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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_019703 Geitlerinema sp. PCC 7407, complete sequence 5 crisprs DinG,c2c9_V-U4,csa3,cas14j,Cas14u_CAS-V,csb2gr5,cas7,cas8u1,cas3,DEDDh,RT,c2c5_V-U5 0 5 2 0

Results visualization

1. NC_019703
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019703_1 1919477-1919553 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019703_2 2173675-2173766 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019703_3 2281100-2282806 Unclear NA
23 spacers
csb2gr5,cas7,cas8u1,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019703_4 3405789-3405981 TypeV-U5 V-U5
2 spacers
c2c5_V-U5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019703_5 4668656-4668752 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_019703_3 3.16|2282224|34|NC_019703|CRISPRCasFinder 2282224-2282257 34 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 345901-345934 8 0.765
NC_019703_3 3.19|2282439|34|NC_019703|CRISPRCasFinder 2282439-2282472 34 NZ_CP039697 Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence 313271-313304 8 0.765
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_CP015280 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence 36321-36355 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_CP023153 Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence 23958-23992 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_CP019224 Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence 67483-67517 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_LT703507 Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3 71782-71816 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_CP015273 Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence 64007-64041 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_CP029333 Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence 112757-112791 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NZ_CP045964 Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence 55250-55284 9 0.743
NC_019703_3 3.7|2281573|35|NC_019703|CRISPRCasFinder 2281573-2281607 35 NC_022654 Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence 55790-55824 9 0.743
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_CP015280 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence 36321-36356 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_CP023153 Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence 23958-23993 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_CP019224 Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence 67483-67518 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_LT703507 Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3 71781-71816 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_CP015273 Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence 64006-64041 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_CP029333 Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence 112756-112791 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NZ_CP045964 Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence 55249-55284 9 0.75
NC_019703_3 3.52|2281573|36|NC_019703|PILER-CR 2281573-2281608 36 NC_022654 Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence 55789-55824 9 0.75
NC_019703_3 3.61|2282224|35|NC_019703|PILER-CR 2282224-2282258 35 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 345900-345934 9 0.743

1. spacer 3.16|2282224|34|NC_019703|CRISPRCasFinder matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

aagccgtcgggcggcctgagccgtcgtcctcgaa	CRISPR spacer
cggcctgggggcggcctgcgccgtcgtccgcgag	Protospacer
 .***   ********** ********** ***.

2. spacer 3.19|2282439|34|NC_019703|CRISPRCasFinder matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 8, identity: 0.765

gtggtcgaaatcggctccctgcgccgtctccagg	CRISPR spacer
gcggtcgatatcggcaccctgcgccgcatcatcg	Protospacer
*.****** ****** **********. **   *

3. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

4. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_CP023153 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

5. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_CP019224 (Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

6. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_LT703507 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

7. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_CP015273 (Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

8. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

9. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NZ_CP045964 (Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

10. spacer 3.7|2281573|35|NC_019703|CRISPRCasFinder matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 9, identity: 0.743

ggttggggctccgcagctgcggcttcgggtgccac	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccac	Protospacer
*    **   ******* .****************

11. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

12. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_CP023153 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

13. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_CP019224 (Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

14. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_LT703507 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

15. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_CP015273 (Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

16. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

17. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NZ_CP045964 (Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

18. spacer 3.52|2281573|36|NC_019703|PILER-CR matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 9, identity: 0.75

ggttggggctccgcagctgcggcttcgggtgccacg	CRISPR spacer
gcgacggcggccgcagcgacggcttcgggtgccacg	Protospacer
*    **   ******* .*****************

19. spacer 3.61|2282224|35|NC_019703|PILER-CR matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aagccgtcgggcggcctgagccgtcgtcctcgaat	CRISPR spacer
cggcctgggggcggcctgcgccgtcgtccgcgagg	Protospacer
 .***   ********** ********** ***. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1026083 : 1033198 7 Agrobacterium_phage(33.33%) protease,tRNA NA
DBSCAN-SWA_2 3456860 : 3496968 33 Mycobacterium_phage(12.5%) protease,transposase,integrase attL 3455567:3455583|attR 3485843:3485859
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage