Helicobacter phage Pt21299RU, complete genome) position: , mismatch: 11, identity: 0.676

gttcgattatttctccgttaacttcttctatctg	CRISPR spacer
ataattctatttctccgttatctttttctatgct	Protospacer
.*    .************* ***.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1119834 : 1129118

Pseudomonas_phage(33.33%)

head,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015123885.1\|1119834_1120842_+	glycoside hydrolase family 104 protein	H9C1A7	Pectobacterium_phage	3.7e-21	43.6
WP_041430639.1\|1120853_1121138_+	DUF2829 domain-containing protein	A0A0K2CNK6	Brevibacillus_phage	1.3e-27	60.0
WP_015123886.1\|1121134_1121494_+	hypothetical protein	NA	NA	NA	NA
WP_015123887.1\|1121486_1121801_+	hypothetical protein	NA	NA	NA	NA
WP_015123888.1\|1121810_1122332_+	hypothetical protein	NA	NA	NA	NA
WP_156804941.1\|1122396_1123665_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	2.0e-128	57.8
WP_015123890.1\|1123664_1126367_+	DUF935 family protein	A0A0S4L5M4	Pseudomonas_phage	3.1e-86	40.7
WP_041430641.1\|1126377_1126791_+	hypothetical protein	NA	NA	NA	NA
WP_041430642.1\|1126780_1127302_+	DUF935 family protein	NA	NA	NA	NA
WP_015123891.1\|1127294_1128437_+\|head	phage head morphogenesis protein, SPP1 gp7	J9STS2	Pseudomonas_phage	3.0e-51	47.1
WP_015123892.1\|1128405_1128672_+	hypothetical protein	NA	NA	NA	NA
WP_015123893.1\|1128671_1129118_+	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	2.1e-08	28.0

DBSCAN-SWA_2

1694462 : 1721797

Bacillus_phage(66.67%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015124410.1\|1694462_1694873_-\|transposase	IS200/IS605 family transposase	Q331Y4	Clostridium_botulinum_C_phage	4.4e-05	29.5
WP_051020985.1\|1695796_1696324_+\|transposase	transposase	NA	NA	NA	NA
WP_041430744.1\|1696517_1706705_-	FG-GAP repeat protein	NA	NA	NA	NA
WP_041430745.1\|1707200_1708697_-	hypothetical protein	NA	NA	NA	NA
WP_015124411.1\|1708885_1711708_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	3.3e-30	26.4
WP_015124412.1\|1711754_1713227_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_015124413.1\|1713229_1715443_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	5.9e-35	26.3
WP_015124414.1\|1715661_1716507_+	hypothetical protein	NA	NA	NA	NA
WP_015124415.1\|1716559_1716808_+	hypothetical protein	NA	NA	NA	NA
WP_015124416.1\|1716869_1717823_+	hypothetical protein	NA	NA	NA	NA
WP_015124417.1\|1717929_1718763_+	hypothetical protein	NA	NA	NA	NA
WP_015124418.1\|1718886_1719864_+	hypothetical protein	NA	NA	NA	NA
WP_015124419.1\|1719950_1720400_+	hypothetical protein	NA	NA	NA	NA
WP_015124420.1\|1720452_1720686_+	hypothetical protein	NA	NA	NA	NA
WP_015124421.1\|1720885_1721797_+\|transposase	transposase family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019680

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection