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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_019701 Pseudanabaena sp. PCC 7367, complete genome 8 crisprs cas6,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,csa3,cas4,DEDDh,cas3,cas5,cas8c,cas7,cas1,cas2,WYL 0 7 3 0
NC_019690 Pseudanabaena sp. PCC 7367 plasmid pPSE7367.01, complete sequence 0 crisprs RT,PD-DExK,cas3 0 0 1 0

Results visualization

1. NC_019701
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_1 841798-842500 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_2 2206597-2212374 TypeI I-C
79 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_3 2213433-2214421 TypeI I-C
13 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_4 3090389-3091347 Orphan NA
12 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_5 3106132-3107207 Orphan NA
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_6 3411179-3412685 Orphan N:A
20 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_7 3694549-3695104 Orphan N:A
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019701_8 3888351-3888836 Orphan N:A
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_019701_2 2.14|2207577|33|NC_019701|PILER-CR,CRISPRCasFinder,CRT 2207577-2207609 33 MN694106 Marine virus AFVG_250M510, complete genome 9123-9155 5 0.848
NC_019701_2 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT 2207435-2207468 34 NC_017791 Deinococcus gobiensis I-0 plasmid P2, complete sequence 72708-72741 8 0.765
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NC_021727 Acinetobacter baumannii BJAB07104 plasmid p1BJAB07104, complete sequence 47674-47708 9 0.743
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NZ_CP018422 Acinetobacter baumannii strain XDR-BJ83 isolate male patient plasmid pBJ83, complete sequence 6528-6562 9 0.743
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NZ_CP018144 Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence 1897-1931 9 0.743
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NC_017848 Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence 39702-39736 9 0.743
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NZ_KM922672 Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence 47674-47708 9 0.743
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NC_021731 Acinetobacter baumannii BJAB0868 plasmid p2BJAB0868, complete sequence 47674-47708 9 0.743
NC_019701_1 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 842355-842389 35 NZ_MK386682 Acinetobacter baumannii strain ABAY10001 plasmid pABAY10001_1C, complete sequence 17034-17068 9 0.743
NC_019701_2 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT 2207435-2207468 34 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 252773-252806 9 0.735
NC_019701_2 2.17|2207802|33|NC_019701|CRISPRCasFinder,CRT 2207802-2207834 33 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 206742-206774 9 0.727
NC_019701_2 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT 2207435-2207468 34 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 705732-705765 10 0.706
NC_019701_2 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT 2207435-2207468 34 NC_017078 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence 20387-20420 10 0.706
NC_019701_6 6.13|3412095|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT 3412095-3412129 35 LN878149 Cronobacter phage Dev-CD-23823 complete sequence 24432-24466 10 0.714
NC_019701_2 2.22|2208154|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR 2208154-2208190 37 MT074467 Salmonella phage falkor, complete genome 11652-11688 11 0.703
NC_019701_2 2.22|2208154|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR 2208154-2208190 37 MN197465 Salmonella phage 2-3, complete genome 97791-97827 11 0.703
NC_019701_2 2.66|2211352|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR 2211352-2211388 37 MT074467 Salmonella phage falkor, complete genome 11652-11688 11 0.703
NC_019701_2 2.66|2211352|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR 2211352-2211388 37 MN197465 Salmonella phage 2-3, complete genome 97791-97827 11 0.703

1. spacer 2.14|2207577|33|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to MN694106 (Marine virus AFVG_250M510, complete genome) position: , mismatch: 5, identity: 0.848

-tctgtacagttcgtgggcgatgttacctatgtt	CRISPR spacer
ctctaccca-ttcgtgggtgatgttacctatgtt	Protospacer
 ***.. ** ********.***************

2. spacer 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NC_017791 (Deinococcus gobiensis I-0 plasmid P2, complete sequence) position: , mismatch: 8, identity: 0.765

aatcacccagaggaggcgatcgccagcttcgggc--	CRISPR spacer
aatctcccagaggaggcgctcgcc--ctcacggtcg	Protospacer
**** ************* *****  **.  **.  

3. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NC_021727 (Acinetobacter baumannii BJAB07104 plasmid p1BJAB07104, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

4. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018422 (Acinetobacter baumannii strain XDR-BJ83 isolate male patient plasmid pBJ83, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

5. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018144 (Acinetobacter baumannii strain HRAB-85 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

6. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NC_017848 (Acinetobacter baumannii MDR-TJ plasmid pABTJ1, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

7. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM922672 (Acinetobacter baumannii strain A221 plasmid pAZJ221, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

8. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NC_021731 (Acinetobacter baumannii BJAB0868 plasmid p2BJAB0868, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

9. spacer 1.8|842355|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK386682 (Acinetobacter baumannii strain ABAY10001 plasmid pABAY10001_1C, complete sequence) position: , mismatch: 9, identity: 0.743

tatttaaatcagtatatttatctaagtaaatcaac	CRISPR spacer
cagacagatctgtatatttctctaagtaaatcatt	Protospacer
.*  .*.*** ******** ************* .

10. spacer 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

aatcacccagaggaggcgatcgccagcttcgggc	CRISPR spacer
ctgcggacggaggaggcgatcgccagctaccggc	Protospacer
   *.  *.******************* * ***

11. spacer 2.17|2207802|33|NC_019701|CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.727

gataatagagaaatccaaaaatt-----acctattggc	CRISPR spacer
gataatagtgaaatcctaaaattagtaaaacca-----	Protospacer
******** ******* ******     * *.*     

12. spacer 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

aatcacccagaggaggcgatcgccagcttcgggc	CRISPR spacer
gccaccccggaggaggcgatcgcccgcttcgccg	Protospacer
. .  ***.*************** ******   

13. spacer 2.12|2207435|34|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to NC_017078 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence) position: , mismatch: 10, identity: 0.706

aatcacccagaggaggcgatcgccagcttcgggc	CRISPR spacer
gaaaaattcaaggaggccatcgccagctacgggc	Protospacer
.*  * .. .******* ********** *****

14. spacer 6.13|3412095|35|NC_019701|PILER-CR,CRISPRCasFinder,CRT matches to LN878149 (Cronobacter phage Dev-CD-23823 complete sequence) position: , mismatch: 10, identity: 0.714

tttgccaccgccagattggagccaaacagcttaat	CRISPR spacer
agcacgcccgccagattgcagccaaccagcttgag	Protospacer
  ..*  *********** ****** ******.* 

15. spacer 2.22|2208154|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR matches to MT074467 (Salmonella phage falkor, complete genome) position: , mismatch: 11, identity: 0.703

aactttcatacccttcacctcatttactacacgccgt	CRISPR spacer
aactttcatacacttcacctcttttattctttttcac	Protospacer
*********** ********* ****.* . . .*..

16. spacer 2.22|2208154|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR matches to MN197465 (Salmonella phage 2-3, complete genome) position: , mismatch: 11, identity: 0.703

aactttcatacccttcacctcatttactacacgccgt	CRISPR spacer
aactttcatacacttcacctcttttattctttcttct	Protospacer
*********** ********* ****.* . . .. *

17. spacer 2.66|2211352|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR matches to MT074467 (Salmonella phage falkor, complete genome) position: , mismatch: 11, identity: 0.703

aactttcatacccttcacctcatttactacacgccgt	CRISPR spacer
aactttcatacacttcacctcttttattctttttcac	Protospacer
*********** ********* ****.* . . .*..

18. spacer 2.66|2211352|37|NC_019701|CRISPRCasFinder,CRT,PILER-CR matches to MN197465 (Salmonella phage 2-3, complete genome) position: , mismatch: 11, identity: 0.703

aactttcatacccttcacctcatttactacacgccgt	CRISPR spacer
aactttcatacacttcacctcttttattctttcttct	Protospacer
*********** ********* ****.* . . .. *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1480082 : 1490865 8 Bacillus_phage(42.86%) NA NA
DBSCAN-SWA_2 1981015 : 1987252 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_3 2566474 : 2621490 42 uncultured_virus(20.0%) tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_019690
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15850 : 82759 49 Enterobacteria_phage(27.78%) integrase,transposase attL 38675:38734|attR 59862:62441
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage