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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_019752 Calothrix sp. PCC 6303 plasmid pCAL6303.03, complete sequence 0 crisprs NA 0 0 0 0
NC_019728 Calothrix sp. PCC 6303 plasmid pCAL6303.02, complete sequence 1 crisprs NA 0 1 0 0
NC_019751 Calothrix sp. PCC 6303, complete sequence 22 crisprs cas1,cas2,WYL,cas10,cmr4gr7,cmr5gr11,csx1,Cas14c_CAS-V-F,2OG_CAS,cas14j,DinG,cas3,csa3,c2c9_V-U4,PD-DExK,c2c5_V-U5,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas14k,RT 5 10 4 0
NC_019727 Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence 2 crisprs NA 2 2 0 0

Results visualization

1. NC_019727
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019727_1 791-907 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019727_2 21270-21396 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019727.1 4495-4525 0 1.0
NC_019727_1 1.2|868|17|NC_019727|CRISPRCasFinder 868-884 17 NC_019727.1 4455-4471 1 0.941

1. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to position: 4495-4525, mismatch: 0, identity: 1.0

ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
ataattgcgcttcaaccaggattaattgcaa	Protospacer
*******************************

2. spacer 1.2|868|17|NC_019727|CRISPRCasFinder matches to position: 4455-4471, mismatch: 1, identity: 0.941

aacctgcaatcatcggt	CRISPR spacer
aacctgcaatcatctgt	Protospacer
************** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019727 Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence 814-844 0 1.0
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019727 Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence 4495-4525 0 1.0
NC_019727_2 2.1|21304|59|NC_019727|CRISPRCasFinder 21304-21362 59 NC_019727 Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence 21304-21362 0 1.0
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019773 Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence 76281-76311 4 0.871
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019773 Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence 112477-112507 4 0.871
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019774 Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence 80646-80676 4 0.871
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NZ_CP046708 Nostoc sp. ATCC 53789 plasmid pNsp_e, complete sequence 26464-26494 5 0.839
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019773 Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence 72780-72810 5 0.839
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019773 Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence 108976-109006 5 0.839
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_019774 Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence 84147-84177 5 0.839
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NC_003273 Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120delta, complete sequence 45261-45291 5 0.839
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 NZ_CP016500 Agrobacterium sp. RAC06 plasmid pBSY240_1, complete sequence 233415-233445 6 0.806
NC_019727_1 1.1|814|31|NC_019727|CRISPRCasFinder 814-844 31 AP018324 Nostoc sp. HK-01 plasmid plasmid6 DNA, complete genome 2483-2513 7 0.774

1. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019727 (Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence) position: , mismatch: 0, identity: 1.0

ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
ataattgcgcttcaaccaggattaattgcaa	Protospacer
*******************************

2. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019727 (Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence) position: , mismatch: 0, identity: 1.0

ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
ataattgcgcttcaaccaggattaattgcaa	Protospacer
*******************************

3. spacer 2.1|21304|59|NC_019727|CRISPRCasFinder matches to NC_019727 (Calothrix sp. PCC 6303 plasmid pCAL6303.01, complete sequence) position: , mismatch: 0, identity: 1.0

gctcaaatagccaccagttttttaataacgaattaagtgctgaccagggaaatagccag	CRISPR spacer
gctcaaatagccaccagttttttaataacgaattaagtgctgaccagggaaatagccag	Protospacer
***********************************************************

4. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019773 (Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence) position: , mismatch: 4, identity: 0.871

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcaaccaggattaattgcaa	Protospacer
 ** **. **.*********************

5. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019773 (Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence) position: , mismatch: 4, identity: 0.871

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcaaccaggattaattgcaa	Protospacer
 ** **. **.*********************

6. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019774 (Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence) position: , mismatch: 4, identity: 0.871

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcaaccaggattaattgcaa	Protospacer
 ** **. **.*********************

7. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NZ_CP046708 (Nostoc sp. ATCC 53789 plasmid pNsp_e, complete sequence) position: , mismatch: 5, identity: 0.839

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcgaccaggattaattgcaa	Protospacer
 ** **. **.***.*****************

8. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019773 (Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence) position: , mismatch: 5, identity: 0.839

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcaaccaggattatttgcaa	Protospacer
 ** **. **.************** ******

9. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019773 (Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence) position: , mismatch: 5, identity: 0.839

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcaaccaggattatttgcaa	Protospacer
 ** **. **.************** ******

10. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_019774 (Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence) position: , mismatch: 5, identity: 0.839

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcaaccaggattatttgcaa	Protospacer
 ** **. **.************** ******

11. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NC_003273 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120delta, complete sequence) position: , mismatch: 5, identity: 0.839

-ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
aatcatc-cgtttcgaccaggattaattgcaa	Protospacer
 ** **. **.***.*****************

12. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to NZ_CP016500 (Agrobacterium sp. RAC06 plasmid pBSY240_1, complete sequence) position: , mismatch: 6, identity: 0.806

ataattgcgcttcaaccaggattaat-tgcaa	CRISPR spacer
agaattgcgcttcaagcaggatgaacatgcg-	Protospacer
* ************* ****** **. ***. 

13. spacer 1.1|814|31|NC_019727|CRISPRCasFinder matches to AP018324 (Nostoc sp. HK-01 plasmid plasmid6 DNA, complete genome) position: , mismatch: 7, identity: 0.774

ataattgcgcttcaaccaggattaattgcaa	CRISPR spacer
ataattacgcttcagccaggattaagggtct	Protospacer
******.*******.**********  *.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_019751
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_1 316560-317384 TypeIII NA
11 spacers
cas1,cas2,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_2 324319-325428 TypeIII NA
15 spacers
cas2,cas1,WYL,cas10,cmr4gr7,cmr5gr11,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_3 328043-328873 TypeIII NA
11 spacers
WYL,cas2,cas1,cas10,cmr4gr7,cmr5gr11,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_4 1085419-1085526 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_5 1591761-1591849 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_6 1621155-1621703 TypeV-U5 V-U5
7 spacers
c2c5_V-U5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_7 2021864-2022765 TypeI-D I-D,II-B
12 spacers
cas3,PD-DExK,cas10d,csc2gr7,csc1gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_8 2026580-2026681 TypeI-D I-D,II-B
1 spacers
cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,cas6,cas4,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_9 2038085-2039287 TypeI-D I-D,II-B
16 spacers
cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,PD-DExK

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_10 2237603-2237729 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_11 2712338-2712432 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_12 2712512-2712723 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_13 2924934-2925044 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_14 3151872-3151960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_15 3493010-3493138 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_16 3544526-3544629 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_17 3976837-3976932 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_18 4624382-4624475 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_19 4750254-4750354 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_20 4840951-4841096 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_21 5480533-5480634 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019751_22 6352584-6352690 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_019751_1 1.1|316595|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 316595-316630 36 NC_019751.1 193339-193374 0 1.0
NC_019751_2 2.1|324354|39|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324354-324392 39 NC_019751.1 6107853-6107891 0 1.0
NC_019751_2 2.2|324428|35|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324428-324462 35 NC_019751.1 4731866-4731900 0 1.0
NC_019751_7 7.12|2022697|32|NC_019751|CRISPRCasFinder,CRT 2022697-2022728 32 NC_019751.1 6375759-6375790 2 0.938
NC_019751_12 12.2|2712653|28|NC_019751|PILER-CR 2712653-2712680 28 NC_019751.1 2470424-2470451 1 0.964

1. spacer 1.1|316595|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to position: 193339-193374, mismatch: 0, identity: 1.0

gaaactgcttctgctgattgagttaaaaaggatttt	CRISPR spacer
gaaactgcttctgctgattgagttaaaaaggatttt	Protospacer
************************************

2. spacer 2.1|324354|39|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to position: 6107853-6107891, mismatch: 0, identity: 1.0

taggaagttttcgcttgggtattgcttaatttagcagag	CRISPR spacer
taggaagttttcgcttgggtattgcttaatttagcagag	Protospacer
***************************************

3. spacer 2.2|324428|35|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to position: 4731866-4731900, mismatch: 0, identity: 1.0

tatttaaggctatatcgcttctaaattgagagaca	CRISPR spacer
tatttaaggctatatcgcttctaaattgagagaca	Protospacer
***********************************

4. spacer 7.12|2022697|32|NC_019751|CRISPRCasFinder,CRT matches to position: 6375759-6375790, mismatch: 2, identity: 0.938

ccagcacgagtgcgatcgccgattgcgatcgc	CRISPR spacer
ccaggacgaatgcgatcgccgattgcgatcgc	Protospacer
**** ****.**********************

5. spacer 12.2|2712653|28|NC_019751|PILER-CR matches to position: 2470424-2470451, mismatch: 1, identity: 0.964

acgactttcgtcgcgcaagcttcgcatc	CRISPR spacer
acgacttgcgtcgcgcaagcttcgcatc	Protospacer
******* ********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_019751_12 12.2|2712653|28|NC_019751|PILER-CR 2712653-2712680 28 AP018277 Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome 69511-69538 3 0.893
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 336395-336430 4 0.889
NC_019751_12 12.2|2712653|28|NC_019751|PILER-CR 2712653-2712680 28 NC_019728 Calothrix sp. PCC 6303 plasmid pCAL6303.02, complete sequence 48794-48821 4 0.857
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 336401-336436 6 0.833
NC_019751_13 13.1|2924973|33|NC_019751|CRISPRCasFinder 2924973-2925005 33 NZ_CP014853 Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence 104222-104254 6 0.818
NC_019751_1 1.9|317168|38|NC_019751|PILER-CR,CRISPRCasFinder,CRT 317168-317205 38 MN694186 Marine virus AFVG_250M615, complete genome 50697-50734 7 0.816
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 509802-509837 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 MH509446 Gordonia phage DelRio, complete genome 6233-6268 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 MN539018 Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence 121304-121339 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP044306 Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence 130749-130784 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP027411 Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence 73177-73212 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP028537 Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence 45648-45683 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_AP023191 Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence 47039-47074 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 MN539017 Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence 71641-71676 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 MT077888 Escherichia coli plasmid p65, complete sequence 47133-47168 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NC_009838 Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence 46537-46572 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP039170 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence 69624-69659 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 CP048299 Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence 195981-196016 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 CP048303 Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence 41269-41304 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP037959 Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence 45080-45115 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP039861 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence 239714-239749 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP048776 Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence 45080-45115 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NC_019114 Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence 43330-43365 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_AP023198 Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence 47039-47074 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP043223 Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence 5930-5965 7 0.806
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP043223 Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence 240151-240186 7 0.806
NC_019751_12 12.2|2712653|28|NC_019751|PILER-CR 2712653-2712680 28 NZ_CP030828 Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence 631683-631710 7 0.75
NC_019751_1 1.11|317313|37|NC_019751|PILER-CR,CRISPRCasFinder,CRT 317313-317349 37 NZ_CP044488 Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-5, complete sequence 1616-1652 8 0.784
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 325884-325919 8 0.778
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 MH509446 Gordonia phage DelRio, complete genome 6227-6262 8 0.778
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 MT758688 Mycobacterium phage CELFI, complete genome 74676-74711 8 0.778
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 619935-619970 8 0.778
NC_019751_2 2.10|325005|35|NC_019751|PILER-CR,CRISPRCasFinder,CRT 325005-325039 35 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 170929-170963 8 0.771
NC_019751_7 7.10|2022554|34|NC_019751|PILER-CR,CRISPRCasFinder,CRT 2022554-2022587 34 CP011076 Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence 1012108-1012141 8 0.765
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 509808-509843 9 0.75
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NC_019201 Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence 240-275 9 0.75
NC_019751_2 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 324719-324754 36 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 509814-509849 10 0.722
NC_019751_9 9.11|2038850|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT 2038850-2038885 36 MN013189 Microcystis phage Mic1, complete genome 65035-65070 10 0.722
NC_019751_2 2.12|325146|35|NC_019751|PILER-CR,CRISPRCasFinder,CRT 325146-325180 35 MN693352 Marine virus AFVG_25M558, complete genome 46200-46234 11 0.686
NC_019751_7 7.12|2022697|32|NC_019751|CRISPRCasFinder,CRT 2022697-2022728 32 NZ_CP007257 Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence 69014-69045 11 0.656

1. spacer 12.2|2712653|28|NC_019751|PILER-CR matches to AP018277 (Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome) position: , mismatch: 3, identity: 0.893

acgactttcgtcgcgcaagcttcgcatc	CRISPR spacer
acgactttcgtcgcgcaagcttcgcggt	Protospacer
*************************. .

2. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 4, identity: 0.889

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
tgtctcggtctcggtctcggtctcggtctcggtctc	Protospacer
 **.* .*****************************

3. spacer 12.2|2712653|28|NC_019751|PILER-CR matches to NC_019728 (Calothrix sp. PCC 6303 plasmid pCAL6303.02, complete sequence) position: , mismatch: 4, identity: 0.857

acgactttcgtcgcgcaagcttcgcatc	CRISPR spacer
acgactgtcgtcgcgcaagcttcgcggt	Protospacer
****** ******************. .

4. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.833

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
gggcactgtctcggtctcggtctcggtctcggtctc	Protospacer
.* .   *****************************

5. spacer 13.1|2924973|33|NC_019751|CRISPRCasFinder matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 6, identity: 0.818

-agattttaagataaacagtatattctctctcta	CRISPR spacer
cacataat-agagaaacagtatattctctttcta	Protospacer
 * **  * *** ****************.****

6. spacer 1.9|317168|38|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MN694186 (Marine virus AFVG_250M615, complete genome) position: , mismatch: 7, identity: 0.816

agtagcacaatcccattcagtaattgca-catacttttc	CRISPR spacer
actagcacaatcccattccgtaattccaccatattgct-	Protospacer
* **************** ****** ** ****.* .* 

7. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcg---gtctcggtctc	CRISPR spacer
ggtctgggtctcggtctcggtctcggttgtctgggt---	Protospacer
.**.**.******************   **** ***   

8. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
cgactccgtctcggtttcggtctcggtcgcggtctc	Protospacer
 * .*  ********.************ *******

9. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

10. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

11. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

12. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

13. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

14. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

15. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

16. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

17. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

18. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

19. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

20. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

21. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

22. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

23. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

24. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

25. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

26. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 7, identity: 0.806

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
atcttctgattcggtatcggtctcggtctcggtctc	Protospacer
* .**  * .***** ********************

27. spacer 12.2|2712653|28|NC_019751|PILER-CR matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 7, identity: 0.75

acgactttcgtcgcgcaagcttcgcatc	CRISPR spacer
tgaacttgcgtcgcgcaagcttcgatta	Protospacer
  .**** ****************  * 

28. spacer 1.11|317313|37|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044488 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-5, complete sequence) position: , mismatch: 8, identity: 0.784

acatttaacaaattattttgtcaaatctgaa---aaatca	CRISPR spacer
agctttaacaaattattttgttaaagctgtactcaaa---	Protospacer
*  ******************.*** *** *   ***   

29. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 8, identity: 0.778

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
ctcttccatcgcggtctcggtctcggtctcggtctt	Protospacer
  .**  .** ************************.

30. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 8, identity: 0.778

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
cgtctcggtttcggtctcggtcgcggtctcggtgcc	Protospacer
 **.* .**.************ ********** .*

31. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 8, identity: 0.778

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
ggtacccgtctcggtcccggtcccggtctcggtccc	Protospacer
.** .  *********.*****.***********.*

32. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.778

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
ggtaccggcctcggtctcggcctcggcctcggtctc	Protospacer
.** . .*.***********.*****.*********

33. spacer 2.10|325005|35|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.771

gaatgaaaagatttttacatcttttgctgataaaa	CRISPR spacer
agatgaaaagaattttaaatcttttgcataaaaca	Protospacer
..********* ***** *********  * ** *

34. spacer 7.10|2022554|34|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgataatagtattctgaatactctg-gtgtaatt	CRISPR spacer
ctgataatagtattcggaatattctgcttgttgc-	Protospacer
.************** *****.****  *** .. 

35. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 9, identity: 0.75

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
caactgggtctgggtctcggtctcggtctcggttgt	Protospacer
 . .**.**** *********************. .

36. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 9, identity: 0.75

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
tccctggtgctcggtctcagtctcggtctcagtctc	Protospacer
  ..**.  *********.***********.*****

37. spacer 2.6|324719|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 10, identity: 0.722

agtttgagtctcggtctcggtctcggtctcggtctc	CRISPR spacer
gaacggcaactgggtctgggtctcggtctcggtctc	Protospacer
.. . * . ** ***** ******************

38. spacer 9.11|2038850|36|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MN013189 (Microcystis phage Mic1, complete genome) position: , mismatch: 10, identity: 0.722

----caagctttgtacaacttcaagaaaaatcaaatagtt	CRISPR spacer
gtgctagg----gtacaaattcaagaaaaatcaaagagcc	Protospacer
    .*.*    ****** **************** **..

39. spacer 2.12|325146|35|NC_019751|PILER-CR,CRISPRCasFinder,CRT matches to MN693352 (Marine virus AFVG_25M558, complete genome) position: , mismatch: 11, identity: 0.686

ctttgatgtaagaaaactcatcactagcaaaaaaa	CRISPR spacer
agaaagaataagaaaactctttactagcaaaaaga	Protospacer
    .. .*********** *.***********.*

40. spacer 7.12|2022697|32|NC_019751|CRISPRCasFinder,CRT matches to NZ_CP007257 (Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence) position: , mismatch: 11, identity: 0.656

ccagcacgagtgcgatcgccgattgcgatcgc	CRISPR spacer
gggaaacgagcgcaatcgccgattgcgaagat	Protospacer
  .. *****.**.**************  ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 249445 : 282790 28 uncultured_Caudovirales_phage(20.0%) transposase,integrase,protease attL 248527:248543|attR 296427:296443
DBSCAN-SWA_2 291354 : 360224 50 Lysinibacillus_phage(20.0%) transposase,tRNA,protease NA
DBSCAN-SWA_3 2803324 : 2918529 96 Liberibacter_phage(16.67%) transposase,tail,protease,plate NA
DBSCAN-SWA_4 3927849 : 3988730 44 Bacillus_virus(16.67%) transposase,holin,tRNA,protease,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_019728
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_019728_1 12168-12275 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_019728_1 1.1|12192|60|NC_019728|CRISPRCasFinder 12192-12251 60 NC_019728 Calothrix sp. PCC 6303 plasmid pCAL6303.02, complete sequence 12192-12251 0 1.0

1. spacer 1.1|12192|60|NC_019728|CRISPRCasFinder matches to NC_019728 (Calothrix sp. PCC 6303 plasmid pCAL6303.02, complete sequence) position: , mismatch: 0, identity: 1.0

gcttttgctgatcttgcaatttttttagctcattttcatctacagaatttttattcttta	CRISPR spacer
gcttttgctgatcttgcaatttttttagctcattttcatctacagaatttttattcttta	Protospacer
************************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage