CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	2 crisprs	csa3,cas14j,Cas14u_CAS-V,PD-DExK,cas3	0	2	1	0
NC_019730	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence	0 crisprs	c2c9_V-U4,PD-DExK,cas3,RT,Cas9_archaeal,cas14k,cas14j	0	0	3	0
NC_019729	Oscillatoria nigro-viridis PCC 7112, complete sequence	67 crisprs	Cas14c_CAS-V-F,cas14k,RT,cas14j,PD-DExK,DEDDh,c2c9_V-U4,WYL,cas10,cmr4gr7,cmr5gr11,csx1,Cas9_archaeal,Cas14u_CAS-V,csm3gr7,csx19,csx10gr5,csa3,cas6,2OG_CAS,csx21,csm6,csm2gr11,DinG,cas3,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,csx3	12	34	9	1
NC_019732	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.05, complete sequence	0 crisprs	NA	0	0	0	0
NC_019764	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence	2 crisprs	NA	1	2	0	0
NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	2 crisprs	RT,c2c9_V-U4	1	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019763_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019763_1

40283-40397

TypeV

Consensus_repeat	Method
CGAACTTCAGCGCCAGATGAAAATCGCCAAGAAA	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NC_019763_1

>merge|NC_019763|1|40283-40397|CRISPRCasFinder
CGAACTTCAGCGCCAGATGAAAATCGCCAAGAAACTTGAGGAAACAGGTTTAAGCCGAGATGCAGCAGCGCGCTTTATCGCCGAACTTCAGCGCCAGATGAAAATCGCCAAGAAA

>NC_019763|1|1|40283-40397|CRISPRCasFinder
CGAACTTCAGCGCCAGATGAAAATCGCCAAGAAA	CTTGAGGAAACAGGTTTAAGCCGAGATGCAGCAGCGCGCTTTATCGC
CGAACTTCAGCGCCAGATGAAAATCGCCAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019763.1\|WP_015211637.1\|32176_33244_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_019763.1\|WP_015211639.1\|34578_35760_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211645.1\|46344_46779_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211634.1\|28076_29495_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|366360
NC_019763.1\|WP_015211635.1\|29498_29870_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211636.1\|30635_32177_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NC_019763.1\|WP_015211648.1\|49789_51301_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197231
NC_019763.1\|WP_015211649.1\|51297_54747_-\|protein-kinase	unknown	unknown	gnl\|CDD\|273041
NC_019763.1\|WP_150111721.1\|43971_44163_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_041623809.1\|44694_46113_-\|transposase	cas14j	-	gnl\|CDD\|223747
NC_019763.1\|WP_015211647.1\|48100_49687_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NC_019763.1\|WP_015211643.1\|40796_42614_+\|type-I-restriction-modification-system-subunit-M/S	unknown	unknown	gnl\|CDD\|280533
NC_019763.1\|WP_015211646.1\|47076_47778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368199
NC_019763.1\|WP_015211641.1\|38916_39615_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NC_019763.1\|WP_150111720.1\|39775_39985_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211650.1\|54874_56671_-\|bifunctional-3'-5'-exonuclease/DNA-polymerase	unknown	unknown	gnl\|CDD\|176476
NC_019763.1\|WP_015211640.1\|35740_38920_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NC_019763.1\|WP_041623807.1\|27699_28080_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373079
NC_019763.1\|WP_041623832.1\|56864_57449_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|128898
NC_019763.1\|WP_015211638.1\|33236_34577_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341198

Protein	Function_ID	Function_description	E-value
NC_019763.1\|WP_015211637.1\|32176_33244_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.68516e-05
NC_019763.1\|WP_041623809.1\|44694_46113_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.4062e-28
NC_019763.1\|WP_015211641.1\|38916_39615_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	2.1789e-63
NC_019763.1\|WP_015211648.1\|49789_51301_-\|hypothetical-protein	gnl\|CDD\|197231	cd09133, PLDc_unchar5, Putative catalytic domain of uncharacterized hypothetical proteins with one or two copies of the HKD motif. Putative catalytic domain of uncharacterized hypothetical proteins with similarity to phospholipase D (PLD, EC 3.1.4.4). PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain one or two copies of the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.	2.42083e-23
NC_019763.1\|WP_015211649.1\|51297_54747_-\|protein-kinase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	5.01836e-63
NC_019763.1\|WP_015211634.1\|28076_29495_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|366360	pfam00899, ThiF, ThiF family. This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.	1.17162e-42
NC_019763.1\|WP_015211647.1\|48100_49687_+\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	1.06643e-51
NC_019763.1\|WP_015211643.1\|40796_42614_+\|type-I-restriction-modification-system-subunit-M/S	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	1.73889e-21
NC_019763.1\|WP_015211646.1\|47076_47778_-\|hypothetical-protein	gnl\|CDD\|368199	pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.	3.70602e-10
NC_019763.1\|WP_015211636.1\|30635_32177_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	1.38462e-128
NC_019763.1\|WP_015211650.1\|54874_56671_-\|bifunctional-3'-5'-exonuclease/DNA-polymerase	gnl\|CDD\|176476	cd08639, DNA_pol_A_Aquificae_like, Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used for phylogenetic anaylsis of bacteria. Species of the phylum Aquificae grow in extreme thermophilic environments. The Aquificae are non-spore-forming, Gram-negative rods and strictly thermophilic. Phylum Aquificae Pol A is different from E. coli Pol I by three signature sequences consisting of a 2 amino acids (aa) insert, a 5-6 aa insert and a 6 aa deletion. These signature sequences may provide a molecular marker for the family Aquificaceae and related species.	3.60387e-142
NC_019763.1\|WP_015211640.1\|35740_38920_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.06716e-123
NC_019763.1\|WP_041623807.1\|27699_28080_+\|hypothetical-protein	gnl\|CDD\|373079	pfam14462, Prok-E2_E, Prokaryotic E2 family E. A member of the E2/UBC superfamily of proteins found in diverse bacteria. Analysis of the active site residues suggest that members of this family are inactive as they lack the characteristic catalytic residues of the E2 enzymes. They are usually fused to or in the neighborhood of a multi/poly ubiquitin domain protein. Other proteins of the ubiquitin modification pathway such as the E1 and JAB proteins are also found in its gene neighborhood along with a distinct predicted metal-binding protein.	8.06111e-57
NC_019763.1\|WP_041623832.1\|56864_57449_-\|SAM-dependent-methyltransferase	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	3.45414e-06
NC_019763.1\|WP_015211638.1\|33236_34577_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341198	cd17517, RMtype1_S_EcoKI_StySPI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR),similar to Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) TRD2-CR2, Salmonella enterica subsp. enterica serovar Potsdam S subunit (S.StySPI) TRD2-CR2, and other TRD-CR's. Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) recognizes 5'... AACNNNNNNGTGC ... 3' and Salmonella enterica subsp. enterica serovar Potsdam S subunit (S.StySPI) recognizes 5'... AACNNNNNNGTRC ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoKI-TRD1 and S.StySPI-TRD1 both recognize AAC/GTT, S.EcoKI-TRD2 recognizes GCAC/GTGC and S.StySPI-TRD2 recognizes GYAC/GTRC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2.It also includes TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases, such as Pseudomonas putida Jo 4-731 Type IIG restriction enzyme/N6-adenine DNA methyltransferase (RM.PpiI), and type I DNA methyltransferases such as Bacillus cereus BDRD-ST24 M subunit of Type I N6-adenine DNA methyltransferase (M.Bce24ORF51270P). RM.PpiI recognizes 5' ... GAACNNNNNCTC ... 3'.	8.46676e-51

>NC_019763.1|WP_150111720.1|39775_39985_-|hypothetical-protein
MTNNLGYAKVSAQVFQHCCSQSDAKLIFVWLHGRAQETQRAYRGDVAHFTAFISRQREWEILRQMAFRL
>NC_019763.1|WP_015211641.1|38916_39615_+|M48-family-metallopeptidase
MTTVTFGDLSFKLRPSAKRRTIGITVERDGQLILATPPEVPMETLEKVVNDKRLWIHSKLIEKESFNPPTPAKEYVSGESFYYLGRSYSLKLVDGVEGKPPLRLYQSRFELQREAQAQGREVFIRWYGDRLSSILDTQIAVLVDRLEVSPRSVQVRDLGYRWGSCGHKGDLYFHWRVAMLPRSMIEYLAIHEMVHLIEPHHNHAFWDRVEQILPDFEERKRWLAENGVNYDL
>NC_019763.1|WP_015211640.1|35740_38920_+|type-I-restriction-endonuclease-subunit-R
MFQQTPEYLYSEKPTIDQLISMGWQHIEGSWDNPQVTDRENFKQVLIGDRLKTAIKRINLDDNGNPWLDDTQVNAAVSQLEHLGAQRLMEANQAATKLLLKGTTVQGQDGKDQTVHFIDFEHPYRNEFLAINQYRVDPPWATGKGGFIVPDIVLLVNGIPLVVIECKSPNLDNPITEAIRDLLQYSNQRGSSQPEGAEKLFHYNQLMIAASRGRAAAGTIGANYEHYVEWKDTTPCPKAEIAAELGVTELNSRQMLIAGMLQPANLLDILRNFTLFKTSDRRTIKLAPRYQQYRAVHEAIRRLLHNPTHAQHGTDDQRGGIIWHTQGSGKSLTMVYLIRKIRTIPALRRFKIVVVTDRTDLEKQLSDTAALTGEPLQKAKNVKKLENYLKQPGAGLVFGMIQKFKGGEDSEEEEKIEPMPKNLNSSEYILVLIDEAHRSHASTLHTNLLTALPNCVRIGFTGTPIVQSAKKTTKQIFGDFIDQYNIRQSQEDKVTLPILYEGLEARGTVTQGDDLDKLFEIVFQDKTPEERAQIKAKYATKTQVCEARELIKAKAKDMLRHYCDRILPGGFKAQVVASTRLAAVRYQEAFLEAQRELVQQLETRAPILQTFDTETLENLEDAETRFLAQALPHLETIRSLEFAAVISADKDDDPNWKKWTDKSQQAINIANFKDPLAKNSLAILIVKSMLLTGFDAPLEQVLYLDRGMKEYELLQAIARVNRVYDDTKEYGLVVDYYGVNLAEALAIYEKVDTEAAWFDIREELPSLRDKHDKLIKLFSKSGCTIDDLDDCVDLLRDEILRVEFNNYLKDFLDTLDTILPRTEARSPYNFVRDAKKLGLIKKSVADLYRDQKLNIVSAKEKVRALIDQYIESQGIDPKVPPIDIMSLDFKTHVQRHRSIKAQAAEMEFAARHHIDIHYDEDPVYYKNLSDKLQEILESLAENWQEKVEALRKYIEEIQTGRQTDETGLDPKTQLPFLNILGEHSDKSLTEIAALTVEIVNHIRQELRRVNWDRPVVQEDLRKWIAGYLDDQDAVNYEQLESVADKLVQLARKNRSRLIL
>NC_019763.1|WP_015211639.1|34578_35760_+|hypothetical-protein
MTLVVALMINELPAILGDVLISGYELEQPLSIPTIGDIYEIFPERTGWSITDLKQKVNIIDNNLIIGWAGSPPAARVIVSELKNRHSSQSFTKESLERFFIEINNDINRWIAKQEVGFIGYIKDSEGFHSFSHSFNGVLIHELNIPRYGNIKICGSGTYDMEQLLKQVSRRYSNSNLTNFDNVVIELLTLCGWFFADEMSTSRSLLQYYGGAYEVATYIEEEKSFKKINDITYLTWIVQDINIKPKISLISKIFKVAYVDNILFVYTIDFNFLQEPTVGRYDSEEYIKFLPTTINLYHILPLNTNLKDKMFEMPKQQELPDLINSEFNCNYLFLVTIEPEQPSGAEVICKPLRSSNKKSNYIKFIFEDEQLFLIVKSTYLEYLKNSFNVSTNS
>NC_019763.1|WP_015211638.1|33236_34577_+|restriction-endonuclease-subunit-S
MRKTIVKSEEFEDSSGESIPSGWQVYSLSELMNSIKSGLSRAITFDDIGVPVITSANLVDSELDATDLKYWYEKDPQGANIADYILDDGDILLNFINSVSQIGKVCIFRDLGRPAIYTTNIFRIKPNNKVTTKFFWRLLQSNHVQHWIQLITKPAINQASFTQPEFAAISVVIPESKQEQECVTEILDTMDETIAHTSSLIAKLKQMKAGLLHDLLTRGLDENGELRDATQRPEQFKDSPLGQIPKDWETPTFEEVTVDDAPICYGIVQPGSYIESGIPVIAIQNLNTDYRTNIHKSAQAIESGYARSRVCSNDLLLSVKGTIGRVGIVPSGFIGNISRDVARIRLKSLASPQYVRQMLLAPSFQERLEQVVVGTTRPEVSIGILRKLRLPLPPLPEQELIADVFNVHDSRIRIEEAYHNKLKLQKKGLMNDLLIGKVRVNCLGDK
>NC_019763.1|WP_015211637.1|32176_33244_+|hypothetical-protein
MDYLDFIASITERGQIKNFIESDAGVEQQEGKLYSVFAAWWQLHAPDLGKLPKTKKVMELRGEFLHSFVDSLEPVGLLDRFKVAGVVASWWDEVKYELRTLSESDFGGLVDSWVDTIRDALEQDDDTQKNQTKFDPLNHKLVVRLMPDYLEEIADAEAKIAELEQLKVAFEGGEEAQEGEASEEEAEAVNFAKELETRLKTLKGSIKEPKKEIKDLKKNLPLLNAAKIAELEATVEPMEAEVAEIEKQLEPYKDIKNQLNEAKGILRRLKKEVEKRLSAKRAALTDEDCQGLVLAIFKDGLIAELERYVTAHRQQVIVAVENWWDKYRVTLQDIETERDAACQQLSEFLGGLGYA
>NC_019763.1|WP_015211636.1|30635_32177_+|SAM-dependent-DNA-methyltransferase
MGKLTLPQLERHLFAAADILRGNMDASEFKEYIFGMLFLKRASDVFEQRYDQILQDNLVRGRTPEDAKMRAENPISYQEAFFVPEKTRWAYIRDELHEKVAEGLNKALADLEDKNQALAGVFSHIKFNRQVGGKIQLSDPKLRALIQHFSKYQLRNEDLVFPDLLGAAYEYLIKDFADSAGKKGGEFYTPREVVQLMVRLMKPQPGMSVYDPCCGSGGILILAKQYVEECGGDARNLALYGQDNNGGVWAICKINMLLHGIRDADIHNDDTLFNPLHIEGGELMRFDRVISNPPFSQNYDRKGMAFQGRFTHGFCPDTGKKADLMFAQHMMAVLKDNGLMATVMPHGVLFRGGEEKKIRESLIDKDHLEAVIGLPPNLFYGTGIPACILVMRGSKDAKPAARKNQVLFINADAEFYAGRAQNYLRPEHIEKITWVFENFKALPGYSAVVTKQELADNDYNCNIRRYADNAPPPEPQDVKAHLLGGIPKVEVEAKRPLLEAHGFDPTKILVEHC
>NC_019763.1|WP_015211635.1|29498_29870_+|hypothetical-protein
MFLRNLIRWILIKLKVIDKPDLSARIVKVHPAPEEIIPKQVFVVGDARYRKWACFRCPGECGEAILLSLKQTQHPSWKVTIDWLGRPTIHPSVRQLNECKCHFWVRHGSVEWCSDTAIAQRKS
>NC_019763.1|WP_015211634.1|28076_29495_+|ThiF-family-adenylyltransferase
MSFSASMVLQEEHLKYLQESLIRADGRERAAYVLCGEVVVESDPWDSQQRRKYLSYEILAVPEDEIVSSSDRHITWKTNSFVRALKLAQTRGMTVALVHSHPGGIAAFSEQDDRNEPDLAQLAQNRNGPQTKLPSVIITDSGELVGRLWMSQQESIPLQLICVVGKAIQLHYTGRGQGIPSSVFHRQSLAFGEALTQDLSTLRVGVVGCGGTGSAVAMLLPKMGVRLIALFDRDVVEESNLNRLHGATREDAEAKRPKVLAVARSLSELGLGVQVKSYQSWIGDRDCRDALKSCDIVFGCTDDHAGRLLLNRFAYYYLTPVFDGGLAIEVSPTEPPEIKALDGRVTALVPNHTCLLCREVINPVAARDEALKRNDPAEYERRKAEAYVLGEGNPSPAVVLFTTGVAIMAIEELVHRLQGFRGENGAIAQRVRKFHLMTDRKQAADSKSHCPICGTADCWGKGDIVPFLDLVE
>NC_019763.1|WP_041623807.1|27699_28080_+|hypothetical-protein
MSFLPSREREYLESKGIVFQEIIDGSHKGVILPGFRLPSNKYDVHQAEVLIVLPPGYPDVPPDMFYLQPWVKLEANNRYPTAADQAFRFNGISWQRWSRHNNEWRPGTDGIWTMLKRVEHALEVAA
>NC_019763.1|WP_015211643.1|40796_42614_+|type-I-restriction-modification-system-subunit-M/S
MKSEKILWQMLNIFRRHPHFTKYDSTQVALQILAWAKLSVNERLPSDLQLTKESQLTTFPELFNSFKKLSEYPELGENKAAFEDIAYLLHRDVSWGVVVDAIDFALDSAKNNLLNYFDFPEDFYLSFLSHGSPMPIEVIKVMSALAGELKEKTVYCPYDSLCLIAREVGKQGGIPSIETPWVSPIPWLISILTDANIHTIVSSDPLQRPEFLKEGNVQKFDFTIAFPPFGQKIDIEVVERDFFNRFKERTSSGSVLTLRHIIAQTEGKAIVAIPGNILFSRGAEHSLREDLLNQGMIEAVISMPPALLPFTAIPFSILILNTRDKASTVRFVDGAAEQFSTRDGRNRSKLVNWKLLIETFHKSNDEAIVANIPTIHILENDANLEVSHYLLPPAQKVVRHLLSRNETRKLSHLVEFLRPSKPLPKNETEGILALEVGLSDFPNYGYLTTPKRQVLLSPKVFNSQEKKSFLCPGDIIILVKGSAGKLAITPDNVPPVGPNAWVANQSSLIMRPQDSIIDPRFLFMYLCSDVGETLLKGIISGATVPLIQLQQLKDVEIIVLDRAKQESIISTFNEQVQIQDQINHLQEQLQHLSKVHWDIPSSTRG
>NC_019763.1|WP_150111721.1|43971_44163_-|hypothetical-protein
MYRTAAFTMEPSIARRIRVGAVEYRRRMPDAIAPSYSVCDFAVSKDVDARCDRSSNSEHQVWT
>NC_019763.1|WP_041623809.1|44694_46113_-|transposase
MLTNYVYKLRPNQTQDIKMSAWLDMLRSQYNWSLNDRINQYNQQFIQGDYCDLRTQSKACPLTCFVSKNGATGNPWKDSKVDKEGKIRNPRRSAGDIQITALPELKVSRPWYAGIDSTVLQQNVKRLDTAYKNFFDGRGFPSFKNRSNFKSFTYTMGVKIQGNKIYLPKLGWMRFHNSRSIPNGFTIKACTVRKRQNGWYISVRIEDSTIPEHTPKTIGDKPKVLGIDLGLTKLVHLSDGYQIDNPKFSTNKKAKRTLKIRQRRVIRKVKGGKNRKKAAIRVGKFHQKISDKREAYQWKVAHKIASRKVDIIAIEDLNISGIMRRCKAKTDEKNGRFLKNGQSRKKGLNRAISDASWGNLGLKVVYLAAKQGKTVVKVNPKYSSQECRNCGHTEKANRENEKFICNQCGYHEHADIGAAKTIRDRALSIVRGDSAKLGASSPKRPKDISTLKSSKRAEFGNPSNRDIKNAIS
>NC_019763.1|WP_015211645.1|46344_46779_-|hypothetical-protein
MRVTEKVQTTNANPTDKAHKTQIKALDKCISYNDKLRLMVLEVLREESGRELASVARFNGGEFDWETHNAQFRADYSETPLKELMRAGRILYGLTDMDAIRDRRAKHRGIRNQRLARQSSGIASSSQNVYQEVDVADDDIDDLD
>NC_019763.1|WP_015211646.1|47076_47778_-|hypothetical-protein
MATTTAKNHNSRPSNGAVTLNGKSNGAAKSKSPATATQSQVSRRSTLTVEEQADALLDRVRTTILKKFGVKIQLREKRLQTKVGHATKEKLGLDIAAQLKKRGKTMNWQRWNNEVFPALFGQPDALRHDMEVIALVMAKLYDVFELDPQEAIKGLVKFNQESLAKRNSYNKQDESDDEDDDDVDDLEDELDADEDEETDESEEDLDEDSEDDFDTEEEDEEDDADEDEDEDLE
>NC_019763.1|WP_015211647.1|48100_49687_+|AAA-family-ATPase
MRTINDWLALAQRGIKIVGLEYYTPDRIRVLAQFHNWGQELQLPVFFWNSGYSCLQEIVSRDGQCILQNTDLHRDSDVLEFLLESKREGIYILEGVLDFDESGQVSSRLGFQLANAYYHSSWSAVPQFWVMLENYIQLPVNLQPLIPVLTTPLPSRVAAQQVVELFCDRHPGLDDKSDEVLQGALVRACQGLPQGEIELILERSLAFASTVEEMAPLVLDHKVNKLRGRGLEFIAEADVPDAGGLDLLDESLSKVASLLSPEAEKYGLKFPKGMILWGPPGTGKSLSAKLAAKKMGVPLLAADWGSIVGSSRPDLALRELLELTQALSPTILYWDDFDKGFAGWDSNADGGVSRRLSGKLLTWMQEHQYPIYIVATVNRLGMLPPELIRRFDDIFFVDLPHEGAMYEIFNLHLKKYFPEFRNACISPWTDDEWRILLRDYRLCTPAEIGNAVRKCAEEIYYRDRVQGKRPDELKVTLNDLRQQRYQFTPSMLRDEEQILAIRNQATYARSASGEDRSRFSIPLQELFG
>NC_019763.1|WP_015211648.1|49789_51301_-|hypothetical-protein
MSSEESVFLTPEELRRYDNRTGFDLVSCKEVGLPVYKITVQALTQLRKPIPPIEEYVLKAINASLSSEVDIAGFLGLEPSIIRDAMINLRMSEDIDLIAPDGSLMQVWKLTKKGEGTLRDAKIIVPEERTFDINFDGLLRCPRWYGRLESRLLKQKDLRNQEIIEIEPSPKKPPELSDLKLKDVDAIIRQIEGASKAKFKQDRDLLALKAIERRQRFFQPALLLIYKAKDSDDIQVTFAIDGVLSNEHEAAFARANGVKKLRLLEALRESAPRKLAEEVLGHEFVAQAPLQEAEALKEEVSSAQAKIDTDRNSVAEAETDEDKAALEQKIIEQEQEIEILKQRLNSFQISYLEVYDHPEILKQAIQDSQKRLMIISPWIRANVVKKQFIEQLEKLLKCNIQLLIGYGLGKDEDDKKYPSDIQAEKNLKKLANQYKDNFILKRLGNTHAKILISDAKFAVVTSFNWLSFKGDRDRTFRDERGTLVSDPQKIDELFDSYRSRFND
>NC_019763.1|WP_015211649.1|51297_54747_-|protein-kinase
MPARLINDRYAISPNPRSGGMADVYQASDMLDDLRRVAVKEFKHGQIEADILAESFRRETQALQELKHPGIVELLDSGKDETTGNYFLVLEWMEKDLATLLKKSPPDGWDSFWKAVALPVLEALAFSHNRRIIHRDIKPSNILVGSDGKLKLADFGISKLKGYLQPSITLKDFVSRTFTPPETDDGSYTYTRDIFSFGVLVLKCLTNIELTGHNSIPSAMKAFNAPPEILEIIERAVSLDPAERQPNAEVLLAELNAIQAKTKTGAIKKPPCFLKLIPKCLNRLKSEIEISSEVEIENLILDDLNNESGCGIRPYKFKDDADDPSREDHYEIYGVSYRYHMKVDQNRGNHLVIFNAWSTPYSQLEQRRDRAWNLSYEFKFGTPLNLYEAKEVIQKLQDAVIEHEANLKEQEDEKEKQRIFQVWWDILRAKTDWEKKREKPIKYTSVTRDGNRVTFELSELPEDDLAGQPHHVTNQKGFSILGGDVEQIISDRLTLYVKYGEPDRLPQSGELRFDTRAAEVALNRQKNALDAIRFDQGVRSDIRQLLVNPQEVRTPDVEVDLQFIQPLNESQQEVVKAALATEDFLIVQGPPGTGKTTFITEVVLQTLKANPDARILLSSQTHVALDNALERIQAKNPNLKLVRLGNHERVSENVHSLLLEEQMEQWREGAIAKGQEFIDNWSAQRGISQHNSEIATLFQEMKTLVTKIESLRGDVNIWKEDLDKILAINYNPENPDSLLETKIPKDKLEECQSIEAEISILRKQLKEAREQQKEKAKRLKELTEISINKLLRLSVQEIEERINKLIDPNAPDAKMLQRLIAIQAEWFDQFGRNEKFNAPLIKRSQVVAGTCIGIPRDIQDIEFDLCIVDEASKATATEVLVPIARSHRWILVGDPKQLPPFRDEASRDSDFLEKYELNQDHIRETLFDRLLRTLPDGCRKMLTIQHRMVAPIGNLVSECFYDGQLKSARTDLDQHLRSVLPQPVTWLTTTKLPNSREQSANSSFNNICEVNVIVQFLKQLNQTAVKAQKKYSVAVLSGYAAQLKLLARNLASELNNWQALTVECNTVDAFQGREADIAVYSVTRSNKEGKVGFLRDAERLNVALSRGKVGLVIVGDHHFCRTSHDNPLHRVLDYVESHPKNCAIKEPNL
>NC_019763.1|WP_015211650.1|54874_56671_-|bifunctional-3'-5'-exonuclease/DNA-polymerase
MNNSPHFAPNPIVEYELITNFSRLNDVLSPLIKARVIAIDTETTGLDPLTERIRLIQIAVPHRPVIIVDLAAFADRELSPLKALLNSRALKIFQNGKFDWQVLEIAGLRPSGPFFDVMLASQVLRSGLKKDHDLQSLALEFLGIKLDKSLQSSNFGGKLSAPQLEYAALDAAVLLKLRTRLISKLQNAGLLETAQIEFEAMPAVAQMELNGMLLDAKHWHLVGEELEAQKQTTLVELVKAGLKPAPSAQLSLFPEMVETINPRSSVQVLSALQALNIPIKSTSKSELIPLARQYPIIQLLLNYRKLASLCSNFAEALPKHIHPITGRIHPSYRQCGARSGRFSCKKPNLQNVPRNCTANGMRACFIAAPGYQIIKADYSQIELRIVAEISGDRRMLNAYAKREDLHTLTASLITGKPLEEVTAEDRRIAKSVNFGLIYGMGAAKLQAYAEEKYDVFLTLNEAKEFRRRFFQAYSGVRRWHDSIRKTVYVKDIKQIRTIGGRRRRWAKKPRLSELLNHPVQGTSADMLKVAIARLFKLLPKTGAKLIGVVHDEILLECPQTTLKRTSRILKKVMVEAGELYLQQVPVEVEVTISSSWAS
>NC_019763.1|WP_041623832.1|56864_57449_-|SAM-dependent-methyltransferase
MKDTSSLAEMLYERIREAPPYSWFPSPPELIELMIEEAQIISGTYALEPTAGDGLLAQAMVRAGAIVDVIEINPLLQQLLFQKGFNLVGSDFLTTEPQRRYSRILANPPFSTPHIKGVDLDIIQRAYNLFLGNSGRLVSVVSNSMNVRGDPRSQAFRAFLKRTSAKLIELPLEIFWGSDRPVTVESYLVVIDKK

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Crispr_ID: NC_019763_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019763_2

229867-229963

Unclear

Consensus_repeat	Method
TTCAACAGGCGTGGGAATTTCCAAT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_019763_2

>merge|NC_019763|2|229867-229963|CRISPRCasFinder
TTCAACAGGCGTGGGAATTTCCAATGGAAAATTTTCCATTGTCACTGTGGCCCAGAGCCAGATTTGGCTGAACTTAACAGGCGTGGGAATTTCCAAT

>NC_019763|2|2|229867-229963|CRISPRCasFinder
TTCAACAGGCGTGGGAATTTCCAAT	GGAAAATTTTCCATTGTCACTGTGGCCCAGAGCCAGATTTGGCTGAA
CTTAACAGGCGTGGGAATTTCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019763.1\|WP_015211764.1\|227534_229226_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_019763.1\|WP_015211765.1\|229283_229661_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211768.1\|231654_232134_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211776.1\|244841_248747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223496
NC_019763.1\|WP_041623858.1\|220973_221159_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211767.1\|230480_231662_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_019763.1\|WP_015211761.1\|223033_224038_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238509
NC_019763.1\|WP_015211775.1\|243562_244777_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211760.1\|222342_222837_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211771.1\|234229_235924_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_041623860.1\|232494_233178_+\|mobilization-protein	unknown	unknown	gnl\|CDD\|349771
NC_019763.1\|WP_015211774.1\|243139_243553_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211762.1\|224069_224705_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211763.1\|224977_227062_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_019763.1\|WP_015211759.1\|222048_222300_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211758.1\|221349_222045_-\|siphovirus-Gp157-family-protein	unknown	unknown	gnl\|CDD\|368503
NC_019763.1\|WP_150111739.1\|233327_233858_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377620
NC_019763.1\|WP_015211756.1\|220210_220912_-\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211772.1\|235947_237273_+\|hypothetical-protein	unknown	unknown	unknown
NC_019763.1\|WP_015211773.1\|237265_243052_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|224126

Protein	Function_ID	Function_description	E-value
NC_019763.1\|WP_015211764.1\|227534_229226_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.20431e-19
NC_019763.1\|WP_015211767.1\|230480_231662_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	4.9023e-36
NC_019763.1\|WP_015211763.1\|224977_227062_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_019763.1\|WP_015211773.1\|237265_243052_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|224126	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only].	1.40438e-40
NC_019763.1\|WP_015211761.1\|223033_224038_+\|hypothetical-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	0.000763868
NC_019763.1\|WP_015211758.1\|221349_222045_-\|siphovirus-Gp157-family-protein	gnl\|CDD\|368503	pfam05565, Sipho_Gp157, Siphovirus Gp157. This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophages. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage.	1.10008e-06
NC_019763.1\|WP_150111739.1\|233327_233858_+\|hypothetical-protein	gnl\|CDD\|377620	pfam06166, DUF979, Protein of unknown function (DUF979). This family consists of several putative bacterial membrane proteins. The function of this family is unclear.	0.00393143
NC_019763.1\|WP_015211776.1\|244841_248747_-\|hypothetical-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0.000256643
NC_019763.1\|WP_041623860.1\|232494_233178_+\|mobilization-protein	gnl\|CDD\|349771	cd05386, TraL, transfer origin protein TraL. The transfer origin protein TraL is member of the SIMIBI superfamily which contains a ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. The specific function of TraL protein is unknown.	1.23957e-17

>NC_019763.1|WP_015211765.1|229283_229661_-|hypothetical-protein
MSRSKRIKRIAVYLTPEELQLAETMAKNLQVSISSLFRYHTFKQQHQPALCQKLAELNLRLKPIALATEQALWMGEKITQPANFEDLIEQTLALLKQVQQQQMNVPLLMNLSDIEENLEAPSENF
>NC_019763.1|WP_015211764.1|227534_229226_-|relaxase/mobilization-nuclease-domain-containing-protein
MIGKQKIGKTFTPLLNYLFSKEGASLIGGNMVGENVQELAAEFLFSKQLNPRVEKPVYHATLSVPDGEYIPDAKWRAIALDYLEGMGLDKNLFAIIRHTDRDHDHIHIAASRIKLDEQGTCVSDSWNYLRSEKLIQELEEKYDLTPASRSFDKERRSPTTGEHRRLARTGEISTREQLQTALDRATTDSPALALLIDRLVEQGISVKIEPTPAGELGISYKLGNIAFSGTHLGKAYTFKGLQKYRGVTYSANTDINVEAIPPLQERELNEILETENSKPNSDANNDSDADDCGEMRNSSIESNSSPIYWQTYSNIDRPEREGSSTGTSSETDKDSLISESEDVGKPDSPNERETSGFDSLNWESVRSNLIENACLPVELIDLLHDRGWIDADSLNRPVFQLRTLAGEYRGTCTLDANGKFSIDSHEEGSHQGGDNSEKGVFWIAVQNNIERAIIASNPVELLSVIALDPDFNKRPTLYLSIDAVSSLPTGFLKEVETIVVGFKGDRDGDRLSKEIIETFPQSKRINPGFAGWNAILASQEQENENAFNDRDEAIDRNFGIILD
>NC_019763.1|WP_015211763.1|224977_227062_-|ATP-dependent-DNA-helicase-RecG
MKLHSPICDLPGLNPSNYKMLERLGLATVRDLLLYFPRDYIKYRRVKIYQLKVGDSVTVVGKIEHQEVVSPPKNSRLTIQTIIVKDKTGKIACKRFFNHPYYQSKKWRNEQAATYVAGGIVAICGIVKADRYCGMALTSPEIRLIGLDEAKDTKNSIIPIYPLTKGVSNEIVQDAVTSALESAKLLNDPLPQEFRRQHGLMELQKAIANIHQPPDETKLEAARRRLVFDEFFYLQLSFLVRRHRLLARSALTKITPAGPLIQQFYSQLPFSLTSAQHRVINDILNDMTSKTPMNRLVQGDVGSGKTVVAVVAILAAIQSGYQAALMAPTEVLAQQHHRKIAAWFERLGVSVQLLTGSTKTAKRREIHAQLETGELSLLVGTHALLQEKVNFNKLGLVVIDEQHRFGVQQRQDLLNKGNRPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQKIHTKVLNKSASAYDLIRLEVLRGRQAYIILPLVEESEKLDLRAAVAEYDRLSAEIFPEFSVGLLHGRMTSAEKDEALKSFRDNKTQILVSTTVVEVGVDVPNATVILIDHADRFGLAQLHQLRGRVGRGSHRSYCLLLNTSKTAEAKARLEVLEKSTDGFFISEMDLRLRGPGVVMGYRQSGISEFALANILDDKDLLNLARYMAVAIVKSNPNLEGHPLMVAELKRRGLTSWDCTLN
>NC_019763.1|WP_015211762.1|224069_224705_-|hypothetical-protein
MNGYLIYHPSRTKSVFDSIVVYHDTIVGNQDPYIWNCKFLHSYCHITQMSSIVNNINFWVSGDTFPNFNNLYCDLVFIIKEKTYWKNANTIDRTDATIDTDEAYLDHYRWAWQHPFKRRRRFTLKADPDNSFQPQNAFQELIDILPFLLEQGLTLPEIRRGMRAGFNSKPFSLNASLAANLYSWLDRTAAIKLEGAKLQKIRENNPHLASL
>NC_019763.1|WP_015211761.1|223033_224038_+|hypothetical-protein
MSKIRGFYPVILIPDSIRQFCADNPIPILEESASSTKKIPFPPRPPVSNNSRYSLVIQLWIASIAVVMLVNWLFGMSVMAFWSSLTCSSVSVVAAFSYLRFVDFQVRDRYKQRLADYQQQLSKYESYQLCRLQLNHKETEQYNSLLQERSKLFNISLREIIQQPASQSKGGVQQGVSEKQFFIYLCRYFSGFYDFCMGGEFPIPGTSFRYTADFILVHQPTGLAIDIEIDEPYDGRTGKPHHCVDRNKDNQRNQFFLERNWVVIRFSELQVVKYPDSCCKAIARVVSEITGDYRGLVQLQNVKELLPQKQWKVKEAVYMAKAKFRNSYIRNNFC
>NC_019763.1|WP_015211760.1|222342_222837_-|hypothetical-protein
MPTNQPNNTQKIATDRLKSTRDKLTRKIKLALKTATPEETLEVWMLMKRQELQRTTPGLSEQQMESVVRSLILELGYDIIATSTASPAAASPEPEVQTDESEVDDADEDNDADFTNDDLEGDEDNFSEELSDVSEEKLPSRKQRVPALKKVEKLRASTRNGKHY
>NC_019763.1|WP_015211759.1|222048_222300_-|hypothetical-protein
MSLQQCEADDTTNTLISYTNTSLLGRVDFKSDSLELIPETEILEVGDESIDSHSLEDELTPGTLAILASIETFDEYFHCCGRW
>NC_019763.1|WP_015211758.1|221349_222045_-|siphovirus-Gp157-family-protein
MYLAKDLLARYSIQAVELWNQLETAETPEEEEAILKEIWENQTNQEIAADTQAELADQLDAEICAVKARLKHLVELHTEAIERLERWRSSLDKTLLQFHSMGVIPTEIVGISRHIRLKENPPSCEVLINPCELPTEYRTEKLVVTPNKRKIVADWKQGIPVDGTRIERKLRVEYGIVPSNLTSATEVISNRAAAPNTQENHSTITQNSRRKEKAIAKSADGSNKKMKARAG
>NC_019763.1|WP_041623858.1|220973_221159_-|hypothetical-protein
MLIEDGDNRLDISFPIKDGRLFVLLGSIRAAVAEAMTDYLEVEAYGDEPLLLLSGSLNKFN
>NC_019763.1|WP_015211756.1|220210_220912_-|hypothetical-protein
MKWLTPEEAVAAANLSVTSEQLIEYTIQPEDEETIEEKFQKIGLLFDRDRWQAKKHYLGLLSPAKVKKPVATESSTSASDSESIDDDNWAEEDEENAVSETEESHNLQSEHQEEPYILEKCTVEVHLRFKPDDGHPDGRIVIISASSHRDFPVSEKIRESSLGELPPPLKELLKELVADFPNCQVRRQIANARNQKKRSANPNKPGSEASSTTTSTTSTESKTTGTQLTLFGI
>NC_019763.1|WP_015211767.1|230480_231662_+|ParM/StbA-family-protein
MSETTIDTIWPQAIAACDYGGSATKILYAGPKNQIRLLCMEPEVVSVPHESILAYGTDQLGSAEPENTAWVAFRNDYRAVGYLAKERFHANAGLSELKYERALHKTLAGMWAIKEKLNLPAKFTAAIAVLLPPGEYEDRGRFERVLREALADYQTPTGQMSVELLAFNCKPEGGGIYLMHNKKVGSVLKERVCAIAMIGYRNASLLVVQRGDVRPGKTSDLGFIRMVERVVARTSGQTAERLTPAIAAAGSEFKAAPLMRLARSTTKQGRAEEVQQMIAAIKEARPEYARSLTSWLDENLPPDCDELVFCGGTADYLGKELNEHYDRFPIIWNAEIAMPPILEKKGFENRLNDVYGMFSYFKANLKKQFNSQVTESAVCGSKTSVLQEIVGRG
>NC_019763.1|WP_015211768.1|231654_232134_+|hypothetical-protein
MAKEKERVDFLWRYQPLKSTHDGVLMSYIKGNLLLPSREMILQSLRPYWLPLAYLEKENIDPVILGRLFRNAVYALEKHALYLRERGGIEYPPTNIGGMPISKIPFSREVPAGIEEADRSLLYGVESLTPPNHSTRSGLTADDFFELEGGEDFDDSGFA
>NC_019763.1|WP_041623860.1|232494_233178_+|mobilization-protein
MHLIDGEKGGVGKSLFARVLIQYFLDKNFPFFAVDTDRSNPDVSRIYESVCREALFSEDEKKFYEADRIFELAFEKSVIVNLPAQVYPLVTKWMGRNNLIELGKQSRISFCKWFICTGGYDSVQLFLKSVKHFDNKIAHVLVRNLGLEDDWSSVEEMEEVQNAIKKYEVKVIDFPKFYSRERNAIDARGITFDLARNSQELGVLGRQRIKSFMLSAYEAFETTGMLP
>NC_019763.1|WP_150111739.1|233327_233858_+|hypothetical-protein
MEVLIQESPKPEDFELAFDRWVGRINKTLASYERVAVEKQEGKIAQAVNSLVRQTELTRWRTSALALIPAAGILLVALGVGALIGWMGLLWSQGGLAPGEAVSLTQEQAETLRWATSAEGKFARNLMRWNSDSLTDLECKKDVKRLGVTLEVAGRPAISGFCTIWVESPEYRKFKD
>NC_019763.1|WP_015211771.1|234229_235924_+|hypothetical-protein
MASYREWNQALVSYFTSGVPRGTKLYVSVDDDVLERIGLEFGKDTGVNNGRDDFLIAVRKKVILDQQVNLSNLRGCDSDGLPKSIAFLSATVLAAYQMAEEEKISELNYFRRLQNILGLSGACRPPGMEFGYGAEEPLWKEWNLWLRQQGFLPSAVRGRGGPTTYINYPISQSLLRHADKNRLLDLFNEKQWTAQWDAQTLFTHVRRETSRLCQHLKELLTSNRQRYEAVAEAIHEVYEQWQNEGKPVTLKQGVRTWSRYLFAGLYRTEDPFLGQIDYYLYPKQLKGRPVESVQVQYRDNVHQLRDERAGWYFPLKDPINRNELDRGARYQISCSTDLDSLILPERNFWILIPDPDNPDSGAYASWGTPSLGTPFILLYKKELLSDIQRLQDEQLLKWQGGAQPVFKNSTWFEIHTCMVVSQAWDAVFIKSQELKDALQPSVRLSISFSGGLRVPQLGAWLEGHSPLVTIFGFHPTVELQVTRLSDDSQIWEKLQQSTNIPIVVNFPSVGDYLVKATCGGESSERFVRIVDWSGLSIVEPSSCEVMPIGSSHNICGSVLQSLAQ
>NC_019763.1|WP_015211772.1|235947_237273_+|hypothetical-protein
MTKIQRWYRGFSYKGNPKQLIQEVSKHIQHQNISQYVPLLRLEKGATSRKSFYFFLAIESSTLGEIPLEIVNSNLLKFPCFKTSAVPGNKSFTYEQIKSMVGAAHEVYDYTNPIPYQPVEKVTYDNPFEASASSPINQSSPDIDEALSQRYEHLLYWLSTLGSGTWESFKKACDALRLEEPKRILRRLRLLGHIESSSDGTRWSMAPTALVKIKSDSPEYLLCGQRSIKLLKELEKYTDIISSHQSRRDAPPCLRLNLSDFNIITSQFSILYAGEVSSRLAEIIPNIDIWMQNLRSLQGIVPSIYEWKRFDGNDFVSCISPNQTGMYQMWRIEESDRPGYTLFYDQESASWRQGDWYGLRFLALQHSGFECIARYDRAIGRLAIPVSQRWPEIYERALVLASGQLPTYQNSWLVYENVPMEVISLLTDKLNVKCSEVPASA
>NC_019763.1|WP_015211773.1|237265_243052_+|DEAD/DEAH-box-helicase
MHDLVGAYQRLDRIYQLYIKSAFPLRYRALADERDRILQKPGTLSQPPLVEPVPIYPSSGMNLSAAANQLPSEYHNLAELGQMIFDPGVQLYRHQWESLREVLVNQKDLVVTTGTGSGKTECFLLPLLAQLARESSTWSANPPTLNNYGWWNGNGNRVSQLAHTQRPKALRALILYPLNALVEDQLRRLRKALEAPSVHQWLDQNRGRNRITFGRYTGQTPVSGIQKDESIKRLRNELREIEQERQKIETAIQNNPSLLHDMPDLPYYFPRLDGGEMWSRWDMQDSPPDILITNYSMLNIMMMRSIENNIFDETCNWLASNPNNQFFLIIDELHAYRGTPGTEVAYILRLLYSRLGLTPDSPQLRILTTTASLEENQQGKDFLREFFGRDNFAFITGQQTPPTSGERFNLSSYQYQSAFAQFAQSVQADPLQEMQPPDSASNQVRDAMSNLAVQLGQPVASGLSAEQHLGEALATVGAAAALRDACREIDRLLNPNNPNPTVRAAKVRDPDNSNNPTDLDRQIFSGAATNGLVSDAMRGLLLALGMSQRVSTGRSPQPVRGHLFFHNLQNLWACCNPDCTDDSAVDRTIRNNDPNPPTVGAIHATHCLSCSCGSRVLDLIICEVCGEVFVGGYRATRRIGNTNIEILTPDQPDLEGIPDRITLNQRYGNYRVFWPLPGETPVWDTQPQDPEWTLDKIKRKWVRAKLNRSTGAIAQNNAQPQAEEIPGWLYQVVGNHPEERALPSKCPRCDADYGKRDKFPTPLRFHRTGFQKACQVLASGLLREMPSQQSPTGASSRKLVIFSDSRQDAAKLAAGMERDHYRDMARMLLIQSFQDYWNDLVAFLRITCTNNQAALARLQALNPNLHAAVTSSSCLDDMERRNRFGNAYSTQVNEAVSWVMDSPPFNPQARNQWLDLLQRYPQRILLLDLRRTVRDKLLEYGICPGGTDFKALKYSLGQGNGQNWQPWFDCYHWGSNSVTPIVSPTPQQSNHINRLEDLLTAELMYAIFPHIARTIEGLGQGWVSYQPQGNPTPNLIQATEAVIRQLGTRKLHRYFPYFRLGTDSNLSNFAQRYITKTSLAPADIQQQLIQSHVGIPSGGGLALDPDRLYLVLPPAANPDGLRPGFRCPQCNAFFLQPAAGVCPECNSDRRSNNPNFSTIQLIPGETTSDFDYYTYLSEQSGQPFRMNAEELTGQTDKKERTKRQRWFQDIFINDENGRVQGINLLSVTTTMEAGVDIGALLAVMMANMPPRRFNYQQRVGRAGRRSAGVSLAVTFCRGRSHDDFYFQRPESITGDAPPPPYVDMKSQEIFQRVLRKEVLRQAFTDTGITASLGGTDNVHGEFGDVANWPNYEVAIAGWLNNPANEPKILSVLDILRVQTTLPNASNSQMLNYLRDQLISDIQTEVNDSTYTQNALSERLANAGLLPMFGFPTRVRLLYTRWPSPGAQWPPETGIVDRNLDVAISQFAPGSETVKDKAVHTACGVVELYPQGNTIASDSGFAPALPNGNQSLGLCSNCQAVMYPHIILNQPLPGGQTPPTTQCPVCGVNDAMRCIDAREPKAFFTDLQPEDFDGQFEWQPRSTRPSLSIPPNDDGRRANNGTPAFVLNASVSAFNDTIISVNDNGGEGGFDFQQATVFGRQKPGAYTVSSNPNSLVGTSGLAYRVALLSRRKTDILLVNLVQWPNGIFATPTTVEGRAAWYSFAFWLRVAAASLLDVDALELQAGFRSLEQNGAIIGQAFLCDQLENGAGYCRFLAQPDEFQQLIDRADPTISNSIAWKWTNPHEEHGSKCDTSCNLCLRDYQNLAYHGLLDWRLALDMARLVSNPASAIDLNSSWDHFQNPWLNLVQGPIPATLQRLGYGASVPFGTLTGYVHQNARRRTIKMIRHPLWNDDHPEWIAAVASAHTQYSGYEVEAANPFMVLRRPGDCA
>NC_019763.1|WP_015211774.1|243139_243553_+|hypothetical-protein
MPWSENLPDGCPPENAHPVAGSVYRFVDKDPPQLEDFLSWREMNPSEPCPKGLTECQTCGLSVFTTEEGVCTALRRKPFLREKKVALGHLSPDLDLGVIQNTPAKGTGKNHHTWWFPENTEAWKEFQIVTITCPNTE
>NC_019763.1|WP_015211775.1|243562_244777_+|hypothetical-protein
MRLLPQSTHLGKLELIEVYEYYDTPCLFSCRNISGHLFIAILYSQTKKLEKWLYVSMSKRRFENIRAGLIDIRNAFLNSEDGFVYEVIINSDDSPDKVEIIWCENLIDDWLPMPNEFIEVGNELPLIWEVKDAPRTAIQIQRETLNLTFQFPTPNPTEAPVAFLGRILESVQSVFNALGQAIDGTPTPTGMIPRSITEKTQLTVLGTFPGSFGIELATLPEGIEKDNANYLVEIALNEFLELVKMSGNPEDNADILRQKLWTLKSRVASGYRDFLLNLSKSETNLRFNWGSPNHERGGSVELPLSSIKKALKVISRTEDETVREYEIIGKLIGLNIRTKSYEILANETNKKYLGRIIDEAIPRVKTATLSEIYFSTIREVKEISPTIPEGKLKYKLVALHPHRS
>NC_019763.1|WP_015211776.1|244841_248747_-|hypothetical-protein
MKRLLEQLNSIQAIVDTVNPSQIENEPQEVARVYNLYASSYNPIEPVKTLKDHLVEEIGKGKPVTGYLSADYGYGKTATLIYLWQQCQDHKIMAVPPFKFKELGDLMVATYGWIKTCLQPEFIPQIEVLYRKYGLKSQQNIAAEIALKYKLSEDKALKIIQQLNTDTTNTDNVLNFWQETVSILRQAGFAGLAIFADESQEFLRTEEGASVRIQILSDLVKGMRALGSTPVALILSMPTTPTESAIEEQAGDIIHRMKEQKVSLRLAGAYSSEFPGKLWNYLCTNFLEDKAQQNHLAHPATIESLGQLCDRQNFSNGPRTVIEVFKRIVHFAQNNQHPYTPLDLIQDYLEGQVQLYGTEQHKISNTIKTLEPLISFPKHPKGREVIKLLAGFPSGLSENVAKQFHLLKELKKLAEDDNFYGLHIIQPTERTFALVALLQTSIPTVVDKILNRFRQQWFGEWNDTQKEEMATTIFKSEIISLLFPVSRTGQKANWSWRYKGEWKQDRFGVFNLLDGAPERYNGDFPKRSLVISVGSKESGLMRFQSPEETHLDWRFYFSYERKATVVPQVLTAIAGTNQVDFHLQLGRSFEGEYPTSFGLLRKVMASEQCSVCTLLSLSHYIQDWLSKNPEVSKADRSRLEHHRQECHQYAMRLLFPAISPQTWEIGGLKGVNGSDSKLIESVFYQKCKALFTDYKSFYNSLNPTLRKYKFLLGKIPLSVRKGRQLYQVSKEEFEKLFEMGSSSLPSVLAVFKQHGLMSGEKIAKRKEGNSQVKFTEHPLESFIKEKLQSQGRTQTVETTWGNQDVKALEYSKLWKAVKLLGYLEDEFQEALEWLQRRRYIEWARSTDVIREASLELEPDELNAQLKELRVRVSSLLETFDETILHEINEKINEEEKIIDANHESEVALDQVHRNIQAERELLENFCIERRSTLQKELRGIKLRLEKFTLDLNASKISQMIESDSGLESCLNDYRIILERQVNQLDKDCQSLASSLKVNEIDILALHHQLKHCQQFLLTYETTKLRLEELVDGLEKWRIILNRAQMLRENLNKDPVRLMRYDDDFVDRVVKHFSNNQLESFRQYDLLQQPLVELEEEINGEQRSRREAFEQMLSRYEVLLDLISINESPLKNRCKFDDEDRDGSYQIMKGVLWEILQKFCEGLVSEWEQLERDFSFISQERDHDMTEFLSQLTDLKTQLSLQREQLRSAIDNLTNLEERITQLKSIFEYGQVLQDKLKEIHFKRDESLQEEERQLLNAISSDNSAIAISQLRQNLPHNQEVWELLKTLYKKGHLEIILRRRD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019763_1	1.1\|40317\|47\|NC_019763\|CRISPRCasFinder	40317-40363	47	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	40317-40363	0	1.0
NC_019763_2	2.1\|229892\|47\|NC_019763\|CRISPRCasFinder	229892-229938	47	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	229892-229938	0	1.0

1. spacer 1.1|40317|47|NC_019763|CRISPRCasFinder matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 0, identity: 1.0

cttgaggaaacaggtttaagccgagatgcagcagcgcgctttatcgc	CRISPR spacer
cttgaggaaacaggtttaagccgagatgcagcagcgcgctttatcgc	Protospacer
***********************************************

2. spacer 2.1|229892|47|NC_019763|CRISPRCasFinder matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaaattttccattgtcactgtggcccagagccagatttggctgaa	CRISPR spacer
ggaaaattttccattgtcactgtggcccagagccagatttggctgaa	Protospacer
***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6905 : 70325

uncultured_Caudovirales_phage(15.38%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015211613.1\|6905_8063_-\|transposase	transposase	NA	NA	NA	NA
WP_015211614.1\|9937_10333_-	arsenate reductase, glutathione/glutaredoxin type	A0A2H4PQT9	Staphylococcus_phage	1.2e-18	45.0
WP_015211615.1\|10397_11057_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-75	66.0
WP_015211616.1\|11087_11561_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_015211617.1\|11635_12346_-	aquaporin	NA	NA	NA	NA
WP_015211618.1\|12447_13476_-	PstS family phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015211619.1\|13592_13952_-	winged helix-turn-helix transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-07	46.2
WP_150111718.1\|14376_14610_-	hypothetical protein	NA	NA	NA	NA
WP_015211620.1\|14584_15073_-	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA
WP_015211621.1\|15131_15407_-	thioredoxin family protein	NA	NA	NA	NA
WP_015211622.1\|15528_15843_-	thioredoxin family protein	NA	NA	NA	NA
WP_051041623.1\|16040_16280_+	hypothetical protein	NA	NA	NA	NA
WP_150111719.1\|16947_17280_+	hypothetical protein	NA	NA	NA	NA
WP_041623806.1\|17832_18567_-	response regulator transcription factor	NA	NA	NA	NA
WP_015211625.1\|18758_19838_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	9.3e-18	28.5
WP_150111733.1\|19834_20398_-	hypothetical protein	NA	NA	NA	NA
WP_015211627.1\|21162_22089_-	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	9.4e-11	28.5
WP_015211628.1\|22078_22840_-	ParA family protein	Q8JL10	Natrialba_phage	2.1e-16	32.7
WP_150111734.1\|23163_23700_-	hypothetical protein	NA	NA	NA	NA
WP_015211630.1\|24185_25757_+	hypothetical protein	NA	NA	NA	NA
WP_015211631.1\|25745_26213_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_015211632.1\|26222_26774_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_015211633.1\|26773_27136_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_190274463.1\|27183_27696_+	multiubiquitin domain-containing protein	NA	NA	NA	NA
WP_041623807.1\|27699_28080_+	hypothetical protein	NA	NA	NA	NA
WP_015211634.1\|28076_29495_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_015211635.1\|29498_29870_+	hypothetical protein	NA	NA	NA	NA
WP_015211636.1\|30635_32177_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	9.0e-83	36.8
WP_015211637.1\|32176_33244_+	hypothetical protein	NA	NA	NA	NA
WP_015211638.1\|33236_34577_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_015211639.1\|34578_35760_+	hypothetical protein	NA	NA	NA	NA
WP_015211640.1\|35740_38920_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	9.9e-60	26.9
WP_015211641.1\|38916_39615_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_150111720.1\|39775_39985_-	hypothetical protein	NA	NA	NA	NA
WP_015211642.1\|40103_40607_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_015211643.1\|40796_42614_+	type I restriction-modification system subunit M/S	NA	NA	NA	NA
WP_150111721.1\|43971_44163_-	hypothetical protein	NA	NA	NA	NA
WP_041623809.1\|44694_46113_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.2e-41	36.6
WP_015211645.1\|46344_46779_-	hypothetical protein	NA	NA	NA	NA
WP_015211646.1\|47076_47778_-	hypothetical protein	NA	NA	NA	NA
WP_015211647.1\|48100_49687_+	AAA family ATPase	U5XGM6	Phormidium_phage	2.3e-41	37.5
WP_015211648.1\|49789_51301_-	hypothetical protein	NA	NA	NA	NA
WP_015211649.1\|51297_54747_-	protein kinase	T2AWK4	Cannes_8_virus	5.2e-14	30.0
WP_015211650.1\|54874_56671_-	bifunctional 3'-5' exonuclease/DNA polymerase	A0A2K9VER8	Gordonia_phage	2.1e-43	29.1
WP_041623832.1\|56864_57449_-	SAM-dependent methyltransferase	A0A2I7RNS1	Vibrio_phage	1.2e-24	38.6
WP_015211652.1\|57504_58185_-	hypothetical protein	NA	NA	NA	NA
WP_015211653.1\|58546_58885_+	hypothetical protein	NA	NA	NA	NA
WP_150111641.1\|60694_61761_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_015211654.1\|62671_63217_+	hypothetical protein	NA	NA	NA	NA
WP_015211655.1\|63400_64105_+	hypothetical protein	NA	NA	NA	NA
WP_041623810.1\|64327_65350_-	hypothetical protein	NA	NA	NA	NA
WP_015211657.1\|65759_67172_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_051041625.1\|67200_67473_+\|transposase	transposase	NA	NA	NA	NA
WP_150111735.1\|67513_68092_-	hypothetical protein	NA	NA	NA	NA
WP_150111640.1\|68633_70325_-\|transposase	IS1634 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_019731

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019731_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019731_1

8878-8974

Orphan

Consensus_repeat	Method
CAAAGGGCTTGAATTTTGCCCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019731_1

>merge|NC_019731|1|8878-8974|CRISPRCasFinder
CAAAGGGCTTGAATTTTGCCCGATATTCAACTGTTCCGATAAATGCCATCGATGCTATGTTAGCCCAGTGTGCCAAAGGGCTTGAATTTTGCCCGAT

>NC_019731|1|1|8878-8974|CRISPRCasFinder
CAAAGGGCTTGAATTTTGCCCGAT	ATTCAACTGTTCCGATAAATGCCATCGATGCTATGTTAGCCCAGTGTGC
CAAAGGGCTTGAATTTTGCCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019731.1\|WP_190274482.1\|7066_7213_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179819.1\|27095_30758_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|238043
NC_019731.1\|WP_190274483.1\|7874_8189_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179803.1\|219_486_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179808.1\|3582_6966_+\|DUF3854-domain-containing-protein	unknown	unknown	gnl\|CDD\|372412
NC_019731.1\|WP_015179817.1\|25246_26065_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019731.1\|WP_015179816.1\|22449_24246_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_019731.1\|WP_015179807.1\|2802_3324_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179815.1\|12842_21833_+\|DUF4114-domain-containing-protein	unknown	unknown	gnl\|CDD\|379190
NC_019731.1\|WP_015179813.1\|10223_10910_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NC_019731.1\|WP_083888267.1\|24345_25149_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|366523
NC_019731.1\|WP_015179818.1\|26197_26995_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019731.1\|WP_015179814.1\|11483_11783_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179820.1\|30884_31496_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019731.1\|WP_041623968.1\|1694_2348_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019731.1\|WP_015179812.1\|9717_10227_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179804.1\|1016_1181_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179806.1\|2565_2799_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019731.1\|WP_015179819.1\|27095_30758_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|238043	cd00091, NUC, DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases. They exists as monomers and homodimers.	6.18266e-09
NC_019731.1\|WP_015179813.1\|10223_10910_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.00725153
NC_019731.1\|WP_015179820.1\|30884_31496_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.76092e-20
NC_019731.1\|WP_015179808.1\|3582_6966_+\|DUF3854-domain-containing-protein	gnl\|CDD\|372412	pfam12965, DUF3854, Domain of unknown function (DUF3854). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is likely to be related to the Toprim domain.	1.15298e-22
NC_019731.1\|WP_041623968.1\|1694_2348_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.82709e-33
NC_019731.1\|WP_015179817.1\|25246_26065_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	9.31555e-30
NC_019731.1\|WP_015179816.1\|22449_24246_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.99177e-126
NC_019731.1\|WP_083888267.1\|24345_25149_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|366523	pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease.	1.37472e-24
NC_019731.1\|WP_015179815.1\|12842_21833_+\|DUF4114-domain-containing-protein	gnl\|CDD\|379190	pfam13448, DUF4114, Domain of unknown function (DUF4114). This is a repeated domain that is found towards the C-terminal of many different types of bacterial proteins. There are highly conserved glutamate and aspartate residues suggesting that this domain might carry enzymic activity.	4.06001e-19
NC_019731.1\|WP_015179818.1\|26197_26995_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	8.44771e-30

>NC_019731.1|WP_190274483.1|7874_8189_+|hypothetical-protein
MQRLPLLVEAGYGCSLSVASNGFAIANLTFTRRNKNNAPHECGNPKCKAIALLLAIGRTIPSPSSTSAGCFACKQEGKARSRWASSVDTQQHQLEYVVRCLAPS
>NC_019731.1|WP_190274482.1|7066_7213_+|hypothetical-protein
MKTFVEFQQTYLFATRTVERSRHQSHHEQPRASNIAGETRNRHRKPKT
>NC_019731.1|WP_015179808.1|3582_6966_+|DUF3854-domain-containing-protein
MNVVANQFLSTTTYLCPKHKSHIESRGLLNNWSYANCRTVSADEASVYLGYTAKSSGILFVGKTTQFQFRPDKPWKSESCKKAPKYRTPVGEYDAFLPQHPTDKNYWDTENLKQHCYRINDHPCIVLTEGPFKGIAGCANDIPTIALLGVSMGLTSKKGDIQGKRYLVETLEKYARAGFGFIFAFDADAATNPNVTWEQRKLGLQLLKFDVPVYSATGGWDAGTEGETKGMDDLIQRKSIEAFRKVLATSVTFKDWESKTFGGDGGSGGTRDRYLVPKSTTFEVHCLKNLFGDDWIVVNDAFYQWNGRYWQFQDEADVNKLIGDFTENCYETAEVGKKFKFGTNKFLDSAFKYCRKVLHQKVDTSRNHLKSFSNGTVDLRTGELFPHDKKHYLLSCSPCDYVPGSECPAEFKQFILSAYGVEQIEVIRAVTSMYLDPTAPYGKFAYLIGDSGSGKGVMLRTWANLLGEENSVSSNSLTELTKPEGRHQLLTGKSLFYIPDAGGFLSGLKAFYELVDNGGISGRALFSASAYQKKWNVRFAIASVEHIQTENSGDGWDRRCIPLQTRARTASIEDPELGRKLSAELGEIAGWALSMDKTERDRILLVPSTNPSIVALKQDGAILGDSVRSFVDRCLRSGGDSYVGSDLHSWYAAYCKAHNLSPSGYNKFVHHLQRVLSNHWKASEVVREGDKIKRIPAQWRGLQILPCFVDVAVAEDEGGSNRPHIPNWACIKTICADGGLQELAQTRTVTHISAIAEIPAHSQIAQTVVVTDVTSNSEIVTTSKNPTTRMVTDVTALQEKSSQYEKTSSYEITDDLNNTAEGESLTDVTPVTTTVTPTFESSAQSCNSSKTCNNPQLSEPGTIAPEESKPTEPTEPTEPPSVPMVNWNVGERVKVSTQYPGAQEYIDERATVVKVWSDGLCRIELDREISVIGGKPTKQFNLNGRYLVSESATDSNLNEEELELVNLMRFAVTQSDPLVTDTVKKCLTETCDKGFANRKKVWFALTVSERTVFKALLAKLEAQPQPKQLPHTPALGESEPKTLSAPIELSKREWEQPTTEPVTQGEPILTPTPEQSFVPHAPLESEPEPELPIFTADTEAHQLDLLPDFKPLSDSDRRFSPESEDWA
>NC_019731.1|WP_015179807.1|2802_3324_+|hypothetical-protein
MTSLEQMVPTEELELYDPLASKSTLSLYLVKEGEKWVPIESKELVIGKQLTRLLQLSHDSRPLLKRKVKLGERLTYHVKKEGSPWKAYLVTPSDWVVVRVFRYEADLSEVEGEMPEFRDVQIAYCERQPLTPEEAEAMTYEIVSQVSVDSFGGDKEAYQQFFASQQSKQYVRV
>NC_019731.1|WP_015179806.1|2565_2799_+|hypothetical-protein
MIGWPFSKSEDDGSDEENRHWASSEEDCKAMQKKYGWELKRVEHHDGDSDSGVDCVFKGKQTSFWDMWVDHQDYKEE
>NC_019731.1|WP_041623968.1|1694_2348_+|Uma2-family-endonuclease
MIQTQTIPQTIPKTVTFDEFAAWYPENSIRRYELHHGVIVEMPLGTGNHSNVTGFIWGEINFEIRRLQLPYSIPGDCLLKPIRNEAGYQPDTIVLNQTAFASEPRWEKESIITMGSSVRLAVEVVSTNWRDDYHLKFADYEEMGIPEYWIVDYLGLGGRKFIGTPKQPTLSVCQLVDGEYQVKQFRGSDTVESLAFPELRLTAELIFRAGLPPTEPS
>NC_019731.1|WP_015179804.1|1016_1181_+|hypothetical-protein
MCWLESSERLRFLRSKAFKALAGDGYTPQISEIEPAGEQLRGQARINALPLAGE
>NC_019731.1|WP_015179803.1|219_486_+|hypothetical-protein
MKQWREKLRSLVLATVPAKKEDPGYAALRGHIPKSLYKRFKMFCLERGVDNSQGLEDLIHEYFELKDQQEQEVYIPKTAESNTFNSSG
>NC_019731.1|WP_015179812.1|9717_10227_+|hypothetical-protein
MLKPQDILAILKVHSWDSTNWTYSSLAQSLGMSASEVHAALERSEAAGLYYGSERKILKQAVLEFLVHGLRYVFYAQPGPLSRGLPTAHSAEPLKSKLVASPSEVYVWPDPQGVVRGQAIAPLYRSVPQAASNDPKLYALLSLIDAIRVGRVREQRLAASELEKRIVAL
>NC_019731.1|WP_015179813.1|10223_10910_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MNQQIFMLEIVARVLSQVRTTIVFTGGATISLYLDEAAAPDIRPTDDVDCVVSIASRAEYYQLSELLKTIGLLESTESGAPLCRWHYEEISIDVMPCDSSVLGFSNRWYRPGIANSIRYQLPSGRQILIFSTPYLLASKIEAFIGRGGGNFYFSSDIEDIVALLDGRSSLFEEVQQADYEVKAFLSGWFRAELENLCEIAPAFLSSAAKNSGRTRLLLQRIERLAIVV
>NC_019731.1|WP_015179814.1|11483_11783_+|hypothetical-protein
MSRRLIFTRSSAVPIAHIAQAVVVATFVEAIDADNCHNSRCGGGCRRGRICPVQTALLYCSSTSVNAPSVVRGSTLLSLPKNSDSQISQIPLSEESVCS
>NC_019731.1|WP_015179815.1|12842_21833_+|DUF4114-domain-containing-protein
MPLTDPIGEPLIEVESLIPGLAPTFAPQLPGIPTHKTLLYQTPGSSENSEQPNLIETAKPPQSEFSRAETDAFITNKASDIHSISSATISELRTNSNPRDAANSEIDPLIGKFDSDSGDSLTNPNPITSPVITTSTTSEKASPKTQLPATPETSSKPEDIKTPLSSEATLKSESEPNKTSPATASNIIPDRSTTSSEKSETIAVTNLTETIAASPNIPSTDKTSTDKQSPVAKADDKIDSDKQSQNSTIVEKTNSGEPSRTAEVSDKIDSDKTAPIPSTSETKNSDKQLPLAEASTLIDSDKKSPTVDAIPTEKPSSNSQEPLTTQPPTAPLIPPASNPVLPDTNINPEVNSTDSTNPVQTASQALTDKQNDSEKVDPLKTEPAAIPKTAASENVAVTTATAVQTPEKSPNNTDSVSELKQPVQTESIVNQSADAESIKTDQTATASISQPPAETESVIAPLASQSPAKTDSLVSNVGEQSPKETHSNVSTASEELPTKNKSIITAEINSGTVVLDIPVAQITGELETEQLPTKNESIIAVPEADDTVEHNIPVAEITAELETEQFPTKTDSLAPAEFTAGTIKLDITVAFIAKLETDQTPAITVNSLESDSLISNSNQHIQTDNSIPALFSNPSETTAGTALIAEVETTVAPSTLKSPPEPTSNNYNSNSNPIETVAVLPADSDAKIAPQRADITSGLLPLEAEKSAQLSDNIADTQPNSTQSTGNFQTNTNPQINLSITSAANSPIPGTFLVDNQGKVRFDYVFDGGGYEGELGIFSLAGMSAFIPGTPEFIAEASRRVLSNSTDGHIVISDSIEGAKFTGAMPFDGDWGSGEYQGIKTFNMTPGDTFAVMLVPNATIQSSLQSSYSGNWFPSHRPLFSIATANPNDTAHLLQIADVTGTGNTFALEDMSPPNSDRDYNDLIFKISGATGNAPLLDTVINPDREWRNTTLGQQLLAEANPPNSDNNPPVVSPTSTRTYTELETTISLDNLATDAEGDPLTISVQGPVNGTVIFNPLTNKASFKPATGFSGIASFDFLASDAFGSSTPARVTVNVSDVPLLNLDFVKRNPSLNAGENTELIVLGDFADQKGVVLPDSYLTYTSINPEVAPIDAAGKVTGLTNGTSILSASRNNLQAVTPIRIGTMPAPTTDAQLHQILAELYGLDPYPDAVSLSVGATRKLSLGLNSNFTEANLTAASTGTRYFSNNSNILNVSPDGTITAVGIGDGTVTAIHGTASAIIPVRVEAPQIGTTALGTDGGIINSNDGTLAVMIPPGALEQNTTVSIAPVNQQNLSLPLPPGFEFAGAFNLNFSDNSLNIPAQLAVPAPEGLAPGTQAYFLRKGAIPDATGTWNPIWLQEESGIVGDDGNIRTQSPPYPGVVRPGEYAVVYASPTGSATLVKGQLTLNYNFPLAFFGIIDPQGNLGQLINPDKFVTTPAFTVTRDISSVQVVAIPKVGLPVVTEVGVQRNDDGTATFKAALNMPAPTTSDPTTPPVLQKAELKFKDDSGQPFENNEPLLFLTGGNILVNNASDSKGSKFEDLTVKFSFGNSMYEGTVVPTRSRSLGGNQYEVAVKVPDTLPLGASGVVLERKQNQIVEQKGVTPVYKEIQYNSNPIRLPQGAEYVFAALGGSDRVAVLNGKNPESVVDTTNSKDLLLAQIPVGTSGVTDWAESTAVTSDGNRVYATLRNSGQVALVDPMVLRQVDTQLNTPGVNPMVLPAGARPKSIVISPRDDYAYIGDLNQAKIYVLDINPNSATYHKVVETINVTSPLGLSQLAISSDGRRLFGTGSDNNEQVPNRRIYAINIDSKDRPKDEDSNPRKWHQQIGVIPTISETEGIAATNEPTKMVFTNGLNLINTDQNDGPGFGVLEITSDDPLNFTASVSYAPLSLGFPTDYFDVNEGVSVTVTRDGRYGFVAGRNSGSLGPNADVRSGGNIGIIKDPLGPNPQLIGATRPIPEALTNDLVLSNDNKYLYGSYPSLTGSGSVYAFDVEEMIKTLDNPGQFKIDSLDRGVKSPFFNATTARSVTAVDFTRVPIDDINPAISIAADYGILQENRPANQFTYGVPLGTTRAPVGTGGNLRDLSSAPTDWLDLKGPGATTSDLTPTFQWQFAPGWEDVKEVNLFVSTFDKGEGLLPWDKVVDLSDSALLPGFSETQKRQLLSKPWNGYDDFNPNRILTATWKKDTGKWYGHDGITPLDQPLNDPANTSTNFTLPRSLTAGQNYNFAVEAVSNSGAVTKDLGQFQTIPPVSNSPFSSVSVLTHGFTLLPNQSGIPDSFFQMANKIATVSGNTPENSGLIMRYDKPTGNWIPIDLQGRVITDLTEGLKTSETAYLSTLANNLKAGVFIDGKEIKYLNNNKPLVLLTEWSLDRESVIPDVGFSEGAADALFASMVQLDLALGGKVGEYENNQLQRLYDSQGKLIRQQGDLFNSPMHFMGFSRGTVVNSEIVQRLGTFFPQAGGKSMADRDLQMTTIDPHDFYQPSLNLQLPNFISTNFSDFYEPKVQVWNNVTWADNYYQTVADPNGGTATPNGRSLSQLPQEELNKNPKPAGLNFPKATNGDTLGKADREILLGTREGEPGRINSRIGFTKDDGIGGTHKRAFGWYAGTVDLDLEEVLLQYPHVEASENPQAVNDMLGKMGLPEMFDPNFPAAKPWYDNGNGEGVGEGWFYSVLGGGKEQRTFSSVGRVPVSFDNTLSAGMRGDYAVPTLFNGNFDQFIPNKSDAENLGRNTISQEIPGWSFHNSATSKLADPTKHLVDWKAIASLNIPYTYPNGKQVPGTSFLERMGINSDPDFSNYALELKGGDSITHNRFVVPDWGALRFNIHVPKEAADRGNRLKVTLTDTASGEEITESILLNEANFTTGTSDSFYNNDLAKDAARKLGYATRGFETFNVFDTFYEGSSQQKELDKFRGKTAMLKFELEGSEAVYLDDVFFKSSSLRFGEPTPKDGSSPARYSGAAYDGNLYKDNLLIEKPQYSAIRSVETEKLGDDWLLQGNP
>NC_019731.1|WP_015179816.1|22449_24246_+|group-II-intron-reverse-transcriptase/maturase
MYEWNDINWRKLERNVFKLQKRIYQASNRGDVKLVRRLQKLLISSWAAKALSVRRVTQDNQGKKTAGVDGVKSLTPKQRLALIDKISLGSKVKPTRRVWIPKPGTDEERPLGIPTMEDRALQALVKLVLEPEWEARFEPNSYGFRPGRSCHDAIGAIFSAVSQKSKYVLDADISKCFDRINHDVLLSKLNTYPTLRRQIRAWLKAGVMDGNKLFPTDEGTPQGGVISPLLANVALHGIEELIMGLAPKFEMRDSRGHTYGLRDKIKSISLIRYADDFVVLHEDVEVVKLCKVEIEKWLSDIGLELKPSKTRLAHTLNKLDDEKPGFNFLGFNIRQFPVGKHNSSKGTRGTLLGFKTIISPSKESQKRHYRKVAEVINKSRGLNQATLIKNLNPIIRGWCNYFSTVVSKKIFDRLWHLVVWKLLKWGRHRHRNKGRGWTRLKYFKTVEGNNWVFATGEGNNPLKLIQHSSTEIKRYVKVKGMASPYDGDWIYWSSRMGVHPEIPVRVAKLLKRQKGKCAHCDNYFKDGDSIEVDHIAPKSKGGKESYDNWQLLHRHCHDTKTANDGSLGNKSSCKSAKPKPPVEPSLWAWENDMLVMTY
>NC_019731.1|WP_083888267.1|24345_25149_+|DNA/RNA-non-specific-endonuclease
MSYNGTGNIPNWASFQIDKSSIYLPGEPNPTERSFIIDKSLPPNFNRVSSNDYDSAVPLGYVQGHQTPLAARSITIKDKRAVNLMTNIVPQQKEHNSTNLWEKFENYGQDFALNGKEVYVINGIDGIKDSFDAGGKAIQIPANLWKVMLVLDKPDADPSTTPAYAVGFYYPNQDPGNVATKWRNKDWSKIEDRTQRPIWSLEEIENQIGYNLFPLLPQEIKQEIKDVKYIFPSRKSIEKTWGSLPWKSNPPPPPEDPTDPEEESESE
>NC_019731.1|WP_015179817.1|25246_26065_-|pentapeptide-repeat-containing-protein
MNAEELLRRYAAGERDFAGVDLSGVDLNKAHLIDIDLSNANLINANFSYADLINANFSGANLSNANLNCIDLSDANLNNANLSDANLGGAQLINANLSGANLREAFFGGADLSKANLSSACLQNANLDSADLTDANLSGANLKNGCLCGIHCENTNLNGADLSNSDITEAGFYEATLIGTNLSNTMLHQTGFENSDLTGANFSGAIMDETSFDGSNLSHANLMGVQPEPSLMAKKVRLMGKGFEEAILCKTIMPDGSIRNDNCMPEQSNELI
>NC_019731.1|WP_015179818.1|26197_26995_-|pentapeptide-repeat-containing-protein
MNAEELLRRYASGDRDFAEVDLSNVDLNKANLLDINLANANLINANLSYADLSGADLSNANSTNANLRCIDLINANLSNANLSEANLDGAQLINANFSDANLKGAWLEGADLSGANLSNACLENATLHYADATDANLSGANLKNGFLSRLNCENTNLTGADLSDADLGEAGFYEATLIGTNLSNTMLHQTGFENSDLTGANFSGAIMDETSFDGSNLSHANLMGVQPEPSLMAKKVRLMGKGFEEAILCKTIMPDGSVRNDNCTA
>NC_019731.1|WP_015179819.1|27095_30758_+|DNA/RNA-non-specific-endonuclease
MKEVNLFVSTFEQGKGLLPWDKVVDLSDSALLPGFSETQKRELLSKPWNGYDDFNPNRILTATWKKDTNKWYGHDGITPLDQPLNDPANTSTNFTLPQSLTAGQNYNFAVESVSNSGAVTKDFGQFKTLPPVSNSPFSSVSVLTHGFTLLPNQSGIPDSFFQMANKIATVSGNTPENSGLIMRYDKPTGNWIPIDLQGRVITDLTEGLKTSETAYLSTLANNLKAGVFIDGKEIKYLNNNKPLVLLTEWSLDRESVIPDVGFSEGAADALFASMVQLDLALGGKVGEYENNQLQRLYDSQGNLIRQQGDLFNSPMHFMGFSRGTVVNSEIVQRLGTFFPQAGGTSMANRDLQMTTIDPHDFYQPSLNLRLPGFIETNFSDFYEPKIQVWNNVTFADNYYQTVADPNGGTATPNGRSLSQLPQEELDKNPKPAGLNFPKASGDTLGKADREILLGTRNGEPDRINSRIGFTKDDSIGGTHKRAFGWYAGTVDLDLEEVLLQYPHVEASENPQAVNDMLGKMGLPEMFDPNFPAAKPWYDNGNGEGVGEGWFYSVLGGGKEQRQYSPTGRVPVSFDNTLSAGMRGDYAVPTLFNGNFDQFIPNKSVAEDFGRNAISQVLPGWSFHNNSPQVTQGSTSNLLTVENLVDWRQVGSLQKHREKLGYDGSRPNYALELGSDESITHNRFVVPDWGVLRFDLHVPNPGNGKLKVFIKEANADGWTELNSVDLSLADDPHTLNPNDNNQYVRKNAIGYYDFKDGQYSDPYSYKLSYAREGFETFHLDVPNHLRGKPALLKFELEGNSLVYLDDVFFKSAHLKLDNPDNARPDASKNTNNYLIERPQYSLSYNNETKGANWVSWQLNKAWLGDVRRQRITGEPNNPDHPYVEQVPIVSYGNSYGRNYPPGFDDGGLDSNFPQSPDQVRPVDATFSPYDINNGNVVVYPWVPDGLLPANWVRTQGGDYRNNTLYVPGGFVQFADRRYEKGHLAPIEDRTRTFKDALSTYMTSNLLPFQHYVNKTPWKNFEEESNKFVQGNNAELYIIAGATGYNLDRKLPDPYPTEHPFQSHPDPLPGVVKNLVSLREQNGELIFDRDPLGRIRTRNGGNEGINFQWLTNPKQIGIPEFFWKVVVPLRPGQGIADLNEDTQPIAVIMPNIDARKFPDNQLILGNDTTLDLSRPGVWETYAVTVRDVEHLTGYNFFSGLPQELQDAIEEDRNTNFFLNPSP
>NC_019731.1|WP_015179820.1|30884_31496_-|pentapeptide-repeat-containing-protein
MTDITAEHLLSSYAAGKRYFSRANLSGIDLSGANLPGIDFECSNLSGANLSGANLSGASLRESILHEVNLERANLSDAKLIRVESHNANWRRVYLDGANLQNAYLKSVDLEGATFRGAQLNRITFSECNMRNINLEGAIWNDSNGGGIWNVDLTGAIGFDPDDIAGNNVILPDGEFLKDAWEFIKRNGKLDRPRRLNQPSDFD

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Crispr_ID: NC_019731_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019731_2

97369-97461

TypeV-U4

Consensus_repeat	Method
CACTTGCTCAACTTGATTTTTAATTCAATT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_019731_2

>merge|NC_019731|2|97369-97461|CRISPRCasFinder
CACTTGCTCAACTTGATTTTTAATTCAATTTAGATAACGGCTACTGTGTTGCCAATTTTCTCACACTTGCTCAACTTGATTTTTAATTCAATT

>NC_019731|2|2|97369-97461|CRISPRCasFinder
CACTTGCTCAACTTGATTTTTAATTCAATT	TAGATAACGGCTACTGTGTTGCCAATTTTCTCA
CACTTGCTCAACTTGATTTTTAATTCAATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019731.1\|WP_015179863.1\|90285_90921_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019731.1\|WP_015179872.1\|112269_114510_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|224777
NC_019731.1\|WP_190274479.1\|99658_99829_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179873.1\|114543_115503_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019731.1\|WP_015179861.1\|89300_89540_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_019731.1\|WP_015179866.1\|97809_98160_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179864.1\|91371_91602_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_150111768.1\|90040_90223_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_190274477.1\|88511_89132_-\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015175249.1\|96071_97214_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_019731.1\|WP_150111773.1\|115593_117618_+\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|224777
NC_019731.1\|WP_015179867.1\|99864_100374_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179875.1\|117763_118714_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019731.1\|WP_015179862.1\|89572_90016_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_190274478.1\|95342_95501_-\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179868.1\|100370_101057_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179814.1\|101629_101929_+\|hypothetical-protein	unknown	unknown	unknown
NC_019731.1\|WP_015179865.1\|91981_95104_+\|DUF3854-domain-containing-protein	unknown	unknown	gnl\|CDD\|225913
NC_019731.1\|WP_071884050.1\|95754_95865_+\|Tn3-family-transposase	unknown	unknown	gnl\|CDD\|376561
NC_019731.1\|WP_015179871.1\|111931_112117_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019731.1\|WP_015179872.1\|112269_114510_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|224777	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism].	9.0041e-24
NC_019731.1\|WP_015179875.1\|117763_118714_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.51672e-18
NC_019731.1\|WP_015179873.1\|114543_115503_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.09972e-26
NC_019731.1\|WP_015179861.1\|89300_89540_+\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	6.83536e-06
NC_019731.1\|WP_071884050.1\|95754_95865_+\|Tn3-family-transposase	gnl\|CDD\|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	3.78282e-07
NC_019731.1\|WP_015179865.1\|91981_95104_+\|DUF3854-domain-containing-protein	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	4.70558e-24
NC_019731.1\|WP_015179863.1\|90285_90921_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	5.6369e-34
NC_019731.1\|WP_015175249.1\|96071_97214_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.61002e-53
NC_019731.1\|WP_150111773.1\|115593_117618_+\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|224777	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism].	2.22988e-21

>NC_019731.1|WP_015175249.1|96071_97214_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKARYQYRIYPTHQQQQSLAQLFGCCRVVWNDALALCKQFEKKPSSAELQKIVITQAKKTEERAWLSEVSNIPLQQSLADLETAFQNFFNSCKGKRKGRKVQYPKLKKRTNRQSARFRMGGFSFKNGGVYLAKIGIVNPVWSRNLPSEPSSVTVIKDCANRYFLSFVVEVQPIQVEAKNPSIGIDLGIKTFAVMSNSEKAESPSYKKLDRKVRKLQRKLARQPKDSKRRNITRIKLATLHNRITDTRKDFLHKLSTKIVNENQVIILEDLNVSGMLKNRKLSRAISQQGWREFRTLCESKSEKFGREFQVISRWEPTSQVCADCGFKWGKIDLSIRSVVCMSCGTEQDRDENAAKIIEKVGMGNRHDSKRAQRVCQASNG
>NC_019731.1|WP_071884050.1|95754_95865_+|Tn3-family-transposase
MGQALRIMFLLEYISDRSLRQEITACTHNVENYNRH
>NC_019731.1|WP_190274478.1|95342_95501_-|hypothetical-protein
MSARKSQVCDRKNIACYQERTAITSPNRSRHEQHKKAVIWQEIAGGKQDIFR
>NC_019731.1|WP_015179865.1|91981_95104_+|DUF3854-domain-containing-protein
MSTTQSTQESQELDTAQSTPDLKGLGTLCSIDKKSLTPEHEAHISGRGLLNDWVRACCHSASIAQASHYLGYSVKSPGILFMGKDGQVQYRPDIREPKRGKKEPPKYLSPSGEFDAFLPPSPDNPLYWEIEALKREAFYINGVPYILITEGVFKALAGCSNGIPTISLLGVEQGLTGKARDPENQRFLVPALRKLAEAGFGFIIGFDADAATNPNVRAAEKKLAKQLAKFNVPVRSVTGAWAAASVIESGEVKNTKGMDDFIQHKGIEEFRAILTKAKLFGEKESDTEGEKKEKAVTSEIIGDELAEDLRDQLLYSSSHKSWMKYSLEFPGVWTQVADDYVRHIVHNLCRARGVMPNNNFIKNVLGWLQRTLFEFKWLERPSNELLPFEDGILNLLTNEWHEHAPGFRLTWVLPRKYQGSAVHAGWKRIEIWLDQATRGNKRMKDELLAFCAATLRGMSGLQKFLIGTGYGGTGKGTYTQLVTLLVGEQNVWVGKLEDLTKQDKIAELQTKRLAIFDDQEKYTGNLSNFRSMTGGALINGRNLYERSVTFRFPGLALITANQPCFPASALSWLKRRIIQHEFAYTPTKRNRNLVREFEPEISAFTKYLLSIPVAEIERILDPEDQSINGTFWEDRVRADPMAAWLNELVIHDAEAKTAVGADKNEWKDATYVPTNSTLFGSYNHYCTGGGYSAKGKNNFSADLVELCREVLGWKDVSKERAAVGVVIKGLRLRTDTDKGIATVEELLEQKNVDLGQHCVDLNVDLEPLPHKDYVDHVDLTSRSAEKNENTSADSNLILGAGTDSASLDQVTITADAIETLPPPKVYTVYTSHTEQDIQPSQGLHSGLHSGLHSGQHNPEPETAPTPPTAQPAQPIAPSDLKPKSEQAISDADAETIRKLSAQQPTSTLSTGSSQSKLLLLQDYARRIGEALGYQSPATAKAIAEYIQESIVNQDITESELAEVAGIENWQAFTALRNLTENEKNLVEIVQQAIASNDAETAKDVLISLKEVCDSGAADRQKVWNSGLTESEREAFSALIQ
>NC_019731.1|WP_015179864.1|91371_91602_+|hypothetical-protein
MLYSENKVQVAVWLQPEVVANCDTYAEYFSLSCSGFINEALKLYIRHAAEKHCQLLAENGENGTNSHEHNEEALAA
>NC_019731.1|WP_015179863.1|90285_90921_+|Uma2-family-endonuclease
MIQTQTKTVTFDEFAAWYPENSVRRYELHKGVIVEMPLGTGPHSRVTGFTRDEISAEIRRLKLPYFIPGDCLLKPIRDEAGYQPDVIVLDQVALANEPRWDRESIITMGSSVRLAVEVVSTNWQDDYHFKFADYEKLGIPEYWVVDYAAKGGRRFVGNPKQPTLSVYQLVDGEYQISQFRGDDLIESLTFPQLKLTAEQIFRAGLPPTEPS
>NC_019731.1|WP_150111768.1|90040_90223_+|hypothetical-protein
MGNLGAIAIGSWGGADDRLLNKAWYKLPIAHPNRSQQNRSPQHPSQRQQRKPSGVRLVNV
>NC_019731.1|WP_015179862.1|89572_90016_+|hypothetical-protein
MNSSDRLDRIEAILAATAVQQQANTAAIDRLTDRIDRIAVQQQANTEAIGRLSVQTSANTAAIDRLTERVDNIAVQQQASTELLDRLVDRVDRIVSVIQDHQGALRLLQQQQNEWREQMRIIQTEIRDLWQYLNNQLRNRGNGGGQN
>NC_019731.1|WP_015179861.1|89300_89540_+|hypothetical-protein
MGVTKKAKITFTCEPSLKDGLEEWAQSESRTLSNLIEMLIRQAYEERFSSADRPPDPQPTEPEPTAATAKRGKASKGAS
>NC_019731.1|WP_190274477.1|88511_89132_-|hypothetical-protein
MMESENLAVIDVEAELSIDSEPEDAEEWYSAQQIQGLLRLSKAGLQQSISKLQSIYRLDIKTLRRGAARATQYSELALKACKLLNAGKLSELRKLVEATPTASPASQVSTLTISEYTPALDRRIAELNQTATSNSASLNQNVMQLLAQIATENQAAQQRDTDLDNAEINAAQNRGATRALAVFQAEQKAQAEVLAQLRAMKLGAES
>NC_019731.1|WP_015179866.1|97809_98160_+|hypothetical-protein
MGNPRCQGDRALASYRTNDSLAILDISRLLRLQTGGQGAIALGVLRRYSTAPTRIRRAMLGSIVKAAVLYTNRLAPDFKSDWQEHSSILVQTAPSNFLALAVVVCDRASPAYQQFS
>NC_019731.1|WP_190274479.1|99658_99829_+|hypothetical-protein
MAKFSETYSAIAPTYNSFKQPGRALYSQLMAIALQRAPRSQLKSPYLDYSLFANVE
>NC_019731.1|WP_015179867.1|99864_100374_+|hypothetical-protein
MLKPQDILAILKVHSWDSTNWTYSSLAQSLGMSASEVHAALERSEAAGLYYGSERKILKQAVLEFLVHGLRYVFYAQPGPLSRGLPTAHSAEPLKSKLVASPSEVYVWPDPQGIVRGQAIAPLYRSVPQAASNDPKLYALLSLIDAIRVGRVREQRLAASELEKRIVAL
>NC_019731.1|WP_015179868.1|100370_101057_+|hypothetical-protein
MNPQILMLEIVARVLSQVRTTIVFTGGATISLYLDEVAAPDIRPTDDVDCVVEITSRAEYYNFSNLLRTLGLQESTESGAPLCRWQYEGISIDVMPCDSSVLGFSNRWYRPGIANSIRYQLPSGRQILIFSTPYLLASKIEAFMGRGGGNFYFSSDIEDIVALVDGRSSLFKEVQQADYEVKAFLSGWFRAELENLCSIAPAFLSPVAKNSGRTRLLLQRIERLAMVV
>NC_019731.1|WP_015179814.1|101629_101929_+|hypothetical-protein
MSRRLIFTRSSAVPIAHIAQAVVVATFVEAIDADNCHNSRCGGGCRRGRICPVQTALLYCSSTSVNAPSVVRGSTLLSLPKNSDSQISQIPLSEESVCS
>NC_019731.1|WP_015179871.1|111931_112117_+|hypothetical-protein
MAEYAGCRGCRHYLRVYINGIPTCRAFPEGIPPIIIVGKEHTKPLPDQDNTIVYEPAEAAK
>NC_019731.1|WP_015179872.1|112269_114510_+|DNA/RNA-non-specific-endonuclease
MTTIDPYDYDDNSFSGPFLNIQDPEIKVWNNVTYADNYYQTNGIGNTINGRELSGTNWKSDWNVSLNNLAGFTPDDGEGASHRAALAWYAGTANLNESQFPSENGETIYRRLGDLEQNNIADVTKTWYTPEHTNASFTQGDTKAPWEGIGTGWFDSVLGGGSQLRPYFDGGKKTKNELGDFEDYLKKNRVSVYEDNTYTDRMRGDYAVPTLFNGNFDAVAGRKSAQTIPGWSLFNGSSEDVLQSHLVDWYTIGEEVAKNRANTPGLKDLIGSGYLDAISYDVARPNFALRMGVGGTKKIVHNYFVMPEWGDLRFNLHAPFQNRGGKLKVWLETTPKTDSQGQPIIGTGSHLLKEINLSADPENKLETYASDIDKIGFGRGGFETFHVDSSKLDQFRGQSAKLRFEVEGDTRVYLDDVFFKSSHLEFGNPSEARYSPEEPNNNPYRENLLLEKPQYTASYNRTTKTPNWVSWQVNKSWIGGQRQADDFIADPTLPNGWPQISGSNYENNNGLSLGFNKGHIIPSGDRTRYPKDNIATFLGTNLIPQNADNNLFFSAPNNPAEASAWYNIEQLVTGLAESSKQVYVVAGTYGTNWEPQKKSNALPNDSRYQGLTNSEAFRQQGINIPTWTWKKNLVLEHPSQGVPDVNRNTKIYTFLTPNRAEPSALDWANAGEQGIVHPFYEIGERLQLNRVLSPIKNVTEWRDPNTWLVSLEELENLLKGKNIKLFSNIPGDIRDSLKQNINLPRP
>NC_019731.1|WP_015179873.1|114543_115503_-|pentapeptide-repeat-containing-protein
MNSEEYLEGEEETEKFMPLLSLYEHHPEMEGPEVVNLYKDGWRDFSGMNLEGIVVQGEYLIDIDLSGSDLHSSIFQGCDLSGANLSDTNLENANLRSTCLVEANFSKANLTNAQLKYADLSGANLENTNLNNVSLAETNLTGTNFVSAQWQNIDTESALFCHTIMPDGSYKSDPVRVLETQELLRRYAAGERRFEGIVLYRADLRGVDLPNIIMPSAHFANANLSGVNFQESCLKRVNFRGANLSGANLCIANLRGANLSYTNLKDANLYAEMYGVDFTEANLSGAELLFTESAFFRNTTLPNGEVIIGPSEYASNWKR
>NC_019731.1|WP_150111773.1|115593_117618_+|DNA/RNA-non-specific-endonuclease
MQPHKLYNSGFNVSLNNLAGFTPDDGEGASHRAALAWYAGTANLNESQFPSENGETIYRRLGDLEQNNIADVTKTWYTPEHTNASFTQGDTKAPWEGIGTGWFDSVLGGGSEFRPYDLDGYKFSLDEIQEFGYPNGWKNYLEGKRVSVTEDNTPIPAMRGDFAVPTLFNGNFDAIAAKLDSQPLPGWSLYNGDDKSVLQRSLVNAIGSNSGSTNYALALKSDESITHNPFVVPDWGNLRFDVHAPVASGKLRVTLETIDGNFKETNEIDLGKGLQIPNSMTDVSQVTSAYLNNLNAVGFGRNGFETFQMNLPTNNDVTKQYRGQPATLKFELEGGESVYLDNVFFKSDSLNFGNPTEARWNIDEPAQNPYQTNLLLEKPQYTSSYNAVTGLPNWVSWQVDNTWSQRFVGRTGDQFIVDPDLPNNPNFPTWSRIDGTMYQGSGLDKGHLVPDKDRNRNQKDALATYMSTNLIPQAIDNNRLFRNNPDISPAWSRIESKLVEQLIFDYNKKLDITAGVFDTKPQNWSIQPKTRAPEALTEAQNQGNTNPTNLEANGIRIPGWTWKTILVSNKSNLGVQDILGSYTYITPNIPEPYTDWNGQPAVPNPLNQLLGENREPITSAEQWRTPSTWKISINQLENLLNAQGSDKVFNFLSNLPEDVRNRIKQQSDFQFPPP
>NC_019731.1|WP_015179875.1|117763_118714_-|pentapeptide-repeat-containing-protein
MSLQEIAKGRIAGADMIQQYRAGERNFTGIDLKYARLQWPCFIDINLSQADLRWVDFEIGRTRLINANMSDANMEKVSLVSAFMLNANLRGANLRNANLTNADLTNADLTNADLTNADLSGTELIGANLTKANITDIKTTKDTIFCQTIMPNGQVQTDSHRLTDVGEFLRLYDEGEREFRNLVLHEVDLSNVTLSGVNFLWQTRFSHVNLVGANLTDCNFGGIKRIIFSDLKNTHLINCEWRNPQIIYCDLRGAYLGLADMYAPEFTGSNLEGIQNLFGAEADVYFCNTTWVTGEFIPGPINATEHWRGEIRENEF

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_019731_1	1.1\|8902\|49\|NC_019731\|CRISPRCasFinder	8902-8950	49	NC_019731.1	98707-98755	0	1.0

1. spacer 1.1|8902|49|NC_019731|CRISPRCasFinder matches to position: 98707-98755, mismatch: 0, identity: 1.0

attcaactgttccgataaatgccatcgatgctatgttagcccagtgtgc	CRISPR spacer
attcaactgttccgataaatgccatcgatgctatgttagcccagtgtgc	Protospacer
*************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019731_1	1.1\|8902\|49\|NC_019731\|CRISPRCasFinder	8902-8950	49	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	8902-8950	0	1.0
NC_019731_1	1.1\|8902\|49\|NC_019731\|CRISPRCasFinder	8902-8950	49	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	98707-98755	0	1.0
NC_019731_2	2.1\|97399\|33\|NC_019731\|CRISPRCasFinder	97399-97431	33	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	97399-97431	0	1.0
NC_019731_2	2.1\|97399\|33\|NC_019731\|CRISPRCasFinder	97399-97431	33	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	120489-120521	4	0.879
NC_019731_2	2.1\|97399\|33\|NC_019731\|CRISPRCasFinder	97399-97431	33	NZ_CP035565	Lactobacillus paracasei strain SRCM103299 plasmid unnamed2	23235-23267	7	0.788
NC_019731_2	2.1\|97399\|33\|NC_019731\|CRISPRCasFinder	97399-97431	33	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	28674-28706	7	0.788
NC_019731_2	2.1\|97399\|33\|NC_019731\|CRISPRCasFinder	97399-97431	33	NZ_CP039708	Lactobacillus paracasei strain Lp02 plasmid pLp02-1, complete sequence	31343-31375	7	0.788
NC_019731_2	2.1\|97399\|33\|NC_019731\|CRISPRCasFinder	97399-97431	33	NZ_CP014987	Lactobacillus paracasei strain IIA plasmid unnamed2, complete sequence	40876-40908	7	0.788

1. spacer 1.1|8902|49|NC_019731|CRISPRCasFinder matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 0, identity: 1.0

attcaactgttccgataaatgccatcgatgctatgttagcccagtgtgc	CRISPR spacer
attcaactgttccgataaatgccatcgatgctatgttagcccagtgtgc	Protospacer
*************************************************

2. spacer 1.1|8902|49|NC_019731|CRISPRCasFinder matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 0, identity: 1.0

attcaactgttccgataaatgccatcgatgctatgttagcccagtgtgc	CRISPR spacer
attcaactgttccgataaatgccatcgatgctatgttagcccagtgtgc	Protospacer
*************************************************

3. spacer 2.1|97399|33|NC_019731|CRISPRCasFinder matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 0, identity: 1.0

tagataacggctactgtgttgccaattttctca	CRISPR spacer
tagataacggctactgtgttgccaattttctca	Protospacer
*********************************

4. spacer 2.1|97399|33|NC_019731|CRISPRCasFinder matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 4, identity: 0.879

tagataacggctactgtgttgccaattttctca	CRISPR spacer
gacataacggctgctgtggtgccaattttctca	Protospacer
 * *********.***** **************

5. spacer 2.1|97399|33|NC_019731|CRISPRCasFinder matches to NZ_CP035565 (Lactobacillus paracasei strain SRCM103299 plasmid unnamed2) position: , mismatch: 7, identity: 0.788

tagataacggctactgtgttgccaattttctca	CRISPR spacer
tggataacggctacgatgttgccaattacttcg	Protospacer
*.************ .*********** ..**.

6. spacer 2.1|97399|33|NC_019731|CRISPRCasFinder matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 7, identity: 0.788

tagataacggctactgtgttgccaattttctca	CRISPR spacer
tggataacggctacgatgttgccaattacttcg	Protospacer
*.************ .*********** ..**.

7. spacer 2.1|97399|33|NC_019731|CRISPRCasFinder matches to NZ_CP039708 (Lactobacillus paracasei strain Lp02 plasmid pLp02-1, complete sequence) position: , mismatch: 7, identity: 0.788

tagataacggctactgtgttgccaattttctca	CRISPR spacer
tggataacggctacgatgttgccaattacttcg	Protospacer
*.************ .*********** ..**.

8. spacer 2.1|97399|33|NC_019731|CRISPRCasFinder matches to NZ_CP014987 (Lactobacillus paracasei strain IIA plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

tagataacggctactgtgttgccaattttctca	CRISPR spacer
tggataacggctacgatgttgccaattacttcg	Protospacer
*.************ .*********** ..**.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

48182 : 95865

Brevibacillus_phage(33.33%)

transposase,integrase

attL 46526:46541|attR 107109:107124

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
46526:46541	attL	NA	NA	NA	NA
WP_015176254.1\|48182_49679_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_051041648.1\|49664_52178_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_015179830.1\|52785_53679_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_190274484.1\|53667_53859_-	hypothetical protein	NA	NA	NA	NA
WP_015179831.1\|54001_54187_-	hypothetical protein	NA	NA	NA	NA
WP_015179832.1\|54427_55534_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015179835.1\|62854_63763_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015179836.1\|63782_68915_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_015179838.1\|72066_72777_+	hypothetical protein	NA	NA	NA	NA
WP_150111772.1\|74451_74796_-	hypothetical protein	NA	NA	NA	NA
WP_015179840.1\|75358_76342_-\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	1.3e-18	27.9
WP_150111767.1\|76449_76788_-	hypothetical protein	NA	NA	NA	NA
WP_071884064.1\|77055_77406_-\|transposase	transposase	NA	NA	NA	NA
WP_015179842.1\|77724_78447_+	ParA family protein	NA	NA	NA	NA
WP_015179843.1\|78443_78827_+	hypothetical protein	NA	NA	NA	NA
WP_015179846.1\|79789_79990_-	hypothetical protein	NA	NA	NA	NA
WP_015179847.1\|79986_80439_-	hypothetical protein	NA	NA	NA	NA
WP_190274475.1\|80423_80591_+	hypothetical protein	NA	NA	NA	NA
WP_015179848.1\|80728_81313_-	hypothetical protein	NA	NA	NA	NA
WP_015179849.1\|81531_81834_+	hypothetical protein	NA	NA	NA	NA
WP_015179850.1\|81872_82331_+	hypothetical protein	NA	NA	NA	NA
WP_190274476.1\|82459_82639_+	hypothetical protein	NA	NA	NA	NA
WP_083888268.1\|83079_83454_-	transglycosylase SLT domain-containing protein	B5AX77	Iodobacteriophage	1.5e-28	53.1
WP_015179851.1\|83559_84012_-	hypothetical protein	NA	NA	NA	NA
WP_015179852.1\|84004_84265_-	hypothetical protein	NA	NA	NA	NA
WP_015179854.1\|84405_86565_-	hypothetical protein	NA	NA	NA	NA
WP_015179855.1\|86564_87110_-	hypothetical protein	NA	NA	NA	NA
WP_015179856.1\|87123_87849_-	hypothetical protein	NA	NA	NA	NA
WP_015179857.1\|87913_88129_-	hypothetical protein	NA	NA	NA	NA
WP_015179858.1\|88132_88333_-	hypothetical protein	NA	NA	NA	NA
WP_015179859.1\|88338_88515_-	hypothetical protein	NA	NA	NA	NA
WP_190274477.1\|88511_89132_-	hypothetical protein	NA	NA	NA	NA
WP_015179861.1\|89300_89540_+	hypothetical protein	NA	NA	NA	NA
WP_015179862.1\|89572_90016_+	hypothetical protein	NA	NA	NA	NA
WP_150111768.1\|90040_90223_+	hypothetical protein	NA	NA	NA	NA
WP_015179863.1\|90285_90921_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_015179864.1\|91371_91602_+	hypothetical protein	NA	NA	NA	NA
WP_015179865.1\|91981_95104_+	DUF3854 domain-containing protein	A0A0C4K628	Synechococcus_phage	1.9e-31	25.4
WP_190274478.1\|95342_95501_-	hypothetical protein	NA	NA	NA	NA
WP_071884050.1\|95754_95865_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
107109:107124	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_019764

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019764_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019764_1

26887-26969

Orphan

Consensus_repeat	Method
TAGTTTCTGCTCGATCGCTATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019764_1

>merge|NC_019764|1|26887-26969|CRISPRCasFinder
TAGTTTCTGCTCGATCGCTATCTTGAACGTCTTCCGATTCTTCTGAAGGCAAAGGAGGAGTAGTTTCTACTCGATCGCTATCT

>NC_019764|1|1|26887-26969|CRISPRCasFinder
TAGTTTCTGCTCGATCGCTATCT	TGAACGTCTTCCGATTCTTCTGAAGGCAAAGGAGGAG
TAGTTTCTACTCGATCGCTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019764.1\|WP_150111781.1\|21760_22387_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211842.1\|38482_38908_-\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NC_019764.1\|WP_015211843.1\|39039_40899_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|341116
NC_019764.1\|WP_015211825.1\|11648_13055_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350691
NC_019764.1\|WP_150111777.1\|28684_29641_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_019764.1\|WP_150111778.1\|29653_32884_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_019764.1\|WP_015211828.1\|15888_16542_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019764.1\|WP_015211844.1\|41387_42008_+\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211836.1\|28311_28494_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211829.1\|16717_17893_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|381147
NC_019764.1\|WP_015211834.1\|25340_25562_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_190274488.1\|22789_24913_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_190274485.1\|42338_43133_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|260099
NC_019764.1\|WP_015211830.1\|17896_19840_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|226036
NC_019764.1\|WP_051041652.1\|15131_15470_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211839.1\|32969_34961_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223540
NC_019764.1\|WP_015211841.1\|36242_38486_-\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NC_019764.1\|WP_015211831.1\|20529_21570_+\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211826.1\|13144_14752_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NC_019764.1\|WP_015211840.1\|34979_36002_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274050

Protein	Function_ID	Function_description	E-value
NC_019764.1\|WP_015211825.1\|11648_13055_+\|AAA-family-ATPase	gnl\|CDD\|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.77832e-28
NC_019764.1\|WP_015211842.1\|38482_38908_-\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	2.18758e-25
NC_019764.1\|WP_015211843.1\|39039_40899_-\|YbjN-domain-containing-protein	gnl\|CDD\|341116	cd17033, DR1245-like, possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans. This family includes a possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans, a bacterium that is exceptionally resistant to the lethal effects of ionizing radiation (IR), ultraviolet light and other DNA-damaging agents. DR1245, a protein of unknown function conserved only in the Deinococcaceae, and with strong structural homology to YbjN proteins and T3SS chaperones, may display some chaperone activity towards DdrB, a protein found to be highly up-regulated following irradiation; DR1245 may also bind to other substrates.	5.41543e-19
NC_019764.1\|WP_015211839.1\|32969_34961_+\|ATP-binding-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	7.80569e-34
NC_019764.1\|WP_150111777.1\|28684_29641_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.04027e-16
NC_019764.1\|WP_015211828.1\|15888_16542_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.31529e-69
NC_019764.1\|WP_015211829.1\|16717_17893_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.10788e-56
NC_019764.1\|WP_150111778.1\|29653_32884_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	1.94354e-30
NC_019764.1\|WP_190274485.1\|42338_43133_-\|hypothetical-protein	gnl\|CDD\|260099	cd13777, Aar2_N, N-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor. This family consists of the N-terminal domain of eukaryotic Aar2 and Aar2-like proteins. Aar2 is a U5 small nuclear ribonucleoprotein (snRNP) particle assembly factor and part of Prp8, which forms a large complex containing U5 snRNA, Snu114, and seven Sm proteins (B, D1, D2, D3, E, F and G). Upon import of the complex into the nucleus, Aar2 phosphorylation leads to its release from Prp8 and replacement by Brr2p, thus playing an important role in Brr2p regulation and possibly safeguarding against non-specific RNA binding to Prp8. Aar2p binds directly with the RNaseH-like domain in the C-terminal region of Prp8p. In yeast, Aar2 protein is involved in splicing pre-mRNA of the a1 cistron and other genes important for cell growth.	2.59972e-22
NC_019764.1\|WP_015211830.1\|17896_19840_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	2.30311e-48
NC_019764.1\|WP_015211841.1\|36242_38486_-\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	8.22283e-151
NC_019764.1\|WP_015211826.1\|13144_14752_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	6.67516e-65
NC_019764.1\|WP_015211840.1\|34979_36002_-\|phage-tail-protein	gnl\|CDD\|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	2.25689e-35

>NC_019764.1|WP_015211834.1|25340_25562_-|hypothetical-protein
MNTNYPGEKPSECSNSGYRSDGYQSSGYSSPQKSQQGNFEDGYQENVCDESNLADNAWTDTATRPNPQLELEL
>NC_019764.1|WP_190274488.1|22789_24913_-|hypothetical-protein
MNAQKKIRFPTYRLGFVLIKIAAIGLFSVSTVLGFPAIASVQSEFNSVPTRIWEIPRIDRQTSAARVLLPDWSQITFSNLPAVPNSGSWGGRSWLEGNTPDQILQLGDISEALKPELLSLASVEQLAVSPTNLENISLAAFPLAGKQKVAKLAQIVPNLSDLKLRDVAPFASLASQVLPRGGFNLSEVLISQIVSEFPQFAEASLNKIDLSEFFLTQIPSLSNVNLEQFDSWQGERLADIPNLDRMPLSNFPIPVGELGSTVMRIDAIYSTAESKRSNTISGSNIEGFAVKCDRNCAYIELDDLENIGRKAISHLEGKQWISGKYQEVRGGSGCLTGWEPTGRHPFGEAFKVVVMEPSETADTVDTALYFRFSLPCGNSPYIIGPVPFLSYGANSPIFVGRLEGGSSNSVSRSKGVASEPKFFKRSGSNKQLAAAKQNALPTQQVPESKRECVQPATYVSDVDVAALSEAITNLESTVRGDYQAIGELVCTRGARNCGRSLGRYQFMTYREDVQRAISSVPGGAEFLKQLSSGKKPNSEELFQYFPPALQDKLFQNYLAESVISTKQEIDPKTGQLFRGDRLIERVAQKHFGGRDSKIDASYSDFLGSYSLKQYGEKVRELYSNANVGNCASNSRNSDSSGTQVGYGSPPGGNSFLVNLSGFAIGIAFSLLLACGVSVLFSSPKLKSFLVLVGLGAAAAFSMGKLGF
>NC_019764.1|WP_150111781.1|21760_22387_-|hypothetical-protein
MQACDNSQYRVKKVVNPPAWLNWIGYWFRFGLMLFVLLSVLLGTAACSSSTAAFSEASWQEAWRVVPQQTLVKVIQSHSSLLKPESAISKLRLWRVTGKKGQLHLYDFNNSRLCGARGCLYAGYLIPNSKTQLPTEVFTAYLDQNVPPNTPFLQAEIESTQNNLPCLFVNQQGRAGRRLLKFCFNGISYQLADSQLFKEGERGLGSKE
>NC_019764.1|WP_015211831.1|20529_21570_+|hypothetical-protein
MVKSNNAQSTTQLPGSSDAKFRPQENRKALAFKQEVDPDLLSHDYNQTRRPSLPYGIIINDNPAGILIPYDQLVKAEWKQIPPVEELTTVELTEAVSGLFLIEARMLVLAFVPEYIRYKDIEENGEIAGTFVGLYDDYRQNFDKKIHDACSEHALIFLDPKNQPLHQVPIVVRFKNVALWSFKSAREEFYRNLERAFADYFNVDYSGKNDKWRSLGVLNIEFRAVKEGEGKNKSFCCKTHSITKPTETNLPKLYLGKPQQKKTIWGLHNSIAGFTEAGEAQLPALAAGTEPEVQVLPPENSRNGKGKSKPPRKIAQVEAEPDAELKELDNFDVAAEVEVEVDAEAD
>NC_019764.1|WP_015211830.1|17896_19840_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MNSYQFLPQIRHPLLLQGTTQSAAKRPLTGIDIGGLIGQFMNPEGLSMLGILLGLAVFSKIVGNGKGKVTSGRLCDTAEKMAATGLAIKQMKDKKRQPVTLWSGKPTYWFNGQWKGLSARLQTLLGASPTVWFPNAERGTLVIGAPGSGKTFSVIDRMVESAFQQGFPVIIYDKKGEQMKLHAPLAVRYGYDVQVFAPGEAYSGVINPLDFMRDAQDAVMAAEIGQVIARNASPGESKGNEFFEKAGELMAKGLVQLAKSSSYPDLAFVYAIIQLPNLVDRIYHAVHRPDNHPLKMDRWIASSFSQLLSSKDAEKTVAGIKATAEATYSSFIQKDLLRAFIGRSTIPVVLEGKKCIIFKLDDQRRAVVGPLLAAAIHLCVVSNLSRVRSDPFVYCLDEFPSLKFDRMDQWANEYRSAGGVPIVGIQSLNQLYNLYGDKKGAAIASALSTHILFNPGDLETAEKYSKRYGEVEVLIKSRSTGSSMGQQTSRSVNWSEQLQKKPLISADEILRFPQGKCVITSPAYGTGTEALFPYPLKIPVRYNDLKRAKDSESLWDTRIRPQLENRAASLSVDRGTGKSINIDEELENRIRAACKMLPHPNDPDEPVTVADIEDKSIANEPLSQTAESLIFSSFRKKLLDADIGRSS
>NC_019764.1|WP_015211829.1|16717_17893_-|hybrid-sensor-histidine-kinase/response-regulator
MEVKGDILIVDDTPNNIHLLSKMLGENGYKVRKVISGERALKAVSILPPDLILLDVKMPGMDGYEVCHSLKKQEDTAGIPIIFISALDDVFDKVKGFEAGGADYIIKPFEPREVLVRVEVQLKMRRLQQQLLCANDRLSAQNAQLTQEIKGRQQAEASLKVFMHAVSHDLRNPVTGMSMVLQTYLKEQPAGHQRVAGENDVVIDRLSFERIVQSCSRQLKLINSLIEMQQHEILGVPLDLQSISLYALTCSILSEWEPMLAKRQVVLKHQIAPDLPNVCADIDQLWRVFENLIGNALKYNQPGFTLTIDASFDRESYLCCTVADNGVGIKPQQLASLFDLYVRGSGVKRTSGVGLGLYISKQIVAAHGGEIGVESELGKGTVFWFTLPVGK
>NC_019764.1|WP_015211828.1|15888_16542_+|response-regulator-transcription-factor
MTAKSATKPLTILIVEDDPMMQMGLSRLLAAQPHFAIAGQVEDGNSAIASALELKPDIVLMDIGLPDIDGIAAASQIKAALPDTRIVMLTSHSSDTEVLASLSCGADAYCIKGTSPEQLLLAINAVKEGSAYLDAKIASCVIQNLRMPVQNCEKSQFSKREMTVLKLLVEGKSNKEIGAQLSLSPNTIKGHVKAILGKMEVNDRVQAAVIAMRNGLV
>NC_019764.1|WP_051041652.1|15131_15470_-|hypothetical-protein
MEVGKRWFYSEIEKIAHLEIRQGFDTCKMRQDLGLKKSKQKLSNKFEAHCLDSWVLANWYICGHTCPNPLQPDNTQLIEVISLEFHRRQLHRLQHSIGHVRPRLAWNFKCGV
>NC_019764.1|WP_015211826.1|13144_14752_+|DNA-polymerase-III-subunit-beta
MTKFRLSESTAKEAIPQKASQKKSSTGIRARETANLDNIANNPHSTDNSQKLAVFPDKISEVTAANSSKSVKKTGKDKTNVAPLSEPETTGSQQLETSETLTNSAELLPTPTPSLETPVRDATAPSPAPTPTTVEIVCDSREFNDYIQALKGIIPNNSTHPILHNVLIEADLKAQLLHLTAYNLEFGMQVSFDANVNQAGKLTLPAPILADILGKFPNGSLTLKSSSEIIKESDVSSVSATLSASRSKHAIRGLAAGEFPVIPSVEQKLVTLPASVLIAVLKASLFAVSSEENKRILTGANFQLSRDEDRGLDKLRIWTTDGHRVAMVVGLSENNNSNPSIDRPVQFTVPAKVLRVLERNLNPTDRIAIYYDGSAQQSTNIVIFQWENWRLTAQLLEGQYPLCDRIIAPHRHLFSNQLIVERQALLKALERLASHSDKSHVTVILELDSEFQQVMASINNTISSGNETIDAKISGGNFRVKCDIRYLIDTAKAISSSDLRILMTAPTAPLLIVPFGIPSLGTEALDCEYIVAPQE
>NC_019764.1|WP_015211825.1|11648_13055_+|AAA-family-ATPase
MIQALLEPPQKLTQFPFTLKPQQQQALDKLRTFLTTTESFFLLCGYAGTGKSTIVFQIIKELLSQSKRIALTAPTNKAVGILRKMAASQGIFGVDFMTIHQLLGLGMVRKEQEKALSQTSSSSLHLYDIIFLDECSMVGSELWKWIERNFERTFFNHRKLILMGDPAQLNPVGEKKSPAFSVANKAVLTQVVRQAGESPVLDFITECRSFVNSKTDIFLPHSKYKKGDKSNGAFKVKSETLLQYAVKTIDREFSQNPDRFRILCWTNKRVKYYNHLIREQVYGQAAPRFVPGERLITKKPVMAPDGKTVILPTSTEFTVKEVEINQHCGYRVWLLKIVTDGGFLRQIFVLHESENKRYQAELKEKLKSAKRNGFLWRKYYWFKDDLFAEIDNCFALTIHNSQGSTFDEVGIDGSDLFSRLLIGKDLSSKQKLKEYHRLYYVGASRCRDRILFVPPNLKQVQRVEALLI
>NC_019764.1|WP_015211836.1|28311_28494_-|hypothetical-protein
MNIQNRIINLHSSAAKRAKQALSNSIGSREQHTVKNSQSGIKNLNAIATSQAKRISKTEK
>NC_019764.1|WP_150111777.1|28684_29641_-|hypothetical-protein
MTIQEIRPKNSMAIFSLDVDRTGEYLVVGQSFSYVGSPPSHVGLPNLTLWSLSNLQLLREIESLQSESIQSVCFLSDGKTIAYTKSGSNVELYHVDTSIFSQLKIAGFAKLSSSKGSHYLGAAGIASEVWNTETQERIWFLQDYVAMDIFDRKPAPVTLSADGKLVAVAGAGVNQVLIYSLEHNQIVQRLEDSPSQAHWISMSPNSNYLAVIGHLAKGGYIWDLRSGEQHLPLNYLSESDGSWCLCFHPNSQYLAIGSLVGYVSIYRLSDGETIFSQRKHEGRVWDLVFTPDGKKLISGGDDGIVSILNVSDILQTGN
>NC_019764.1|WP_150111778.1|29653_32884_-|DUF4157-domain-containing-protein
MLKPCGAIEACMFYQRVQKANSETPLRQQHNRLFPRPSDNFKPLPAPTTPDGRIDLSRLPTSDWMKNDQVLLRWAREEAAANSSKTPEIPLSIQAKLTVSTPGDKYELEADATAAKVMAMPDSALLSQQSASKQSNPTTDAVQRAGAEDKTVSPELENRIHNATGGSPLPESVRSFMEPRFGVDFSAIRVHTDSAAAQMCKEVGAKAFAVGNRIYYGAGYAPGNNELTAHELTHTIQQGATKRLNKQTRQLPAPSPSLVAKKITITTPHHNKQLRQFPPVESASDSLKTSSSNLTKPHQIERQVALDEIPASTLTAQQITSARTGAKFNRISPHISEKLTPTSSVTAKQFTPDNTPENFNKISPHIWEKLTPTTSLSAKSLSPTAENKPLSVSKTAPQIQGNWLKDRAIQAFEELMKRVGGPAATQVVAVLRRAGNAFGAIVGNPKGFLTNLVNALQTGFKQFSGNIVNHLKTGLVAWLTGTLSATGLSVPNQLDAKGIVSIVLSVLGINYGRVRNILVQRIGGAKVKQLESGFDLMQRLASGGLAAAVQQVMELGQTLQQLQTTVIESVRNWVIETVVRAAISKLVATFSGFGAIAVAVEGIYNAIAFLIEQANKIQALVDAVAASIGNIAAGQVLQAANYIESTLARSLSVAISFLARIVGLGNVGQKVREIIGRVRARVDVAVNNLVDYVIGQGNSWLAKSGGGSRRDRASSNNQQTKSNPVLNNRRTPTNRPNPQQTKPKPVPTNQSGNQQDKQRQRTQVPNFTTQEEFYMSGKKHHLIAKYRQGNLNLFIASDPKQLIPALNRAIAEVSKSNRPDKSYYIGILNQVLDYAKDALHIVKTKGEYLKGVATDPESERQALELAIDRELALAANQLKLLAEKAGIKSLDDFYALPPSQRFIPGANQTEIGKFIRKKLYDEKHNWQGTRNKIIAQKKPEVIARVRSAQQKQDTNMWKQLERDGLVDPGADIKTYNPDKVQYHVDHIEPVSARWNAEGYDSSDSIRARQLLETNNLRVVTGAYNTAKGSEVPGSGRVTYKPYVGPNFTSSIADGGIQGALRIDGKPFVDASGKELI
>NC_019764.1|WP_015211839.1|32969_34961_+|ATP-binding-protein
MTPSSEEWHKANYRYLLAQIEQVRQILEHHLSADAKQSTPQLPLPHAVAADSPTDPLFRLDELCATFHLKAIERNILLMCAGMELMPDLRLLCAAIHGDPQLNYPTFALAAKIFPSVEWSVISSYSPLQQNHLIEIGASFPLTLSPLRIDQTLLCYLLGEPCLDLFLSSTIKQITLSQTPGIKLQPVPETIAVELAKFLANHTISKNTIVQLCGLEAAVIQDIIVSACSVSGCHLFTIKASWLPAVTSELNYLIQRWERFAILFNAVLLLDCHQDNTVTGAVLDAMQYLFQTIKSRLIVTSVERISGLKNSALTFNVPKLTASEQLAIWQHNLGSAAAKLNGKVETLITYFNLSSSAIQAVCTEALNASIVNSSNPEKFEAILWNTCREIARPQLEDLAVRVESTATWDDLILRAEQKQLLQEMVAQIRQRSQVYYRWGFGGKSARGLGISALFSGMSGTGKTMAAEVVANELNLDLYRIDLSAVVSKYIGETEKNLRRIFDAAENCGAVLLFDEADALFGRRSEVKDSRDRYANQEVSYLLQRMESYQGLAILTTNLKDSLDNAFNRRIRFVVKFPFPDTAERILIWQRVFPKNTPTEGLDFRNLARLNVAGGNICSIALNAAFLAAEAKEPVMMKHILQATQSEYMKLERTLTGSEIGGWV
>NC_019764.1|WP_015211840.1|34979_36002_-|phage-tail-protein
MSQSNYRPTLAIKLASMQPPEAADSSALAGFAGNNTEMAIANNLLLQPGEPGEMLVQLENLGGRPLRWRLEIEGDFPLGWCTWQQEEAEEIAPNQKVDKSLCFEIPEDYFENQYALNRGRDRLKINYETQVYVYAEAQTSRQLVAYRVFNLCVRPSTSYLNFLPGIYREIDFIGRFLTIFEQAFDPAVQTIDVLWAYLDPLTAPSALLPFLAHWVAWPIDRRWDIKQQRRLIRNAVELYRWHGTRRGLRFYLHLYTDLPLDENLPEAEKHISIEEVFTRGFVMGETIIGRDSMLGGGRPFHFFVRLRPEPDKPIDERLVRDIIEREKPAFCTYDLLISQT
>NC_019764.1|WP_015211841.1|36242_38486_-|putative-baseplate-assembly-protein
MKFDFLPELPKSDLDDRTFNDLVEECILRIPRYCPEWTNHNPGDPGITLIELFAWLTDQMLMRFNQVPRRNYVAFLELLGIRLQPPAPAWCELTFYLTKAQPEAIKIPYATEVATVRTETQQSIIFSTDEEFTIANPQIRHFLTGLTEEDRPENLRERTPVNSQWWNLEETLLFERARPKNCFYLVLQEDRENPITGNVIAFTFRGEAARSTGINPDDPPLRWEAWNGTNWQSTILRKQEHDRTKGFSFSELGQQSTNPIIDGADVILHLPQQFPIADFGTEYRGHWIRCVYTTPKELQSSYSSSPSIVGIAVRSIGGAVNASECVRVENELLGVSDGKPGQLFQLQAKPILNRKAGEHIEVRPINSPAEIWQEVKDFSNSGPDDLHYTIDSQTSTIQFGPLIREPMQIKQRTRDRSQNQPGGTIVRRTSTENRNLSNIQPDYASGAPNEALERQYGKVPPPGAEIYMVVYRTGGGSRGNVQAEKLIVIKQAIPYVKSVINYQPAVGGIDPESLDEAVIRVPQILRTRESAVTPEDFENVAKTASRAVARAHCLTNATNATPGRVTLLIVPKVDTETIDFRLGMHPDRYFALNSQLETEILEYMKDRKPLGVQVKLQEPEYVGVSVTTEVIIEPKYNNPRAIEQIRTQLLIALYRFLNPLTGGTEGKGWDLGRPVSRSDIFALGQKIPGVRYLGMAELFELRKYASGWFREELPLDTIAPGSLGLICSWADEENSRLRSGHSIEFFD
>NC_019764.1|WP_015211842.1|38482_38908_-|GPW/gp25-family-protein
MPEDYYYPQPEDYIGAGLAFPLQVNVQGGVQLSSSSHNIEESIVIILRTDLGERVYRPNFGSRLSELVFEPMNVQTLLLIRLYVEQALEMWEPRIILKEVRADPDPIRGRVDIEIIYQPKNSPDPRSLVYPFYLSPTGQEP
>NC_019764.1|WP_015211843.1|39039_40899_-|YbjN-domain-containing-protein
MTTQTETYQLDTEFTLRDSSQSPLTIHALTLSITTQDRRPIESRLTFQVTPETYQRIDTESLFNLKPELRCSLTGTEFTSDSPIEIIACLKPELITPIADIPTYLKTLSEQQDNSLLFTKNWLALQVKQRETSYRTFWDYLNLEAMTVGNINNEKVNDAIVSFFKDCAEANLLSMNGETISQALLEVTKEFEEWVDANFSNINEESIAGTIESIGKSFEELAASSSSETERDILSALIEFFASDDWPFVKIDGEPVLRALFAGKNGKWTCYAKARTEKTQFVFYSICPVSVPESKRLAIAEFITRANYGTIIGNFELDFATGEIRYKTSIDISGSTLASTQIKQLVYANVMMMDEYLPGILSVIDGDVEVKDAIASIESPPTTQSDGAPARNESPLENPPSPDARSQPVEIKNTPPSTVILPDEPKPNLNNNSFPPLPQAATPVNNIEQLPTNSPSEKPKPIGEILSLLTLEEIADFDRVRVMLHTKQPFAAKTLMTKLEKQLTARLNADGSTIFADSKNFFDQNKTPLKTANLIRRYWNLFERSTQLIEGGENNAPSIRQAITPTLLVVEKLAHRIEARIAQIVASYVDAKLEIECLIEIEQLTEQLTYCLEQLKNST
>NC_019764.1|WP_015211844.1|41387_42008_+|hypothetical-protein
MKNRSYFFDLELFNITEIIEELSATGAVSIPLLQEKPRLALLQETKLFSFTPEHGVFGKGENTVVKAFSSFESFSPHSLYLKLVAAFQTLIANKLADLSFYPFSSVLDFNSAVLQCYQPGKLGISPHRDWRSAINLVCIFNIDGIGDFYLCSDRQGTNAVKIATKPGNIIFLRAPGFLSSENRPFHYVANIRSMRYSFSLRQRISS
>NC_019764.1|WP_190274485.1|42338_43133_-|hypothetical-protein
MLNVPPYQARIDFLSTPIDDKFAGFREVPYGLHYINVKTQNNYPGFWCYVKSDQVVVKMLRARSQEFEDRDPVGTAQYQELLSVGLLKNHMIPYDHKKWGSWGLLTCHIDRKYFPVTLHTSPQHLSPSQPSQLDWEREVFETHKGSSLSFMSEFQFAFIRWYVSDLDCPATDVEAFNRWSYLVEATCNADIASLAKAPELVNVIADDLISQFNSLDDSLLPANDPLVNAARLLQEKMLNGEIPYLVSQGRKLKKYLDERYGNFG

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Crispr_ID: NC_019764_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019764_2

50769-50923

Orphan

Consensus_repeat	Method
TTCGAGTTGAACGGACGAAGCATTTTGGTCCGAGCGAGCTGGGGCAGAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019764_2

>merge|NC_019764|2|50769-50923|CRISPRCasFinder
TTCGAGTTGAACGGACGAAGCATTTTGGTCCGAGCGAGCTGGGGCAGAGTCTGCCGCCTTTGTTTGTACCTGTTCCTCTGCTTCCGATTCTGGCTGTTCTAGCGATTCGAGTTGAACGGACGAAGCATTTTGGTCCGAGCGAGCTGGGGCGGAGT

>NC_019764|2|2|50769-50923|CRISPRCasFinder
TTCGAGTTGAACGGACGAAGCATTTTGGTCCGAGCGAGCTGGGGCAGAGT	CTGCCGCCTTTGTTTGTACCTGTTCCTCTGCTTCCGATTCTGGCTGTTCTAGCGA
TTCGAGTTGAACGGACGAAGCATTTTGGTCCGAGCGAGCTGGGGCGGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019764.1\|WP_083888119.1\|57176_58376_-\|ISAzo13-family-transposase	unknown	unknown	gnl\|CDD\|369439
NC_019764.1\|WP_150111637.1\|49332_50288_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_019764.1\|WP_083888119.1\|61114_62314_-\|ISAzo13-family-transposase	unknown	unknown	gnl\|CDD\|369439
NC_019764.1\|WP_015211854.1\|51262_53377_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NC_019764.1\|WP_015211842.1\|38482_38908_-\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NC_019764.1\|WP_190274485.1\|42338_43133_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|260099
NC_019764.1\|WP_150111782.1\|44700_48210_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_019764.1\|WP_150111783.1\|59402_59819_-\|histidine-kinase	unknown	unknown	unknown
NC_019764.1\|WP_015211855.1\|53508_54870_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211856.1\|54879_57159_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211844.1\|41387_42008_+\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_190274486.1\|60504_60666_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211859.1\|60022_60454_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_190274487.1\|62785_65182_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_019764.1\|WP_015211857.1\|58441_59275_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_019764.1\|WP_015211848.1\|43709_44537_-\|AAR2-pre-mRNA-splicing-protein	unknown	unknown	gnl\|CDD\|260099
NC_019764.1\|WP_015211847.1\|43206_43686_-\|hypothetical-protein	unknown	unknown	unknown
NC_019764.1\|WP_015211841.1\|36242_38486_-\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NC_019764.1\|WP_015211843.1\|39039_40899_-\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|341116
NC_019764.1\|WP_015211840.1\|34979_36002_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274050

Protein	Function_ID	Function_description	E-value
NC_019764.1\|WP_083888119.1\|57176_58376_-\|ISAzo13-family-transposase	gnl\|CDD\|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	1.68533e-112
NC_019764.1\|WP_150111637.1\|49332_50288_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.79196e-42
NC_019764.1\|WP_015211841.1\|36242_38486_-\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	8.22283e-151
NC_019764.1\|WP_015211842.1\|38482_38908_-\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	2.18758e-25
NC_019764.1\|WP_015211843.1\|39039_40899_-\|YbjN-domain-containing-protein	gnl\|CDD\|341116	cd17033, DR1245-like, possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans. This family includes a possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans, a bacterium that is exceptionally resistant to the lethal effects of ionizing radiation (IR), ultraviolet light and other DNA-damaging agents. DR1245, a protein of unknown function conserved only in the Deinococcaceae, and with strong structural homology to YbjN proteins and T3SS chaperones, may display some chaperone activity towards DdrB, a protein found to be highly up-regulated following irradiation; DR1245 may also bind to other substrates.	5.41543e-19
NC_019764.1\|WP_150111782.1\|44700_48210_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	4.10777e-31
NC_019764.1\|WP_015211848.1\|43709_44537_-\|AAR2-pre-mRNA-splicing-protein	gnl\|CDD\|260099	cd13777, Aar2_N, N-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor. This family consists of the N-terminal domain of eukaryotic Aar2 and Aar2-like proteins. Aar2 is a U5 small nuclear ribonucleoprotein (snRNP) particle assembly factor and part of Prp8, which forms a large complex containing U5 snRNA, Snu114, and seven Sm proteins (B, D1, D2, D3, E, F and G). Upon import of the complex into the nucleus, Aar2 phosphorylation leads to its release from Prp8 and replacement by Brr2p, thus playing an important role in Brr2p regulation and possibly safeguarding against non-specific RNA binding to Prp8. Aar2p binds directly with the RNaseH-like domain in the C-terminal region of Prp8p. In yeast, Aar2 protein is involved in splicing pre-mRNA of the a1 cistron and other genes important for cell growth.	1.83758e-20
NC_019764.1\|WP_190274487.1\|62785_65182_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.29459e-95
NC_019764.1\|WP_015211857.1\|58441_59275_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	6.02304e-14
NC_019764.1\|WP_190274485.1\|42338_43133_-\|hypothetical-protein	gnl\|CDD\|260099	cd13777, Aar2_N, N-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor. This family consists of the N-terminal domain of eukaryotic Aar2 and Aar2-like proteins. Aar2 is a U5 small nuclear ribonucleoprotein (snRNP) particle assembly factor and part of Prp8, which forms a large complex containing U5 snRNA, Snu114, and seven Sm proteins (B, D1, D2, D3, E, F and G). Upon import of the complex into the nucleus, Aar2 phosphorylation leads to its release from Prp8 and replacement by Brr2p, thus playing an important role in Brr2p regulation and possibly safeguarding against non-specific RNA binding to Prp8. Aar2p binds directly with the RNaseH-like domain in the C-terminal region of Prp8p. In yeast, Aar2 protein is involved in splicing pre-mRNA of the a1 cistron and other genes important for cell growth.	2.59972e-22
NC_019764.1\|WP_083888119.1\|61114_62314_-\|ISAzo13-family-transposase	gnl\|CDD\|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	1.68533e-112
NC_019764.1\|WP_015211854.1\|51262_53377_+\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	2.1988e-33
NC_019764.1\|WP_015211840.1\|34979_36002_-\|phage-tail-protein	gnl\|CDD\|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	2.25689e-35

>NC_019764.1|WP_150111637.1|49332_50288_+|IS630-family-transposase
MKTYSIDFRQKIMDVYHNEPLSQRAIANRFCVALSFVQKLVKQYRETQNIAPRTERCGVKLKLNAEQLLILAELIEENNDATLEELRYLLYQKIGFTISVATMGRMAKLLNMTFKKKTLFPSAKGTDRVQGLRYEFWQKVREVCFKDLIFIDESGVNLAMVRLYARSLKGSRARGQKPNKRGKNVSIIGAISVNEVLTSVNLIGTTDTITFEAFIIRKLVPKLWKGACVVMDNCTIHTSEEIEKAIKSQGAKIIYLSPYSPDFSPIEHLWSKLKNILRSIKTTNYRELAKAIEFAFNQVTLSDMRNWFTHCCYCTSSL
>NC_019764.1|WP_150111782.1|44700_48210_-|DUF4157-domain-containing-protein
MAAKVMAMPESAVQESIQRQNPLSNGSEPNSPTNSHAPAVQRSATGEEAEIQMKSGTRQAADGSIQASKSIESRLADSQGGGSPLPQEVRGFMEPRFGADFSNVKVHSDSNAVQMNKELGAQAFARGSDIYYGAGKSPGSNELTAHELTHTIQQTGGKQLSASPTVSLRSNKETFQGNSIAPPSLDTPTKTLPEPEKSPPESEKTTPSQPEQKTTPPAAPQPEKAENANAPEKQNGFGMFEQLGQVKAIAGKLQSVLSGAGGVIWSIVKDPVGFLGNLVAGLRQGFGNFYANVNTHLQTGLMGWLTGTLGPMGIQIPEDVFSLKGAFSMVTQVLGVTWDYIRTKAVKQFGERTVARMEKSSEIFQMLAKGPMGLWEQAAARFDDLKETTIDQIKNTIATQVIQAGIKWMMSLLNPASGLVKAAFAIYDIVTFFTQRASSVVELAQAATGAVAAVASGSVGGAASMVENALARSIPVAIGFMASLLGINGLATKVQEIVKKVRVRVDGAIDGVLLKAKDVFLKEKVKGNKDKSILDSKDDRDSQVSETSDLEHDRKVTVGLEQLHQEQARYLKNDAIAKEDAQKVAAKVKAENPVFKSITVADNKETWDYAYVASPLEEASGAKKAEKNSINPEKETEKVEKQESLDGKSPEELVKAAGSIWKEVKKRYLKDTTTMKRITDYRKQEVARITALVKQNLNADFNSLIAGSDELTSDYDVTFDAGKNSTVEIQAVKEFNRLFRLEWGKESGTVFDTNVYTTGHMPPGVGELKIKELNQLKKQLENAPPGQKRALILQIAQKKSQIRREARKLQKDNQSETQEQLTKGSEKAYVATLDVMSLIKIRRFMTDQEWHDYTKYMLNLFDDKKDVAVKVETKRRLREANQIYKDAQRKLDSRILVNNNEEVEIIGEGFNKQVKGFDRRSKGKIPAQQLEYLEKRVQEIKDKNLDAEMQANNRLYEDYLDEVEKILTEIEKTKRQWNNTEDEKTKLNQLTLNLQKMRSIALVFANEAYHTGGAVEAVVLNQQLDLKLPLRIERYLESINENTGFFVEQIEHNEDLGTAFWKSGKYLERICYGASKIKLKDFNPPSKNTSMLKMSLTLMDIKKEKNDYKGKYKENEQKSIAQQKSEDAVTVAAKEGYTSKESLRKEVLELNLTINAEVRKRMRNKYTGY
>NC_019764.1|WP_015211848.1|43709_44537_-|AAR2-pre-mRNA-splicing-protein
METEYGFIILRDVPKKEARIDVFFSDIEGGFRGFQLVPAGVHYASVEVDGEHKGFWCYLQPNEAIVKIFNSSLQQFEDDEPETTARYQQLALGGAMSQALIAYDRNCWTIWEQLTNHINAADFPPTLHQEESINPPDNLRSEELADWMGKQQKTRFEQALFDTHDGDINAFLAELQFAFIRWFIDERDIEALNRWRHLLQALYNAGDRGISKAPALFVKSIDLLMLQFDCLDDAIFTPDSFIISQATYLAEDMIDSEIEEVAEKGCEFANYLEER
>NC_019764.1|WP_015211847.1|43206_43686_-|hypothetical-protein
MSAYIILRIEYLQSLMMQIGYKLQHIQHYEHLFHNVSKERQKARKLDRVGLLFAKYGHRAIEALNELDKSFKDAGVAFDLSHTSAKSIVADLEMEFVKKASDGTPQEKVSQAVQAAGVVSKDLRKGQNLDLEVMQSSWKELAIKVLARIPSLLNQPKSE
>NC_019764.1|WP_190274485.1|42338_43133_-|hypothetical-protein
MLNVPPYQARIDFLSTPIDDKFAGFREVPYGLHYINVKTQNNYPGFWCYVKSDQVVVKMLRARSQEFEDRDPVGTAQYQELLSVGLLKNHMIPYDHKKWGSWGLLTCHIDRKYFPVTLHTSPQHLSPSQPSQLDWEREVFETHKGSSLSFMSEFQFAFIRWYVSDLDCPATDVEAFNRWSYLVEATCNADIASLAKAPELVNVIADDLISQFNSLDDSLLPANDPLVNAARLLQEKMLNGEIPYLVSQGRKLKKYLDERYGNFG
>NC_019764.1|WP_015211844.1|41387_42008_+|hypothetical-protein
MKNRSYFFDLELFNITEIIEELSATGAVSIPLLQEKPRLALLQETKLFSFTPEHGVFGKGENTVVKAFSSFESFSPHSLYLKLVAAFQTLIANKLADLSFYPFSSVLDFNSAVLQCYQPGKLGISPHRDWRSAINLVCIFNIDGIGDFYLCSDRQGTNAVKIATKPGNIIFLRAPGFLSSENRPFHYVANIRSMRYSFSLRQRISS
>NC_019764.1|WP_015211843.1|39039_40899_-|YbjN-domain-containing-protein
MTTQTETYQLDTEFTLRDSSQSPLTIHALTLSITTQDRRPIESRLTFQVTPETYQRIDTESLFNLKPELRCSLTGTEFTSDSPIEIIACLKPELITPIADIPTYLKTLSEQQDNSLLFTKNWLALQVKQRETSYRTFWDYLNLEAMTVGNINNEKVNDAIVSFFKDCAEANLLSMNGETISQALLEVTKEFEEWVDANFSNINEESIAGTIESIGKSFEELAASSSSETERDILSALIEFFASDDWPFVKIDGEPVLRALFAGKNGKWTCYAKARTEKTQFVFYSICPVSVPESKRLAIAEFITRANYGTIIGNFELDFATGEIRYKTSIDISGSTLASTQIKQLVYANVMMMDEYLPGILSVIDGDVEVKDAIASIESPPTTQSDGAPARNESPLENPPSPDARSQPVEIKNTPPSTVILPDEPKPNLNNNSFPPLPQAATPVNNIEQLPTNSPSEKPKPIGEILSLLTLEEIADFDRVRVMLHTKQPFAAKTLMTKLEKQLTARLNADGSTIFADSKNFFDQNKTPLKTANLIRRYWNLFERSTQLIEGGENNAPSIRQAITPTLLVVEKLAHRIEARIAQIVASYVDAKLEIECLIEIEQLTEQLTYCLEQLKNST
>NC_019764.1|WP_015211842.1|38482_38908_-|GPW/gp25-family-protein
MPEDYYYPQPEDYIGAGLAFPLQVNVQGGVQLSSSSHNIEESIVIILRTDLGERVYRPNFGSRLSELVFEPMNVQTLLLIRLYVEQALEMWEPRIILKEVRADPDPIRGRVDIEIIYQPKNSPDPRSLVYPFYLSPTGQEP
>NC_019764.1|WP_015211841.1|36242_38486_-|putative-baseplate-assembly-protein
MKFDFLPELPKSDLDDRTFNDLVEECILRIPRYCPEWTNHNPGDPGITLIELFAWLTDQMLMRFNQVPRRNYVAFLELLGIRLQPPAPAWCELTFYLTKAQPEAIKIPYATEVATVRTETQQSIIFSTDEEFTIANPQIRHFLTGLTEEDRPENLRERTPVNSQWWNLEETLLFERARPKNCFYLVLQEDRENPITGNVIAFTFRGEAARSTGINPDDPPLRWEAWNGTNWQSTILRKQEHDRTKGFSFSELGQQSTNPIIDGADVILHLPQQFPIADFGTEYRGHWIRCVYTTPKELQSSYSSSPSIVGIAVRSIGGAVNASECVRVENELLGVSDGKPGQLFQLQAKPILNRKAGEHIEVRPINSPAEIWQEVKDFSNSGPDDLHYTIDSQTSTIQFGPLIREPMQIKQRTRDRSQNQPGGTIVRRTSTENRNLSNIQPDYASGAPNEALERQYGKVPPPGAEIYMVVYRTGGGSRGNVQAEKLIVIKQAIPYVKSVINYQPAVGGIDPESLDEAVIRVPQILRTRESAVTPEDFENVAKTASRAVARAHCLTNATNATPGRVTLLIVPKVDTETIDFRLGMHPDRYFALNSQLETEILEYMKDRKPLGVQVKLQEPEYVGVSVTTEVIIEPKYNNPRAIEQIRTQLLIALYRFLNPLTGGTEGKGWDLGRPVSRSDIFALGQKIPGVRYLGMAELFELRKYASGWFREELPLDTIAPGSLGLICSWADEENSRLRSGHSIEFFD
>NC_019764.1|WP_015211840.1|34979_36002_-|phage-tail-protein
MSQSNYRPTLAIKLASMQPPEAADSSALAGFAGNNTEMAIANNLLLQPGEPGEMLVQLENLGGRPLRWRLEIEGDFPLGWCTWQQEEAEEIAPNQKVDKSLCFEIPEDYFENQYALNRGRDRLKINYETQVYVYAEAQTSRQLVAYRVFNLCVRPSTSYLNFLPGIYREIDFIGRFLTIFEQAFDPAVQTIDVLWAYLDPLTAPSALLPFLAHWVAWPIDRRWDIKQQRRLIRNAVELYRWHGTRRGLRFYLHLYTDLPLDENLPEAEKHISIEEVFTRGFVMGETIIGRDSMLGGGRPFHFFVRLRPEPDKPIDERLVRDIIEREKPAFCTYDLLISQT
>NC_019764.1|WP_015211854.1|51262_53377_+|AAA-family-ATPase
MNANTIDNWSSGNYRYLIASAAGVRLVLENFVARRQDESRSSEEAAIQAAIEVAETLLPKPSALQQLCREFKLSDFERNVLLLCVATELDPCFADLCAQAQESAALSYPTFNLAMSALSMPHWDAISPDSPLRYWQLIEVVRHRETLSSSQLQINERILHYLMGVDCLDAAFKGIIEPVSISSGKMVRSPSLSLTQSHFTLASQIAGIWTENRVRQSSNFAFDSLPITARPLPIVQLCGSEVASKTEIALAACELANLKLAAVSTAVIPTVTAELNELILLWQREAKLNQYALLLDCDEMELQDAAKENAIAQFIAKISSPLIIATLDRRRASRNPFITFDVNPPTKQEQLEIWQNALGKIAPILNGQVELLVEQFNLNAPTIYAVCDEAIGFTSEIVGTDFTDKLAPQETIKIDRSAAIQNRLWDTCRAQSRPQLDDLAQRILPAASWDDLVLPATAHNTLQEIAAHVRQRTKVYGQWGFASKGGRGLGISALFAGMSGTGKTMSAEVLATELQLDLYRIDLSSVVSKYIGETEKNLRRVFDAAEGGATILLFDEADAIFGKRSDVKDSHDRYANMEVSYLLQRMESYQGLAILTTNLKDSLDTAFLRRIRFVVKYAFPDTKERAEIWRRVFPKNTPTESLDFARLGRLNVAGGNIRNIALNAAFMAAEAGEAVMMKHLLTATKAEYIKLERTLTDEEIKGWV
>NC_019764.1|WP_015211855.1|53508_54870_-|hypothetical-protein
MDAFNLWNPYAIAPRVLEFDVTPTEVGILKDGTIDWISHCLRALGINLLPTQWSIVPFRSNFYSDYPDELEWKDRWPIGWLIRVELNEDIPILSAFSNRFPVGIDKLDLSAESGYYDPRHETNALTVSEFASAVGNSERIQQEFIRRARVALGEAPHFQLSIRILPDRNWQLRTLIENTEFPNFVFGLDGLRDYLYQQGGAITWRKALNSNPPPATLNLHSISPDTLEWSQGVPSKDELCIIFHSEQPGLFGVDTGAAQLARAFDDIEPAQNQAKLAELIAALVMDEDVRVRSGAIQFFQQRPDVPDGNILSEAFELRSPLFIGVEADPQELSGDLQFQLARALAERAKTGDVLARETLRREALRPGCGESTIIALFLTDRDWLFEKAGDIVIKTPEIAVLLIGKIVRQQQDLRPFLLSVNGRVSRKLLQTALTDAAPENLADYLILLTDRVE
>NC_019764.1|WP_015211856.1|54879_57159_-|hypothetical-protein
MWRSLTNSSSFNNQESIQRQPLTVSTTRERIQGGFLGIGNPSEKIAAALAGFASQLPGYSILTLILGKDPISNRPVERTPASLIRALLGLVPNGDKIFNNLQQSGALQKAFSWFNGEIAKLNLTFNAIKTLFGKALSSLGIGDALNPIGAFAKIKNIILEPLARIKNLAAAAGTKVMEIAFEGFLNMAGGASGKVMGILRQAGGVFGSIIKDPVSFCGHLVSALRGGFQKFSGNIATHLKNGLTGWLLGALTGAGLTVPAQLDTKGIVSIVLQVMGATYARLRGKLTNKIGEQKVARLEKAFDFLRTIVTGGLAAAWQKIAEFTGNLQETVIGSIKEWVMSKVITAAIAKLISMFNPAGAIIQAAMAIYNTVMFFVERGSQIAALAEAVFSSIGNIAKGNVAGAANYVEQTMGRSLPVTIGFLARLIGLSGVSEQIKNVIKKIQDKVENALNKLANFIVEKGKSLLAGGGGKNKPDTSTQGNNNGRSSNGEVKLEKAFTMVSEAHHLYFEAKKPKTPKVEMATGRRDVLENKVRRAIQQEEQGARRPKLLNPLKQIQAKLASMQWVWEANDGNSQKERQIRYEYLQMLETIATVLTGLGAEFGISDLEFLGHPSKYAEQDSDGKTRLKQEYRNKVRTWFYPNSYRSNVEQWKKTRLATLKIGAPSGHFKDEMTGKFEPINVSNLATNVTIDHISPGVSRHWNTDNGGHNQKQDKRADFYNETSNMRLVAHKNNSSDGSRNAPAYNPEVGPNFRGPDDNP
>NC_019764.1|WP_083888119.1|57176_58376_-|ISAzo13-family-transposase
MKLTEHAKSLYIETAKKLKGTDRRQFMASVVKDLGIGGQTLVERELGWNRRTIRKGMKELKSGEPIVDGFKRSGRKRVETKLPNLLKDITSLVDPHSQTDPSFKSTRLYTRMTANEVRRQLIKQFGYSDEELPSAETIRRRLNDLGYTLKRVLKTKPVKKIPETSAIFEQLEQVNTAADNNPNTLRISIDAKASVKIGEFDRGGKNRTPTIAVDHDFSTQSSVIPYGIFLPEYNELFLFFVTSKLTADCIVDLLESWWQTVKHRFSHIQKLVINQDNGPENHSRRTQFMKRILDFSQQSQLTLQLAYYPPYHSKYNPIERCFGWLEKHWNGSLLDTVETVVNFAKTLTFKDKNPVVTLVETIYSTGVKLSELAMAEIETQIHRLPNLHKWFVEIFAKPT
>NC_019764.1|WP_015211857.1|58441_59275_-|DUF4157-domain-containing-protein
MEHQRIQRTSSWSPTFTKRDTPSNDEPPKTVQKKTAPASQPQQSLVDRSPEPSYAMQQDPVMMRILANNPVVRQIFQQYSQPGVATQDKDSNDAVQKQTAPAAPAEQSLVDRSPEPSDAMQQDPVMMRILANNPTVRQIFQQQKQPGEKSSESKIQQVAAKGFSGSSTSLPHQNQLQQSFGVDLSDVQAYIGGEAATACQQIGAQAYASGNQIAFKEQPSLELAAHEAAHVVQQASGKVQLAGGVGKVGDKYENHADAVAAKVVAGESAAPLENATE
>NC_019764.1|WP_150111783.1|59402_59819_-|histidine-kinase
MTRLPTILNQSDIESNFPRPPYGSGDDDEIDKKIEARTRGKQVRVIGKYTQIDARQRPVPPPVYRGIVVIILADRTAVFLHAMWHPEAIRSAQEIARYDKKQVVVVGKMVPRTPEPPEVQAMIVAPCMLTIDSIELAS
>NC_019764.1|WP_015211859.1|60022_60454_-|hypothetical-protein
MTEMPTILNRSDIYRNFPNPYEAVDDDEINKRAEARKKGKLVRVIGKYTQIDARRRQEPPPVYEGIVALMLAEDTAERAAVFLHPTCHPEAIRPAQEIAWYNDRLVVVVGRFVPDSPESPNAVAHLVGPCMLTIDSIDFWTQE
>NC_019764.1|WP_190274486.1|60504_60666_-|hypothetical-protein
MPLSRYAIAELSQDIEWVNRQKSSVGAFVHVLVLKKKPNGEYDVIYTCRKFMG
>NC_019764.1|WP_083888119.1|61114_62314_-|ISAzo13-family-transposase
MKLTEHAKSLYIETAKKLKGTDRRQFMASVVKDLGIGGQTLVERELGWNRRTIRKGMKELKSGEPIVDGFKRSGRKRVETKLPNLLKDITSLVDPHSQTDPSFKSTRLYTRMTANEVRRQLIKQFGYSDEELPSAETIRRRLNDLGYTLKRVLKTKPVKKIPETSAIFEQLEQVNTAADNNPNTLRISIDAKASVKIGEFDRGGKNRTPTIAVDHDFSTQSSVIPYGIFLPEYNELFLFFVTSKLTADCIVDLLESWWQTVKHRFSHIQKLVINQDNGPENHSRRTQFMKRILDFSQQSQLTLQLAYYPPYHSKYNPIERCFGWLEKHWNGSLLDTVETVVNFAKTLTFKDKNPVVTLVETIYSTGVKLSELAMAEIETQIHRLPNLHKWFVEIFAKPT
>NC_019764.1|WP_190274487.1|62785_65182_+|response-regulator
MNDLVAQLLGEATSRIWDRLDNYLKEGVLDNYLKEGVLDNYLKEEVGVAKGEKNYNKIQTGSVNQLSPSQTAGVTIKPNGKRNGSDSPKTILPQQKTNSAFPTPTSTFNLHDFHISPNCQVFILDRSGHLVARNKVTEPKPSISVDSQQRVRTQALQQKVIRLSTEYLLKHYGSLAAINSSQNLNFTASNSRYLLQVRPFENSSSLNWLIVAVVPETDFTGKVQANTRNTILLVLLALVLSICLLLSISLRIEQRLLRLISATEAIAGGDFDSTVSGSGVAELEALACAFERMNSQLKASRQRLKEYSGDLKRQVAQKTKELKQAKIAAESANRAKSTFLANMSHELRTPLNAIIGFAHLLVHSKKTAPEQQSSLDIINRSGEHLLKLINDILSLSKIEAGQITLESNAFDLYSLLNDIEGMFQLKTQSKGLQLVFERSSDVPQYVRTDESKLRQVLINLLGNAVKFAGAGRVKLTVKCLQLLAKKPLSKFFLQFSVKDTGPGIAPDEVSRLFKPFVQTEAGRKSQTGTGLGLPISSSFVKLMGGEIKVKSSVGKGTVFSFYVKVCHATESEVYDRLPQKRVQGLAPNQQIYRILVADDESANRLLLTQILKSAGFVVRFADNGTLAVKLWRKYKPHLIWMDLRMPVLDGFQAVQQIRALPNGSNTKIIALSANAFVKTQELALSNGFDDFVAKPFREAVIFEKMALHLDVRYIYEEESSRKSERDEPAQQLTPESLSVLPRELIEKLYKAAACGDEQAVRLLIEGIPLSEKQIAAALTKLVDNMSLDIISDLTQQNL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_019764_1	1.1\|26910\|37\|NC_019764\|CRISPRCasFinder	26910-26946	37	NC_019764.1	26982-27018	0	1.0

1. spacer 1.1|26910|37|NC_019764|CRISPRCasFinder matches to position: 26982-27018, mismatch: 0, identity: 1.0

tgaacgtcttccgattcttctgaaggcaaaggaggag	CRISPR spacer
tgaacgtcttccgattcttctgaaggcaaaggaggag	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_019764_1	1.1\|26910\|37\|NC_019764\|CRISPRCasFinder	26910-26946	37	NC_019764	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence	26910-26946	1.0
NC_019764_1	1.1\|26910\|37\|NC_019764\|CRISPRCasFinder	26910-26946	37	NC_019764	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence	26982-27018	1.0
NC_019764_2	2.1\|50819\|55\|NC_019764\|CRISPRCasFinder	50819-50873	55	NC_019764	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence	50819-50873	1.0

1. spacer 1.1|26910|37|NC_019764|CRISPRCasFinder matches to NC_019764 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence) position: , mismatch: 0, identity: 1.0

tgaacgtcttccgattcttctgaaggcaaaggaggag	CRISPR spacer
tgaacgtcttccgattcttctgaaggcaaaggaggag	Protospacer
*************************************

2. spacer 1.1|26910|37|NC_019764|CRISPRCasFinder matches to NC_019764 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence) position: , mismatch: 0, identity: 1.0

tgaacgtcttccgattcttctgaaggcaaaggaggag	CRISPR spacer
tgaacgtcttccgattcttctgaaggcaaaggaggag	Protospacer
*************************************

3. spacer 2.1|50819|55|NC_019764|CRISPRCasFinder matches to NC_019764 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.04, complete sequence) position: , mismatch: 0, identity: 1.0

ctgccgcctttgtttgtacctgttcctctgcttccgattctggctgttctagcga	CRISPR spacer
ctgccgcctttgtttgtacctgttcctctgcttccgattctggctgttctagcga	Protospacer
*******************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_019730

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24502 : 84223

Thermus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015179638.1\|24502_25780_+\|transposase	transposase	A0A068A1P5	Thermus_phage	1.3e-50	33.7
WP_015179639.1\|26057_26681_+	hypothetical protein	NA	NA	NA	NA
WP_015179640.1\|26986_27817_+	ParA family protein	Q8JL10	Natrialba_phage	8.2e-06	27.7
WP_015179641.1\|27925_29071_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_150111743.1\|29684_30047_-	hypothetical protein	NA	NA	NA	NA
WP_015179642.1\|30687_31377_-	hypothetical protein	NA	NA	NA	NA
WP_015179643.1\|31542_31878_-	XisI protein	NA	NA	NA	NA
WP_015179644.1\|31865_32312_-	XisH family protein	NA	NA	NA	NA
WP_041623867.1\|32604_33579_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_015179645.1\|33702_34452_+	HIRAN domain-containing protein	NA	NA	NA	NA
WP_190274474.1\|34728_34911_-	hypothetical protein	NA	NA	NA	NA
WP_015179646.1\|36058_36664_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_015179647.1\|36727_38071_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015179648.1\|39206_40826_+	hypothetical protein	NA	NA	NA	NA
WP_015179649.1\|40942_42298_+	replicative DNA helicase	A0A2H4PAV8	Aphanizomenon_phage	1.4e-79	41.2
WP_150111564.1\|54290_55356_+\|transposase	ISKra4-like element ISOni2 family transposase	NA	NA	NA	NA
WP_015179652.1\|59414_59810_+	hypothetical protein	NA	NA	NA	NA
WP_015179654.1\|67139_67394_+	hypothetical protein	NA	NA	NA	NA
WP_015179655.1\|67676_68144_+	hypothetical protein	NA	NA	NA	NA
WP_015179656.1\|71928_72453_+	hypothetical protein	NA	NA	NA	NA
WP_150111761.1\|73845_74911_+\|transposase	ISKra4-like element ISOni1 family transposase	NA	NA	NA	NA
WP_015179660.1\|75006_75462_+	hypothetical protein	NA	NA	NA	NA
WP_015179661.1\|75635_76343_+	hypothetical protein	NA	NA	NA	NA
WP_015179662.1\|76518_76788_-	hypothetical protein	NA	NA	NA	NA
WP_015179663.1\|76909_77092_-	hypothetical protein	NA	NA	NA	NA
WP_041623870.1\|77361_77736_-	HNH endonuclease	NA	NA	NA	NA
WP_150111640.1\|78039_79731_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015176254.1\|82726_84223_-\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

111386 : 174296

Synechococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015179685.1\|111386_112682_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.1e-97	46.0
WP_051041637.1\|112858_113239_+	response regulator transcription factor	NA	NA	NA	NA
WP_083888119.1\|113300_114500_+\|transposase	ISAzo13 family transposase	NA	NA	NA	NA
WP_051041638.1\|114519_114852_+	response regulator transcription factor	NA	NA	NA	NA
WP_015179686.1\|114933_116097_-	hybrid sensor histidine kinase/response regulator	A0A1B0VMK3	Pseudomonas_phage	2.2e-09	27.4
WP_015179687.1\|116093_118028_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_015179688.1\|118111_119176_+	hypothetical protein	NA	NA	NA	NA
WP_015179689.1\|119179_119815_-	hypothetical protein	NA	NA	NA	NA
WP_015179690.1\|120485_122573_-	hypothetical protein	NA	NA	NA	NA
WP_015179691.1\|122894_123116_-	hypothetical protein	NA	NA	NA	NA
WP_083888260.1\|123516_123696_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_150111564.1\|123824_124890_+\|transposase	ISKra4-like element ISOni2 family transposase	NA	NA	NA	NA
WP_015179693.1\|124999_125254_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_015179695.1\|125698_126166_-	hypothetical protein	NA	NA	NA	NA
WP_015179696.1\|126170_127400_-\|transposase	transposase	A0A068A1P5	Thermus_phage	9.1e-54	35.7
WP_015179697.1\|127723_127909_-	hypothetical protein	NA	NA	NA	NA
WP_015179698.1\|129859_131716_+	bifunctional 3'-5' exonuclease/DNA polymerase	U3RK32	uncultured_virus	1.0e-56	31.1
WP_150111746.1\|134768_135716_-	hypothetical protein	NA	NA	NA	NA
WP_015179700.1\|135748_136024_-	UBP-type zinc finger domain-containing protein	NA	NA	NA	NA
WP_015179701.1\|136060_136639_-	hypothetical protein	NA	NA	NA	NA
WP_015179702.1\|136708_138265_-	carbohydrate porin	Q5GQG9	Synechococcus_phage	3.6e-07	42.4
WP_015179703.1\|138432_139095_-	hydrolase	NA	NA	NA	NA
WP_015179704.1\|139257_139956_-	hydrolase	NA	NA	NA	NA
WP_015179705.1\|140439_140943_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_015179706.1\|141093_148131_+	PAS domain S-box protein	A0A2K9L4T9	Tupanvirus	1.6e-09	26.7
WP_015179707.1\|148143_148773_+	response regulator transcription factor	NA	NA	NA	NA
WP_015179708.1\|148991_149549_+	DsbA family protein	NA	NA	NA	NA
WP_015179709.1\|149735_149918_+	hypothetical protein	NA	NA	NA	NA
WP_015179710.1\|149914_150661_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.4e-19	31.0
WP_083888261.1\|150750_151107_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015179711.1\|151242_152142_+	pirin family protein	NA	NA	NA	NA
WP_015179712.1\|153436_153967_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_015179713.1\|154067_154664_+	nuclear transport factor 2 family protein	S4VXZ7	Pandoravirus	3.4e-14	35.1
WP_015179714.1\|154826_155582_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	5.7e-22	30.4
WP_015179715.1\|155755_156703_+	NAD(P)/FAD-dependent oxidoreductase	A0A1V0SIN1	Klosneuvirus	8.4e-15	26.2
WP_150111747.1\|156907_157075_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_015179716.1\|157305_158304_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_041623873.1\|158640_159609_+	zinc-dependent alcohol dehydrogenase family protein	E3SJ82	Synechococcus_phage	1.1e-06	27.6
WP_015179718.1\|159854_160208_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_015179719.1\|160337_161165_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	9.3e-18	28.7
WP_015179720.1\|161334_162231_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_015179721.1\|162288_162483_+	hypothetical protein	NA	NA	NA	NA
WP_015179722.1\|162557_163421_+	hydroxyquinol 1,2-dioxygenase	NA	NA	NA	NA
WP_015179723.1\|163451_163916_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_015179725.1\|164508_165078_+	DUF981 domain-containing protein	NA	NA	NA	NA
WP_015179727.1\|166301_167138_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_015179728.1\|167244_168138_+	pirin family protein	NA	NA	NA	NA
WP_015179729.1\|168130_168544_+	hypothetical protein	NA	NA	NA	NA
WP_015179730.1\|168602_168992_+	cupin domain-containing protein	NA	NA	NA	NA
WP_015179731.1\|169724_170450_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_015179732.1\|170705_171107_+	hypothetical protein	NA	NA	NA	NA
WP_083888262.1\|171503_171671_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_083888263.1\|171719_172127_-\|transposase	transposase	NA	NA	NA	NA
WP_150111748.1\|172134_172362_-	hypothetical protein	NA	NA	NA	NA
WP_150111640.1\|172604_174296_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

181536 : 246055

Tetraselmis_virus(18.18%)

transposase,integrase

attL 211765:211780|attR 252800:252815

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150111564.1\|181536_182602_+\|transposase	ISKra4-like element ISOni2 family transposase	NA	NA	NA	NA
WP_041623921.1\|182842_183235_+\|transposase	transposase	NA	NA	NA	NA
WP_015179736.1\|183255_183789_+\|transposase	transposase	A0A2P0VP61	Tetraselmis_virus	1.6e-07	28.3
WP_015179737.1\|183994_184354_+	hypothetical protein	NA	NA	NA	NA
WP_015179738.1\|184476_185769_-	RRXRR domain-containing protein	Q331Y3	Clostridium_botulinum_C_phage	2.3e-39	35.6
WP_041623875.1\|186302_186824_+	hypothetical protein	NA	NA	NA	NA
WP_015179740.1\|188743_189364_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015179741.1\|189403_189679_-	hypothetical protein	NA	NA	NA	NA
WP_150111762.1\|190480_190939_+	hypothetical protein	NA	NA	NA	NA
WP_015179743.1\|191498_191894_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_015179744.1\|191890_192226_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_015179745.1\|192310_193609_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	2.6e-91	46.5
WP_051041640.1\|193714_193897_+	hypothetical protein	NA	NA	NA	NA
WP_150111751.1\|193901_194102_+	hypothetical protein	NA	NA	NA	NA
WP_015179746.1\|194098_194662_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	2.9e-07	29.7
WP_015179747.1\|194739_195213_+	hypothetical protein	NA	NA	NA	NA
WP_150111752.1\|195390_196812_+	helix-turn-helix domain-containing protein	A0A0H3UZC2	Geobacillus_virus	5.9e-20	28.4
WP_015179749.1\|197191_198235_-	hypothetical protein	NA	NA	NA	NA
WP_015179754.1\|201293_202091_-	hypothetical protein	NA	NA	NA	NA
WP_015179755.1\|202140_202653_-	hypothetical protein	NA	NA	NA	NA
WP_015179756.1\|202645_202957_-	hypothetical protein	NA	NA	NA	NA
WP_015179757.1\|205119_206589_-	ParM/StbA family protein	NA	NA	NA	NA
WP_190274469.1\|206648_206939_-	hypothetical protein	NA	NA	NA	NA
WP_041623877.1\|206892_207279_-	hypothetical protein	NA	NA	NA	NA
WP_015179758.1\|207372_207708_+	hypothetical protein	U5XGT4	Phormidium_phage	1.8e-12	38.4
WP_015179759.1\|207872_208691_+	siphovirus Gp157 family protein	NA	NA	NA	NA
WP_150111754.1\|209186_209375_+	hypothetical protein	NA	NA	NA	NA
WP_015179761.1\|209389_209629_+	hypothetical protein	NA	NA	NA	NA
WP_015179762.1\|209701_210022_+	hypothetical protein	NA	NA	NA	NA
WP_015179763.1\|210129_210762_+	hypothetical protein	NA	NA	NA	NA
WP_041623929.1\|210980_211205_-	hypothetical protein	NA	NA	NA	NA
WP_015179765.1\|211425_211992_+	hypothetical protein	NA	NA	NA	NA
211765:211780	attL	NA	NA	NA	NA
WP_015179766.1\|212037_212265_+	hypothetical protein	NA	NA	NA	NA
WP_041623880.1\|212299_212512_+	hypothetical protein	NA	NA	NA	NA
WP_015179768.1\|212688_212844_+	hypothetical protein	NA	NA	NA	NA
WP_015177634.1\|215362_217021_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.3e-116	42.5
WP_041623931.1\|217145_218723_+	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	1.7e-57	31.6
WP_015179771.1\|219667_220150_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_190274470.1\|220380_220551_-	hypothetical protein	NA	NA	NA	NA
WP_015179774.1\|221006_221351_-	hypothetical protein	NA	NA	NA	NA
WP_015179775.1\|222619_222868_-	hypothetical protein	NA	NA	NA	NA
WP_015179776.1\|222944_223106_-	hypothetical protein	NA	NA	NA	NA
WP_015179777.1\|223282_224617_-	serine/threonine protein kinase	A0A2K9L000	Tupanvirus	4.1e-07	22.3
WP_150111757.1\|224720_225848_-	hypothetical protein	NA	NA	NA	NA
WP_015179779.1\|225813_226029_-	hypothetical protein	NA	NA	NA	NA
WP_150111758.1\|226141_226423_-	hypothetical protein	NA	NA	NA	NA
WP_150111763.1\|226508_226841_-	hypothetical protein	NA	NA	NA	NA
WP_041623883.1\|228266_228968_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_190274471.1\|229043_229208_-	hypothetical protein	NA	NA	NA	NA
WP_015179783.1\|229286_231032_-	sulfotransferase	A0A1V0SAH6	Catovirus	4.4e-09	34.0
WP_015179784.1\|231142_231913_-	glycosyltransferase	NA	NA	NA	NA
WP_015179785.1\|232224_233313_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_015179786.1\|233313_233910_-	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_015179787.1\|233942_235640_-	DNA/RNA non-specific endonuclease	S5W9C6	Leptospira_phage	1.1e-09	36.0
WP_015179788.1\|235615_236665_-	WG repeat-containing protein	NA	NA	NA	NA
WP_190274409.1\|245449_246055_-\|transposase	transposase	NA	NA	NA	NA
252800:252815	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NC_019729

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019729_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_1

33638-33733

Orphan

Consensus_repeat	Method
GCGCGAGCTCAGTTCATTGTCTTTGCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_1

>merge|NC_019729|1|33638-33733|CRISPRCasFinder
GCGCGAGCTCAGTTCATTGTCTTTGCGACGACAGTTTGAATCATAGTCCGAATCAATCTCACGGCGGGCGCGAACTCAGTTCATTGTCTTTGCGAC

>NC_019729|1|1|33638-33733|CRISPRCasFinder
GCGCGAGCTCAGTTCATTGTCTTTGCGAC	GACAGTTTGAATCATAGTCCGAATCAATCTCACGGCGG
GCGCGAACTCAGTTCATTGTCTTTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174012.1\|32794_33529_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223750
NC_019729.1\|WP_015174017.1\|43660_44524_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019729.1\|WP_015174011.1\|31619_32591_-\|sodium-dependent-bicarbonate-transport-family-permease	unknown	unknown	gnl\|CDD\|377582
NC_019729.1\|WP_015174023.1\|50699_51449_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_015174014.1\|34442_36425_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015174016.1\|40533_43383_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|368006
NC_019729.1\|WP_015174006.1\|25671_27990_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|237756
NC_019729.1\|WP_015174005.1\|24154_24526_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174015.1\|36417_40509_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|368006
NC_019729.1\|WP_015174008.1\|29289_29655_-\|DUF1823-family-protein	unknown	unknown	gnl\|CDD\|370156
NC_019729.1\|WP_015174010.1\|31306_31615_-\|nitrogen-regulatory-protein-P-II-family	unknown	unknown	gnl\|CDD\|223424
NC_019729.1\|WP_083888095.1\|45399_45510_+\|transposase	unknown	unknown	gnl\|CDD\|315923
NC_019729.1\|WP_015174007.1\|28300_28996_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367655
NC_019729.1\|WP_015174009.1\|29805_30837_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_019729.1\|WP_015174013.1\|33758_34400_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019729.1\|WP_015174004.1\|23595_23940_+\|NAD(P)H-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|313802
NC_019729.1\|WP_041622289.1\|48935_49136_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174003.1\|22998_23520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377792
NC_019729.1\|WP_015174019.1\|45834_46014_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174021.1\|47820_48018_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174012.1\|32794_33529_-\|glutathione-peroxidase	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	7.57994e-96
NC_019729.1\|WP_015174017.1\|43660_44524_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.88674e-20
NC_019729.1\|WP_015174011.1\|31619_32591_-\|sodium-dependent-bicarbonate-transport-family-permease	gnl\|CDD\|377582	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily. Family of bacterial proteins that are likely to be part of the Na(+)-dependent bicarbonate transporter (sbt) family. Members carry 10TMS in a 5+5 duplicated structure. The loop between helices 5 and 6 in Synechocystis PCC6803 is likely to be the location for regulatory mechanisms governing the activation of the transporter.	7.20518e-149
NC_019729.1\|WP_015174014.1\|34442_36425_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.27283e-23
NC_019729.1\|WP_015174016.1\|40533_43383_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|368006	pfam04577, DUF563, Protein of unknown function (DUF563). Family of uncharacterized proteins.	9.54631e-55
NC_019729.1\|WP_015174006.1\|25671_27990_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|237756	PRK14559, PRK14559, serine/threonine phosphatase.	2.83842e-75
NC_019729.1\|WP_015174015.1\|36417_40509_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|368006	pfam04577, DUF563, Protein of unknown function (DUF563). Family of uncharacterized proteins.	4.14953e-47
NC_019729.1\|WP_015174023.1\|50699_51449_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.05291e-37
NC_019729.1\|WP_015174008.1\|29289_29655_-\|DUF1823-family-protein	gnl\|CDD\|370156	pfam08853, DUF1823, Domain of unknown function (DUF1823). This presumed domain is functionally uncharacterized.	2.21958e-78
NC_019729.1\|WP_015174010.1\|31306_31615_-\|nitrogen-regulatory-protein-P-II-family	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	2.30869e-07
NC_019729.1\|WP_083888095.1\|45399_45510_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.72983e-08
NC_019729.1\|WP_015174007.1\|28300_28996_-\|hypothetical-protein	gnl\|CDD\|367655	pfam03783, CsgG, Curli production assembly/transport component CsgG. CsgG is an outer membrane-located lipoprotein that is highly resistant to protease digestion. During curli assembly, an adhesive surface fibre, CsgG is required to maintain the stability of CsgA and CsgB.	5.22229e-28
NC_019729.1\|WP_015174009.1\|29805_30837_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NC_019729.1\|WP_015174013.1\|33758_34400_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.63496e-18
NC_019729.1\|WP_015174004.1\|23595_23940_+\|NAD(P)H-quinone-oxidoreductase-subunit-M	gnl\|CDD\|313802	pfam10664, NdhM, Cyanobacterial and plastid NDH-1 subunit M. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 sub-complexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms. The three subunits of NDH-1, NdhM, NdhN and NdhO are essential for effecting cyclic electron flow around photosystem I, by supplying extra-ATP for photosynthesis in both plastids and cyanobacteria.	2.18643e-71
NC_019729.1\|WP_015174003.1\|22998_23520_+\|hypothetical-protein	gnl\|CDD\|377792	pfam07209, DUF1415, Protein of unknown function (DUF1415). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.	0.00236159

>NC_019729.1|WP_015174012.1|32794_33529_-|glutathione-peroxidase
MLTNHEGQRVPKVTFRTRKDNEWVDVTTDDIFAGKTVVVFSLPGAFTPTCSSTHLPGYNELAKVFKENGVDEIVCISVNDTFVMNEWAKDQEADNVTLIPDGNGEFTEGMGMLVDKTDLGFGKRSWRYSMLVKDGVVEKMFIEPEEPGDPFKVSDAETMLNYINSAAAKPKVVSLFTKIGCPFCAKAKAMLSKHGLDYEEIVLGREITTRSLRAMTGATTVPQVFIDGKLIGGSEALESYLTVA
>NC_019729.1|WP_015174011.1|31619_32591_-|sodium-dependent-bicarbonate-transport-family-permease
MDLSLVASNILNPPILAFFMGMLAIFLKSDLEIPAPIPKLFSLYLLFAIGFKGGVELSKSGIDQQIALTIVAAMLMSMLVPIYTFLILRIKLDSYNAAAIAATYGSISAVTFITATSFLTAQGIDFDGYMVAALALMESPAIIVGLILVSVFGGEEGKREIVWPEVLQEAFLNSSVFLLIGSLIMGIMTGEHGWQVMSPFTQDLFYGVLTFFLLDMGLVAASRIKDLQEAGIFLICFAILIPIVNAVIALLIAKLIGMPQGDTLLFAVLCASASYIAVPAAMRLTVPEANPSLYISTALAVTFPFNIIVGIPLYLYGINMFWR
>NC_019729.1|WP_015174010.1|31306_31615_-|nitrogen-regulatory-protein-P-II-family
MESVKRVEIIAHSVELGKILDGLDKAGVPGYSVIRDVAGKSTRDHVSRDSSMTALDNIYVLAFCSPAQVSAVAENIRPVLNKFGGSCFISDAVELLITRCVG
>NC_019729.1|WP_015174009.1|29805_30837_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAALKVGINGFGRIGRLVMRAGINNPNIEFVGINDLVSPENLAYLFKYDSTHGIYDGEVESKPDGIVVDGRFIPCTAIRNPAELPWGKSGADYVVESTGLFTDFEGASKHLTAGAKRVILSAPTKDPEKVATFLVGVNHHKFDPAKDTVVSNASCTTNCLAPIAKVINDNFGLEEGLMTTVHAMTATQPTVDGPSQKDWRGGRGAAQNIIPSSTGAAKAVTLVLPELKGKLTGMALRVPTPDVSVVDLTFKTAKETSYKEICEAMKKASEGELKGILGYTEDAVVSTDFKGDARSSIFDAGAGIELNSKFFKVVSWYDNEWGYSSRVIDLMLSMAEKDGILNN
>NC_019729.1|WP_015174008.1|29289_29655_-|DUF1823-family-protein
MSELPPLNNETIWAILNEEIDDAAVNRLVWQYLGYRCDAETGKWNSAGVAPEWRQEYPEPPDFIDSRPATVKLTRSTPPENKQLLKEKLGFKGYKIGEFGPRQTRRATMANWLMGFIESGA
>NC_019729.1|WP_015174007.1|28300_28996_-|hypothetical-protein
MKTTTISRLTSISLATLMLAGVSVNATATPASTQPPTQLAQATAKKRLVVMDFDYGTTNSYYTSYRGVGAAKGISELLINELVNNGTYTVVDRSKLEQALKQQNRSGAMDAGTAAEIGKQLGVDAVLIGTITKFNIDKQSGGGSFMGIGAGSQKTKATVQIDVRLIGTASGDILATAKAVGEADQSDSNISVRGISGNSGNSNEDSLLSAAVDKAVSQMVTKLAEVSKKLG
>NC_019729.1|WP_015174006.1|25671_27990_+|protein-phosphatase-2C-domain-containing-protein
MQNSVAKHYLWALGEGIKGCKPGDLIAGRYLVKRDRLLVDTQPEHLPELPEDIPSVVTPYLRLFAYQLHVPQVYGLVSSKMSKLSGDIWLLENGPILKVTESLMPELADSWKGSAAMRQLNWLWQMAQLWQPCIAQGVASTLLTPELLRVEGQLVRFLELQPDRKPPHLSQLGKLWQQWLEDAHPAIANFLRQLCQQMVAGQVRHGEQLMGQLDKALAKCGRFYDRHVEIATGTDVGRSRAHNEDACYPPSGTLFAGSPGAEACAIVCDGIGGQDGGEVASEEAIGVLRDKLQQMPLHQANWDPLSLTSKLERAACAANDKIASRNDSEHRQGRQRMGTTLVMGLAHIHELYVAHVGDSRAYWITRTGCYQVTLDDNVACREVRLGYSLYRDALEQVAAGALIQALGITSSNTLHPTVQRFPVDEDCVLLLCSDGLSDKDRVEECWETEILPILDGSINLAKARDRLIEIANTRNGHDNVTVALIHCQAHLREDGNTFTELSVAPLDTPIELISDSEDMPTDLTESTSLGEGNSPGKTLLLQQEKSKSSFSLLLKILFLLGLGGVFAYFFIPPVGRAIDTAGESIFGKRGLINARSTPEKTVESVPSPVKSLETGSFIEIKSSGAGKVEKEGESLNLRVAIGELTVKGVVPAGSFLQVTNKQLTPQGNWLELKVCSIPESVRSNSPKPESNKDFSTVSKPPQNPSPAVATPTPSPSPAVKPTVEVESAKLQAGEIGWIQEQDAISKVVPNLVLNPTQQGKCLVNSDSNPNAN
>NC_019729.1|WP_015174005.1|24154_24526_-|hypothetical-protein
MPPHDPSTFPKNLPDPKLLPAVEIDEILTSIQHSHSFYYKVMNLEVWALVETLDGLFPGAWGQFMANRQLAVKQFLERERVPKTQVDAGEAGEKSDRSWKKEEAGNQESGSQESEVTNKQEEE
>NC_019729.1|WP_015174004.1|23595_23940_+|NAD(P)H-quinone-oxidoreductase-subunit-M
MQLKSTTRHIRIYTAILEDNELVPSNDLLTLDIDPDNELNWNDESVKQVQAKFDQLVDAYEGEDLTEYNLRRIGSELEHLVRSLLQKGQISYNLNGRAVNYSMGLPQVDSKVHL
>NC_019729.1|WP_015174003.1|22998_23520_+|hypothetical-protein
MNQSDTEIIESTLRWMTEFVELPHPVFSDLPICPFTKKARLANQILFKIERFSALTEFDRDSAIMKSIYEFYNSEYEIMLVINPEKTAISAPQTKELIDKLNDRISELGLLAFHTHPEEDFNIDGLHTRRMPYPGFTVQVNSKLKPASDALEKTEYYKNWTAEQLKYFGIPRN
>NC_019729.1|WP_015174013.1|33758_34400_-|Uma2-family-endonuclease
MLTSELDTLLKEQALQRQDPEDRYITDSANWEQYETLLNRIGDTAGYRVTYLDGVLEIMSPSRRHESRKTGIGNLLEIYFVEAEIEYFPFGSTTLRQEEKSGGTEPDEAYCIGTDQEFPDLVIEVIVTSGSINKLELYRRLNVREVWFWRNDRFSIYHLREEIPVEFAPNCGYELITQSELLPGIDIDMLRECVKNPHPLAAAKEWRQNCRPT
>NC_019729.1|WP_015174014.1|34442_36425_-|tetratricopeptide-repeat-protein
MDNDYHDLGNSLQESGRFDEAVAAYKKAIELNPDFSWSYHCLGDVLLKLEKWEEAVAAYKKAVELNPDFSWSYHNLGDALLKLRRWEEAAAAYRCEIALNSDFAWSFCNLGDALTKLKQWDEAIATYLKAVEIDGDLPGIYDKLGYALRQTESDFNLVLEQSQLQITPKNGEFYLQLGKNLAKYDRPKSAIIIYNFLLTNMPSCAGLSGELEELLQQQEKCVREALEEDRALASSRATVAQKPDDCWSYYNLGAVLSHQKYWEEAAAAFFQALKINPDLPWWFYYNLWEVFVRQNKLDEVEKLCREVVAAKPEAFWPYLNLGEALTRQGKIAEAIDFYRTVSYKQSFASIISKRTGKMPVPQADTGKMPVPQADTGKMPVPQADTGKMPVPQADTGKMPVPQQETGKMPVPQNWNLKPVKVPNFIIIGCQRCGTTSLYTYLAQHPQILTPIKKEMDFFSWHFDRGIDWYLAHFPPMPSGEQFVTGEASPSYFDSREAPERLYSLFPEAKLIVLLRNPVDRAISQFYRLTGLNWEARSLDRAISDEVERLNQNPEYIIGEEPGNYLARGRYIEFIKKWRTFFPPEQLLILKSEDFYAGAATTLKQVLEFLDLPEYQLSEYQNANPGSYQPVNESVRDWLSDYFRPYNQEVEEYLGRQFDWE
>NC_019729.1|WP_015174015.1|36417_40509_-|tetratricopeptide-repeat-protein
MPSIEKMEKAAVDLSRQAEVYLAEGKLNEAVAACESALKIEPNLGAACQTLGKVMQVRGEIEQAKQWYEAAIDRNPNLPEVYANLGILYSQGKQWEKAIAHCEKAISLAPHFAAAYRQLARVWTQLEKREEAADFWYQAFNIEPNWATAEEHVTLGNSFVELGKCDRAMECYSRAIKLNPQLATAYHNLGEMLVREKRWDEAIANYRQAIAINPNSFESYHSLGKTWAERGELNRAIACYNKSLELNPNYARAYVGLGNVFAQKRDFDAAIKCYRQTLEINDNSYWAYNCLGDALAQKQQWQEAIICYRKAIAINQNIPWFYVNLGIALTCEQSWDEAVSAYLHAVQLEPNLTGINQRLGYVLRKRSESGLDSTIATYCQAIEVLASGKIYHNLLGIELDGAEFYINLGNSLAKQKQLEGAIVFYSMAVQIEPNAAEVVAQLNDVRAKQQELYAQIAAYRHQIEIDPSNSKAYNDLGNILPQLGELEEAIICHQKASKLRGWPECAAKDYQFTQDWFTHNIPIWQRHLQEFTGIADFQVVEIGSFQGMSACWLLDKILTHPTAKITCIDLYFQQHFKGNIVKTGAADRVIELEGYSQDLLINLAAEYYDVAYIDGCHKPTSALQDAILSWRLVKVGGLMIFDDYEFTFPDSPEQDTKIGIDVFLEMFGSQLEVVHKGYQLIVKKIGNQSLGEEQTLLSLGWEKLGDIAANAGYLDEATARYQTAIKIKSGNYLTYHKLGKALQEKKQLDEARAAYQGAIELNPNFSWSYHFLGETWQAMEEHDEAAAAYRKAIELNPDFCWTYNNLGDVLMELSEWEDAAVAYRKLVELNPDFCWSYERLGKALVALENLEEAAAAYRKAIELNPDDCWLYNSLGEVLESQENWPEAAVAFGRAIALEPEHSWLYKKLGDALRNQGELERAIAIYEKGINLDPKSCWCYEGLGLSLMAKQQWEPAIANLVQALQIKPDLFEAYDNIGYALEQQGEADESDRAKCRNQILPLSVLKKYCGFTEDLTVAAESNPHLTCIDIHPASQINLSDSKTIDSSRRFWEHQSHSRKAFVAVLPNGRAWADVVTTAVITSDNKLVPDISMGCAELVITSDKLPPAEHLDGNVAFLSARWGGAAYFHWMFDVMTRFDLLQRSGLIETIDKFVVNARDSSYQTETLDTLGISQDKLLESRCNLHITADKLIVPSIFYDGSGAVSKWKCEYLKQTFFNEKQLLNTDYSERIYITRQQASYRRILNDEEVIKYLEKIGFRSVKLETMSVAEQASCLAAAKVVVAPHGGGLTNLVFCSPGTKVIEIFSPLYVPHCYWMISNLCNLEHYYLLGDLVDDQTQKYPGHKDMRVDLNSLEKLLTIAGVLHG
>NC_019729.1|WP_015174016.1|40533_43383_-|tetratricopeptide-repeat-protein
MSTEEYIRQARIYLNRGKLTEAIEFCNKAIELQPFSPSAYTTLGEILEAQGDPTAARDAFVQALEISPQFFLAHAYLGQLYSDYAWLDEAVFHYRQALDLKPDWAAVHYNLGNVFHKQGNLLGAIDCYRKAIAQKPDYLDALYNLAVVLDENSQLEAAMDTYRQAIALKPDYVEAYSNLGVILLKEDRAAEAIEVYQRAIEIKPDWATLHNNLGQALLDKSPERAIASYLTAIELEPDMVLAHYNLGKAWQLQGEHSAALACFERAIEIDSDYISGYTDAGFSLMVLGKIAEAMPYFERAIALKPDFVEAYCRLGDRRRVAAVEDDELSRAIAACDRFLTALTGRKKEEGSSATDFVADVTDVKDRRKKEEKETIPNAQFPIPNSQGPIPNAQLPIAEICDNLAEIYLHLGNALTEYGGHESAAAYYQKALQIQPQNAEIYWRLGNSLAQQQRLGAAIAVYRMALTIQPALPQVYFELAKLLEKQGRWERAIDYYQKVLELQLQGYGEQKEWKKQSFILPDNTSIKPPKGIYLSSWDWLVNAKLDADNYVEFFWQPAPEASAENIPNSQFARSNSKLANSDCTGLTCGLCLQRLSKWFDPVHLGWGVCRLSNSQPIPVQSPKTFVAAIPNGRVWIVPQENYWLICKAIAVITPDNYLLADVSRDYPGFLPGCEKHDVRKHSVFQLESFPALKQIDGSVAVLSGLSGNVYFHWMVDVLPRIELLRHSGRDLAEIDWFLVNSCQHQFQRESLRILGIPEEKVLESDRLPHIQATELIVPSFAGYLGWPSGWAMDFLRREFLKGIIPSSLYPKRIYISRSKARYRRVLNEEDAIEVLEKFGFVSILPESMSLAEQIAHFYHAEVIVAAHGSGLTNTIFCRQGTKVIELVSPHYISHYYWGISQYLQLEHYFLAGEAFECYPIRQLMYQNSLTEDILVNLSSLKRMVEVVGLS
>NC_019729.1|WP_015174017.1|43660_44524_-|calcium-binding-protein
MTQVTNPTQPASSLPGGGGGGGFTVIGTTGDNRLSGSPGNDIILTFGGNDVVAGGSGNELIITGGGNDTIGAGDGNDTVFSGSGADVVAGGTGDDFIFAGKGDDLVDGGDGNDLISGDRGNDTVLGGSGNDTVFGGQGNDVVSGGDGNDSLFGGKDNDTVNGGAGNDFISGDRGSDVLTGGAGSDTFYFFSSGGDYGVDTITDFTPAEDKIRLKSGGVFAGLGTSFEASEFVVVSNFNEATPGTATTNKLVYDPTSGKLFFNGTNGVLTVAQLQPNLTITSNNFELF
>NC_019729.1|WP_083888095.1|45399_45510_+|transposase
MDNLPVHHAEAVNFLMVSIGSQVKFLPRYSPDLSPI
>NC_019729.1|WP_015174019.1|45834_46014_-|hypothetical-protein
MNEVSEKPIYRVLNLLSLLALTYYAATSIIYIFESDAHIYKYDSQSNSNASPAQLTAHR
>NC_019729.1|WP_015174021.1|47820_48018_+|hypothetical-protein
MQALTLKSDGAIAELFYQVTHSGNLTRTESQGLRVLCHSALSEDARDAVNRLLHAIRRGWVRISD
>NC_019729.1|WP_041622289.1|48935_49136_+|hypothetical-protein
MKTQTLLPQFTIAELVFQVYHSGLLTPTHRQQLKTALLNDCLTEEDQTAINRLLHAVRRGWLKVVD
>NC_019729.1|WP_015174023.1|50699_51449_-|pentapeptide-repeat-containing-protein
MDAEELLRRYAGGERVFHKVDLSGAHMSRTNLRDIDLSHANLKGANSIGLTLYRANLYQADISQANLSQANLMSANFGECEAVGANLSGAILRSVVFSGADLTGASLRGADMRDANLQGAILIQVYAVNANLQGANLTEVKLCGINLSKANLTDANLTQADLSRANLTQANLSWANLTEANLEKADLKGADLSGANLSCANLHQADLSGVSLKGANLRGANLHQASLRGTNLDEANLREAMMPDGTISD

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Crispr_ID: NC_019729_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_4

378303-378464

Orphan

Consensus_repeat	Method
AATCAAATATCTGATATTAGTCCCTTGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019729_4

>merge|NC_019729|4|378303-378464|CRISPRCasFinder
AATCAAATTGAAGACGTGAGTTCGTTGAAATTTATGAAGACCTTAAAAGTGCTATCCCTTGCTGACAATAAAATTTCTGACATTAGCCCGTTGAAATCTCTAACTAAACTGACTGAACTTTATCTCAGCGAGAATCAAATCTCTGACGTAAGTCCGTTAAAA

>NC_019729|4|4|378303-378464|CRISPRCasFinder
AATCAAATTGAAGACGTGAGTTCGTTGAAA	TTTATGAAGACCTTAAAAGTGCTATCCCTTGCTGAC
AATAAAATTTCTGACATTAGCCCGTTGAAA	TCTCTAACTAAACTGACTGAACTTTATCTCAGCGAG
AATCAAATCTCTGACGTAAGTCCGTTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174277.1\|368686_370051_+\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719
NC_019729.1\|WP_015174276.1\|362816_368666_+\|DUF4114-domain-containing-protein	unknown	unknown	gnl\|CDD\|173787
NC_019729.1\|WP_015174290.1\|388159_389569_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015174270.1\|353209_353425_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_019729.1\|WP_190274315.1\|378861_379020_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174273.1\|355679_358550_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|379818
NC_019729.1\|WP_150111469.1\|387856_388066_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174287.1\|385260_385827_-\|dihem-cytochrome-c	unknown	unknown	gnl\|CDD\|378226
NC_019729.1\|WP_015174282.1\|379134_379359_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174288.1\|385847_386756_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293801
NC_019729.1\|WP_015174289.1\|387277_387790_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|238239
NC_019729.1\|WP_150111468.1\|372256_373393_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174286.1\|384320_384878_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NC_019729.1\|WP_015174284.1\|379781_382907_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NC_019729.1\|WP_015174280.1\|373862_377114_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NC_019729.1\|WP_015174272.1\|354802_355426_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174278.1\|370845_372003_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380786
NC_019729.1\|WP_015174271.1\|353591_354368_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174291.1\|389712_391017_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015174274.1\|358656_362178_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174277.1\|368686_370051_+\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	1.92781e-09
NC_019729.1\|WP_015174273.1\|355679_358550_-\|zinc-dependent-metalloprotease	gnl\|CDD\|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	1.35281e-93
NC_019729.1\|WP_015174286.1\|384320_384878_-\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	1.81943e-70
NC_019729.1\|WP_015174270.1\|353209_353425_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.06493e-22
NC_019729.1\|WP_015174276.1\|362816_368666_+\|DUF4114-domain-containing-protein	gnl\|CDD\|173787	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	3.32941e-26
NC_019729.1\|WP_015174287.1\|385260_385827_-\|dihem-cytochrome-c	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.34827e-35
NC_019729.1\|WP_015174290.1\|388159_389569_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.7982e-57
NC_019729.1\|WP_015174288.1\|385847_386756_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293801	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain. Myxococcus xanthus Tar3 may function as an ammonium regulator/effector protein involved in biosynthesis of the antibiotic TA. Some are members of this subgroup are annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.54214e-114
NC_019729.1\|WP_015174289.1\|387277_387790_-\|inorganic-diphosphatase	gnl\|CDD\|238239	cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.	3.53957e-81
NC_019729.1\|WP_015174284.1\|379781_382907_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NC_019729.1\|WP_015174280.1\|373862_377114_+\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.40835e-17
NC_019729.1\|WP_015174278.1\|370845_372003_+\|hypothetical-protein	gnl\|CDD\|380786	cd20216, PFM_HFR-2-like, pore-forming module of wheat HFR-2 toxin, FEM32, and similar aerolysin-type beta-barrel pore-forming proteins. HFR-2 is a wheat cytolytic toxin which may normally function in defense against certain insects or pathogens. The Hfr-2 gene is upregulated in virulent Hessian fly larval feedingdouble dagger. The HFR-2 protein may insert in plant cell membranes at the feeding sites and by forming pores provide water, ions and other small nutritive molecules to the developing larvae. This group also contains FEM32, a flower-specific lectin-like protein from the dioecious plant Rumex acetosa, which alters flower development and induces male sterility in transgenic tobacco. It has been suggested that the FEM32 gene activates some form of programmed cell death (PCD), a process that could be mediated by the action of its lectin domains for binding to specific glycoproteins on the cell membrane and facilitated by the formation of pore structures in the membranes and the subsequent leakage of the cytosolic content through its pore-forming aerolysin domain. Most proteins belonging to this group have N-terminal agglutatin (also known as amaranthin) lectin domains; most have two agglutatin domains, in combination with one aerolysin domain. Members of this group belong to the aerolysin family of beta-pore-forming proteins (beta-PFPs). PFPs are generally secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores harmful to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel, are found in all kingdoms of life and many are bacterial toxins. In addition to having a role in microbial infection, they have potential as biotechnological sensors and delivery systems. They share a similar monomeric architecture, with a variable membrane-binding domain and a structurally conserved pore-forming region. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	0.00485396
NC_019729.1\|WP_015174272.1\|354802_355426_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.60805e-30
NC_019729.1\|WP_015174291.1\|389712_391017_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.86202e-59

>NC_019729.1|WP_015174280.1|373862_377114_+|S8-family-serine-peptidase
MAGDRQYAKDNNILIVAAAGNEGTLLCVLGQASTEFDNIITVGASDNNNRAAYSSYGGGLDILAPTSLTQTAESSTTETKQGTSIAAAKVTNTIWQMWAANPSLNYQQIKNILLNTAKDIDVPDWDERTGYGILNPELAIATAIETIPAIPVLAAAKHLTKSLIDADANPSNTPNNTAPKPSERATATTAPGTPKTTSTSTGNSNEGTSSYTTEVAPYTTTSTSSSNGTSTTNSYTNSNLSNTESSWDKSRVKTNTKGNSFNESTSDSNTSASTYTSKSFSQNSLENKNQSQQNYSRVKYEGTRNDQSSSNQKSRSSSNYTTPSQTTNTTAESYRNSFSQSDSKYGTGYAMNNGKRQDDWGSKSTSNTRNTSSTGSSVNNSSTQIQGKANWTNSSNNNSSLNTHNGEESQVNRSYSESNSTSGFSKNNNSSDNYSVINSTWDNTTTDGKAVGSNSRDVYSEGNSNSNSSYDDGKTKNTSNRDTYTVNQSEQTNSSNGPSYWQNNRGNNYSVTQTNDTQNYKNGPSTSSHNRDTYSVSKSKSSSSNSSGKVSSKNEQENYSENHAQWESEYKADTYTTQSNSDESTITATKSNSSTEGSNSTSSNSSDTSTTRNSQTVTTYKDGRKTENGSSTYQKWSSESTYDSKGVASSVSKYSSWSSSYSNSYFKGGYSWTETVSGYDSESVTKAGVSTSNGNSWSWTRSGTVWDDGPNNWSESWSKSSWKDGKYAPGESEVTRGSFDPKGTQTQTNNLPEFGEAPRLNKAPKQQVPIDFQKPPKPSDDIWQLPPRTFTDTNPPEAPNFPDNWSAGSGGGNPKDSDVDIKAAIDYNNAQGYSKDAIRLIQRVVGAGQTGVFGEDTVRKIANWQSAHRLKRDGKVDSNTLWSIVTELRMRNQPLDALLLSRYVKTRQYVTDANRIIPTGYGPSGRTPGSGDAQSIVETLKKNRQLTLSGELKTVGDATTEYNCHGFTFLGGAEWIKNNSDVENIIKDNGYSVTSKPSVGDVVIYRDDNNKIQHSGIVAAVSGGQVTRVISKWAMYGLYEHNLKDVPLSYGQNTTVYKSNRTSGNFPQGLGAGRPGNHLLRPR
>NC_019729.1|WP_150111468.1|372256_373393_+|hypothetical-protein
MKAINCHNFQIWTIAFIEWNNSIKEDIVELKPLNAARIISGPGPKSFPARPYIKTYASPGGLASTVYKGDDETMPIALWVGDTARLISLSETPLDLSARSDGGVWISTHQTLLFHYDRAGALKHRVNLPGTNIVGVDGDAVWVMTDEKAWFVNVNGDVRGSYPWKGFNRSAGSKQAICQLERDKIRRIQCLEPDGSKHFVNISLPKSPSGKLLFFSDDKLLTGSIGSGDLGYYSTGGIAADLTIENAGMTGSGDAFISMRTDDDLAEVCLTKGTGQRFALKYKIPSFPLPVILSVLAVEGDRTLVYGADRAVWYKGSQIEKSFTVDDNVYRKEIFPHHWRTATNFVTANSSDGTIIISTSGPTGMALIGMRWHPEPQR
>NC_019729.1|WP_015174278.1|370845_372003_+|hypothetical-protein
MRTRNGQTVTVYKDGRKDETQTSSYERWWSDSNTDKGVTTYTSGSSTWSSTYRRTEFKGGYSWSETISGTNTESVTKGGVTTSKQTNWSWTRSGTVWDDGRNNWSESWSKSNWENGRSVPGESETARGSYDPKGTGTQTNNLPQAGEAPRLTKPPKDILELNKQPKYKPQPSQEFYELPIANPEIEKKFPGDFFAGNPAPRKPTFKEQIEKLLKSGAIANYNQIVGLIIQNNSLEDLRSVVGDVGMRTLIVDKFRQKPEMATAIMAALLKGMQRWQNPAPNDFVLHFDVDKSSDPMSYDANMNCWEMILYAAFLCGQITTSQIREFFKRAKYGPGFFSGMPMMGYDESLHSMSLYPAANNRQQSGPYNQDNFFFIELPIKEIQIM
>NC_019729.1|WP_015174277.1|368686_370051_+|WG-repeat-containing-protein
MSLVKRLRVLFYLALVAVFLIMTQLASSETSKSDNEKYGLIDKNGKYVVEPQFDGIDNFQEGLAEVMVDGKIGYIDRTGQVVIPFQFEWSTESFSEGLAVAKLKGSEKVGYIDKTGKYVIPPKFDRADSFHEGLAVVVVNYKYGYINKQGSYVIPPKFDYATEFREGIAVVQSAQKYGLIDRTGKYIAPPSFDHIHNSDAREGFSTAAEFKDGLMRVAVGGKLCYRGGVAGGKWGYIDRMGKLVIPLKFATVGEFYNGRAKVSMSALDCEAGSPIKWDYINQSGEYITRLLFDDAYNFSEGMAAVEIGGKSGYIDLSGKLVIPPQFISTREFSEGLAAINSSENGLYGYIDKTGKLLIAPQFNWAENFLNGSAMVQVNDKQGIIDKTGKYLIEPKFDLVSEFYEGLARVNLNEKWGYIARTGKLVIDVKFDSARDFDRGIAIVGVKQKTANKNS
>NC_019729.1|WP_015174276.1|362816_368666_+|DUF4114-domain-containing-protein
MSPIEASTPKLTANISLIPDIPEELQLANSTNNYYSPPKNLLTTNETSSTNSSIELLSSNNQILDNSPETPPQQAEIDAFILNKDSTPTTNNIPEKPQTSTTQTDAITGDTAKPATQNNISFDSGIFQADETGKILFDYLSDGGRYQGELAIISLTGMQEFVPDSEAFIREAARRALSNSSLGYIAISDITEAAKFSSFEGENNFNIGEYRGIKTFAMTPGDELGIIVVPNGTIQEAYNNPAIGGDKKPLFSMATANSSDAFQRGQIAAVANGGSIFVMEDMGIGEGSEADYNDIIFSLKGATPKVISMDDLIAKNSDWRTSEKGKELIGDAAPKTETKLEDKKADTTSATNPVETKPENSPATETKNPTVSETPNSETNPVETKTENSPVIEDKQPTVSEISHSETNPVETKTENSPATETQNPTVSETPNSETNPVETKTENSPVIEDKQPPVSENIYFPKNPVETEIDFITGDTIEKPVFIQPEKLEIPVIPAESTDILTGEMENTSPTPIDSLENAGETADNLPLISPDEISTLWESLNSILAQQFPNIPETESSQNHQPSASEYSEYIVTDSQTIIPEIAVTENYDSQPSENITADSENQPPTTIGEFVNPDFEWENIAITPEILSDANNQPDNSLHIIPDSEIATTTDSNSEPTISEYTITDTETQPEITPNLPQQNQPLIGIIDTGFVANNPNIDYSQIILGKDLIDGDNNPLLQPNEGNQHGNTILDIINDSSNQSDTKKSTPIWLGRATGSGNWYQSLIEFVDAAKAAKQPNAVVNLSFDLTQINPDGTQTTRHKLTAEETAALKYAKDNNILIVAAAGNEGNLVSALGQASTEFDNIITVGASENNYRAGYSSYGEGLDILAPCDIPQTAEAATTETKQGTSIAAAKVTNTLSQMWAANPSLDYLQIKNILLNTAKDIDVPDWDERTGYGILNSESAIATSAETIPTIPVLAAAKLLTKPLIDVGANTSNSPNSTEAKPSERATATTAPGTPKTTSRSTGDYNVGTSSYTTDLAPYKTTSTSSSNGTTTTNSRILSSLSNTESSWDKSTTKTNHKGESFDESTSDSTTNAVTYTSKSFSQNSTENKNQWQENRSRVKYEGTRSDSSESAQKSRSSYDYTTPTYTRYDASESYRNSKSQSNSRYGTNLSIYNGNRQDDWGSKSTTNTRTTNGNNISTSKSATQTAGNAKWTNGSNGSSSNNTHSGEETTVSTSNSTNSNSSGFSKSSNSNDGYSVTNSTWDNNTINGVAINSNTRDVYSESSTNNQSSYDDGRSKNHSYQDTYTVNQSEQTNSSQGSSYRQNNRNNNYSVRQGNDTQTYKHGPQTSSRITDSYSVTKSDGYSANSSGKVTSKNNQESYSENFVQHDSEYKIDAYTTTTTGDEQTITSTRSNSSNDGTNNASSSSSDTVRTRNGQTVTVYKDGRKDETQTSSYERWWSDNSTDKGVTTYTSGSSTWSSTYRRTEFKGGYSWSETISGTDTESVTKGGVTTSKQTNWSWTRSGTVWDDGRNNWSESWSKSNWENGKSIPGESETARGSYDPKGTGTQTDNLPKAGEAPRLNKPPKNVVDLNKQPKYKPQPSQEFYEQPASYDKKFADNFPTEDPYAAVPPPASWPPKDIGSYWLSYTGTLKSSAERRKIFQDIIKNRSIQKVYMNALSVGGTTFSYGGGMPITGGDIFAEFKEELDRYNLAHPNNRRTIDVIGWFEGTGLAASTSPMYKAAQRANAVLGLKGDGGASYVDLVHPTVWGELQNIAKDFISKHGGLVKEIIFDDRLGIPKAAEADVINLHRATIATDGGPGGKSWIQRALTKNLTNLKNALPSTTFSFSGNLPAVAFEHQNQELAKWLADGIINGGYNLQFYKNGSNYPVFVNDYNTYVPQMLRLLNQNKNRFSVSIGYYAQKEYLKRQELIQQISFLRNNKVASLLPSQIIGFDYRTIRDIQQ
>NC_019729.1|WP_015174274.1|358656_362178_-|hypothetical-protein
MLNANGSILTDNRSTASQWAGEALGLPEVQVQARLRGNHLHILCEAAQCPSQELVTARFTSALEQTDLTRLLPDRPKIYQLFLCGRKLGSRQNDWTVRLDCSSPKRQQQPQQPEPKVAEVPPPASSPTYEPPASPKRGGFFGRFKNNNQKLKQTPKPVETAAPPPQVREELDFDAESLPVASRIQYPEAFETSPVTIDTSAAATREAFSSTVPPQQKANRGAVALIQSPESDSGEGDRGGTLTVSPETLARRGYPDAIASYLSEILGPMGVSVKVSIREKELKSSRETLPVNAPENIKPKERRLLVLCESAYSPDPSLLAEPIAGRLRKLQLEDFREALIASQVSGEAKPDWLLRVDLTSPDKILKEWARWGDVQSIAKLLNQHLAASRVEVRATLKEATLHLFCSKTAKKGQKPKRQEYPDKQQTTDAIAPLLASFAPQGIRAATIYGVEPAKDSQAAPESPVWIDWVDLPAAHHPDLAPSTRTLAIEGDQLALTFLLNRLLNPNLRRKLETGGIRAVVLQKANVLHVMTEALTCPSQSKVGPPVAKFLRHLEIPGVAGVRVYGRRAGQKLPLWRYAIDLRTAVDEESATAPAPAPSQVAVLAKEPVPEFAPVEDGSFSGLGDNLVFDAPMPNSWRPRFKIRLPGYNLGEQLVQAAVQPLVASGLFVPNDGLSTNAAAPGGVRADRAAGMALIWAIAGCLLTFNTDWLLGRFLQSGAVSQAPSTSEVCSGPNCQNSSPKAADDVTSRLPKETPNPVPPAEEVNLPQTPLQPSPEANREEAFNGSGFTKPGNISVPVADVSAPPVFPTLRSKQLDDQIARYQEYIHLHKKPPDILIVGSSRALRGIDPAVLETALAASGYPGLTAYNFGVNGATLQVVDSIVRRILPPQQLPKLLVLADGARALNSGRPDLTFSAIASSEGYRQLSRGSFLIRTNQLESETSKESANNPVATATELVNNLEQTQANVQQLVSQKLVEGSAIYKKRDRLKGFLRSIVNPSAPAATDSPQTAAQGQQTTENAQPTAASKPVSEYQPNGFLPIDIRFNPETYFQNHPKVSGYYDSDYQNFKLAGEQALALKNLIEFTKVRNINLVFVNMPLTEDYLDPVRTGYEQEFRQYMQELAAQSGLIFLDKSLLWPQARESFSDPSHLNRYGAVAVSKRLAQDPMIPWPAKQ
>NC_019729.1|WP_015174273.1|355679_358550_-|zinc-dependent-metalloprotease
MKRLIFPENSKNQRIKIPIKNLPLIFFILSLAFFCFSLYKGFFLPLALSSGPPSNEQTSEQPTLAPFEQVVQDAQKLEGLFTLYRNQATDKVYLEIKPEQLNKKFLCFVTLASGLGEAGILSGMPIGDFLFQLRRVQNNVQFVIPNINFRTSPGDPQAGSVERGFSESILYSLPLKSIQAQRQTLLIDLGDLLMSEKRDLPGVKAILPMLLGASYSIDEDKSYFKDIKAFPLNVEIASIYGFSSDNDSAVNYLASIPDSRAFNLRIHYSFSEVPLNNGYRPRLADERVGYFLTAYKDFSDKSSREPFVRYINRWHLQKQIPTAPMSPPLVPIVFWIENNVPVEYRNAIREGVLEWNKAFEKAGFTEAIQVKQMPDNAKWDPADVRYNTIRWSSSFEPQFAGVGPSRTNPLTGEILDADILLDANVVREIKQGYRSLVEQNRSLSKSFQGRNGSNTNPCQFGMYSRYLNVLENGDLGKSSGENDRGGIADDLPTLVERYQEQKRSRLSRLMSSSDMCFGLESSRQFAIGAMSMDLLENAAPSSPAIDNYVNEYIRYLTAHEVGHTLGLRHNFHGSTMLQPEDLNNTQVTRTQGMIASVMDYVPINLAPAGTVQGDYFPTIVGPYDDWAIEYGYKVIGGVNPNSDLPALQQIASRAAEQQLAYAPDEDSVDLDPAANTFDLSANMLRYSQWQLDNARAMWKRLEKRIPVGGDGYNELRVMFDSVFGYYVNQVMNATLYVGGQSFSRIRPGDAKGKLPFVPIELSQQREALATLEKYVFAPDAFSFAPELLNKLAPSRWEHWGSPALVFPLDYPIGDRITFLQRFVLRVLLSPVRLARLRDAELKSAPETALRLPEVLDTVQKDIWQEVLQPEKKMQISTFRRSLQREHLAILIGMVLRKTSVPEDARSLAWYELRQLREGLSKSIRNLDRNADAYTRAHLEETRDRISKVLNSQIQSN
>NC_019729.1|WP_015174272.1|354802_355426_+|Uma2-family-endonuclease
MVAIAQKTLSFEEFLNWDDDSGRSFELLNGVAMPLSEPTAKHEDVVDGLCRLLVDHCQSLNLPYVPRQSKQVRLNAAPGESESSRKADIVVFAKEEWVRMRQSSASAAAYIPPPLAIEVVSTNWRDDYRIKLNEYETLGILEYWIVDCAGLGGVQYIGSPKQSTVTINRLIDGEYQAQRYQREVIIVSPTFPQLVLTIAQIVAMTEV
>NC_019729.1|WP_015174271.1|353591_354368_+|hypothetical-protein
MDLIIDTQILSYRFKGVETGLHDAKFAIASITANEFLIAQSKESEQPDYYIIHPAKYPNLEYSFSNIEHFSNPKSARLGARRTDQIIIDFGNHFSAYREFGNEAISEIINERKIDIYKLSISHLSKQKQKYLLRRLKYILDSGYYCYSLTKSSLEQALSLFSEFVSEHNCKGNIRNTVNDLLILSTAIDREKKFLTNDNLLNRFAAEYYEAPVEQREDKLLIDFSEKPLKKRKNRESKGYINKGWSYAVRNKRTSPEI
>NC_019729.1|WP_015174270.1|353209_353425_+|DUF433-domain-containing-protein
MFDTITVNPRQCGDRPCIRGMRIRVIDILELLAAGLSFEQIIEELPDLGLEDLKAALLYAVRKLDRPVLAA
>NC_019729.1|WP_190274315.1|378861_379020_+|hypothetical-protein
MADRTVRSTLPAIELLYAPSIGLSILGAIVVSSHFCVTSFRGYQHAPLPGVR
>NC_019729.1|WP_015174282.1|379134_379359_+|hypothetical-protein
MPSENQDLLKTQTPNSPKLSVPSDILLSLVALPMLGGLVVAKAAAEFVASIGVESEELFRGSRLPVLNFPQSQD
>NC_019729.1|WP_015174284.1|379781_382907_+|phosphoenolpyruvate-carboxylase
MSSVLQSSEQAIDATSISHSPAYSKSDLFLRNRLKVVEDLWESVLRQECGQELVDLLQQMRSVNSAEGQATHFRESNVVQLIEKLDLNAAIRAARAFALYFQLINIVEQHYEQRDQQLAYASSNDAGGRMFSKLPGQAMDAPDRPRHREGPGPAQMALNKADSSETIARDAGTFHQLFPMLLRLNVPSQQIQRLIDQLDIRLVFTAHPTEIVRHTIRTKQRRMAKILQQLDQVDEKFQVIGAESPSPYPVSCWEAAALQEQLMEEIRLWWRTDELHQFKPTVLDEVEYTLHYFEEVLFDAIPELYHRLKQALHASYPYLKPPSYNFCKFGSWVGSDRDGNPSVTPKVTWQTACYQRHLVLQKYISAVKRLNELLSLSLHWSDVLPELLESLDRDKSEFPDVYEQWAIRYRQEPYRLKLAYVQQRLENTRDRNWRLYKGDELQREREALSEHPGMTGLYRSGAEFLTELKLIEHNLVETGLSCRDLENLICQVEIYGFNLAYLDIRQESTVHSDALREIAEYLQILPKSYNQMSECDRVIWLATELQTRRPLIPAELPFSPKTCETINTFRVLRQMQQEFGPEICQTYVISMSHDVSDLLAVLLLAKEAGLYDPATGISNIQVVPLFETVEDLKKAPEVMEKIFDLPLYRALLAGGYAQEIAEKTEENIQCPIENIKLQEVMLGYSDSNKDSGFLSSNWEIHKAQKALQMVAEKHGVELRIFHGRGGSVGRGGGPAYKAILAQPGKSISGRIKITEQGEVLASKYSLPELALYNLETVATAVIQASLLHTGFDGIDPWNEIMEELSARSRSHYRHLIYEQPDLVDFFHQVTPIQEISQLQISSRPARRGGKKDISGLRAIPWVFSWTQSRFLLPSWYGVGTALQEFLLEEPEEHMKLLQYFYLKWPFFRMVISKVEMTLSKVDLQIAEHYVRELALPADKERFQTLFEQIAAEFHLIRGLVLTITGHQRLLDEDPSLQRSVQLRNATIVPLGLLQVSLLKRLRQHGSSGIPGVIHSRYSKGELLRGALLTINGIAAGMRNTG
>NC_019729.1|WP_015174286.1|384320_384878_-|HPP-family-protein
MIDSKKIRLKWESYWFKTFGRWSSCPLTCPVDRPHPRHIVWSWIGSFLAITATSYLAVKTNSPLLMAPFGATSVLIFGVPDSPLAQPRNVIGGNCLAALTSLMILHFVGSSPWAMGMAVSSAIGIMQITRTLHPPSGAVALVVMMTQPDWKFLLTPAFEGSIILVLCAVIFNNLAAERTYPNHWL
>NC_019729.1|WP_015174287.1|385260_385827_-|dihem-cytochrome-c
MKQEKPRKRRRVGLRGLYSTLLVLIIVCCTCGGWVAAQTAYSGTPARLAQVSPIEDTGTVDRIPERYQLGKQLYLENCATCHIALPPQVLPTETWRRLLQDPQHYGQTLKLLVDPPRLLVWNYLQTFSRPQAQDEELAYRVASSRYFKALHPKVKMSQPANISSCVTCHPGASQYNFRKLTAEWENSP
>NC_019729.1|WP_015174288.1|385847_386756_-|MBL-fold-metallo-hydrolase
MPDSAPSLPNPQPSDRKATMENSPLTEFVVQFWGVRGSIATPGTKTLRYGGNTSCVEMRLGKKRLIFDGGTGLRVLGLNLLRQMPVEAHMFFSHTHWDHIQGFPFFTPAFIPGNCFHIYGAIAPNGTTIKHRLADQMLHPNFPVPIQVMQSDLKFNDLTPGDILELDDVKIETALLNHPNTAIGYRVTWEGHTAVYCTDTEHFPDRLDDNVLHLARNADVLIYDANYTNEEYYDFKTPKVGWGHSTWQAGVEIAKAAGVKKIVMFHHDPGHDDNFLDRTEAEVQAAFANSCLAREGMSIPVI
>NC_019729.1|WP_015174289.1|387277_387790_-|inorganic-diphosphatase
MDLSLIPAQPKPGLLNVLIEITAGSKNKYEFDKDLQAFALDRVLSSSVQYPCDYGFIPNTLADDGDPLDGLVMMDEPTFPGCIIAARPIGMLEMIDGGDRDEKLLCVPDKDPRYAHYKSLKDVAPHRLDEIAEFFRTYKNLEKKVTEILGWQDVDLVMPLVEKCIAADRK
>NC_019729.1|WP_150111469.1|387856_388066_-|hypothetical-protein
MHNSLHGKYENISLAQTKHSPLKLWDGRPARPVFAESGTPHKPHPQIVPRRSHSPAFGQSHAAGRPDRP
>NC_019729.1|WP_015174290.1|388159_389569_-|serine/threonine-protein-kinase
MTSKILAERYEVQRQLGKQTGRQTLLARDLQTQKLVVIKQLFLGSDFEWQDLKLFQREAETLKALDHPAIPRYLDYLEIDEPDSKGFALVQTYVEGKTLEDHLRSGRTFSESEVKELAKSLLEILIYLHEQKPPVIHRDLKPSNILLHSRSGHSVGKVYLVDFGSVQNQAAKLGGTITVVGTYGYMAPEQFGGRSVPASDLYGLGATLIYLVTGLHPTELPQQDLRIQFADRVTHLNYNLIDWLEWITEPSLDQRLSSAGEAWHSLKNPRPIDQTPMELQPPGSEIKLTKNSEFIEIVIPPQGVGFGLVALLSAAIAANSPSFVNVFNLPEDDGTITNLPPIDSKLIMLAGGFLAVVGVMFLFALFRELRLRIDRQQISCSSNLLGLRWNHSKPAPRQDICQLEIEEIEDTRRYPPQKSWRAYQLIIQAGNQTYQLGVKQKLSESEIEWLATELSQWLGLKIQRTLTDG
>NC_019729.1|WP_015174291.1|389712_391017_-|serine/threonine-protein-kinase
MSGQNIGDLSKEILADRYQCDRRLGKQAGRQTLLARDLKTQQQVVVKLLSFSSDFNWEDLKLFQREVETLKSLSHPAIPRYLDSFEIDTPNRKGFALVQTYIEAKSLQEYLSDGRTFSESEVKQLAAALLDILAYLHQRQPPVIHRDIKPSNILLKNRSGNSVGEVYLVDFGAVQTLATQQGKTVTVVGTYGYMPPEQFGGRAVPASDLYGLGATLIALITKQHPADLPQKDLQIEFDEFTQLSPAFTNWLKWMTHPSLERRPASAQIAKEVLEKPQEINKYSQTLRLGKIVSSARVFATAIGYSTLTGAIAVGACAAIYSTFLMGILGTIIGGILGIVLGLLLGVENGIIVGIVTISSFYPLTNPKSHRQVLTAISIGISTLTSIVFFQMMHFSPVLDSNYIFVVIAPSLIAGLSMGASTKSIARWYQKESGL

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Crispr_ID: NC_019729_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_2

377580-377742

Orphan

Consensus_repeat	Method
AATCAAATATCTGATATTAGTCCCTTGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019729_2

>merge|NC_019729|2|377580-377742|CRISPRCasFinder
AATAAAATTTCTGATATTAGCTCGCTCAGCTCGCTGACTAATCTAACTATTCTTCAGTTAGATCGGAACAGGATTTCTGATATTACTCCTTTAAAATTTCTGACTAATTTAACTGAGTTATCTATTTGGTATAATCAAGTATCTAATATTTATCCTCTAAAAA

>NC_019729|2|2|377580-377742|CRISPRCasFinder
AATAAAATTTCTGATATTAGCTCGCTCAGC	TCGCTGACTAATCTAACTATTCTTCAGTTAGATCGG
AACAGGATTTCTGATATTACTCCTTTAAAA	TTTCTGACTAATTTAACTGAGTTATCTATTTGGTAT
AATCAAGTATCTAATATTTATCCTCTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174277.1\|368686_370051_+\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719
NC_019729.1\|WP_015174276.1\|362816_368666_+\|DUF4114-domain-containing-protein	unknown	unknown	gnl\|CDD\|173787
NC_019729.1\|WP_015174290.1\|388159_389569_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015174270.1\|353209_353425_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_019729.1\|WP_190274315.1\|378861_379020_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174273.1\|355679_358550_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|379818
NC_019729.1\|WP_150111469.1\|387856_388066_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174287.1\|385260_385827_-\|dihem-cytochrome-c	unknown	unknown	gnl\|CDD\|378226
NC_019729.1\|WP_015174282.1\|379134_379359_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174288.1\|385847_386756_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293801
NC_019729.1\|WP_015174289.1\|387277_387790_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|238239
NC_019729.1\|WP_150111468.1\|372256_373393_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174286.1\|384320_384878_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NC_019729.1\|WP_015174284.1\|379781_382907_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NC_019729.1\|WP_015174280.1\|373862_377114_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NC_019729.1\|WP_015174272.1\|354802_355426_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174278.1\|370845_372003_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380786
NC_019729.1\|WP_015174271.1\|353591_354368_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174291.1\|389712_391017_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015174274.1\|358656_362178_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174277.1\|368686_370051_+\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	1.92781e-09
NC_019729.1\|WP_015174273.1\|355679_358550_-\|zinc-dependent-metalloprotease	gnl\|CDD\|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	1.35281e-93
NC_019729.1\|WP_015174286.1\|384320_384878_-\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	1.81943e-70
NC_019729.1\|WP_015174270.1\|353209_353425_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.06493e-22
NC_019729.1\|WP_015174276.1\|362816_368666_+\|DUF4114-domain-containing-protein	gnl\|CDD\|173787	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	3.32941e-26
NC_019729.1\|WP_015174287.1\|385260_385827_-\|dihem-cytochrome-c	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.34827e-35
NC_019729.1\|WP_015174290.1\|388159_389569_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.7982e-57
NC_019729.1\|WP_015174288.1\|385847_386756_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293801	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain. Myxococcus xanthus Tar3 may function as an ammonium regulator/effector protein involved in biosynthesis of the antibiotic TA. Some are members of this subgroup are annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.54214e-114
NC_019729.1\|WP_015174289.1\|387277_387790_-\|inorganic-diphosphatase	gnl\|CDD\|238239	cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.	3.53957e-81
NC_019729.1\|WP_015174284.1\|379781_382907_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NC_019729.1\|WP_015174280.1\|373862_377114_+\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.40835e-17
NC_019729.1\|WP_015174278.1\|370845_372003_+\|hypothetical-protein	gnl\|CDD\|380786	cd20216, PFM_HFR-2-like, pore-forming module of wheat HFR-2 toxin, FEM32, and similar aerolysin-type beta-barrel pore-forming proteins. HFR-2 is a wheat cytolytic toxin which may normally function in defense against certain insects or pathogens. The Hfr-2 gene is upregulated in virulent Hessian fly larval feedingdouble dagger. The HFR-2 protein may insert in plant cell membranes at the feeding sites and by forming pores provide water, ions and other small nutritive molecules to the developing larvae. This group also contains FEM32, a flower-specific lectin-like protein from the dioecious plant Rumex acetosa, which alters flower development and induces male sterility in transgenic tobacco. It has been suggested that the FEM32 gene activates some form of programmed cell death (PCD), a process that could be mediated by the action of its lectin domains for binding to specific glycoproteins on the cell membrane and facilitated by the formation of pore structures in the membranes and the subsequent leakage of the cytosolic content through its pore-forming aerolysin domain. Most proteins belonging to this group have N-terminal agglutatin (also known as amaranthin) lectin domains; most have two agglutatin domains, in combination with one aerolysin domain. Members of this group belong to the aerolysin family of beta-pore-forming proteins (beta-PFPs). PFPs are generally secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores harmful to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel, are found in all kingdoms of life and many are bacterial toxins. In addition to having a role in microbial infection, they have potential as biotechnological sensors and delivery systems. They share a similar monomeric architecture, with a variable membrane-binding domain and a structurally conserved pore-forming region. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	0.00485396
NC_019729.1\|WP_015174272.1\|354802_355426_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.60805e-30
NC_019729.1\|WP_015174291.1\|389712_391017_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.86202e-59

>NC_019729.1|WP_015174280.1|373862_377114_+|S8-family-serine-peptidase
MAGDRQYAKDNNILIVAAAGNEGTLLCVLGQASTEFDNIITVGASDNNNRAAYSSYGGGLDILAPTSLTQTAESSTTETKQGTSIAAAKVTNTIWQMWAANPSLNYQQIKNILLNTAKDIDVPDWDERTGYGILNPELAIATAIETIPAIPVLAAAKHLTKSLIDADANPSNTPNNTAPKPSERATATTAPGTPKTTSTSTGNSNEGTSSYTTEVAPYTTTSTSSSNGTSTTNSYTNSNLSNTESSWDKSRVKTNTKGNSFNESTSDSNTSASTYTSKSFSQNSLENKNQSQQNYSRVKYEGTRNDQSSSNQKSRSSSNYTTPSQTTNTTAESYRNSFSQSDSKYGTGYAMNNGKRQDDWGSKSTSNTRNTSSTGSSVNNSSTQIQGKANWTNSSNNNSSLNTHNGEESQVNRSYSESNSTSGFSKNNNSSDNYSVINSTWDNTTTDGKAVGSNSRDVYSEGNSNSNSSYDDGKTKNTSNRDTYTVNQSEQTNSSNGPSYWQNNRGNNYSVTQTNDTQNYKNGPSTSSHNRDTYSVSKSKSSSSNSSGKVSSKNEQENYSENHAQWESEYKADTYTTQSNSDESTITATKSNSSTEGSNSTSSNSSDTSTTRNSQTVTTYKDGRKTENGSSTYQKWSSESTYDSKGVASSVSKYSSWSSSYSNSYFKGGYSWTETVSGYDSESVTKAGVSTSNGNSWSWTRSGTVWDDGPNNWSESWSKSSWKDGKYAPGESEVTRGSFDPKGTQTQTNNLPEFGEAPRLNKAPKQQVPIDFQKPPKPSDDIWQLPPRTFTDTNPPEAPNFPDNWSAGSGGGNPKDSDVDIKAAIDYNNAQGYSKDAIRLIQRVVGAGQTGVFGEDTVRKIANWQSAHRLKRDGKVDSNTLWSIVTELRMRNQPLDALLLSRYVKTRQYVTDANRIIPTGYGPSGRTPGSGDAQSIVETLKKNRQLTLSGELKTVGDATTEYNCHGFTFLGGAEWIKNNSDVENIIKDNGYSVTSKPSVGDVVIYRDDNNKIQHSGIVAAVSGGQVTRVISKWAMYGLYEHNLKDVPLSYGQNTTVYKSNRTSGNFPQGLGAGRPGNHLLRPR
>NC_019729.1|WP_150111468.1|372256_373393_+|hypothetical-protein
MKAINCHNFQIWTIAFIEWNNSIKEDIVELKPLNAARIISGPGPKSFPARPYIKTYASPGGLASTVYKGDDETMPIALWVGDTARLISLSETPLDLSARSDGGVWISTHQTLLFHYDRAGALKHRVNLPGTNIVGVDGDAVWVMTDEKAWFVNVNGDVRGSYPWKGFNRSAGSKQAICQLERDKIRRIQCLEPDGSKHFVNISLPKSPSGKLLFFSDDKLLTGSIGSGDLGYYSTGGIAADLTIENAGMTGSGDAFISMRTDDDLAEVCLTKGTGQRFALKYKIPSFPLPVILSVLAVEGDRTLVYGADRAVWYKGSQIEKSFTVDDNVYRKEIFPHHWRTATNFVTANSSDGTIIISTSGPTGMALIGMRWHPEPQR
>NC_019729.1|WP_015174278.1|370845_372003_+|hypothetical-protein
MRTRNGQTVTVYKDGRKDETQTSSYERWWSDSNTDKGVTTYTSGSSTWSSTYRRTEFKGGYSWSETISGTNTESVTKGGVTTSKQTNWSWTRSGTVWDDGRNNWSESWSKSNWENGRSVPGESETARGSYDPKGTGTQTNNLPQAGEAPRLTKPPKDILELNKQPKYKPQPSQEFYELPIANPEIEKKFPGDFFAGNPAPRKPTFKEQIEKLLKSGAIANYNQIVGLIIQNNSLEDLRSVVGDVGMRTLIVDKFRQKPEMATAIMAALLKGMQRWQNPAPNDFVLHFDVDKSSDPMSYDANMNCWEMILYAAFLCGQITTSQIREFFKRAKYGPGFFSGMPMMGYDESLHSMSLYPAANNRQQSGPYNQDNFFFIELPIKEIQIM
>NC_019729.1|WP_015174277.1|368686_370051_+|WG-repeat-containing-protein
MSLVKRLRVLFYLALVAVFLIMTQLASSETSKSDNEKYGLIDKNGKYVVEPQFDGIDNFQEGLAEVMVDGKIGYIDRTGQVVIPFQFEWSTESFSEGLAVAKLKGSEKVGYIDKTGKYVIPPKFDRADSFHEGLAVVVVNYKYGYINKQGSYVIPPKFDYATEFREGIAVVQSAQKYGLIDRTGKYIAPPSFDHIHNSDAREGFSTAAEFKDGLMRVAVGGKLCYRGGVAGGKWGYIDRMGKLVIPLKFATVGEFYNGRAKVSMSALDCEAGSPIKWDYINQSGEYITRLLFDDAYNFSEGMAAVEIGGKSGYIDLSGKLVIPPQFISTREFSEGLAAINSSENGLYGYIDKTGKLLIAPQFNWAENFLNGSAMVQVNDKQGIIDKTGKYLIEPKFDLVSEFYEGLARVNLNEKWGYIARTGKLVIDVKFDSARDFDRGIAIVGVKQKTANKNS
>NC_019729.1|WP_015174276.1|362816_368666_+|DUF4114-domain-containing-protein
MSPIEASTPKLTANISLIPDIPEELQLANSTNNYYSPPKNLLTTNETSSTNSSIELLSSNNQILDNSPETPPQQAEIDAFILNKDSTPTTNNIPEKPQTSTTQTDAITGDTAKPATQNNISFDSGIFQADETGKILFDYLSDGGRYQGELAIISLTGMQEFVPDSEAFIREAARRALSNSSLGYIAISDITEAAKFSSFEGENNFNIGEYRGIKTFAMTPGDELGIIVVPNGTIQEAYNNPAIGGDKKPLFSMATANSSDAFQRGQIAAVANGGSIFVMEDMGIGEGSEADYNDIIFSLKGATPKVISMDDLIAKNSDWRTSEKGKELIGDAAPKTETKLEDKKADTTSATNPVETKPENSPATETKNPTVSETPNSETNPVETKTENSPVIEDKQPTVSEISHSETNPVETKTENSPATETQNPTVSETPNSETNPVETKTENSPVIEDKQPPVSENIYFPKNPVETEIDFITGDTIEKPVFIQPEKLEIPVIPAESTDILTGEMENTSPTPIDSLENAGETADNLPLISPDEISTLWESLNSILAQQFPNIPETESSQNHQPSASEYSEYIVTDSQTIIPEIAVTENYDSQPSENITADSENQPPTTIGEFVNPDFEWENIAITPEILSDANNQPDNSLHIIPDSEIATTTDSNSEPTISEYTITDTETQPEITPNLPQQNQPLIGIIDTGFVANNPNIDYSQIILGKDLIDGDNNPLLQPNEGNQHGNTILDIINDSSNQSDTKKSTPIWLGRATGSGNWYQSLIEFVDAAKAAKQPNAVVNLSFDLTQINPDGTQTTRHKLTAEETAALKYAKDNNILIVAAAGNEGNLVSALGQASTEFDNIITVGASENNYRAGYSSYGEGLDILAPCDIPQTAEAATTETKQGTSIAAAKVTNTLSQMWAANPSLDYLQIKNILLNTAKDIDVPDWDERTGYGILNSESAIATSAETIPTIPVLAAAKLLTKPLIDVGANTSNSPNSTEAKPSERATATTAPGTPKTTSRSTGDYNVGTSSYTTDLAPYKTTSTSSSNGTTTTNSRILSSLSNTESSWDKSTTKTNHKGESFDESTSDSTTNAVTYTSKSFSQNSTENKNQWQENRSRVKYEGTRSDSSESAQKSRSSYDYTTPTYTRYDASESYRNSKSQSNSRYGTNLSIYNGNRQDDWGSKSTTNTRTTNGNNISTSKSATQTAGNAKWTNGSNGSSSNNTHSGEETTVSTSNSTNSNSSGFSKSSNSNDGYSVTNSTWDNNTINGVAINSNTRDVYSESSTNNQSSYDDGRSKNHSYQDTYTVNQSEQTNSSQGSSYRQNNRNNNYSVRQGNDTQTYKHGPQTSSRITDSYSVTKSDGYSANSSGKVTSKNNQESYSENFVQHDSEYKIDAYTTTTTGDEQTITSTRSNSSNDGTNNASSSSSDTVRTRNGQTVTVYKDGRKDETQTSSYERWWSDNSTDKGVTTYTSGSSTWSSTYRRTEFKGGYSWSETISGTDTESVTKGGVTTSKQTNWSWTRSGTVWDDGRNNWSESWSKSNWENGKSIPGESETARGSYDPKGTGTQTDNLPKAGEAPRLNKPPKNVVDLNKQPKYKPQPSQEFYEQPASYDKKFADNFPTEDPYAAVPPPASWPPKDIGSYWLSYTGTLKSSAERRKIFQDIIKNRSIQKVYMNALSVGGTTFSYGGGMPITGGDIFAEFKEELDRYNLAHPNNRRTIDVIGWFEGTGLAASTSPMYKAAQRANAVLGLKGDGGASYVDLVHPTVWGELQNIAKDFISKHGGLVKEIIFDDRLGIPKAAEADVINLHRATIATDGGPGGKSWIQRALTKNLTNLKNALPSTTFSFSGNLPAVAFEHQNQELAKWLADGIINGGYNLQFYKNGSNYPVFVNDYNTYVPQMLRLLNQNKNRFSVSIGYYAQKEYLKRQELIQQISFLRNNKVASLLPSQIIGFDYRTIRDIQQ
>NC_019729.1|WP_015174274.1|358656_362178_-|hypothetical-protein
MLNANGSILTDNRSTASQWAGEALGLPEVQVQARLRGNHLHILCEAAQCPSQELVTARFTSALEQTDLTRLLPDRPKIYQLFLCGRKLGSRQNDWTVRLDCSSPKRQQQPQQPEPKVAEVPPPASSPTYEPPASPKRGGFFGRFKNNNQKLKQTPKPVETAAPPPQVREELDFDAESLPVASRIQYPEAFETSPVTIDTSAAATREAFSSTVPPQQKANRGAVALIQSPESDSGEGDRGGTLTVSPETLARRGYPDAIASYLSEILGPMGVSVKVSIREKELKSSRETLPVNAPENIKPKERRLLVLCESAYSPDPSLLAEPIAGRLRKLQLEDFREALIASQVSGEAKPDWLLRVDLTSPDKILKEWARWGDVQSIAKLLNQHLAASRVEVRATLKEATLHLFCSKTAKKGQKPKRQEYPDKQQTTDAIAPLLASFAPQGIRAATIYGVEPAKDSQAAPESPVWIDWVDLPAAHHPDLAPSTRTLAIEGDQLALTFLLNRLLNPNLRRKLETGGIRAVVLQKANVLHVMTEALTCPSQSKVGPPVAKFLRHLEIPGVAGVRVYGRRAGQKLPLWRYAIDLRTAVDEESATAPAPAPSQVAVLAKEPVPEFAPVEDGSFSGLGDNLVFDAPMPNSWRPRFKIRLPGYNLGEQLVQAAVQPLVASGLFVPNDGLSTNAAAPGGVRADRAAGMALIWAIAGCLLTFNTDWLLGRFLQSGAVSQAPSTSEVCSGPNCQNSSPKAADDVTSRLPKETPNPVPPAEEVNLPQTPLQPSPEANREEAFNGSGFTKPGNISVPVADVSAPPVFPTLRSKQLDDQIARYQEYIHLHKKPPDILIVGSSRALRGIDPAVLETALAASGYPGLTAYNFGVNGATLQVVDSIVRRILPPQQLPKLLVLADGARALNSGRPDLTFSAIASSEGYRQLSRGSFLIRTNQLESETSKESANNPVATATELVNNLEQTQANVQQLVSQKLVEGSAIYKKRDRLKGFLRSIVNPSAPAATDSPQTAAQGQQTTENAQPTAASKPVSEYQPNGFLPIDIRFNPETYFQNHPKVSGYYDSDYQNFKLAGEQALALKNLIEFTKVRNINLVFVNMPLTEDYLDPVRTGYEQEFRQYMQELAAQSGLIFLDKSLLWPQARESFSDPSHLNRYGAVAVSKRLAQDPMIPWPAKQ
>NC_019729.1|WP_015174273.1|355679_358550_-|zinc-dependent-metalloprotease
MKRLIFPENSKNQRIKIPIKNLPLIFFILSLAFFCFSLYKGFFLPLALSSGPPSNEQTSEQPTLAPFEQVVQDAQKLEGLFTLYRNQATDKVYLEIKPEQLNKKFLCFVTLASGLGEAGILSGMPIGDFLFQLRRVQNNVQFVIPNINFRTSPGDPQAGSVERGFSESILYSLPLKSIQAQRQTLLIDLGDLLMSEKRDLPGVKAILPMLLGASYSIDEDKSYFKDIKAFPLNVEIASIYGFSSDNDSAVNYLASIPDSRAFNLRIHYSFSEVPLNNGYRPRLADERVGYFLTAYKDFSDKSSREPFVRYINRWHLQKQIPTAPMSPPLVPIVFWIENNVPVEYRNAIREGVLEWNKAFEKAGFTEAIQVKQMPDNAKWDPADVRYNTIRWSSSFEPQFAGVGPSRTNPLTGEILDADILLDANVVREIKQGYRSLVEQNRSLSKSFQGRNGSNTNPCQFGMYSRYLNVLENGDLGKSSGENDRGGIADDLPTLVERYQEQKRSRLSRLMSSSDMCFGLESSRQFAIGAMSMDLLENAAPSSPAIDNYVNEYIRYLTAHEVGHTLGLRHNFHGSTMLQPEDLNNTQVTRTQGMIASVMDYVPINLAPAGTVQGDYFPTIVGPYDDWAIEYGYKVIGGVNPNSDLPALQQIASRAAEQQLAYAPDEDSVDLDPAANTFDLSANMLRYSQWQLDNARAMWKRLEKRIPVGGDGYNELRVMFDSVFGYYVNQVMNATLYVGGQSFSRIRPGDAKGKLPFVPIELSQQREALATLEKYVFAPDAFSFAPELLNKLAPSRWEHWGSPALVFPLDYPIGDRITFLQRFVLRVLLSPVRLARLRDAELKSAPETALRLPEVLDTVQKDIWQEVLQPEKKMQISTFRRSLQREHLAILIGMVLRKTSVPEDARSLAWYELRQLREGLSKSIRNLDRNADAYTRAHLEETRDRISKVLNSQIQSN
>NC_019729.1|WP_015174272.1|354802_355426_+|Uma2-family-endonuclease
MVAIAQKTLSFEEFLNWDDDSGRSFELLNGVAMPLSEPTAKHEDVVDGLCRLLVDHCQSLNLPYVPRQSKQVRLNAAPGESESSRKADIVVFAKEEWVRMRQSSASAAAYIPPPLAIEVVSTNWRDDYRIKLNEYETLGILEYWIVDCAGLGGVQYIGSPKQSTVTINRLIDGEYQAQRYQREVIIVSPTFPQLVLTIAQIVAMTEV
>NC_019729.1|WP_015174271.1|353591_354368_+|hypothetical-protein
MDLIIDTQILSYRFKGVETGLHDAKFAIASITANEFLIAQSKESEQPDYYIIHPAKYPNLEYSFSNIEHFSNPKSARLGARRTDQIIIDFGNHFSAYREFGNEAISEIINERKIDIYKLSISHLSKQKQKYLLRRLKYILDSGYYCYSLTKSSLEQALSLFSEFVSEHNCKGNIRNTVNDLLILSTAIDREKKFLTNDNLLNRFAAEYYEAPVEQREDKLLIDFSEKPLKKRKNRESKGYINKGWSYAVRNKRTSPEI
>NC_019729.1|WP_015174270.1|353209_353425_+|DUF433-domain-containing-protein
MFDTITVNPRQCGDRPCIRGMRIRVIDILELLAAGLSFEQIIEELPDLGLEDLKAALLYAVRKLDRPVLAA
>NC_019729.1|WP_190274315.1|378861_379020_+|hypothetical-protein
MADRTVRSTLPAIELLYAPSIGLSILGAIVVSSHFCVTSFRGYQHAPLPGVR
>NC_019729.1|WP_015174282.1|379134_379359_+|hypothetical-protein
MPSENQDLLKTQTPNSPKLSVPSDILLSLVALPMLGGLVVAKAAAEFVASIGVESEELFRGSRLPVLNFPQSQD
>NC_019729.1|WP_015174284.1|379781_382907_+|phosphoenolpyruvate-carboxylase
MSSVLQSSEQAIDATSISHSPAYSKSDLFLRNRLKVVEDLWESVLRQECGQELVDLLQQMRSVNSAEGQATHFRESNVVQLIEKLDLNAAIRAARAFALYFQLINIVEQHYEQRDQQLAYASSNDAGGRMFSKLPGQAMDAPDRPRHREGPGPAQMALNKADSSETIARDAGTFHQLFPMLLRLNVPSQQIQRLIDQLDIRLVFTAHPTEIVRHTIRTKQRRMAKILQQLDQVDEKFQVIGAESPSPYPVSCWEAAALQEQLMEEIRLWWRTDELHQFKPTVLDEVEYTLHYFEEVLFDAIPELYHRLKQALHASYPYLKPPSYNFCKFGSWVGSDRDGNPSVTPKVTWQTACYQRHLVLQKYISAVKRLNELLSLSLHWSDVLPELLESLDRDKSEFPDVYEQWAIRYRQEPYRLKLAYVQQRLENTRDRNWRLYKGDELQREREALSEHPGMTGLYRSGAEFLTELKLIEHNLVETGLSCRDLENLICQVEIYGFNLAYLDIRQESTVHSDALREIAEYLQILPKSYNQMSECDRVIWLATELQTRRPLIPAELPFSPKTCETINTFRVLRQMQQEFGPEICQTYVISMSHDVSDLLAVLLLAKEAGLYDPATGISNIQVVPLFETVEDLKKAPEVMEKIFDLPLYRALLAGGYAQEIAEKTEENIQCPIENIKLQEVMLGYSDSNKDSGFLSSNWEIHKAQKALQMVAEKHGVELRIFHGRGGSVGRGGGPAYKAILAQPGKSISGRIKITEQGEVLASKYSLPELALYNLETVATAVIQASLLHTGFDGIDPWNEIMEELSARSRSHYRHLIYEQPDLVDFFHQVTPIQEISQLQISSRPARRGGKKDISGLRAIPWVFSWTQSRFLLPSWYGVGTALQEFLLEEPEEHMKLLQYFYLKWPFFRMVISKVEMTLSKVDLQIAEHYVRELALPADKERFQTLFEQIAAEFHLIRGLVLTITGHQRLLDEDPSLQRSVQLRNATIVPLGLLQVSLLKRLRQHGSSGIPGVIHSRYSKGELLRGALLTINGIAAGMRNTG
>NC_019729.1|WP_015174286.1|384320_384878_-|HPP-family-protein
MIDSKKIRLKWESYWFKTFGRWSSCPLTCPVDRPHPRHIVWSWIGSFLAITATSYLAVKTNSPLLMAPFGATSVLIFGVPDSPLAQPRNVIGGNCLAALTSLMILHFVGSSPWAMGMAVSSAIGIMQITRTLHPPSGAVALVVMMTQPDWKFLLTPAFEGSIILVLCAVIFNNLAAERTYPNHWL
>NC_019729.1|WP_015174287.1|385260_385827_-|dihem-cytochrome-c
MKQEKPRKRRRVGLRGLYSTLLVLIIVCCTCGGWVAAQTAYSGTPARLAQVSPIEDTGTVDRIPERYQLGKQLYLENCATCHIALPPQVLPTETWRRLLQDPQHYGQTLKLLVDPPRLLVWNYLQTFSRPQAQDEELAYRVASSRYFKALHPKVKMSQPANISSCVTCHPGASQYNFRKLTAEWENSP
>NC_019729.1|WP_015174288.1|385847_386756_-|MBL-fold-metallo-hydrolase
MPDSAPSLPNPQPSDRKATMENSPLTEFVVQFWGVRGSIATPGTKTLRYGGNTSCVEMRLGKKRLIFDGGTGLRVLGLNLLRQMPVEAHMFFSHTHWDHIQGFPFFTPAFIPGNCFHIYGAIAPNGTTIKHRLADQMLHPNFPVPIQVMQSDLKFNDLTPGDILELDDVKIETALLNHPNTAIGYRVTWEGHTAVYCTDTEHFPDRLDDNVLHLARNADVLIYDANYTNEEYYDFKTPKVGWGHSTWQAGVEIAKAAGVKKIVMFHHDPGHDDNFLDRTEAEVQAAFANSCLAREGMSIPVI
>NC_019729.1|WP_015174289.1|387277_387790_-|inorganic-diphosphatase
MDLSLIPAQPKPGLLNVLIEITAGSKNKYEFDKDLQAFALDRVLSSSVQYPCDYGFIPNTLADDGDPLDGLVMMDEPTFPGCIIAARPIGMLEMIDGGDRDEKLLCVPDKDPRYAHYKSLKDVAPHRLDEIAEFFRTYKNLEKKVTEILGWQDVDLVMPLVEKCIAADRK
>NC_019729.1|WP_150111469.1|387856_388066_-|hypothetical-protein
MHNSLHGKYENISLAQTKHSPLKLWDGRPARPVFAESGTPHKPHPQIVPRRSHSPAFGQSHAAGRPDRP
>NC_019729.1|WP_015174290.1|388159_389569_-|serine/threonine-protein-kinase
MTSKILAERYEVQRQLGKQTGRQTLLARDLQTQKLVVIKQLFLGSDFEWQDLKLFQREAETLKALDHPAIPRYLDYLEIDEPDSKGFALVQTYVEGKTLEDHLRSGRTFSESEVKELAKSLLEILIYLHEQKPPVIHRDLKPSNILLHSRSGHSVGKVYLVDFGSVQNQAAKLGGTITVVGTYGYMAPEQFGGRSVPASDLYGLGATLIYLVTGLHPTELPQQDLRIQFADRVTHLNYNLIDWLEWITEPSLDQRLSSAGEAWHSLKNPRPIDQTPMELQPPGSEIKLTKNSEFIEIVIPPQGVGFGLVALLSAAIAANSPSFVNVFNLPEDDGTITNLPPIDSKLIMLAGGFLAVVGVMFLFALFRELRLRIDRQQISCSSNLLGLRWNHSKPAPRQDICQLEIEEIEDTRRYPPQKSWRAYQLIIQAGNQTYQLGVKQKLSESEIEWLATELSQWLGLKIQRTLTDG
>NC_019729.1|WP_015174291.1|389712_391017_-|serine/threonine-protein-kinase
MSGQNIGDLSKEILADRYQCDRRLGKQAGRQTLLARDLKTQQQVVVKLLSFSSDFNWEDLKLFQREVETLKSLSHPAIPRYLDSFEIDTPNRKGFALVQTYIEAKSLQEYLSDGRTFSESEVKQLAAALLDILAYLHQRQPPVIHRDIKPSNILLKNRSGNSVGEVYLVDFGAVQTLATQQGKTVTVVGTYGYMPPEQFGGRAVPASDLYGLGATLIALITKQHPADLPQKDLQIEFDEFTQLSPAFTNWLKWMTHPSLERRPASAQIAKEVLEKPQEINKYSQTLRLGKIVSSARVFATAIGYSTLTGAIAVGACAAIYSTFLMGILGTIIGGILGIVLGLLLGVENGIIVGIVTISSFYPLTNPKSHRQVLTAISIGISTLTSIVFFQMMHFSPVLDSNYIFVVIAPSLIAGLSMGASTKSIARWYQKESGL

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Crispr_ID: NC_019729_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_3

377910-378204

Orphan

Consensus_repeat	Method
AATCAAATATCTGATATTAGTCCCTTGAAA	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_019729_3

>merge|NC_019729|3|377910-378204|CRISPRCasFinder
AATCAAATATCTGATATTAGTCCCTTGAAATATCTAAATCAATTAACTGAATTAGGAATTAGCAGAAATCAAATATCTGATATTAGTCCCTTGAAACATTTAAGCAAATTAACTGAATTATTCCTAAATAATAATAAGGTTTCTGACATTACTCCTTTACAATTTTTGACTAATTTAAATACACTGTGGCTCAATCGAAATAGAGTATCTGATATTAGCACTCTCAAATTGTTGGCTAACTTAAATACACTATATCTCATAAATAATCAAATTTATGACATTAGTCCGTTGAGAT

>NC_019729|3|3|377910-378204|CRISPRCasFinder
AATCAAATATCTGATATTAGTCCCTTGAAA	TATCTAAATCAATTAACTGAATTAGGAATTAGCAGA
AATCAAATATCTGATATTAGTCCCTTGAAA	CATTTAAGCAAATTAACTGAATTATTCCTAAATAAT
AATAAGGTTTCTGACATTACTCCTTTACAA	TTTTTGACTAATTTAAATACACTGTGGCTCAATCGA
AATAGAGTATCTGATATTAGCACTCTCAAA	TTGTTGGCTAACTTAAATACACTATATCTCATAAAT
AATCAAATTTATGACATTAGTCCGTTGAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174277.1\|368686_370051_+\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719
NC_019729.1\|WP_015174276.1\|362816_368666_+\|DUF4114-domain-containing-protein	unknown	unknown	gnl\|CDD\|173787
NC_019729.1\|WP_015174290.1\|388159_389569_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015174270.1\|353209_353425_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_019729.1\|WP_190274315.1\|378861_379020_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174273.1\|355679_358550_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|379818
NC_019729.1\|WP_150111469.1\|387856_388066_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174287.1\|385260_385827_-\|dihem-cytochrome-c	unknown	unknown	gnl\|CDD\|378226
NC_019729.1\|WP_015174282.1\|379134_379359_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174288.1\|385847_386756_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293801
NC_019729.1\|WP_015174289.1\|387277_387790_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|238239
NC_019729.1\|WP_150111468.1\|372256_373393_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174286.1\|384320_384878_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NC_019729.1\|WP_015174284.1\|379781_382907_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|366019
NC_019729.1\|WP_015174280.1\|373862_377114_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NC_019729.1\|WP_015174272.1\|354802_355426_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174278.1\|370845_372003_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380786
NC_019729.1\|WP_015174271.1\|353591_354368_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174291.1\|389712_391017_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015174274.1\|358656_362178_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174277.1\|368686_370051_+\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	1.92781e-09
NC_019729.1\|WP_015174273.1\|355679_358550_-\|zinc-dependent-metalloprotease	gnl\|CDD\|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	1.35281e-93
NC_019729.1\|WP_015174286.1\|384320_384878_-\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	1.81943e-70
NC_019729.1\|WP_015174270.1\|353209_353425_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.06493e-22
NC_019729.1\|WP_015174276.1\|362816_368666_+\|DUF4114-domain-containing-protein	gnl\|CDD\|173787	cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	3.32941e-26
NC_019729.1\|WP_015174287.1\|385260_385827_-\|dihem-cytochrome-c	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	2.34827e-35
NC_019729.1\|WP_015174290.1\|388159_389569_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.7982e-57
NC_019729.1\|WP_015174288.1\|385847_386756_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293801	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain. Myxococcus xanthus Tar3 may function as an ammonium regulator/effector protein involved in biosynthesis of the antibiotic TA. Some are members of this subgroup are annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.54214e-114
NC_019729.1\|WP_015174289.1\|387277_387790_-\|inorganic-diphosphatase	gnl\|CDD\|238239	cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.	3.53957e-81
NC_019729.1\|WP_015174284.1\|379781_382907_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NC_019729.1\|WP_015174280.1\|373862_377114_+\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.40835e-17
NC_019729.1\|WP_015174278.1\|370845_372003_+\|hypothetical-protein	gnl\|CDD\|380786	cd20216, PFM_HFR-2-like, pore-forming module of wheat HFR-2 toxin, FEM32, and similar aerolysin-type beta-barrel pore-forming proteins. HFR-2 is a wheat cytolytic toxin which may normally function in defense against certain insects or pathogens. The Hfr-2 gene is upregulated in virulent Hessian fly larval feedingdouble dagger. The HFR-2 protein may insert in plant cell membranes at the feeding sites and by forming pores provide water, ions and other small nutritive molecules to the developing larvae. This group also contains FEM32, a flower-specific lectin-like protein from the dioecious plant Rumex acetosa, which alters flower development and induces male sterility in transgenic tobacco. It has been suggested that the FEM32 gene activates some form of programmed cell death (PCD), a process that could be mediated by the action of its lectin domains for binding to specific glycoproteins on the cell membrane and facilitated by the formation of pore structures in the membranes and the subsequent leakage of the cytosolic content through its pore-forming aerolysin domain. Most proteins belonging to this group have N-terminal agglutatin (also known as amaranthin) lectin domains; most have two agglutatin domains, in combination with one aerolysin domain. Members of this group belong to the aerolysin family of beta-pore-forming proteins (beta-PFPs). PFPs are generally secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores harmful to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel, are found in all kingdoms of life and many are bacterial toxins. In addition to having a role in microbial infection, they have potential as biotechnological sensors and delivery systems. They share a similar monomeric architecture, with a variable membrane-binding domain and a structurally conserved pore-forming region. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	0.00485396
NC_019729.1\|WP_015174272.1\|354802_355426_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.60805e-30
NC_019729.1\|WP_015174291.1\|389712_391017_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.86202e-59

>NC_019729.1|WP_015174280.1|373862_377114_+|S8-family-serine-peptidase
MAGDRQYAKDNNILIVAAAGNEGTLLCVLGQASTEFDNIITVGASDNNNRAAYSSYGGGLDILAPTSLTQTAESSTTETKQGTSIAAAKVTNTIWQMWAANPSLNYQQIKNILLNTAKDIDVPDWDERTGYGILNPELAIATAIETIPAIPVLAAAKHLTKSLIDADANPSNTPNNTAPKPSERATATTAPGTPKTTSTSTGNSNEGTSSYTTEVAPYTTTSTSSSNGTSTTNSYTNSNLSNTESSWDKSRVKTNTKGNSFNESTSDSNTSASTYTSKSFSQNSLENKNQSQQNYSRVKYEGTRNDQSSSNQKSRSSSNYTTPSQTTNTTAESYRNSFSQSDSKYGTGYAMNNGKRQDDWGSKSTSNTRNTSSTGSSVNNSSTQIQGKANWTNSSNNNSSLNTHNGEESQVNRSYSESNSTSGFSKNNNSSDNYSVINSTWDNTTTDGKAVGSNSRDVYSEGNSNSNSSYDDGKTKNTSNRDTYTVNQSEQTNSSNGPSYWQNNRGNNYSVTQTNDTQNYKNGPSTSSHNRDTYSVSKSKSSSSNSSGKVSSKNEQENYSENHAQWESEYKADTYTTQSNSDESTITATKSNSSTEGSNSTSSNSSDTSTTRNSQTVTTYKDGRKTENGSSTYQKWSSESTYDSKGVASSVSKYSSWSSSYSNSYFKGGYSWTETVSGYDSESVTKAGVSTSNGNSWSWTRSGTVWDDGPNNWSESWSKSSWKDGKYAPGESEVTRGSFDPKGTQTQTNNLPEFGEAPRLNKAPKQQVPIDFQKPPKPSDDIWQLPPRTFTDTNPPEAPNFPDNWSAGSGGGNPKDSDVDIKAAIDYNNAQGYSKDAIRLIQRVVGAGQTGVFGEDTVRKIANWQSAHRLKRDGKVDSNTLWSIVTELRMRNQPLDALLLSRYVKTRQYVTDANRIIPTGYGPSGRTPGSGDAQSIVETLKKNRQLTLSGELKTVGDATTEYNCHGFTFLGGAEWIKNNSDVENIIKDNGYSVTSKPSVGDVVIYRDDNNKIQHSGIVAAVSGGQVTRVISKWAMYGLYEHNLKDVPLSYGQNTTVYKSNRTSGNFPQGLGAGRPGNHLLRPR
>NC_019729.1|WP_150111468.1|372256_373393_+|hypothetical-protein
MKAINCHNFQIWTIAFIEWNNSIKEDIVELKPLNAARIISGPGPKSFPARPYIKTYASPGGLASTVYKGDDETMPIALWVGDTARLISLSETPLDLSARSDGGVWISTHQTLLFHYDRAGALKHRVNLPGTNIVGVDGDAVWVMTDEKAWFVNVNGDVRGSYPWKGFNRSAGSKQAICQLERDKIRRIQCLEPDGSKHFVNISLPKSPSGKLLFFSDDKLLTGSIGSGDLGYYSTGGIAADLTIENAGMTGSGDAFISMRTDDDLAEVCLTKGTGQRFALKYKIPSFPLPVILSVLAVEGDRTLVYGADRAVWYKGSQIEKSFTVDDNVYRKEIFPHHWRTATNFVTANSSDGTIIISTSGPTGMALIGMRWHPEPQR
>NC_019729.1|WP_015174278.1|370845_372003_+|hypothetical-protein
MRTRNGQTVTVYKDGRKDETQTSSYERWWSDSNTDKGVTTYTSGSSTWSSTYRRTEFKGGYSWSETISGTNTESVTKGGVTTSKQTNWSWTRSGTVWDDGRNNWSESWSKSNWENGRSVPGESETARGSYDPKGTGTQTNNLPQAGEAPRLTKPPKDILELNKQPKYKPQPSQEFYELPIANPEIEKKFPGDFFAGNPAPRKPTFKEQIEKLLKSGAIANYNQIVGLIIQNNSLEDLRSVVGDVGMRTLIVDKFRQKPEMATAIMAALLKGMQRWQNPAPNDFVLHFDVDKSSDPMSYDANMNCWEMILYAAFLCGQITTSQIREFFKRAKYGPGFFSGMPMMGYDESLHSMSLYPAANNRQQSGPYNQDNFFFIELPIKEIQIM
>NC_019729.1|WP_015174277.1|368686_370051_+|WG-repeat-containing-protein
MSLVKRLRVLFYLALVAVFLIMTQLASSETSKSDNEKYGLIDKNGKYVVEPQFDGIDNFQEGLAEVMVDGKIGYIDRTGQVVIPFQFEWSTESFSEGLAVAKLKGSEKVGYIDKTGKYVIPPKFDRADSFHEGLAVVVVNYKYGYINKQGSYVIPPKFDYATEFREGIAVVQSAQKYGLIDRTGKYIAPPSFDHIHNSDAREGFSTAAEFKDGLMRVAVGGKLCYRGGVAGGKWGYIDRMGKLVIPLKFATVGEFYNGRAKVSMSALDCEAGSPIKWDYINQSGEYITRLLFDDAYNFSEGMAAVEIGGKSGYIDLSGKLVIPPQFISTREFSEGLAAINSSENGLYGYIDKTGKLLIAPQFNWAENFLNGSAMVQVNDKQGIIDKTGKYLIEPKFDLVSEFYEGLARVNLNEKWGYIARTGKLVIDVKFDSARDFDRGIAIVGVKQKTANKNS
>NC_019729.1|WP_015174276.1|362816_368666_+|DUF4114-domain-containing-protein
MSPIEASTPKLTANISLIPDIPEELQLANSTNNYYSPPKNLLTTNETSSTNSSIELLSSNNQILDNSPETPPQQAEIDAFILNKDSTPTTNNIPEKPQTSTTQTDAITGDTAKPATQNNISFDSGIFQADETGKILFDYLSDGGRYQGELAIISLTGMQEFVPDSEAFIREAARRALSNSSLGYIAISDITEAAKFSSFEGENNFNIGEYRGIKTFAMTPGDELGIIVVPNGTIQEAYNNPAIGGDKKPLFSMATANSSDAFQRGQIAAVANGGSIFVMEDMGIGEGSEADYNDIIFSLKGATPKVISMDDLIAKNSDWRTSEKGKELIGDAAPKTETKLEDKKADTTSATNPVETKPENSPATETKNPTVSETPNSETNPVETKTENSPVIEDKQPTVSEISHSETNPVETKTENSPATETQNPTVSETPNSETNPVETKTENSPVIEDKQPPVSENIYFPKNPVETEIDFITGDTIEKPVFIQPEKLEIPVIPAESTDILTGEMENTSPTPIDSLENAGETADNLPLISPDEISTLWESLNSILAQQFPNIPETESSQNHQPSASEYSEYIVTDSQTIIPEIAVTENYDSQPSENITADSENQPPTTIGEFVNPDFEWENIAITPEILSDANNQPDNSLHIIPDSEIATTTDSNSEPTISEYTITDTETQPEITPNLPQQNQPLIGIIDTGFVANNPNIDYSQIILGKDLIDGDNNPLLQPNEGNQHGNTILDIINDSSNQSDTKKSTPIWLGRATGSGNWYQSLIEFVDAAKAAKQPNAVVNLSFDLTQINPDGTQTTRHKLTAEETAALKYAKDNNILIVAAAGNEGNLVSALGQASTEFDNIITVGASENNYRAGYSSYGEGLDILAPCDIPQTAEAATTETKQGTSIAAAKVTNTLSQMWAANPSLDYLQIKNILLNTAKDIDVPDWDERTGYGILNSESAIATSAETIPTIPVLAAAKLLTKPLIDVGANTSNSPNSTEAKPSERATATTAPGTPKTTSRSTGDYNVGTSSYTTDLAPYKTTSTSSSNGTTTTNSRILSSLSNTESSWDKSTTKTNHKGESFDESTSDSTTNAVTYTSKSFSQNSTENKNQWQENRSRVKYEGTRSDSSESAQKSRSSYDYTTPTYTRYDASESYRNSKSQSNSRYGTNLSIYNGNRQDDWGSKSTTNTRTTNGNNISTSKSATQTAGNAKWTNGSNGSSSNNTHSGEETTVSTSNSTNSNSSGFSKSSNSNDGYSVTNSTWDNNTINGVAINSNTRDVYSESSTNNQSSYDDGRSKNHSYQDTYTVNQSEQTNSSQGSSYRQNNRNNNYSVRQGNDTQTYKHGPQTSSRITDSYSVTKSDGYSANSSGKVTSKNNQESYSENFVQHDSEYKIDAYTTTTTGDEQTITSTRSNSSNDGTNNASSSSSDTVRTRNGQTVTVYKDGRKDETQTSSYERWWSDNSTDKGVTTYTSGSSTWSSTYRRTEFKGGYSWSETISGTDTESVTKGGVTTSKQTNWSWTRSGTVWDDGRNNWSESWSKSNWENGKSIPGESETARGSYDPKGTGTQTDNLPKAGEAPRLNKPPKNVVDLNKQPKYKPQPSQEFYEQPASYDKKFADNFPTEDPYAAVPPPASWPPKDIGSYWLSYTGTLKSSAERRKIFQDIIKNRSIQKVYMNALSVGGTTFSYGGGMPITGGDIFAEFKEELDRYNLAHPNNRRTIDVIGWFEGTGLAASTSPMYKAAQRANAVLGLKGDGGASYVDLVHPTVWGELQNIAKDFISKHGGLVKEIIFDDRLGIPKAAEADVINLHRATIATDGGPGGKSWIQRALTKNLTNLKNALPSTTFSFSGNLPAVAFEHQNQELAKWLADGIINGGYNLQFYKNGSNYPVFVNDYNTYVPQMLRLLNQNKNRFSVSIGYYAQKEYLKRQELIQQISFLRNNKVASLLPSQIIGFDYRTIRDIQQ
>NC_019729.1|WP_015174274.1|358656_362178_-|hypothetical-protein
MLNANGSILTDNRSTASQWAGEALGLPEVQVQARLRGNHLHILCEAAQCPSQELVTARFTSALEQTDLTRLLPDRPKIYQLFLCGRKLGSRQNDWTVRLDCSSPKRQQQPQQPEPKVAEVPPPASSPTYEPPASPKRGGFFGRFKNNNQKLKQTPKPVETAAPPPQVREELDFDAESLPVASRIQYPEAFETSPVTIDTSAAATREAFSSTVPPQQKANRGAVALIQSPESDSGEGDRGGTLTVSPETLARRGYPDAIASYLSEILGPMGVSVKVSIREKELKSSRETLPVNAPENIKPKERRLLVLCESAYSPDPSLLAEPIAGRLRKLQLEDFREALIASQVSGEAKPDWLLRVDLTSPDKILKEWARWGDVQSIAKLLNQHLAASRVEVRATLKEATLHLFCSKTAKKGQKPKRQEYPDKQQTTDAIAPLLASFAPQGIRAATIYGVEPAKDSQAAPESPVWIDWVDLPAAHHPDLAPSTRTLAIEGDQLALTFLLNRLLNPNLRRKLETGGIRAVVLQKANVLHVMTEALTCPSQSKVGPPVAKFLRHLEIPGVAGVRVYGRRAGQKLPLWRYAIDLRTAVDEESATAPAPAPSQVAVLAKEPVPEFAPVEDGSFSGLGDNLVFDAPMPNSWRPRFKIRLPGYNLGEQLVQAAVQPLVASGLFVPNDGLSTNAAAPGGVRADRAAGMALIWAIAGCLLTFNTDWLLGRFLQSGAVSQAPSTSEVCSGPNCQNSSPKAADDVTSRLPKETPNPVPPAEEVNLPQTPLQPSPEANREEAFNGSGFTKPGNISVPVADVSAPPVFPTLRSKQLDDQIARYQEYIHLHKKPPDILIVGSSRALRGIDPAVLETALAASGYPGLTAYNFGVNGATLQVVDSIVRRILPPQQLPKLLVLADGARALNSGRPDLTFSAIASSEGYRQLSRGSFLIRTNQLESETSKESANNPVATATELVNNLEQTQANVQQLVSQKLVEGSAIYKKRDRLKGFLRSIVNPSAPAATDSPQTAAQGQQTTENAQPTAASKPVSEYQPNGFLPIDIRFNPETYFQNHPKVSGYYDSDYQNFKLAGEQALALKNLIEFTKVRNINLVFVNMPLTEDYLDPVRTGYEQEFRQYMQELAAQSGLIFLDKSLLWPQARESFSDPSHLNRYGAVAVSKRLAQDPMIPWPAKQ
>NC_019729.1|WP_015174273.1|355679_358550_-|zinc-dependent-metalloprotease
MKRLIFPENSKNQRIKIPIKNLPLIFFILSLAFFCFSLYKGFFLPLALSSGPPSNEQTSEQPTLAPFEQVVQDAQKLEGLFTLYRNQATDKVYLEIKPEQLNKKFLCFVTLASGLGEAGILSGMPIGDFLFQLRRVQNNVQFVIPNINFRTSPGDPQAGSVERGFSESILYSLPLKSIQAQRQTLLIDLGDLLMSEKRDLPGVKAILPMLLGASYSIDEDKSYFKDIKAFPLNVEIASIYGFSSDNDSAVNYLASIPDSRAFNLRIHYSFSEVPLNNGYRPRLADERVGYFLTAYKDFSDKSSREPFVRYINRWHLQKQIPTAPMSPPLVPIVFWIENNVPVEYRNAIREGVLEWNKAFEKAGFTEAIQVKQMPDNAKWDPADVRYNTIRWSSSFEPQFAGVGPSRTNPLTGEILDADILLDANVVREIKQGYRSLVEQNRSLSKSFQGRNGSNTNPCQFGMYSRYLNVLENGDLGKSSGENDRGGIADDLPTLVERYQEQKRSRLSRLMSSSDMCFGLESSRQFAIGAMSMDLLENAAPSSPAIDNYVNEYIRYLTAHEVGHTLGLRHNFHGSTMLQPEDLNNTQVTRTQGMIASVMDYVPINLAPAGTVQGDYFPTIVGPYDDWAIEYGYKVIGGVNPNSDLPALQQIASRAAEQQLAYAPDEDSVDLDPAANTFDLSANMLRYSQWQLDNARAMWKRLEKRIPVGGDGYNELRVMFDSVFGYYVNQVMNATLYVGGQSFSRIRPGDAKGKLPFVPIELSQQREALATLEKYVFAPDAFSFAPELLNKLAPSRWEHWGSPALVFPLDYPIGDRITFLQRFVLRVLLSPVRLARLRDAELKSAPETALRLPEVLDTVQKDIWQEVLQPEKKMQISTFRRSLQREHLAILIGMVLRKTSVPEDARSLAWYELRQLREGLSKSIRNLDRNADAYTRAHLEETRDRISKVLNSQIQSN
>NC_019729.1|WP_015174272.1|354802_355426_+|Uma2-family-endonuclease
MVAIAQKTLSFEEFLNWDDDSGRSFELLNGVAMPLSEPTAKHEDVVDGLCRLLVDHCQSLNLPYVPRQSKQVRLNAAPGESESSRKADIVVFAKEEWVRMRQSSASAAAYIPPPLAIEVVSTNWRDDYRIKLNEYETLGILEYWIVDCAGLGGVQYIGSPKQSTVTINRLIDGEYQAQRYQREVIIVSPTFPQLVLTIAQIVAMTEV
>NC_019729.1|WP_015174271.1|353591_354368_+|hypothetical-protein
MDLIIDTQILSYRFKGVETGLHDAKFAIASITANEFLIAQSKESEQPDYYIIHPAKYPNLEYSFSNIEHFSNPKSARLGARRTDQIIIDFGNHFSAYREFGNEAISEIINERKIDIYKLSISHLSKQKQKYLLRRLKYILDSGYYCYSLTKSSLEQALSLFSEFVSEHNCKGNIRNTVNDLLILSTAIDREKKFLTNDNLLNRFAAEYYEAPVEQREDKLLIDFSEKPLKKRKNRESKGYINKGWSYAVRNKRTSPEI
>NC_019729.1|WP_015174270.1|353209_353425_+|DUF433-domain-containing-protein
MFDTITVNPRQCGDRPCIRGMRIRVIDILELLAAGLSFEQIIEELPDLGLEDLKAALLYAVRKLDRPVLAA
>NC_019729.1|WP_190274315.1|378861_379020_+|hypothetical-protein
MADRTVRSTLPAIELLYAPSIGLSILGAIVVSSHFCVTSFRGYQHAPLPGVR
>NC_019729.1|WP_015174282.1|379134_379359_+|hypothetical-protein
MPSENQDLLKTQTPNSPKLSVPSDILLSLVALPMLGGLVVAKAAAEFVASIGVESEELFRGSRLPVLNFPQSQD
>NC_019729.1|WP_015174284.1|379781_382907_+|phosphoenolpyruvate-carboxylase
MSSVLQSSEQAIDATSISHSPAYSKSDLFLRNRLKVVEDLWESVLRQECGQELVDLLQQMRSVNSAEGQATHFRESNVVQLIEKLDLNAAIRAARAFALYFQLINIVEQHYEQRDQQLAYASSNDAGGRMFSKLPGQAMDAPDRPRHREGPGPAQMALNKADSSETIARDAGTFHQLFPMLLRLNVPSQQIQRLIDQLDIRLVFTAHPTEIVRHTIRTKQRRMAKILQQLDQVDEKFQVIGAESPSPYPVSCWEAAALQEQLMEEIRLWWRTDELHQFKPTVLDEVEYTLHYFEEVLFDAIPELYHRLKQALHASYPYLKPPSYNFCKFGSWVGSDRDGNPSVTPKVTWQTACYQRHLVLQKYISAVKRLNELLSLSLHWSDVLPELLESLDRDKSEFPDVYEQWAIRYRQEPYRLKLAYVQQRLENTRDRNWRLYKGDELQREREALSEHPGMTGLYRSGAEFLTELKLIEHNLVETGLSCRDLENLICQVEIYGFNLAYLDIRQESTVHSDALREIAEYLQILPKSYNQMSECDRVIWLATELQTRRPLIPAELPFSPKTCETINTFRVLRQMQQEFGPEICQTYVISMSHDVSDLLAVLLLAKEAGLYDPATGISNIQVVPLFETVEDLKKAPEVMEKIFDLPLYRALLAGGYAQEIAEKTEENIQCPIENIKLQEVMLGYSDSNKDSGFLSSNWEIHKAQKALQMVAEKHGVELRIFHGRGGSVGRGGGPAYKAILAQPGKSISGRIKITEQGEVLASKYSLPELALYNLETVATAVIQASLLHTGFDGIDPWNEIMEELSARSRSHYRHLIYEQPDLVDFFHQVTPIQEISQLQISSRPARRGGKKDISGLRAIPWVFSWTQSRFLLPSWYGVGTALQEFLLEEPEEHMKLLQYFYLKWPFFRMVISKVEMTLSKVDLQIAEHYVRELALPADKERFQTLFEQIAAEFHLIRGLVLTITGHQRLLDEDPSLQRSVQLRNATIVPLGLLQVSLLKRLRQHGSSGIPGVIHSRYSKGELLRGALLTINGIAAGMRNTG
>NC_019729.1|WP_015174286.1|384320_384878_-|HPP-family-protein
MIDSKKIRLKWESYWFKTFGRWSSCPLTCPVDRPHPRHIVWSWIGSFLAITATSYLAVKTNSPLLMAPFGATSVLIFGVPDSPLAQPRNVIGGNCLAALTSLMILHFVGSSPWAMGMAVSSAIGIMQITRTLHPPSGAVALVVMMTQPDWKFLLTPAFEGSIILVLCAVIFNNLAAERTYPNHWL
>NC_019729.1|WP_015174287.1|385260_385827_-|dihem-cytochrome-c
MKQEKPRKRRRVGLRGLYSTLLVLIIVCCTCGGWVAAQTAYSGTPARLAQVSPIEDTGTVDRIPERYQLGKQLYLENCATCHIALPPQVLPTETWRRLLQDPQHYGQTLKLLVDPPRLLVWNYLQTFSRPQAQDEELAYRVASSRYFKALHPKVKMSQPANISSCVTCHPGASQYNFRKLTAEWENSP
>NC_019729.1|WP_015174288.1|385847_386756_-|MBL-fold-metallo-hydrolase
MPDSAPSLPNPQPSDRKATMENSPLTEFVVQFWGVRGSIATPGTKTLRYGGNTSCVEMRLGKKRLIFDGGTGLRVLGLNLLRQMPVEAHMFFSHTHWDHIQGFPFFTPAFIPGNCFHIYGAIAPNGTTIKHRLADQMLHPNFPVPIQVMQSDLKFNDLTPGDILELDDVKIETALLNHPNTAIGYRVTWEGHTAVYCTDTEHFPDRLDDNVLHLARNADVLIYDANYTNEEYYDFKTPKVGWGHSTWQAGVEIAKAAGVKKIVMFHHDPGHDDNFLDRTEAEVQAAFANSCLAREGMSIPVI
>NC_019729.1|WP_015174289.1|387277_387790_-|inorganic-diphosphatase
MDLSLIPAQPKPGLLNVLIEITAGSKNKYEFDKDLQAFALDRVLSSSVQYPCDYGFIPNTLADDGDPLDGLVMMDEPTFPGCIIAARPIGMLEMIDGGDRDEKLLCVPDKDPRYAHYKSLKDVAPHRLDEIAEFFRTYKNLEKKVTEILGWQDVDLVMPLVEKCIAADRK
>NC_019729.1|WP_150111469.1|387856_388066_-|hypothetical-protein
MHNSLHGKYENISLAQTKHSPLKLWDGRPARPVFAESGTPHKPHPQIVPRRSHSPAFGQSHAAGRPDRP
>NC_019729.1|WP_015174290.1|388159_389569_-|serine/threonine-protein-kinase
MTSKILAERYEVQRQLGKQTGRQTLLARDLQTQKLVVIKQLFLGSDFEWQDLKLFQREAETLKALDHPAIPRYLDYLEIDEPDSKGFALVQTYVEGKTLEDHLRSGRTFSESEVKELAKSLLEILIYLHEQKPPVIHRDLKPSNILLHSRSGHSVGKVYLVDFGSVQNQAAKLGGTITVVGTYGYMAPEQFGGRSVPASDLYGLGATLIYLVTGLHPTELPQQDLRIQFADRVTHLNYNLIDWLEWITEPSLDQRLSSAGEAWHSLKNPRPIDQTPMELQPPGSEIKLTKNSEFIEIVIPPQGVGFGLVALLSAAIAANSPSFVNVFNLPEDDGTITNLPPIDSKLIMLAGGFLAVVGVMFLFALFRELRLRIDRQQISCSSNLLGLRWNHSKPAPRQDICQLEIEEIEDTRRYPPQKSWRAYQLIIQAGNQTYQLGVKQKLSESEIEWLATELSQWLGLKIQRTLTDG
>NC_019729.1|WP_015174291.1|389712_391017_-|serine/threonine-protein-kinase
MSGQNIGDLSKEILADRYQCDRRLGKQAGRQTLLARDLKTQQQVVVKLLSFSSDFNWEDLKLFQREVETLKSLSHPAIPRYLDSFEIDTPNRKGFALVQTYIEAKSLQEYLSDGRTFSESEVKQLAAALLDILAYLHQRQPPVIHRDIKPSNILLKNRSGNSVGEVYLVDFGAVQTLATQQGKTVTVVGTYGYMPPEQFGGRAVPASDLYGLGATLIALITKQHPADLPQKDLQIEFDEFTQLSPAFTNWLKWMTHPSLERRPASAQIAKEVLEKPQEINKYSQTLRLGKIVSSARVFATAIGYSTLTGAIAVGACAAIYSTFLMGILGTIIGGILGIVLGLLLGVENGIIVGIVTISSFYPLTNPKSHRQVLTAISIGISTLTSIVFFQMMHFSPVLDSNYIFVVIAPSLIAGLSMGASTKSIARWYQKESGL

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Crispr_ID: NC_019729_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_5

533394-533474

Orphan

Consensus_repeat	Method
CCTGTTCCACAAGAGATTAATGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_5

>merge|NC_019729|5|533394-533474|CRISPRCasFinder
CCTGTTCCACAAGAGATTAATGTTTTTGTTGCATTAATTTCAGCAACAGGCAAGATGCCTGTTCCACAAGAGATTAATTTA

>NC_019729|5|5|533394-533474|CRISPRCasFinder
CCTGTTCCACAAGAGATTAATGTT	TTTGTTGCATTAATTTCAGCAACAGGCAAGATG
CCTGTTCCACAAGAGATTAATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174393.1\|524374_525115_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NC_019729.1\|WP_150111475.1\|542179_542368_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174403.1\|536274_536499_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379366
NC_019729.1\|WP_015174401.1\|534764_535940_+\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225259
NC_019729.1\|WP_015174399.1\|530332_533149_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237257
NC_019729.1\|WP_015174411.1\|542936_543464_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174408.1\|539832_540549_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_019729.1\|WP_015174392.1\|523336_524323_-\|NADPH:quinone-reductase	unknown	unknown	gnl\|CDD\|176215
NC_019729.1\|WP_015174394.1\|525287_525857_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015174398.1\|529836_530091_-\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NC_019729.1\|WP_015174405.1\|538636_539158_+\|photosystem-I-assembly-protein-Ycf3	unknown	unknown	gnl\|CDD\|179448
NC_019729.1\|WP_015174407.1\|539341_539623_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_019729.1\|WP_015174404.1\|536692_538009_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215598
NC_019729.1\|WP_015174395.1\|525912_526821_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174400.1\|533555_534494_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246
NC_019729.1\|WP_015174391.1\|521093_523148_+\|protein-kinase	unknown	unknown	gnl\|CDD\|238121
NC_019729.1\|WP_015174397.1\|529604_529874_-\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NC_019729.1\|WP_015174396.1\|526971_527265_+\|DUF3288-family-protein	unknown	unknown	gnl\|CDD\|371670
NC_019729.1\|WP_015174390.1\|519609_520593_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	unknown	unknown	gnl\|CDD\|235431
NC_019729.1\|WP_015174409.1\|540505_542137_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174393.1\|524374_525115_-\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.01366e-119
NC_019729.1\|WP_015174403.1\|536274_536499_+\|hypothetical-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.00196429
NC_019729.1\|WP_015174401.1\|534764_535940_+\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|225259	COG2385, SpoIID, Sporulation protein and related proteins [Cell division and chromosome partitioning].	9.43731e-99
NC_019729.1\|WP_015174399.1\|530332_533149_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237257	PRK12902, secA, preprotein translocase subunit SecA; Reviewed.	0
NC_019729.1\|WP_015174408.1\|539832_540549_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	2.85475e-50
NC_019729.1\|WP_015174392.1\|523336_524323_-\|NADPH:quinone-reductase	gnl\|CDD\|176215	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.00571e-129
NC_019729.1\|WP_015174394.1\|525287_525857_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.196e-18
NC_019729.1\|WP_015174398.1\|529836_530091_-\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.22597e-16
NC_019729.1\|WP_015174405.1\|538636_539158_+\|photosystem-I-assembly-protein-Ycf3	gnl\|CDD\|179448	PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional.	2.515e-116
NC_019729.1\|WP_015174407.1\|539341_539623_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.32989e-35
NC_019729.1\|WP_015174404.1\|536692_538009_-\|hypothetical-protein	gnl\|CDD\|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	0.00107678
NC_019729.1\|WP_015174400.1\|533555_534494_-\|ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	7.10384e-159
NC_019729.1\|WP_015174391.1\|521093_523148_+\|protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.74253e-88
NC_019729.1\|WP_015174397.1\|529604_529874_-\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	1.2292e-23
NC_019729.1\|WP_015174396.1\|526971_527265_+\|DUF3288-family-protein	gnl\|CDD\|371670	pfam11691, DUF3288, Protein of unknown function (DUF3288). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.72825e-49
NC_019729.1\|WP_015174390.1\|519609_520593_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	6.54487e-163
NC_019729.1\|WP_015174409.1\|540505_542137_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.23153e-77

>NC_019729.1|WP_015174399.1|530332_533149_-|preprotein-translocase-subunit-SecA
MFKNLLGDPNARKLKKFQPWVADINILEEDIRALSDDGLRGKTAEFQERLAKARSLNEEKEILDEILPEAFAVVREAGQRVLGMRHFDVQILGGIILHKGQIAEMKTGEGKTLVATLPAYLNALNGKGVHIITVNDYLARRDAEWMGQVHRFLGLTVGLIQQGMDQVERKKNYNCDITYATNSEVGFDYLRDNMATVMEDVVQRPFNFCVIDEVDSVLIDEARTPLIISGQVERPSEKYIRAAEVAAALRKENEEHYEVDEKARNVLLTDEGFAEAERLLGVTDLYDPADPWAHYIFNAIKAKELFIKDINYIVTPDREVVIVDEFTGRVMPGRRWSDGLHQAIEAKERAEIQPETQTLATITYQNFFLLYPKLSGMTGTAKTEETEFEKIYNLEVTLIPTNRITSRTDLSDMVYKAEAGKWNAIAQECAEMHDIGRPVLVGTTSVEKSELLSRLLQERKIPHNLLNAKPENVERESEIIAQAGRKGAVTIATNMAGRGTDIILGGNSEYMARLKLREYFMPRIVQPEDEEGFSVVQVPGIGGRPAAQGFGQTAKKVKSWKASAQIFPTQISKETEQMLKAAVELAVREYGERSLSELQADDKIAVASEKAPTKDPVIQKLREAYKQIRHEYDAFTSTEHDEVVQLGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGERVAGLMKAFGVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGLDSKEQVIKYAEQTMDDIVGAYINPDLPSEEWELDKLVSKVKEFVYLLADMTPDQLEDLSVEEIKTFLHEQVRNAYDIKEAEVNAIRAELMRDAERFFILQQIDTLWREHLQQMDALRESVGLRGYGQKDPLIEYKTEGYELFLDMMTDIRRNVVYSLFQFQPQPAMQVSPEMV
>NC_019729.1|WP_015174398.1|529836_530091_-|DUF4160-domain-containing-protein
MPTILRIGPYRLYFYSHEPNEPPHVHIDRDKSSVKFWWEPVSLGNNLGFSAKELRKIQSVVQENKQTLLEAWYGYFGDSSGRES
>NC_019729.1|WP_015174397.1|529604_529874_-|DUF2442-domain-containing-protein
MGILAIRADERVKHIHFTEETISVDLMDGRIITVPLIWYPRLFHATPEQREKWEVCGGGYGIHWEEIDEDLSTEGMLRGAPAPRPKIPH
>NC_019729.1|WP_015174396.1|526971_527265_+|DUF3288-family-protein
MDSVEKTQDQQHPQYKRDRASVDSLLAGEATDYNLSELARLIIRYRGFPGARDIQSDLKKVLQKWNYTEESLYEKTRKIHAKGEVYRKQKSDQEDWL
>NC_019729.1|WP_015174395.1|525912_526821_+|hypothetical-protein
MEINQNPLELLTAKVRETVADTQNLANEIAAKVEKSATGLTAWVQSAPSSMVSAGAIATQEAFKIAHNIRFENLPRNLQLKFARAGVRDGIRDVQEAAKVFESIPAQIRAQGPEAIRNFCQDKDWSHIQAHVNGGGSEAANGIFEYFWVNRARGGADMTAAELAVAKQVLADAAFKAAVAEIVGAAMKGAIAAAVIELVFSILENSLLCVEGKITQSELVEQVATATAKAGIAGGVITGILLTLCMIFPPIAALLGAAAMPLAVAGIGFMGIRAWEIFCHGDRLFGITEQTQKFLGLTEAPN
>NC_019729.1|WP_015174394.1|525287_525857_+|tetratricopeptide-repeat-protein
MTANSELAEQYLSAGDRLQKSGKLEEAIAQYQKLLAIKTDEAVALNKIAEIYYTQQKYVEAIASCYQALRQQPNFAAAYKTLGNILQAQGKIDAAIRAYSKAIEFDPNLVEAYVNLGSMFYKQGLLDDAITYYQKSIALQPDLAVAYWNLGKTLEEQGRINEGLFYQKKALNLQPELEARSNSVKNNTY
>NC_019729.1|WP_015174393.1|524374_525115_-|SDR-family-oxidoreductase
MPSLAGKVAIVTGASRGIGRAIALRLSQEGASVVVNYARGAEQAKDVVSAIEAAGGKALAVQADVSKTAEIRDLFDRTIETYSQIDILVNNAGVILYKPVAEVTEAEFDNLFAINVKGTFFACQEAAKRMADGGRIVNFSSSTTAMLLPTYGAYVATKGAVEQLTRSLAKELGDRQITVNLISPGPTDTELFTVGKTAEQIQRFTQITALGRLGKAEDIADVTAFLCSEQARWITGQNIRVNGGIA
>NC_019729.1|WP_015174392.1|523336_524323_-|NADPH:quinone-reductase
MKAAYYEQIGDAKDVLKIGEMDVAELGASEVLIKVRASGINPSDVKQRSGWGGLTMRHQRVIPHNDGAGIIESVGESVPPSRIGERVWIYEATLPRRFGTAAEYAVVPSEQAVFLPDNTEFVEGACLGVPAMTAHNCVFKDGAVTGKTILVAGGAGAVGNYAIQLAKWGGANVISTVSSAEKAEIAKTAGADYTVNYKTENVAARIKEITKGEGVDRVIEVDFASNLETNLKVLKRNGAIATYASDSDITPQIPFYSLAYKNLTVHYVLVYVMDKAAHQQAAADITTCLKAGVFRHVIAQSFGLEEIVKAHEMQESGRAIGNLVLVIN
>NC_019729.1|WP_015174391.1|521093_523148_+|protein-kinase
MSYCTNPNCQNPQNLDRATVCKSCESNLLLKGRYRVFHTLGQSLACRTFLAVDEDQPSQPRCVIQQFCGPAAAADGQNQQNRTFRGSASVLDELGKHPQIPKLLASFEVEGCQYLVQEYIEGRNLADRLSEKGVVKEIQIWYLLSELLPVLQFVHEHQLIHGDIKPSNIIHRKTPQASPALAGKEDIHPLPQESASGLVLVDFGSAIPANSGPLKTETVTGSAEYAAPEQIKGQAIKSSDIYSLGVTCIHLLTGMSPFDLFDIKAESWTWRHYLKVPVSARLGRILDKMVQREPSKRYRSVEAILTDMKYGPAPVEVILSKPKWTVAVWAASTVALLSAVLGVRLPSPAPQAFTSSEPVSSIPDIRFNPPPMQDFRGEASQSRPAVRTLADRDKNPVWAVAVAPNGRVIVSGNNDGTIRLLHKRHGKVLKVLAGHLGPVWSVAVSPDGRTIASGGADGTIKLWNFYSGRLIQTLDGHTDGVFSVVFSPDSQTLASVGKDKTLKLWQVEGGAELETLKGVFGEVQSVAFSPDRETLALGSSDGKINLWNWQTGELKQTLWGHSEAVWSLAISPDGQTLASGSWDKTVKLWDISANNQSQQPNGSLLRTLIGHSDKVKSLAFSPDGDKLASADLSGTIKLWRMSSGEMAGTLKGHSTWVELAFNPQDKTLISGSFDDTIKVWRLSP
>NC_019729.1|WP_015174390.1|519609_520593_-|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP
MPLIRVPKPWEILDSQITPETAFLNRRRFMTNLIGAGVTASLLPLTGCQSNASSKTALEQSSTQAYAGLSRNPAFAKVDRAITDEALATKYNNFYEYGGTKSIWQAAQALPTENWKVEVSGLVKNPRTYDIDDLYKKFPIEERVYRFRCVEAWAMVVPWVGFPMKLLMADVEPKSNAKFVRFTSFYDPKITKGASLFSQFYPWPYTEGLRIEEMANDLAFFATGLYGRKLPKQNGAPLRQVIPWKYGFKGAKSIVKIEFVEQQPATFWNTIGPSEYAFEANVEPDKPHPRWSQASERIVGPGNSWSWETRPTLPYNGYGEYVASLYS
>NC_019729.1|WP_015174400.1|533555_534494_-|ribonuclease-Z
MQITFLGTSSGVPTRSRNVSSIALRLPQRAELWLFDCGEGTQHQFLRSDLKVSQLSRIFITHLHGDHIFGLMGLLASCGLAGNVKRIDIYGPPGLEEYLQAGVRYSQTHFSYPVKVHKIHEGVIYEDDEYIVSCGPLKHRVTAFGYRVTEKDRPGHFDVEKAKAVGIPSGPLYGQLKQGKTVKLSDGRQFKGTDFCGPDQIGRKFVYCTDTVFCDGAVQLAKDADLLVHEATFAHQDAQMAFDRLHSTSTMAAQVALTAGAKQLIMTHFSPRYAPGNAIVLDDLLEEAQAIFPNTKMAYDFLTYEVPRPVSN
>NC_019729.1|WP_015174401.1|534764_535940_+|SpoIID/LytB-domain-containing-protein
MQSGVFFASVLSTLKKRYFWISLLFWLAMVAPAQAALILRVAVQDGASQVKVGSSTKAAIRDGSGRNLGELPANSSQSAQFRSGTVAIGRWAANQVWIEPTGNGYVWIGDRWYRGRTLLVPEKGALTAVNYVDIEQYLYSVLGAEMSSNWPQEALKAQAVAARSYAIHQRLKSETELYDVDSTQSSQVYKGLQTESSSTYSAVDATAGQVLAYNGQIILAVFHSASGGHTENVEDVWTEPLPYLRAVPDFDQGAPVYQWKENFSRAQISSKISGVGNVISMKPERTTAYGSVLRMKVVGDGGSRVMTGADLRRVLNLRSTRFTVIPQYGGGGNPRNSGQAPIGFQVAGKGFGHAVGMSQWGAYNLARQGYGYQQILLHYYRGATLARIAVQ
>NC_019729.1|WP_015174403.1|536274_536499_+|hypothetical-protein
MQKWEYLFVDANMYPFGNKLISLYVNGEEQRDWKQGSLHLFVNHLGEEGWELVALDHDSKYDQNCLIFKRPKLI
>NC_019729.1|WP_015174404.1|536692_538009_-|hypothetical-protein
MAPNPTIMQAVEQLGYRVTVGDVAAKAGLDVNFAQRELLTLASEAGGNLQVAESGDIAYLFPKNFRDILRNKFLRLQLQEWWQKIWRVLFYLIRISFGIVLVASILLIFVAITILLSSGDSNNGGGGGGDGGGGGGRGGGFSFFPYFWNDLIWIFYWNHDEPYYQQRSRLTDQKPQMSFLEAVFSFLFGDGNPNHNLEERKWSDIATAIRNNRGAVAAEQIAPYLDNLGQGYSREYEQYMLPALARFDGRPEVSPEGQIVYHFPQLQTTATERNSEPVAAYLREMLWRFSNASSGQIMLAAGLGAVNIVGALVLGNLLSNSAIAGGFIGFVSAIYPILLIYGVGFLAIPLIRYFWIQWKNSRIESRNQKRQKRAMLLNEPDANLLKKLAYAREFAAENVLTGEDLAYTTETELTQQELEQSAKIDAEWQRRIDRSENL
>NC_019729.1|WP_015174405.1|538636_539158_+|photosystem-I-assembly-protein-Ycf3
MPRTQRNDNFIDKSFTVMADIILKIMPAKKQAKEAFAYYRDGMSAQADGEYAEALDNYHEALKLEEDPYDRSYVLYNMGLIHTSNGEHDKALEYYSEALELNPRMPQALNNIAVIYHYQGEKEKEAGNIEAAEGLFDKAADYWKEAIRLAPNNYIEVQNWLKTTGRSQIDVYF
>NC_019729.1|WP_015174407.1|539341_539623_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MIDREEVRKVANLARLELTPEEEEQFTGQLNGILDYFEQLSELDTSKVQPTTRAIDVSNVMRSDDLQPFPKRESILEGSPDRDGEFFKVPKIM
>NC_019729.1|WP_015174408.1|539832_540549_+|TrkA-family-potassium-uptake-protein
MYVLIGGAGMTGLGLAQQLLKVGHTVAIIDADPLACRFAREKIGVMAFEGSAVSTAVLLEAGIKQANAVVAALRDDALNLALITLSRSYGLSHIVVRMRDREFMEAYRLAGASHIISTIDLAVASMANAIEYPQIESMMHFEHGQVEVLKLPVPGDCKVAGRTVAQIAQDPRFPTGSLIIGYQCHACANLEIPNGNTVLESGSTILVVTRPELVHQMIDYLGIRASHLPTLEVSHPNL
>NC_019729.1|WP_015174409.1|540505_542137_-|sodium:proton-antiporter
MRGVSAIESIVAQAPPLGSNPATNSPTAGGIPELVIISIVLLLIATVVALVTQQLRIPYVTGLVLAGLPITEVLSRRIGLDPSLVLNLFLPILIFEAAINTDISRLRSTFKPIALLAGPGSIFSSAIIAVLVKFGLGLDWIPALLIGVILANTDTVSMIAVFKEIRVPSRLSTIVEGETLFNDAAALVSFNLILVVYATGSLTVVGGLKELLVVALGGGLVGVILGYLSLPIFVRLNDPLSSLLLTVALALGTFQIGQFFGVSGAVAVVIAGLIFGNLGLSRSTSASDRITLLSFWEYAGFGVNTFIFLLIGIEINPLTLWRILPSILFVILAYQLGRILSVYLLLAGLRWFDRPIPLRWQHILFLGNIKGSLSMALALSIPLGLTGRDNIIALVFGAVLFSLVGQGLSLPWMVKRLQISRVSDVMQEAGQLQIQLIASKAAQDELDSLLKSGVLPKAVYEELWASYQARVAQSERVLRDLYNQHRAGQPQGDRSGLDTIRRRLLLAEKGAVSDALRKRIVPEDLVEPYIKDLDEKLLRLADD
>NC_019729.1|WP_150111475.1|542179_542368_-|hypothetical-protein
MTIAAISDCCLCQVVWPQQEVMTIARIAQPTQKSCFSFISIHPNTPHELQLRLQHSQPSPVD
>NC_019729.1|WP_015174411.1|542936_543464_-|hypothetical-protein
MNYQNLKRASGLFTNHRNAKQALVELKSRGFPMHKISVIAKPSDNNDLESLGVKQILMTRAAGAQLGAILGSLRLGSLALIVGLSSLLIPGLGQAVAVESILATFFGSGIAATAGGLYGALQGWLVPEEQARVYNNRFNEGDYLIVVEARENEIVIAEPVLKRWEILTWRVCDAT

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Crispr_ID: NC_019729_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_6

542295-542380

Orphan

Consensus_repeat	Method
GCGATCGTCATTACCTCTTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_6

>merge|NC_019729|6|542295-542380|CRISPRCasFinder
GCGATCGTCATTACCTCTTGTTGGGGCCACACTACCTGACAAAGACAACAATCTGATATCGCTGCGATCGTCATTACCTCCTGTTG

>NC_019729|6|6|542295-542380|CRISPRCasFinder
GCGATCGTCATTACCTCTTGTTG	GGGCCACACTACCTGACAAAGACAACAATCTGATATCGCT
GCGATCGTCATTACCTCCTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174414.1\|547280_547667_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174417.1\|550285_550843_+\|DUF3124-domain-containing-protein	unknown	unknown	gnl\|CDD\|378638
NC_019729.1\|WP_015174419.1\|552636_554508_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|238121
NC_019729.1\|WP_015174401.1\|534764_535940_+\|SpoIID/LytB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225259
NC_019729.1\|WP_015174399.1\|530332_533149_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237257
NC_019729.1\|WP_015174411.1\|542936_543464_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174418.1\|551480_552440_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381311
NC_019729.1\|WP_015174408.1\|539832_540549_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_019729.1\|WP_015174416.1\|548926_550207_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015174400.1\|533555_534494_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246
NC_019729.1\|WP_015174398.1\|529836_530091_-\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NC_019729.1\|WP_015174413.1\|546743_547148_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NC_019729.1\|WP_015174415.1\|548230_548908_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019729.1\|WP_015174405.1\|538636_539158_+\|photosystem-I-assembly-protein-Ycf3	unknown	unknown	gnl\|CDD\|179448
NC_019729.1\|WP_015174407.1\|539341_539623_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_019729.1\|WP_015174404.1\|536692_538009_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215598
NC_019729.1\|WP_015174420.1\|554532_555099_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_019729.1\|WP_015174403.1\|536274_536499_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379366
NC_019729.1\|WP_041622334.1\|543684_546399_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NC_019729.1\|WP_015174409.1\|540505_542137_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174419.1\|552636_554508_+\|serine/threonine-protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.3519e-117
NC_019729.1\|WP_015174401.1\|534764_535940_+\|SpoIID/LytB-domain-containing-protein	gnl\|CDD\|225259	COG2385, SpoIID, Sporulation protein and related proteins [Cell division and chromosome partitioning].	9.43731e-99
NC_019729.1\|WP_015174399.1\|530332_533149_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237257	PRK12902, secA, preprotein translocase subunit SecA; Reviewed.	0
NC_019729.1\|WP_015174418.1\|551480_552440_+\|aldo/keto-reductase	gnl\|CDD\|381311	cd19085, AKR_AKR11B3, Synechococcus sp. aldo-keto reductase (SakR1) and similar proteins. Synechococcus sp. SakR1 is a founding member of aldo-keto reductase family 11 member B3(AKR11B3). It is responsible for methylglyoxal detoxification.	2.06394e-145
NC_019729.1\|WP_015174408.1\|539832_540549_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	2.85475e-50
NC_019729.1\|WP_015174416.1\|548926_550207_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.07075e-58
NC_019729.1\|WP_015174400.1\|533555_534494_-\|ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	7.10384e-159
NC_019729.1\|WP_015174398.1\|529836_530091_-\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.22597e-16
NC_019729.1\|WP_015174413.1\|546743_547148_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	8.51902e-08
NC_019729.1\|WP_015174415.1\|548230_548908_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.39861e-79
NC_019729.1\|WP_015174405.1\|538636_539158_+\|photosystem-I-assembly-protein-Ycf3	gnl\|CDD\|179448	PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional.	2.515e-116
NC_019729.1\|WP_015174407.1\|539341_539623_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.32989e-35
NC_019729.1\|WP_015174404.1\|536692_538009_-\|hypothetical-protein	gnl\|CDD\|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	0.00107678
NC_019729.1\|WP_015174420.1\|554532_555099_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.02266e-22
NC_019729.1\|WP_015174403.1\|536274_536499_+\|hypothetical-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.00196429
NC_019729.1\|WP_015174409.1\|540505_542137_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.23153e-77
NC_019729.1\|WP_015174417.1\|550285_550843_+\|DUF3124-domain-containing-protein	gnl\|CDD\|378638	pfam11322, DUF3124, Protein of unknown function (DUF3124). This bacterial family of proteins has no known function.	3.13411e-74
NC_019729.1\|WP_041622334.1\|543684_546399_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NC_019729.1|WP_015174409.1|540505_542137_-|sodium:proton-antiporter
MRGVSAIESIVAQAPPLGSNPATNSPTAGGIPELVIISIVLLLIATVVALVTQQLRIPYVTGLVLAGLPITEVLSRRIGLDPSLVLNLFLPILIFEAAINTDISRLRSTFKPIALLAGPGSIFSSAIIAVLVKFGLGLDWIPALLIGVILANTDTVSMIAVFKEIRVPSRLSTIVEGETLFNDAAALVSFNLILVVYATGSLTVVGGLKELLVVALGGGLVGVILGYLSLPIFVRLNDPLSSLLLTVALALGTFQIGQFFGVSGAVAVVIAGLIFGNLGLSRSTSASDRITLLSFWEYAGFGVNTFIFLLIGIEINPLTLWRILPSILFVILAYQLGRILSVYLLLAGLRWFDRPIPLRWQHILFLGNIKGSLSMALALSIPLGLTGRDNIIALVFGAVLFSLVGQGLSLPWMVKRLQISRVSDVMQEAGQLQIQLIASKAAQDELDSLLKSGVLPKAVYEELWASYQARVAQSERVLRDLYNQHRAGQPQGDRSGLDTIRRRLLLAEKGAVSDALRKRIVPEDLVEPYIKDLDEKLLRLADD
>NC_019729.1|WP_015174408.1|539832_540549_+|TrkA-family-potassium-uptake-protein
MYVLIGGAGMTGLGLAQQLLKVGHTVAIIDADPLACRFAREKIGVMAFEGSAVSTAVLLEAGIKQANAVVAALRDDALNLALITLSRSYGLSHIVVRMRDREFMEAYRLAGASHIISTIDLAVASMANAIEYPQIESMMHFEHGQVEVLKLPVPGDCKVAGRTVAQIAQDPRFPTGSLIIGYQCHACANLEIPNGNTVLESGSTILVVTRPELVHQMIDYLGIRASHLPTLEVSHPNL
>NC_019729.1|WP_015174407.1|539341_539623_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MIDREEVRKVANLARLELTPEEEEQFTGQLNGILDYFEQLSELDTSKVQPTTRAIDVSNVMRSDDLQPFPKRESILEGSPDRDGEFFKVPKIM
>NC_019729.1|WP_015174405.1|538636_539158_+|photosystem-I-assembly-protein-Ycf3
MPRTQRNDNFIDKSFTVMADIILKIMPAKKQAKEAFAYYRDGMSAQADGEYAEALDNYHEALKLEEDPYDRSYVLYNMGLIHTSNGEHDKALEYYSEALELNPRMPQALNNIAVIYHYQGEKEKEAGNIEAAEGLFDKAADYWKEAIRLAPNNYIEVQNWLKTTGRSQIDVYF
>NC_019729.1|WP_015174404.1|536692_538009_-|hypothetical-protein
MAPNPTIMQAVEQLGYRVTVGDVAAKAGLDVNFAQRELLTLASEAGGNLQVAESGDIAYLFPKNFRDILRNKFLRLQLQEWWQKIWRVLFYLIRISFGIVLVASILLIFVAITILLSSGDSNNGGGGGGDGGGGGGRGGGFSFFPYFWNDLIWIFYWNHDEPYYQQRSRLTDQKPQMSFLEAVFSFLFGDGNPNHNLEERKWSDIATAIRNNRGAVAAEQIAPYLDNLGQGYSREYEQYMLPALARFDGRPEVSPEGQIVYHFPQLQTTATERNSEPVAAYLREMLWRFSNASSGQIMLAAGLGAVNIVGALVLGNLLSNSAIAGGFIGFVSAIYPILLIYGVGFLAIPLIRYFWIQWKNSRIESRNQKRQKRAMLLNEPDANLLKKLAYAREFAAENVLTGEDLAYTTETELTQQELEQSAKIDAEWQRRIDRSENL
>NC_019729.1|WP_015174403.1|536274_536499_+|hypothetical-protein
MQKWEYLFVDANMYPFGNKLISLYVNGEEQRDWKQGSLHLFVNHLGEEGWELVALDHDSKYDQNCLIFKRPKLI
>NC_019729.1|WP_015174401.1|534764_535940_+|SpoIID/LytB-domain-containing-protein
MQSGVFFASVLSTLKKRYFWISLLFWLAMVAPAQAALILRVAVQDGASQVKVGSSTKAAIRDGSGRNLGELPANSSQSAQFRSGTVAIGRWAANQVWIEPTGNGYVWIGDRWYRGRTLLVPEKGALTAVNYVDIEQYLYSVLGAEMSSNWPQEALKAQAVAARSYAIHQRLKSETELYDVDSTQSSQVYKGLQTESSSTYSAVDATAGQVLAYNGQIILAVFHSASGGHTENVEDVWTEPLPYLRAVPDFDQGAPVYQWKENFSRAQISSKISGVGNVISMKPERTTAYGSVLRMKVVGDGGSRVMTGADLRRVLNLRSTRFTVIPQYGGGGNPRNSGQAPIGFQVAGKGFGHAVGMSQWGAYNLARQGYGYQQILLHYYRGATLARIAVQ
>NC_019729.1|WP_015174400.1|533555_534494_-|ribonuclease-Z
MQITFLGTSSGVPTRSRNVSSIALRLPQRAELWLFDCGEGTQHQFLRSDLKVSQLSRIFITHLHGDHIFGLMGLLASCGLAGNVKRIDIYGPPGLEEYLQAGVRYSQTHFSYPVKVHKIHEGVIYEDDEYIVSCGPLKHRVTAFGYRVTEKDRPGHFDVEKAKAVGIPSGPLYGQLKQGKTVKLSDGRQFKGTDFCGPDQIGRKFVYCTDTVFCDGAVQLAKDADLLVHEATFAHQDAQMAFDRLHSTSTMAAQVALTAGAKQLIMTHFSPRYAPGNAIVLDDLLEEAQAIFPNTKMAYDFLTYEVPRPVSN
>NC_019729.1|WP_015174399.1|530332_533149_-|preprotein-translocase-subunit-SecA
MFKNLLGDPNARKLKKFQPWVADINILEEDIRALSDDGLRGKTAEFQERLAKARSLNEEKEILDEILPEAFAVVREAGQRVLGMRHFDVQILGGIILHKGQIAEMKTGEGKTLVATLPAYLNALNGKGVHIITVNDYLARRDAEWMGQVHRFLGLTVGLIQQGMDQVERKKNYNCDITYATNSEVGFDYLRDNMATVMEDVVQRPFNFCVIDEVDSVLIDEARTPLIISGQVERPSEKYIRAAEVAAALRKENEEHYEVDEKARNVLLTDEGFAEAERLLGVTDLYDPADPWAHYIFNAIKAKELFIKDINYIVTPDREVVIVDEFTGRVMPGRRWSDGLHQAIEAKERAEIQPETQTLATITYQNFFLLYPKLSGMTGTAKTEETEFEKIYNLEVTLIPTNRITSRTDLSDMVYKAEAGKWNAIAQECAEMHDIGRPVLVGTTSVEKSELLSRLLQERKIPHNLLNAKPENVERESEIIAQAGRKGAVTIATNMAGRGTDIILGGNSEYMARLKLREYFMPRIVQPEDEEGFSVVQVPGIGGRPAAQGFGQTAKKVKSWKASAQIFPTQISKETEQMLKAAVELAVREYGERSLSELQADDKIAVASEKAPTKDPVIQKLREAYKQIRHEYDAFTSTEHDEVVQLGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGERVAGLMKAFGVEEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGLDSKEQVIKYAEQTMDDIVGAYINPDLPSEEWELDKLVSKVKEFVYLLADMTPDQLEDLSVEEIKTFLHEQVRNAYDIKEAEVNAIRAELMRDAERFFILQQIDTLWREHLQQMDALRESVGLRGYGQKDPLIEYKTEGYELFLDMMTDIRRNVVYSLFQFQPQPAMQVSPEMV
>NC_019729.1|WP_015174398.1|529836_530091_-|DUF4160-domain-containing-protein
MPTILRIGPYRLYFYSHEPNEPPHVHIDRDKSSVKFWWEPVSLGNNLGFSAKELRKIQSVVQENKQTLLEAWYGYFGDSSGRES
>NC_019729.1|WP_015174411.1|542936_543464_-|hypothetical-protein
MNYQNLKRASGLFTNHRNAKQALVELKSRGFPMHKISVIAKPSDNNDLESLGVKQILMTRAAGAQLGAILGSLRLGSLALIVGLSSLLIPGLGQAVAVESILATFFGSGIAATAGGLYGALQGWLVPEEQARVYNNRFNEGDYLIVVEARENEIVIAEPVLKRWEILTWRVCDAT
>NC_019729.1|WP_041622334.1|543684_546399_-|cation-transporting-P-type-ATPase
MTATNVEKLLEHSWHHLSVEKVARLLESDLETGLSSDAAAQRREILGPNQLTAQKPQSAWLRFFHQLNQPLIYILLASGIVTAFLKEWIDSGVILGVALTNATIGFVQESKAENAIAALAKSVATEATILRNGQKQVVSSSELVPGDLVLLSSGDKVSADLRLIEVRDLQVDESALTGESVPVQKQSRALEADVPLADRTNMAYTGSLVTFGQGRGLVVSIGDMTETGHISQLMQQSTALETPLSRKIDKFSKTLLYVILGLAAFTFAAGIAQRFSWVEVFKASVALAVSAIPEGLPAILTVTLAIGVSRMANQHAIIRKLPAIETLGSTTVICSDKTGTLTENQMTVQEIDAGGKRYRVSGGGYAPDGKISVNGHSVDLANAPALYECLQAGLLCNDSYLDVQDGNWTAIGSPTEGALVAVAQKAGLITEKLEEALCRLDTLPFESQFQYMATLHDDRPERLIYVKGSIEAILKRCHQMLDEEGEPIALNRAPIEETVDRMAKKGLRVLALAKKVVPASQSSIDHSDIEQGLTFLGLQGMIDPPRPEAIQAIQACQSAGIQVKMITGDHAKTAAAIAHQMGLNQTQEAPVFTGQELAQMNPQQFANAVEQCCVFARVAPEQKLRIVEALQSKGEIVAMTGDGVNDAPALKQADIGVAMGITGTEVTKEAADMILTDDNFASIEKAVEEGRTVYKNLLRAIAFILPVNGGESMTILIAVLLATPLPILPVQILWLNMVSSVALSLPLAFEPPSPDVMQQPPRPANEPLLSRRLTARILTVSVFNWIAIFGMFEWIVQTTGNEALARTMAIQALVAAEAFYLLSISRFVPAIAAKLRGKDESVGYAVAIGIAAIFILQFLFSQWGIMNQLFDTQALNTIQGLICIGFGLPMIPLSALLKRFAPLN
>NC_019729.1|WP_015174413.1|546743_547148_+|BON-domain-containing-protein
MQLLKLLVQGISVSTVAILGLGACNPPNNSQTTVPSTSAPTIATGNTTAPTPPAPATTPAQTAQNQDIDDIADRVEDALDSDGTLKQFDLDADDRGNSIVLTGRVQTAEQKALAEQIARQVAANVSINNEIVFQ
>NC_019729.1|WP_015174414.1|547280_547667_-|hypothetical-protein
MWQVTKRWLKASGAEFWLPLPFVAIAFWVGSSFLMAQELQQPQIAEKKLQADTQLKATVSVNILLINAVINRKQGTTQVAVETAEPILKRLELELPMTDATQIEKAIAQELQLSRQNIRQLVRYEIVE
>NC_019729.1|WP_015174415.1|548230_548908_+|response-regulator-transcription-factor
MRILLVEDDPKQLMPLQTVLSQAGHSVDGVKDGETAQWLLSEKDYDLLILDWMLPHISGVNICRQYRSAGKTAPILMITARDTTPEKVTGLDAGADDYLVKPIDLVEFMARVRALRRRSPLWQGDTLSLEDLHLHLDTLTVERQGATVSLSSREFQLLEYFMRHPRQVLTRNQIEQAVWEWGTEPESNAITVLVRKLRQRLQAVGSADWIESIYGMGYRLTSPQK
>NC_019729.1|WP_015174416.1|548926_550207_+|HAMP-domain-containing-histidine-kinase
MFNQSRRNLARWFALSMGSILVLFAGVIYQIEVKDKLEALDLLLYDKSRIMAASVYYEVRQNQNQVDLSHVPLLGSGSYPVAEDLIYVRWYNAQRRLVRFFGTPPSEQLNTPFGYLTVRSTDPLLGKEIWLRQVTLPVEGRTGVLGYLQVATPLTETQNRLTQHQIVLTLAVPIALGLIALTGWFLSGLAMQPIRQAYQQLQRFTADASHELRSPLSAILTNAQLGLMIATDDSRYHPPLENIVDSAKSMGLLVNNLLLLARHQGRLVPESLKLLNLNDLLGNLVTQFAPLAQSQNLKLTYKPSEQRSELWADPDLLRQVVENLLNNACKYTPAGGMVQLRLIFHPGSAIIQVLDTGIGIPESDLPYIFDRFYRVDTERSLDSGGFGLGLAIVQQIVEAHGGKIHVTSEVGKGSTFQIELPLKPYR
>NC_019729.1|WP_015174417.1|550285_550843_+|DUF3124-domain-containing-protein
MKLKQHFWVGWAIGAIVITSCWEQTTSQRQQPDTKPETSLRSVTLDKTKVVMGQTVYVPIYSHIYHFNSQNNVMNLSATLSIRNTDLTNSIIITSVRYYDTDGKLIRQDIKSPVELKPLASTDFFIAADDTSGGSGANFIVEWVAEKTVYDPVIEAVMISTSSSQGISFISPAKVLKQHKIQNRF
>NC_019729.1|WP_015174418.1|551480_552440_+|aldo/keto-reductase
MEKRELGTSEIEITPIIMGSWQAGKQMWVGIEDAKTVKAMRAAFEAGITTFDTAEEYGEGHAEQIIGQALSDLRSQVVYASKVFANHLKPDLLIEACDRSLKNLNTDYIDLYQIHWPAGTWNSELVPIAETMDALNKLKEEGKIRAIGVSNFSRAQIEEAAQYGRIDSLQPPYSLFWRWVEKDAMSYCADNHISILAYSSLAQGILTGKFGPEHKFEEGDHRAKNKLFLKENYDRVQTALNQLRPIADRHQTSLGNLALAWLISQPQTNAIVGARDGEQAAENAKAVEVKLSEEELKEIDAIGRTVTDYLDDNPVMWNF
>NC_019729.1|WP_015174419.1|552636_554508_+|serine/threonine-protein-kinase
MSYCLNPNCSQPQNPPAAKICRNCRSKLLLRDRYRAIKAIGQGGFGRTFLAVDEDKPSKPRCVIKQFLPAETQLIPSASNRNSKKAAELFEQEAMRLDELGKHPQIPELLAYSIQDSRQYVVQEFIDGQNLAQIVETEGRFTENQILDLLNSLLPVLHFIHSHNVIHRDIKPGNIIRRPDQQLVLVDFGAAKIATGTALLKTGTSIGSPEYIAPEQARGKAFFTSDLYSLGVTCLYLLTQVSPFDLFDPGEDAWIWRQYLANNPVSEQLGKILDKMIENAANRRYQTAVEVLKEINPQVAIDLAIPQINSKLVKPGKTPAQPQKQTYNWQCLHTLTGHKNLIYSVAFSPNGEVVASGSDDKTIKLWRVEDGQEIVTLTGHANSVYTVAFSPDGQMLASSSHDKTVKLWRMKDGQEIRTLRGHINSVYGAAFSPDGEIIASSSWDQTIKIWRVKDGQEIRTLAGHINLVYFVAFSPDGETLASSSWDRTVKIWRVKDGKLIRTLTGHTDSVRCVAFSPNGEFLASGSHDNTIKIWWVKDWQEVLTIAGHSWYVDSIAFSPDGEIMASSSNQTIKIWRVKDGQELCNIGGHNNSVYSVNFSPEGEFLASGSSDKTIKIWQNMMFV
>NC_019729.1|WP_015174420.1|554532_555099_+|GNAT-family-N-acetyltransferase
MIKIVTKRFLLRDFVDADRSPFLEYQADPRNQTFYEPAQSTPDRAARLFEMFQAWADDRPRLNYQLAIVQRQEPYALVGCCGLRGELCETGEMEFGLELAPAYWGRYAYAIEAGRALLDFGFTELDLKAISGSTVSANTRIARLAEWIGAEVVATRPGSSWMSDRGWSEVDWRIARAQWEHRTRRHGQ

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Crispr_ID: NC_019729_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_7

603426-604860

TypeIII

Consensus_repeat	Method
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	PILER-CR
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CRISPRCasFinder
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CRT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	PILER-CR
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	PILER-CR

19 spacers

csx1,cmr5gr11,cmr4gr7,cas10,WYL,c2c9_V-U4,RT,Cas9_archaeal

The CRISPR arrays of NC_019729_7

>merge|NC_019729|7|603426-604860|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACTACTTGAAAGTATTGTAACCATCACAAATGTTAGTCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACTCCACTATTTTCGTATTAATTCTAGCAGGATTAACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAGCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAGCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACGCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCAGACCCCCACTCGTCGTAAAAATGCGATAAGTGCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAAATAAAACTCCTCCAAAATCTGGAATTTTATAACCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCAGAAGTATCGGTGTCAATAATATCGAAACATTGACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATTCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCAAAAAGGTAATGCTCGTATATTTCTACATTGCTACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATTCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAGCTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACTCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAACTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACTTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGGCTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACAGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACACTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACAGGAGACACTGGAGTTCTGTCATATTTTCACCCCGCTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC

>NC_019729|7|1|603426-604036|PILER-CR
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TACTTGAAAGTATTGTAACCATCACAAATGTTAGT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TCCACTATTTTCGTATTAATTCTAGCAGGATTAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCAGAAGTATCGGTGTCAATAATATCGAAACATTGACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACTCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAACTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG


>NC_019729|7|7|603426-604860|CRISPRCasFinder
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TACTTGAAAGTATTGTAACCATCACAAATGTTAGT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TCCACTATTTTCGTATTAATTCTAGCAGGATTAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGAAGTATCGGTGTCAATAATATCGAAACATTGA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC

>NC_019729|7|1|603426-604860|CRT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TACTTGAAAGTATTGTAACCATCACAAATGTTAGT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TCCACTATTTTCGTATTAATTCTAGCAGGATTAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGAAGTATCGGTGTCAATAATATCGAAACATTGA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC

>NC_019729|7|2|604146-604554|PILER-CR
	TACTTGAAAGTATTGTAACCATCACAAATGTTAGT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TCCACTATTTTCGTATTAATTCTAGCAGGATTAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCAGAAGTATCGGTGTCAATAATATCGAAACATTGACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACTCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAACTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG


>NC_019729|7|3|604591-604860|PILER-CR
	TACTTGAAAGTATTGTAACCATCACAAATGTTAGT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	TCCACTATTTTCGTATTAATTCTAGCAGGATTAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACAATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGCCTCCCCACTCGCTGGGGAAACTAATTGAATGGAAACCAGAAGTATCGGTGTCAATAATATCGAAACATTGACTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC
CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC	CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAACTCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAACTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC	AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG
CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174452.1\|608980_610468_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174446.1\|599731_601456_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174441.1\|594528_595707_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019729.1\|WP_041622872.1\|585622_588727_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369468
NC_019729.1\|WP_041622339.1\|595952_597512_+\|CRISPR-associated-protein,-Cmr2-family	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|274208
NC_019729.1\|WP_083888225.1\|611497_611641_+\|RRXRR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379519
NC_019729.1\|WP_015174447.1\|601458_602955_+\|hypothetical-protein	csx1	mkCas0108_csx1_CAS-III	unknown
NC_019729.1\|WP_041622873.1\|606350_606953_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019729.1\|WP_015174444.1\|598473_599307_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NC_019729.1\|WP_015174449.1\|605424_606033_-\|transposase	unknown	unknown	gnl\|CDD\|376616
NC_019729.1\|WP_015174438.1\|583221_584313_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_019729.1\|WP_015174445.1\|599310_599739_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NC_019729.1\|WP_015174440.1\|589737_594336_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NC_019729.1\|WP_015174451.1\|607244_608906_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_019729.1\|WP_015174455.1\|612217_613930_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_019729.1\|WP_015174453.1\|610536_610710_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622874.1\|616018_619690_+\|DUF4347-domain-containing-protein	unknown	unknown	gnl\|CDD\|372982
NC_019729.1\|WP_015174454.1\|610828_611233_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174443.1\|597487_598474_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370625
NC_019729.1\|WP_015174456.1\|613916_615173_+\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|379519

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_041622873.1\|606350_606953_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.03827e-37
NC_019729.1\|WP_015174441.1\|594528_595707_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.21073e-15
NC_019729.1\|WP_041622872.1\|585622_588727_+\|hypothetical-protein	gnl\|CDD\|369468	pfam07690, MFS_1, Major Facilitator Superfamily.	0.000787116
NC_019729.1\|WP_041622339.1\|595952_597512_+\|CRISPR-associated-protein,-Cmr2-family	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	1.55241e-14
NC_019729.1\|WP_015174443.1\|597487_598474_+\|hypothetical-protein	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	0.000609907
NC_019729.1\|WP_083888225.1\|611497_611641_+\|RRXRR-domain-containing-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	8.80954e-13
NC_019729.1\|WP_015174444.1\|598473_599307_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.40164e-26
NC_019729.1\|WP_015174449.1\|605424_606033_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.61485e-08
NC_019729.1\|WP_015174438.1\|583221_584313_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.71652e-44
NC_019729.1\|WP_015174440.1\|589737_594336_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	5.62412e-98
NC_019729.1\|WP_015174451.1\|607244_608906_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.3386e-56
NC_019729.1\|WP_015174455.1\|612217_613930_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.88912e-145
NC_019729.1\|WP_015174456.1\|613916_615173_+\|HNH-endonuclease	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	6.95493e-71
NC_019729.1\|WP_041622874.1\|616018_619690_+\|DUF4347-domain-containing-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	3.52378e-68

>NC_019729.1|WP_015174447.1|601458_602955_+|hypothetical-protein
MNIWIVTTGSSDVKLKTDDNWGSLFKKVRSQLYDRRFVPTRPPNTDDDEPFIVPARAMGMVYGSQLTDEYYEDLHFPLLDAFSAKLLEKGKTNPDQIILIMTDQKAVFDEEDRRVEKSPYWQDTCTLKPIFEQYFKKKFPKIESIDYLELKPKSKDEGLDSWNKALFLVQQALSSLDLDKSANFYVSHQAGTPAISSAVQFETLAKFGKKVKFLVSNEYEPDLAKKGDFIESSTYLQGMQVQEAKALLSRYDYLGVERILKPYWKDSSDPLLLEIRDLLAMAVQWNFAKFEDFGKARGDVAKERLNQWWWTGYEAAYLGVIRLRQGNTVEALFHSFRAVEGSIKEWALDKYKPQIKYSNPNQPSTAYIHDVNLPQNLRSWFNANKNEQYNSVGLFGKSLFTLLEKSDQNKWNQDSHIKVVAANTIDERNFIFHSLRGLQEKDVFKAWNTDSREQWEARVLGCLNFVSPQSFVSLKSASLMAKVHDELVAALARYELQT
>NC_019729.1|WP_015174446.1|599731_601456_+|hypothetical-protein
MSDSDRVPLMFRSQLEGRGKIQYAGDAGPASEWVQQWLECCPPVPESADESVPLYKRGRTKSPVKMPEFGQGVETKQYTISWRLVTNSGQDEGVIRPIIGAKGLPFYPGSSMKGAFWRSCPPEKREGYCGGEVVEDGQRSAKPGILRFHGGFPADMSWGEKERLVDVVHSQQKRQVMENAVTSANVQISLYQCKLQFGISSNKQLGKQEWEEIWQIWEKALGHGIGSRVSAGYGRMAEVESADRILLSVNLSGCGLTSQLLNRTPEFRPNMFKAALRGHTLRLLAGVTDANTAQLLTKKLWGGIVETRDDTGAIIGQLGINFTAEELDFGEHKYYPTRNPVVMPTYALQAGILDIVNLNNRYPQKELKKFVTYLIKFSLLLGGFGKSWRRVDHSLFFPEYFKRNDKPAIGCHWKFNESSKNLYVTAANPDLSNITKFLAEGQQRAIEWLTVNHLEPSHQVMAWREVWHPEKVEVWGRIAEDQHSSEAIKWFHGPYSKNQSIKQSDLTGKLNNIGRIWHRMYPRYLTTKNGELRQKRQEYVELLTIFPDKSDKTQDFLEFLQNQSDFIKLWPTEE
>NC_019729.1|WP_015174445.1|599310_599739_+|hypothetical-protein
MAWESYKLDQEAHDLVVKYRDKKDALNQAYKMRVAVAYGLERFWGEQFRLVKDRDKADYWRDTWKALVKIMANAGVKIPNDNVSSDDTAAIKIMANKLWEFPVEQRKVAIAVLTQLCDSMVWWTQRYKPTKNNGNNGGEEDE
>NC_019729.1|WP_015174444.1|598473_599307_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYKKAYGIIETLAPVHVGATAGEESGNLNLICRDQFTQTGIIPGSSIRGRLRSEIRRSLGEAEANKWYGQEAESGKPDSTTESVVKFEYASLLWLPVFCPGQPIVWVTCPRLLKRYQRIAGDYVKLKDGTSLKSAKPPANYTGSQTLKALDINGKPKLFFNFGFLTVEKTQDLSAWFPLGEELPAVVVADDEIAMIHDMALYRQSRVALDKEEKKAKKGAFFNTEALPEGTILVFPIALKENQETWQPFGASTGTDIYLGGLESIGFGHCYLTLKEV
>NC_019729.1|WP_015174443.1|597487_598474_+|hypothetical-protein
MFKYLITISPLGFMYGSSGGFLSPENLVGRSGAKFPPEAATLSGLFFSTNKVKSYISPKELSDNLCVAGPFWAKSDAPEYFYVPIPWHKIISKKGVDEWKMKSGKWHRESEDLDPEYSWQTVNSWVNKTAAIKKNDDVADIPWKYVPILHPKTKDDERCTLAEDGLFLENSVQMDDEFCLVYLSTHPLADGWYRFGGENHLVEIKSVLLDEDSPIVKLLRQPIQRSFALITPGVWGSNKFSYRYPKNEYFSQKRPEMLTDKPISYRYRAKGQMGRGRYAVPPGTVYLLREPLDKTWWEFPENWFPKEGFSLKQVGCGLCLPIEIQGVE
>NC_019729.1|WP_041622339.1|595952_597512_+|CRISPR-associated-protein,-Cmr2-family
MSEYTAISFAPVQGFIEKSRKLRDLFGASLILSYLSYKLVQQAEKSGLNVISPGSPNIQKGMPNRILLKGKGEFSRNDVTNTLQKSWQEILNECRVWIEREVPPKEEYFWQQEWMRWGLYTWEIFWGHGDSIESAMKNLETRKLRRDWTAINWIGDSSSLTGTDAIAWPRLGLEHREPGRQLSHTEKAELKDFYQRLSCVLENLPPDGEPEGKFLAPNERLSIPELVKRLVTRDEDIARNIGISPLEAGFSDIIREPEHWTGWFMGDGDKVGKKLQEIAQKEGDEGLNKFSEAMRAWGENFIKNFPKDQGRIVYAGGDDFLGVIYSSQRENPPEPIEALEWLMGLSDEWKKHGQDINLSVGFVWAGHRVPQRDILQHCREAEKRAKSLGRDRVTIRVVFNSGQYVQWTCPWDYLHILKQYKDRDGKSWYQKPNWSHVYKDLAHLKNRHAISFNPQENSPNDELALAIFQLYFQDEKNLEKNWKHIVGDYPNPEQSKQIIYWISDLINVGWQLCSNISSL
>NC_019729.1|WP_015174441.1|594528_595707_-|WYL-domain-containing-protein
MAKKPTPHPYADKLTFDRIMLLIATLVNHPGIGHSETETSDTKYHDALLEVQSQLQKIAAEFNIEFPENYPATPTIRKDLETLRHYGILDKRMYRFGYYLGTGAMNREELLFAFQAIASQAKYQGNPQARKICEKLTKLLRGLDIELKGQLFYPVREQLNRAIIYTDPVEMLDRQEYRNTLFHKLDIVETAIVRGQAIELYRQDDYYGKGKVGFRRIWPLQLIYHDIAWYMICESCDNGHLSVERVNRFSDCCEIIDVEGRGLAVQEHRLKIAQKLLKNGWGLFLGKPEQQQAELQGQLKLEKVKVRFFEKVVGFILEGDRRHPRQKIKEGPRDSFGKMLYVDYQIDLPDRSLNEFSLWVNRYMDSAQVLSPPSLVEKHRQAARDLADRYSL
>NC_019729.1|WP_015174440.1|589737_594336_+|response-regulator
MQLRKKTLLIIGAALISLIVVLYATASTILLHDFHNLEAQYVRQDVARALDALDDDLSNLDTSAQDYAEWDDTYSFVETRNKNFVKSNFVDSTFIYLRLNLLVLLDSNGKTIFSKGFDLKSQTEIPIPESLKQHLIEALLDSPTVDGDRRAAKTGVLTLPEARLLIASKPIFNSNAQGPSRGTLILGRYLDSSEIGLLSELTHLSVDFRLPSLDFKVGAANYFGHSAKAMARSRQELENVKLKISNLKSAEILVEPLSDTLVAGYALIRDIHGNLALLLRVETDRIIYGQGQATLELFTLSILAVGLIFSAIALLLLERLVLARLASLSTSVSNIAANGDPSLRVHMAGADELASLADGINRMLEALGNSQVERNESEDRYRLMAENSTDMITRHDPKGVFVYVSPASRALLGYEPSELIGRVPKDYFHPDDLETIAKAHWKVLALPVTYTVSYRIRRKDGKYIWFETTGRTIGDPQTGEVQEIIGISRDISVRKQTEQELRESEAAIKALYQVTSAPRTDPLNHLSTFDLRLQELLAMGCRHLGLSVGILSCIQGDNYQIRAVECPDGSIVKDQIYDLEKTFCVATAMAKEPIYFESVRFSGLSFNTDDRAFPIEAYMGIPVTVAGEVYGTLCFFSPTPVTEPFRAVDRELMKLMAQWVGSELERQQTDVDLAKARDQALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQRDFVETIRSSGDALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKKLEVGYLIDRTVPATAIGDSTRLRQILINLLSNAVKFTDAGEVVVSVTAKKISVPAANSKEPPLIAGEPLAINPAYEIQFAVKDTGIGIPSDRMDRLFKSFSQVDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGNLAGKPPADFKSAVLDLGWAESCEIAEKNGYAKSVLSNKPIGQNTKSVGSTFYFSTIVSGCNSSLPVNLSNSQPELAGKRVLIVDDNATNRRILTLQAQSWGMVARASASARLALDWLAAKEMFDLAVLDMQMPEMDGLALAAQIRQYPDCEKLPLVMLTSIGRQEINSPAMEMDFAAFLNKPIKQSQLYNVLINIFGEQTTEFKGQRTSGPFLQTIPVLAENLPLRILLADDHLVNQKVALQILQRMGYRADVAGNGIEVLEALRRQPYDVVLMDVQMPEMDGLETTRRIREQFSADLTLENHTGESEVSATDEQSPNRKSKIENRKSTDEESHNRKSKIENRKSTDEESHNRKSKIENRKSTEESHNRKSKIENRKSTRPWIVAMTANAMQGDREECMAAGMDDYLSKPIAIEQLVRALIACKTRSNSAFDRLQPIVCLDAPAEQIEETSELQVRSNVAVAGNPQLTIPNSPAVVDCAASNLDRALSHSHDSLSPKIIEGLREVEALDEAIEIYLETAPELLRGISMALCNADPLALRRSAHSLKSISGTLGAFRLFELCEELEIMGRMGTNANQPLPDPACALLEQLEAEYQRVEAALKIEMQYSETRTE
>NC_019729.1|WP_041622872.1|585622_588727_+|hypothetical-protein
MYQNLPINPQLYNIGFWLAQVPVEQTTTTNTAEDAALLYSGPQFFIALIAGVVLACAFQLLLTNLSVAAGLSYMGQSRDDRDHHSDSGSSPVRHIGRKVGTWTLITVTVALFFACLLAVKLSLISSPGLGAIVGLVVWATYFSMLVWVSSTTVGSLIGSVVNTATSGFQAIVGTAASALGAKAASNQVVATAKAAAAAVGHELGSAIDPTSLRENVEDYIQSLKPPELDIKGMRSEFEKLLNDPQLKTIAAENLPNLDRQTLVDLVSSRSDLSKRDVNRIVDQLQDAWKQVGKQEQQSDGIAQLVDYLKSAKSGDLVSDKLASRVEKALSNLRGQNSGQSPTMMSQATTMAVNALMGIVLGRTDISDLDVEKVIGQLKEAKDKVGQQADKITAQVKGEPVTYSPIRADVENYLLNTYSWQMNPQAIEREFRDVLYDPTADPGTVRRELEKLKQSNFAEILASRGVFTQDKIKEISQELEAIRQRVLQTAIFAEEQEKSRDLQWRVETYLKLTPKDELTATAIGSDFKKILEDSDASYEQLRDRLSPYTRDSFVQILRGRENFGFQEVEQIVQELERTRDVVLADAKGLQEAAQVRLDNQWQRVQEYLKSTGKEELNPEGIKRDLKTLLDNPEAGMWALRARASRFDRETLVKLLSQRKDLSEDQVNQLLDSAEETWHSAVHAPQKLAQKAKDQYDQTTTALADYLRNTGKSELNPEGIKRDLTKLLENPKEGALALRGRLSQVDRDTLVKLLSQRQDLSEEQVNQIIDQVQETLGSIVKAPRRLAKRVQSQVQDFQSVLEDYLRNTGKDELNPEAIKRDLQLLLHDPKVGAYSLGERLSHIDRATVVSLLSQRPDISEAEANRIVDGILSVRDEFALQIQKIQEGIQSVIDGILGKIRDYLNSLDRPELNYEGITRDVRKLFDDPQAGFDALRDRLGQFNRDTLVALISSREDISEADANRLIDQIERSRNSVLQRAERLQQEAQLRLESIKLQAEKQAEETRKAAEVASWWLFFTALSSAAAAAGAGALAVIR
>NC_019729.1|WP_015174438.1|583221_584313_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MFAVKRALKLNNREATLMAKHAGFRRVVFNMGLSLRTQMYGEGQFTDSKVLNEVKKVLTNYVKKQPEFAWMNQLSSRVYQNAFIDLKDAFRRYRSGKAGHPKFASRRWGQSFTVDSSKGKVLLNAGSTIKIPTLGTFRLYEALECGYVSQTFTISKEGSRWFVSFCVDAERLPVQQSESSVGIDVGINSFATLSTQQVFDAPKPLKQAKTKLATLQRQASKQVRGSQNQRKTYDKIRRLHTRIANIRLDFLHKLTTYLAQTFKLIKIENLNVQGMMANHKLAGAISDLGFYEFKRLLDYKCKMYGANLVLVDQWFPSTKTCSNCGTKKDMPLSIRTFDCPACGISLDRDLNASLNILNWEPSA
>NC_019729.1|WP_015174449.1|605424_606033_-|transposase
MKYDRNKHHRHSIRLPGYDYRTPGAYFLTICSWQRECLFGEVIDNTMQLSPYGKTVLFNWSILPKRYQNVALDNFIVMPNHVHGIIVLKDSPEINYTESDKLALRKSKIHPLSEIVRGMKTSSAGRINQMRYLTGVSVWQRGYYEHIIRNEESLVAIREYIINNPLSWAKDELYPHNSVKINESSPLSIECNGKSYLQSIVL
>NC_019729.1|WP_041622873.1|606350_606953_-|Uma2-family-endonuclease
MQLTEQRYYSIEEYLALEEAADYKSEYIDGEIFPMAGGSTNHNQIALNFSTELNFAFKKLDYRVFMSDVRLWIPKKRIYTYPDVMVVCGKPEYYNNRTDTITNSRVIIEVLSASTKGYDRSKKFEAYRTIPTLEEYLLIDQNRRYIEHFSKTDDKRWSFAEYNESDETIALASVSFEIAVADIYNKVNFEQVDREIAPEK
>NC_019729.1|WP_015174451.1|607244_608906_-|glycosyltransferase-family-39-protein
MSEIFPFLGRQPKNRWNDSLTDKVWMLAFLLAAVLIFGLNLGGAALRDWDEGIAAQVSREIWRGNLNWLYPTIDSMPYFNKPPLVHWLIGLCFAAGGVSELTARLVPAMLTATSVPLLYAIGRELFPRRSIAIFSALVYLTLLPVVRHGRLAMLDGAVLCFLLVAMWCLLRSRRDLRYALGAGIGFGLICLTKGVMLGLLLGAIGCIFLVWDTPRLLTSGYLWGGLAIGTLPVAAWYFAQWLHYGQYFIHANLVNESFRRISEPVSSHRGPPWYYLLEILKLAWPWQLFWLQGLRLSWENRSFPGPKLVLVWTGVYLLAISVMTTKLPWYVLPIYPAFALAVGSYLAEVWEQLWLPPEPIKEEAEERFDAISLLPHPAILAVLGVVGVVGCIYFSGLVQIGKYFVPPDRDLQLMLMFVGLTMTMAAVLLHRKDRQFILVLIWGTYLTLLVLVASDNWVWELAEDYPVKPIAEIVRTGTPAGQQVFTSHRLGRPSLNFYSERQVIVADAPTLKQKWQTLPQPYFLLEKPVLKHLGLQNAEVVKTADDWVLVTKK
>NC_019729.1|WP_015174452.1|608980_610468_+|hypothetical-protein
MNLPVIIDIIIGLVFIYLTLSLLASEIQELIATVLQWRAEHLKKSIEVLISGGSEGAKDPLQFKRVGQLAHSIYANPMIEDLNQGAKGLLSEGFRYVTHRLGDLYHGVTGTKNVFGNKSSGPSYIPAECFSASLLETLKVSSLLSSISKTRLERFQDLQLAQIQQIGQNLSLPDATKPIIEQEFRWLTAEFNRVVEDYQNNLASLNNSLDRMSEKLGFYIKDSQVYLPETELGGREFQRQMAIVKARFDSKIERAALLGQLQPSFSNLLNSVKKSQDPVAEIMDIKEESAIYQQIQETLDSMPESLKRSLYILAQRAEKGGGDTQEQLQRFQKEIEIWFDQSMERASGVYKRNARGVAILLGTAIAVAANADTINIINRLSKDSMLRSTVNLYAEQLVANNAKTKSNNLTSLTKVQQDVDRALDRVALPFGWSEQNSLERDKQGNLLWPALISKLFGWILSGLAISMGAGFWFEALNKIINIRNAGKKPPSSTES
>NC_019729.1|WP_015174453.1|610536_610710_+|hypothetical-protein
MAQDYRGLKHGLTVGFFFESGITDRISDRWVIARLPEVRENTQNINSVRSRMAVQQK
>NC_019729.1|WP_015174454.1|610828_611233_+|hypothetical-protein
MLTSLRETTRAWEYANPQSKSFVVQDSSINEGGYFVSRILAGASDCIEKITSALQKYASILGEIDKVRTTSDNRSNQLQLGFVILSSDYLEPYKSQLPKSHSCLSKNRGLGSCYADRDSDPLSNGGGRDRLFAN
>NC_019729.1|WP_083888225.1|611497_611641_+|RRXRR-domain-containing-protein
MSNFVFLLDIHKRPLNPIRPGLARKLLTTGKAAVFKRYPFTLIARRS
>NC_019729.1|WP_015174455.1|612217_613930_+|group-II-intron-reverse-transcriptase/maturase
MKDRFGNEIGTDALPEKWADLNWKAATKVVRNLRQRIYRATQRNEWNKVRSLTSLMLKSKSNLLLAVRRVTQTNQGKKTAGVDNQLALNPQMRIQLIHEILKLNPWKAKPAKRIYIPKANGKKRPLGIPTLKDRVMQAVVKNALEPSWEARFEANSYGFRPGRSCHDAIEQVHTRLRKGGDEWVLDADIKGAFDHISHEYILNALGEIPSKELIKQWLKAGYVEANKFNPTETGTPQGGIISPLLANIALDGLEGEVLSNHQKVKQSKSGEYKGKTYYTNRYYPRFGYIRYADDFLVTAETKEDLEAVLPEIKEWLKKRGLELNEEKTNIVNKRNGFNFLGFTIRSYSDGTTLCKPQKDKMIAKLREIRGWLKRHKTVKPEEVIKHLNPILRGWANYYRHCSSKEIFATFNHRIVQMLWQWCKRRHHQKHLKRVKNKYFTVLGNDHWTFFADTKDRTGKRKRLYLKDVSDIPILRHTKVEGAASPDDSTKVDYWKKRQSKLGSSVWAKGSKLYKVAQFQHWRCTECGDYLLNGEQIHTHHITEVTKGGTDEIDNLIHLHQICHRKVHGTK
>NC_019729.1|WP_015174456.1|613916_615173_+|HNH-endonuclease
MVLNNLGVQECQSRMMRKCHVRFVGERDTATYALLPDLKVEVTAPQKPITLKLDPGSTTTGIALVQGEEVIFGAQLAHRGQSIKASLESRRSLRRGRRNRHTRYRKARFLNRTRSQGWLAPSLQHRVETILTWVTRLMKVAPISSIAQELVRFDLQQLENPEISGLEYQQGVLCGYEVREYLLNKWERKCAYCGVTDTPLQVEHIHPKAKGGSNRISNLCLACEKCNVKKGTQDIEQFLSKKPDVLKKILSQAKRPLKDAAVVNSTRWALFNRLGMTGLPVSTGSGGLTKFNRTRLQLPKSHWLDAACVGRVEELKVLTSQPLLIKAAGHGTRQMCGTDRFGFPIRHRSKKQIHLGFQTGDIVGATVTAGKKVGSYVGRILCRASGSFDIATMKGRVAGISHKYCKPIHKKDGYSYGF
>NC_019729.1|WP_041622874.1|616018_619690_+|DUF4347-domain-containing-protein
MSSTIAQFNSQSSLEKRPVRSLVFIDAGVKDYESITAGVLPGQQVVILDRTKNGIEQITSEMEKYASTKGAIDSVHIISHGSSGSLQLGNTALGSDNIEQYKSQLDSWQTSLAPEADIMLYGCDVASGTGANFVDRFSQLTGADVAASTNTTGRDGDWNLEFAKGPIETPLALQPEAMASYQGDLATIAVTNNSDSGPGSLRAAIATAVAGDTITFAPGLASQTITLTSGQLDIPVGKNITIDGAAAPGLTISGNNASRAFFVNANVATATTFAVKNLIITNGKTTDRGGAIGTTDEVNLTVDNVQFNNNVADKGGGAIFGNFNNTLTVTNSKFNGNAATAANDERGAGAIGFLSFKTITVTNSEFTNNKGINGGAINSLQGKLTIDNSRFIGNDTTAASYATGQENPGLRGNGGAIYTDRASNPSEASGTIKITNSVFQNNKGQGEGGAAYLFTGSQDNVILEKTTFQNNEVMALTGSPNGGNPGNGGGVTILSDSTNKGLTIANTTFAGNKANNQGGGLWMRNAPTTITNSTFSGNSTAFAVGDFNKLGGAMTLGAPTTILNTTIADNSAGWVGGGIFADANNVTLKNTILSNNTAANGGNPWGIQQHVTAQYSDLGGNFQWPVINTDTKVTTSVTIADPLLGPLQNLNGALVRPLLIGSPAIDKGIATGAPATDQRGVTRPQDGDSIPGAIVDSGSFELGGSVVPVPTPTPAPTPTPAPTPTPTPTPAPTPTPAPTPTPTPTPAPTPTPAPTPTPTPTPAPTPTPAPTPTPTPTPAPTPTPAPTPAPTPTPAPTPTETPTPTPAPTPTPAPTPTETPTPTPAPTPTPAPTPAPTPTPAPTPTPTPEPTPTPTPTPAPTPTPAPTPAPTPTPAPTPTPAPTPAPTPTPAPTPTPAVDDCLLHSLNAPQLDPATITPNPVQQTINGGEDSDFIMGSVINESINGLAGNDTLYGMGGNDNIDGGADNDSLFGNEGSDFISGGAGNDTIYGGKDNDTLVGADGSDFLRGDLGNDTVAGGVGNDSIFGGKDDDILLGEDGDDYILGNLGNDTINAGNGNDIAFGNEGADLIFGLLGNDTLYGGKENDSLDGGEGNDLLLGGNENDVLCGDIGNDTLYAGKGNDILSGGSGADFLSGDVGDDTLTGGSGNDVFFLNQSVGSDIINDFHKGEDLIGLNSGLSFNQLSITSSNNQTLITVTDTNQLLAKLNGITPGILTASDFTQVTI

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Crispr_ID: NC_019729_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_8

648662-650342

Orphan

Consensus_repeat	Method
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	PILER-CR
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CRISPRCasFinder
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CRT

22 spacers

The CRISPR arrays of NC_019729_8

>merge|NC_019729|8|648662-650342|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACACATTGGCAACAATTCTGTACCGAGATTACAGCTTGCCAGTTTCAATCCCCTTGCGGGGAAAAGTTAATTGCGACGCCTTTTCAAATTCGTATTCTTTGTAACCTACAAAGTTTTAATCCCCTTGCGGGGAAAAGTGAATTGCGACAATTAACGCAGTACGTGCAGAAAAAGAATCCCAATGGGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTGCCTTTGAACTAAGCAAAATGTGTAGCATGTCTTTTGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACCATATTTACCAACCAAACGAATACAAGCTCCCTGATTGGGCGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTAAACTCTATAGCATCATTCCCAATTGATGCTACATCTCGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACACACAAATGCAGAATGACAACGTTCGTTTTGCAAGGAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACAAAAGATGGATCAAATCTTTGTCGATCATCAATTACCAGGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTGTTAGCGTCTGCTAAAGACATTAAAGATTTTGTTTTAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACAGGATTGTTTGGCCAAGTCAAAACAATTCCTTGGAGAAGAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTTCGGATCACTAGTCACAGTACCGGTCTCAGCGTTTTTTGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTCGATGGAGTTGCTACAGCTATTGTTTTTAAGATAACGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACATCCGGGTCGTTTGATGATAGCTCTACACAACACTCTGGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTTGAAAAATATCAAAACAGATTGAGCAAAGTTACAACAAACCAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTGGAGGTTTTATCTCTATCCCTTGGGCTATCTTTTTAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACATAAATCATTTATTTGGTTTGGTCTTAGTTTCATATTATGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTCAAGCCTTGAACCTATAAACTTTTTTAATCGGCCAAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACTTTATTAAAAAACTGTTCTGGCTACATCTGTATTTTTGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACCCAAAAAAGCTACTGCTGTTTTCCCAAAAACACACGATCCAAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACGACGTTTGAAGTGGATTGTATACTAGAAGTAACTCAAAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACAATCATTTTTCCAAGGCAAACTTGAAGAGTTTCATGATTTACGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGACAATGGTGATGAAACGAGCACTGTCTCCCCTAAAAAAGTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC

>NC_019729|8|4|648662-650342|PILER-CR
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ACATTGGCAACAATTCTGTACCGAGATTACAGCTTGCCA
GTTTCAATCCCCTTGCGGGGAAAAGTTAATTGCGAC	GCCTTTTCAAATTCGTATTCTTTGTAACCTACAAA
GTTTTAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATTAACGCAGTACGTGCAGAAAAAGAATCCCAATGG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGCCTTTGAACTAAGCAAAATGTGTAGCATGTCTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CATATTTACCAACCAAACGAATACAAGCTCCCTGATTGGGC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TAAACTCTATAGCATCATTCCCAATTGATGCTACATCTC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ACACAAATGCAGAATGACAACGTTCGTTTTGCAAGGA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AAAAGATGGATCAAATCTTTGTCGATCATCAATTACCAG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGTTAGCGTCTGCTAAAGACATTAAAGATTTTGTTTTA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AGGATTGTTTGGCCAAGTCAAAACAATTCCTTGGAGAAGAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTCGGATCACTAGTCACAGTACCGGTCTCAGCGTTTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TCGATGGAGTTGCTACAGCTATTGTTTTTAAGATAAC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ATCCGGGTCGTTTGATGATAGCTCTACACAACACTCTG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTGAAAAATATCAAAACAGATTGAGCAAAGTTACAACAAACCAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGGAGGTTTTATCTCTATCCCTTGGGCTATCTTTTTAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ATAAATCATTTATTTGGTTTGGTCTTAGTTTCATATTAT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TCAAGCCTTGAACCTATAAACTTTTTTAATCGGCCAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTTATTAAAAAACTGTTCTGGCTACATCTGTATTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CCAAAAAAGCTACTGCTGTTTTCCCAAAAACACACGATCCAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	GACGTTTGAAGTGGATTGTATACTAGAAGTAACTCAAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATCATTTTTCCAAGGCAAACTTGAAGAGTTTCATGATTTAC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATGGTGATGAAACGAGCACTGTCTCCCCTAAAAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC

>NC_019729|8|8|648662-650342|CRISPRCasFinder
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ACATTGGCAACAATTCTGTACCGAGATTACAGCTTGCCA
GTTTCAATCCCCTTGCGGGGAAAAGTTAATTGCGAC	GCCTTTTCAAATTCGTATTCTTTGTAACCTACAAA
GTTTTAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATTAACGCAGTACGTGCAGAAAAAGAATCCCAATGG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGCCTTTGAACTAAGCAAAATGTGTAGCATGTCTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CATATTTACCAACCAAACGAATACAAGCTCCCTGATTGGGC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TAAACTCTATAGCATCATTCCCAATTGATGCTACATCTC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ACACAAATGCAGAATGACAACGTTCGTTTTGCAAGGA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AAAAGATGGATCAAATCTTTGTCGATCATCAATTACCAG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGTTAGCGTCTGCTAAAGACATTAAAGATTTTGTTTTA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AGGATTGTTTGGCCAAGTCAAAACAATTCCTTGGAGAAGAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTCGGATCACTAGTCACAGTACCGGTCTCAGCGTTTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TCGATGGAGTTGCTACAGCTATTGTTTTTAAGATAAC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ATCCGGGTCGTTTGATGATAGCTCTACACAACACTCTG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTGAAAAATATCAAAACAGATTGAGCAAAGTTACAACAAACCAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGGAGGTTTTATCTCTATCCCTTGGGCTATCTTTTTAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ATAAATCATTTATTTGGTTTGGTCTTAGTTTCATATTAT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TCAAGCCTTGAACCTATAAACTTTTTTAATCGGCCAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTTATTAAAAAACTGTTCTGGCTACATCTGTATTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CCAAAAAAGCTACTGCTGTTTTCCCAAAAACACACGATCCAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	GACGTTTGAAGTGGATTGTATACTAGAAGTAACTCAAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATCATTTTTCCAAGGCAAACTTGAAGAGTTTCATGATTTAC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATGGTGATGAAACGAGCACTGTCTCCCCTAAAAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC

>NC_019729|8|2|648662-650342|CRT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ACATTGGCAACAATTCTGTACCGAGATTACAGCTTGCCA
GTTTCAATCCCCTTGCGGGGAAAAGTTAATTGCGAC	GCCTTTTCAAATTCGTATTCTTTGTAACCTACAAA
GTTTTAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATTAACGCAGTACGTGCAGAAAAAGAATCCCAATGG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGCCTTTGAACTAAGCAAAATGTGTAGCATGTCTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CATATTTACCAACCAAACGAATACAAGCTCCCTGATTGGGC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TAAACTCTATAGCATCATTCCCAATTGATGCTACATCTC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ACACAAATGCAGAATGACAACGTTCGTTTTGCAAGGA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AAAAGATGGATCAAATCTTTGTCGATCATCAATTACCAG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGTTAGCGTCTGCTAAAGACATTAAAGATTTTGTTTTA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AGGATTGTTTGGCCAAGTCAAAACAATTCCTTGGAGAAGAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTCGGATCACTAGTCACAGTACCGGTCTCAGCGTTTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TCGATGGAGTTGCTACAGCTATTGTTTTTAAGATAAC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ATCCGGGTCGTTTGATGATAGCTCTACACAACACTCTG
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTGAAAAATATCAAAACAGATTGAGCAAAGTTACAACAAACCAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TGGAGGTTTTATCTCTATCCCTTGGGCTATCTTTTTAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	ATAAATCATTTATTTGGTTTGGTCTTAGTTTCATATTAT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TCAAGCCTTGAACCTATAAACTTTTTTAATCGGCCAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	TTTATTAAAAAACTGTTCTGGCTACATCTGTATTTTT
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	CCAAAAAAGCTACTGCTGTTTTCCCAAAAACACACGATCCAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	GACGTTTGAAGTGGATTGTATACTAGAAGTAACTCAAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATCATTTTTCCAAGGCAAACTTGAAGAGTTTCATGATTTAC
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC	AATGGTGATGAAACGAGCACTGTCTCCCCTAAAAAA
GTTTCAATCCCCTTGCGGGGAAAAGTGAATTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174487.1\|651512_651875_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224937
NC_019729.1\|WP_015174481.1\|646849_647323_-\|PAM68-family-protein	unknown	unknown	gnl\|CDD\|371813
NC_019729.1\|WP_015174486.1\|650870_651494_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NC_019729.1\|WP_015174474.1\|639685_640924_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|236462
NC_019729.1\|WP_015174491.1\|656266_656839_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174490.1\|655781_655991_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174484.1\|648183_648552_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198381
NC_019729.1\|WP_015174495.1\|660808_661822_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_150111478.1\|658714_659050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237862
NC_019729.1\|WP_015174493.1\|658004_658565_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174477.1\|642217_643177_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|180963
NC_019729.1\|WP_015174483.1\|647968_648178_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174476.1\|641654_641996_-\|DUF760-domain-containing-protein	unknown	unknown	gnl\|CDD\|368489
NC_019729.1\|WP_015174492.1\|657075_657792_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|368432
NC_019729.1\|WP_015174479.1\|643701_644478_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NC_019729.1\|WP_015174489.1\|652185_654834_-\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_019729.1\|WP_015174482.1\|647418_647688_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_019729.1\|WP_015174480.1\|645434_646496_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237376
NC_019729.1\|WP_015174488.1\|651864_652119_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174475.1\|641068_641473_-\|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl\|CDD\|239517

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174481.1\|646849_647323_-\|PAM68-family-protein	gnl\|CDD\|371813	pfam11947, DUF3464, Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.	1.04677e-81
NC_019729.1\|WP_015174486.1\|650870_651494_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	3.73062e-71
NC_019729.1\|WP_015174493.1\|658004_658565_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.12114e-24
NC_019729.1\|WP_015174484.1\|648183_648552_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198381	cd10434, GIY-YIG_UvrC_Cho, Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins. UvrC is essential for nucleotide excision repair (NER). The N-terminal catalytic GIY-YIG domain of UvrC (also known as Uri domain) is responsible for the 3' incision reaction and the C-terminal half of UvrC, consisting of an UvrB-binding domain (UvrBb), EndoV-like nuclease domain and a helix-hairpin-helix (HhH) DNA-binding domain, contains the residues involved in 5' incision. The N- and C-terminal regions are joined by a common Cys-rich domain containing four conserved Cys residues. Besides UvrC, protein Cho (UvrC homolog) serves as a second endonuclease in E. coli NER. Cho contains GIY-YIG motif followed by a Cys-rich region and shares sequence homology with the N-terminal half of UvrC. It is capable of incising the DNA at the 3' side of a lesion in the presence of the UvrA and UvrB proteins during NER. The C-terminal half of Cho is a unique uncharacterized domain, which is distinct from that of UvrC. Moreover, unlike UvrC, Cho does not require the UvrC-binding domain of UvrB for the 3' incision reaction, which might cause the shift in incision position and the difference in incision efficiencies between Cho and UvrC on different damaged substrates. Due to this, the range of NER in E. coli can be broadened by combining action of Cho and UvrC. This family also includes many uncharacterized epsilon proofreading subunits of DNA polymerase III, which have an additional N-terminal ExoIII domain and a 3'-5' exonuclease domain homolog, fused to an UvrC-like region or a Cho-like region. The UvrC-like region includes a GIY-YIG motif, followed by a Cys-rich region, and an UvrB-binding domain (UvrBb), but lacks the EndoV-like nuclease domain and the helix-hairpin-helix (HhH) DNA-binding domain. The Cho-like region consists of a GIY-YIG motif, followed by the Cys-rich region, and the unique uncharacterized domain presenting in the C-terminal half of Cho. Some family members may not carry the Cys-rich region. This family also includes a specific Cho-like protein from G. violaceus, which possesses only UvrBb domain at the C-terminus, but lacks the additional N-terminal ExoIII domain. The oother two remote homologs of UvrC, Bacillus-I and -II, are included in this family as well. Both of them contain a GIY-YIG domain, but no Cys-rich region. Moreover, the whole C-terminal region of Bacillus-I is replaces by an unknown domain, and Bacillus-II possesses another unknown N-terminal extension.	5.54937e-09
NC_019729.1\|WP_150111478.1\|658714_659050_-\|hypothetical-protein	gnl\|CDD\|237862	PRK14948, PRK14948, DNA polymerase III subunit gamma/tau.	8.59056e-11
NC_019729.1\|WP_015174477.1\|642217_643177_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|180963	PRK07405, PRK07405, RNA polymerase sigma factor SigD; Validated.	0
NC_019729.1\|WP_015174474.1\|639685_640924_+\|histidine-kinase	gnl\|CDD\|236462	PRK09303, PRK09303, histidine kinase.	0
NC_019729.1\|WP_015174476.1\|641654_641996_-\|DUF760-domain-containing-protein	gnl\|CDD\|368489	pfam05542, DUF760, Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.	7.44537e-40
NC_019729.1\|WP_015174492.1\|657075_657792_+\|GUN4-domain-containing-protein	gnl\|CDD\|368432	pfam05419, GUN4, GUN4-like. In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participates in plastid-to-nucleus signaling by regulating magnesium-protoporphyrin IX synthesis or trafficking.	4.5331e-86
NC_019729.1\|WP_015174487.1\|651512_651875_-\|hypothetical-protein	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.05321e-07
NC_019729.1\|WP_015174489.1\|652185_654834_-\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	1.24739e-15
NC_019729.1\|WP_015174479.1\|643701_644478_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	2.8554e-74
NC_019729.1\|WP_015174482.1\|647418_647688_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	8.75666e-47
NC_019729.1\|WP_015174480.1\|645434_646496_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237376	PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	0
NC_019729.1\|WP_015174495.1\|660808_661822_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.25132e-08
NC_019729.1\|WP_015174475.1\|641068_641473_-\|8-oxo-dGTP-diphosphatase-MutT	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.45173e-58

>NC_019729.1|WP_015174484.1|648183_648552_-|GIY-YIG-nuclease-family-protein
MPESIQQEAQAIVDSLAFIPFQDCIALSKEFRELPMSAGIYAVKHRTLGILYIGKTRTLRDRFRSGHKALLWAFIEELKVTDIRIAFYQLDFIQWIQLSSELESLIIQAINPPYNVRIPARD
>NC_019729.1|WP_015174483.1|647968_648178_-|hypothetical-protein
MQTQPAITGHLSPELAQIFLEGLPAHIRTGLSMRAKTMNYPVWAIIEMAISGYLDEEALSFVDCKPKLD
>NC_019729.1|WP_015174482.1|647418_647688_-|30S-ribosomal-protein-S15
MALTQQRKQEIMGDFQTHETDTGSADVQVAMLTDRITKLSAHLKINQKDFASRRGLMMMISRRKRLLAYIQKQNADRYKALIARLGIRG
>NC_019729.1|WP_015174481.1|646849_647323_-|PAM68-family-protein
MSSEPPRKRLPFEPATNRKKTPKKPPEPQASVALESDSADKQPKANKTGKQAQSIPEVVSQRMISRIAVFCGIPTILGISTFFVSYLIVSKGLFDLPNTAVLLVSMGCFGLGVLGLSYGVLSASWDEEVSGSTLGWEEFNTNFGRMREAWRAAKPKS
>NC_019729.1|WP_015174480.1|645434_646496_-|3-deoxy-7-phosphoheptulonate-synthase
MIIVMKAGTPEAEIDRLDEELRTSWGLIPEKIVGRYKTVMGLVGDTVELEPMQLREMSTWIEEVLRVEKPYKRASLEYRQGEASEVAVATPLGTVTIGLHHPIAIVAGPCSVENEEMIVETAMRVKAAGAHFLRGGAYKPRTSPYAFQGHGESALGLLAAAREASGLGIITEVMDAADLSAIVEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGISATIEEWLMAAEYIMASGNPNVILCERGIRGYDRQYTRNTLDLSAVPVLRTLTHLPVMVDPSHGTGWAQFVPSMAFASIASGTDSLMIEVHPNPKKALSDGPQSLTPDQFDQLMEELAVIGKVMKRWPQPVPVLA
>NC_019729.1|WP_015174479.1|643701_644478_-|RNA-methyltransferase
MLTSIQNPLVKEIRKLHSSKGRREQQLFLLEGTHLLEEACAAKYPLATVCCTPEWLEEHGELWEQVANLADRTELVSAKVLESIATTVQPDGIVATAPRTATEPAKFSTLGIALETIQDPGNLGAIVRTAAAANADGLLLSAECADLDHPKVLRASAGAWFKLPMAVSPDLTAEVSGYKNRGMQILATVAGASLSYWEVDLRVPTLIVLGNEGSGLSEELRSLADRQIQIPLSRGVESLNVSIAGALILYEAQRQRSH
>NC_019729.1|WP_015174477.1|642217_643177_-|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MKTLKSSDTDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTPKQIREYLDRARLPLSLDLRVGDNQDTELGDLLEDTGTTPEDFALQSSLRTDLDQLMAELTQQQREVLALRFGLEDGQTLTLAKIGDRLNISRERVRQIEREALTKLRKRKQDINDYLAS
>NC_019729.1|WP_015174476.1|641654_641996_-|DUF760-domain-containing-protein
MSNSSNKSPEFFEEDGENTNLLWQYVQSMAPDTVSQLSKPTSHEVFQVMERNIVGLLGNLPSEHFGVTVTTSREHLGRLLASAMISGYFLKNAEQRMTFEKSIQASERHGSDD
>NC_019729.1|WP_015174475.1|641068_641473_-|8-oxo-dGTP-diphosphatase-MutT
MSVSPVAHKVIGVAAIWNDRQQILIDKRRQHGLHGGFWEFPGGKIEPGETIEACIKREIMEELGIVVEVGDRLITIDHDYTKFTVRLYVHHCRHVSGEPQTIECDEIRWVTLDEIDQFTFPKANAQIIDALRKS
>NC_019729.1|WP_015174474.1|639685_640924_+|histidine-kinase
MLNYFHPIEKLNSVHPALGTSATDCSPEQPANSAPLLQLLLFVDKRPSSREQTRHIRKSLKDLKADYDFELQIIDVGEQPDLAEHFKLVATPSLLKIHPEPRQTLAGSNLIAQLEHWWPRWKRSVEEYAAQQQSAAALAETLTESKPIYSVACAAELVQLSDEVFRLKQEKEHLQEQLQLKDRIIAMLAHDLRNPLTAASLALETLESSQKVKEGEKSRLTASLAAHLMKQARRQIRIVDRMITDILQAARGTNAQLHIEPKRIELGAICQDVILQFQDKFQAKSLNLETDIPADLPLVYADPDRIKQVIVNLLDNASKYTPDRGTVNLSILHRTAYKVQVSICNSGPGIPEEDCASIFEDSFRLQRDKSTDGYGIGLSLCQGIIRAHYGQIWVDSVPDRGSCFHFTLPVQK
>NC_019729.1|WP_015174486.1|650870_651494_-|Holliday-junction-branch-migration-protein-RuvA
MISYLKGTVADIAKGSNRVILTLEVNQIGYEIQILPRVTGQLPASGEVAQIFTHQQVKEDQIVLYGFGSAAERDLFRQLTSVSGVGAQLAIALLDTLGLQDLVQAIVGGNTRILAKTPGVGTKTAERLALELKSKLSEWRQQAGLTTSVAAGVPPAIQEEVEMILLAMGYTAAEVLQALQTLSQDSTLSAKGNADDWIREAIAYLSR
>NC_019729.1|WP_015174487.1|651512_651875_-|hypothetical-protein
MLNESELVQIDLTPQYKRNLRELSKRFRQIRLDTGLVIEQLQAGNFIGDRIPGMGEDYIILKVRVKNSNIQKGKSAGYRMIYQVESPVSVLLLTIYSKSDRTDISLNEIRSIIAEFDENE
>NC_019729.1|WP_015174488.1|651864_652119_-|hypothetical-protein
MKAFEVTGTIDEKGQLILDRPLTLDTPGPVRIIVLLPEPTDEGEDDPDDTPVAEIKASLKRALQEAKTGQRIPLSQMWEGIDVE
>NC_019729.1|WP_015174489.1|652185_654834_-|AAA-like-domain-containing-protein
MNSQMTAEVNSTYQYQVGGYLPAGAPTYVRRSADSELYEGLKAGDFCYVLSAPQMGKSSLLVQTAKRLQAQGTVFAAINLRSISSPDISPQKWYAAIMYRMASSLHITNRFDAIKWWNDRELLSPVQRLEIFIEKVLLKSLQQNLVIFLDDIDSISSLNFSTSDFFALIRACYSKRAEQPEYDRLTFAVMGVAAPSESIRDPRCNPFNIGRQIHLSRFQLHESLPLAKGLALKAFRPQKVLQEILAWTGGQPFLTQKVCQLVLEYGPFIGRNSEAPQVKKLVKHRILKNWEEEDEPQHLTAIRDRIFHSHCDLTRLLTLYQQILQPPQPTKPGESQGVPADCSPEKIELQLSGLVVKSQGKLIVANLIYQSVFNRFWVEKELGKLAPYRSSLAAWLASDREDDSLLLTGESLQSALDWAADKQLSQEHYWFLNPDRTFGEKPTVIVAEVADSSADTDADTSILTPPSETVPTGSNEQRLYDHIVSCVETESPAQVIERFRKLFIDGMGYPDREIEATLYSIVSVKRANYDFKYILHRCCYIPINRWQLHSQNHLAIAKLVALFKQTSPRFGMEFYIVKRLQEQINLFTKSEEFQTLERLVKALDREAEKQQQDTDSPLGELICRYPYLYGYSLLSKGSIEEDQQTIKQLAFQRQRQFETHLSQYLNYMVEPRNTEIGIVQRAANPTLLNDAELHLAVREFAGKVAGDRSYKEAAQFFLRDSRKTPSYGSFKVNLYEYLISSVEPEYGGRQFNDRLYKQIKNTLRENDSLKFNNPLLVRTCHQLFNFLVVENSQHPSHYVFYDLVYNLGASRTMGLLLKLVLLSGKVKPELEKRFSILFNHYEGKASNEIMWFVKSLENFNVALVVNFGKTDLSLVKQQLILA
>NC_019729.1|WP_015174490.1|655781_655991_+|hypothetical-protein
MKNSILVLGVIASAGFGFFQAGSASASAIATQPSSASSLTAWESRPDFNYTGTDEDGDQEEVRTGKGRK
>NC_019729.1|WP_015174491.1|656266_656839_+|hypothetical-protein
MENTLETTRRQRVLTRTQERRQATPKEKQLIHLLANMACSLIKYDYKHAAGKGTLPPSERKRLAEWHYLRVQQIRRIERSLEPVATLKRVYYKSILSPRDLKSLKLLWLEEDKNRVKRVDPDLDDILSEALDRGDTLKQLFHSIEVKERTFSETPRPGAVPLWVKEWEESEYDINFFPPSFSAWVSIVDD
>NC_019729.1|WP_015174492.1|657075_657792_+|GUN4-domain-containing-protein
MTDSISTSPLDSAADTAELRSQLRSGSEKTQLQLLQQQIADSGWDVLMEFLLERKSEAPTAVMGKAYQILYSANSPRAAEFLQANFPTGVVPLRSDSSIDYTPLQQLLALQEFQEADRLTLDKLCELAGDTASVRKWLYFTQVESLPVADLQTINTLWKVHSEGKFGFSVQREIWLSSGKNWDKLWPLIGWKKGNNWTRYPQEFIWDLSAPRGHLPLSNQLRGVQPFAALMAHPAWLK
>NC_019729.1|WP_015174493.1|658004_658565_+|Uma2-family-endonuclease
MVGIGTKLTLAEFLALPHGDIYCEFVDGEAVPKVSPKFFHSSLQGALCRLIRVWCKGRGRVLPEWAILLKRQDKDWVPVPDLTYISYERLPKSWRRNEACPAIPELAIEIISPDQSMKEFEEKAKDYLVAGVTRVWVIDPEAILIKSFLPDGSSQVYTDNTPIVDELLPGLELTTRQIFEEAELID
>NC_019729.1|WP_150111478.1|658714_659050_-|hypothetical-protein
MTSLNNRQSPNFPIQLELPLTPQKIDPLSQMEEAIQSMLGLTWKTVLLHISARSTKELMRQHGKLIAFNDREARIKVSSTPLLLMAIQKLPDVESAFRKAFGKTVKIRLEV
>NC_019729.1|WP_015174495.1|660808_661822_+|tetratricopeptide-repeat-protein
MQNNPLPSGELILESLGIHPHNLPAQFPTREQRLQYRAVVQWLTDYKPKSDASNLEKVRGYLEAFHHLCELKNWERASKIIEINLDIPNNTELHNPLITWGYYREVIDLYSRLLGNLDPASEAVCFFGLGQVYHYLGNYDQAISYYKESLSRMLKIGYSLGVGKVIGSMGNSYLAIKEYELAISCYEECWVISKETNNQENMGVTLGNIGTIYFALEIYHTAIDYAEQHFTIAEKIGDLVGIGIALTNWGNALFKLGHHLEAEKKFLRASEIFKQNSDRRSEALIFYNWASFQADLGNIPLAIEYCDRALSIATELGIPLAKECQERKEQLLSKHNL

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Crispr_ID: NC_019729_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_9

685940-686041

TypeV-U4

Consensus_repeat	Method
AGGGTGTTTTCTAGGTGGATAAATGTGTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_9

>merge|NC_019729|9|685940-686041|CRISPRCasFinder
AGGGTGTTTTCTAGGTGGATAAATGTGTTTAAGTTTTTTATGAACACGCTTTCCGGCCTGTTCCACAAAGAGGGTGTTTTCTAGGTGGATAAATGTGATTTA

>NC_019729|9|9|685940-686041|CRISPRCasFinder
AGGGTGTTTTCTAGGTGGATAAATGTGTTTAA	GTTTTTTATGAACACGCTTTCCGGCCTGTTCCACAAAG
AGGGTGTTTTCTAGGTGGATAAATGTGATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174519.1\|684370_685084_-\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176524
NC_019729.1\|WP_015174524.1\|690042_692094_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213221
NC_019729.1\|WP_015174513.1\|678707_679229_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_019729.1\|WP_041622880.1\|685080_685938_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_019729.1\|WP_015174523.1\|689078_689603_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_019729.1\|WP_015174522.1\|687483_688818_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015174517.1\|682692_683160_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350222
NC_019729.1\|WP_015174526.1\|692579_693797_-\|DNA-double-strand-break-repair-nuclease-NurA	unknown	unknown	gnl\|CDD\|214920
NC_019729.1\|WP_015174511.1\|676642_677068_+\|ferredoxin	unknown	unknown	gnl\|CDD\|225945
NC_019729.1\|WP_015174530.1\|697056_698844_+\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_019729.1\|WP_015174521.1\|686178_687462_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NC_019729.1\|WP_015174529.1\|695980_696721_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NC_019729.1\|WP_015174528.1\|695104_695839_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NC_019729.1\|WP_015174518.1\|683249_684296_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NC_019729.1\|WP_015174515.1\|681350_682151_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_015174514.1\|679565_681206_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NC_019729.1\|WP_015174512.1\|677719_678370_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019729.1\|WP_015174516.1\|682402_682699_+\|antitoxin-family-protein	unknown	unknown	gnl\|CDD\|376681
NC_019729.1\|WP_015174525.1\|692216_692435_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174527.1\|694207_695002_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|223620

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174519.1\|684370_685084_-\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176524	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	9.84441e-59
NC_019729.1\|WP_015174524.1\|690042_692094_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213221	cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C. Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	8.32626e-110
NC_019729.1\|WP_015174513.1\|678707_679229_+\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.52675e-58
NC_019729.1\|WP_041622880.1\|685080_685938_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.10604e-27
NC_019729.1\|WP_015174523.1\|689078_689603_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.58881e-41
NC_019729.1\|WP_015174522.1\|687483_688818_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.12721e-06
NC_019729.1\|WP_015174517.1\|682692_683160_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.37866e-45
NC_019729.1\|WP_015174526.1\|692579_693797_-\|DNA-double-strand-break-repair-nuclease-NurA	gnl\|CDD\|214920	smart00933, NurA, NurA nuclease. This family includes NurA a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius.	1.15931e-54
NC_019729.1\|WP_015174511.1\|676642_677068_+\|ferredoxin	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	3.43427e-22
NC_019729.1\|WP_015174521.1\|686178_687462_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	6.33764e-90
NC_019729.1\|WP_015174529.1\|695980_696721_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	1.33235e-79
NC_019729.1\|WP_015174528.1\|695104_695839_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	1.6002e-73
NC_019729.1\|WP_015174518.1\|683249_684296_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	3.40416e-124
NC_019729.1\|WP_015174515.1\|681350_682151_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.47855e-34
NC_019729.1\|WP_015174514.1\|679565_681206_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NC_019729.1\|WP_015174512.1\|677719_678370_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.05426e-51
NC_019729.1\|WP_015174516.1\|682402_682699_+\|antitoxin-family-protein	gnl\|CDD\|376681	pfam01954, DUF104, Protein of unknown function DUF104. This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.	1.77293e-07
NC_019729.1\|WP_015174530.1\|697056_698844_+\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	4.44077e-131
NC_019729.1\|WP_015174527.1\|694207_695002_-\|HAD-hydrolase-like-protein	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	1.54369e-05

>NC_019729.1|WP_041622880.1|685080_685938_-|alpha/beta-hydrolase
MMPTRKTLQLPDIELSYLEWQPETGKEKVPRLLLLHGLADSACVWTSFGNYLSNRYHIVAPDMRGHGESSKPKTGYTFKSAIADLEALMAHLNWPDAHILGHSWTGKLAPIWARQNPDRFCSMILVDPIFITKLPAALKLTLPIVYRRLDCLKCVGPFATLSQAEAAAKQSGEYADWSDVQQMVFQRQIEQKSDGSWGSKFAIAARNQIFAEVMKVAGLTENIEIQTLFVQPEKGVNRMDWQMQPYKRYLKNLTVAKVPGNHWCFLTQPETFNQTVADFLEGTRQ
>NC_019729.1|WP_015174519.1|684370_685084_-|glycerophosphoryl-diester-phosphodiesterase
MNVEIIAHRGFSAIAPENTLAAFELAIARGAHSIEFDIQLSADNVPVIFHDATLDRITGVSGKVRETTLSELQTLNAGKWFSDEFSQQKIPTLKESLAILKNVGKFLYFDVKPHCEWSDADVADFVNTLKGEKIQHKCVITSFNDGFLEQVRRLSGDLAIGHIVANLEAYKTQFAQAVAHGDNLISSQYRVLLENPALIQESRSQGVDIVAWTVDDRADMQKLLDLGIRRIVTNCLI
>NC_019729.1|WP_015174518.1|683249_684296_-|histidinol-phosphate-transaminase
MNYFRKTIHQMSGYVPGEQPPLGTKIIKLNSNENPYPPSPTALKVLQEIDGEMLRRYPDPTGKSFRIAASKVLGVPDDWIVVGNGSDDLLNLIVRAVGEAGKPVVCPAPTYVLYRTLAEIQEADFVEVPYPDDYKLPVDLLIAAQGAVTFVASPNSPSGTAISVADLEKLAKELSGILVIDEAYVDFAENNALELTTKYSNVIVLRTLSKGYSLAGLRLGFGIANPALLAELNKIKDSYNVDALAYAVGAAAIADRDHKTANAEKIKASRAKLAVSFQELGFEVWPSQTNFLLVRPPNGDAERIYQTLKVRGILIRYFNQPRLEDKLRISVGTEEQNQILVKTLKEIL
>NC_019729.1|WP_015174517.1|682692_683160_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MVNIYFLDSSALIKRYVVEIGSPWIKTLTDSQTGNSLLVVRITWVEVLSAFARRQREGGITAAEVAALIAKFRSEFNSRYRVIEVDLALVERAGELIVQYPLRAYDAVQLAAALRVQSVLTSIPETQLIFVSADNRLLDIAQSAGLRIDNPNNYP
>NC_019729.1|WP_015174516.1|682402_682699_+|antitoxin-family-protein
MPETIIAVYENGVFRPLSPLSLNDGETVQIQLWPDDPKKQAELAIQFLVDRGLVTPLPNESHNVEAVTDEEVYELAKRLGAKPGKPLSEMIIEDRGPW
>NC_019729.1|WP_015174515.1|681350_682151_+|methyltransferase-domain-containing-protein
MQEETLKKERQFHDAWASTIDIDGIRVNDYFEACTAPENRFIVHKMGDITGKRLLDLGCGAGENSVYFAKKGANCVAADYSQGMVEVALKLAEKNGVKIDGCTVNAMAMDFPDNSFDIVYASNLLHHLPEPSKAIREMHRVLKPGGKACFWDPMKHNPVINVYRRMATEVRTEDEAPLDINIVNFVKSLFSETAYDTFWLTALWIFLRFYLIEKVHPNEERYWKKIIIEQERLKPEYSRLEELDGFLKKLPLMKRLAWNLAVVATK
>NC_019729.1|WP_015174514.1|679565_681206_+|2-isopropylmalate-synthase
MKTQPSQDRIIIFDTTLRDGEQSPGASLNVDEKLTIARQLARLGVDVIEAGFPFTSTGDFEAVQKIARSVGTEDGPTICGLARARKQDIKTAAEALKPAANARIHTFLATSDIHLEYKLKKTRAEVLEIVPEMVAYAKSFVDDVEFSPEDACRSEPEFLYQVLERAIAAGATTVNIPDTVGYTTPSEFGALIRGIKENVPNIDRAIISVHGHNDLGLAVANFLEAVKNGARQLECTINGIGERAGNAALEELVMALYVRRQYYNPFLGRAADSEEPLTKIDSRQIYKTSRLVSNLTGMLVQPNKAIVGANAFAHESGIHQDGVLKNKRTYEIMDAESIGLTENQIVLGKLSGRHAFHTRLKELGFEMADDELNKAFVKFKDLADKKKEITDWDLEAIANNEVHQAPELFRLELVQVSCGDKSRPTATVTVRNPAGEELTDAAIGTGPVDAIYRAINRVVNVPNELIEFSVQSVTAGIDAIGEVTIRLRHEGKVFSGHSANTDIIVASAEAYISALNRLYQALQHSAEKSSEQPTAIGNQVVAKAQR
>NC_019729.1|WP_015174513.1|678707_679229_+|NYN-domain-containing-protein
MTNLMNRLSIFVDGNNMFYAQQKNGWFFDPRRVLEYFKTSQPNVMLINAFWYTGLKDPQDQRGFRDALISLGYTVRTKILKEYYDDASGRYSQKANLDIEIVVDMFNTVDQYDQVVLFSGDGDFERAIELLRSKNTHITVVSTEGMIARELRNATDRYIDLNEIREHIEKMDY
>NC_019729.1|WP_015174512.1|677719_678370_+|response-regulator-transcription-factor
MTKDNNSGEQKRLMLVDDDPNLILLVKDYLEFRGYNVITAENGRDALEKLEQEVPDLMICDVMMPEMDGYTLVKHIREDPRTSWIPVLFLSAKGQSSDRVKGLSTGADVYIVKPFEPEELVAQVESSLKAASRLIRHSNPGMESGPKIKARRNVELTPTELKVVQLLAQGMANRQIADVMNVSQRTIESHVSNMLGKTGLHNRTELARWALESKKA
>NC_019729.1|WP_015174511.1|676642_677068_+|ferredoxin
MLEPNDESCSQGLSACVQSLGIAQIERHIFICADQTVPKCCSRQTSLEAWNYLKKRLQELGLDKPSATRPTCVFRTKANCLRVCASGPIMVVYPDGVWYRDVTPAVIERIIQEHLLNSKVVQEYAFLTHPLPVPAQAQPDI
>NC_019729.1|WP_015174521.1|686178_687462_-|esterase-like-activity-of-phytase-family-protein
MLQRWHKSKQFNKSSKINVTALSNSWHLKTLGDPLRGLRQRILRLFSLALILLTVCTACAPPPAVARDRSFPEMSLEFLGEYQLPKMNFEGVPVGGLSGITYDPKGISAATSKAYRFYALSDDPSENGEARFYSLRLDLTSSDPANIRLKKVTVEGVTSLKQADGETFSWGSINPEGIALSPRNSVFVASEGVTHVGIPPFIGEFDLKTGQMRGNLPIPKRYIPDTSDEKQQQGVVDNLGFESLTIDPETFSPGGLDPFRLFAATEAPLMQDLDPEQASKLRVLHYIIVDKKPQLVSENLYKLDQVPLTILNGLTELVTVGGGQILSLERSFGLSGYSARIYQVAFGAATDTSRIQSFKGQLPTVEPVKKKLLLDLSELGIPLYNLEGMTLGPRLPDGSQSLVLVSDDNFDEAQKTQFILLSLKGKG
>NC_019729.1|WP_015174522.1|687483_688818_+|tetratricopeptide-repeat-protein
MQNLMFREGMPNRGNQILRMRSSVPIGCLLFLWLCAGSIASAQTNPPGLDQFSPNPLEITTPDPLAPANESLSSTQRDELTAALEELNLEALAKLEAGDGAGAFEIWFRELRLRRYLGPAAEIAALSRVGSVAWSNGKNLELQLITKRLQAIQKQVKSQVPLNTELLPAFAAAFQQVRAKGPTVEVYQEILENARQNQDILAQGQILKAIGLIHINWLSYDKAAPVYEELATLIQENRALFAANSAVQNSAVVAGNGAPPQPVTPPTEVETLRQLAYVYQQSKQPLKAIAAREKLASVYLNLQNPSAIPPLKIAIASDYQTIGQINLAAQYYQEAYNLAVPIQQYAQASEALDKLALLYRAQKQWEPTLRIYQMQLLLEERAYNFYGLMSAYDNLGQVYQEMKAYDKALESYQKGLDVAKKLGHRQEYFAKKIQKVNKQLQRTS
>NC_019729.1|WP_015174523.1|689078_689603_-|GNAT-family-N-acetyltransferase
MHEIETARLYLRQFTPDDLDDLYRIYSDPEIMKYLTGVRTREATEIAIHNMLQRWEQNNFGMWALVHKRDRKMIGRCGLACLDQTPEVELGYAIDKVYWNQGLVTEASFASLNYGFEILQLERIVAIARPENIASQRVIQKVGMKYEKNARYYETDVLYYSISRETYESFDFRF
>NC_019729.1|WP_015174524.1|690042_692094_+|ABC-transporter-ATP-binding-protein
MTTSSPVADTKNKSGQETDWRLFLRLASYATRSKRLLIISIALLVPLAVSGAIQPILIGQAISVIRSEPTYEFLRGLPLSAALNILAILLMLTITLRLALQSVQGYLVTKVGQIITTDIRNDLFAHVTSLAVRFFDRTPVGKLMTRLTSDVEALGEVFSSGAIGIVSDLFSILVIAIFMFTMQWQLALMLVLMMIPITAVIVYFQNQYRIANYTTREELSDLNSQLQENLTGIGVVQLFRRERFNSELFRVTNKRYIKAVDTTIFYDSAVSATLEWIALVAIAGVLWMGGQRVLAGNLNFGTLSAFILFAQRLFDPLRQFAEKFTAIQAGFTAVERISDILNEPIEIKDPTSGKKEEGRGKKEEGRGKREEGRRAGYSPLLITGHPEATAYNLSPFDRELADNHQNPASSEYRLLPNNPQSPPANPTLLRGGENAKSQNSESGEIQFDNVWFAYKQDEYVLQNLNFTIKSGEKVALVGPTGAGKSSIIRLLCRLYEPSRGRILVNHVDIRDLPQAELRRHIGVIIQDGFLFAGDVKSNISLGESYSIEEIQAAAEKTNVARLIEQLPQGYDTQLRERGTNLSGGQKQLLAFARAAIRNPSILVLDEATASLDVGTEALIQEALERLMADRTAIIIAHRLSTIRNVDRILVLKRGQLVESGSHEELLQQEGLYASLYKLQMLGS
>NC_019729.1|WP_015174525.1|692216_692435_-|hypothetical-protein
MPIELIILIAALLVSWLVFNWAFKVLKASIGTAIGLAAIVLTMQLLFGIGPNQLFQHIIHLPDTLGKMISGK
>NC_019729.1|WP_015174526.1|692579_693797_-|DNA-double-strand-break-repair-nuclease-NurA
MLDLTKAAKAMQGMSQHLNVEAHAARQRLEVAQNLLVKAAAEQEKLVELQENWRDRTLFNAATPIEPLSDRTYITAPPAAHTVFATDGSQISPNHHEIAYCYLLNVGTVMLHYGQSRHPVLDSVPEVFYKPEDLYGSRQWGIRTEEWMGYRRAVSEAIALAEMGCNWAKVNDNKLPAPALAMVDGSLIYWFLEQLPTEARDRILLPILEAWDKLRLAGIPLLGYLSASRSSESLSFLRFEACTHEVPDCMTNCPNVGFSATISFDEKAPCQEFEPLRDAILWATILSPGQRSPLWKSRARILDLYGLNSVYFCYVHVGTEIARIEVPEWVAQDTAQLDLALGMMLAQVHKGGGYPVTLAEAHNQAVVTGGDRSRFFALLEQQMIKAGLKNVGISYKETRKRGSIA
>NC_019729.1|WP_015174527.1|694207_695002_-|HAD-hydrolase-like-protein
MANNFPTILALDFDGVICDGLIEYFQTAWRTYCQIWKPVETVPDPDLALSFYRVRPAIETGWEMPLLIRALLTGISPEQILLDWPNIVPYLLTENNLKAQSVGAMLDGLRDNWIAEDLSGWLSLHRFYPGVADRLHSLQESSVKVAIVTTKEGRFVRELLQLAGVEMPSELIFGKEYNKPKHQILREFLAASGKDSTIWFVEDRLKTLLSVKQQPDLSQVRLFLADWGYNTLAERESVAQNPPVQLLSLSQFAGDFADWLPIDC
>NC_019729.1|WP_015174528.1|695104_695839_-|DUF928-domain-containing-protein
MKRFIHFTALAMTVLAIALTLPSLLTPMQAVPAPILLSQNVNFKPPDVTAPDNRQGGTHRGCKLRDGLFITPLIPESNIGLTVTESPTFFVYVSQPAAQVEFILLNADESEVVYETTLKNDKAGIVGVSLSEKRKTQNIQVGKRYVWSFALACDPLERSGDYIVKGWMQRIEPQANLKQDLANPDPMAKVIAYAKNGIWYETLATLAEMRRLAPDDSRLTTEWTQLLQSQGLESIADQPLVQSF
>NC_019729.1|WP_015174529.1|695980_696721_-|DUF928-domain-containing-protein
MKRFLHGATLAVAVSAIAATVPSSLAPMRAQSQPLLLSQNLNFKPPDVTAPANRQGGTHRGNKLCPAGLSITPLVPPTNIGLTLTESPTIFVYVPQTSAKIEFTVLNDKEEEVVYEKTFKLDKSGIVGVTIPATVDNNKSLEVGKRYVWSFSLVCDPEDRAADLVVKGFVQRIEPQATLKSDLANPDPMTRLNVYAQNGIWYETLATLAQMRRQTPGDVKLTAKWTQLLQSQGLESVAAQPLVAPL
>NC_019729.1|WP_015174530.1|697056_698844_+|CHASE2-domain-containing-protein
MSKISNKIRSAAAQLSQMYKPSRALAQSVLIASAAVTLSLMGARQLGILEPVELSAYDQMVRWRPEEQPDSRLLLVGITEADIQKLKQWPISDRKIAEILQKLDQMQPAVIGLDVLRDVPLGDGRQELTKVLQKNDRIIGVCLVTDGSPDNPGSPPPPGMPTNRVGFADFGVDPGGILRRALLFMKPPTIEGNSSVQKHLCNDSSQVLFSFNLQLALRYLQGQKISPKLAPDQSLWLGKTQLKQLASNDGGYRNADARGYQILINYRSRLQVANQVRITDVLEGKVDPNLVKDKIVLIGYTTETVKDLFYTPYSGRQQKNQFMPGIVAHAQVVSQILSAVLDNRPMFWFWPEWAEILWISGWSIVGGTLASRMAHPAKLTVTFAALLSGCCAIGFGIFLLGGWVPVAAPALALILTGGSIVSAERFNKAGYGKAISDRVKQVFKIEIDQAKKEQQVAEITESAFFKELQQKKDKLRISKQETSEKAPSEPQEITASTPELPKVESQTDEYLAQLQEKAKQQKQRAAATESESGSKTVASDAGSGASSAETKHDDEFSDLQTKAKQMRQRRGAQKIIKDEKSDSLTDKEDLGGKEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_019729_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_10

874065-874136

Unclear

Consensus_repeat	Method
ATCTAAAATCTCAAATCTAAAATC	CRISPRCasFinder

1 spacers

Cas14u_CAS-V

The CRISPR arrays of NC_019729_10

>merge|NC_019729|10|874065-874136|CRISPRCasFinder
ATCTAAAATCTCAAATCTAAAATCGCGCAATCGATTGACTGTGGGCTGGTGTCAGATTTCCCATCTAAAATC

>NC_019729|10|10|874065-874136|CRISPRCasFinder
ATCTAAAATCTCAAATCTAAAATC	GCGCAATCGATTGACTGTGGGCTG
GTGTCAGATTTCCCATCTAAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174677.1\|877188_877743_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174680.1\|878877_879594_-\|TIGR04283-family-arsenosugar-biosynthesis-glycosyltransferase	unknown	unknown	gnl\|CDD\|275103
NC_019729.1\|WP_015174665.1\|865857_866751_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174668.1\|867835_868060_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174679.1\|878254_878764_-\|photosystem-I-reaction-center-protein-subunit-XI	unknown	unknown	gnl\|CDD\|367128
NC_019729.1\|WP_015174666.1\|866935_867517_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381113
NC_019729.1\|WP_015174669.1\|868294_868762_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622355.1\|864691_865600_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_019729.1\|WP_015174682.1\|880797_881766_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_019729.1\|WP_015174667.1\|867554_867836_-\|addiction-module-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|225583
NC_019729.1\|WP_015174678.1\|878080_878197_-\|photosystem-I-reaction-center-subunit-VIII	unknown	unknown	gnl\|CDD\|183355
NC_019729.1\|WP_015174676.1\|876162_877050_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174672.1\|871571_872897_-\|transposase	Cas14u_CAS-V	-	gnl\|CDD\|223747
NC_019729.1\|WP_190274324.1\|876016_876166_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174681.1\|880013_880631_-\|TIGR04282-family-arsenosugar-biosynthesis-glycosyltransferase	unknown	unknown	gnl\|CDD\|275102
NC_019729.1\|WP_015174673.1\|873188_873914_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_019729.1\|WP_015174671.1\|870919_871234_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174670.1\|869062_870790_-\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|180319
NC_019729.1\|WP_015174674.1\|874171_874993_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_019729.1\|WP_015174675.1\|875258_875975_-\|DUF2996-domain-containing-protein	unknown	unknown	gnl\|CDD\|371420

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174680.1\|878877_879594_-\|TIGR04283-family-arsenosugar-biosynthesis-glycosyltransferase	gnl\|CDD\|275103	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated. This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine. [Unknown function, Enzymes of unknown specificity].	1.93203e-117
NC_019729.1\|WP_015174665.1\|865857_866751_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	7.64459e-12
NC_019729.1\|WP_015174679.1\|878254_878764_-\|photosystem-I-reaction-center-protein-subunit-XI	gnl\|CDD\|367128	pfam02605, PsaL, Photosystem I reaction centre subunit XI. This family consists of the photosystem I reaction centre subunit XI, PsaL, from plants and bacteria. PsaL is one of the smaller subunits in photosystem I with only two transmembrane alpha helices and interacts closely with PsaI.	1.04338e-73
NC_019729.1\|WP_015174666.1\|866935_867517_+\|response-regulator-transcription-factor	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.18821e-24
NC_019729.1\|WP_041622355.1\|864691_865600_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.33986e-11
NC_019729.1\|WP_015174682.1\|880797_881766_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NC_019729.1\|WP_015174667.1\|867554_867836_-\|addiction-module-toxin,-RelE/StbE-family	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	1.27907e-12
NC_019729.1\|WP_015174672.1\|871571_872897_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.26661e-22
NC_019729.1\|WP_015174675.1\|875258_875975_-\|DUF2996-domain-containing-protein	gnl\|CDD\|371420	pfam11210, DUF2996, Protein of unknown function (DUF2996). This family of proteins has no known function.	3.31991e-79
NC_019729.1\|WP_015174681.1\|880013_880631_-\|TIGR04282-family-arsenosugar-biosynthesis-glycosyltransferase	gnl\|CDD\|275102	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated. Members of this protein family show strongly correlated phylogenetic distribution, and in most cases co-clustering, with an unusual radical SAM enzyme (TIGR04167) whose C-terminal pfam12345 domain often contains a selenocysteine residue. Other members of the conserved gene neighborhood include another putative glycosyltransferase, an alkylhydroperoxidase family protein (TIGR04169), and a phosphoesterase family protein (TIGR04168). The cassette is likely to be biosynthetic but its exact function is unknown. [Unknown function, Enzymes of unknown specificity].	1.21306e-90
NC_019729.1\|WP_015174673.1\|873188_873914_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.80039e-28
NC_019729.1\|WP_015174670.1\|869062_870790_-\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
NC_019729.1\|WP_015174674.1\|874171_874993_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.27542e-13
NC_019729.1\|WP_015174678.1\|878080_878197_-\|photosystem-I-reaction-center-subunit-VIII	gnl\|CDD\|183355	PRK11877, psaI, photosystem I reaction center subunit VIII; Reviewed.	2.39091e-11

>NC_019729.1|WP_015174673.1|873188_873914_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSSESKLLISRCFLAGLGTQMFMYREDRIPQESPVLVVSNHRSFLDPVLLTAALGRSIRFACHHYMGQVPLMREVVTTFGAFPLEAPDHRQQHFFSQATALLQSGEMVGVFPEGAEPMVKLTGPNTVGKFQRGFAHLALRAPVRDLAVLPVAISSFEEQSIRSAVPLKLLSLFDPSEPLFDRSGWHPVIIYQRVNVLIGRPYWITVERQQQYRGKKAKAVVAELTYHCQGEIAELLQRGCL
>NC_019729.1|WP_015174672.1|871571_872897_-|transposase
MSQVITAKLKLKLTAEQKALVSQTALAYRDALNYTSQVAFDAGKTSNGAKLHKAVYNELRVRFGLGAQMACNVPRQVSGTYKTLWTKVKQSNDAIAKGYTKRRYKGLDKAPKYISRTCTLNYQRDYSFKAERQVIIITLQGRIVVSYDGYNKHLDLIANGARIGAAKIVYQRSSNIYYLMVSIEVETPKIDPLKITRVSGVDVGMRYLAVEIDLQNKAKFYSGKNARHKANRYHKARMTLQRKDTRSAKRRLIALSGKERRFIADVNHQIGKDIAKPNTLIGLENLTGIRDRTRTKSGKKASKKRRRANRNKAKWSYAELHGYIDYKANLNNSLATKVPAHYTSKSCPKCGHTSDANRQNKGLLFRCECCSHELHADLVGARNIAMRALLVRQDWMSTGSLSASPDVSSGETKAQILQRFSELRWSSDTSPHHSGIPLDAG
>NC_019729.1|WP_015174671.1|870919_871234_-|hypothetical-protein
MNNIQNYRLKCTLTFGDIYGQIIVWLIVIFLSLASALALWSSARQIYALATVGLILVLSLPFLLFAFVTTLLNNIEVLAVEPGTEPQPSATGNQSLQNPAESAG
>NC_019729.1|WP_015174670.1|869062_870790_-|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit
MLEHDVIIVGGGLAGCRAAVEIARTDPSLKVAVVAKTHPIRSHSVAAQGGMASSLQNVDPEDSWKAHAFDTVKGSDYLADQDAVEILTREAPGVVIDLEHMGVLFSRLPDGRIAQRAFGGHSHRRTCYAADKTGHAILHELVNNLRRCGVHIYQEWYVTRLILEEGQAKGVVMYRLLDGQIEVVRAKAVMFATGGYGRVYNTTSNDYASTGDGLAMTALAGLPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGDRFMANYAPSRMELAPRDITSRSISIEIRAGRGINVGGSAGGPFIYLDLRHMGREKIMSKIPFAWEEAHRLLGIDAVNQPMPVRPTVHYSMGGIPTNISGQVRSSPDSLVDGFFAAGEAACVSVHGANRLGSNSLLECVVYGKVTGATIAQFVQNRKLPVVDEQRYITEAKEQIQALVDRPGKYRINQIRQQYQDTMTEYCGVFRSAELMQEGLNKLEDLERQYEEVYLDDKGKLWNTEIVEALELRSLIIVGKMILTSALNRQESRGAHSREDFTERDDGNFLKHTMAYYSPAGIDLAYMPVAITMFEPQERKY
>NC_019729.1|WP_015174669.1|868294_868762_-|hypothetical-protein
MPSYAEIELEKSGLAELPLELDSKHEGYVYGQSFTRTWEILDIVAKLNGLQPLSSFYAECDIQKQWYDSAVGLQTVSGLLNKYFTIIGCGTVTFLSSESKRLDCELSGLPQDEAILKDAIRSKELFNYAMWDLRAYELILRGAVENGECFRIVVN
>NC_019729.1|WP_015174668.1|867835_868060_-|hypothetical-protein
MSKTTQTSQFQQALEAVEVLSLEDRAMLLDILQNRLRQQRRNELLKEVAEVRQEYAEGNVKFGSVADFMAELDD
>NC_019729.1|WP_015174667.1|867554_867836_-|addiction-module-toxin,-RelE/StbE-family
MKIGWTPKPIRTFKKLVCKNPQLRLLIEATLELLSEDCFNPSLRTQKLTGDLSGIWSCSIDYDHRILFEFVTDPEDEEEAILLLKMGSHDEVY
>NC_019729.1|WP_015174666.1|866935_867517_+|response-regulator-transcription-factor
MSDKFPHPPNPRLKMLIVEDGTACSIDLLYRQFRRKYQVFRAESGPAALEILAREGEVAVIICDEPTPQMSVTEFLRLTAVQYPDTSQIMLISYTEHFFEAIEAGQLCHYIPKPWNPEELNVFVSRLVDTYTLRKARTNELPQRGESAEQARQAEFQARRDAIPRLLGMGLSVEQVAEALSLSVEEVTDNAGG
>NC_019729.1|WP_015174665.1|865857_866751_+|Uma2-family-endonuclease
MTQSVNRVVLPPAFPDHTQLPDSDGTFVKNFQEHPQSLILTDSIGQILQQRHPDGQYAIGQDCGIYWRETEPPEKGAEAPDWFYVPNVPPNIDGQIRRSYVLWREHIAPLIALEFASGNGDEERDSLRDSFASRTPLSRSDEGMVTKPGKFWVYERVMRIPYYGIYQVNNGRLEVYRLIDGFYQLLELNQRGHFPIAPLGLELGLWQGSYQNQTMLWLRWWDEEGNLLSIGDERAQLERLRGEQQRERAESAEQARQAEFQARRDAIPRLLGMGLSVEQVAEALSLSVEEVTDNAGG
>NC_019729.1|WP_041622355.1|864691_865600_+|tetratricopeptide-repeat-protein
MEKANKRRGLITVVVVLSLIAFLGFSLVPILDSILKASQAQSQSTPTPTQTAQSGEKQSELLQAQARGYELVLQREPDNVTALRGLLQVRLELIGQGVGDIKDAIAPLEKLASLNPETTEYGILLAQAKERTGDREGAAQAYRSILASKPGEIKALQGLVNLLLVQQRPEAAIGLLQDTLKAAPAANLAKPESVDVTSVQLILGQVYAVQKRYEEAIAIYDESAKANPKDFRPTLGKAIVLKEQGKTDEAKTLFDRATQLAPPNYKDQINQLASGTPSPSPAAAKTPEPAASPSPEGALPKP
>NC_019729.1|WP_015174674.1|874171_874993_+|alpha/beta-hydrolase
MANANNKVRFLTPKPPKPDRPLFVFLPGMDGSGLLLRPQISKLANHFDIRCLTVPADDMASWEVLVSETIALIEAEKQAGKPKRPVYLCGESFGGCLAMKTVLEDPQVCDRLILVNPASSFRQQPWVQWGSYLTQWLPANLYPLSVIGLLPILASLGKIGRDDRRALLEAMQAVPQNTSVWRLALVRSFNVDENQLRGIKQPTLVIASGADRLLPSVVEAKLLVKVIPNAEMVLLANSGHACLLETDVNLYGIMQARNFLTKSEENLSLVKSH
>NC_019729.1|WP_015174675.1|875258_875975_-|DUF2996-domain-containing-protein
MPEEQQNPTAGESETPSASIENAPSSDTAETTDFPSTDQPQPTAKKPAAKKEPKNPTAGESETPSASIENAPSSDTAETTDLPSTDKPPAAAKKPAAKAEGDKPPAKAKKEKAPAVEDKPFAEFIQQDYLPALQTALTKQGVKDLEVSFAKQKLPVAGMSSAGDCWQVIGKFQEGQRQFNLYFPQENIQSQRAFSCAENNTKTSTLEPFLIDERKVTLDLMVFGVVQRLNAQKWLNLN
>NC_019729.1|WP_190274324.1|876016_876166_+|hypothetical-protein
MQVGAIDFGDRAHFLSKTNRERIAPSKKFELKTLSEGDRPQTSQLLWLF
>NC_019729.1|WP_015174676.1|876162_877050_-|hypothetical-protein
MSKTVFELVDTLPKDNMTVKALRALDFVVPGEWNNLVGFENTIRTVTGETDEELIQQIGERAIYLYNDKSEGYQRALWLYQTIDSASSALGTAALANKVAQNVPFLSMLGNLTPKPEKAQTIDLSLKLVTELLAFCQINGIPGDSIGDFAAALGDYGGESLMRMAALVCFDGLIPLGPDFIMATQSWIERLSPSDLQDNSAFKSIGGMIPGGSPAAQLGFIGESFNSVSGWMSSFVSDRGLTPQNVLGHLQSFVEISADKVDYVGAFLDMTTNYYEHTGVQTLARRLIERAVAEI
>NC_019729.1|WP_015174677.1|877188_877743_-|hypothetical-protein
MQFFPARRILAPFLISVLLLVTSCGQTQAPSRWDKAQQESTQKPGKAQQTTADKSTASNQNLPKKAVAGGKLNKYFPSSGGGFDRVFAQEKSGFAEAKLNKDGKNVAVLSINDIAGNPSAGAKFQQSTKQISGYPAVNQGANITAVLVANRYQVKVQSRNPSFTASDREAWLSKFNLGGLARLK
>NC_019729.1|WP_015174678.1|878080_878197_-|photosystem-I-reaction-center-subunit-VIII
MTGSYAASFLPWILIPVITWLMPVVVMGLLFIYIESDA
>NC_019729.1|WP_015174679.1|878254_878764_-|photosystem-I-reaction-center-protein-subunit-XI
MADPRDAELIKPFNGDPFTGHLATPISASDFTKAFIGNLPAYRKGLSPLVRGLEIGLAHGYFLVGPEIVFGPLRDYPEAANLGGLITALVLVLLGTAGMSAYGLVSFKQDNTSYPSANPMTPDSLRNAEGWSQFTAGFFIGGMGGVFAAYFLLENLKGVDAIFRGLVNN
>NC_019729.1|WP_015174680.1|878877_879594_-|TIGR04283-family-arsenosugar-biosynthesis-glycosyltransferase
MSPDNPHLKISIIIPVLNEAPTIAPVISTALQAQNVEIIVADGGSSDGTTDIAKSLGVRVICTAPGRATQMNAGAAAATGEILLFLHADTLLPRGYDSGARRVLANPSAVAGAFQLKIDARSLSLRLVETGVNWRSNFLQMPYGDQAIFLHAVTFDKIGGFPDLPLMEDFEFVRRLKKQGRIEIVPQPVLTSARRWQQLGVIKTTAINQIVIIGYFLGVSPDRLAFWYKRQKKNSSEN
>NC_019729.1|WP_015174681.1|880013_880631_-|TIGR04282-family-arsenosugar-biosynthesis-glycosyltransferase
MMPEKLIVFTRYPEPGTTKTRLIPVLGKTGAANLHRLMAQRTIACALSLQKSRRLSVEIHRAGGSQQLMQEWLGSDIFCENQIDGDLGARMTAAFQKSFNSGVEKTAIIGTDCPGLKAEIMAQAFEELSQHDLVLGPAKDGGYYLIGLRRAIPELFGGIHWGTSEVLACTRAIAQKLDLNIAYLPTLADIDRPEDLLGLDINMLK
>NC_019729.1|WP_015174682.1|880797_881766_-|quinolinate-synthase-NadA
MFTTAPAPNFTQSRLPHDLFAAINALKQELNAVILAHYYQDSEIQDIADFIGDSLELARKAANTSANVIVFAGVHFMAETAKILNPDKLVLLPDLNAGCSLADSCPPEAFAAFKADRPGHLVISYINCTAAIKAMSDIICTSSNAVKIVNQIPENQPIIFGPDRNLGRYVMEQTGRNMEIWQGACIVHENFSEKKIVQLKIENPEAEIIAHPECEPPVLRHANYIGSTTALLKYSQASSSQAFIVATEPGIIHQMQKQAPQKRFIPAPPNNNSCACNECPHMRLNTLEKLYLAMKNQTPEITMPLNIQLAALQPIQRMLEMS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_019729_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_11

908224-908400

Orphan

Consensus_repeat	Method
CGACTTACTGGAAGACCCAGAACTATC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019729_11

>merge|NC_019729|11|908224-908400|CRISPRCasFinder
CGACTTACTTGAAGACCCAGAATTATCATCAGCAGACAGCGATGAAAATAACGCAGATATAGGAGGCATCAGTGCCGACTTACTGGAAGACCCAGAACTATCTTCAGAGGATAACAATTCTGATGCAGTAGATTTAGCAGGAATCAGCAGCGACTTACTTGAAGACCCAGAACTATC

>NC_019729|11|11|908224-908400|CRISPRCasFinder
CGACTTACTTGAAGACCCAGAATTATC	ATCAGCAGACAGCGATGAAAATAACGCAGATATAGGAGGCATCAGTGC
CGACTTACTGGAAGACCCAGAACTATC	TTCAGAGGATAACAATTCTGATGCAGTAGATTTAGCAGGAATCAGCAG
CGACTTACTTGAAGACCCAGAACTATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174693.1\|896942_897449_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111641.1\|903992_905059_+\|ISKra4-family-transposase	unknown	unknown	unknown
NC_019729.1\|WP_015174703.1\|908574_909903_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|377422
NC_019729.1\|WP_015174701.1\|906001_907177_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174706.1\|911201_911720_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_015174700.1\|905482_905932_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174712.1\|918551_919130_+\|DUF3727-domain-containing-protein	unknown	unknown	gnl\|CDD\|372165
NC_019729.1\|WP_015174692.1\|896721_896943_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174694.1\|897445_897943_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174695.1\|898174_899608_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271177
NC_019729.1\|WP_015174710.1\|916185_917517_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_019729.1\|WP_015174707.1\|912387_912891_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174699.1\|905129_905366_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174705.1\|910273_910885_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|376746
NC_019729.1\|WP_015174696.1\|899804_899951_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174711.1\|917779_918238_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_019729.1\|WP_015174698.1\|900497_901994_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212110
NC_019729.1\|WP_015174708.1\|912999_913440_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284762
NC_019729.1\|WP_015174709.1\|914812_915994_+\|DUF129-domain-containing-protein	unknown	unknown	gnl\|CDD\|376711
NC_019729.1\|WP_015174704.1\|909924_910224_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174706.1\|911201_911720_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.52617e-10
NC_019729.1\|WP_015174703.1\|908574_909903_+\|O-antigen-ligase-family-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	9.7912e-05
NC_019729.1\|WP_015174708.1\|912999_913440_+\|hypothetical-protein	gnl\|CDD\|284762	pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein. This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear.	2.71824e-05
NC_019729.1\|WP_015174705.1\|910273_910885_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	6.43171e-86
NC_019729.1\|WP_015174712.1\|918551_919130_+\|DUF3727-domain-containing-protein	gnl\|CDD\|372165	pfam12527, DUF3727, Protein of unknown function (DUF3727). This domain family is found in bacteria and eukaryotes, and is approximately 100 amino acids in length.	2.39169e-33
NC_019729.1\|WP_015174698.1\|900497_901994_+\|hypothetical-protein	gnl\|CDD\|212110	cd10798, GH57N_like_1, Uncharacterized subfamily of glycoside hydrolase family 57 (GH57). This subfamily of uncharacterized bacterial proteins, shows high sequence homology to glycoside hydrolase family 57 (GH57). Glycoside hydrolase family 57(GH57) is a chiefly prokaryotic family with the majority of thermostable enzymes coming from extremophiles (many of these are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22).	1.414e-140
NC_019729.1\|WP_015174710.1\|916185_917517_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.25902e-13
NC_019729.1\|WP_015174695.1\|898174_899608_-\|hypothetical-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	0.00495792
NC_019729.1\|WP_015174709.1\|914812_915994_+\|DUF129-domain-containing-protein	gnl\|CDD\|376711	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase. F420-0:Gamma-glutamyl ligase (EC:6.3.2.-) is an enzyme involved in F420 biosynthesis pathway. It catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0). This reaction produces polyglutamated F420 derivatives. GTP + F420-0 + n L-glutamate -> GDP + phosphate + F420-n.	0.00505983
NC_019729.1\|WP_015174711.1\|917779_918238_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.15755e-51

>NC_019729.1|WP_015174701.1|906001_907177_+|hypothetical-protein
MTTREPTNNNAIEVDGICIDIKGPDIIVLPIPNSNWGLITSVDFRLGITNNSSSALPLHIYQSVVPQLVTSDGQEIPRISVLEPELAPTPVNIPQQQNWVETFTRFFANLVNWLKFRNSAADSERILYLMSLEKYTSLTVTALLFWNHDRLQLQFIPAGNVSRFEALQAQQYRLRFIGINFNTNQPNSEVETTEVADSEQPASQFVNLRLVEPLATNKNAVEVDGICFETVVAEQIVISDSELDSRIYMEFGINITNNTLAPVRFNLFDSLIPQLAERDRYREQTWPFYRMEIAPKESHFPLVMPGESISFLSPGSLFWDKSNQLCLQITAADAGIWFFSKLNLGKYYIHFAYRNQSTAIEIYHPTLKNITLMTELWTGFIFAPYVELNLV
>NC_019729.1|WP_015174700.1|905482_905932_+|hypothetical-protein
MNYGEKHYCNNLHCSQPKNLHCNQFCITCSRTIGPHPILDIRWEFVAATKKEIASQSSLPERGRSQLCYGYLPGRLRDTPENYRDPSLPSYQTNSDYWSNSPALQNEYRQVLGYYTYVLVKQPGDSSVRWGKLFWPIIIGAAVWFWFFR
>NC_019729.1|WP_015174699.1|905129_905366_+|hypothetical-protein
MGFVQVTQKELALQERFPPRSKLNLTYGYLPSRRQSMPDNYLSKSSYSWQSSAPEKNDCQRVLGHYIMSGWLVMINFS
>NC_019729.1|WP_150111641.1|903992_905059_+|ISKra4-family-transposase
MTPSDQQQLKAHLKAVAKILYRNTEPTELKTFESIEKAVRQKMLSEVGPEIGSFFFPAVSGIQTGKPRKIKSIIGSLDITDNQAKYFGLKAYSQFSPLMENCCLLISANESYQMAEKDLEKFTGIKISHSTLQRLVKRQELELPTSQQGVKEITLDGGKVRLRNATKGESCYWKDYKAVCLDNIYAGAFFQNNQDLIDWTNSQKLLHPMYCLGDGHAGIWNIFKEIGDNEQRQEILDWYHLKENLYKVGGSIKRLKLAENMLWQGKVDEVINLFKDFKGQAFKTFCNYLDTHRCRIVNYQYYKEESISSIGSGTVESTIKRIGLRVKISGAQWNIENVSSMLALRCAYLNGQLSI
>NC_019729.1|WP_015174698.1|900497_901994_+|hypothetical-protein
MPAIAQSPNLPILQEINSGLPNICGSEAEISAAANSNEPVFLPTTNLRLENIQAGFACALHMHQPTIPAGANGELIGNLQHMFEHPDRGDNHNAGVFAWCYSRMGEFIPQLIAEGCNPRIMLDYSGNLLWGLRQMGRDDIFNNLKRITCEPQYQTHVEWLGTMWSHAVIPSTPIPDIKLQIQAWQHHFAAIFGLDALKRVKGFSPPEMHFPNHPDTLYEYIKALKECGYRWLMVQEHSVENPDGSGLSQDQKYIPNRLVARNSHGETISITALIKTQGSDTKLVGQMQPYYEAKGRNKQQIGSVTVPSLVTQIADGENGGVMMNEFPSAFFKAWHENREQGGGKSGVVGLNGTEYLEIIEAAGVNPEDYPICQGINQHKIWQLVDPDSATPEKVESAIDQLKQTDHNFHMDGASWTNDLSWVKGYENVLEPMNQLSAAFHKKYDPLLQQDAAVTKQFEYQQALLYNLLLQTSCFRYWGQGTWTDYAREIYNRGAALMK
>NC_019729.1|WP_015174696.1|899804_899951_-|hypothetical-protein
MAKPIVSYRRIDQLKAIAFDRGLSNEDARHFGKLSKTATWEALLELYP
>NC_019729.1|WP_015174695.1|898174_899608_-|hypothetical-protein
MSEKSYPVTASTTADYLIGYERILDYFKQAQKECPKGVGLKRDSKASGGYITLQFKLGIKRVNKTCGCYLTMQGITDALRRAHLVASALESLKTESQFWAWYDDVILEKNVIKNDLMTFGEAIAKVEKEYWDGHTKRRQPRDKNNASHQYSWRCVYGHYFKLLPQNIVLNMADILLVVHSKQVGTKCFKNCLCAMRKLAETVGNTDLLIRLKEINGTQTQFREDLQSISVDEFLKFHEDVLAVSDDKRYNLESRKRWLWVFSMQVVYGFRVHEVFAIQNVNEPFKTKDGITIPALSEPTNTKMIAVVGEKTKLETTTKTGYRLCVPMLPPTHSDLIERLGIKSGQLPEVRLTSSNPKTISGAYNDRAWATLKRWNKGFTQSHALRHLANLNGQMAGMSQETRAKSLGHSTQMNEGIYKKRANTQTTIDLLTHSITEAVPLGSAIGVLKQLGSDGKSIKLLAAIYGITSDEVMELLAE
>NC_019729.1|WP_015174694.1|897445_897943_-|hypothetical-protein
MTKPTVSYRRIDQLKVIAYDRGFTNEDAKQFGKLSKTATWEALLELYLVDGESLDTVNVDTVDTLLDSVDSLNANNVDATFEPLDTQCVDTVDTLDWTNDGSFPVCGFTHQNSTFLDWVDFSQLIALVLASAGVFVLAMSMWRQINPLNLFPSPVRINIQIGTKL
>NC_019729.1|WP_015174693.1|896942_897449_-|hypothetical-protein
MSLQLRLFGGNSDAGKIASNDGGHAIDKSKVLASTDASVITPLNPGNFSSIRSVPVVPAPRYFTKEEADAMKDLAKEKTDGAKQSKRAYEALAKVEEADAKVHRHHRKYEGVVADNELGKKRSDTRLAKHLHSLRPGYARLGLGIDKADSDARTRIDAIKAKLTGGAS
>NC_019729.1|WP_015174692.1|896721_896943_-|hypothetical-protein
MEYMWLSGNKKEVKKLVEALRANGFTFDLAHFVEISNSPFGRNRCSYTLENFRPPAVATPQPRPWDAVLGGKH
>NC_019729.1|WP_015174703.1|908574_909903_+|O-antigen-ligase-family-protein
MKTLYTILFTLSIILINPAGSSRGLIWTSPKVLIIWLIVGVNLALLWEQRKALTIPRQWKISLILWTIFLSIGAISTLQSPFPLTSFFGQDQMGDGWLYWLLIAAFTLSNSLLLTVQPQLINSQFQGLLIGGIILSLSIFPQIIDWRIDYTATMGQIIRADVNASSIFQGQQPIGLYSHRGHAAIVLALIIITAIFGWFSRFTATKLTVITLILTVPALLLTSTRSAILALMVASAYLLRGKYYKILAGIVPIAIIAIGIMTVSRPLDWSKPSIAQIMSSRSPMWTLSARGIKKHPLFGWGFDGFGIAYPYIRNPQVTPIVVNLDEFTYDYINIKGEISTREIPTYKAHNWILDTTLSVGIFGLVAGIALWGYYICLALNSSSLRGVEAVAIAYLIFTLTWFDCAQYAHIAWWTISLAAVKSACATRFSRFRAESGQLLITN
>NC_019729.1|WP_015174704.1|909924_910224_-|hypothetical-protein
MAYSSENPIVQLKKCLSLVQDVNTHTEANRAFEQLCGIIDAENPMAAQLLEMLWEEAIMARRSALFWQQMSDVEKDMANRMMENMTQMRQNYLRLMQEM
>NC_019729.1|WP_015174705.1|910273_910885_-|DNA-3-methyladenine-glycosylase
MSANTQIVESFWLARPSTSVAPDLLGCTLVRQFPDGETMRGIIVETEAYGPGDPACHAYRQRTSRNQVMFGPPGMSYVYLIYGIYHCFNVVTDAEGVASAVLVRALQLDAVPQEFAGISDKKRSRLAAGPGKLCKVLEIDRTLSGFPLGAGQPLRLEHRSEHFQQAVEEGTINFVQTTRIGISQGIDLPWRWYVGNSTAVSQL
>NC_019729.1|WP_015174706.1|911201_911720_-|pentapeptide-repeat-containing-protein
MKLNNLFTAALSIAGVFTAAKYLTFSNQQNQVKELLQTKQCPECNFSNANLKGLDLQGVNLQGANLEGANLSGAKLANANLKNANLNRANLTGADLGCAGITFNLEANEKEANMDFNVTAIPEQNNPENAVAGFNMKATERGATMRFNLIGCADLSNASLQEAKMPDGKIHP
>NC_019729.1|WP_015174707.1|912387_912891_+|hypothetical-protein
MNTIKSEPKRSRFMALLLTTLLTFPFMSACGSSQQSSAPPPPVDDTRAGGVQTNRGPSPTPQAKKGLSNAQKVGITLVGAAALYYLYRQHQNKQEKGPQGKYYLSKNGRVYYRDAQNRAHWVTPPPEGIKVPESEALRYREFQGYNNQTTGRDLTSVPEATSPIPAQ
>NC_019729.1|WP_015174708.1|912999_913440_+|hypothetical-protein
MVDGFLRKLKDAIVGPDSEQVDPDGYYEDASNPGQYGNVTPASEDPYGDPADYGQYGNARPASEDPYGDPADYGQYGNVTPASEDPYGDPADYAGTDYGQYGNLTPASEDPYGDPADYVADAGMFGNVSPASEDPYGDPADEEGFS
>NC_019729.1|WP_015174709.1|914812_915994_+|DUF129-domain-containing-protein
MIETLATGIAAAGSLLALGGLGLELNYRRTGSPNKLELTAGEWHLAVNEPNRYLLVGEMEFRNLTQRFEVMLPEVRAQVKLLSDGSLDGVTSQTKVIPCHKDAAARADDYWFGYIVKAQKNTKIKVSVDIQGQDLTKLQSAWVQVHFVTYGPGGRIPKVRNVVVPLQFPNSDTVPTARNVGVAEVLPIRTHILAELDNPVEIVKRYVLPRAQKGDIVALAETPLALMQGRYRHPSEVKPGWAAKRVCLFFLPTSSLATACGMQTLVDVVGPWRVVAAFAIGAAAKIFGKPGVFYQLAGEQARLIDDVTGTLPPFDQFIVLGPDNPQKVVEEIQRETGLAAAIVDANDLKAVKILAATSDLSVTFLEQALRSNPAGNADERTPVVLIRPLPQKS
>NC_019729.1|WP_015174710.1|916185_917517_+|GNAT-family-N-acetyltransferase
MTSFPSQNQNQVVIRPFQYRDIEVMEQLCAETAEEPENRKGASCDAVLGRKLQQIRRWYGLLKIFSWFPNPCQFLFRAHVAEEEGSVKGIIQISPFNRTRSTWRIDRIGVDPEARSKGIGSMLLRYCFEAVWEARTWLLEVNVGDKNSLALYRQNGFQPLAQMTYWTIAPERLQEMANSTPDLPNLLPVSNADAQLLYQLDTASMPPLVRQVFDRHIQDFKTSFFGALVEGVRQWLGKTEVVSGYVFEPQRKAAIGYFQVQLSRNGHQPHVAQLTVHPAYTWLYPELLSQMARLVQDFPVQSLQLVSADYQPEREAYLEQFGAVRVEHSLLMSRSVWHKLRESKLVSLEGLQLSEMLQSFQPTRKPVPGRMSWLGPMAGEASAGPASSEIKPLLADSGNSQTNQVNPSGGQNSESAATDGSSILPLNLPELPLDGGWPGELNS
>NC_019729.1|WP_015174711.1|917779_918238_+|Holliday-junction-resolvase-RuvX
MSNSKLWISALGLDIGLKRVGIAGCDGTGLIATGITTLVRSSFDRDVAYLRELVRERRVQILVAGLPYSLSGELGAQARQVQKYANRIARALEIPLEYVDERLTSVEAEELMKTQGISPSQNKGAIDRKAAALILQQWLDERRQNISALPNP
>NC_019729.1|WP_015174712.1|918551_919130_+|DUF3727-domain-containing-protein
MSSSPYRKKENGNSNEESVTLTDEVGRSLTCNIEYSMNLEGQEYALLLPIDSPVEIFTWQGDDTDEAAIPVEDETEIDKIFDTAKVVLQEQNLTLRRTAVTLTVVGELPEFPEEDMASDADPDEESEFEELMWLTSFYHEEQEYAIYTPLDPFFILARMNDDGKPELLSEEEFQRLEPMLPMLEDQFFDELD

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Crispr_ID: NC_019729_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_12

984953-985044

TypeIII-D

Consensus_repeat	Method
GACTTTTGCTATGAGACGGGGGTTTCAACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_12

>merge|NC_019729|12|984953-985044|CRISPRCasFinder
GACTTTTGCTATGAGACGGGGGTTTCAACCCCAGGCGGACTCGATGAACCACCCTTAGAAGACTGTTGCTATGAGACGGGGGTTTCAACCCC

>NC_019729|12|12|984953-985044|CRISPRCasFinder
GACTTTTGCTATGAGACGGGGGTTTCAACCCC	AGGCGGACTCGATGAACCACCCTTAGAA
GACTGTTGCTATGAGACGGGGGTTTCAACCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174769.1\|990168_990825_+\|DUF1190-domain-containing-protein	unknown	unknown	gnl\|CDD\|377691
NC_019729.1\|WP_015174772.1\|993317_994067_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_019729.1\|WP_041622917.1\|995749_996109_+\|transposase	unknown	unknown	gnl\|CDD\|225949
NC_019729.1\|WP_015174761.1\|974781_977757_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143442
NC_019729.1\|WP_015174763.1\|979860_980340_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111491.1\|972458_973034_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_019729.1\|WP_015174760.1\|973779_974697_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237864
NC_019729.1\|WP_015174764.1\|980618_982664_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NC_019729.1\|WP_015174765.1\|983049_984099_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|223469
NC_019729.1\|WP_015174774.1\|996936_997086_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274326.1\|989777_989954_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174758.1\|969251_969593_+\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906
NC_019729.1\|WP_015179736.1\|996161_996695_+\|transposase	unknown	unknown	gnl\|CDD\|315923
NC_019729.1\|WP_015174773.1\|994032_995493_-\|ABC-transporter-substrate-binding-protein/permease	unknown	unknown	gnl\|CDD\|270346
NC_019729.1\|WP_015174770.1\|991105_992413_+\|glutathionylspermidine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223825
NC_019729.1\|WP_015174759.1\|969693_972306_+\|protein-arginine-deiminase	unknown	unknown	gnl\|CDD\|367320
NC_019729.1\|WP_041622362.1\|973039_973531_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_019729.1\|WP_015174771.1\|992431_993157_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274456.1\|989883_990060_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111492.1\|978010_979684_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|227621

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174769.1\|990168_990825_+\|DUF1190-domain-containing-protein	gnl\|CDD\|377691	pfam06693, DUF1190, Protein of unknown function (DUF1190). This family consists of several hypothetical Enterobacterial proteins of around 212 residues in length and is known as YjfM in Escherichia coli. The function of this family is unknown.	1.3974e-09
NC_019729.1\|WP_015174772.1\|993317_994067_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.51268e-150
NC_019729.1\|WP_041622917.1\|995749_996109_+\|transposase	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.27548e-16
NC_019729.1\|WP_015174761.1\|974781_977757_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|143442	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.	0
NC_019729.1\|WP_150111491.1\|972458_973034_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	8.97722e-21
NC_019729.1\|WP_015174760.1\|973779_974697_+\|hypothetical-protein	gnl\|CDD\|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	4.28596e-05
NC_019729.1\|WP_015174764.1\|980618_982664_-\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	4.3856e-87
NC_019729.1\|WP_015174765.1\|983049_984099_+\|flippase-like-domain-containing-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	0.00092031
NC_019729.1\|WP_015174758.1\|969251_969593_+\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	1.11408e-22
NC_019729.1\|WP_015179736.1\|996161_996695_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	8.40235e-42
NC_019729.1\|WP_015174773.1\|994032_995493_-\|ABC-transporter-substrate-binding-protein/permease	gnl\|CDD\|270346	cd13628, PBP2_Ala, Periplasmic substrate binding domain of ABC-type transporter specific to alanine; the type 2 periplasmic binding protein. This periplasmic substrate component serves as an initial receptor in the ABC transport of glutamine in eubacteria and archaea. After binding the alanine with high affinity, this domain Interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. This alanine specific domain belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.47197e-85
NC_019729.1\|WP_015174770.1\|991105_992413_+\|glutathionylspermidine-synthase-family-protein	gnl\|CDD\|223825	COG0754, Gsp, Glutathionylspermidine synthase [Amino acid transport and metabolism].	4.32751e-104
NC_019729.1\|WP_015174759.1\|969693_972306_+\|protein-arginine-deiminase	gnl\|CDD\|367320	pfam03068, PAD, Protein-arginine deiminase (PAD). Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.	2.67604e-135
NC_019729.1\|WP_041622362.1\|973039_973531_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	2.50326e-07
NC_019729.1\|WP_150111492.1\|978010_979684_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	5.97113e-66

>NC_019729.1|WP_015174765.1|983049_984099_+|flippase-like-domain-containing-protein
MGKQHLHRIQSFLKIAKSHLKPYLRYLILGGTFLFIAKALLTHWREVANIQIRSESFPLLAIALGVTLLSLIFVGWVWMLILREFRQPVTAAWAIQVFLKTNIAKYLPGNIWHFWGRILDAKKAGIFPKAATLSVLLEPLLMASAGVLIGLICFDKFNWFLRIVGCAAILTAIHPRILNPIVLFVERLKLSKNNGANSKAGEAAGEELNFRVESSSNIPKKTSNVKSRRQINLPIKRYPLVPLIGQMCFIGLRGCGFLLTVTALTPVNFSNIPNLFGAFCFAFVVGLVVPGAPGGMGVFEATAIALLSDRFSTGIILSAVALYRIISILADVSGAVLAKLDRQRDRRSK
>NC_019729.1|WP_015174764.1|980618_982664_-|S8-family-serine-peptidase
MPGPSPDGLSYLLDDSPNSFALTPGFLTPYPNGFFALGGNDFIVGSSDAERISGDNGNDRILGGGNSDTLLGGAGNDVLNGGAGADFLFGDAGSDTLQGGKGGDALNGGDGSDVLVGDGGKDTLTGGLGPDIFVLRSDSAVSDPAAADVITDFNSFVDSIGLTDNLTEADLILEEISIAPGISNTLIKIRQSNAILGLVANASPQDLANTFISATTVLGNQLDRARDLGVLGATQTIADSVSNARPDGLYRFTLPATSDFNLTVSGLTADVDVALIKDLNGDNSIDFTDIIASSQQPDLSPEAIDINGLAAGTYFVRVYQYQGSTNFSLNLSATPATVSPNNPSNLQGFDSRFGFGLVNAAAAVAKAQGTATFPDVPDLGGDEWGRDLIKAPEVWAQGLTGDGIVVAVIDSGVDYNHPDLTGNIWSNAGETGVDAIGRNKASNGVDDDGNGFVDDFRGWDFVNNDNDPMDDNSHGTHIAGLVAAKKDGVGITGTAPTAKIMPLKILDSAGVGKIRDEINAINYAVANGAKIINVSLGGQQLNAQELDAIRAAEAQGAIVISAAGNDARLQPDYPARFANEVGIAVGAVSRNGLFADYSNQAGAEGINYFVAPGGDGGRADSGDIYSTVPLSQPGIPYRYFAGTSMAVPQVAGVIALMLQANPSLTPADIKRILAETANRAV
>NC_019729.1|WP_015174763.1|979860_980340_+|hypothetical-protein
MTVPETSNIRKLLCDPDLGLIPHLEKCLKDLHSSAIANGDIFKVEPYDIEFKSCHTQKHPNDQKPLVTQSVLIKFPLTGKVQDKMHLYLIATELQNQIDSKIIDWSALERRQYDIQGIPLKQPITKIDGQMNYELVFDRPTYCCITLCRQFDLTYAANF
>NC_019729.1|WP_150111492.1|978010_979684_+|glycosyltransferase-family-39-protein
MESTKDRDRLNSHNPSLDKWLRFLIIAVLVIGILFRFANLDRKFYWIDETYTSLRVSGYTEAEIIKQISYQKITSPADLQKYQQINSEKTVRDTLNSLATEDPQHPPLYYVLARYWAQWFGSSVAAMRSLAAVISLLVFPAIYWLAWELFESSAVAWMAIAIFAISPYHILFAQEARQYSLWTVTTILSTAALLRAMRATDANQNPIWLVYHWTIYAVMTTMGFYTHLLFVCVAAAHAIYVAVIANWRDVKTFISYYVASLIASIGFMPSLINTVENFNQVRSTTAWAEQTNYLRLVSRWVGSVTIAFFDIGIDGTANAAQLALLIPVGIVILTLVGYALYYLCRQTPKRVWLIVLLLIATTALFLAVPDLIKGGRRSANPRYLVPFYVGIQLAVAYLLSAKISNNLENFKQQKLWKIVIFAVFSAGIISGGVSSQADIWWNKGSGWLRALEVAGTVNQASNPLIISDANIAYIMPLSYYLEPKVKLLIEPRCYTSCYKNRELAKKKPQPPQIPGGFSELFVYRPSSTLRSAIQQQNYQIEPADTNVELNLWKITKK
>NC_019729.1|WP_015174761.1|974781_977757_+|L-glutamate-gamma-semialdehyde-dehydrogenase
MIAQVSENIYEAKTQEIAKEILRLTQEKKRSFFGQLQDQMRWDDKLMDWAMASPGLRVQLFRFIDCLPALRSRPEIARHLQEYLTAEEVELPEALKKLLNFASPDSVPGQLAATTVAPAVETLAHKYISGENIKQVIKTLERLRKDKMGFTVDLLGEAVITETEAQIYLNRYLELMAELANAAKNWSQVDAIDTADGETLPRVQVSVKLTAFYSQFDPLDAKGSEEKVSERIRLLLRRAKELGAAVHFDMEQYAYKSLTLTILKDLLLEEEFRSRTDIGITLQAYLRDSAQDLRNLISWAKKRGNPVTVRLVKGAYWDQETIKAMQKDWPQPVYNDKVATDANFEQMTQLLLENHEYLYAAIGSHNVRSQARAIAIAETLNIPRRRFEMQVLYGMGDKLAKLLVDRGYRVRVYCPYGDLLPGMAYLIRRLLENTANSSFIRQSSEEMPIEQLLAAPVASGNDQLVYSKVFPNVADTDYANTKLRQQAETAIKSVRANLGKTYLPLIDGEYQNTEATVNSLNPSNPTEVVGTIGLLSEEQAKQALEAAKSAFTSWRKTPVRQRAGVLRKAAELMEQRRHELSAWMVFEVGKPVRECDAEVSEAIDFCRYYADEMERLEQGKNYDVAGETNRYTYQPRGISLIISPWNFPLAIPVGMTVASLVAGNCTLLKPAEVSSVIAAKITEILLEAGIPKGVFQYVPCKGSTVGAYMVKHPDVHMITFTGSQEVGCQIYADAAILQPGQKHLKRVIAEMGGKNAIIVDESADLDQAVAGVVYSAFGYSGQKCSACSRVIVVESVYDNFVARLVEATRSLNVGPAENPGTQVGPVIDANAQSRIREYIETGRAEAKIALEMPAPETGYFVGPVIVTEVSPTATIAQEEIFGPVLSVMRAKNFSEAIAIANGTNFALTGGLYSRTPSHIDRASSDFEVGNLYINRGITGAVVSRQPFGGFKLSGVGSKAGGPDYLLQFLEPRTITENIQRQGFAPIEGVDD
>NC_019729.1|WP_015174760.1|973779_974697_+|hypothetical-protein
MSDEQEKKQILTQPPETISPTSDEFDRSEIASSDSTSAPPETPAEIAAPEDISAPIDAAETIPIAADSAPETTQITSYPPPTIPIANPDAKPARSWQILAVFLSGMLVGSVLSLGSLLAWRMYQERANLQIKLPADVPLPESPSPVATAPVNRRPGLPPAPGTRLPATIPPSPRPTQIPSLSGVPQLASPLPSPSPSPSPTPAAVETPVTERVYFQAGATGTTLSNSLRANISRRYLLECNSGQTMTINVQEGQVSAAIIAPNGENLGTADSTGQWQGQLASSGDYTIEISGDRQANYQVKIEVK
>NC_019729.1|WP_041622362.1|973039_973531_-|helix-turn-helix-domain-containing-protein
MKVNYPERIEDTVSELKIIMSQQRTVTNRQKVQALYLLKSGLSQSITNVAEVLGVHRITVQRWFKQYSEGGWSSLLKLRKSTGRPRTISSEIIAGISRKIQAESCEFKSYKEIARWVEENYQVSVKYQTLHKQVRYRMKAKLKVPRRLSNKKDPAAAIEFKKN
>NC_019729.1|WP_150111491.1|972458_973034_-|IS630-family-transposase
MLKVACWLDYVDPNPAKKGLKYWCQDETRIGLKTIERKKITARGVKPIGLVQWNFKAYYLYGAVAPQTGENFWLEFSHLDGQCFQIFLDNLAAEYPEHLNVVQLDNGKFHHSSQLKIPDNILLVFQPPYSPELNPIERVWQYIKQELSWGLYDNLDEIKEKVRSFLEEFSTETIASIAGWDYILSALATVA
>NC_019729.1|WP_015174759.1|969693_972306_+|protein-arginine-deiminase
MRWVRYIAIAIINGFGVVIGIIWVAVPATVAQPSLNYQLALSGRQPDGENPQSLSELYKLRDRLKVQLDNLAKTSDSAPFLAELWQSAIHRQQSQTLTQQLQNVQIQIQIEERAKYNWDDAAKLAAQAVEIGRTSNPSSATWEQSQRLWQLAINTLRLIPHDSFLADGAIDKTIEYQGNLSAATYEMQVARSVEKVRAEEEEIRERARQEQEKKEFARRERERKEQEKKDRARKELERQEFERQELARKKIERQELARKEIERQEFERQELARKEIERQEFERQELARKEIERQELARKEVERQELERQELARKELERQELERNQQATPQPTPESTAIPTPALVTAAASPSNFFFAGDTNRDGQINEQDEAGKEQWSLSKGALILFNDRNNDRGKIPTWKQTKVNTPRRAAMLSQVNLTLSENFKTSQLFITADSIASPHISVFQKTGDGWQPVDISGAKPLVFSTNIVLGVEAKQFADRNWNGTVNLKATALNNGQEIASTTIQMGVSPWMIPPNTAPVTEIQVSDRGSVNSEFISQLKQAVEPTGAQVKILQGDRTWMQDTQKNGYVQLPDKSAIRLFNVAIKSNSEQDKNPPVKSTQNRDLKVFKIGNPRSLDPVSQWSDGYGNLQVTPPIPGHPLGRVYYGNSGNASFNPEVLDFIQAQRIQGPPVDIDTSWLLTRQVDEIINFIPTQTPGQYVMAIASPEAGVKLLQELEGRGYGDVTINRGLSTQTTVSAALKNRALIQHNLYLQKQKLNPIIEKLKREFLLRDDQIVQVPVMFGYSGYAWWPNMVNSVPVNGKLLVSNPRGPMIDGVDYTQERLRQLLLPAGVSVSFLDDRYYQELKGNVQSATNTVRKPEERPFWQSLPNNY
>NC_019729.1|WP_015174758.1|969251_969593_+|DUF5615-family-PIN-like-protein
MARFYTDENFPLAVVELLRTLGHDVLTAREAGNANLQIPDEDVLAFAASNSRTVLTRNRRHFMRLHLQNSDHSGIVVCTEDPNFERLATRINDAISAIDTLNGKLIRVNRPST
>NC_019729.1|WP_190274326.1|989777_989954_+|hypothetical-protein
MGVFEATAIALLSDRFSTGIILSAVALYRIISILADVSGAVLAKLDRQRDRHSQKRRI
>NC_019729.1|WP_190274456.1|989883_990060_+|hypothetical-protein
MFPVLFWQSSIASAIGTVKKGEFEIKYLRNIICCDRGIPESANVVTAIIKVVSANSQT
>NC_019729.1|WP_015174769.1|990168_990825_+|DUF1190-domain-containing-protein
MTHNNNRTTTIRYLLITSGVLAIGGLGYLAYTMLHQPNEVRYYESEQQCIVDAANQSNGFTKEQCQAQFRYAMQEYERITPVYRTQSECQEDTASICSQVSNSSVATPGWRPEFGGFYFTDDVDDDDAPPTAVNGVNGGSYTVYPVQPVYRSHIGIVTPDRTLITRPLQGIPLDSPYFSSSRDTPNRPPGHAARGTIKGRGSFGNAVRSTAPLGSGGK
>NC_019729.1|WP_015174770.1|991105_992413_+|glutathionylspermidine-synthase-family-protein
MYPFLFQRRRNWQQHVLDNAYQCQPLADINQRYWAEALDRPFGVMFSRQEEARLWDATEALWDMCREFLDWFFTADGLENRMNKLAIPPAFWEAIQVSWDRVDEAEDMSLYTRFDLAVTEDGKISLLEINGETPLLGAETVYQWLWLDDMKKTSRDLRSLPNDANQFNNFWDEVAGRFRTLSRHYDLKQFGLSLLIDEHLSEDTEMAGQLVEIINQELGNDRFFTQLVGLRNHLGVDEEGFFVDQFNNRILRLWKIVDWLDLQLASQSFNADEALASRLIAGDVKIIEPLWKQILSNKGSMVWMWELFGNHPVYAQFLLPTFFTDTISIESTALLTQMHVKKPLVGLEGVGVSIETGDFVAGAVHTREAMGYDREGFIIQSYQPLPEYFGYHFVVGSWIVGDTPSGIVLRGDTNPITGRHCLIVPHIVSDRLVNT
>NC_019729.1|WP_015174771.1|992431_993157_+|hypothetical-protein
MKLQTHDVRGIPILSSEWSVDEFIADELKIPEVAPTIQAGFMDLLSRDVFSEGDSQPLYEHLLSRSSEFSLEFMSAIELWLQDELRHYVALRKVYHMVSGLSPEAIDQKNQSRVHELEPISFLIENEFTILVGLMFDEMGSVWSYHRDIKEFYQHYGKGFARVGHLVTQDEGRHFRNAATLIQHRHPDKIDRIEPLLEKISEMEANLAYYPKTFFLDHAQERHRFPKDFNTQVIQRILSFF
>NC_019729.1|WP_015174772.1|993317_994067_-|amino-acid-ABC-transporter-ATP-binding-protein
MYSNADSKLAVKVDRLYKSFGNLKVLREITTEIHKGEVIAIIGPSGCGKSTFLRCLNLLEIPTSGHIYIDGVDITAPKADILKIRQKVGMVFQHFHLFPHMTVLQNVTYAPVKVKQVESDEARQKGLELLEKVGLSDKADVYPSKLSGGQKQRVAIARCLAMEPEILLMDEPTSALDPEMVKEVLDVMKALTKTGITMAIVTHEMGFAREVAHRILFLDGGKVAEDVPPQEFFSNPQCDRAKQFLEKML
>NC_019729.1|WP_015174773.1|994032_995493_-|ABC-transporter-substrate-binding-protein/permease
MKRLKLKSMLAAIAIAFCLIAIASYAQANKTLTLATSPDYPPYEFKDTAVSGNEIIGFDIDIAKYITKELGYELKVVGMDFNGLIPALQAGRADFVMAGMTPTAERKKNVDFSDLYYEAQNTIVANKGSNLTKAEDLAGKKVGVQLGSIQQEAVKKMPGVQLAALNRIPDIIQEIKSNRIAAGVIEDTVATGYAAANPDLEFNTIPNTEESGSAIAFPKGSRLVPEFNRVLQQMKASGQIKELATKWFSRPIPQEPAQANQPAVASKFGLDFGKILPSLPYILSGIWVTLTFTLLSAFLGFIWGIVLSLFKISSIKPLFWFATAYTSIFRGTPLILQLTLVYFATPQLTGYNISALQAGVITFFLNSGAYISETIRAGIQAVDKGQKEAAESLGVPYKLMMGDIILPQALKNILPALVNESIALLKDSALVSVIGVEDLLRRGTIVGAEKYIYFEPLIFVGVIYYLMVLSLTWGANVLERRLQTSS
>NC_019729.1|WP_041622917.1|995749_996109_+|transposase
MKAYSIEFRKKIVKAYEQGDTSVRKVAQRFDVSKAFVQKILKQKQTTGHVQPKKQGGSLKSVLNSRRTELTQMVEKYPDSTLSEYCEYWLMNYKEAVSPSMMCRELQKENLTRKKDHTQ
>NC_019729.1|WP_015179736.1|996161_996695_+|transposase
MKNIDPDNLVFLDEMGVLLGLTRTHARSICGSRVYDLKPFYRGAKVTVVGAISLKKVVGLMTLNGSMDGRAFEVFIEHFLVPNLWEGAVVVMDNLPAHKLGTIGSLIQAAGASLLNLSPYSPDFNPIELWWSQLKSFLRQFSPTTTKMVDILLATAVDLVNPKHFKNWFTSCCYCTS
>NC_019729.1|WP_015174774.1|996936_997086_-|hypothetical-protein
MGVLKESNMWINSLYHNSDRTSNFLDTGFTYAKMLGYFPNFMYNLVEMV

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Crispr_ID: NC_019729_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_13

1071872-1072165

Orphan

Consensus_repeat	Method
CNNTNCCANNNNNNNNTCACAGGCAAGATGCCTGTGCCACAA	CRT

4 spacers

The CRISPR arrays of NC_019729_13

>merge|NC_019729|13|1071872-1072165|CRT
CCTTCCCAAGCTTCAGTCACAGGCAAGATGCCTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAATAATTCTTGTGGGGTGGGCTTCTAGCCCGCCCAAGCTTCAGTCACAGGCAAGATGCCTGGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAA

>NC_019729|13|3|1071872-1072165|CRT
CCTTCCCAAGCTTCAGTCACAGGCAAGATGCCTGTGCCACAA	GGATTTCACAGGCAAGATGC
CTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAA	GGATTTCACAGGCAAGATGC
CTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAA	TAATTCTTGTGGGGTGGGCTTCTAG
CCCGCCCAAGCTTCAGTCACAGGCAAGATGCCTGGCCACAAG	GATTTCACAGGCAAGATGC
CTGTGCCACAAGGATTTCACAGGCAAGATGCCTGTGCCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_041622923.1\|1058997_1061955_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_019729.1\|WP_015174815.1\|1062688_1063267_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_019729.1\|WP_015174816.1\|1063619_1064657_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349893
NC_019729.1\|WP_015174821.1\|1069698_1070148_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|225498
NC_019729.1\|WP_015174832.1\|1086348_1086957_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_019729.1\|WP_015174820.1\|1069210_1069702_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176863
NC_019729.1\|WP_015174824.1\|1073464_1075525_-\|glycogen-debranching-enzyme-family-protein	unknown	unknown	gnl\|CDD\|283786
NC_019729.1\|WP_015174828.1\|1081093_1081639_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_019729.1\|WP_051041476.1\|1071433_1071835_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_019729.1\|WP_015174829.1\|1082052_1083966_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_019729.1\|WP_015174812.1\|1055736_1055994_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174818.1\|1064828_1066715_+\|ATPase	unknown	unknown	gnl\|CDD\|370720
NC_019729.1\|WP_041622925.1\|1077899_1080695_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|225819
NC_019729.1\|WP_015174813.1\|1056042_1057518_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NC_019729.1\|WP_015174823.1\|1072215_1073256_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_019729.1\|WP_015174819.1\|1066790_1069151_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NC_019729.1\|WP_015174827.1\|1080838_1081087_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|370057
NC_019729.1\|WP_015174830.1\|1084164_1084677_+\|DUF4112-domain-containing-protein	unknown	unknown	gnl\|CDD\|379180
NC_019729.1\|WP_015174825.1\|1075841_1077665_+\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NC_019729.1\|WP_150111495.1\|1084771_1086115_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_041622923.1\|1058997_1061955_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	9.91587e-119
NC_019729.1\|WP_015174815.1\|1062688_1063267_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00401121
NC_019729.1\|WP_015174816.1\|1063619_1064657_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349893	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.47897e-65
NC_019729.1\|WP_015174821.1\|1069698_1070148_+\|EVE-domain-containing-protein	gnl\|CDD\|225498	COG2947, COG2947, Uncharacterized conserved protein [Function unknown].	1.01911e-75
NC_019729.1\|WP_015174832.1\|1086348_1086957_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.32213e-18
NC_019729.1\|WP_015174820.1\|1069210_1069702_+\|SRPBCC-family-protein	gnl\|CDD\|176863	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol.	1.20429e-16
NC_019729.1\|WP_015174824.1\|1073464_1075525_-\|glycogen-debranching-enzyme-family-protein	gnl\|CDD\|283786	pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase. This family includes human glycogen branching enzyme AGL. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homolog GDB1 that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).	3.52666e-155
NC_019729.1\|WP_015174828.1\|1081093_1081639_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.45118e-08
NC_019729.1\|WP_051041476.1\|1071433_1071835_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.07271e-08
NC_019729.1\|WP_015174829.1\|1082052_1083966_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_019729.1\|WP_015174827.1\|1080838_1081087_+\|DUF1778-domain-containing-protein	gnl\|CDD\|370057	pfam08681, DUF1778, Protein of unknown function (DUF1778). This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.	7.1378e-06
NC_019729.1\|WP_015174818.1\|1064828_1066715_+\|ATPase	gnl\|CDD\|370720	pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.	0
NC_019729.1\|WP_041622925.1\|1077899_1080695_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|225819	COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism].	0
NC_019729.1\|WP_015174813.1\|1056042_1057518_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NC_019729.1\|WP_015174823.1\|1072215_1073256_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	6.32159e-137
NC_019729.1\|WP_015174819.1\|1066790_1069151_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.97848e-69
NC_019729.1\|WP_015174830.1\|1084164_1084677_+\|DUF4112-domain-containing-protein	gnl\|CDD\|379180	pfam13430, DUF4112, Domain of unknown function (DUF4112). This family has several highly conserved GD sequence-motifs of unknown function. The family is found in bacteria, archaea and fungi.	1.26674e-41
NC_019729.1\|WP_015174825.1\|1075841_1077665_+\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_019729.1\|WP_150111495.1\|1084771_1086115_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	8.15485e-06

>NC_019729.1|WP_051041476.1|1071433_1071835_+|transposase
MTFNTWEKLELTPAARQVVVNACKFFDRQRYQIFCLVVMPDHVHMLMQPLEKSDHKFWSLSSILHSIKSYSSKQIPKVMKHIGTVWQDERHDHIVRDEREFQVFWEYIRQNPVKAGLSVTPEEYPFFWQMYEV
>NC_019729.1|WP_015174821.1|1069698_1070148_+|EVE-domain-containing-protein
MNYWLMKSEPDVYSLADLKGDRTSIWDGVRNYQARNFMREMSRGDLVFFYHSNTKFPGIVGLVRVVETGIADPTQFDVNSEYYDAKSQFDAPRWQTVKVEFVEEFAKLISLDELKQKFSADEILVVRKGNRLSVMPVSESAAQKILKMR
>NC_019729.1|WP_015174820.1|1069210_1069702_+|SRPBCC-family-protein
MLVKTNAVVEIAASPEVVFDFVTSLSNLPKVFRGYGPIPAIIKAEMADGGEMREGGVRRIENSDASVIDEEIITFKKPERQTYRLVRGFKFPISLLIESGGGDWNFTPTAKGTRIDWEFYFMLTSPVFYPLGLLLVQVFMQKAMQQCLDNIQEYLANPSELIV
>NC_019729.1|WP_015174819.1|1066790_1069151_+|ATP-binding-cassette-domain-containing-protein
MTGNIGQLTALSDRPYIVLSNQGEVLQLELKQQQHVLGRDRTRADLVIPEAWRAVSNIHAVLRQIGDNYWIYDGDGQRPSTNGLFVDRTRITPNDGYCLKDGTEIKIGLDPQNQVLLTYFNPLANQVAVPSKQSILLKNRSVLLGRDPNASLQLDAPLVSRRHATIDQDSRGNYILRDYSVNGVFVNGQRVTNSVQLSEGDAIRIGPFTLTYRSGELQMQDSGHQIRLDADSLVIPKRLDNITLAIEPGQFVALVGGSGAGKSTLMRTLLGIEKTTNGAVFLNGDNLRQNFNIYRNQIGYVPQDDIVHADLTVQEVLSYAAKLRLPPDTDVNQVVAKTLEDIEMTHRRKALVKQLSGGQRKRVSIGVELLADPKLFFLDEPTSGLDPGLDKKMMQLLRKLANQGRTVILVTHATANITMCDRIVFMGRGGRLCYFGPPAEALDFFDVKTGDFADIYNELETGETNVQSWAEKFNKSPYYQRYIVNHFSTGNANRKTPSAPSVPKSQSFVKQLVLLAQRYFQLISRDVVNLSLALLTAPIGISLLRLAVRDKDPLIGAPEATLAPLALRVLFVFTCAAIWVGLATSLQEIVKESAIYLRERLVNLGLFAYLGSKFFILSGLAVLQTLLMVGVILSAFKSPEPSFISWPVGASITTFLTLMSCISLGLLVSAIVKNGSQANSALPLLLLPQIIFSGVLFKMEGAASKFSWLMLSRWSVGAYGSLVNVNGMVPAPTALPDGSTLPLPFEPTPVYDPTWENLGLNWGILFVHIFVYLMLTLWLQKRKDIL
>NC_019729.1|WP_015174818.1|1064828_1066715_+|ATPase
MTNKESLRRHLLQLDNRGYKAYKDIQGNYDFSEFRLIIDYVQGDPFASPSKFRVRVPPNIAQIPRELFNSRSREIALRDYLTRQFDKAAHSISSKRGTGKSGLIAVTRLGQEVLERTSAFITPPTPPYQGGEKISISPPYQGGEKISISPPYQGGEKISIFPPYQGGEKISISPPYQGGELGGVELRFIVGLPAGGRSILGRQAAEMLCEDIPQIVSQSLEYANLNAAECRRHVETVEDADWLRQQLAENGLVAFVADGSILPRRTGVDNSPLLNNAVAFQSPPSLKVEFNCPNRGRISGMGIPAGITLIVGGGYHGKSTLLRAIELGVYNRIPGDGREFVVTNPAAVKIRAEDGRSVAGVDISPFINHLPQGRDTAQFYTENASGSTSQAANIIEALEVERMPVLLVDEDTAATNFMIRDRRMQELIAKDKEPITPFIDKVRQLYADYGVSTILVMGGSGDYFDVADTVIALDNFQAYNVTKKAKEIAKNYSISRAAEGGENFGKITQRVPVPASLDPSRGRRNVRVKVRDVDELAFGTEEIDLGAVEQIVDSGQLRAIAAAMVYAKQQYMDGKRTLSEIIDLVMADIDARGMDILSPFPEGDFAMFRGLELAAAINRLRSLSVVAK
>NC_019729.1|WP_015174816.1|1063619_1064657_+|M20/M25/M40-family-metallo-hydrolase
MKQLIWIALFILVAVVAVGWGSDSWQRLSAVPEVWIDRNIHTSENPSPLPLPAEKNAVYLPEIDPSRLWKHVETLAGEREGERSRSFTRDYISKQLQTLGFSAELQQFDRGINVFAERKGTDSNAGAILVAAHYDTVPNSPGADDNATGVAVVLEVARLLGSSATPRTLQVAFFDREEIGLLGSLAFTGSDARLKNLQGAIVLDMVGYACRTPGCQQYPEGLTAQPFLEASGVKSPDKGEFIAVIGDAEHPLLLKSFAESGKADLPAVVALPVPLKGLLTPDVLRSDHAPFWYKGIGAVLVTDTANLRSPHYHQSSDTLATIDRPFFAGSAQIVVNAVAKLLEIQ
>NC_019729.1|WP_015174815.1|1062688_1063267_+|hypothetical-protein
MSQTIPELQKEVRALQAEVTALQESRDKLGLQRSECRVAVSFPKNNTPEAIAEFHQQTAAFGEQWLQQIQEIDRETKNIEKQLQPKQALLNYKQGELEKLLAGEHWQEVENKVQTGEKRLQAQARRINQAAAQLEVEIQALKALYDQLNPSYSEWFQQPTQIVKFSATTIPYAVPSSSGLILENKEIEWEKK
>NC_019729.1|WP_041622923.1|1058997_1061955_-|EAL-domain-containing-protein
MRLIKPKSETDNDNLPKGEKMLYPKKEQDIWHTIAQMTQDWQQTAEYALDICEEMNVSIIATTPGGHILSLNQATCQLLGYSKQELLGKPIAGLFKKSESTAPELELASLTAEGAVRNVEKVYLSKHRKKIIVQLSISIIRDGQGKVRGKLYIAQDITDSKRAERNLRRSEKKFRQLIETVNAVAFIYHRRQLRYANAQTEALTGYTREELLALDLYDLIHRDFIEIVKKWGKSSHARSTAGSKYELIIVTKTGEMRWIEATVDIIKFEKKASILITAFDISDRKLAELEIETSLSLLQATIESTADGILAVDSAGKVVSFNRKFAEMWQLPDLQVDSRDNNQILGFGINQLKYPEIFLNRTKELSDRPTAESYDIIEFTDGRIFERYSLPQRTGGKITGRVFSFRDVTKRVQSEEKLRKSEERFHLLTRATNDAVWDFDLLKNEYWLSEEFEKVFGYKLNETQTIELESWWLNIHPEERERVMLSFNKTMNSDAECWSEEYSFHRADGGYVFVLDRGYIIRNESGKAVRAIGTMMDITQRKQAEEIIRYQAVYDQLTGLPNRILFNERLLASLKQAQKNQKMLAVMFLDLDRFKKINDTLGHAAGDRLLEGFAARISDTLRSTDTVARWGGDEFTILLPDINCLEDAVKTAQRILNNLKPAFKLEGQPFHVSSSIGIALYPDDGEDAENLVKNADTALYRAKEMGRNNYQLYTSTINPQGSRLLTIEHRLHEALEQGEFEVFYQPKVNLTTWKIQGMEALLRWQHPQLGLVTPATFIPIAEENGLIVAIGEWVLQTACTQNKAWQDALQPDLRVAVNVSARQFQQFNLLEMVANCLEKSGLAPKYLELEITETTAMQDVDYTTKVLTELQNMGVQIALDDFGTGYCSLNYLKKFPLNILKIDKSFVSGMTTDPCERAIAKAVATLGRDLNLSVVAEGVETKEQLECLRSLHCQEIQGHYFSPALSAGEASKLLVNSMLRKVQIA
>NC_019729.1|WP_015174813.1|1056042_1057518_-|glycogen-synthase-GlgA
MYIVQIASECAPVIKAGGLGDVVYGLSRELQNSGHCVEIILPKYDCMRYDHIWGLHEAYRDLAVPWYGGEILCDVLCGWVHGQLCFFIEPRSQDRFFNRGCYYGCDDDNMRFAFFSKAALEFLLRSNKRPDVIHCHDWQTGLVPVLLFEIYKYNWMENQRVCYTIHNFKHQGMGGSDILNATGLNREDYYFEYDRLRDNFNPFAINFMKGGIVYSNFVTTVSPHHAWEAHHGEFGYGLGHTLHLYQDKFRGVLNGIDYDVWNPESDRYLPAHYTQDDLAGKAKTKKALRDRLLLRDADKPIITFIGRLDDQKGVHLVHHAIYYSLSKGAQFVLLGSATEAGINAHFQHERYFLNDNPDCHLELGFNEELSHLIYAGGDIIVVPSNYEPCGLTQMIGLRYGTVPVVRGVGGLVNTVFDRDYDTRHLPEERNGYVFYQTDYYALESALDRAIGLWYDYHDEFEKLMLQGMNCDNSWKYPAKDYVEIYELIRHK
>NC_019729.1|WP_015174812.1|1055736_1055994_+|hypothetical-protein
MSDSVTIFRAAALAVRNPVSASLNRLFFSEQTLLWPAEEVNLKRFLKQSRTPKKKATAISQAIRVTAIYQLPEFATRLNSHQDAG
>NC_019729.1|WP_015174823.1|1072215_1073256_-|glucokinase
MALLLAGDIGGTKTILRLVERTVNGEMNPLYEFRYPSGEFPDLVPMVQQFLTEAGTKLNLTPQPEKACFAIAGPVVNNTAKLTNLPWMLDAKRLEQELGISRVSLINDFVAVGYGVWGLDAKDLHILQVGKPRQHDPIAVIGAGTGLGNCFAIPEANGIKVFSSEGGHGDFAPRSELEFELLKYLLAKHDIQRISIERVVSGQGIVSIYQFLRDRKFAPESPEVGEVIKQWESEIGKSEKSVDPGATIAQAALKKCDRLSEQTMQMFVEAYGAVAGNLAVTLLPYGGLYVAGGIAAKILPLMLEGGFMRAFTHKGRMDSLLEMMPVRLVLNDNVGLIGAAVCAAGL
>NC_019729.1|WP_015174824.1|1073464_1075525_-|glycogen-debranching-enzyme-family-protein
MVMAFGREICCNLDSAESREWLVTNGIGGYASGTIANLLTRRYHGLLVAALKPPLGRTLMLAKLDETAVYRDRPYPLYTNRWADATMEPHGYKYVESFHLEGTTPVWRFALADAILEKRIWMQQGANTTYIQYRTRRASQPIALAVKALVNYRDYHHTTRAGDWQMSLETLESGVCVTAFPSSAPLYLLTDAEPEAQFRVSTPLYNWYYGFDLAAEKRRGLDCCEDHLHAATFHMTIAPGSSLTLIASTEKNLEINGGKALEGRRTYDRQLLQNWSKVSESPDWIDRLVLAADQFIVSRPLPQEPEGKTIIAGYPWFSDWGRDTTIALPGLTICTGRWEIARSILRTFARYVDLGMLPNRFPDAGDAPEYNTADATLWYFEAIRAYIDATGDDRLLSELWPTLCEIVDRHVQGTRYNIRVDPDDGLIYAGEKGVQLTWMDAKIGDWVVTPRIGKPIELSALWYNAIQAMASFARKLGKPHNEYQQLGDRTAAGFPRFWNASTGYCYDVLDGPDGHDSSLRPNQIFAVSLPLDSIPPHWANSLSAGRRQETRYTPLLTPIQQRGVVDACAEGLLTSVGLRSLSPQHPQYRGAYGGDQLQRDGAYHQGTAWGWLIGPFVLAHLHVYKNPAQAIEFLEPMAHHIRAGGVGSLGEIFEGDAPHSPRGCTAQAWTVAEVLRAWLAINTVGV
>NC_019729.1|WP_015174825.1|1075841_1077665_+|malto-oligosyltrehalose-trehalohydrolase
MKIGANYLGNNQCEFTVWAPTLKQIAVQIVSPNKRLIPLQQSAEGYWQTTATDIEPGTLYTYQIEGKTDRPDPASKYQPQGVHAPSQVIDANNFTWTDTSWQGVPLAEMIIYELHVGTFTQAGTFEAIIPQLKQLKELGINAIEIMPVAQFPGDRNWGYDGVYPYAVQNSYGGPEGFKTLVNACHEHGISVILDVVYNHLGPEGNYLRDFGPYFTSKYGSIWGDPLNFDDAYSDGVRNYFIENALYWFRDYHIDALRLDAIQAIFEVGARPFLQELSDATADISQELGRQLYLIAESDLNDVRTVRPKELGGFGLDAQWCDDFHHALHALLTGEDDRYYQDFGKCEHLEKAFKESFVYSGQYAPHRKRKHGNSVKDEPGHKFLVFSQTHDQIGNRILGDRLSKIVDFEGLKLAAGTVLISPYIPFFFMGEEYGEEAPFFYFVSHSDENLIEAIRKDKQQEFKIFEGRGEFHDPQSPETFDKCKLNWEKQTEGKHKILWEWHQHLIQLRRTIPALKKLDKNSLEVSSIEAEKILFLRRWTDDSQIFCILNFNRQEVAFTAALPQGNGHKILDSADEKWMGSGSSLPEKINSEQKLTVKPQSFALYELQ
>NC_019729.1|WP_041622925.1|1077899_1080695_+|malto-oligosyltrehalose-synthase
MRIPTTTYRIQFHGGFNFEAAKQILSYLEDLGITDLYASPIFKARKGSSHGYDVVDSNQLNPDLGTSENFEGLTYEIKKRNMGWLQDIVPNHMAYDTQNLLLLDVLEHGPDSDYFDYFDIEWNHAYEHLRGRVLAPLLGNFYGECLENGEIQLKYSEIGLTINYYSLQLPVRIESYAKFISHNLGHLARELGRRHPDFIKFLGILYLIKNTPSETKGKTRYDQIAFVKGLLWELYNQNPLVQEFIDENIKVFNGEKGNPESFNLLDDLLSEQFYRLAFWKVGAEEINYRRFFTVNELISVKVEEIKVFHKNHALIFDMVDEGKFTGLRIDHIDGLYDPTEYLKRLREKVGDTYITVEKILEHEEDLPSYWPIEGTSGYDFLNYVNGVFCRCDREQQFSEIYQRFTRLNVPYEQLFLDKKGLIVEKNLAGDVDNLAQLLKNISGQSRQGNDFTRPGLEKALAAVLTIFPVYRTYINQDGLRESDRTYVKYAIAHAKQQVPRLLKELNFIETVLLLEEEETLTPEQKEQRRHFVMKLQQLTGPLMAKGVEDTLLYVYYRLLSLNEVGGNPSQFGVSLVDFHEFNKQQQVAWPHKMNATATHDTKRGEDVRARINVLSEIPDEWEQQVRSWREVNSSKKVNFVNRMVPDTNDEYFLYQTLLGSFPFEGIENTDYVARLKDYVIKAVREAKVYTAWLRPDNDYEAGFMTFVDSVLEPSEQNQFLNKFIPFCKKVANYGIFNSLSQTLLKIAAPGVPDIYQGTEFWDLSHVDPDNRRPVDFDRRIEVLREIKEQAQTDILQLVEDLIATREDARIKLFLTARALEARKKYLQVFQSGDYLPLQAVGTFKDNVVAFARSFGETTVIVIAPRFLTGIVKPEEMPIGKQVWKDTNLKLSEQMPSVWKDAITNQAVESNGTLAIGEALSYFPAALLIGKK
>NC_019729.1|WP_015174827.1|1080838_1081087_+|DUF1778-domain-containing-protein
MRSLVKTETSTETRLSWWAYLFVLDEFIAEADATINGPAALGNPVLKLSERDWDFLLDMMLDPPPPNEALIKLFQDYGNSNK
>NC_019729.1|WP_015174828.1|1081093_1081639_+|GNAT-family-N-acetyltransferase
MDFLIAPIDRIERSTSSLKKEPFNSGNPELDRYFKQYAQKNDRDGIAKTFVAFSSGGSQIIGYYSCCAGVVEREDLPADLRQRLPRYPIPAILIAKLAVDRSMQGRGLGKQLLLHALARAIDVSEIVGVYGVRVDAIDEKAKEFYQKFGFLECQETALSLFMLMNTIKQAANVKPSDPTAT
>NC_019729.1|WP_015174829.1|1082052_1083966_+|molecular-chaperone-DnaK
MGKVVGIDLGTTNSCVAVMEGGKPTVIANAEGGRTTPSVVAYAKNGDQLVGQIAKRQAVMNAENTFYSVKRFIGRRVDEVAHETTEVSYKVLKVGNSLKLDCPARGKQFAPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVLRIINEPTAAALAYGLDKKSNETILVFDLGGGTFDVSILEVGDGVFEVLATSGDTHLGGDDFDKKIVDYIANEFQRAEGIDLRKDKQALQRLTEAAEKAKIELSSVTQAEINLPFITATQDGPKHLDTTLTRGKFEELCSDLIDRSRIPVENAIRDAKLDKSAINEVVLVGGSTRIPAVQELVKKLLGKEPNQTVNPDEVVAVGAAIQAGVLSGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSETFSTAVDGQTNVEIHVLQGEREMANDNKDLGTFRLDGVPPAPRGVPQIEVTFDIDANGILNVAAKDKGTGKEQSISITGASTLPSNEVDKMVKEAEANAAADKERREKIDRKNQADSQAYQIEKQLAELGDKVPPADKTKIEGLLKNLREAIASEDDDRIKTLTTELQQAFYAVSSNLYQQAGGPTDGPGGPGGPGGYGDGGPTGGGDDVIDADFTEGK
>NC_019729.1|WP_015174830.1|1084164_1084677_+|DUF4112-domain-containing-protein
MSRYPIQNSSPNTPSPSHVASLRRLRRISHLLDNAIPIPGTKYRIGLDPILGLIPGGGDLISSIFAGYVVFKSAQMGVPQETLVKMAANIVFDTVAGTVPVAGDLLDVAWKANVKNIELLDAHLGSPEQGKKADWLFVAALLLGLILIVGGVIFLSVMLFGWLFQVITGR
>NC_019729.1|WP_150111495.1|1084771_1086115_+|sulfotransferase
MSITMTSQYLDYAKAVREEIFQHINQPLWYQKSIQDVSKVVIILSSPRSGSSLLFHLLSHTEQLLSLNGEHTTYYKLNGYSFPFRNFQSDFLENPKISKSDLKNFSRDFLSSVGVGSEQVISRPEELKNFTQLMALRLPMQWPQLGMSAEQWLGYIAEACRQYFYEHSTWNSSIFLIDILKRLLIYYPGFNPFYYDIKPSLLKSHFPNISYPKAPPNPHFCIEEPPFIVLKPRRCPTSEEISSKPWLLKASIDAFRLPLLKQLFPNAEFKIIHLTRLPATSINGLYDGWSHRGFFSHNLEGIANLAIPGYSDLYEWGKHWWNYELPPQWKKVINQPLEYVCCFQWSSSHQVILESLAQEKANNILRVKFEDIISSSQQRLLTIGRILEFIGIGEDNELKKVVEEMQPVMCSVPADETRWLNRKSLILPVINQKSIRQLTNELGYENR
>NC_019729.1|WP_015174832.1|1086348_1086957_+|PadR-family-transcriptional-regulator
MLELSALGLLQLQPMHGYRLKQKLELFMSSCISVNYGAIYPLLKRLEERGQIATIAEEAGDAGCPRKIYAITPKGRELWRQKMLEHPQESWVNSGSRFQIKFFFFGDLEPAERLKLLEHRLRACYTRQDYIESLKSEYPLTDDYQFASRDRCKSVLASEIEWLTEQLAKEKRAIAGVRDSPTSAESADSKGKSFQLTHSGES

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Crispr_ID: NC_019729_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_14

1087305-1087416

Orphan

Consensus_repeat	Method
GATGCAGACAGCGATCGACCGCAGGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_14

>merge|NC_019729|14|1087305-1087416|CRISPRCasFinder
GATGCAGACAGCGATCGACCGCAGGATTCTGCTACCGTTGTCGATCGCCCCGAAGCTGTTGCTAAACCGGAACTGCACCCAACCGATGCAGACAGCGATCGACCGCAGGATT

>NC_019729|14|13|1087305-1087416|CRISPRCasFinder
GATGCAGACAGCGATCGACCGCAGGATT	CTGCTACCGTTGTCGATCGCCCCGAAGCTGTTGCTAAACCGGAACTGCACCCAACC
GATGCAGACAGCGATCGACCGCAGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174837.1\|1094504_1095323_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_019729.1\|WP_015174836.1\|1093880_1094129_-\|transporter-suffix-domain-containing-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174838.1\|1095817_1096510_+\|aldehyde-oxygenase-(deformylating)	unknown	unknown	gnl\|CDD\|237879
NC_019729.1\|WP_015174835.1\|1092791_1093820_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174840.1\|1097948_1098929_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NC_019729.1\|WP_015174832.1\|1086348_1086957_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_019729.1\|WP_015174839.1\|1096666_1097692_+\|long-chain-acyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|184944
NC_019729.1\|WP_015174824.1\|1073464_1075525_-\|glycogen-debranching-enzyme-family-protein	unknown	unknown	gnl\|CDD\|283786
NC_019729.1\|WP_015174828.1\|1081093_1081639_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_019729.1\|WP_015174841.1\|1099173_1099899_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180984
NC_019729.1\|WP_015174829.1\|1082052_1083966_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_019729.1\|WP_015174834.1\|1089290_1092497_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_019729.1\|WP_015174842.1\|1100002_1100737_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_019729.1\|WP_041622925.1\|1077899_1080695_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|225819
NC_019729.1\|WP_015174823.1\|1072215_1073256_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_019729.1\|WP_015174827.1\|1080838_1081087_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|370057
NC_019729.1\|WP_015174830.1\|1084164_1084677_+\|DUF4112-domain-containing-protein	unknown	unknown	gnl\|CDD\|379180
NC_019729.1\|WP_015174825.1\|1075841_1077665_+\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NC_019729.1\|WP_150111495.1\|1084771_1086115_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NC_019729.1\|WP_150111496.1\|1095555_1095753_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174837.1\|1094504_1095323_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	6.69877e-78
NC_019729.1\|WP_015174838.1\|1095817_1096510_+\|aldehyde-oxygenase-(deformylating)	gnl\|CDD\|237879	PRK14983, PRK14983, aldehyde decarbonylase; Provisional.	3.27282e-164
NC_019729.1\|WP_015174842.1\|1100002_1100737_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.89819e-122
NC_019729.1\|WP_015174840.1\|1097948_1098929_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NC_019729.1\|WP_015174832.1\|1086348_1086957_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.32213e-18
NC_019729.1\|WP_015174839.1\|1096666_1097692_+\|long-chain-acyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|184944	PRK14982, PRK14982, acyl-ACP reductase; Provisional.	0
NC_019729.1\|WP_015174824.1\|1073464_1075525_-\|glycogen-debranching-enzyme-family-protein	gnl\|CDD\|283786	pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase. This family includes human glycogen branching enzyme AGL. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homolog GDB1 that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).	3.52666e-155
NC_019729.1\|WP_015174828.1\|1081093_1081639_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.45118e-08
NC_019729.1\|WP_015174841.1\|1099173_1099899_+\|SDR-family-oxidoreductase	gnl\|CDD\|180984	PRK07454, PRK07454, SDR family oxidoreductase.	1.5933e-133
NC_019729.1\|WP_015174829.1\|1082052_1083966_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_019729.1\|WP_015174834.1\|1089290_1092497_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NC_019729.1\|WP_041622925.1\|1077899_1080695_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|225819	COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism].	0
NC_019729.1\|WP_015174823.1\|1072215_1073256_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	6.32159e-137
NC_019729.1\|WP_015174827.1\|1080838_1081087_+\|DUF1778-domain-containing-protein	gnl\|CDD\|370057	pfam08681, DUF1778, Protein of unknown function (DUF1778). This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.	7.1378e-06
NC_019729.1\|WP_015174830.1\|1084164_1084677_+\|DUF4112-domain-containing-protein	gnl\|CDD\|379180	pfam13430, DUF4112, Domain of unknown function (DUF4112). This family has several highly conserved GD sequence-motifs of unknown function. The family is found in bacteria, archaea and fungi.	1.26674e-41
NC_019729.1\|WP_015174825.1\|1075841_1077665_+\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_019729.1\|WP_150111495.1\|1084771_1086115_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	8.15485e-06

>NC_019729.1|WP_015174832.1|1086348_1086957_+|PadR-family-transcriptional-regulator
MLELSALGLLQLQPMHGYRLKQKLELFMSSCISVNYGAIYPLLKRLEERGQIATIAEEAGDAGCPRKIYAITPKGRELWRQKMLEHPQESWVNSGSRFQIKFFFFGDLEPAERLKLLEHRLRACYTRQDYIESLKSEYPLTDDYQFASRDRCKSVLASEIEWLTEQLAKEKRAIAGVRDSPTSAESADSKGKSFQLTHSGES
>NC_019729.1|WP_150111495.1|1084771_1086115_+|sulfotransferase
MSITMTSQYLDYAKAVREEIFQHINQPLWYQKSIQDVSKVVIILSSPRSGSSLLFHLLSHTEQLLSLNGEHTTYYKLNGYSFPFRNFQSDFLENPKISKSDLKNFSRDFLSSVGVGSEQVISRPEELKNFTQLMALRLPMQWPQLGMSAEQWLGYIAEACRQYFYEHSTWNSSIFLIDILKRLLIYYPGFNPFYYDIKPSLLKSHFPNISYPKAPPNPHFCIEEPPFIVLKPRRCPTSEEISSKPWLLKASIDAFRLPLLKQLFPNAEFKIIHLTRLPATSINGLYDGWSHRGFFSHNLEGIANLAIPGYSDLYEWGKHWWNYELPPQWKKVINQPLEYVCCFQWSSSHQVILESLAQEKANNILRVKFEDIISSSQQRLLTIGRILEFIGIGEDNELKKVVEEMQPVMCSVPADETRWLNRKSLILPVINQKSIRQLTNELGYENR
>NC_019729.1|WP_015174830.1|1084164_1084677_+|DUF4112-domain-containing-protein
MSRYPIQNSSPNTPSPSHVASLRRLRRISHLLDNAIPIPGTKYRIGLDPILGLIPGGGDLISSIFAGYVVFKSAQMGVPQETLVKMAANIVFDTVAGTVPVAGDLLDVAWKANVKNIELLDAHLGSPEQGKKADWLFVAALLLGLILIVGGVIFLSVMLFGWLFQVITGR
>NC_019729.1|WP_015174829.1|1082052_1083966_+|molecular-chaperone-DnaK
MGKVVGIDLGTTNSCVAVMEGGKPTVIANAEGGRTTPSVVAYAKNGDQLVGQIAKRQAVMNAENTFYSVKRFIGRRVDEVAHETTEVSYKVLKVGNSLKLDCPARGKQFAPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVLRIINEPTAAALAYGLDKKSNETILVFDLGGGTFDVSILEVGDGVFEVLATSGDTHLGGDDFDKKIVDYIANEFQRAEGIDLRKDKQALQRLTEAAEKAKIELSSVTQAEINLPFITATQDGPKHLDTTLTRGKFEELCSDLIDRSRIPVENAIRDAKLDKSAINEVVLVGGSTRIPAVQELVKKLLGKEPNQTVNPDEVVAVGAAIQAGVLSGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSETFSTAVDGQTNVEIHVLQGEREMANDNKDLGTFRLDGVPPAPRGVPQIEVTFDIDANGILNVAAKDKGTGKEQSISITGASTLPSNEVDKMVKEAEANAAADKERREKIDRKNQADSQAYQIEKQLAELGDKVPPADKTKIEGLLKNLREAIASEDDDRIKTLTTELQQAFYAVSSNLYQQAGGPTDGPGGPGGPGGYGDGGPTGGGDDVIDADFTEGK
>NC_019729.1|WP_015174828.1|1081093_1081639_+|GNAT-family-N-acetyltransferase
MDFLIAPIDRIERSTSSLKKEPFNSGNPELDRYFKQYAQKNDRDGIAKTFVAFSSGGSQIIGYYSCCAGVVEREDLPADLRQRLPRYPIPAILIAKLAVDRSMQGRGLGKQLLLHALARAIDVSEIVGVYGVRVDAIDEKAKEFYQKFGFLECQETALSLFMLMNTIKQAANVKPSDPTAT
>NC_019729.1|WP_015174827.1|1080838_1081087_+|DUF1778-domain-containing-protein
MRSLVKTETSTETRLSWWAYLFVLDEFIAEADATINGPAALGNPVLKLSERDWDFLLDMMLDPPPPNEALIKLFQDYGNSNK
>NC_019729.1|WP_041622925.1|1077899_1080695_+|malto-oligosyltrehalose-synthase
MRIPTTTYRIQFHGGFNFEAAKQILSYLEDLGITDLYASPIFKARKGSSHGYDVVDSNQLNPDLGTSENFEGLTYEIKKRNMGWLQDIVPNHMAYDTQNLLLLDVLEHGPDSDYFDYFDIEWNHAYEHLRGRVLAPLLGNFYGECLENGEIQLKYSEIGLTINYYSLQLPVRIESYAKFISHNLGHLARELGRRHPDFIKFLGILYLIKNTPSETKGKTRYDQIAFVKGLLWELYNQNPLVQEFIDENIKVFNGEKGNPESFNLLDDLLSEQFYRLAFWKVGAEEINYRRFFTVNELISVKVEEIKVFHKNHALIFDMVDEGKFTGLRIDHIDGLYDPTEYLKRLREKVGDTYITVEKILEHEEDLPSYWPIEGTSGYDFLNYVNGVFCRCDREQQFSEIYQRFTRLNVPYEQLFLDKKGLIVEKNLAGDVDNLAQLLKNISGQSRQGNDFTRPGLEKALAAVLTIFPVYRTYINQDGLRESDRTYVKYAIAHAKQQVPRLLKELNFIETVLLLEEEETLTPEQKEQRRHFVMKLQQLTGPLMAKGVEDTLLYVYYRLLSLNEVGGNPSQFGVSLVDFHEFNKQQQVAWPHKMNATATHDTKRGEDVRARINVLSEIPDEWEQQVRSWREVNSSKKVNFVNRMVPDTNDEYFLYQTLLGSFPFEGIENTDYVARLKDYVIKAVREAKVYTAWLRPDNDYEAGFMTFVDSVLEPSEQNQFLNKFIPFCKKVANYGIFNSLSQTLLKIAAPGVPDIYQGTEFWDLSHVDPDNRRPVDFDRRIEVLREIKEQAQTDILQLVEDLIATREDARIKLFLTARALEARKKYLQVFQSGDYLPLQAVGTFKDNVVAFARSFGETTVIVIAPRFLTGIVKPEEMPIGKQVWKDTNLKLSEQMPSVWKDAITNQAVESNGTLAIGEALSYFPAALLIGKK
>NC_019729.1|WP_015174825.1|1075841_1077665_+|malto-oligosyltrehalose-trehalohydrolase
MKIGANYLGNNQCEFTVWAPTLKQIAVQIVSPNKRLIPLQQSAEGYWQTTATDIEPGTLYTYQIEGKTDRPDPASKYQPQGVHAPSQVIDANNFTWTDTSWQGVPLAEMIIYELHVGTFTQAGTFEAIIPQLKQLKELGINAIEIMPVAQFPGDRNWGYDGVYPYAVQNSYGGPEGFKTLVNACHEHGISVILDVVYNHLGPEGNYLRDFGPYFTSKYGSIWGDPLNFDDAYSDGVRNYFIENALYWFRDYHIDALRLDAIQAIFEVGARPFLQELSDATADISQELGRQLYLIAESDLNDVRTVRPKELGGFGLDAQWCDDFHHALHALLTGEDDRYYQDFGKCEHLEKAFKESFVYSGQYAPHRKRKHGNSVKDEPGHKFLVFSQTHDQIGNRILGDRLSKIVDFEGLKLAAGTVLISPYIPFFFMGEEYGEEAPFFYFVSHSDENLIEAIRKDKQQEFKIFEGRGEFHDPQSPETFDKCKLNWEKQTEGKHKILWEWHQHLIQLRRTIPALKKLDKNSLEVSSIEAEKILFLRRWTDDSQIFCILNFNRQEVAFTAALPQGNGHKILDSADEKWMGSGSSLPEKINSEQKLTVKPQSFALYELQ
>NC_019729.1|WP_015174824.1|1073464_1075525_-|glycogen-debranching-enzyme-family-protein
MVMAFGREICCNLDSAESREWLVTNGIGGYASGTIANLLTRRYHGLLVAALKPPLGRTLMLAKLDETAVYRDRPYPLYTNRWADATMEPHGYKYVESFHLEGTTPVWRFALADAILEKRIWMQQGANTTYIQYRTRRASQPIALAVKALVNYRDYHHTTRAGDWQMSLETLESGVCVTAFPSSAPLYLLTDAEPEAQFRVSTPLYNWYYGFDLAAEKRRGLDCCEDHLHAATFHMTIAPGSSLTLIASTEKNLEINGGKALEGRRTYDRQLLQNWSKVSESPDWIDRLVLAADQFIVSRPLPQEPEGKTIIAGYPWFSDWGRDTTIALPGLTICTGRWEIARSILRTFARYVDLGMLPNRFPDAGDAPEYNTADATLWYFEAIRAYIDATGDDRLLSELWPTLCEIVDRHVQGTRYNIRVDPDDGLIYAGEKGVQLTWMDAKIGDWVVTPRIGKPIELSALWYNAIQAMASFARKLGKPHNEYQQLGDRTAAGFPRFWNASTGYCYDVLDGPDGHDSSLRPNQIFAVSLPLDSIPPHWANSLSAGRRQETRYTPLLTPIQQRGVVDACAEGLLTSVGLRSLSPQHPQYRGAYGGDQLQRDGAYHQGTAWGWLIGPFVLAHLHVYKNPAQAIEFLEPMAHHIRAGGVGSLGEIFEGDAPHSPRGCTAQAWTVAEVLRAWLAINTVGV
>NC_019729.1|WP_015174823.1|1072215_1073256_-|glucokinase
MALLLAGDIGGTKTILRLVERTVNGEMNPLYEFRYPSGEFPDLVPMVQQFLTEAGTKLNLTPQPEKACFAIAGPVVNNTAKLTNLPWMLDAKRLEQELGISRVSLINDFVAVGYGVWGLDAKDLHILQVGKPRQHDPIAVIGAGTGLGNCFAIPEANGIKVFSSEGGHGDFAPRSELEFELLKYLLAKHDIQRISIERVVSGQGIVSIYQFLRDRKFAPESPEVGEVIKQWESEIGKSEKSVDPGATIAQAALKKCDRLSEQTMQMFVEAYGAVAGNLAVTLLPYGGLYVAGGIAAKILPLMLEGGFMRAFTHKGRMDSLLEMMPVRLVLNDNVGLIGAAVCAAGL
>NC_019729.1|WP_015174834.1|1089290_1092497_+|multidrug-efflux-RND-transporter-permease-subunit
MFADFFIKRPVFASVCALIIILVGAISIPTLPIERFPDISPTQINVTANYSGASAEIVENAVTNILERQINGVEGLKYLTSSSSNDGTSTITATFDSSRNKDIAGVDVQNRVAVAQPQLPDAVQRTGVRVTKQSTSLLLAIGLFTENKEYDTIFLSNYADLYLADALKRVKGVGDVRIFGERRYAMRLWIDPNKLAARRLTMQDVTRALNEQNLQVGAGRVGQEPAPQGQMYQIDLRAESRLKEPAEFEELVLKTETNGTLVKLKDVGRAELGAENYSSFLRFRGNDAVGLGIYQLPGSNALNVAHAVKTEMEKLAVAFPPGLQHRVALDTTLFVEESMAEVVKTLFEAVLLVVIVIFVFLQDWRTTIIPTVTIPISLIGTFAFIKVFGFTINSLSLFGLTLATGLVVDDAIIVVENIDRLIRQGMNARQAAFESMRELFSAVIATSLVLMAVFVPVAFFPGTTGALYKQFALTIAFSVALSTFIAITLTPSLSAILLRRGPKFGGPLGWVFDRVNEVLNWVQRQYRKSLIFLTGIKTIVTLAFIASLGVTAWLYLSVPTAFIPEEDQGYFLTIIQGPQGVSLQYTQKVMDRVEQEILKLPEVVGTFSVGGFGFSGSTSNQGIIFTTLKGWKERHGEDQTVQAIIGKLRGKFFSIPEARIFPVNPPAIQGLGQFGGFQFQLQDRKGNSGLDALVQTMGEILKQANQTPGLQAVFSTFAANTPQLIVEVDRNRAKALDIPINDVFSTLQTALGAQYVNDFNLQQRNYRVYVQADKQFRDNPEDIGKLYVRSGKNEMIPLSNLVKITPVVGAQTVNHYNLYRSIEITGSPAPGASSGQALKSMEKVSAQVLPSGFGYEWSGSSLEEIESGGQAPIIFGLGLIFVFLVLAAQYENYVDPFIILLSVPLAILGALLAQSLRGLANDVYCQIGLVMLIGLASKNAILIVEFANQLRERGYPIAKAAVEASQERLRPILMTSLSFILGIAPLVNPEGAGAASRRSLGNAIAGGMVVSTVLSLFIVPVLYVVVVSARDRFKKRDRVDNLPDEDGTILNGKTAPHEEIERDKVSPL
>NC_019729.1|WP_015174835.1|1092791_1093820_+|hypothetical-protein
MAEVPLNPAELAEALNGFTDINFQLPDPEDEQLPDFDFENQVDNAWKVCDRFDLQTDIWRGRILRTVRDREKKGGEGRGTGFLNWLKEREIGKSQAYSLIELANSADTLIQQGDLDPNSIRNFSKRAFVETAKASPEVQQMVTDAAASGDRITRREVKQLSDEWMAMNSDLLPEEVKEKASTGSLPSRYLAPLVKEMEKLSPSHQSEIQKEVAENPDVDTVKQLTSDAKNLSKYLDAAAQVQALNQSHLDMEMALEESLRVGCLGTTADVVKQAAQLEQTVVKLYTIWKRLGSLADRLYVDTGASTPNLRLLLGCLDTLSGEKIEVDFGDGERSIRLQIFSE
>NC_019729.1|WP_015174836.1|1093880_1094129_-|transporter-suffix-domain-containing-protein
MQKLGLFLFVLSFLPWLAVLFVVPFLPLDITQKTTLSVVLAVGAEVCFWISVVLLGKEVVTKYRRYLHPRYLWKKLRNFNRR
>NC_019729.1|WP_015174837.1|1094504_1095323_-|carbohydrate-ABC-transporter-permease
MGKSFDRSQALELLSFILLLAGAALVLLPLAAVFLVSLSPSGVGVNATELTFANYQEAWRRGNFLLAFVNSTLVAIAVTAFQVVTSALAGYALARLKFRGRQAIVLGVLATLVIPFQLLVVPIFLVLKWGHLLNTYGALILPTAANGFGIFLLRQYFMTVPVELEEAAMLDGANRWQVLWQVMFPLARPALVTLFLFTFIGEWNDLFKPLVFTTRPELRTVQLVLAEFQEQFTSSWQLLMAAVVIGTVPVVLLFLAGQRQFIRGIAATGIKN
>NC_019729.1|WP_150111496.1|1095555_1095753_-|hypothetical-protein
MTVHFTYFERTPSKSQIIAEDAFDKELFFDVPGKTGVLSAFAGLLPSNTPERLSLECYLFTNYLN
>NC_019729.1|WP_015174838.1|1095817_1096510_+|aldehyde-oxygenase-(deformylating)
MPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKEFFSELHRNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA
>NC_019729.1|WP_015174839.1|1096666_1097692_+|long-chain-acyl-[acyl-carrier-protein]-reductase
MFGLIGHLTSLEHAQSVANELGYPEYGDQGLDFWCSAPPQIVDHITVTSITGQKIEGRYVESCFLPEMLATRRIKAATRKILNAMAHAQKNGINITALGGFSSIIFETFNLQQIKQIRNLKLEFERFTTGNTHTAYILCRQVEEAAPKLGIELSKATVAVCGATGDIGSAVCRWLNVKTNVAELLLIARDKERLQDLQSELGRGKIMDLEEALPQADIVVWVASMPKGVEIDPKTLKQPCLLIDGGYPKNLATQVQHPGIYVLNGGIVEHSLDIEWKIMKIVNMDVPGRQLFACFAESMLLEFEKLYTNFSWGRNQITVEKMEQIGLISVKHGFRPLLMSF
>NC_019729.1|WP_015174840.1|1097948_1098929_+|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MPNPDRKPLLLDFEKPLAELETRIHQIRELAEENSVDVTDEIRKLEARSAQLRQEIFSSLSPMQRLQLARHPRRPSTLDYIQAISDEWIELHGDRRGGDDPALVGGIARIDGRPTVIIGHQKGRDTKDNIARNFGMAAPGGYRKALRLMEHADRFGMPIFTFIDTPGAWAGLEAEQLGQGEAIACNLREMFRLDVPIICTVIGEGGSGGALGIGVGERLLMLEHSVYTVATPEACAAILWKDSAKANLAAEALKITSWDLKNLGVLDQIVPEPIGGAHSNPLKAASILKQALLENLAELTQLTGQQRRELRYQKFRHIGVFTEIAA
>NC_019729.1|WP_015174841.1|1099173_1099899_+|SDR-family-oxidoreductase
MNHPTTKQALITGASSGIGKATALAFAAEGINLALVSRESENLEAVAAAAREVGVKAEAYPLDLAKIEQVQSSISAIAAQFGPIDILVNSAGMGYTGSLTETPLAEWQSVLDLNLTSVWQCILGVLPSMRDRGSGIIINVSSIAGSQTFPNWGAYCVSKFGLMALSKTLAAEERARGIRVTAICPGSVNTPMWDTDTVDADFDRTAMLTPEIVAQSILHAVQLPASAVIEEITLMSNAGVL
>NC_019729.1|WP_015174842.1|1100002_1100737_+|GTP-cyclohydrolase-I-FolE
MTIASSTDSNGSNSLSTDSMKLSETADNNTPRIPTRPDRNSSHGQESSVPIASEVGLEEMMEAVRTMLLGVGEDPEREGLLKTPKRVAEAMRFLTSGYSQSLEELLNGAIFDEGHNEMVLVRDISVFSMCEHHMLPFMGRVHIAYIPNQKVVGLSKLARIAEMYSRRLQVQERLTRQIAEAVQTILEPKGVAVVMEASHMCMTMRGVQKPGAWTVTSAMLGVFQEEQKTREEFLNLIRHQPTFF

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Crispr_ID: NC_019729_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_16

1286929-1287037

Orphan

I-D,II-B

Consensus_repeat	Method
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_16

>merge|NC_019729|16|1286929-1287037|CRISPRCasFinder
CTGAGAAAGGCTATAACTCCCTATCAGGGATTGAAACCCCTTGTACAACCTTTTGCACGAAGAAAATTATTAGCCGCAATTAACCTAACTCCCTATCAGCGTGGGAGTT

>NC_019729|16|15|1286929-1287037|CRISPRCasFinder
CTGAGAAAGGCTATAACTCCCTATCAGGGATTGAAAC	CCCTTGTACAACCTTTTGCACGAAGAAAATTATTA
GCCGCAATTAACCTAACTCCCTATCAGCGTGGGAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174983.1\|1273307_1276619_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_019729.1\|WP_015174982.1\|1272473_1272713_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177725
NC_019729.1\|WP_015174987.1\|1278681_1279449_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NC_019729.1\|WP_015174999.1\|1295622_1296717_-\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|349755
NC_019729.1\|WP_015174989.1\|1280446_1281139_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175000.1\|1296902_1297103_-\|DUF2862-domain-containing-protein	unknown	unknown	gnl\|CDD\|371361
NC_019729.1\|WP_015174990.1\|1281490_1283257_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|197778
NC_019729.1\|WP_041622938.1\|1297773_1298880_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NC_019729.1\|WP_015174997.1\|1292273_1294340_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NC_019729.1\|WP_015174984.1\|1276691_1276931_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174994.1\|1288056_1289169_-\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|224993
NC_019729.1\|WP_190274417.1\|1287233_1287761_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_019729.1\|WP_015174992.1\|1283617_1285735_+\|integral-membrane-protein-kinase	unknown	unknown	gnl\|CDD\|226699
NC_019729.1\|WP_015175002.1\|1299303_1301118_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_019729.1\|WP_015174985.1\|1276983_1277586_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174988.1\|1279625_1280297_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175003.1\|1301481_1302408_-\|glutaminase-A	unknown	unknown	gnl\|CDD\|234880
NC_019729.1\|WP_015174998.1\|1294398_1295136_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019729.1\|WP_015174986.1\|1277832_1278495_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226696
NC_019729.1\|WP_015174996.1\|1290061_1291975_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319849

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174983.1\|1273307_1276619_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_019729.1\|WP_015174982.1\|1272473_1272713_+\|hypothetical-protein	gnl\|CDD\|177725	PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H); Provisional.	0.000189135
NC_019729.1\|WP_015174987.1\|1278681_1279449_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	1.2703e-58
NC_019729.1\|WP_015174999.1\|1295622_1296717_-\|ArsA-family-ATPase	gnl\|CDD\|349755	cd02035, ArsA, Arsenical pump-driving ATPase ArsA. ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.	2.75372e-66
NC_019729.1\|WP_015175000.1\|1296902_1297103_-\|DUF2862-domain-containing-protein	gnl\|CDD\|371361	pfam11061, DUF2862, Protein of unknown function (DUF2862). This family of proteins has no known function.	1.47733e-29
NC_019729.1\|WP_015174990.1\|1281490_1283257_+\|ribonuclease-III	gnl\|CDD\|197778	smart00535, RIBOc, Ribonuclease III family.	8.84327e-14
NC_019729.1\|WP_015174997.1\|1292273_1294340_+\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NC_019729.1\|WP_041622938.1\|1297773_1298880_+\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	1.65192e-08
NC_019729.1\|WP_015174994.1\|1288056_1289169_-\|precorrin-8X-methylmutase	gnl\|CDD\|224993	COG2082, CobH, Precorrin isomerase [Coenzyme metabolism].	6.50728e-63
NC_019729.1\|WP_015174992.1\|1283617_1285735_+\|integral-membrane-protein-kinase	gnl\|CDD\|226699	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only].	1.40405e-110
NC_019729.1\|WP_015175002.1\|1299303_1301118_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	3.53898e-61
NC_019729.1\|WP_015174985.1\|1276983_1277586_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.71159e-30
NC_019729.1\|WP_190274417.1\|1287233_1287761_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	4.26757e-37
NC_019729.1\|WP_015175003.1\|1301481_1302408_-\|glutaminase-A	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	2.80069e-133
NC_019729.1\|WP_015174998.1\|1294398_1295136_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.02784e-14
NC_019729.1\|WP_015174986.1\|1277832_1278495_+\|VWA-domain-containing-protein	gnl\|CDD\|226696	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only].	6.13502e-83
NC_019729.1\|WP_015174996.1\|1290061_1291975_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319849	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron. Bacillus subtilis ZosA/PfeT (previously known as YkvW) transports copper, it may also transport zinc under oxidative stress and may also be involved in ferrous iron efflux. ZosA/PfeT is expressed under the regulation of the peroxide-sensing repressor PerR. It is involved in competence development. Disruption of the zosA/pfeT gene results in low transformability. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NC_019729.1|WP_015174992.1|1283617_1285735_+|integral-membrane-protein-kinase
MQLQRQFSGQLIAIDTKTAIASGGEGRIYPIAQDSSLVAKIYHKPTDEDGDKLTVMFSMPPDAPIAEPGHASIAWPIDLLHTVGGREKIVGFVMPRVNKVMPVHTFYTPKTRREQKPLFSYLYLHRTARNLASAVNALHVRGYVIGDVNESNILVTDTALVTLVDTDSFQVRDPYTGYVYRCPVGKPEFTPPELQGQTFRDIDRSPEHDLFGLAVLIFQLLMEGTHPFSGVYLGSGEPPSLEARIRSGHFPTGTKRIPYRPMPAAPPFEMLHPRLQQMFIRCFEEGHGNPSARPDAKTWVNAIREAEDALVTCSKNSQHKYGNHLSRCPWCDRAKLLKGRDPFPSRQAVRNGLHLQPAKIKRKKPQPPPVANPPAVRRQQPATGLPRPLGQYAVPLLPMPMSSRSRTPAPQLPAGKFERIVQDAAWGGVWGSLCLAAIGGIYSVIAEGGAAILGAIFVGTIWGCFFGMMWGVFTLPPNQIWRKWGGVLVGAAWGAFLLAAIGGAVFGAINSNPGIGERILAGAGVGAVWGCVWAAFQPPLALPVGRVWGRRGGYLGAVWGSFVGTLAGIFLGAGLVVWQQYGVQMRPVNEFAGLLLGVAIVAAGVGSVGGVVSGGLLGFCGFAPKLPISFQPSGVNGGTLGAIWGSFLGTFAGAVLGAGVCAMFPGVSAGVPVELGPVAGAIVGAGLGAIWGVVSGTVWGALGKW
>NC_019729.1|WP_015174990.1|1281490_1283257_+|ribonuclease-III
MTVQGTSIVENNLQKVWEELEAARKMQDEWMNYGVDFVDLYVEDAGGDWLEKWGKCEEELEQIKNKKVDIEAVKAAIDIPSFQQTKLLEIALNCRYSTSYYSDRPEESPAWQEVKYKRLSLLGGSIFGAVVTDYLYREYPAIDPDAISTLKARLADPKKLADFAQNLKLNELNWRVWNRKETEEREYNIIVSETCEALFGAIYLELDRDFFRGGNWLIQGWIEPNVSQHGDLTQRRKIGRENEVKRREILGGDILDAIAIDYLYHRFPERNASQLTRWKNMLVAKKIFPKDFKAKLGSHYLELDSNFSRTRDWLVDNFIKSAVDELLEESETQPEYVIDSANPESLPELVSRITDKKWKKEFVRVVSILQPADELLLLMQQKLDSMAAKDETLQQLLIWANHKSQLVQRNFKPAEIRAFYVALVCVLDLALTRVLDPSLKFDRSKVRKLRNSLVKAGKNVEFAEVNECLKLAFDNDVAGILVGIWGLDIEPELKQLLAQFQTEMPDLQNWKKWRKECGSCWLAKFKTAIGYNQNFRPQQKTLLKQYYYAHNLLVECLNSDNCQVTPAVRQKIEDKMLLLSVDLKLVHI
>NC_019729.1|WP_015174989.1|1280446_1281139_+|hypothetical-protein
MQAQEIKDKLNSLISDADLIDPSLARRLDEINRWVKDVKPGSLTAKKFVMAFLLQLIRDSQVWLAVQSLPSEREQQAAFELMTPGERYWYSYLFPKWLSETDRKFYIWKQKLKAGKFDPADDLVIRAIAARIVDRQGTVLYRYVADLSMATDSIVSSRQQQPLCIQVTTLSDEFSEQKYQNWQQTLQDWGIDRGLFLSYDKNDANFLNQLVNIALYNSDNLPAGRYLKFP
>NC_019729.1|WP_015174988.1|1279625_1280297_+|hypothetical-protein
MTASRISARSLLRETFATTGPLYAPLLLINSPSLIFAALNSLGKLGSAGVAVNIIYWFVVVPLLSGAMIFYTYRSLTKNQVTVGQAFNQANRRLLPLIGVYIMCLLLVSAGFIALIIPGFYVSYRLIFSSYATVIDNSSALDSLSSSWELTKGRWWLVFRSTLLIFFVLFVPILLISLLISSTKNLLASQLAANLLGFLAGPSINVYFVFLYLRLRESVAATQ
>NC_019729.1|WP_015174987.1|1278681_1279449_+|protein-phosphatase-2C-domain-containing-protein
MQNSSFNWQVVAASVIGTSHEKRSQPCQDAHCWRLLPNGVLAAAVADGAGSAALAEIGAKIAVEAVVETICQQQERLPQNDDEWQVFLTASLQVARAQVEAEAAVREVAARDLACTLIAVVATPELIAVAQIGDGAAVAGDSVGNAIALTVPPCGEYINETVFLISPNAIETAQFQVLREKLRHLAVFSDGLQMLALKIPEGTPHGPFFAPLFRFSGEWKEEEDAKQQLESFLRSPRVSERTDDDLTLLLATFSN
>NC_019729.1|WP_015174986.1|1277832_1278495_+|VWA-domain-containing-protein
MRLDEAVEFAENPEPRCPCVLLLDTSGSMQGAPIDALNEGLEIFRNDLIKDELAKKRVEVAIISFDNHIKVVQDFVTADQFEAPLLTAQGQTHMGAGIQLALDTIAARKSEYRNNGITYYRPWVFMITDGEPQGESDDVVEIAAQRIKEEEINKRVAFFAVGVEGANITRLSQIVERTPVKLRGLDFREMFIWLSASMQRVSHSKIDEQVALPPPGWGTV
>NC_019729.1|WP_015174985.1|1276983_1277586_-|Uma2-family-endonuclease
MIATVTQKFTFDQFLVECPEDGLYELVNGEIVEMNATRNHDDVANFMLFGFNDEIRRLNLNYVVNTTAVIRTVSKAGIEQGRRPDVSVIDRDLWRSNRSAYAALREPIQLAVEVTSTNWEDDYTDKLDEYRRLGIPEYWIVDYLAIGSREFLGNPKVPTVFVHLLDADGNYQRSAFKGSERIVSRTFPELTLTAEEVMNV
>NC_019729.1|WP_015174984.1|1276691_1276931_-|hypothetical-protein
MKSVSEKKAISPWSYKPWWCQPWSILLTGTSLIGGSWFLLKTVWITVLVAIPLLAWMGFFLLVWPRLMLSSGVLDSHQD
>NC_019729.1|WP_015174983.1|1273307_1276619_+|carbamoyl-phosphate-synthase-large-subunit
MPRRQDLKKILLIGSGPIVIGQACEFDYSGTQACKALREEGFEVVLVNSNPATIMTDPETADRIYIEPLTPVILEQIIAQERPQAILPTMGGQTALNLAVAVAKNGVLEKYKVELIGAKLPAIEMAEDRLLFKEAMARIGVAVCPSGIANTLDEAKAIGHQIGSYPLIIRPAFTMGGTGGGISYNQEEFEEMAQGGIDASPVSQILIEQSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDASVKIIREIGVETGGSNIQFAVNPVNGDFIVIEMNPRVSRSSALASKATGFPIAKMAAKLAVGYTLDEISNDITKKTPASFEPTIDYVVTKIPRFAFEKFPGSEPTLTTQMKSVGEVMAIGRSFNESFQKALRGLETGRAGFGCDKPEKLPSLEQIRAGLRTPNPERIFTVRHAMMMGMSVEDIFEFTGIDPWFLDKMQELLETEKFLKRTRLEELTKETMFEVKQLGFSDRQIAYATKTSEDQVRAYRKQLGIIPIYKTVDTCAAEFEAFTPYYYSTYEAGAAIWDLGDEEKKVSPVGHSLAPESEVLPSTKRKVMILGGGPNRIGQGIEFDYCCCHASYSLGEDGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPEGIIIQFGGQTPLKLAVPLQKALENHPDVQTKIWGTSPDSIDTAEDRERFEKILRELDIQQAANGLARSFDDALIVAQRIGYPVVVRPSYVLGGRAMEIVYSDTELERYMTYAVLVEPDHPILIDKFLENAIEVDVDAIADVTGNVTIGGIMEHIEEAGIHSGDSACSIPYQTLSEAALATIRRQTVELAKALKVIGLMNIQFAVQGEQVFILEANPRASRTVPFVSKAIGVPLAKMASRVMSGKTLEALGFTEEIIPTHVSVKEAVLPFAKFPGTDTLLGPEMRSTGEVMGIDTDFGKAFAKAQLGTGQMMPLLGTVLVSMRDRDKIAVIPVVKEFLELGFKVVATHGTRKVLREQGLEVDLELKLHEGRPNLLDSIKNEKIQLIITTPSGEESRADGIFIRRTALTYKIPIITTIAGAKATAAGIRSLKSHPMEVKAIQDYYPQT
>NC_019729.1|WP_015174982.1|1272473_1272713_+|hypothetical-protein
MSQEFVPDDNFSARPNDDSAASEQEVVRIAVFGSRAAVLETIHTLYRLGFAAVGDWSPPQRGAQPGQVISVLIRRSRKA
>NC_019729.1|WP_190274417.1|1287233_1287761_+|MgtC/SapB-family-protein
MFFSPNDWQTVTLRLTAALLVGFAIGMNRQQPGRPAGLRTFTIVSLGAAIFVMIPLQMDGDSTFSSSNALSRTIQGVATGVGFLGGGIILQQTQYPVGKAEVKGLTSAATIWLAAGLGAAAGCGLWVMSLIGTLFALLVLSGVKRLKKSALIRAYANSQPKTRVKDAASVQDRQP
>NC_019729.1|WP_015174994.1|1288056_1289169_-|precorrin-8X-methylmutase
MQQYLTIKQLTEAVKGTITPRMVRHYHALGLLSPAVRSTSNYRLYTRSDVQRLQRIVALKQQGFQLSHIRKLLETDADASPDALMATLQRQYLSVIQQIVRLRETASALEGLLGRDISCQAVQADALAQLRLLQAETEGGLDELEQIWKGWDAGAHTHPEDFGESLQHLLPDLPDRSEIEVDLLSKLVLACGDCSLLPFVKLSETAIKSAREALKNQCQIVADVPPVFAALDGTRLAHLGTSIATLIDDPHINAAAEAEQEFWQQREWFDKLLKLEKGCILVIGYAPSVLMAVCEAIECGQLQPALVVGMPIGFSHSPVAKRRLVRSGVDYITTVGTFGGGLLAAVALNALVESLIEKPNCHCHLNGKLA
>NC_019729.1|WP_015174996.1|1290061_1291975_+|heavy-metal-translocating-P-type-ATPase
MTPNSLPISRLGRLAEEHPDAVTAALCGILVILGSLALQLGWLGVAALILPAAYVIGGYSSTREGLTTLFQERELDVDLLMIVAALGAAGLGMWRQEYHLIVDGAVLILIFAISGALEGYAMQRTERSIRSLMSLTADTARVVMYGGEREVAIDKLEIGDCILVKPGEIIPTDAIIIEGCSAIDQASITGESMPVEKTSGDEVYAGTINGAGALKLEVHKTPESSLIQRVIRLVQEAQTAAPPSQMFVEKFERGYAKLIVALGLLLATLPPFVLGWNWEETIYRALIFLVVASPCALMASIMPALLSGIANGARQGILFKSGAQLEMIGKVRAIAFDKTGTLTTGKPEVIQIVPAIGYTETEVLQLAAALEAHSEHAIASSIVSAAQQQQLQLSTATDVQAKIGQGIIGKVNNQIIAIGKADFVEATSELSQISQQLQAEGKTVVWVAKGEQLLGIIAVADTIRPEAAATVKHLQKLGVEHIIMLTGDNEQTAQHIARQLGINEVYAELLPEDKVQAIKQLQTQYQTVAMVGDGINDAPALAQASAGIAMGISGSDVALETADIVLMADKLEQLAKAISLGRRAQNVVKQNIVFALSCIVLLLAANFFGNITMPFGVIGHEGSTVIVTLSGLRLLRN
>NC_019729.1|WP_015174997.1|1292273_1294340_+|elongation-factor-G
MNEKVLGAARNVAIVGPYLSGKTALLESLLSVTGTITRKGNVKDGNTIGDSSPEARDRKMSVEVNAATAEYEGVRFTFLDCPGSVEFVQETYNALIGVDAAIIVCEPVADRALTLAPLFKFLDDWEIPHLVFINKIDRACTDETTCCSNFTDVLDALKSVSSRPIVPHQYPIGKNEQIIGFIDLVTEQAYHYRPGAAAEPVPLPEHLKAQESAARQQMLEELANFDDHLLEELLEEINPDAEEITRDLKMELGADLIVPVFIGIAEQDFGVRPLLEALLREAPTPETTADRRGIILSENKVLAQILKTYYTPQGGKLSLVRMWRGTLADGAILNGVRVNGLYRLTGQQTQSLQSVSAGEIVALGRLEGLKTGDTLAIDRSEELPKAEIIPPVYALAIAPEKRNDEVKLSSALAKLLEEDPSLVWEQHGDTHEIILWGQGEIHLKVALDRLRRKYNLPMLTHLPQVPYKETIRKPASSIHGRYKHQSGGHGQFGDVYLDIQPQPRGEGFTFSDKIVGGVVPKQYIPGVEVGVREYLDRGPLGFPVVDVAVTLTNGSYHTVDSSEQAFKQAARLAMQEGMAKCEPALLEPIAKVEICAPNECTSKVLQLVSGHRGQILGYEGKKDWKGWDAVSAYLPIAEMQNLIVELRSQTMGVGFFNWEFDRLQEVPEPLAKRVLLTTNGNGNGNGKS
>NC_019729.1|WP_015174998.1|1294398_1295136_-|Uma2-family-endonuclease
MVTQLQSPDKSNIIYPDDNGEPMSDNTEQFRLIVWLKENLELLFANVANVFVAGNLLWYPVEGNNKISQAPDAMVVFGRPKGYRGSYQQWNEDNIAPQVVFEIWSPGNRLTPMIQKFKFYERYGVEEYYLFDPQTLELTGWQRVEEELEAIEQIDGWISPRLGVRFGLSETGLEMFGPSGEPFVSFVELAQLIQQAETRAQQAELRVQQAEEQVQQAESLLEQERSRSQALELRLREMGIDPNEL
>NC_019729.1|WP_015174999.1|1295622_1296717_-|ArsA-family-ATPase
MALILTFLGKGGTGRSTIAIATAKKYAAQGKRVLLLGQDPGPGLGILLGVPLTLNPQEIAPNLKAVQVQSAPLLERRWDEVKQLEAQYVRTPFFKQIYGQELGVLPGMDSALALNELREYEDSKQYDVIVYDGTGGMDTLRMLGMPEILSWYIRRFRQALVDSDLGKALSPFIQPVFSTVLTVDLSGDNPFQSTKQVDNLLDKGKEALADPNRTAAFLVTTGDASAIATARYLWGSSQQVGLTVGGVIVNQASVTEAITADFDPLTAVSVPAHSDNNWQPLIDALPDFSEAAKAPKPININIAQRQVSLFLPGFDKKEIKLIQSGPEVTIEAGDQRRNILLPPALTGKSVTGAKFLNGYLIISF
>NC_019729.1|WP_015175000.1|1296902_1297103_-|DUF2862-domain-containing-protein
MAIEVGQRVKVRRLRDRIPANMVGKIKENPVGTVDGFKMVDGSGVGVVVKFDGFATWFFEDELEIV
>NC_019729.1|WP_041622938.1|1297773_1298880_+|FecR-domain-containing-protein
MNKIFTCGRSTKIPLLSLSLAVLASLSPFRGTIASPLSPSPKQPSNTTKIVSVARQPAQPTASKSPKNPATAAANLSPAETINAQGTAAGRSLEIEEIRGTVSFKGRPAVVGDRLLAPGDEIITGPDSTARLGIDNNIGIVEVAEKTAVRISNLSSRAGGEKDTAIFVSRGRVRLSIGKTAAATPAASTSTIIPPNQIVALNTFSGLGKSSQIAQKTRSAKNAPVRVETPEGVAGVRGTSFGVSVGGGKTAVETIEGAVAVSGNTESEVVVNSGNATTIFPQTSPVAPSASPRLAQLKVRRLLRLSGNIYRLSGQINPIDTVYVHNEEIKIDRKGNFKIQGILPPSRRLKIVVRGPSVTERHYSLAVP
>NC_019729.1|WP_015175002.1|1299303_1301118_+|adenylate/guanylate-cyclase-domain-containing-protein
MKFKKWIDHLKQNQLIGLRQYIITNPPWMTGAIAGIMSVAMLQLGMWKPLEYLGYKTLFQIRESRILPNPGWDHRIAVIAIEPHSLQEYGKFPWPRNRYAQLLEALKKSPPTAVGFDILFLDPSPKDDILAAAIVANGKVVLPRTIKEEPVASLKAAAAGVGHIGQEADSDGITRVSKIFLNGVPNFGLAMIHRYNAANPQDPVLLPQSKNKPQKKAWVNWPGPTENLPTYAFVDVVEGNIPADALTNKLVLVGIVATGFDPISSPLNKTTAGVYLYAALIDNLLNQRLLRRLPVLVEILLLLGIGPLTALVLGNRGVQERIAIALGLPIIWIAAAALLFGFFFWWVPIAAPIGTLILSSTALQLREQYEKQQLMRLFEKHVDPETAQLIWQRKAEIFEQGELEPQELTATVLFMDIRSFTSISEKMRPRDLLTWLNNYLEAMTNCIMDHGGVVDKYIGDAIMAVFGVPFCHTEYREIQQDALNAVAACIAMHERLHQLNQQLRSEHKPLIKFGIGLHTGQLVAGSVGGSRRLNYSVIGDAVNVAARLEAMNKEIVSDSPFNLLVTARTFAYVRDRYEGQKVGSIQLRGKKEETVVYAILGEKH
>NC_019729.1|WP_015175003.1|1301481_1302408_-|glutaminase-A
MKISTSKLSSLQPEQLAAWAKEAMNRSKSGQIPAYIPLLARADRQGFAVQIRAIDGQIMSWGSIAQTFPLMSAVKPFVLLYLLCELGEKRVFDCVGCEPSELPFNSLTQLEIDRGKPRNPMINSGAIALASLIPGQNAVARCQNLLDWLNQQANSLLFVDELMLDSVKTNPNQNNWNLALKMVESGYVQNSEIALETYNRVCCLSGNVEDLAKLGMVLVNNGDRPMGENCRTVKALMATCGLYEASGRFALRVGLPAKSGVSGAMLSVIPGQGAIGFYSPPLDKEGNSVGGLFLLEQIAKTLRLSVFD

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Crispr_ID: NC_019729_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_15

1286014-1286840

Orphan

I-D,II-B

Consensus_repeat	Method
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	PILER-CR
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	CRT

11 spacers

The CRISPR arrays of NC_019729_15

>merge|NC_019729|15|1286014-1286840|PILER-CR,CRISPRCasFinder,CRT
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACTCCAACCTTAAATTCCTGAGCTGATCGCTTTTCGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACACCATAAACCCCATAGGGGCAAGGGCCACACCAGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACTCGCTCGGCTTGTTCTTGCAGCAATCGTGCGTACTGGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACTTTAAAATCTAATTGGACGGATAGGCTAATCAGAGTAGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACAGTTCATCTTTAGAACCGCGTACAGATCGGGATTTTCGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACCAGTCACGCTTGCTACCTTTTGAAGTTGTCCACAGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACAGTCATTCGATAATTCTTGAAGATTTACAAGCCAAGGGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACTGGTATTGTATTGCGGTCTGTAGCCATCGAGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACGTTGAAACTCCTGATGATTTCACCAAACATATTGAGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACGTGGAGAAGCAGTTAAGTTGTTAATTAAATCAAGCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACAGCCCGCAAATTGATATTCAAGATGCGGACGCGGTGAAGCCGCAATTAACCTATAGCGGTTCTCGGAAAAATGAG

>NC_019729|15|5|1286014-1286765|PILER-CR
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TCCAACCTTAAATTCCTGAGCTGATCGCTTTTC
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	ACCATAAACCCCATAGGGGCAAGGGCCACACCA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TCGCTCGGCTTGTTCTTGCAGCAATCGTGCGTACTG
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TTTAAAATCTAATTGGACGGATAGGCTAATCAGAGTA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGTTCATCTTTAGAACCGCGTACAGATCGGGATTTTC
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	CAGTCACGCTTGCTACCTTTTGAAGTTGTCCACA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGTCATTCGATAATTCTTGAAGATTTACAAGCCAAGG
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TGGTATTGTATTGCGGTCTGTAGCCATCGA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	GTTGAAACTCCTGATGATTTCACCAAACATATTGA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	GTGGAGAAGCAGTTAAGTTGTTAATTAAATCAA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC

>NC_019729|15|14|1286014-1286766|CRISPRCasFinder
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TCCAACCTTAAATTCCTGAGCTGATCGCTTTTC
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	ACCATAAACCCCATAGGGGCAAGGGCCACACCA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TCGCTCGGCTTGTTCTTGCAGCAATCGTGCGTACTG
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TTTAAAATCTAATTGGACGGATAGGCTAATCAGAGTA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGTTCATCTTTAGAACCGCGTACAGATCGGGATTTTC
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	CAGTCACGCTTGCTACCTTTTGAAGTTGTCCACA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGTCATTCGATAATTCTTGAAGATTTACAAGCCAAGG
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TGGTATTGTATTGCGGTCTGTAGCCATCGA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	GTTGAAACTCCTGATGATTTCACCAAACATATTGA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	GTGGAGAAGCAGTTAAGTTGTTAATTAAATCAA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAACA

>NC_019729|15|4|1286014-1286840|CRT
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TCCAACCTTAAATTCCTGAGCTGATCGCTTTTC
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	ACCATAAACCCCATAGGGGCAAGGGCCACACCA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TCGCTCGGCTTGTTCTTGCAGCAATCGTGCGTACTG
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TTTAAAATCTAATTGGACGGATAGGCTAATCAGAGTA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGTTCATCTTTAGAACCGCGTACAGATCGGGATTTTC
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	CAGTCACGCTTGCTACCTTTTGAAGTTGTCCACA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGTCATTCGATAATTCTTGAAGATTTACAAGCCAAGG
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	TGGTATTGTATTGCGGTCTGTAGCCATCGA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	GTTGAAACTCCTGATGATTTCACCAAACATATTGA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	GTGGAGAAGCAGTTAAGTTGTTAATTAAATCAA
GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC	AGCCCGCAAATTGATATTCAAGATGCGGACGCGGTGAA
GCCGCAATTAACCTATAGCGGTTCTCGGAAAAATGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015174983.1\|1273307_1276619_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_019729.1\|WP_015174982.1\|1272473_1272713_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177725
NC_019729.1\|WP_015174987.1\|1278681_1279449_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NC_019729.1\|WP_015174999.1\|1295622_1296717_-\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|349755
NC_019729.1\|WP_015174989.1\|1280446_1281139_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175000.1\|1296902_1297103_-\|DUF2862-domain-containing-protein	unknown	unknown	gnl\|CDD\|371361
NC_019729.1\|WP_015174990.1\|1281490_1283257_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|197778
NC_019729.1\|WP_041622938.1\|1297773_1298880_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NC_019729.1\|WP_015174997.1\|1292273_1294340_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NC_019729.1\|WP_015174984.1\|1276691_1276931_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015174994.1\|1288056_1289169_-\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|224993
NC_019729.1\|WP_190274417.1\|1287233_1287761_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_019729.1\|WP_015174992.1\|1283617_1285735_+\|integral-membrane-protein-kinase	unknown	unknown	gnl\|CDD\|226699
NC_019729.1\|WP_015175002.1\|1299303_1301118_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_019729.1\|WP_015174985.1\|1276983_1277586_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015174988.1\|1279625_1280297_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175003.1\|1301481_1302408_-\|glutaminase-A	unknown	unknown	gnl\|CDD\|234880
NC_019729.1\|WP_015174998.1\|1294398_1295136_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019729.1\|WP_015174986.1\|1277832_1278495_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226696
NC_019729.1\|WP_015174996.1\|1290061_1291975_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319849

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015174983.1\|1273307_1276619_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_019729.1\|WP_015174982.1\|1272473_1272713_+\|hypothetical-protein	gnl\|CDD\|177725	PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H); Provisional.	0.000189135
NC_019729.1\|WP_015174987.1\|1278681_1279449_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	1.2703e-58
NC_019729.1\|WP_015174999.1\|1295622_1296717_-\|ArsA-family-ATPase	gnl\|CDD\|349755	cd02035, ArsA, Arsenical pump-driving ATPase ArsA. ArsA ATPase functions as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes, respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.	2.75372e-66
NC_019729.1\|WP_015175000.1\|1296902_1297103_-\|DUF2862-domain-containing-protein	gnl\|CDD\|371361	pfam11061, DUF2862, Protein of unknown function (DUF2862). This family of proteins has no known function.	1.47733e-29
NC_019729.1\|WP_015174990.1\|1281490_1283257_+\|ribonuclease-III	gnl\|CDD\|197778	smart00535, RIBOc, Ribonuclease III family.	8.84327e-14
NC_019729.1\|WP_015174997.1\|1292273_1294340_+\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NC_019729.1\|WP_041622938.1\|1297773_1298880_+\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	1.65192e-08
NC_019729.1\|WP_015174994.1\|1288056_1289169_-\|precorrin-8X-methylmutase	gnl\|CDD\|224993	COG2082, CobH, Precorrin isomerase [Coenzyme metabolism].	6.50728e-63
NC_019729.1\|WP_015174992.1\|1283617_1285735_+\|integral-membrane-protein-kinase	gnl\|CDD\|226699	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only].	1.40405e-110
NC_019729.1\|WP_015175002.1\|1299303_1301118_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	3.53898e-61
NC_019729.1\|WP_015174985.1\|1276983_1277586_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.71159e-30
NC_019729.1\|WP_190274417.1\|1287233_1287761_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	4.26757e-37
NC_019729.1\|WP_015175003.1\|1301481_1302408_-\|glutaminase-A	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	2.80069e-133
NC_019729.1\|WP_015174998.1\|1294398_1295136_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.02784e-14
NC_019729.1\|WP_015174986.1\|1277832_1278495_+\|VWA-domain-containing-protein	gnl\|CDD\|226696	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only].	6.13502e-83
NC_019729.1\|WP_015174996.1\|1290061_1291975_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319849	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron. Bacillus subtilis ZosA/PfeT (previously known as YkvW) transports copper, it may also transport zinc under oxidative stress and may also be involved in ferrous iron efflux. ZosA/PfeT is expressed under the regulation of the peroxide-sensing repressor PerR. It is involved in competence development. Disruption of the zosA/pfeT gene results in low transformability. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NC_019729.1|WP_015174992.1|1283617_1285735_+|integral-membrane-protein-kinase
MQLQRQFSGQLIAIDTKTAIASGGEGRIYPIAQDSSLVAKIYHKPTDEDGDKLTVMFSMPPDAPIAEPGHASIAWPIDLLHTVGGREKIVGFVMPRVNKVMPVHTFYTPKTRREQKPLFSYLYLHRTARNLASAVNALHVRGYVIGDVNESNILVTDTALVTLVDTDSFQVRDPYTGYVYRCPVGKPEFTPPELQGQTFRDIDRSPEHDLFGLAVLIFQLLMEGTHPFSGVYLGSGEPPSLEARIRSGHFPTGTKRIPYRPMPAAPPFEMLHPRLQQMFIRCFEEGHGNPSARPDAKTWVNAIREAEDALVTCSKNSQHKYGNHLSRCPWCDRAKLLKGRDPFPSRQAVRNGLHLQPAKIKRKKPQPPPVANPPAVRRQQPATGLPRPLGQYAVPLLPMPMSSRSRTPAPQLPAGKFERIVQDAAWGGVWGSLCLAAIGGIYSVIAEGGAAILGAIFVGTIWGCFFGMMWGVFTLPPNQIWRKWGGVLVGAAWGAFLLAAIGGAVFGAINSNPGIGERILAGAGVGAVWGCVWAAFQPPLALPVGRVWGRRGGYLGAVWGSFVGTLAGIFLGAGLVVWQQYGVQMRPVNEFAGLLLGVAIVAAGVGSVGGVVSGGLLGFCGFAPKLPISFQPSGVNGGTLGAIWGSFLGTFAGAVLGAGVCAMFPGVSAGVPVELGPVAGAIVGAGLGAIWGVVSGTVWGALGKW
>NC_019729.1|WP_015174990.1|1281490_1283257_+|ribonuclease-III
MTVQGTSIVENNLQKVWEELEAARKMQDEWMNYGVDFVDLYVEDAGGDWLEKWGKCEEELEQIKNKKVDIEAVKAAIDIPSFQQTKLLEIALNCRYSTSYYSDRPEESPAWQEVKYKRLSLLGGSIFGAVVTDYLYREYPAIDPDAISTLKARLADPKKLADFAQNLKLNELNWRVWNRKETEEREYNIIVSETCEALFGAIYLELDRDFFRGGNWLIQGWIEPNVSQHGDLTQRRKIGRENEVKRREILGGDILDAIAIDYLYHRFPERNASQLTRWKNMLVAKKIFPKDFKAKLGSHYLELDSNFSRTRDWLVDNFIKSAVDELLEESETQPEYVIDSANPESLPELVSRITDKKWKKEFVRVVSILQPADELLLLMQQKLDSMAAKDETLQQLLIWANHKSQLVQRNFKPAEIRAFYVALVCVLDLALTRVLDPSLKFDRSKVRKLRNSLVKAGKNVEFAEVNECLKLAFDNDVAGILVGIWGLDIEPELKQLLAQFQTEMPDLQNWKKWRKECGSCWLAKFKTAIGYNQNFRPQQKTLLKQYYYAHNLLVECLNSDNCQVTPAVRQKIEDKMLLLSVDLKLVHI
>NC_019729.1|WP_015174989.1|1280446_1281139_+|hypothetical-protein
MQAQEIKDKLNSLISDADLIDPSLARRLDEINRWVKDVKPGSLTAKKFVMAFLLQLIRDSQVWLAVQSLPSEREQQAAFELMTPGERYWYSYLFPKWLSETDRKFYIWKQKLKAGKFDPADDLVIRAIAARIVDRQGTVLYRYVADLSMATDSIVSSRQQQPLCIQVTTLSDEFSEQKYQNWQQTLQDWGIDRGLFLSYDKNDANFLNQLVNIALYNSDNLPAGRYLKFP
>NC_019729.1|WP_015174988.1|1279625_1280297_+|hypothetical-protein
MTASRISARSLLRETFATTGPLYAPLLLINSPSLIFAALNSLGKLGSAGVAVNIIYWFVVVPLLSGAMIFYTYRSLTKNQVTVGQAFNQANRRLLPLIGVYIMCLLLVSAGFIALIIPGFYVSYRLIFSSYATVIDNSSALDSLSSSWELTKGRWWLVFRSTLLIFFVLFVPILLISLLISSTKNLLASQLAANLLGFLAGPSINVYFVFLYLRLRESVAATQ
>NC_019729.1|WP_015174987.1|1278681_1279449_+|protein-phosphatase-2C-domain-containing-protein
MQNSSFNWQVVAASVIGTSHEKRSQPCQDAHCWRLLPNGVLAAAVADGAGSAALAEIGAKIAVEAVVETICQQQERLPQNDDEWQVFLTASLQVARAQVEAEAAVREVAARDLACTLIAVVATPELIAVAQIGDGAAVAGDSVGNAIALTVPPCGEYINETVFLISPNAIETAQFQVLREKLRHLAVFSDGLQMLALKIPEGTPHGPFFAPLFRFSGEWKEEEDAKQQLESFLRSPRVSERTDDDLTLLLATFSN
>NC_019729.1|WP_015174986.1|1277832_1278495_+|VWA-domain-containing-protein
MRLDEAVEFAENPEPRCPCVLLLDTSGSMQGAPIDALNEGLEIFRNDLIKDELAKKRVEVAIISFDNHIKVVQDFVTADQFEAPLLTAQGQTHMGAGIQLALDTIAARKSEYRNNGITYYRPWVFMITDGEPQGESDDVVEIAAQRIKEEEINKRVAFFAVGVEGANITRLSQIVERTPVKLRGLDFREMFIWLSASMQRVSHSKIDEQVALPPPGWGTV
>NC_019729.1|WP_015174985.1|1276983_1277586_-|Uma2-family-endonuclease
MIATVTQKFTFDQFLVECPEDGLYELVNGEIVEMNATRNHDDVANFMLFGFNDEIRRLNLNYVVNTTAVIRTVSKAGIEQGRRPDVSVIDRDLWRSNRSAYAALREPIQLAVEVTSTNWEDDYTDKLDEYRRLGIPEYWIVDYLAIGSREFLGNPKVPTVFVHLLDADGNYQRSAFKGSERIVSRTFPELTLTAEEVMNV
>NC_019729.1|WP_015174984.1|1276691_1276931_-|hypothetical-protein
MKSVSEKKAISPWSYKPWWCQPWSILLTGTSLIGGSWFLLKTVWITVLVAIPLLAWMGFFLLVWPRLMLSSGVLDSHQD
>NC_019729.1|WP_015174983.1|1273307_1276619_+|carbamoyl-phosphate-synthase-large-subunit
MPRRQDLKKILLIGSGPIVIGQACEFDYSGTQACKALREEGFEVVLVNSNPATIMTDPETADRIYIEPLTPVILEQIIAQERPQAILPTMGGQTALNLAVAVAKNGVLEKYKVELIGAKLPAIEMAEDRLLFKEAMARIGVAVCPSGIANTLDEAKAIGHQIGSYPLIIRPAFTMGGTGGGISYNQEEFEEMAQGGIDASPVSQILIEQSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDASVKIIREIGVETGGSNIQFAVNPVNGDFIVIEMNPRVSRSSALASKATGFPIAKMAAKLAVGYTLDEISNDITKKTPASFEPTIDYVVTKIPRFAFEKFPGSEPTLTTQMKSVGEVMAIGRSFNESFQKALRGLETGRAGFGCDKPEKLPSLEQIRAGLRTPNPERIFTVRHAMMMGMSVEDIFEFTGIDPWFLDKMQELLETEKFLKRTRLEELTKETMFEVKQLGFSDRQIAYATKTSEDQVRAYRKQLGIIPIYKTVDTCAAEFEAFTPYYYSTYEAGAAIWDLGDEEKKVSPVGHSLAPESEVLPSTKRKVMILGGGPNRIGQGIEFDYCCCHASYSLGEDGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPEGIIIQFGGQTPLKLAVPLQKALENHPDVQTKIWGTSPDSIDTAEDRERFEKILRELDIQQAANGLARSFDDALIVAQRIGYPVVVRPSYVLGGRAMEIVYSDTELERYMTYAVLVEPDHPILIDKFLENAIEVDVDAIADVTGNVTIGGIMEHIEEAGIHSGDSACSIPYQTLSEAALATIRRQTVELAKALKVIGLMNIQFAVQGEQVFILEANPRASRTVPFVSKAIGVPLAKMASRVMSGKTLEALGFTEEIIPTHVSVKEAVLPFAKFPGTDTLLGPEMRSTGEVMGIDTDFGKAFAKAQLGTGQMMPLLGTVLVSMRDRDKIAVIPVVKEFLELGFKVVATHGTRKVLREQGLEVDLELKLHEGRPNLLDSIKNEKIQLIITTPSGEESRADGIFIRRTALTYKIPIITTIAGAKATAAGIRSLKSHPMEVKAIQDYYPQT
>NC_019729.1|WP_015174982.1|1272473_1272713_+|hypothetical-protein
MSQEFVPDDNFSARPNDDSAASEQEVVRIAVFGSRAAVLETIHTLYRLGFAAVGDWSPPQRGAQPGQVISVLIRRSRKA
>NC_019729.1|WP_190274417.1|1287233_1287761_+|MgtC/SapB-family-protein
MFFSPNDWQTVTLRLTAALLVGFAIGMNRQQPGRPAGLRTFTIVSLGAAIFVMIPLQMDGDSTFSSSNALSRTIQGVATGVGFLGGGIILQQTQYPVGKAEVKGLTSAATIWLAAGLGAAAGCGLWVMSLIGTLFALLVLSGVKRLKKSALIRAYANSQPKTRVKDAASVQDRQP
>NC_019729.1|WP_015174994.1|1288056_1289169_-|precorrin-8X-methylmutase
MQQYLTIKQLTEAVKGTITPRMVRHYHALGLLSPAVRSTSNYRLYTRSDVQRLQRIVALKQQGFQLSHIRKLLETDADASPDALMATLQRQYLSVIQQIVRLRETASALEGLLGRDISCQAVQADALAQLRLLQAETEGGLDELEQIWKGWDAGAHTHPEDFGESLQHLLPDLPDRSEIEVDLLSKLVLACGDCSLLPFVKLSETAIKSAREALKNQCQIVADVPPVFAALDGTRLAHLGTSIATLIDDPHINAAAEAEQEFWQQREWFDKLLKLEKGCILVIGYAPSVLMAVCEAIECGQLQPALVVGMPIGFSHSPVAKRRLVRSGVDYITTVGTFGGGLLAAVALNALVESLIEKPNCHCHLNGKLA
>NC_019729.1|WP_015174996.1|1290061_1291975_+|heavy-metal-translocating-P-type-ATPase
MTPNSLPISRLGRLAEEHPDAVTAALCGILVILGSLALQLGWLGVAALILPAAYVIGGYSSTREGLTTLFQERELDVDLLMIVAALGAAGLGMWRQEYHLIVDGAVLILIFAISGALEGYAMQRTERSIRSLMSLTADTARVVMYGGEREVAIDKLEIGDCILVKPGEIIPTDAIIIEGCSAIDQASITGESMPVEKTSGDEVYAGTINGAGALKLEVHKTPESSLIQRVIRLVQEAQTAAPPSQMFVEKFERGYAKLIVALGLLLATLPPFVLGWNWEETIYRALIFLVVASPCALMASIMPALLSGIANGARQGILFKSGAQLEMIGKVRAIAFDKTGTLTTGKPEVIQIVPAIGYTETEVLQLAAALEAHSEHAIASSIVSAAQQQQLQLSTATDVQAKIGQGIIGKVNNQIIAIGKADFVEATSELSQISQQLQAEGKTVVWVAKGEQLLGIIAVADTIRPEAAATVKHLQKLGVEHIIMLTGDNEQTAQHIARQLGINEVYAELLPEDKVQAIKQLQTQYQTVAMVGDGINDAPALAQASAGIAMGISGSDVALETADIVLMADKLEQLAKAISLGRRAQNVVKQNIVFALSCIVLLLAANFFGNITMPFGVIGHEGSTVIVTLSGLRLLRN
>NC_019729.1|WP_015174997.1|1292273_1294340_+|elongation-factor-G
MNEKVLGAARNVAIVGPYLSGKTALLESLLSVTGTITRKGNVKDGNTIGDSSPEARDRKMSVEVNAATAEYEGVRFTFLDCPGSVEFVQETYNALIGVDAAIIVCEPVADRALTLAPLFKFLDDWEIPHLVFINKIDRACTDETTCCSNFTDVLDALKSVSSRPIVPHQYPIGKNEQIIGFIDLVTEQAYHYRPGAAAEPVPLPEHLKAQESAARQQMLEELANFDDHLLEELLEEINPDAEEITRDLKMELGADLIVPVFIGIAEQDFGVRPLLEALLREAPTPETTADRRGIILSENKVLAQILKTYYTPQGGKLSLVRMWRGTLADGAILNGVRVNGLYRLTGQQTQSLQSVSAGEIVALGRLEGLKTGDTLAIDRSEELPKAEIIPPVYALAIAPEKRNDEVKLSSALAKLLEEDPSLVWEQHGDTHEIILWGQGEIHLKVALDRLRRKYNLPMLTHLPQVPYKETIRKPASSIHGRYKHQSGGHGQFGDVYLDIQPQPRGEGFTFSDKIVGGVVPKQYIPGVEVGVREYLDRGPLGFPVVDVAVTLTNGSYHTVDSSEQAFKQAARLAMQEGMAKCEPALLEPIAKVEICAPNECTSKVLQLVSGHRGQILGYEGKKDWKGWDAVSAYLPIAEMQNLIVELRSQTMGVGFFNWEFDRLQEVPEPLAKRVLLTTNGNGNGNGKS
>NC_019729.1|WP_015174998.1|1294398_1295136_-|Uma2-family-endonuclease
MVTQLQSPDKSNIIYPDDNGEPMSDNTEQFRLIVWLKENLELLFANVANVFVAGNLLWYPVEGNNKISQAPDAMVVFGRPKGYRGSYQQWNEDNIAPQVVFEIWSPGNRLTPMIQKFKFYERYGVEEYYLFDPQTLELTGWQRVEEELEAIEQIDGWISPRLGVRFGLSETGLEMFGPSGEPFVSFVELAQLIQQAETRAQQAELRVQQAEEQVQQAESLLEQERSRSQALELRLREMGIDPNEL
>NC_019729.1|WP_015174999.1|1295622_1296717_-|ArsA-family-ATPase
MALILTFLGKGGTGRSTIAIATAKKYAAQGKRVLLLGQDPGPGLGILLGVPLTLNPQEIAPNLKAVQVQSAPLLERRWDEVKQLEAQYVRTPFFKQIYGQELGVLPGMDSALALNELREYEDSKQYDVIVYDGTGGMDTLRMLGMPEILSWYIRRFRQALVDSDLGKALSPFIQPVFSTVLTVDLSGDNPFQSTKQVDNLLDKGKEALADPNRTAAFLVTTGDASAIATARYLWGSSQQVGLTVGGVIVNQASVTEAITADFDPLTAVSVPAHSDNNWQPLIDALPDFSEAAKAPKPININIAQRQVSLFLPGFDKKEIKLIQSGPEVTIEAGDQRRNILLPPALTGKSVTGAKFLNGYLIISF
>NC_019729.1|WP_015175000.1|1296902_1297103_-|DUF2862-domain-containing-protein
MAIEVGQRVKVRRLRDRIPANMVGKIKENPVGTVDGFKMVDGSGVGVVVKFDGFATWFFEDELEIV
>NC_019729.1|WP_041622938.1|1297773_1298880_+|FecR-domain-containing-protein
MNKIFTCGRSTKIPLLSLSLAVLASLSPFRGTIASPLSPSPKQPSNTTKIVSVARQPAQPTASKSPKNPATAAANLSPAETINAQGTAAGRSLEIEEIRGTVSFKGRPAVVGDRLLAPGDEIITGPDSTARLGIDNNIGIVEVAEKTAVRISNLSSRAGGEKDTAIFVSRGRVRLSIGKTAAATPAASTSTIIPPNQIVALNTFSGLGKSSQIAQKTRSAKNAPVRVETPEGVAGVRGTSFGVSVGGGKTAVETIEGAVAVSGNTESEVVVNSGNATTIFPQTSPVAPSASPRLAQLKVRRLLRLSGNIYRLSGQINPIDTVYVHNEEIKIDRKGNFKIQGILPPSRRLKIVVRGPSVTERHYSLAVP
>NC_019729.1|WP_015175002.1|1299303_1301118_+|adenylate/guanylate-cyclase-domain-containing-protein
MKFKKWIDHLKQNQLIGLRQYIITNPPWMTGAIAGIMSVAMLQLGMWKPLEYLGYKTLFQIRESRILPNPGWDHRIAVIAIEPHSLQEYGKFPWPRNRYAQLLEALKKSPPTAVGFDILFLDPSPKDDILAAAIVANGKVVLPRTIKEEPVASLKAAAAGVGHIGQEADSDGITRVSKIFLNGVPNFGLAMIHRYNAANPQDPVLLPQSKNKPQKKAWVNWPGPTENLPTYAFVDVVEGNIPADALTNKLVLVGIVATGFDPISSPLNKTTAGVYLYAALIDNLLNQRLLRRLPVLVEILLLLGIGPLTALVLGNRGVQERIAIALGLPIIWIAAAALLFGFFFWWVPIAAPIGTLILSSTALQLREQYEKQQLMRLFEKHVDPETAQLIWQRKAEIFEQGELEPQELTATVLFMDIRSFTSISEKMRPRDLLTWLNNYLEAMTNCIMDHGGVVDKYIGDAIMAVFGVPFCHTEYREIQQDALNAVAACIAMHERLHQLNQQLRSEHKPLIKFGIGLHTGQLVAGSVGGSRRLNYSVIGDAVNVAARLEAMNKEIVSDSPFNLLVTARTFAYVRDRYEGQKVGSIQLRGKKEETVVYAILGEKH
>NC_019729.1|WP_015175003.1|1301481_1302408_-|glutaminase-A
MKISTSKLSSLQPEQLAAWAKEAMNRSKSGQIPAYIPLLARADRQGFAVQIRAIDGQIMSWGSIAQTFPLMSAVKPFVLLYLLCELGEKRVFDCVGCEPSELPFNSLTQLEIDRGKPRNPMINSGAIALASLIPGQNAVARCQNLLDWLNQQANSLLFVDELMLDSVKTNPNQNNWNLALKMVESGYVQNSEIALETYNRVCCLSGNVEDLAKLGMVLVNNGDRPMGENCRTVKALMATCGLYEASGRFALRVGLPAKSGVSGAMLSVIPGQGAIGFYSPPLDKEGNSVGGLFLLEQIAKTLRLSVFD

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Crispr_ID: NC_019729_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_17

1416380-1416485

Orphan

Consensus_repeat	Method
TTGCCGCCTCACTCCTAGCATCAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_019729_17

>merge|NC_019729|17|1416380-1416485|CRISPRCasFinder
TTGCCGCCTCACTCCTAGCATCAACAACCTGGGGAGAACCAGAAACCGGGTTTCTATGTTTCTATTTTGTGCCATGACCCGATTGCTGCCTCACTCCTAGCATCAA

>NC_019729|17|16|1416380-1416485|CRISPRCasFinder
TTGCCGCCTCACTCCTAGCATCAA	CAACCTGGGGAGAACCAGAAACCGGGTTTCTATGTTTCTATTTTGTGCCATGACCCGA
TTGCTGCCTCACTCCTAGCATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175087.1\|1418858_1420013_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NC_019729.1\|WP_015175093.1\|1424651_1425374_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_015175094.1\|1425440_1425917_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NC_019729.1\|WP_041622951.1\|1409410_1410397_+\|arsenosugar-biosynthesis-radical-SAM-protein-ArsS	unknown	unknown	gnl\|CDD\|275025
NC_019729.1\|WP_015175076.1\|1405986_1406691_+\|aquaporin	unknown	unknown	gnl\|CDD\|238204
NC_019729.1\|WP_015175095.1\|1426300_1429111_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_019729.1\|WP_015175077.1\|1406698_1407367_+\|arsenical-resistance-protein-ArsH	unknown	unknown	gnl\|CDD\|274260
NC_019729.1\|WP_015175079.1\|1408514_1408910_+\|arsenate-reductase,-glutathione/glutaredoxin-type	unknown	unknown	gnl\|CDD\|131736
NC_019729.1\|WP_015175089.1\|1421369_1422092_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NC_019729.1\|WP_015175083.1\|1414337_1415237_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_019729.1\|WP_015175088.1\|1420040_1421183_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NC_019729.1\|WP_015175085.1\|1415360_1416089_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NC_019729.1\|WP_150111645.1\|1407403_1408471_+\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NC_019729.1\|WP_015175091.1\|1423240_1423939_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NC_019729.1\|WP_015175090.1\|1422281_1423028_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NC_019729.1\|WP_015175075.1\|1405540_1405882_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_019729.1\|WP_015175082.1\|1411517_1414082_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_019729.1\|WP_015175081.1\|1410496_1411222_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_019729.1\|WP_015175092.1\|1424380_1424635_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175086.1\|1417104_1418421_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175087.1\|1418858_1420013_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.37951e-64
NC_019729.1\|WP_015175093.1\|1424651_1425374_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.23969e-23
NC_019729.1\|WP_015175094.1\|1425440_1425917_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	2.57866e-05
NC_019729.1\|WP_041622951.1\|1409410_1410397_+\|arsenosugar-biosynthesis-radical-SAM-protein-ArsS	gnl\|CDD\|275025	TIGR04167, radical_SAM_domain_protein, radical SAM/Cys-rich domain protein. Members of this protein family have an N-terminal radical SAM domain (pfam04055) and a C-terminal pfam12345 domain. The C-terminal region has several conserved Cys residues, one of which is replaced by selenocysteine in at least five bacterial reference genomes.	0
NC_019729.1\|WP_015175076.1\|1405986_1406691_+\|aquaporin	gnl\|CDD\|238204	cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.	4.34535e-60
NC_019729.1\|WP_015175095.1\|1426300_1429111_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.05785e-172
NC_019729.1\|WP_015175077.1\|1406698_1407367_+\|arsenical-resistance-protein-ArsH	gnl\|CDD\|274260	TIGR02690, arsenical_resistance_protein_ArsH_putative, arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (pfam03358). The function of ArsH is not known. [Cellular processes, Detoxification].	4.76596e-117
NC_019729.1\|WP_015175079.1\|1408514_1408910_+\|arsenate-reductase,-glutathione/glutaredoxin-type	gnl\|CDD\|131736	TIGR02689, arsenate_reductase, arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily. [Cellular processes, Detoxification].	9.59451e-84
NC_019729.1\|WP_015175089.1\|1421369_1422092_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.35366e-87
NC_019729.1\|WP_015175083.1\|1414337_1415237_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.31427e-30
NC_019729.1\|WP_015175088.1\|1420040_1421183_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	7.51003e-165
NC_019729.1\|WP_015175085.1\|1415360_1416089_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.13197e-46
NC_019729.1\|WP_150111645.1\|1407403_1408471_+\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	1.50933e-151
NC_019729.1\|WP_015175091.1\|1423240_1423939_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.69764e-133
NC_019729.1\|WP_015175090.1\|1422281_1423028_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.21062e-156
NC_019729.1\|WP_015175075.1\|1405540_1405882_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.72768e-22
NC_019729.1\|WP_015175082.1\|1411517_1414082_+\|GAF-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	5.60641e-42
NC_019729.1\|WP_015175081.1\|1410496_1411222_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.34922e-47
NC_019729.1\|WP_015175086.1\|1417104_1418421_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0

>NC_019729.1|WP_015175085.1|1415360_1416089_+|HAD-family-phosphatase
MTLKAVLFDFNGVIVNDDPIHEKLIEQLMLDENLQLKRGEFREVCLGRSNRACITALLERRGRFLTETYLDRLLQRKAEAYKAQIDTLEKLPIYPGLAEFIDKVRAAGLKMAVVSGAMRSDIELVLDRAGLAANFELIVAGDDLTASKPAPDGYLLAVELLNQKYPHFNLQPIECLAVEDTFAGIEAAKKAGIQVAGVTHTYPFHMIQRQANWTVDYFADLELDRVAALCSIAPTEPAAKNT
>NC_019729.1|WP_015175083.1|1414337_1415237_+|methyltransferase-domain-containing-protein
MAVGKDTIFERFLSPLMRLAIDEEALKRLYEGIDWERAGDRYRQPNLVYPEYYSSQNFHGIKGGYLNPSAAVSYDPITQYVLPPHETVVRQGLIDAVRVKPRRIIDLGCGTGSTTLMLKQAFPEAEVVGLDLSPYMLVVAEMKAQKAGLNIQWLHGNAESVAFPDASFDLVAASLLFHETPPAVSRAILRESFRLLKVGGQVAILDGNQKTLRQTEWLTDMFEEPYIKSYAAGSLDAWAGAAGFAAVQTHEHWWVNQVTQGVKPLPGEDLEQAKVARGWNWGDRTPDFDGDLPGIPAPA
>NC_019729.1|WP_015175082.1|1411517_1414082_+|GAF-domain-containing-protein
MTDDYQGWEDRSTVALFSETGLTTWLILILPNDQYRLMNLIRREHLMMQNPANQAGSVSAPPPHQAKKLRHFWENISNSAQSRWQQAQSLWQHRRQRRHLLTLLILGTTALTISTTACISYFFVRGLILDNLKQIALLKLEKGTDEIDRWLSSRKAEIETIAYDPRVGTLNWQLVEPRLQGEIYRLKEYFVLSLTQPDGSFINTLGNRGNSKDRQHFKKAIAGQINVSDPLIGRTTKVSTIVISAPIWALPPAPNQVIGVLSGSIKLDRVTSVANSLLYGSDSYAFALNSKGVPIVHPNNNLIGNTDRPAPSFLQSQDPALSTIARQMIDRQTNIELVKIDNKWVYVAYAPLKEVNWSMALVIPRENIESQLQALNLLTSVVAGLLVPAMLAAIWLIYSSENNRAQAEREAMLNRIAGRIRASLELDKIVQSTVEEIVSLLHLELAAFGWYKPQEKILQILWECCPSDSATQAIKFEPYFLENVLVRSGQGEPILLSSDTWAKGVSQPPELKANSYLAVPVQTQNQPQGYLICSHATHWLWSREEIQLLKAVADQLAIAITQAHLYSQTQDQVKLLNSALNELKKTQTHLVQSEKMSSLGQMVAGIAHEINNPVNFISANLPHTSKYTKDLLELVSLYKEAFPEVPQEIADFTEEIELEFIEEDLPHILNSMKIGSERIRSIVLSLRNFSRLDESDKKLADIHEGIENTLLLLSNRIKNRIYIVKKYGKVPSVECYPSQLNQVFMNLLSNAIDALNDIERLDKIITISTGVVREHGARFLKVAIADNGPGIADSVKDQIFNPFFTTKEVGKGTGLGLAISYKIVVDGHGGSITISQPPGGGTEFVVKIPISNGK
>NC_019729.1|WP_015175081.1|1410496_1411222_+|TVP38/TMEM64-family-protein
MNDSRSPDENPPPSNRWKLILGIGLAVALIVAAKFFNFQGILRNALESIASLGPWGPAAFILIYIVATVLFIPGSLLTLGSGVLFGVVGGSVCVSIGSVLGATCAFLVGRYLTRDWVSKQIEDNQKFKAIDSAVASEGWKIVLLTRLSPIFPFNLLNYAFGVTQVSLKDYFFASWIGMIPGTVMYVYIGSLAGSLAALGSSGRSRTAAEWALYGIGLLATIALTVYATRLAKKALDEKIYP
>NC_019729.1|WP_041622951.1|1409410_1410397_+|arsenosugar-biosynthesis-radical-SAM-protein-ArsS
MIQTAVTPFKNKLHSALTKKQITVLQINLGKRCNLACTHCHVEASPKRTEELSPEICDQLIEIIRRFPQIQTVDLTGGAPEMLYGFKPLAEAARAAGKEVIVRSNLTIYFEKGFEDIPEYCAQHQLRIVASLPCYQADNVDKMRGSGVFDSSIRALQKLNQLGYGKNPNLTLDLVYNPQVPATDKFSLTPEQGKLEKDYKVYLAEHFGICFNQLFAITNLPVGRTKFHLEHKKLHKPYLGFLEDNFNRGTLEHLMCRNELSIDYLGNVYDCDFNQMENLPAKTGSGEKINTAKLLASGSLDVIQEVQTAAYCYGCTAGSGSSCGGTLI
>NC_019729.1|WP_015175079.1|1408514_1408910_+|arsenate-reductase,-glutathione/glutaredoxin-type
MKKVMFVCKRNSCRSQMAEGFAKTIGAGKIEVTSSGLESSRVHPTAIQVMSEIGIDITDQTSNPLNEFNAEDYDAVISLCGCGVNLPEAWVLREVFEDWQLDDPDGQPIETFHRVRDEIKARVETLVDSLK
>NC_019729.1|WP_150111645.1|1407403_1408471_+|ACR3-family-arsenite-efflux-transporter
MKNSTILKKLSFLDRYLTLWIFLAMVIGVALGFFIPGIEGFINQFQVGTTNVPIAIGLIMMMYPPLAKVRYEELGDVFSNTKILALSLLQNWVIGPILMFVLAITFLHDYPEYMAGLIMIGLARCIAMVIVWNELAKGDTEYTAGLVAFNSIFQVLFYSVYAWFFLTVLPPLFGFKGSVVNIGIGDIAQSVFIYLGIPFLAGFLTRAALVKAKGKHWYHSEFIPKISPITLISLLFTIVVMFSLKGNLIVQIPMDVVRIAMPLLIYFVLMFLVSFYMAWKIKADYAKSASLAFTAASNNFELAIAVAIAVFGINSGAAFAAVIGPLVEVPVLISLVNLAVWFEKRFFRRNMPGSV
>NC_019729.1|WP_015175077.1|1406698_1407367_+|arsenical-resistance-protein-ArsH
MTTFTHKPRILFLYGSLRERSYSRLLAEEAARIIEDFGAEVRFFNPLELPIYGSVPDTHPKVQELRELSLWSEGQVWSSPEMHGNITGIMKNQIDWIPLSIGAVRPTQGRTLAVMQVSGGSQSFNAVNTLRILGRWMRMFTIPNQSSVAKAYQEFNEDGTMKDSPYRDRAIDVMEELYKFTLLLREQTDYLTDRYSERKEQAAKETIAVANRALEVNSAKSI
>NC_019729.1|WP_015175076.1|1405986_1406691_+|aquaporin
MDATAHRLACARPDCRREAIAEFLGTFILVFAGTGAVMVNKTSAGSVTHLGISFVFGAVVTAMIYALGHISGAHFNPAVTLGFWASGYFPKYKVLPYVLGQCAGAIAASKVLLITLGKVANLGATIPLNGNWLQSLILETVLTFILMFVILGSGLDRRAHIGFAGIAIGLTVGLEAAFMGPITGASMNPARSLGPALVGGIWEHHWVYWVAPIWGAQLAVAVYREISNGFRDFN
>NC_019729.1|WP_015175075.1|1405540_1405882_+|winged-helix-turn-helix-transcriptional-regulator
MVKNSPIAPPVADKSIAAGFHALSDPLRLQILELLREQELCVCDLCDRLSVPQSKLSFHLKALRDAALVRSRQEGRWIYYSLNLAQFVALEQYLAEYRRFSQILPARPCSDAG
>NC_019729.1|WP_015175086.1|1417104_1418421_+|urea-ABC-transporter-substrate-binding-protein
MTKRFDRRKFILYSSATLTSSLFLKACRTPTPTATPTASPTPTGTTPAASSGNTIKVGILHSLSGTMSISEKSVVDAEQLAIEEINKAGGVLGKQIEAIVEDGNSDWPTFAEKAKKLIDQDKVVTVFGCWTSASRKAVLPVFEEKNHMLWYPVQYEGQECSKNIFYTGAAPNQQIEPAVDWLLENKGKKFFLVGSDYVFPRTANTIIKAQLTAKGGELVGEDYIPLGGTEVTPIITKIKAALPDGGVIFNSLNGDSNVAFFKQLQGAGLGPDKYPSMSVSIAEEEVKAIGVEYLKGHYAAWNYFMTVESPANTKFVEAFKAKYGKDRVTNDPMEAAYIMVYLWKQAVEKAGTADDLEKVREAALGQSFEAPEGKVTMENNHHISKFVRLGEVRDDGLFNIAYATPQAVQPVPWNQFVAETKGFSCDWSDPAKGGKFKA
>NC_019729.1|WP_015175087.1|1418858_1420013_+|branched-chain-amino-acid-ABC-transporter-permease
MAILDGLFNGISIGAVLLIAALGLAIIFGLMGVINMAHGELMMLGAYTTFVVQNVFKGMGGFAFETYILFAIPLAFLVAALVGLILERGVIRYLYGRPLETLLATWGVSLILQQFVRSVSWVLVIGIAVFCLLFFGGLRLLKSRLDFDRIRNKIIALILPLSLGISWAVSAFLGQTYKLAVTQPWFGAQNVDVTAPQWLRGGIPLGNFQLPYARVFIIVLTGICLAGIYLFLQKSVWGLRIRSVTQNRSMSACLGIPTEQVDALTFALGSGLAGVAGCAISLIGSVGSNTGQNYIVDTFMVVVVGGVGKIVGSVVAAIAIGTANYLIGSGTLALMFAPVKPLADFFTFFATTSMAKVMVFALIMAFLQVKPGGIFPQKGRTVEN
>NC_019729.1|WP_015175088.1|1420040_1421183_+|urea-ABC-transporter-permease-subunit-UrtC
MQKTHQKPWLKEAAIVSAIALIFILLIPGILPDVRLNQLGRFLALAIAALGIDLIWGYTGLLSLGHGVFFAIGGYALAMHLKLQIPPTASSQLPEFMNLYGVTELPWFWQPFYSFPFSVFAVVLIPAILGALLGYLVFRNRIRGVYFSILTQAATIVFFNFFNGQQKLINGTNGLTDFKTLFGATVNDRDTQYIFYILTILFLAATYALCRWLTSGRFGRLLVAIRDDEIRLRFSGYNPTGYKVLVFAISAGLAGIAGALFTVQTGIISPKAMDIAFSIEMVIWVAVGGRATLSGAILGALLVNFGKSFLSEQFPEVWLFFQGALFLIVVTVLPDGLVGWLQHQGFDKIRSLFRRPKYASTYPSLEQDPQVQREKEELEH
>NC_019729.1|WP_015175089.1|1421369_1422092_+|TIGR00266-family-protein
MADIIDYKIYGDDLQLIEIELDPKEGVRAEAGTMTYMEGDIQMQTSTGGGLFQGFKRMLTGAGFFITTFVNAGNRKARVAFAAPYPGKVIPLDLGQLGGKFLCQKDSFLCAANGIEIEVAFTKRLGAGFFGGEGFILQKLQGDGLAFVHAGGTIVEKNLGVGEVLRVDTGCLVAFAPTVDYDIQFVGGFKNALFGGEGLFLAKMTGPGKVYVQSLPLSKLAERILAASPPPMSSSSSSFS
>NC_019729.1|WP_015175090.1|1422281_1423028_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MNGKVLEIENLTVSFDGFKAINGLNFSMDAGELRVIIGPNGAGKTTFLDSITGKVQPTEGRVLFKGQNLRKLSEDRISRLGIGRKFQTPRVYLNLTPRENLELSCSRHKNVFSTLFKPASTAEKRTVAGLLETIGLVAKADISAGLLSHGEKQWLEIGMLVAQSPDLLLVDEPVAGLTDEETMLTGELLISLAESHSVLVIEHDMEFVRQIARQVTVLHQGAVLCEGTMDEVQNDDRVIEVYLGKPDS
>NC_019729.1|WP_015175091.1|1423240_1423939_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLQVSNLNVYYGESHILRDVDLSVMAGQMVCLIGRNGVGKTTMLKTIMGLLQPRSGTIAFGGESIASKLTHQRARLGIGYVPQGREIIPRLTVKENLLLGLEAKPTKIKNPEVPDEIFDLFPVLKTMLDRLGGDLSGGQQQQLAIARALMGEPQLLVLDEPTEGIQPSIILDIEAAVRRVVATRGISVLLVEQHLHFVRQADWYYAMQKGGIVASGSTSELSDEVIQRFLAV
>NC_019729.1|WP_015175092.1|1424380_1424635_-|hypothetical-protein
MSPIKQRLLEAIERTPEPLLEQTLAFLEFLTSRTQSAIAPDFDSDFDSDTDSNDRILADLKASLHQAKAGQTFPVSELWDGINV
>NC_019729.1|WP_015175093.1|1424651_1425374_-|pentapeptide-repeat-containing-protein
MKKLTIMSIALLIFAATLELPKVGLQLSAIGQIETPQPIPTPQPIPTPQPIPTPQPQTPQPIPTPQQIQTPPIQTPQPKANDPKKLGYVSPEFAENFSQQQIDQINANVETLLLTQSCSRCDLRAVKLVNINLKNPILTGADLSDANLSGSRFEISDFVNTNLARTNLSGAELVGARISNANLRKANLTKTNLDGADLRFSDLRDANLSDANLRNANIDGASIDRASMAGTTMPDGRKNN
>NC_019729.1|WP_015175094.1|1425440_1425917_-|chemotaxis-protein-CheW
MTHANYNRRFRSKKQVTVRIAPKKIVSFELGKIYYAVPIERVERIVKNFNVYGLLPNGNSLLRHQEELITIINLSKIFPRSPSIAECKYLIICTLNKSDRLGIPLPDMPKILEITEESFCEIPELYRQQQLPPVIEKLIRAPDGSEVFYLNFDLFSEM
>NC_019729.1|WP_015175095.1|1426300_1429111_-|hybrid-sensor-histidine-kinase/response-regulator
MNDDDLNELIDAFTAECEEFLQSMETNLLAMEAAGLKERQAAVKEMFRAAHSIKGAGSMLGFQNVSAAAHRLEDCFVILRDRTDLSALEPTTVSVLLQGVDALKKITIESVQHSDVTTPDQTENLEAIAQIFAQFQAKYGKSEQPSVPAVSQSAAPETLKLIFEHQVPALFNRLETELSQASEADLAQSVTALNQVYYQLSGLAGMLQLPDFGKVAAALRDLIDSPDLTLQRLQSDGWAIAQNLQTARQQILEGRAIDIPEISPTPTLPLSPTPTPPEISPSPTVPPSSTLPVPNPQRPTIRVDLERLTELVNLVGELVINRTNLELQESELRDEVKRIRRNIVDLSQFGGQLREEYDRLSFADWRGGNGNSGLRKLAAAETESPMIASGKSSPVHAHFDILEMDRYTEFHSTAAEVIETAQAISQSATKLDTLAMKFERSTDQLRRITEQLRSRVMQLRVVSFSRAVDHLPRALREMCLTYDKEVNLLLVGRDTKIDESLLDALRDPLIHLVRNAFDHGIEMPEVRKASGKPASGQIEIEARHQGGQTIITVADDGKGIDPEMIRRKIVTKGLATEEQAQEFSIAELYDFLFWPGFSTTEGVSDLSGRGVGLDVVRTNLRTVRGTVKVDSRLGKGTSFIIKLPLLLSITDALMVKTDHNKIAVPLDAVEEILHIKASEVHIAGNQPMLWWREEFIRLVRMQDLLEYSVLPPDAPSPDPLTQEEIPVLVLASTEGMLAVAVERLIGQQEIVVKPLPPPLSKPRGVLGTTILGDGRVVNILDVDDLVGQPVVNSSIAAVSGKVHEIPPSSSKSPQILVVDDSYTIRQLLSLTLTRARYRVVQAKDGLDALEKLQNGLDCSLAIVDIEMPRMDGFELLRSIRSTERFAKIPVAMLTSRSGEKHRQMAMELGANKYFTKPYSEAQLLQAIPKLIHHSRI

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Crispr_ID: NC_019729_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_18

1422148-1422262

Orphan

Consensus_repeat	Method
GGCTTACCCAGAGACTGTTAACTGACGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_18

>merge|NC_019729|18|1422148-1422262|CRISPRCasFinder
GGCTTACCCAGAGACTGTTAACTGACGCACCTTATCAGAGAAAATCACCGCTGTCAGTCAGGTGCGTCAGCCAACAGATTTTCCGGCTTACCCAGACACTGTTAACTGACGCACC

>NC_019729|18|17|1422148-1422262|CRISPRCasFinder
GGCTTACCCAGAGACTGTTAACTGACGCACC	TTATCAGAGAAAATCACCGCTGTCAGTCAGGTGCGTCAGCCAACAGATTTTCC
GGCTTACCCAGACACTGTTAACTGACGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175087.1\|1418858_1420013_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NC_019729.1\|WP_015175093.1\|1424651_1425374_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_015175094.1\|1425440_1425917_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NC_019729.1\|WP_190274337.1\|1437252_1437441_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622951.1\|1409410_1410397_+\|arsenosugar-biosynthesis-radical-SAM-protein-ArsS	unknown	unknown	gnl\|CDD\|275025
NC_019729.1\|WP_015175095.1\|1426300_1429111_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_019729.1\|WP_015175089.1\|1421369_1422092_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NC_019729.1\|WP_015175083.1\|1414337_1415237_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_019729.1\|WP_190274336.1\|1416298_1416454_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175088.1\|1420040_1421183_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NC_019729.1\|WP_015175085.1\|1415360_1416089_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NC_019729.1\|WP_015175092.1\|1424380_1424635_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175091.1\|1423240_1423939_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NC_019729.1\|WP_150111646.1\|1429425_1435230_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223910
NC_019729.1\|WP_015175090.1\|1422281_1423028_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NC_019729.1\|WP_015175097.1\|1435308_1435812_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NC_019729.1\|WP_015175082.1\|1411517_1414082_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_019729.1\|WP_015175081.1\|1410496_1411222_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_019729.1\|WP_015175098.1\|1436069_1436435_-\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NC_019729.1\|WP_015175086.1\|1417104_1418421_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175087.1\|1418858_1420013_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.37951e-64
NC_019729.1\|WP_015175093.1\|1424651_1425374_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.23969e-23
NC_019729.1\|WP_015175094.1\|1425440_1425917_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	2.57866e-05
NC_019729.1\|WP_041622951.1\|1409410_1410397_+\|arsenosugar-biosynthesis-radical-SAM-protein-ArsS	gnl\|CDD\|275025	TIGR04167, radical_SAM_domain_protein, radical SAM/Cys-rich domain protein. Members of this protein family have an N-terminal radical SAM domain (pfam04055) and a C-terminal pfam12345 domain. The C-terminal region has several conserved Cys residues, one of which is replaced by selenocysteine in at least five bacterial reference genomes.	0
NC_019729.1\|WP_015175095.1\|1426300_1429111_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.05785e-172
NC_019729.1\|WP_015175089.1\|1421369_1422092_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.35366e-87
NC_019729.1\|WP_015175083.1\|1414337_1415237_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.31427e-30
NC_019729.1\|WP_015175088.1\|1420040_1421183_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	7.51003e-165
NC_019729.1\|WP_015175085.1\|1415360_1416089_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	2.13197e-46
NC_019729.1\|WP_150111646.1\|1429425_1435230_-\|PAS-domain-S-box-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.46392e-68
NC_019729.1\|WP_015175091.1\|1423240_1423939_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.69764e-133
NC_019729.1\|WP_015175090.1\|1422281_1423028_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.21062e-156
NC_019729.1\|WP_015175097.1\|1435308_1435812_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	2.91379e-28
NC_019729.1\|WP_015175082.1\|1411517_1414082_+\|GAF-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	5.60641e-42
NC_019729.1\|WP_015175081.1\|1410496_1411222_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.34922e-47
NC_019729.1\|WP_015175098.1\|1436069_1436435_-\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.38744e-33
NC_019729.1\|WP_015175086.1\|1417104_1418421_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0

>NC_019729.1|WP_015175089.1|1421369_1422092_+|TIGR00266-family-protein
MADIIDYKIYGDDLQLIEIELDPKEGVRAEAGTMTYMEGDIQMQTSTGGGLFQGFKRMLTGAGFFITTFVNAGNRKARVAFAAPYPGKVIPLDLGQLGGKFLCQKDSFLCAANGIEIEVAFTKRLGAGFFGGEGFILQKLQGDGLAFVHAGGTIVEKNLGVGEVLRVDTGCLVAFAPTVDYDIQFVGGFKNALFGGEGLFLAKMTGPGKVYVQSLPLSKLAERILAASPPPMSSSSSSFS
>NC_019729.1|WP_015175088.1|1420040_1421183_+|urea-ABC-transporter-permease-subunit-UrtC
MQKTHQKPWLKEAAIVSAIALIFILLIPGILPDVRLNQLGRFLALAIAALGIDLIWGYTGLLSLGHGVFFAIGGYALAMHLKLQIPPTASSQLPEFMNLYGVTELPWFWQPFYSFPFSVFAVVLIPAILGALLGYLVFRNRIRGVYFSILTQAATIVFFNFFNGQQKLINGTNGLTDFKTLFGATVNDRDTQYIFYILTILFLAATYALCRWLTSGRFGRLLVAIRDDEIRLRFSGYNPTGYKVLVFAISAGLAGIAGALFTVQTGIISPKAMDIAFSIEMVIWVAVGGRATLSGAILGALLVNFGKSFLSEQFPEVWLFFQGALFLIVVTVLPDGLVGWLQHQGFDKIRSLFRRPKYASTYPSLEQDPQVQREKEELEH
>NC_019729.1|WP_015175087.1|1418858_1420013_+|branched-chain-amino-acid-ABC-transporter-permease
MAILDGLFNGISIGAVLLIAALGLAIIFGLMGVINMAHGELMMLGAYTTFVVQNVFKGMGGFAFETYILFAIPLAFLVAALVGLILERGVIRYLYGRPLETLLATWGVSLILQQFVRSVSWVLVIGIAVFCLLFFGGLRLLKSRLDFDRIRNKIIALILPLSLGISWAVSAFLGQTYKLAVTQPWFGAQNVDVTAPQWLRGGIPLGNFQLPYARVFIIVLTGICLAGIYLFLQKSVWGLRIRSVTQNRSMSACLGIPTEQVDALTFALGSGLAGVAGCAISLIGSVGSNTGQNYIVDTFMVVVVGGVGKIVGSVVAAIAIGTANYLIGSGTLALMFAPVKPLADFFTFFATTSMAKVMVFALIMAFLQVKPGGIFPQKGRTVEN
>NC_019729.1|WP_015175086.1|1417104_1418421_+|urea-ABC-transporter-substrate-binding-protein
MTKRFDRRKFILYSSATLTSSLFLKACRTPTPTATPTASPTPTGTTPAASSGNTIKVGILHSLSGTMSISEKSVVDAEQLAIEEINKAGGVLGKQIEAIVEDGNSDWPTFAEKAKKLIDQDKVVTVFGCWTSASRKAVLPVFEEKNHMLWYPVQYEGQECSKNIFYTGAAPNQQIEPAVDWLLENKGKKFFLVGSDYVFPRTANTIIKAQLTAKGGELVGEDYIPLGGTEVTPIITKIKAALPDGGVIFNSLNGDSNVAFFKQLQGAGLGPDKYPSMSVSIAEEEVKAIGVEYLKGHYAAWNYFMTVESPANTKFVEAFKAKYGKDRVTNDPMEAAYIMVYLWKQAVEKAGTADDLEKVREAALGQSFEAPEGKVTMENNHHISKFVRLGEVRDDGLFNIAYATPQAVQPVPWNQFVAETKGFSCDWSDPAKGGKFKA
>NC_019729.1|WP_190274336.1|1416298_1416454_-|hypothetical-protein
MAQNRNIETRFLVLPRLLMLGVRRQQGISHLHRRLSKQVTIALRFEYDRHL
>NC_019729.1|WP_015175085.1|1415360_1416089_+|HAD-family-phosphatase
MTLKAVLFDFNGVIVNDDPIHEKLIEQLMLDENLQLKRGEFREVCLGRSNRACITALLERRGRFLTETYLDRLLQRKAEAYKAQIDTLEKLPIYPGLAEFIDKVRAAGLKMAVVSGAMRSDIELVLDRAGLAANFELIVAGDDLTASKPAPDGYLLAVELLNQKYPHFNLQPIECLAVEDTFAGIEAAKKAGIQVAGVTHTYPFHMIQRQANWTVDYFADLELDRVAALCSIAPTEPAAKNT
>NC_019729.1|WP_015175083.1|1414337_1415237_+|methyltransferase-domain-containing-protein
MAVGKDTIFERFLSPLMRLAIDEEALKRLYEGIDWERAGDRYRQPNLVYPEYYSSQNFHGIKGGYLNPSAAVSYDPITQYVLPPHETVVRQGLIDAVRVKPRRIIDLGCGTGSTTLMLKQAFPEAEVVGLDLSPYMLVVAEMKAQKAGLNIQWLHGNAESVAFPDASFDLVAASLLFHETPPAVSRAILRESFRLLKVGGQVAILDGNQKTLRQTEWLTDMFEEPYIKSYAAGSLDAWAGAAGFAAVQTHEHWWVNQVTQGVKPLPGEDLEQAKVARGWNWGDRTPDFDGDLPGIPAPA
>NC_019729.1|WP_015175082.1|1411517_1414082_+|GAF-domain-containing-protein
MTDDYQGWEDRSTVALFSETGLTTWLILILPNDQYRLMNLIRREHLMMQNPANQAGSVSAPPPHQAKKLRHFWENISNSAQSRWQQAQSLWQHRRQRRHLLTLLILGTTALTISTTACISYFFVRGLILDNLKQIALLKLEKGTDEIDRWLSSRKAEIETIAYDPRVGTLNWQLVEPRLQGEIYRLKEYFVLSLTQPDGSFINTLGNRGNSKDRQHFKKAIAGQINVSDPLIGRTTKVSTIVISAPIWALPPAPNQVIGVLSGSIKLDRVTSVANSLLYGSDSYAFALNSKGVPIVHPNNNLIGNTDRPAPSFLQSQDPALSTIARQMIDRQTNIELVKIDNKWVYVAYAPLKEVNWSMALVIPRENIESQLQALNLLTSVVAGLLVPAMLAAIWLIYSSENNRAQAEREAMLNRIAGRIRASLELDKIVQSTVEEIVSLLHLELAAFGWYKPQEKILQILWECCPSDSATQAIKFEPYFLENVLVRSGQGEPILLSSDTWAKGVSQPPELKANSYLAVPVQTQNQPQGYLICSHATHWLWSREEIQLLKAVADQLAIAITQAHLYSQTQDQVKLLNSALNELKKTQTHLVQSEKMSSLGQMVAGIAHEINNPVNFISANLPHTSKYTKDLLELVSLYKEAFPEVPQEIADFTEEIELEFIEEDLPHILNSMKIGSERIRSIVLSLRNFSRLDESDKKLADIHEGIENTLLLLSNRIKNRIYIVKKYGKVPSVECYPSQLNQVFMNLLSNAIDALNDIERLDKIITISTGVVREHGARFLKVAIADNGPGIADSVKDQIFNPFFTTKEVGKGTGLGLAISYKIVVDGHGGSITISQPPGGGTEFVVKIPISNGK
>NC_019729.1|WP_015175081.1|1410496_1411222_+|TVP38/TMEM64-family-protein
MNDSRSPDENPPPSNRWKLILGIGLAVALIVAAKFFNFQGILRNALESIASLGPWGPAAFILIYIVATVLFIPGSLLTLGSGVLFGVVGGSVCVSIGSVLGATCAFLVGRYLTRDWVSKQIEDNQKFKAIDSAVASEGWKIVLLTRLSPIFPFNLLNYAFGVTQVSLKDYFFASWIGMIPGTVMYVYIGSLAGSLAALGSSGRSRTAAEWALYGIGLLATIALTVYATRLAKKALDEKIYP
>NC_019729.1|WP_041622951.1|1409410_1410397_+|arsenosugar-biosynthesis-radical-SAM-protein-ArsS
MIQTAVTPFKNKLHSALTKKQITVLQINLGKRCNLACTHCHVEASPKRTEELSPEICDQLIEIIRRFPQIQTVDLTGGAPEMLYGFKPLAEAARAAGKEVIVRSNLTIYFEKGFEDIPEYCAQHQLRIVASLPCYQADNVDKMRGSGVFDSSIRALQKLNQLGYGKNPNLTLDLVYNPQVPATDKFSLTPEQGKLEKDYKVYLAEHFGICFNQLFAITNLPVGRTKFHLEHKKLHKPYLGFLEDNFNRGTLEHLMCRNELSIDYLGNVYDCDFNQMENLPAKTGSGEKINTAKLLASGSLDVIQEVQTAAYCYGCTAGSGSSCGGTLI
>NC_019729.1|WP_015175090.1|1422281_1423028_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MNGKVLEIENLTVSFDGFKAINGLNFSMDAGELRVIIGPNGAGKTTFLDSITGKVQPTEGRVLFKGQNLRKLSEDRISRLGIGRKFQTPRVYLNLTPRENLELSCSRHKNVFSTLFKPASTAEKRTVAGLLETIGLVAKADISAGLLSHGEKQWLEIGMLVAQSPDLLLVDEPVAGLTDEETMLTGELLISLAESHSVLVIEHDMEFVRQIARQVTVLHQGAVLCEGTMDEVQNDDRVIEVYLGKPDS
>NC_019729.1|WP_015175091.1|1423240_1423939_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLQVSNLNVYYGESHILRDVDLSVMAGQMVCLIGRNGVGKTTMLKTIMGLLQPRSGTIAFGGESIASKLTHQRARLGIGYVPQGREIIPRLTVKENLLLGLEAKPTKIKNPEVPDEIFDLFPVLKTMLDRLGGDLSGGQQQQLAIARALMGEPQLLVLDEPTEGIQPSIILDIEAAVRRVVATRGISVLLVEQHLHFVRQADWYYAMQKGGIVASGSTSELSDEVIQRFLAV
>NC_019729.1|WP_015175092.1|1424380_1424635_-|hypothetical-protein
MSPIKQRLLEAIERTPEPLLEQTLAFLEFLTSRTQSAIAPDFDSDFDSDTDSNDRILADLKASLHQAKAGQTFPVSELWDGINV
>NC_019729.1|WP_015175093.1|1424651_1425374_-|pentapeptide-repeat-containing-protein
MKKLTIMSIALLIFAATLELPKVGLQLSAIGQIETPQPIPTPQPIPTPQPIPTPQPQTPQPIPTPQQIQTPPIQTPQPKANDPKKLGYVSPEFAENFSQQQIDQINANVETLLLTQSCSRCDLRAVKLVNINLKNPILTGADLSDANLSGSRFEISDFVNTNLARTNLSGAELVGARISNANLRKANLTKTNLDGADLRFSDLRDANLSDANLRNANIDGASIDRASMAGTTMPDGRKNN
>NC_019729.1|WP_015175094.1|1425440_1425917_-|chemotaxis-protein-CheW
MTHANYNRRFRSKKQVTVRIAPKKIVSFELGKIYYAVPIERVERIVKNFNVYGLLPNGNSLLRHQEELITIINLSKIFPRSPSIAECKYLIICTLNKSDRLGIPLPDMPKILEITEESFCEIPELYRQQQLPPVIEKLIRAPDGSEVFYLNFDLFSEM
>NC_019729.1|WP_015175095.1|1426300_1429111_-|hybrid-sensor-histidine-kinase/response-regulator
MNDDDLNELIDAFTAECEEFLQSMETNLLAMEAAGLKERQAAVKEMFRAAHSIKGAGSMLGFQNVSAAAHRLEDCFVILRDRTDLSALEPTTVSVLLQGVDALKKITIESVQHSDVTTPDQTENLEAIAQIFAQFQAKYGKSEQPSVPAVSQSAAPETLKLIFEHQVPALFNRLETELSQASEADLAQSVTALNQVYYQLSGLAGMLQLPDFGKVAAALRDLIDSPDLTLQRLQSDGWAIAQNLQTARQQILEGRAIDIPEISPTPTLPLSPTPTPPEISPSPTVPPSSTLPVPNPQRPTIRVDLERLTELVNLVGELVINRTNLELQESELRDEVKRIRRNIVDLSQFGGQLREEYDRLSFADWRGGNGNSGLRKLAAAETESPMIASGKSSPVHAHFDILEMDRYTEFHSTAAEVIETAQAISQSATKLDTLAMKFERSTDQLRRITEQLRSRVMQLRVVSFSRAVDHLPRALREMCLTYDKEVNLLLVGRDTKIDESLLDALRDPLIHLVRNAFDHGIEMPEVRKASGKPASGQIEIEARHQGGQTIITVADDGKGIDPEMIRRKIVTKGLATEEQAQEFSIAELYDFLFWPGFSTTEGVSDLSGRGVGLDVVRTNLRTVRGTVKVDSRLGKGTSFIIKLPLLLSITDALMVKTDHNKIAVPLDAVEEILHIKASEVHIAGNQPMLWWREEFIRLVRMQDLLEYSVLPPDAPSPDPLTQEEIPVLVLASTEGMLAVAVERLIGQQEIVVKPLPPPLSKPRGVLGTTILGDGRVVNILDVDDLVGQPVVNSSIAAVSGKVHEIPPSSSKSPQILVVDDSYTIRQLLSLTLTRARYRVVQAKDGLDALEKLQNGLDCSLAIVDIEMPRMDGFELLRSIRSTERFAKIPVAMLTSRSGEKHRQMAMELGANKYFTKPYSEAQLLQAIPKLIHHSRI
>NC_019729.1|WP_150111646.1|1429425_1435230_-|PAS-domain-S-box-protein
MLNFMIKILYTSIATTFTLTLPDFSQSVVAGAANCIICACYFAIAWLISLGLWRNRKFGFDIFATVTAGIFWSCAFGHSGHAAEYLGLPHSPVAQTVWDWITVIPAIAFLSLSNRYDFLVGSTQILNSKKQTEQALSETNQRFHAIFDQAFQAIALLEPDGTVIEANQTAIKLGDFPASEVLGLKFWLTSGWASSPTNQQRLKRNIQQVSAGNFVREEYEITGANNQVTVIDLSFKPLLNETGEVFQILAEGREITKRKQAESALQQLSAELEQRVNERTEQIRQTNTQLEQEIIDRTAAQEQLKASEQFLNNILNSIPDPIYVKDQQHRWITLNDAFCQYIGYSREELIGKCYDQFLSKEEAEKYREKDELVFLTNTSIEIQKTITDPAGNTRFLSAQKSTFVDTDGRKFLVSAMRDITKRVQMEEQLRQTLAEAESSQNLLRTVIDATPDCIFVKDRNLRYTLVNAGFAAAFGKTQAEIIGKDDAEIGISVDRIFANFHAQSDSENQIQNFRAGNHLAPGSNDLATLADGKIHTFDTQKLPLKDAEGNILGMVGFARDITQRRKSEQELLRFKAILETTTDWVGIADSQQRTIYLNRAAREMLRVGENADLAGFSISDLTSPKSIDTLIDVGIPAACREGAWSGEAMWRTLDGKEIPVSQVIIAHKSEKGEIEFLSTIARNITESKRTEEALQQNLQMLDLASDALIVRDLDGTINYWNQGAERMYGWTKKEALGKLTHSLLHSIFSQPLAAISAQLEEHNYWEGEVIHTTNYGTHITVFSRWNLQRDEQGKPKAILETNNDITERKQAEIEKQRLISIVESSSDFIGTATLEGEATYLNAAGMKLAGLANIEEVKSKSVYDIFCTEDVKILKEEILPATVRDGFWQGEFRLRNFQTGENFPVDFTLFTVKNPETGEPMGLATVTRDISDRKRAEEMLRDRERLFRAIFDQSFQLIGLLKPDGTVLEVNQTALAVAGLEREDFLGTQFVDNLWWQISPEAKQKVQAALAKAAAGEVVRYEADVLVAGGAVITVDFSLKPIVDDSGKVVLLIPEARDISDRKALERELVLRQTRFDAFFTAAPASMFIFDEQLRFVQVNEKLAETTGVSVAEHLGKTVREVIPEMVDTLQPMLQQILATNQPFLNVEVSGTTVNKPGVVRDWLASYFPLPGSDGKPIGVGGVAIEITDRKKAEEELDRFFTLSLDLVCIVDFEGKFKRLNPAWGTTLGYTLEEVENQPFINFVHPDDREETTAEAGKVYDGAEVQFFENRYRCKDGSYKWLSWKVRPEAEQKLMYAVARDVTETKQAMVQLEKTTAQLASSEDQFRQQTNLLQLLIDSIGDGIIAADEKGNFLLFNPAAEDIFGMGATDGLLNEWSARYGLFLPDTVTPYPPAEIPLARTVRGEAFDEVELFTRHAGKPEGLWVKINGRPLKDETGALKGGVVVCRNVTEQRASQQRMQQLAEAQERLLQELKTRQNALDESAIVSETDLQGVITYVNDRFIEISGYSMGDLLHRNHRIINSGYHPKSFFEEMWVTLSRGLVWKGEIKNRRKDGSFYWVDSTISPIFDTSGTIVKYIAIRFDITERKEAEERLEKLAAERKAEADSLTQQVLKLLGEIKGAAQGDLTVRAEVTNDVLGAVADSFNFLIGSLRKVVTGIQTLAEQVTSATGESINNTSQLTQQAEIQAAQISAIMREIERIVNSIREVRDVSVRAETVAQQSSQTAEVGGMAVDRAVEGINGLRLTIASTSKMMKRLGESSQQIGKIVTSISQLASQTNLLALNATIEAARAGEQGLGFAVVAEEVRKLAERSAGATEEISEIVGTIQEEISRVMKAMESGTLEVVEGTKLASEAKTHLNAIIEVSREMNALVQNITIASAKQTVSAEGIANSMQQVNEIANTTAQKGADVKASLDELSGSLGQLQKSVANFRS
>NC_019729.1|WP_015175097.1|1435308_1435812_-|purine-binding-chemotaxis-protein-CheW
MKITAPPPGGNQTSATKQFLLFGQGGSLFGIELEAVREVLSLREQPISLVPNTQPFLLGLTNLRGEILAAADFGVFVGIESVDTYHPNSRILVVEASDPRDVRLLSKMRLGLAVSRVEGVLTLNPDRIVSALDVSPDLAPFLKGLYNSEGRLLMIVDVEAIAHSERW
>NC_019729.1|WP_015175098.1|1436069_1436435_-|response-regulator
MSKVLVVDDVKSELEIICRILQDAGLEVIRAGDGEEAIAMIRKKCPALVVLDVVMPRMNGFEVIRELRGDRATAKLPVVFCTHKNTEIDKAWGTDLGADAYVSKPFEPQQLVHIVQRLLLA
>NC_019729.1|WP_190274337.1|1437252_1437441_-|hypothetical-protein
MTASCSSLFGWAHNQAQGWRSPAGSSFGEPNTSLLGKMGLSIGPLISNLLAWELFLSLLLSA

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Crispr_ID: NC_019729_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_19

1581001-1581083

Orphan

Consensus_repeat	Method
TAGAGTCCATCTGAAATCTAAAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_19

>merge|NC_019729|19|1581001-1581083|CRISPRCasFinder
TAGAGTCCATCTGAAATCTAAAATCTCAAATCACCTGTTTATGCCCCACCACCAGCGTAGAGTCCATCTAAAATCTAAAATCT

>NC_019729|19|18|1581001-1581083|CRISPRCasFinder
TAGAGTCCATCTGAAATCTAAAATCT	CAAATCACCTGTTTATGCCCCACCACCAGCG
TAGAGTCCATCTAAAATCTAAAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175209.1\|1590533_1591487_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NC_019729.1\|WP_015175191.1\|1562441_1567895_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019729.1\|WP_015175207.1\|1589414_1589699_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|176950
NC_019729.1\|WP_015175198.1\|1578370_1579513_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015175208.1\|1589637_1590159_+\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224750
NC_019729.1\|WP_015175200.1\|1581213_1581804_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_019729.1\|WP_015175202.1\|1582626_1583265_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_019729.1\|WP_190274418.1\|1586597_1587647_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_019729.1\|WP_041622402.1\|1573188_1573827_+\|DUF4291-family-protein	unknown	unknown	gnl\|CDD\|379483
NC_019729.1\|WP_015175206.1\|1587998_1589333_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224938
NC_019729.1\|WP_015175194.1\|1571489_1572638_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|215310
NC_019729.1\|WP_015175203.1\|1584014_1584896_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NC_019729.1\|WP_015175204.1\|1585436_1586438_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_019729.1\|WP_015175199.1\|1579663_1580494_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|319862
NC_019729.1\|WP_041622401.1\|1570403_1570628_-\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NC_019729.1\|WP_015175189.1\|1560350_1562027_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|377524
NC_019729.1\|WP_015175201.1\|1581974_1582514_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|214500
NC_019729.1\|WP_015175196.1\|1573840_1574974_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|215469
NC_019729.1\|WP_015175193.1\|1570787_1571378_+\|chromophore-lyase-CpcT/CpeT	unknown	unknown	gnl\|CDD\|368789
NC_019729.1\|WP_015175197.1\|1575561_1578219_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175209.1\|1590533_1591487_+\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	1.74845e-141
NC_019729.1\|WP_015175191.1\|1562441_1567895_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_019729.1\|WP_015175207.1\|1589414_1589699_+\|30S-ribosomal-protein-S16	gnl\|CDD\|176950	CHL00005, rps16, ribosomal protein S16.	2.40218e-41
NC_019729.1\|WP_015175198.1\|1578370_1579513_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.77533e-48
NC_019729.1\|WP_015175208.1\|1589637_1590159_+\|KH-domain-containing-protein	gnl\|CDD\|224750	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only].	7.92484e-20
NC_019729.1\|WP_015175200.1\|1581213_1581804_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	3.40842e-19
NC_019729.1\|WP_015175202.1\|1582626_1583265_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.02429e-53
NC_019729.1\|WP_190274418.1\|1586597_1587647_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	1.96222e-164
NC_019729.1\|WP_041622402.1\|1573188_1573827_+\|DUF4291-family-protein	gnl\|CDD\|379483	pfam14124, DUF4291, Domain of unknown function (DUF4291). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 190 and 214 amino acids in length. There are two conserved sequence motifs: VYQAY and RMTW.	5.23466e-100
NC_019729.1\|WP_015175206.1\|1587998_1589333_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	1.74532e-49
NC_019729.1\|WP_015175194.1\|1571489_1572638_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|215310	PLN02572, PLN02572, UDP-sulfoquinovose synthase.	0
NC_019729.1\|WP_015175203.1\|1584014_1584896_-\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.16149e-99
NC_019729.1\|WP_015175204.1\|1585436_1586438_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.34506e-173
NC_019729.1\|WP_015175199.1\|1579663_1580494_+\|GUN4-domain-containing-protein	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	3.48098e-64
NC_019729.1\|WP_041622401.1\|1570403_1570628_-\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	7.37246e-22
NC_019729.1\|WP_015175189.1\|1560350_1562027_+\|mechanosensitive-ion-channel	gnl\|CDD\|377524	pfam05552, TM_helix, Conserved TM helix. This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with pfam00924.	1.25335e-09
NC_019729.1\|WP_015175201.1\|1581974_1582514_+\|GAF-domain-containing-protein	gnl\|CDD\|214500	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.	1.26422e-05
NC_019729.1\|WP_015175196.1\|1573840_1574974_+\|glycosyltransferase	gnl\|CDD\|215469	PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase.	2.3352e-138
NC_019729.1\|WP_015175193.1\|1570787_1571378_+\|chromophore-lyase-CpcT/CpeT	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	4.07879e-102
NC_019729.1\|WP_015175197.1\|1575561_1578219_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	4.59053e-70

>NC_019729.1|WP_015175199.1|1579663_1580494_+|GUN4-domain-containing-protein
MSNCPVCGAEYIEEKAEFCSICGWDLTPYPQRAKPSKTYLKKEQVRLQWAKQMWELARNQQNWSAKFDELQGELQQNAIARTYLQSQLEWVLYRLEQLNPELIVSTLLRLEDKIGAIPDSTPAISEVGMDYRQLTKLLETGKWRKADEHTWEILLQIAVREDEGWLSAADIDSFPPTDLRTIDQLWQQYSSGRFGLSVQQQIWETSGGNYTEFCDRVGWRVKENWKYYSELSFNEDAPPGHLPVTAWRQRACYGAGKLTAAENFARIAAKLATGDR
>NC_019729.1|WP_015175198.1|1578370_1579513_+|hybrid-sensor-histidine-kinase/response-regulator
MSYLSVPNATKADRILVVDDAPDNVLLVQTILEEEGYEISTAENGFSALSQIDKSAPDLVLLDVMMPGMDGYEVTKRIRQNKELPFIPILLITAHDSASVVQGLDMGADDFIRKPVEMDELLARVRSLLRLKHSVDERNSIALQREDFVSRLAHDLRTPLVAADRMLTLMQQGALGEISIPMRDAFGTMVRSNQNLIAMVNMLLEVYRYEAGRKSLSFAAVDLRQLITEVAEELAPLADAKGLSVNLDLTESAESAPIAKYPGDRLELHRLLTNLIGNAIKFTDSGSIDVSLKAANSPAYTSFKNQPLAWVIIEIQDTGAGISSTEQAKLFERFGPGTHKKSGTGLGLHLCRQIVEAHRGTIQVKSELGKGSLFTIRLPC
>NC_019729.1|WP_015175197.1|1575561_1578219_+|adenylate/guanylate-cyclase-domain-containing-protein
MTFSNTGSVLATLTQVNFMGALTSRVKSLPVPELVCLLDFITAEFQQFIRAMDLINNEALESLLEQLLDAFTVKIGQILQADRTTIFLVDSNKNQLWHKTVDPLTGEDVEVRLPMDAGILGYVATTGKSINVAEARSHEYFNSEVDEPPGYQIGTILCMPIFSSKSQHEPVAVVRLLNKAGNVSFSEEDEQQFQAFADSIGIILESCQSFYVVARNQRGVAALLRATTTLGQSLDLETTLRSVMDQARDLMQADRSTLFLLNRETNELWTKVAKADGTTMMEIRIPANRGIAGYVASTGQPLNITDAYDDPRFDPSTDQQTGYRTRTVLCMPVHNAKGELIGVTQLINKNQGTFTPSDEEFLRAFNSQAGMALQNSQLFQNVMVEKQYQKDMLQSLSDAVISTDLKGRVVTINEAALELLGCPVNQAKSKHNLQIWEDKLVNRYVWEVVPIDNLQFRLEDSLKNAARHYVPEQSLTVGLLVEKTLNSQQKEEEGEESYILAVPDRAEPNLYYAWGENRAWTEEVALAELANAQSLFALRNSALYHPYCPLPIPASGIKVIERSLNLTVNPLLNPEGGVRGGLVVLEDISREKRMKNTMYRYLTPGVVDKVMALGEGALMVGERKEVTILFSDIRGYTTLTENLGASDVVSLLNQYFETMVEAVFHYEGTLDKFIGDALMAVFGAPLPLNPPESHGWMAVQSALDMRRRLKEFNDSRPGADPFRFGIGISSGEVVSGNIGSQKRMDYTVIGDAVNLSSRLEQLTKEYGCDIILSEFTYSLCREGIWVRELDKVRVKGKNQPVGIYELLQNSSEPIDGETVRFLELYSNGRDAYIARNFHKAINCFEAALAMRPSDRPVEVHLDRSLSYLEVPPPEDWDGVHTMTTK
>NC_019729.1|WP_015175196.1|1573840_1574974_+|glycosyltransferase
MKIALFTETFLPKIDGIVTRLIHTVDHLQRAGEQVMIFSPDYGIKEYKGARVYGVEGLPLPMYPELKMALPSPAVGRQLQQFKPDIIHVVNPAILGLGGIYYGKKLNIPILASYHTHLPKYLHHYGFGVLEPLLWELLKGAHNQAELNLCTSTAMVEELRIHGIDRVDLWQRGVDTEMFVPELASREMRSRLSANNPDSPLLLYVGRLGAEKEIERIKPVLAAIPDARLALVGDGPHRQTLEQYFAGTPTNFVGYLKGQELARAYASADAFIFPSRTETLGLVLLEAMAAGTPVVAARSGGIPDIVTDGVNGYLFDPADEEGALAATQRLFANPEERETLRQNARKEAERWGWAAAAAQLQRYYQSVVFAQSVPTAA
>NC_019729.1|WP_041622402.1|1573188_1573827_+|DUF4291-family-protein
MTLLTEPYLNQASKWPKTGRHILAQFDEHTVVVYQAYRPAIGIFAAEQGYFGGEFSLNRMSWIKPNFLWMMYRSAWGTKPGQEVILAVWLKRSAWDEILASAVHSNFVPAVYGSEKEWQQAVKNSAVRLQWDPDRHPSGAKLERRAIQLGLRGSVLASYAGEWIVKIEDISQFVQQQRQYNGGDRTQLLTPCETVYPVIDPDIFQRLGLSAP
>NC_019729.1|WP_015175194.1|1571489_1572638_+|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVIGGDGYCGWATALYLSNKGYEVGILDSFVRRHWDLELCSDTLTPIAPIQQRLQRWQDLTGKSIDLFVGDITNYDFLSKSMRKFAPEAIVHFGEQRSAPFSMIDREHAVLTQVNNVVGTLNLLYAIREDFPDCHLVKLGTMGEYGTPNIDIEEGYITIEHNGRKDTLPYPKQPGSFYHLSKVHDSHNIHFACKIWGLRATDLNQGVVYGVLTDETGMDELLINRLDYDGVFGTALNRFCIQAAIGHPLTVYGTGGQTRSFLDIRDTVRCVELAIANPAEAGQFRVFNQFTEQFSVGDLASLVQKAGMAMGLKVEINNIENPRVEKEEHYFNAKNTNLLDLGLQPHYLSDSLLDSLLNFATKYQHRVDKNQILPKVSWK
>NC_019729.1|WP_015175193.1|1570787_1571378_+|chromophore-lyase-CpcT/CpeT
MSHSTDIVTLARWMAADFSNQAQAFENPPFFAHIRVCMRPLPIEVLDGISLYLEQAYDIELNVPYRVRVLKLVPAGDRIDIENYAIENEEQFYGASRDPQRLQEIKTAQLTLLPGCTFITQWTGKSFKGFVEPGKGCAVVRNGKKTYLDSEFEIDQDKFTSHDRGRDPETDAHVWGAQAGPFEFTRRASFADEVPV
>NC_019729.1|WP_041622401.1|1570403_1570628_-|KTSC-domain-containing-protein
MKLQPVESSMIKAVGYDETTSTLEVVFNSGKTYLYSEVPNNVYLELMDSDSKGSYMRDCVIDCYPYQQVKKRRR
>NC_019729.1|WP_015175191.1|1562441_1567895_+|AAA-family-ATPase
MNAIANLPDYQITEQLYTGTRTLVYRGIRTSDQQPVAIKLLRNEYPNFNELVQFRNQYTIAKNLDFPSIIKPLTLEVNGNGYALVMEDFGGISLSDYLQIATDEKPQYQYLPLGEFLQISLKITETLHYLYQNRVIHKDIKPANILIDPATKEIKLIDFSIASLLPRETQEIQNTNHLEGTLAYLSPEQTGRMNRGIDYRTDFYSLGITFYELLTGTLPFRSEDAMELVHCHLAKQPIPIHQINSEIPLALSEIVSKSIAKNAENRYQSALGIKHDLEICLDRLQTTGTIEPFEIGKRDISDRFLIPEKLYGREAEVNQLLNSFDRVANGTTEIILVAGFSGIGKTAVVNEVHKPIVRQRGYFIKGKYDQFQRNIPFSAFVEAFRDLMGQLLSESEEQLQTWKTNILAALGDNGQVLIDVIPELENIIDRQPPSLELSGTAAQNRFNLLFQKFVKVFTSKEHPLVMFLDDWQWADSASLNLLSLLTQQDTGHLLILGAYRDNEVSPVHPFILTVEELLKTGATVNTITLPPLRESDINRLVADTLNCELSLAQPLTKLVYQKTKGNPFFATQFLKALHDDKLITFNWDIQHWQCDIAQIKALAITDDVVEFMALQLQKLPIPTQDVLKLAACIGAQFDLHNLAIVSQQSETETATVLWRALQGGVILPVSNVYKFYQVEGNNNLSPEDENANKQNARYRFLHDRVQQAAYSLIPSDQKQATHLKIGQLLQQNLSEIEKEDKLFDIVGHLNLGIRLITQAQEREALARLNLAAGQKARNSTAYSAARSFVQIGIELLTPDCWQTQYELTLNLYVAAAETAYLNADFDGMEEMADLVLRSATTILDKVKIFEIQINALTAQSQMLKAIAVGRNALTQLGVEFSSEPDEALTGKALQTLADRLQGKQIEELINLPVMSDPRTIAAMQLLAMLFSPIFAGNPALLPLHGSTMVSLSLQFGNAPASTIGYASYGMVLSVFLGEVEKGYCFGRVALSVLNQLNVREFKSITLLFFGCFLQHRQEALRAVIITAKEGYMSGIETGDFLNAGYNISVYFDDSFFAGVNFSDWEPEIENYCAVLAQVKQDSPLGYLKMKKQMAQSLIEVVNQPDLLIGTAYDETVMIPKHHQDHEFTALAFLYIYKLILGYLFGNYTNALEYIAQANLYLMAAAGVIHTPVFHFYAGLTYLAVFSTQSEIERSKTLHLVETHQTTLAQWARYAPMNHQHKVNLVEAEKCRLLGKNYEAGDLYDRAIAGAKENQYIQEEALANELAAKFYLEWGKEKFASGYMEEAYYCYTRWGAKAKVAYLEQHYPQLLEAILQPTKRAIISEGTISPTLMRSLTSTSNSNSQNLWLDFPAVMKAAQAISQEIELEKLLATLMQIAIAHAGAQTGLLAIDREAKWLVVAKATENQTEKRHIPLAECQELPQSLIYSVARSQTTAVFDNLSASTQFAGDRYIITQQPKSALCIPISKQGKSSAILYLENNLTVGAFTSDRIETLQILSAQAAISIENARLYEQVENYSQTLEAEVERKTEELSQKAFDLEHTLKNLQQTQAQLIQSEKMSALGQLVAGIAHEINNPVTFIHSNLPPTENYLKSLLNLLELYQQEYPKKSSAIKARIEEIELAFITEDLTKILQSMKVGSERIKQIILSLRNFSRLDEADMKSVDLHAGLESTLLILQNRFQESDNQPKVQLIKEYGNLPRVTCYASEMNQVFLSIISNALDALKQVSKTNKQPLIKIQTEVIEKEWVRIAIADNGSGIPTQIQKRIFEPFFTTKPVGSGTGLGLSVSYAIIKKHGGKLTCNSTVSSGTTFVIEIPIN
>NC_019729.1|WP_015175189.1|1560350_1562027_+|mechanosensitive-ion-channel
MNETWQEITQPISGPIAALSDRILAQAQPGNPLTDAERGINNFIQGSNIENLLWAVGILLIGLIVSALVSSVVGGLLKKTTLDNRLAAWITGRPEGAGSPQVEKWISAAVFWIIFVFFLIAFFNRLNLTAVSQPLNTFLNQITGFLPKLAGALIWLGIAWVLATVAKMAVSRAMRAFSVDERLNQEVGAAPAERPLLLSDTVANALYWFIFLLFLPLILDSLEMQQALLPVNNLLNQILAAIPKILEAVLIGFVGWLLAVVVRRIVTNLLAAAGADGLGARFGISRTSGGQSLSWIVGTIVYVLILIPTAIAALNALDIQAISQPAVAMLNDILGAVPKIFTAALILAVAYILGRWIGDLVTNILTGIGFNNVFSWLGVQPPKQPLRLPQSSIDPEATILQEPELPTRTPSEFVGIVVQVGIMLFAVVAATDVLQIPALTAIVSGIVLVAGRVLAGLVVFAIGLYLANLAFSLIASSGTRQARLLGQTARIAIIAFVSALALQQMGIGSDIVNLAFGLLLGAIAVGIALAFGLGGREIAADQIREWLASFKQDKTPRL
>NC_019729.1|WP_015175200.1|1581213_1581804_+|YdcF-family-protein
MWLRINSNTQRYKRLNTSRSFWFLVGLLMACWFGYQHVKSEFQRPQALLVLGGATEREVFAAKFARSHPELPIWVSSGSNPEFAEWVFSEAGIESDRVHLDYRAVDTVTNFTTLVDELKAQGIESVYLITSDDHMRRAQIIGEIVLGSRGISFKPVAVPSGRTPEPMQKAVRDGARAILWLTTGYTGANFTQARIQ
>NC_019729.1|WP_015175201.1|1581974_1582514_+|GAF-domain-containing-protein
MTDQILPQVLEQILSDSKTADAVFSALVPALGEVLNCDRVFLYLRNPETQMGRVPYCWRRNSNYPEVWDAEWKKEPESLGEEDPLFAAALRTEPSIFVEDVETANPEVVNKNFEAKEFGHRALIHAHLCADGLLWGVLQPCMFDRPRVWTDFDRQVIAAVTEKISPLAVAYVRGIVQAQ
>NC_019729.1|WP_015175202.1|1582626_1583265_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSKSREPVESLLLYYLFKWSIVSPMLHLYFRGRIYGAENVPTEGPLVVVSNHASDFDPPILSNCMRRPVAFMAKEELFKVPILKQAITLYGAYPVKRESADRSAIRSAINSLENGWATGVFLQGTRTPDGRITEPKLGAALIAAKAKAPLLPVSLWGTHAIASKGSGLPRPVPLTVRIGKLIEAPGSSDREELEALTQRCAIEINAMHDLGR
>NC_019729.1|WP_015175203.1|1584014_1584896_-|ACP-S-malonyltransferase
MTKTAWVFPGQGSQAIGMGADLLNLPTAKAKFELAKEILGWSVPEVCQKEEAKLSRTLYTQPCLFVVESILADLVREKSDRPAVVAGHSLGEYVALYAAGVFDFETGLRLVKRRAELMDTASGGQMVALIGFDRQELELQIQYSRDVVLANDNSEAQVVISGTPAAVEDLLAKIKVKRAVKLNVSGAFHSPLMASVAAEFQLALKSARFSDAKMLVLSNAEPSATTSAATLKQRLTQQMTKGVRWREISLQLPQQGIDRVVEIGPGKVLTGLIKRTCPDLALVNVSSFADLPA
>NC_019729.1|WP_015175204.1|1585436_1586438_-|ketoacyl-ACP-synthase-III
MLQQSGFGIAVTGSGSCTPQVSLDNNGLSQIVETNDEWIGARTGIRSRRLADDRTSLCDLATEASLSAIAMAEISPTDIDLIILATSSPDDLFGTASKIQYQLGATKAVAFDLTAACSGFVFGLVTASQFIRTGVYQNVLLIGADILSRWVNWSDRGTCILFGDGAGAVVLQASEVDSFLGFEIRSDGTQNSSLNLAYKAESKKLIEGVSVGIGGFHPITMNGQEIYRFAVKKVPEVIEKAMFRANVTAAEIDWLLLHQANQRILDAVAQRLKIPPEKVISNLANYGNTSAASIPLALDEAVRLGKVKAGDTIAAAGFGAGLTWGAAIFQWGR
>NC_019729.1|WP_190274418.1|1586597_1587647_-|phosphate-acyltransferase-PlsX
MGSTRARIAIDAMGGDHAPAEVVAGALKAQEELGVEILLVGDPQQIEDSLRQQDAIGRVSKGQLEIVPSEGAVEMHEEPLSALKRKPNASINVAMNLVKQQQADAVVSAGHSGAAMAAALLRLGRLPGIDRPAIGAVLPTMVPGSSVLILDVGANVDCRPKFLEQFALMGTIYSQCVLGVAEPKIGLLNIGEEPSKGNDAAVRTHQLLVDNPNIPFVGNAEGRDVLSGNFDVIVCDGFVGNVLLKFAEAVGEVVVQVLKEELAAGLKNQISAPLLQESLKGFKQRVDHVEHGGGLLLGVAGVCIISHGSSQAASIFNAIRLAKEAIDNQVLERIRSSNHQSALEQEAVN
>NC_019729.1|WP_015175206.1|1587998_1589333_+|D-alanyl-D-alanine-carboxypeptidase
MLDLFSSGILSLWLDMAGVRSVGSNAASVLAWRGGIPGLVVAEDLAFGGIDAANPDLPAEATVREYLKELKDKNLIDGNQGIWVQAGMVPLVSQQGKTLMPGASLTKIATSLASLETWGPDYQFETRFRGTGPIRNGVLEGDLVVSGGGDPLFVWEEAIAVGNALNQMGIERVAGNLVVTGNFRMNYESDPLAAGEILRQALEGSNWPPDVVAMYSKMAPGTRKPQVTVAGSVIAEKFVSSGHLLLKRRSLPLAEILKQMNVHSDNEMAQMLADDLGGAKIVQQQATWAAGMPEEELQLVNGSGLGVENQMSPRAACGMMQAIARNLQTTGLTIADLFPVSGRDKGTVEHRHIPRSAVVKTGTLDTVIALAGAIPTRDRGLVWFAIINRGTDWDSLRAQQDIFLQKLVQQWGTASILPLAITPHIDGARPALGAANRSDILVGG
>NC_019729.1|WP_015175207.1|1589414_1589699_+|30S-ribosomal-protein-S16
MIKLRLKRYGKKRETSYRIVAMNSSTRRDGRPLEELGYYNPRNNETRLDVPAIVKRLQEGAQPTDTVRDILRKAHVFEQVGAGANVESSTATAS
>NC_019729.1|WP_015175208.1|1589637_1590159_+|KH-domain-containing-protein
MYLNKSEPEPTLNPAQQQPASPNYAGLVKFLIGPFLETPGSLRVDCELHPRQSRVWVRLAFEDPDKGRVYGRGGRNIQAIRTTLEAVAQTAGQSLYLDIYDREASDRGSGPPRGDRERPDRDRPDRGSREPRGDFRPRTPPPSPSPLASRTPREQPRRTNTPTFRTSRNTPGY
>NC_019729.1|WP_015175209.1|1590533_1591487_+|PhoH-family-protein
MNEKLIIELPSIQSAMSLAGNQEENLKMISKQTGANLVMRGQELLISGTKSQVELCHKLVRSLSDYWKSGKNITGVEIQTARQALDTNRQGDLQDLQRDVLARTRRGEEIRAKTFKQRQYVQAVRTHDLTFCIGPAGTGKTFLAAIFAVQALLSKQYERLILTRPAVEAGEKLGFLPGDLQQKVDPYLRPLYDALQEMIDPEKMADLMERGLIEVAPLAYMRGRTLSNAFVILDEAQNTTPAQMKMVLTRLGFRSRMVVTGDITQTDLPPNQQSGLSVAQNILRNVEGIAFCEFSQADVVRHPLVQRIVAAYELHEK

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Crispr_ID: NC_019729_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_20

1600478-1600645

TypeV,TypeI-A

Consensus_repeat	Method
ACGGCGATTGAAATCGCTTTTACACAAACAAAGCCCGCC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_019729_20

>merge|NC_019729|20|1600478-1600645|CRISPRCasFinder
ACGGCGATTGAAATCGCTTTTACACCAAAGTGACGGCGATTGAAATCGCTTTTACACAAACAAAGCCCGCCTGCGCGGGCTGAAAAAATCAATAGTGACAAGCAGTGAACTGTTTTCTAAATAAAGGTAACGGCGATTGAAATCGCTTTTACACAGACAAAGCCCGCC

>NC_019729|20|19|1600478-1600645|CRISPRCasFinder
ACGGCGATTGAAATCGCTTTTACACCAAAGTGACGGCGA	TTGAAATCGCTTTTACACAAACAAAGCCCGCCTGCGCGGGCTGAAAAAATCAATAGTGACAAGCAGTGAACTGTTTTCTAAATAAAGGTA
ACGGCGATTGAAATCGCTTTTACACAGACAAAGCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175222.1\|1601059_1602190_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NC_019729.1\|WP_015175212.1\|1593366_1594449_+\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221
NC_019729.1\|WP_015175214.1\|1595408_1595891_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350311
NC_019729.1\|WP_015175227.1\|1607183_1607828_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175217.1\|1597476_1598034_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	unknown	unknown	gnl\|CDD\|235777
NC_019729.1\|WP_015175230.1\|1610232_1610853_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274419.1\|1597053_1597407_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_019729.1\|WP_015175223.1\|1602239_1602884_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175211.1\|1592265_1593042_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175226.1\|1605190_1606855_+\|DUF655-domain-containing-protein	unknown	unknown	gnl\|CDD\|197270
NC_019729.1\|WP_015175221.1\|1600712_1601027_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175210.1\|1591606_1592011_+\|heme-utilization-protein-HuvX	unknown	unknown	gnl\|CDD\|319356
NC_019729.1\|WP_015175224.1\|1603265_1604456_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NC_019729.1\|WP_041622404.1\|1598234_1598792_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_019729.1\|WP_015175213.1\|1594624_1595407_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175225.1\|1604594_1604999_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175229.1\|1609257_1610007_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015175215.1\|1596153_1596924_+\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|227688
NC_019729.1\|WP_015175220.1\|1599346_1600471_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238905
NC_019729.1\|WP_015175228.1\|1607962_1609063_-\|calcium/proton-exchanger	unknown	unknown	gnl\|CDD\|273043

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175222.1\|1601059_1602190_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.90014e-112
NC_019729.1\|WP_015175212.1\|1593366_1594449_+\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
NC_019729.1\|WP_015175214.1\|1595408_1595891_+\|hypothetical-protein	gnl\|CDD\|350311	cd18744, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	0.00182403
NC_019729.1\|WP_015175217.1\|1597476_1598034_-\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	2.41543e-48
NC_019729.1\|WP_190274419.1\|1597053_1597407_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.60615e-17
NC_019729.1\|WP_015175220.1\|1599346_1600471_+\|peptidylprolyl-isomerase	gnl\|CDD\|238905	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.	1.30886e-92
NC_019729.1\|WP_041622404.1\|1598234_1598792_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	2.08401e-106
NC_019729.1\|WP_015175210.1\|1591606_1592011_+\|heme-utilization-protein-HuvX	gnl\|CDD\|319356	cd16827, ChuX-like, heme utilization protein ChuX and similar proteins. This family contains ChuX, a member of the conserved heme utilization operon from pathogenic E. coli, and similar proteins, which include ChuS, HutX, HuvX, HugX, and ShuX in proteobacteria, among others. It forms a dimer which displays a very similar fold and organization to the monomeric structure of other heme utilization proteins such as HemS, ChuS, HmuS, PhuS; these latter occurring as duplicated domains. They all bind heme via a key conserved histidine. The genes encoded within these heme utilization operons enable the effective uptake and utilization of heme as an iron source in pathogenic microorganisms to enable multiplication and survival within hosts they invade.	1.58261e-07
NC_019729.1\|WP_015175224.1\|1603265_1604456_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	3.05222e-180
NC_019729.1\|WP_015175228.1\|1607962_1609063_-\|calcium/proton-exchanger	gnl\|CDD\|273043	TIGR00378, cax, calcium/proton exchanger (cax). [Transport and binding proteins, Cations and iron carrying compounds].	5.77567e-120
NC_019729.1\|WP_015175229.1\|1609257_1610007_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.79949e-27
NC_019729.1\|WP_015175215.1\|1596153_1596924_+\|GerMN-domain-containing-protein	gnl\|CDD\|227688	COG5401, COG5401, Spore germination protein [General function prediction only].	3.2133e-29
NC_019729.1\|WP_015175226.1\|1605190_1606855_+\|DUF655-domain-containing-protein	gnl\|CDD\|197270	cd09173, PLDc_Nuc_like_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium. Putative catalytic domain, repeat 2, of uncharacterized hypothetical proteins, which show high sequence homology to the endonuclease from Salmonella typhimurium and vertebrate phospholipase D6. Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which characterizes the PLD superfamily and is essential for catalysis. Nuc and PLD6 utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. However, proteins in this subfamily have two HKD motifs in a single polypeptide chain.	4.78283e-43

>NC_019729.1|WP_015175220.1|1599346_1600471_+|peptidylprolyl-isomerase
MLHWPNFSIDTCKRWVKTVALALLLFTLSLSFSAVSHAKRPSSSMPAGNAITDGRALLRFALPIDNQTVRELQISLEDIGNHIRSKRWGPISSDVSKASRILNLRESDLLESIPDAKKPEAEALVAGVKEKIAQLEKAVEAKDRDKVIDLKATILGSVGEIEELMVKKFPFEVPAKYANLPQLKGRATVAVQTEKGEITVVVDGYSAPVTAGNFVDLVDRGFYDGLPFIRSEESYVLQTGDPEGKEVGFIDPATGKYRNIPLEVLVRDEKEPIYGITLEDAGRYRDEPVLPFSAFGTVAMARTETDPDSASSQFFFFLFEPELTPAGLNLLDGRYAVFGYMIEGKEVLEQLKQGDKIVSAKVVKGIENLVRPQV
>NC_019729.1|WP_041622404.1|1598234_1598792_-|elongation-factor-P
MISSNDFRPGVSIEWNNGVWRVIEFLHVKPGKGSAFVRTKLKNVQTGNVVEQTFRAGETMPQANLEKSVMQHTYKEGDDFVFMDMETYEESRLNAKQIGDRVKYLSEGMEVSILRWNDQIMEVELPNSVVLEVLQTDPGVKGDTATGGSKPAIVSTGAQVMVPLFISIGERIRIDTREDKYLGRE
>NC_019729.1|WP_015175217.1|1597476_1598034_-|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein
MQLDLNQLCDLLTVLDKTGISELTLKSGDIELTVRKGILASSPATSAALPVTVATVAPSLLGAVPSPTLASPPAVDQNLAADLAAPVPVAPVAVPAAVPASVDTKWVPIISPMVGTFYRAAAPDEPPFVNVGDRIKVGQTVCIIEAMKLMNEIDADEVSGQVMEILVQNGEPVEYGQVLMRINPD
>NC_019729.1|WP_190274419.1|1597053_1597407_-|winged-helix-turn-helix-transcriptional-regulator
MKSSQPVPQEVVQQVAEYFSILSEPMRLRILNLLRDGEKCVQELVEATQTSQANVSKHLKLMLQAGILTRRSEGTSAYYKVQDELIFELCNMVCDRLATRIEQQALHFRAFSLTTKH
>NC_019729.1|WP_015175215.1|1596153_1596924_+|GerMN-domain-containing-protein
MKDGQEVRRVSTAVIAGVCGLALLAGGGIAWWTANRSPTPANTQSSAQTTAPPLSPSPAESPAVVIPVPPPNPVQVPQVQTPQVQTPQVQTPQVQTPQALVPKSPQPKPLPQTDVQTVQVYWVKDASGKFEGVPTKVAVKQADKPDAALQAAFNSLLAGPKDATVSSEIPKGTKLRSLSVKNDGVYVDLSAEFTSGGGSNSMTGRLGQVIYTATSLQPNTKVWISVEGKPLELLGGEGLEVAQPSTRESFDKNFPL
>NC_019729.1|WP_015175214.1|1595408_1595891_+|hypothetical-protein
MIVILDSNILALLVTPLDEKFSEDEKLGTEIHQCTKWFERLLSKGARIIVSDICDYEVRREFIRIKSKSVQELDNLRDLIEFKPVTFAVLEKAAELWAEARYLSQSNKIKENIDVDCIMAAQWCLLKEQYPGRKIIIATKNIKDFQRVTDCDVWQNITYL
>NC_019729.1|WP_015175213.1|1594624_1595407_+|hypothetical-protein
MTVTTENSIRALLSNTEEVMLGELSLIKHSLEKLFESDEARIPKEESFKYLLKIVEVSERIRAAKYPRQKSDIYYSEYRPFFSELKAKYSEFLARDTFKEIEAHEKYMDGFRELIIALGIMLFAFEEIDRVRQYGALYTGMVGLSELLEEYLLYFPQDLIEYLKNITLAFLNDSSLKPDKANQKESVFSYLVGLKNTARAVLWQIEENRTRSEKQPSIDSHSNQIFTRELQIQKNQAAIDWANSRLEQIETISEAKGWKL
>NC_019729.1|WP_015175212.1|1593366_1594449_+|photosystem-II-q(b)-protein
MTTTLQQRSSANVWERFCEWVTSTDNRIYVGWFGVLMIPTLLSATICYVIAFIAAPPVDIDGIREPVAGSLMYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFLLGAWPVVGIWFTALGISTMAFNLNGFNFNQSIIDSQGRVINTWADVINRANLGMEVMHERNAHNFPLDLAAAETTPVAMVAPSING
>NC_019729.1|WP_015175211.1|1592265_1593042_+|hypothetical-protein
MKVIWSFCLALLVLLWGGGARAGVLGDRISSFPNWESKPPIAVAKGDLVYPDWMAGNWNVASTLVDLAAPLAPNIVTPGFESNRQYLQQPVLFKVRFQPEKNIGLISNYTFKKAQNIVADRTFNGLSIAQAYLGDGGVLSVKVDPTNPNRQITVLKGERQLISIVTSRGTETPNPCEFVSTEISQQVFRGESDIYLNEVETTTAYRVVGGGKNGDSASKRIEADQVTAIYLSPQDPDYFAAGGHPVALYRYRLELVPA
>NC_019729.1|WP_015175210.1|1591606_1592011_+|heme-utilization-protein-HuvX
MPNLKEFLEACEQLGTLRLIVTSSAAVLEVRGSIHKLFYAELPKGKYANMHAEIFEFHLNMDKIKQVKFETGEAKRGNFTTYAIRFIDEQNEAALSAFLQWGKPGEYEPGQVESWHELKEKYGEVWEPAPVEAL
>NC_019729.1|WP_015175221.1|1600712_1601027_+|hypothetical-protein
MAILELFLVIGLGGFAGLLIVKNVQESQQKQRLDEAFYQLLETQNSQISLIQLAANARVQAEVAQQYLTRQVKIFSAVLEVDDEGDTFYRFPRLRLPPSSGKEW
>NC_019729.1|WP_015175222.1|1601059_1602190_+|thiamine-phosphate-kinase
MQVKDIGEQGLLRILQKFCPAEIVGDDCAVMAANLNQSLAITTDMLVDGVHFSDRTTGPYYAGWRAAAANLSDLAAMGARPLAVTVALAVAADTAVEWVEEFYRGMTACLQEYDTPIVGGDVVRSPVVTVAITAFGQVECDRTISRSNARSGWAIVATGVHGASRAGLELLLNPEFGQNLTEVDRASLILAHQCPKPRLDVLPVVWEILGCEGAMEPPLSPPLSKGGKQDFNSPPLSKGGPGGVNSPIAKGGPGGVQSSIAIAGMDSSDGLADAIIQICRASGVGAKVDRTKIPIPDIFSEIVSPEKALDWALYGGEDFELVLFLPIANAKLLVEKIGDGAAIVGTATESTDIWLTDSSGIDRDTVLKLDRGFQHF
>NC_019729.1|WP_015175223.1|1602239_1602884_-|hypothetical-protein
MEEKRAQAYLQLIHTLLNAPNGDEPQILQDNSELLDRGFLETCELVASTLAEQGGENGAKFLRHLARYLAEIIEVNDDVDSNNSASENFQEYANFFLELLQAEQDSNGDVAVIYPMLEGRQHLLNATFAETLQQVAHKLIAGENSETISSIIGLIENLSIHISDFPSGNKANNIEIAITGYQIVLNNREPGSEKWTQTQNNLATAYNNSKIPGG
>NC_019729.1|WP_015175224.1|1603265_1604456_-|cysteine-desulfurase
MQIYLDYSATTPARPEAIQAMQKALTQQWGNPSSLHEWGQRAATALELARMQVASLINALPESMIFTSGGTEADNLAIMGIARLYTKPQHIIISSVEHSAVAEPARQLEQLGWEVTRLPVDKFGRIHPLDLQESLRSNTVLISIIYGQSEVGTLQPIEALGQIARDRNIMFHTDAVQVAGKLQVDVQKLPVDLLSVSSHKLYGPQGAGALYVRPGVELVPMLGGGGQELKLRSGTQALPAIVGFGVAAELALQEIDVETPRLIALRDRLFDRLSHVPSLVPTGDRYCRLPHHVSFCIISPSSRPYQQRDTGRITGKTLVRQLNLAGIGISSGSACSSGKLTPSPILLAMGYDEIGAVGGIRLTLGRETTEADIDWTVIAIEQILDRLMPKVALSRR
>NC_019729.1|WP_015175225.1|1604594_1604999_-|hypothetical-protein
MAKRKRIFPCGHKGYGKACHRCTQELLAQQHFVEVLTQKQTKKQEREASFARDIIDLRGLPDHVVTKARAIIAALGENKNYRDFGGKRLRHNRLIISIPVTRNYRMLCEDCGTFLIPQKVLSHEDYNVCKPGSH
>NC_019729.1|WP_015175226.1|1605190_1606855_+|DUF655-domain-containing-protein
MAVLYYHLLGFCCAGLVAINLAGCGQTKQDVQNLPLSLAPLPQDPLLQVYFNQSIASSYTEPYRQQTRPGDDLENSIAVAVASAGSTVDVAVQEFRLPGIARVLAERGRSGIKVRLIVEHMYSRPWSDFTAQELAKLPERERDRYNEFVQLADRNKDGKLTADEIKQNDALVIVKDAGIPVIDDTADGSKGSGLMHHKFVVIDGKTVIVTSANFTTSDIHGDFKTAASRGNANNLLKIENPQLAQLFTQEFNIMWGDGPGGKPDSKFGIKKPFRQVQKVKIGNATVAVQFSPTSQTLPWEKSPNGLINRTLGSAKKSVDLALFVFSAQRLSNTLEIEASRGVAVRALIDSNFIYRSYSEGLDMMGATLMQDCKLETDNRPWRKPLTAVGVPLLPMGDRLHHKFGVVDGKTVLTGSHNWSEAANRGNDETLLAIESPTVVAHFEREFDRLYKGATLGIPARIKQRIDAKKKECDSLQAASKSPSAKPQIAPGKKLVNLNAASQEELETLPGVGPKLAERIIAARQQQPFTSLEDVARVQGVGDKILDKWRDRVTW
>NC_019729.1|WP_015175227.1|1607183_1607828_+|hypothetical-protein
MKHARFITGRPQIKFLGILVGAFFLTLAAFTVSAQQTSEAQFRVKNENAFNINLIQFKRTEYVGSCAGTVFSPDSQSARFVSSKTPPAPNRRVVIKNVTDGMDTNPYPYTDRSYNKGEFSEDFAFKLGNSHKTRTFSVLEGENKFVYEIKENDQVIEQGTLTAEVSIQSLGTFPRQQICEDKVECRDTSDCRDSKGRKRSCRRECFPVQQCRCP
>NC_019729.1|WP_015175228.1|1607962_1609063_-|calcium/proton-exchanger
MSIKKILSIALLIFIPISIAAEYLHWGSLAVFITSALGIIPLAIWLSTATEEVAIVTGPSIGGLLNAVFGNATELIIAIVALKAGLIDIVKASITGTIISNLLLVMGFSMLLGGIRYKEQEFKPIIARVNGSTMTLAVIAILLPTMVIYTSNGVEPAAIQNLSLITAIVLIAVYALTLLFSLKTHSYLYEVGLLELESENPQNTKDESTTHKPNLWLWLGVLVASTVAVAFESEIFVGVVEETTKGLGLTPLFTGVILLPIVGGAAEYVTAVGVAMKNNMDLSVSVAMGSSLLVALLVAPVLVIIGLVIHQPMDLNFNPFEVVAVAIAVTIANLISLDGRSNWLEGVLLLATYTVLGAAFYFHPIT
>NC_019729.1|WP_015175229.1|1609257_1610007_+|Uma2-family-endonuclease
MSQSVVPVVESKQIDTSPTLTFEEYRSYQTDSDLQYELYKGKLIPMPTATVLHIKICEYLVYKLQRYLAEHNLDLVAKTGLGVRTEEDTSRIPDVVVCTQSLLEQAAARPGSGILDFEEKPLLVIEVVSQNRRADYVIKRAEYELANVPEYVIVDPTPNKELVRVLAFPEGEDIYTQTDFVPGQKMVSVVFPNLTLSVSEILSPPLVEGLIKAEQARFQELEQQADEQRQRAERLAVRLRELGVDPDRI
>NC_019729.1|WP_015175230.1|1610232_1610853_-|hypothetical-protein
MTTTASASGRTGQFPFDFAPQRTQDADLLRQLNFVPGLKEVLTLRQVHALEHATVWVLSQSLGATTARADNELLGGMSTDQGFYLYGHVNIAQLRQAVREALQRIASGEWDLAVHPRCGTNLSVAMLLTAGLAVGIHLALPRGPILQLLGLGAAAAAAAQLAPDVGSLAQRYVTTAIPFNLSVVDITVSHDFWGREAHFVRVRWVE

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Crispr_ID: NC_019729_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_21

2103445-2103566

Orphan

Consensus_repeat	Method
TTCTTAACTCCCCCCCTTTACAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019729_21

>merge|NC_019729|21|2103445-2103566|CRISPRCasFinder
TTCTCAACTCCTTCAGTTTCCCAGGAAAAAATTCAATTCTTATTCTTAACTCCCCCCCTTTACAAGGGGGGGTTGGGGGGGGTAGCTCCGATCTTGTTCTTCTTAACTCTCCCCCTTTACAA

>NC_019729|21|20|2103445-2103566|CRISPRCasFinder
TTCTCAACTCCTTCAGTTTCCCA	GGAAAAAATTCAATTCTTA
TTCTTAACTCCCCCCCTTTACAA	GGGGGGGTTGGGGGGGGTAGCTCCGATCTTGTTC
TTCTTAACTCTCCCCCTTTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175608.1\|2096265_2097651_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175609.1\|2099009_2100539_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|129465
NC_019729.1\|WP_015175603.1\|2089483_2090452_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NC_019729.1\|WP_015175617.1\|2109103_2109478_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NC_019729.1\|WP_015175604.1\|2090589_2090970_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175619.1\|2110896_2111328_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175621.1\|2112523_2113888_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|284995
NC_019729.1\|WP_015175605.1\|2091190_2092675_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015175613.1\|2105090_2105996_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226304
NC_019729.1\|WP_190274355.1\|2100597_2100756_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175616.1\|2108612_2108753_-\|photosystem-II-reaction-center-protein-Ycf12	unknown	unknown	gnl\|CDD\|237469
NC_019729.1\|WP_006631083.1\|2110260_2110548_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NC_019729.1\|WP_041623012.1\|2111435_2112407_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NC_019729.1\|WP_015175611.1\|2101710_2102793_+\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221
NC_019729.1\|WP_015175607.1\|2095206_2096049_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_019729.1\|WP_015175622.1\|2114481_2115162_-\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NC_019729.1\|WP_015175618.1\|2109672_2109996_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175615.1\|2106370_2108491_+\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|273193
NC_019729.1\|WP_015175610.1\|2100812_2101160_+\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_019729.1\|WP_015175606.1\|2094105_2094504_+\|DUF4342-domain-containing-protein	unknown	unknown	gnl\|CDD\|379521

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175617.1\|2109103_2109478_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.01039e-10
NC_019729.1\|WP_015175609.1\|2099009_2100539_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|129465	TIGR00368, Uncharacterized_protein_YifB, Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain. [Unknown function, General].	0
NC_019729.1\|WP_015175603.1\|2089483_2090452_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.74384e-115
NC_019729.1\|WP_015175621.1\|2112523_2113888_-\|AAA-family-ATPase	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	0.000395156
NC_019729.1\|WP_015175605.1\|2091190_2092675_-\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.88449e-40
NC_019729.1\|WP_015175613.1\|2105090_2105996_-\|hypothetical-protein	gnl\|CDD\|226304	COG3781, COG3781, Predicted membrane protein [Function unknown].	1.72829e-130
NC_019729.1\|WP_006631083.1\|2110260_2110548_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	9.63831e-17
NC_019729.1\|WP_041623012.1\|2111435_2112407_-\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	9.35236e-123
NC_019729.1\|WP_015175611.1\|2101710_2102793_+\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
NC_019729.1\|WP_015175607.1\|2095206_2096049_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	4.2618e-08
NC_019729.1\|WP_015175622.1\|2114481_2115162_-\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	1.62055e-104
NC_019729.1\|WP_015175610.1\|2100812_2101160_+\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	2.00428e-57
NC_019729.1\|WP_015175615.1\|2106370_2108491_+\|DHH-family-phosphoesterase	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.56933e-162
NC_019729.1\|WP_015175606.1\|2094105_2094504_+\|DUF4342-domain-containing-protein	gnl\|CDD\|379521	pfam14242, DUF4342, Domain of unknown function (DUF4342). This family of proteins is found in bacteria. Proteins in this family are typically between 97 and 206 amino acids in length. There is a single completely conserved residue P that may be functionally important.	1.21207e-27
NC_019729.1\|WP_015175616.1\|2108612_2108753_-\|photosystem-II-reaction-center-protein-Ycf12	gnl\|CDD\|237469	PRK13686, PRK13686, photosystem II reaction center protein Ycf12.	4.46918e-05

>NC_019729.1|WP_015175611.1|2101710_2102793_+|photosystem-II-q(b)-protein
MTTTVQRRESGNVWERFCEWVTSTENRIYVGWFGVLMIPTLLSATICYVIAFIAAPPVDIDGIREPVAGSLMYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGIFCYMGREWELSYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGALFSAMHGSLVTSSLVRETTETESLNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFLLGAWPVVGIWFTALGISTMAFNLNGFNFNQSIIDSQGRVINTWADVINRANLGMEVMHERNAHNFPLDLAAGEVTPVAMVAPSING
>NC_019729.1|WP_015175610.1|2100812_2101160_+|histidine-triad-nucleotide-binding-protein
MTTQETLFSKIIRKEIPADIVYEDDLALAFRDIHPQAPVHILVIPKQPIAKLADAESGDRALMGHLLLTVKRVAEQLGLSNGYRVVINSGSDGGQTVDHLHLHVLGGREMNWPPG
>NC_019729.1|WP_190274355.1|2100597_2100756_-|hypothetical-protein
MDFDGRGKKEVGRRRKWEEGRGSGKREDPAGEREEEKKKRQGKVFLASPDIH
>NC_019729.1|WP_015175609.1|2099009_2100539_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MLARVWSASIVGIDAVKVGVEADVSGGLPKIVVVGLPDSAVQEAKERVKATLKNSGYAFPMRSIVINLTPADLRKEGPSFDLPIAIGILAASEQVSGQLLGDYLFLGELSLDGSLRPVAGVLPIAAAAQKMGISGLVVPAGNAQEAALVHGISVYGFENIFAVTDFLNNPEVYSPVEVNGREELAKTRFLGLDLKDVKGQIHARRALEIAAAGGHNLIFVGPPGSGKTMLARRLPGILPPLTFDEALDVTQIHSVAGLLKDKGSLVGDRPFRSPHHSASGPSLVGGGSFPRPGEISLAHRGILFLDELTEFKRDVLEFLRQPLEDGYVTISRTRQSVMFPAQFTLVASTNPCACGYYGDSIQQCTCSPQKREQYWAKLSGPLMDRIDLQVAVNRLKPEEITRQPTGEESEPVRVRVQRARELATRRFQSESSLRCNAQMQSSHINKWCQLDDASRNLLEMAIRKLGLSARASDRILKVARTIADLSGDESLKTNHVGEAVQYRTIDRMQ
>NC_019729.1|WP_015175608.1|2096265_2097651_-|hypothetical-protein
MELFAEQKRCLDCLVSSIEQLGGRVDIPKLEQIAELIIQAMRGPWRSFHTSEHIFEVGGSVDPIEVLAALFHDLVYVQVDQGVSFNISSALCPFVKEVRSQLVIRDETELPDDAMYQLVASVFGFIPGKTLSPFGGQNEFLSAVIAAKSLEPFLPPSTIAEITACIEATIPFRPVAPSGLSAIELLHQRLITINRDFHLGWSHAEIVEIVKRSVRLANRDVENFASPNSSNFLDNTWNLMPETNHELTNVNSYTVAGYRKSLQKMEGFLNCLKPELVFQQFMQEPDDETYANLIARTRKNIEVAKLYLGVKLITIAILEALSYRLGRDIPLSTMMGELRAPGFKTSVLEDYLPNKQIAYPLESQLQREVLDLLEIGRNQESRYDIKNSPVSTFIIKSIGFAETENFLKKAQDFFAGHISSEEFLSYCSPDVIETISSGVMKLFDSRKTALGKVKLVHQTVS
>NC_019729.1|WP_015175607.1|2095206_2096049_+|hypothetical-protein
MKPNEQNSSSREIHQEVHTDATNGHVSTTRTTTNVPSTTANASKEAAHHQGYVQGQMAENHRQLGVQEARDNENAGRGLLLGILLTSLVGLVLGTVYYFNRAQEAPTPTSDTVIVVPKANQPSATPAPTRTVEKEKTIIQKIVPVPVQPSPVQKATPAPQPSPAQQATPAPQANPAPNINITVPNSQQQDAPAQQAAPSPSSPSNNTNTTVPNPQDEPASTPPTPAPESSASPSPTQDDGASGAGTSGSTNRESQSDSNPTDTVVPNSNSGAEGATASPQ
>NC_019729.1|WP_015175606.1|2094105_2094504_+|DUF4342-domain-containing-protein
MDTPTDREQEPVGTRELESIPVSEKVSAQKVTEVNFETTPLETPAYTQQKVSVEEVKINGDDLVAKVKELIHEGNIRRIIIKNEEGRILVEVPLTVGVVGGVIGAALFPVIAAVGAIGALVAHMTIIIERTE
>NC_019729.1|WP_015175605.1|2091190_2092675_-|histidine-kinase
MYETDGLSPLKSPLGLRSTLQELTLYDFLLESECPGAEVAKIFQANPLVPGIIITQQGKFIGMISRRRYFEHMSRPYSLELFSQQPLFILYRFTKTDMLVLDRETSIMTAVRQSLERSPELIHEPIVVQVEPETYKLLDVHQLLLSQLQIHELSTVAMRESQAQLRHQAQQLELALLELQRTQTQLIQTEKMSSLGQLVAGVAHEINNPIGFIYSNLHHAKEYTQSLMRMLDIYRQHCPEPIAAVEAEAEKIEFDYLLEDLPKVLNSMQQGAERVRDIVLSLRNFCRLDEAEMKQVNIHDGINNTIMLLQSQLKGKPGQEAIEIYKEYSDLPLVQCYPGQLNQVFMNILLNAIYALVESNKHEKVDKKSPNKSQSCEQKQSCIKTQLSLSNSTRLIPAIWIRTELIEKKKVIIKISDNGPGMTEDVRKRLFDPFFTTKPVGQGTGLGLSISYEIVVNQHGGALKCFSEPGKGAEFAIEIPLQQSSLAQILPRFA
>NC_019729.1|WP_015175604.1|2090589_2090970_+|hypothetical-protein
MTTDETFQIEVQRLHKLTVYGRWLTVILLWITVGSLSIWGLRREIALWLEHFTWAAVRYGLSFHRWPTLGLGLCLGMTLAVLTWQSRNMVRGLPLREKQGLEQQVRRIRQQGPSHPLWKWVCKGLR
>NC_019729.1|WP_015175603.1|2089483_2090452_+|protein-translocase-subunit-SecF
MQFSVIKQRSIWWSISAAIILAGIVSMAISWTRPDIRAPLRPSLDFIGGTRLQFELDCTKPENCKPIDIAAVRQVLDAQGLAGSSIQVIGKEQRGLSLRTKTLDVEQRTKLQTALKDKIGAFAPKSTQIDTVGPTLGKQLFTSGLLAVLLSFVGITIYLTFRFQLDYAFFAFVALFHDVFITVGIFSILGLVLGVEVDSLFVVAILTIIGFSVNDTVVIYDRVREVIKLNPGQSIDQIVDDAVMQTLGRSINTTMTTLLTLFSIFLFGGETLKYFALALIVGFIAGAYSSIFIASTLLAWWRSRTGHSIPVPAEGINQSEEV
>NC_019729.1|WP_015175613.1|2105090_2105996_-|hypothetical-protein
MSGDRPPWFKIALQVRGSVIPSILPRVLLCGGFGVFISLLHFLKLPVSLPILSSIVPSIVLGLLLVFRTNTAYERFWDGRKFWGTLVNNVRNLARQIWVAIEEKDPQDIELKKSALRLLPAFAVAMKLHLRQESVNPELEPLMSPAQYQKLKSMNNPPLEIAFWIEDYMHEQYERNCLDVYQLTGMNELLNSMIDVLGGCERILKTPIPLAYAIHLKQLLLLYCLALPFQMVKDLGWGTGPVVALISFTLFGIEEIGIEIENPFGLDANDLPLDNICAAMQRNIDDLISLSPSVHEHVKDK
>NC_019729.1|WP_015175615.1|2106370_2108491_+|DHH-family-phosphoesterase
MQEQPTSVPPHFHRLPNQRWQIYSPQRQQAEEFAAEIGLSPLLAQVLINRGIDSVKEVQGFIEPESLVLPAPTDEFPDLAASVKLLREAISGGQKIAICGDYDADGMTSTALLLRALRVLGANVDYAIPSRMREGYGINDRIVEEFHSEGVALILTVDNGIAAYGPVARARELGVKVIITDHHDLPPKLPPADAILNPKLIAESSPYRGLAGVGVAYVLAITLAQDMKKVGGLVNPLLELFTLGTIADLAPLTGVNRRWVKRGLRLLPHSTLAGIQALIHVAGVQPGSAENPSILNSKIKGGHGGTAPTTQNSLKPEDIGFRLGPRINAVGRLADPQIVIELLTADDRELALKNAMQCEQINQRRQELCQEIEQEAIAWCEERAIDLQQERVLVVVQPGWHHGVIGIVASRLVERYGVPVFIGTFEDEAVGAVPPCPPAKIVRGSARGIPEFNVFDGLNFCADLLTKFGGHKAAGGFSMPAQNLEQFRNQLSIFANQCLQPEHLKPLVSVDVRADLAEINLDLYRQIDALEPCGIENKAPVFWTPNVCITEQKIVGKGGHVKLTATQEGNVSASVKAIAWRWGEYFPLPRRVDIAYRLRENSFNGKTSVELELLGVRLPANAATSKPPRFGKVEFDYCDRTYSCSLSPAGSIEELRIRNSQGQVLAVAPGQNIGLLGNSRKDAREVDVSLPFFENLIQTAKHALGI
>NC_019729.1|WP_015175616.1|2108612_2108753_-|photosystem-II-reaction-center-protein-Ycf12
MDFITDLFSGLGGVDYQLIVQVALLAAVVLSGPIVIFLLAAKGGDL
>NC_019729.1|WP_015175617.1|2109103_2109478_+|YkgJ-family-cysteine-cluster-protein
MATWRCVKQCGACCYLDPTERPNLDEYLSEEELALYLSLVGDDGWCINFDKETRECGIYADRPRFCRVDSEVFQDMYGVEPAQLNDFAIECCLEHIEDLYGDRSLEMIRFNSEVGILALPDGVA
>NC_019729.1|WP_015175618.1|2109672_2109996_+|hypothetical-protein
MSNREGFTGGFIAGAAVGGLVGAVLGAVLSRRAAEALLSEPSDTKTRKIRQRKASQLEAEGMEVARLSLEDKIAQLNQAIDDVRLQLGDVNGNAPAPGSEGSIAPDS
>NC_019729.1|WP_006631083.1|2110260_2110548_+|YggT-family-protein
MSSSIGLLATTLATFLQIYLVLMIFRVLLSWFPNINWYDPPFSILSQLTDPYLNLFRSIIPPLGGIDFSPLIAFFVLQFGSEFLIGLLTSLQTSL
>NC_019729.1|WP_015175619.1|2110896_2111328_-|hypothetical-protein
MKFRAISLFFATCLIGIFSLVFTPPAWALTQIKLSDLSYRECPAEMGEGTVTSGSSMEANCFLITGKAENSTGKPVVNADIFGRIYDADDNPVMQNRTRLGSIEEVPPGVSDFQLRISVAANQRTPLKLKQFKATGFTGVVRR
>NC_019729.1|WP_041623012.1|2111435_2112407_-|shikimate-dehydrogenase
MIKGTTKLLGVIGHPVEHSLSPAMHNAAISHLGVDFVYLPFPVKPGDLKAALAGFAAIGVRGFSITIPHKQAILPLLSEVSPIARSIGAVNTVYMTDRGWCGTNTDVEGFLAPLQTPPTPPYQGGAKDAISALERGNTAVESCPPPSGARGGSDWSQKVAVILGNGGAARAVVAGCAQLGCAEIHVVGRNEQNLGEFQQSWVNSPMPVQNLQVHTWDNLSRLISQADLLVNTTPVGMYPQGEKSPVAAGEIDRIPAGAIVYDLIYTPNPTQFLKDAQLRGARAIDGLEMLVQQGAAALKIWLNKESVPVDVMRQALRQHLGLD
>NC_019729.1|WP_015175621.1|2112523_2113888_-|AAA-family-ATPase
MELNLQKFYSACNPSYTLAVANQEDRQYYIDFSSVRGGTIVEQLERTISRLSPDAPTCQLFTGHIGSGKSTELLRLQAQLQQQGFHVVYFESSKDLDMADVDITDILLSVARQVSESIEKRKIKLQPTGFKALLKGVADVFQTQIDLRAEATVPGFGEINASTEGEFSLALGIGKITAKAKDAPNLRSELRQYLEPRTNVILDALNKELLEPANQELKRQGKQGLVVIIDNLDRIHLCAKPTGRLQPEYLFVDRGEQLARLNCHVVYTIPLVLIFSNDLGQLTNRFGVDPKVLPMVPVQLSDGSECSEGVELLLQMVLARAFPTVQPSQRYALVGKVFDSAETLDRLCRVSGGHVRNLLQLLYSCLQKQDPPLSRETLENVIVQRRHQLTLAIEPDEWELLRQVSATKTVSGETKYQILLRSLWVFEYRYGEDYWFDVNPILADAKEFRETVES
>NC_019729.1|WP_015175622.1|2114481_2115162_-|type-1-glutamine-amidotransferase-domain-containing-protein
MTSQKVLIVLTSHDTLGDTGKETGFYLPEVTHPLDAFTKAGLTVDFVSPKGGKAPMVGVDLEDGLNKAFLEDLQQVARVENTLNPAQIDPAEYGAIFYAGGHGTMWDFPDNQELTGIAAAIYEAGGIVGAVCHGPAALVNLKLSDGEYLVANKTVAAFTNEEEAAVGLTDIVPFLLESKLIERGANFTKVPNFQAHVVASERLVTGQNPASAAGVGHKMVELLQNK

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Crispr_ID: NC_019729_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_22

2165469-2165598

TypeV

Consensus_repeat	Method
CCTGCCTCATAGCAAAAGTCGGTTGAAACCGACTCAAGAGTTTGAAG	CRISPRCasFinder

1 spacers

Cas14c_CAS-V-F,cas14j

The CRISPR arrays of NC_019729_22

>merge|NC_019729|22|2165469-2165598|CRISPRCasFinder
CCTGCCTCATAGCAAAAGTCGGTTGAAACCGACTCAAGAGTTTGAAGGATAAAATTATCGACAGTCCGGCAGGGGTTGAAACTCCTGCCTCATAGCAAAAGTCGGTTGAAACCGACTCAAGAGTTTGAAG

>NC_019729|22|21|2165469-2165598|CRISPRCasFinder
CCTGCCTCATAGCAAAAGTCGGTTGAAACCGACTCAAGAGTTTGAAG	GATAAAATTATCGACAGTCCGGCAGGGGTTGAAACT
CCTGCCTCATAGCAAAAGTCGGTTGAAACCGACTCAAGAGTTTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175667.1\|2157028_2158135_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NC_019729.1\|WP_015175682.1\|2175981_2176986_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_019729.1\|WP_015175666.1\|2155795_2156647_-\|cyanoexosortase-A	unknown	unknown	gnl\|CDD\|163475
NC_019729.1\|WP_015175677.1\|2169627_2170080_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175664.1\|2154271_2154949_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175680.1\|2174020_2174959_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_019729.1\|WP_015175269.1\|2173466_2173880_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_019729.1\|WP_015175676.1\|2168063_2169290_-\|alpha-1,2-fucosyltransferase	unknown	unknown	gnl\|CDD\|211387
NC_019729.1\|WP_015175668.1\|2158492_2159038_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175671.1\|2161268_2162327_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NC_019729.1\|WP_015175672.1\|2162422_2164003_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225926
NC_019729.1\|WP_015175683.1\|2177111_2178284_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_019729.1\|WP_015175678.1\|2170545_2171757_-\|transposase	Cas14c_CAS-V-F	-	gnl\|CDD\|223747
NC_019729.1\|WP_015175675.1\|2166636_2167776_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132846
NC_019729.1\|WP_015175665.1\|2155127_2155796_-\|cyanoexosortase-A-system-associated-protein	unknown	unknown	gnl\|CDD\|275015
NC_019729.1\|WP_015175669.1\|2159504_2160110_+\|DUF1517-domain-containing-protein	unknown	unknown	gnl\|CDD\|369378
NC_019729.1\|WP_041623018.1\|2160210_2161089_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175674.1\|2165740_2166589_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_019729.1\|WP_015175673.1\|2164240_2165443_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|234600
NC_019729.1\|WP_015175679.1\|2172017_2173421_-\|transposase	cas14j	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175667.1\|2157028_2158135_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_019729.1\|WP_015175682.1\|2175981_2176986_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.70523e-77
NC_019729.1\|WP_015175666.1\|2155795_2156647_-\|cyanoexosortase-A	gnl\|CDD\|163475	TIGR03763, conserved_hypothetical_protein, cyanoexosortase A. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci and/or different taxonomic lineages. We designate this relatively divergent cyanobacterial type to be type 3. We propose the gene symbol xrtC. This type coexists with a TIGR02602-recognized form in Nostoc sp. PCC 7120. [Protein fate, Protein and peptide secretion and trafficking].	3.87951e-83
NC_019729.1\|WP_015175680.1\|2174020_2174959_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.34775e-15
NC_019729.1\|WP_015175269.1\|2173466_2173880_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	8.7039e-50
NC_019729.1\|WP_015175676.1\|2168063_2169290_-\|alpha-1,2-fucosyltransferase	gnl\|CDD\|211387	cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase. Alpha-1,2-fucosyltransferases (Fut1, Fut2) catalyze the transfer of alpha-L-fucose to the terminal beta-D-galactose residue of glycoconjugates via an alpha-1,2-linkage, generating carbohydrate structures that exhibit H-antigenicity for blood-group carbohydrates. These structures also act as ligands for morphogenesis, the adhesion of microbes, and metastasizing cancer cells. Fut1 is responsible for producing the H antigen on red blood cells. Fut2 is expressed in epithelia of secretory tissues, and individuals termed "secretors" have at least one functional copy of the gene; they secrete H antigen which is further processed into A and/or B antigens depending on the ABO genotype. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.	6.711e-33
NC_019729.1\|WP_015175671.1\|2161268_2162327_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	1.22562e-07
NC_019729.1\|WP_015175672.1\|2162422_2164003_-\|peptidoglycan-binding-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	3.7958e-32
NC_019729.1\|WP_015175683.1\|2177111_2178284_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_019729.1\|WP_015175678.1\|2170545_2171757_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.31931e-55
NC_019729.1\|WP_015175675.1\|2166636_2167776_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132846	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomonas. Even though VipD shows high sequence similarity with several functional regions of ExoU (e.g. oxyanion hole, active site serine, active site aspartate), it has been shown to have no phospholipase activity. This family includes ExoU from Pseudomonas aeruginosa and VipD of Legionella pneumophila.	1.17699e-48
NC_019729.1\|WP_015175665.1\|2155127_2155796_-\|cyanoexosortase-A-system-associated-protein	gnl\|CDD\|275015	TIGR04153, hypothetical_protein_L8106_04486, cyanosortase A-associated protein. Members of this protein family are found exclusively in the Cyanobacteria, usually usually encoded next to and in at least one case fused to a gene encoding cyanoexosortase A. Note that family TIGR04533 shows a similar relationship to cyanoexosortase B (TIGR04156), and no EpsI is found.	1.43905e-76
NC_019729.1\|WP_015175669.1\|2159504_2160110_+\|DUF1517-domain-containing-protein	gnl\|CDD\|369378	pfam07466, DUF1517, Protein of unknown function (DUF1517). This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.	3.02888e-31
NC_019729.1\|WP_015175674.1\|2165740_2166589_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.16858e-42
NC_019729.1\|WP_015175673.1\|2164240_2165443_+\|alanine-racemase	gnl\|CDD\|234600	PRK00053, alr, alanine racemase; Reviewed.	0
NC_019729.1\|WP_015175679.1\|2172017_2173421_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.21158e-29

>NC_019729.1|WP_015175673.1|2164240_2165443_+|alanine-racemase
MLSWEQTAAESPTKESRQTLLWDGDGELCQRAWVEIDLAALTHNVKQLKKLLSPHTELMAVVKADAYGHGAVAVSQTALQAGASWLGVATIPEGIELREAGIEAPILLLGATHTAQQVKAIAQWHLQPTICTAKQALIFSEVLAGLNQSLPVHAKLDTGMSRLGTPWQEATEFVQLVKRLPNLKLASIYSHLATADSPDPAVMREQHQRFQRAIEQIKIAGINPPRLHLANSAAALADPDLHYDLVRVGLATYGLYPAPHLQPIANLKPAMQVKARVTQVKTIEAGTGVSYGYQFIAQRPTQIAVIGIGYADGIPRNLSNKIQVLVRGQFVRQVGAVTMDQLMLDVTDIPDLEVGEVVTLLGKDGENQITADDWAVILGTISWEILCGFKHRLPRVAVHY
>NC_019729.1|WP_015175672.1|2162422_2164003_-|peptidoglycan-binding-protein
MDGLAYLHLAETWETVACQSRSTNSKMHLNLAYTPLLFFTIALTIFNLVNPALALKKGDSGPEVAELQKTLQNAGYFRGKATGFYGSVTQAAVKKFQAEKNLKVDGIVGPKTLSALKGKPEEASIEAAKKIAPNVDRPSPSPSATENTNKLEDTTKTQPQEPLFQEPSLPPFKTETSEDKKSELPTTKLVNPPDNTQGKMTLKKIIYGKISPKSIVYSGAGLFFAQNMMYSHTITVYDRNFNLVKTIPDTVNLSKFGFSKFKGNYQGSPVEAAFSTDGKYAYVSNYQMYGSGFSNPGSDRCSPAAKHDQSFIYRINTQTLKIEKVIPVGAVPKFNAVSPDNRFALSSNWCSWDLSVVDINKNLEIERVKLGAYPRGIVVTPDSKNAYVAIMGSSDIAKVNLIDFSVEWLRNIGNAPRHLTIDPKGNYLYATLNGEGNVAKIDLKTGKVVDKVSTGKAPRSMTISDEGKLLYVVNYFSNTVSKVRTSDMKVLQTVKVNSSPIGITYDPETNQVWVACYSGSIMVFQD
>NC_019729.1|WP_015175671.1|2161268_2162327_+|S-layer-homology-domain-containing-protein
MSSSQPPSGERNPLGLDELIAILVAFGTMGAILFWVTGKNPDRFNARNWQFPAVFSQPAVTPASPGILTPAPPNSDLPEAKLSRRESPATTPVPSKPDVAPVAPLGPVLPQNPPVGVIVVPPKPIVRSTPNPAITKPKADKPKADKPKVGPVIFSDVPDKYWARPFIVALVDRKIFADFTDSKFRPDEPITRAELARLIQRMSEDKEPIRKPIDFKDVKDKSPLAPAIEHTVKTGYLKGYPNNEFRPDKNIPRVEVIAALASGLSLKPSTKASKTLQVYTDRAKVPKWAVNKVAAATEAGIVVNHPKPALLQPNRTATRAEVAAMIYQAMAKKGKVPAKSSEYVVKPVKLSR
>NC_019729.1|WP_041623018.1|2160210_2161089_+|hypothetical-protein
MLRKLTIYLMALTLLWTATACGSPTPQPPANPPANSNVNTVRPAANNNLAQGQYPVQQATYNDADGEYSLMLLNTPAGSSPVYRTRDLQMARLTEEEISAGKKSYLNLDNNKAVLHLTEDFKIEYVHNVTETVTNPQTGQPQTVVVRQQSGFWAPFAGAVAGQAIGSLLFRPQYYMPPVYQPGIMTGYGAYGNTYGQAVEQYQTRYRTPPPEVRNRQVLRTTGRLRSPTYNQPVRPSVRPNGNRSTGSGYGGSTLRRSPNSTSPQQRRSPSFGSGRNSRQPSRTRSFGSRRR
>NC_019729.1|WP_015175669.1|2159504_2160110_+|DUF1517-domain-containing-protein
MNAWRDRFNQFTGKTRLAVCRVFVHLTGEEVAPLLGVLNRTARQAIDADGDIAVLGEGLVEICNHLLQYDNYWQAAANEGDVFWNESEAGDYVDELFTDSAERYLSEPQYSTSVYDKNSPLSLPVTRNVVVMLTVAYEGEVPALETDLADISALKVGLKAMINLHYQERLRAVQVHFSPAQLGDELTNDQVLVNFPELIPI
>NC_019729.1|WP_015175668.1|2158492_2159038_+|hypothetical-protein
MKKFQVLAGIASVVAIASSIAIGDAASAFPCSYSKSGAAKSGSATTLLGSGGSERMNPWKSYKTAALGFLGLAGVLGGGAAYMSYRAGKRASAACAAMTDNFEVFEEPIAPIADAAVREHLEVPALLDLAPAGAVAESADAVAAVREHPEAPGGELDLPVSPVAELSSEIAIEQVQSAIVK
>NC_019729.1|WP_015175667.1|2157028_2158135_-|dTDP-glucose-4,6-dehydratase
MTDNATQGMERYPRRLLVTGGAGFIGSNFVHHWCSSYPGDRVVVLDALTYAGNRQTLASLEGGENFRFVQGDICDRSLVDTLLKEENITTVAHFAAESHVDRSIIGPAAFVQTNVVGTFTLLEAFRKHFEAIDEASLKAQMRFLHVSTDEVYGSLGPDDPAFTETTAYSPNSPYSASKAGSDHLARAYFHTYGVPTIITNCSNNYGPYHFPEKLIPLMCINMLLGKPLPVYGDGQNVRDWLYVLDHCRALDAVIHRGQPGETYNVGGNNEVKNLDLVKMLCHLMDELAEDLPARPCEQLIAFVKDRAGHDRRYAIDATKIKTELGWTPSVTVEEGLRQTVEWYLAHREWWEPLLSEEYQTYYRKVYSN
>NC_019729.1|WP_015175666.1|2155795_2156647_-|cyanoexosortase-A
MTEINWLKHVQEPKYWLLGIACGLIALHLTLTSRTNDTDLFGTMLLFWGVVAFLIWERHESLTFESGVFASFFGTSLIALILLKSSSISGYDYFIRVVPFLSGISLALLASGTKGLKQYWQELLILGYTAIPPGLIGVFVDVALLTAKFSAFLLHYLGFEVVRKGVFLILEKGSVEVYHGCSGVNAMLQLLGLALVFLLMFPTTKGQKIILPFVAVITAFLVNAARVALLAVLVSLSQPEAFKYWHEGNGSVIFSMIAVFIFGLFCWFAILKDQPPNQEGQNC
>NC_019729.1|WP_015175665.1|2155127_2155796_-|cyanoexosortase-A-system-associated-protein
MAITSWKPVRLSLLAVTLGGVLLVAGKLVFYPSDGKKVATPFEFPESVPLADWKLNKSAPIELSDNSEFKAARKYEYQKNSMALEIEMRYAVNTIGDVEGMMKGHTVLKSYPGKLALANTQGAGFHGILQQQNRLYLSSCINPRGSATVTSQQFRYNRNTRDWQPNRILFWLLGRGNIQDRRCLWTQMSVPLDKKTPEDAKKILENAWVSWYEWWQPRFPDP
>NC_019729.1|WP_015175664.1|2154271_2154949_-|hypothetical-protein
MNDLQGEQGFSIYRLRWIGYGLLILSVLDAIAVLIPANFGNRLWELQTIGAVVERVPVPLLAMALIFFGEGYDRKGLEDVFLKVLSWVCLLLALVFLLMLPLGIFGAIYVNNQNNQQITTQANQQLAQLQQVEDRLKKGSPEDLKNLAGELTRLGVPADTQNPQQLKEQILSRITPAKERLQTQSAAVQSNQRLGLFKNAIKWLLGALISSVLFFTLWRGTDWAR
>NC_019729.1|WP_015175674.1|2165740_2166589_+|mechanosensitive-ion-channel-family-protein
MTVIQTFLPIAQTLYSQLDTERTQALAVAQEFSKKFVELGFKIVPQLLWAIGILLITRFAIGVVGRVTRRALSRTEATLRKFLVQAAEITILVVGVVATLNQLGIQTTSVVAVVGAAGLAIGLAWQNTLSHFAAGVMLISLRPFEVGDGIEAGDVKGVVDSIGIFSTTVVTDDRIKIIVPNNQLFNGTLKNTTAMGTRRVDLKIDIGDRPIRPTVAELLEIAHSHPLVLENPPPTCLVAEITPDTTILSLRPWCASVAYEQVRSQVQQYVKEAMDADKNQEP
>NC_019729.1|WP_015175675.1|2166636_2167776_+|patatin-like-phospholipase-family-protein
MSQWYPQQILQEPGVRITPTEKQTILSKFPPPDENGQIYADGVFEGGGVRGVAFLGALRCCSDLGIRWRKLAGTSAGAITAAVLATDLSIDDLEEILGQLDYSIFLTQKNSPLILNGDPADDLQSPAWTLLFLTISRQMGEYSAQPFRQWLETMLGRGNLHTFADVKQIVKDRELKVVISNLTRGEMLVLPDDLHRRESTDSDSLYEQLRLKSAEDFSVAEAVRLSMSIPLFFEPGKLGDDLIVDGGILSNFPLWIYDKQSVGSTPVAPRWFTFGFRLVDTGIESKVKIDTPLSMLAAMFRTMMKARDRYHQREMDKGRVINIDVTEAGVTTTDFNLDGDRKAHLYRLGYLYTKRFFLSSNFSWEKHLKARGFGEEAGG
>NC_019729.1|WP_015175676.1|2168063_2169290_-|alpha-1,2-fucosyltransferase
MTNPKYTNQSETKRVFDVLATLDKDAKNIQSPLNIDTEISSQSVLTMSSLGQLGRFGNQIFQYAFLRICAHKTGAIVECPPWIGQLLFGHNDAPISRRLEPAIERKEDEKNLFDIVPELVPYVEKIAGAKSRRLGSEVLENGIENVDLWGFFQISTRLLAPYQDYIRSLFQPVSELNFSLEEGLKILRSKGKTIVGIHIRRGDYITQVRTGFTLVFPESWYCEWLDTIWNDLEDPILFLCSDDIERILPAFEKFSPVIARDLQVKLPEVMQDKNIEFYIDFFILSKCDIVATSNSVFSFAACLLNEHGRMFVRPHWNFSSRFIVFEPWDSEPLLWIGDGQPKFFKSLPEVVFTTYATQGLWSTLKSLFFFAPRSYIKELAIRAYLGYKIQGFVGVFKTFASILGWYSW
>NC_019729.1|WP_015175677.1|2169627_2170080_-|hypothetical-protein
MLRKAFIGLISFALLTIITLSSLTSQVSAMPTCSNETLKGLYVHTSSGFRGTAAPFIPLATLRTAEIQNGKVKGRGTLSLGGDVKNYRVEGTYEVSSDCTVIFSHSAISDDGSISQASKHFGIIVDRGKKVYYIQQTPGINETGIYEKIS
>NC_019729.1|WP_015175678.1|2170545_2171757_-|transposase
MLVFEFKAYGKKQQFDAVDEAIRTVQFIRNKALRFWMENEKVDKYALNKYSAVLAKEFPFCDDLNSMARQSSSERAWSAISRFYDNCKKKVPGKKGFPQFQKDNRSVEYKTTGWRLADDRKSITFTDKKGIGKLKLKGTRDLHFYQRSQIKRVRLVRRADGYYVQFCIQVDRSEKIEITGNAIGLDVGLKEFYTDSNGIAVDNPRFLRKGERRLKKAQRRVSKRVKGSQNRKKARAILGKRHLKISRQRKDFAVKLARCVIQSNDCVVYEDLRIKNMVKNHCLAKSINDASWYTFRIWLEYFGKVFGRITIAVPANGTSQECSSCGTIVKKSLSTRTHACRCGCVLDRDWNAAKNILSRGLSTAGHVGTWILDPNACGELTATDVEVILHRQVDSANQESPRL
>NC_019729.1|WP_015175679.1|2172017_2173421_-|transposase
MRIGYDAMKATYQYQFYPDTNQKLTLNHWLRICRYWYNRQLGDRFDWWEMNRTAINACPLIASISAPRAKPNYYSQKQQLPVIKKDLVKVFHSGELLDFKQVDSTVLQDVSKRVDKAFERFVIGDSKGGRSGKPRFKTEADYRTMTFSTANSDWIKLVRKNWLYIRLPKLGIIKVRMHRLIPDGFSVKQISVTRKADGWFIQIMLEDASVPQFIPDKITPNWNNSIGLDAVLHEDVYLASSSGEKLPSLKPLRKNQSKLDRISRKRNKQKRGSKSRRKLAKKEARQHQKIARSRQDFHYKTAHKLVKSGAKFFFHEDLNLKGLTKRNKVKQDDEGNYLPNGQSAKSGLNKSWLDAAFGQFFKTLEYIAEKAGSVVVSQKPAYTSMVLCYRNEIIFTDCGIRNYWDEQNSLMVDRDINAAINLKRLGLDIFPSIKRRSGNLSVVGTMDDRTVKEILHTLHRAAKKPTS
>NC_019729.1|WP_015175269.1|2173466_2173880_+|IS200/IS605-family-transposase
MSTDFIHKARGVSDLKCHLVLTTKYRRKVLTDQMLSRLEEIFKNLMEKWEGRLVEFNGERDHVHLLLQYTPQTEPSKLINNLKTVSSRYLRKEFVDEVEKVYWKDVFWTNGYFIASCGGVTVEQLKKYIEGQDRPVE
>NC_019729.1|WP_015175680.1|2174020_2174959_-|serine-hydrolase
MTFFHKDEQLETLGSSIIDSALSEFTGLSGDRLAITWIVYDPPVRVNTGGGLSAEEFWKYQPRGFSARASERIYPASIVKLFYLVAIWEWAQKGMIKTSPELERAVRDMIVDSSNDATSLVVDALTGTTSGPELSPGPFETWKQQRNIVNRYFQSLDWPELQNINVNQKTWCDGPYGRERAVLGELMENRNMLTTNAAARLLHSIIGGVAVSAKASQEMMGLMKRSLDPAELQADPENQVTGFLGGGLPESAKLWSKAGLTSQVRHDAAYIEISGLRPYLLVVFTEGKDNSKNEEILPFISRQFVEAMKVLN
>NC_019729.1|WP_015175682.1|2175981_2176986_+|glycosyltransferase-family-2-protein
MDAALFLEKLARQQAEAEVVLDVSVVVPVYNEVESLPHLIEAIASSIQPSGLSYQIICVDDGSKDGSGELLQQLASSRDDLCAVILRRNYGQTAAMSAGFDRARGRAIVTLDGDLQNDPADIPLLLAKLDEGYDLVSGWRKNRQDNTISRLIPSKIANWLIGRVTGVNLHDYGCSLKAYRSELVADLNLYGELHRFLPALAFIEGARIAELPVRHHARRFGQSKYGIWRTFRVLMDLLTISFMKKFLTRPMHVFGLLGLSSMTLGTVLGIYLTVLKLGFGESIGNRPLLILAVVLLLTGVQLFCFGLLAEVMMRTYHESQGKPIYRVREVFGSK
>NC_019729.1|WP_015175683.1|2177111_2178284_-|IscS-subfamily-cysteine-desulfurase
MSARPIYLDNHATTPVDRRVLDAMLPYFTEQFGNAASINHAYGWEAEAAVKQSRQIIAEAINASPEEIVFTSGASEANNLAIKGIAEAYFSKGKHIITVKTEHNAILDPCTYLQKLGFDITVLPVKSDGLIDMGDLIKAIRAETILVSVMTANNEIGVIQPIAEIAAICRGNDILFHTDAAQAIGKIPLDVQEMNIDLMSLTAHKIYGPKGIGALYVRRNKPRVQLAPQMHGGGHERGMRSGTLYPPQIVGFAKAVELAIAEMPSETERVVNLRQRLWENLSELGDVFLNGHATKRLPGNLNISVGGVDGQALMLGLQAAAAVSSGSACTSAKISPSHVLAAIGRSDKLAYASIRFGIGRFNTEAEIDAVSEHAIATIQSLRQAQKVNQF

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Crispr_ID: NC_019729_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_23

2190714-2190808

TypeV

Consensus_repeat	Method
AACAGTGACATAACTATCTTTCCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_23

>merge|NC_019729|23|2190714-2190808|CRISPRCasFinder
AACAGTGACATAACTATCTTTCCGATCGAAATGATGAAACATAGATTCTGCGATCGCGATGCTAGCCCGAACAGTGACACAACTATCTTTCCGAT

>NC_019729|23|22|2190714-2190808|CRISPRCasFinder
AACAGTGACATAACTATCTTTCCGAT	CGAAATGATGAAACATAGATTCTGCGATCGCGATGCTAGCCCG
AACAGTGACACAACTATCTTTCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175693.1\|2192395_2193547_+\|4Fe-4S-ferredoxin,-iron-sulfur-binding-protein	unknown	unknown	gnl\|CDD\|372225
NC_019729.1\|WP_015175697.1\|2199113_2200574_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_019729.1\|WP_015175694.1\|2193717_2195484_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226372
NC_019729.1\|WP_015175682.1\|2175981_2176986_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_019729.1\|WP_015175698.1\|2200901_2202785_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_019729.1\|WP_015175695.1\|2195873_2197550_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|224271
NC_019729.1\|WP_015175700.1\|2205434_2205665_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175685.1\|2179264_2180587_+\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|225930
NC_019729.1\|WP_190274356.1\|2182550_2183375_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175686.1\|2181014_2182235_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175688.1\|2183645_2184857_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622452.1\|2190158_2190656_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274421.1\|2202889_2205385_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_019729.1\|WP_015175702.1\|2206913_2207300_-\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NC_019729.1\|WP_015175683.1\|2177111_2178284_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_019729.1\|WP_015175684.1\|2178380_2179049_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175701.1\|2205679_2206765_+\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	unknown	unknown	gnl\|CDD\|234828
NC_019729.1\|WP_015175696.1\|2197553_2198684_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NC_019729.1\|WP_015175690.1\|2187057_2187696_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175691.1\|2187776_2188877_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175693.1\|2192395_2193547_+\|4Fe-4S-ferredoxin,-iron-sulfur-binding-protein	gnl\|CDD\|372225	pfam12617, LdpA_C, Iron-Sulfur binding protein C terminal. This domain family is found in bacteria and eukaryotes, and is typically between 179 and 201 amino acids in length. The family is found in association with pfam00037. LdpA (light-dependent period) plays a role in controlling the redox state in cyanobacteria to modulate its. circadian clock. LdpA is a protein with Iron-Sulfur cluster-binding motifs.	3.15929e-114
NC_019729.1\|WP_015175697.1\|2199113_2200574_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.1032e-51
NC_019729.1\|WP_015175694.1\|2193717_2195484_+\|AAA-family-ATPase	gnl\|CDD\|226372	COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria [Function unknown].	3.32286e-122
NC_019729.1\|WP_015175682.1\|2175981_2176986_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.70523e-77
NC_019729.1\|WP_015175698.1\|2200901_2202785_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.44454e-54
NC_019729.1\|WP_015175685.1\|2179264_2180587_+\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	2.17756e-101
NC_019729.1\|WP_015175696.1\|2197553_2198684_+\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	6.56762e-28
NC_019729.1\|WP_190274421.1\|2202889_2205385_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	3.44184e-143
NC_019729.1\|WP_015175683.1\|2177111_2178284_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_019729.1\|WP_015175695.1\|2195873_2197550_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.31457e-71
NC_019729.1\|WP_015175701.1\|2205679_2206765_+\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	5.98264e-113
NC_019729.1\|WP_015175702.1\|2206913_2207300_-\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.3978e-29

>NC_019729.1|WP_041622452.1|2190158_2190656_+|hypothetical-protein
MTQQNPILPNSLQNGWQVFNKVPGCRWFDPPTTYGFEFQSLEDTLFTEILDFPVGDDQEFTVAVGDSILGNFSPGDKLDFISLLGYPVDNFRITGIDSLFGPTAETAFPIQLAFKEREGSFKMRQIPKPIDAEAVPEPGSILAAKGMLLWFAGMRYILRKKRQAG
>NC_019729.1|WP_015175691.1|2187776_2188877_+|hypothetical-protein
MQFLLLPKVWFASMVPIALITEPVFAFQLRGTTASSSQETYVTIPDTGDSGKITVTTKDIKEIKRGGSDALLDLLRPYQQQGWKFKQGGNLGGAFNVISYYPCAPITQCGKEMSIFPELGIPPSGKQMGLGASIWIDYEADPNDEPKFGQTYWIQRVNVNTGGQPVSAYGMTATSFNLIDNLSSNTPFYLAADYLGRFNPQTNLPSYSFLDVPYVLGTNSNPSYIYNHDWNFELYLAYLRPNQEVTIYNGISWGWTNTFTRPKTTKKFSDSLASGLEVDRFNLSDLTPGSKYRAWTNNDLPSNRCNPNTFLSTDNDSGFQLGFDDDSSPVGNGFASALTGTVGSSGNINLDVRAAGGGARGQDTGN
>NC_019729.1|WP_015175690.1|2187057_2187696_+|hypothetical-protein
MSHFKKAKLIDVMKHLGLFLLALILLGVMALSHRSAGATTPSDSSIKLETLVPERVLTIPQNEPSNYTPIQFGVRITNNTLTAFRVSLDSLTPEFMAVDGENFYAGKIQVSLVFRTESDFPLVRAGESLNLFWEGKFYWGAQNIYLQIPDKYSNLWFFRGFKPGISKVRFTYTNAEAQRWYRDREKAERKQLMGVLTGNLSSPWTQFSFVLP
>NC_019729.1|WP_015175688.1|2183645_2184857_+|hypothetical-protein
MSHFVKAKPIDVIKHFALFLLALIISGVMALSHVSAGATAPSDIGITRVTELKSVDLPDSKTVEGEGISMNISVPYFILPIPEKKLDISSPLSFVVSIANNTQNFIRADNDTLIPELVGQDGRSLPLQISRDRQSKMRNLCWLVEPGTTRLFRSGGLAWNNNKLQLRGDAGLGYFWYFDELKPGEYQLRFIYDSPGGKVSCYDVETQKLMTVKGLGKGEGATNFIPIRVVQPVSINSNTLEIDGIRFELFMPERVLTIPSNQPNAATFVKLALRITNKTVTSLRFQQLNTTLQILGQDGKKLRWKGRGGGNLLAGYNCPLVEPGENVTFSLDAKLFWENNLLLLGRSERSGGFIYFDEFKPGKYQIRIGYNPGAEVSCTQELSGDTWKGLGATPFVGFNLVEH
>NC_019729.1|WP_190274356.1|2182550_2183375_+|hypothetical-protein
MPREVLAIEEVESERGYNLTSVEATNKNAVEIDGIRFESIMPEPVLTLPKKQPDTNGVIALGHVPRLLAGAVDSELGRATELTSFESTHSNIDSNAVERNGIRLEILVPDRVWRIPENQPNATTPVRIGFQLTNNTPYPIRFPPLDPLLIFPLEIVDADGNLLRRSGGRGMLRKSPQLACPLVQPGESLTFFLKAELFWQSNQLLFGGNDGLGGGWTFDIRPGNYQLRLRYVNSRPVLFCDEPQIYEYKLTRGIWTGQIVTPFVKFRVVQSESK
>NC_019729.1|WP_015175686.1|2181014_2182235_+|hypothetical-protein
MSHFVKAKLIDAMKHFALFLLALILSGVMVLSHASAGATTPSDIGITRVTELKSVDLPDSKTVEGEGISMNISVPYFILPIPEKKLDLSSPLSFGVSIANNTQNFIRADNDTLIPELVGQDGRSLPLQKARDRQSNTRSLCGLVEPGTRKLFRSGVLTWNNNKLQLKGDAGLGYFWYFDELKPGEYQLRFIYDSPGGKVSCYDVETQKPMTVKGLRRGQGATNFIPIRVVQPVSINSNTVEVDGIRFEIFMPERVFIIPSNKPNATTPVKLALRITNKTATSFRFQQLNTTLQILEQGGKKLRLKGRGGGNLLAGYNCPLVEPGESVTFSLDAKLFWENNLLLLGRSERSGGFRYFDELKPGKYQIRIGYSPGVPEVSCTQNFSGDTWKGLGATPFVEFNLVEIEP
>NC_019729.1|WP_015175685.1|2179264_2180587_+|four-carbon-acid-sugar-kinase-family-protein
MSSVKPKIIVLDDDPTGSQTVHSCLLLTRWDEDTLRLGLRDKCPIFFILTNTRSLTPEKAASVTREVCQNLKRAIASEEIEDFLIVSRSDSTLRGHYPIETDAIAEELGPFDAHFLIPAFFEGGRITRHSVHYLIVNSVPTPVHETEFAKDSVFGYSHSYLPDYVEEKTKGRIRADAVDRILLADIRYGSLDRLMEMEDNQCAVVDGQSQGDLDTFAKHILNAVSQGKKFLFRSAASILTSLADLGPQPVAADEMAKYVRDGKPGAVIVGSHVKKTTEQLERLLKEPNTVSIEIDVSHLLEDSPEYRTQMLDEILEKASTAHADGKTPVIYTSRQELQFENAEIRLKFGEAVSALLMDIVRGLPAAIGFLISKGGITSNDVLSTGLSLKSVRQIGQIIAGCSVVKTEADHPLFPNLPVVLFPGNVGDSHALATVYKRLSK
>NC_019729.1|WP_015175684.1|2178380_2179049_+|hypothetical-protein
MRADIQGLEITVGELKHLTGVGPDRVYRPPTATKFAREALKTVGLIFLVLISCWLLVAIFPRAYLLWFALHFAAIVGLIFEDAWKIRCSRQNKDLINLFDDVDRYNGIIEALAINDRIEDAGNAGVKIGDRAKVIAALQLIRDDLVRALKTERILRENKKFVDTNSELFANNLRTLNALQISDRSSQPGRLLNEALQVAVGVQAEMKKLQDRNAANFKKGKS
>NC_019729.1|WP_015175683.1|2177111_2178284_-|IscS-subfamily-cysteine-desulfurase
MSARPIYLDNHATTPVDRRVLDAMLPYFTEQFGNAASINHAYGWEAEAAVKQSRQIIAEAINASPEEIVFTSGASEANNLAIKGIAEAYFSKGKHIITVKTEHNAILDPCTYLQKLGFDITVLPVKSDGLIDMGDLIKAIRAETILVSVMTANNEIGVIQPIAEIAAICRGNDILFHTDAAQAIGKIPLDVQEMNIDLMSLTAHKIYGPKGIGALYVRRNKPRVQLAPQMHGGGHERGMRSGTLYPPQIVGFAKAVELAIAEMPSETERVVNLRQRLWENLSELGDVFLNGHATKRLPGNLNISVGGVDGQALMLGLQAAAAVSSGSACTSAKISPSHVLAAIGRSDKLAYASIRFGIGRFNTEAEIDAVSEHAIATIQSLRQAQKVNQF
>NC_019729.1|WP_015175682.1|2175981_2176986_+|glycosyltransferase-family-2-protein
MDAALFLEKLARQQAEAEVVLDVSVVVPVYNEVESLPHLIEAIASSIQPSGLSYQIICVDDGSKDGSGELLQQLASSRDDLCAVILRRNYGQTAAMSAGFDRARGRAIVTLDGDLQNDPADIPLLLAKLDEGYDLVSGWRKNRQDNTISRLIPSKIANWLIGRVTGVNLHDYGCSLKAYRSELVADLNLYGELHRFLPALAFIEGARIAELPVRHHARRFGQSKYGIWRTFRVLMDLLTISFMKKFLTRPMHVFGLLGLSSMTLGTVLGIYLTVLKLGFGESIGNRPLLILAVVLLLTGVQLFCFGLLAEVMMRTYHESQGKPIYRVREVFGSK
>NC_019729.1|WP_015175693.1|2192395_2193547_+|4Fe-4S-ferredoxin,-iron-sulfur-binding-protein
MTEHYHPLNSLKDGHWFKLICGASFQHLPAVRNLTLAYTLAGADCIDVAADPAAVAAAKEALQVASELQARTHNRRFGGKGLPLLMVSLNDGEDPHFRKAEFNPADCPADCWRPCEKICPAEAIVFQSAGSGFSGVIDQQCYGCGRCLPICPSQLIYTRSYVSAPAAIAPLILQSGADALEIHTQVGREADFARLWSSIAPWVAQLKVIAISCPDGDGLIDYLRTLYQIISPLPCPLIWQTDGRPMSGDIGTGTTRAAVKLGQKVLAAQLPGYVQLAGGTNAHTVSKLRAEGLLLDGGKNLSVPPVPYIAGVAYGSYARVLLSPILEQLETMQTDRAYAVPVAVARPGAGVQTSRLPQLEAVPELLSQAVSLACSLVSQLKEF
>NC_019729.1|WP_015175694.1|2193717_2195484_+|AAA-family-ATPase
MQITDDLNRLLDIVPDEIRQPLEQHPQRNNLIEIVMDLGRQPEARFPSLAEPLSQTPVSKADLNYCIERVGHFGGDNRAGIEQTLHRISALRNRSGEIIGLTLRVGRAVFGTIGIIRDLVETGQSILMLGRPGVGKTTALREIARVLADDLEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSRPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLENLMKNPTLADLIGGIQAVTLGDDEARRRGSQKTVLERKSPPTFEIAVEMLERQRWVIHERVADSIDTLLRGREPNQQIRSVSETGEVIIEQESATPPARFPGIAASGSTAAVSAIRPVTPLSGWRSAGKMVPMPAPSQNFAAKSAPVAETRYFEQLLEESLSVEPVPKPGRFSQNVGPNGEDLPLHVYPYGIARHQLEQVISTLNLPVLLTKDIESADVVLALRSNVRNQSKLRHLAKTRQVPLHTIKAGTIPHVARALRRLLDMDDPGTPEVADLALFARSGSSDELEALEETRLAVEQIVIPKGQPVELLPRSPNVRKMQHELVEHYHLKSHSFGEEPNRRLRIYPA
>NC_019729.1|WP_015175695.1|2195873_2197550_+|tetratricopeptide-repeat-protein
MNDSIVQLFINLITAEIGVRIRSQDRAGLSHKIMTRMRAKKIAEPEKYYQLLTAKNFESKNEWAELVLLLTTIESYFMRDKGQFALLKRVIFPELIEQKRNLHKTLGMQPTLRIWSAGCSTGEEPYSLAIVLKQLIPDWEQWKILILGTDINEKVIKKAPQGVYSHWSFRLVEPQIQQQYFHQRQNDWEINLELRESVNFSCLNLITDEFPNIYQNIYNIDLILCRNVFVYFEHKYISLVLKKFSNTLRPGGYLMTGHAEVYGQIMNEFEPKIFPESVVYQRRDSVPEEGCQIESRVATVGEANSAFREFPKADTMGDESGELLTGETMPPSFTTNSNFPEIEMPPVLKISNPLGKILPSRYLEDGLPNNDVSVTQQIIAENTQNKTPQMLILEAKKSFNNKDYAEAINKAQEAIDLQGHNFDAYFLIAQVQANSGNYSQAIEYCKRARKVEPGSVYTDYLQAQIAEEQGQLETAKNLLKRTIYMCPSFVSAYIELGNIYHKEGQLKRALKMYNSSCEILKALPPNTPIDSQGKMTASQVLMNVKKKLLKLYSKETVR
>NC_019729.1|WP_015175696.1|2197553_2198684_+|chemotaxis-protein-CheW
METKPYLIFEQNGFLCGIEACYVREIFFLPELTAIAEAPQDIVGAIDLRGEILPVMDLNLRFGYAWQEYSVTDSTIVIEWQESKVGIIVNQVREVKELSEDAITSQLSYGRDNSEASHHFVAGFARCEADIIMLLNIDRLIRSSPEKLEGSWPVSPSNAGNQETAGESDTESLQGQINAKLLGKNSKILSNRHVFCPQATPEEKAIFKSRANNLRLQGEGEYDAVINMSLAVLVLNGEYFGIPLDVVREFTDINQVTPVPCTPDRIVGNMNLRGEILTLIDIRTVLNMSLNISDAANYLSKAIVVEVGDLVTGIVVDEILDIIYLNVSEIAAVPAALHSANREYLRGTAIYGEKILAILNLQKLLTKGGVVVDEEV
>NC_019729.1|WP_015175697.1|2199113_2200574_+|methyl-accepting-chemotaxis-protein
MFSKLIKLNIRNRMLLAYVAPATIYLGFPMLVYTTTNQVLNNFQEVERIENVIRYANDMSTGAEQMVRGMRGYFINKNPKFLQDFQAGRELALQSGKSADLKIENPEQRSRLERMLDLCQEYYDGSNQIVVLVQQNKRAEALAIFNTGKQTKFVEEFVTLNKQFREIEVKAINQATERTKQSLVFLLSALVFGSVFLLVLGAVIAWLISSGIAQTIDRAISSIAASSTEIAATVEEQERMASQQAASVNQTTTTMDELGASSRATSQQIETAVVQAMQALNLAGGGTKAVEQTLEAMATLKTKVQDIQGQIIELSEQTDHIGNISTVVSDLANQTNMLALNAAVEAVRAGEHGKGFGVVASEIRKLADRSKKSGSQINLLVADIQRAINSTVMVTEEGTKTVESGVNIASETAAAFAGVANAINNVVLSSQQISLNAKQQSIAIEQVVQAMNSLNQAAAQTACGISQTKVGTQKLNEAALDLKAVL
>NC_019729.1|WP_015175698.1|2200901_2202785_+|methyl-accepting-chemotaxis-protein
MMNKFFQKMQHRLLILLILSTLIPVSIVGWYGISSSTEALQKLALITLSDSVNSTANQMINKLENLRADILFLPKTPPVQGMIRAKEGNGVDKKTNSTYKDWVYRMQLTFLAMMEAKPYYMQLRYIDNSGKEIVRVDSDGKNIQVIPDSQLQNKADRDYFRATMKLKSGEVYVSSLELNQERGKIEIPYKPTIRYATPIFNPKGERQGILISNALGSTLIDIVKKFNHELSDQSFILNQDGYYLAHPNPKKAWGFELKTKENVKNDYSGDIVAKILSGGKGNIDNRDLVISYNTVFPSKENTNIFLVIVEASPKKLLFYSIDYLQKIAALIAIVSLAVVLGFGWFFLQKIVALIRGMIYQVSSFSLQIESNMNRQEQIANRQFLSVNQTTITLENLGRSSQQTAEQAESVAVAARQALNLAEEGTKKVDQTLNQMLNLREAVVAISKQNHRLDDSTSQIGNISTLASLVSDLASQTNMLALNAAVEAVRAGEYGKGFAVVASEIRKLADESQQAAQKINGIIPEIKSAIDSTLKATEDSRKTVAEGVKTAQDTAEAFTGVREACNLVFASNQQISFNVKHQAIAIQQVGDAMISMKESASQTVSGIDQVKIGTQQLTEAAFNLKEVV
>NC_019729.1|WP_190274421.1|2202889_2205385_+|hybrid-sensor-histidine-kinase/response-regulator
MIEDRELRDVFKVASQEHLQKLDDGLLYLEQHPDDLAKLEQLLRETHSLKGDAGMLGVKNVASLAHQMEHILGSVKRGETQLNSDISDRLSQGLDAMRKLVHEAVTGEDSGVNTFYILASMMGASSQPQPQAAASIVDPSSSQVPEQPLVEAQFTEPSTKELETNVETSEVLNLEKNSSFLPLQSKPEFILPAQNLPAPSGPATESASQSAVSASSTSSYRIETIRVATQNLDDLMTQAGELTVTKTRLGHRVAELEQITTLWEEWSREYFVTSLTVDRMQIDENGIKANGKFNQLQDYYQRTEERLERLGTLVNRLRNRVYEDTARLELIAEALESGIRTLRLLPLSTIFNLFPRTVRDLAKREGKQVSLVIEGGETTADKRILEEMKDPLMHIIRNAIDHGIETVDERQKIGKPPVATLRIKGYNIASNIIIEVADDGRGLNLESIKQTAVKRNICTIEQLAEMTENQVKSLIFTPGFSTKKFVTEVSGRGVGLDVVRTNVEALKGSIQVESLPGKGCTLRLQISTSLATANVLIVLVEDIPYALPVEFVDTAQQVSQSEIFAIEGKETILSKGQPLSVAHLTDLLELNNRKGWQKKRYFRQETGSKMLKKKSQEFLNSTSSKIPCIVLKVGEERLGLFVDALIDEQDVVIKPQSKLLKRVRNVSGATILGTGEVCMVLNPHDLIKSVRQQVSSRGVSGARSQLETATRKQVILLAEDSIATRTQEKRILEGAGYEVVTAVDGLDAFHKLKTRDFDAVISDIQMPNLDGLALTIKIREQKEYSELPIILVTSLASDEDKKRGADAGANAYIPKGTFNQDVLVETLKRLV
>NC_019729.1|WP_015175700.1|2205434_2205665_-|hypothetical-protein
MGNGKWGMENREWGMGNRALVLPFDLLPFGEAERANRAGRVAELSTSRSVTAQSKYWALGIDALVMAHWALDIGPC
>NC_019729.1|WP_015175701.1|2205679_2206765_+|chemotaxis-specific-protein-glutamate-methyltransferase-CheB
MLSPIKLLLVEDSPVVTLVLKRIFESSPEIQVVGTACNGLEGLELIPKLQPQVICTDLNMAPMNGLEFTEEVMKKYPLPILVISASVQANDTQNVFQLLKAGALDVFPKPIGGLVSDYAHLATQLIAKVKILSGVKVFTRHPKKTPTEDNNQIVKINQAPVPNYKFSNENVKAQTIKVLAIGASTGGPQALYAIISKLPASFPVPIICVQHISEGFLQGLVDWLGYESKLPVKIASFGELPQAGTVYFPPEKRHLELDSQGRFVYSEAAHVAGHCPSVTVTFKSVANFYSRAAAGVLLTGMGRDGADGMLAIARQGGLTIAQDEASCIVFGMPKEAIALGAAQYVLPVSAIAPLLLAKLKI
>NC_019729.1|WP_015175702.1|2206913_2207300_-|response-regulator
MSASSSQVPTILAVDDSVVMQGLVKQALSKEFRVLVTDNAVDALSTIYHEQISVLLLDVSMPGIDGLELCRTVRSLPQFQNLPIVMLTARDGAFDKVQGRLAGATEYLTKPFDADKLREVIGKFIKIK

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Crispr_ID: NC_019729_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_24

2390640-2390768

TypeV

Consensus_repeat	Method
CCTACTCCCCACAAAAAAATTGAACTATAAGTGGAACAG	CRISPRCasFinder

1 spacers

c2c9_V-U4,Cas14c_CAS-V-F

The CRISPR arrays of NC_019729_24

>merge|NC_019729|24|2390640-2390768|CRISPRCasFinder
CCTACTCCCCACAAAAAAATTGAACTATAAGTGGAACAGCCCCGAAAGCCTGTTCTAAATAAGCCTTTCACGGGCAGGGAGGATGCCCAACCTACTCCCCACAAAAAAATTGAACTATGAGTGGAACAG

>NC_019729|24|23|2390640-2390768|CRISPRCasFinder
CCTACTCCCCACAAAAAAATTGAACTATAAGTGGAACAG	CCCCGAAAGCCTGTTCTAAATAAGCCTTTCACGGGCAGGGAGGATGCCCAA
CCTACTCCCCACAAAAAAATTGAACTATGAGTGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175826.1\|2391093_2392953_+\|NAD(P)H-quinone-oxidoreductase-subunit-F	unknown	unknown	gnl\|CDD\|236008
NC_019729.1\|WP_015175833.1\|2398508_2398727_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019729.1\|WP_015175834.1\|2399082_2400294_+\|transposase	Cas14c_CAS-V-F	-	gnl\|CDD\|223747
NC_019729.1\|WP_015175827.1\|2393057_2393777_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239473
NC_019729.1\|WP_015175824.1\|2388812_2389520_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NC_019729.1\|WP_015175835.1\|2400647_2400860_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_019729.1\|WP_015175821.1\|2384321_2384906_-\|PAP/fibrillin-family-protein	unknown	unknown	gnl\|CDD\|309752
NC_019729.1\|WP_015175822.1\|2385064_2386741_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_019729.1\|WP_015175832.1\|2397906_2398377_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175818.1\|2381428_2382097_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015175828.1\|2393881_2395396_+\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|180945
NC_019729.1\|WP_006631296.1\|2387151_2387391_+\|DUF3134-domain-containing-protein	unknown	unknown	gnl\|CDD\|371474
NC_019729.1\|WP_015175823.1\|2387521_2388637_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_019729.1\|WP_015175831.1\|2397658_2397865_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175830.1\|2396079_2397402_+\|CO2-hydration-protein	unknown	unknown	gnl\|CDD\|370890
NC_019729.1\|WP_015175819.1\|2383539_2383800_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175820.1\|2383964_2384204_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019729.1\|WP_015175825.1\|2389586_2390594_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274884
NC_019729.1\|WP_015175829.1\|2395590_2395977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129260
NC_019729.1\|WP_015175249.1\|2382234_2383377_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175826.1\|2391093_2392953_+\|NAD(P)H-quinone-oxidoreductase-subunit-F	gnl\|CDD\|236008	PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F; Validated.	0
NC_019729.1\|WP_015175833.1\|2398508_2398727_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.35743e-07
NC_019729.1\|WP_015175834.1\|2399082_2400294_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.37636e-54
NC_019729.1\|WP_015175827.1\|2393057_2393777_+\|carbonic-anhydrase	gnl\|CDD\|239473	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	2.06677e-76
NC_019729.1\|WP_015175824.1\|2388812_2389520_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.7931e-21
NC_019729.1\|WP_015175835.1\|2400647_2400860_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	3.14659e-06
NC_019729.1\|WP_015175821.1\|2384321_2384906_-\|PAP/fibrillin-family-protein	gnl\|CDD\|309752	pfam04755, PAP_fibrillin, PAP_fibrillin. This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.	3.73271e-65
NC_019729.1\|WP_015175822.1\|2385064_2386741_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.07323e-32
NC_019729.1\|WP_015175818.1\|2381428_2382097_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	7.87654e-25
NC_019729.1\|WP_015175828.1\|2393881_2395396_+\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|180945	PRK07363, PRK07363, NADH-quinone oxidoreductase subunit M.	0
NC_019729.1\|WP_006631296.1\|2387151_2387391_+\|DUF3134-domain-containing-protein	gnl\|CDD\|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	3.40755e-24
NC_019729.1\|WP_015175823.1\|2387521_2388637_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	1.84727e-130
NC_019729.1\|WP_015175830.1\|2396079_2397402_+\|CO2-hydration-protein	gnl\|CDD\|370890	pfam10216, ChpXY, CO2 hydration protein (ChpXY). This small family of proteins includes paralogues ChpX and ChpY in Synechococcus sp. PCC7942 and other cyanobacteria, associated with distinct NAD(P)H dehydrogenase complexes. These proteins collectively enable light-dependent CO2 hydration and CO2 uptake; loss of both blocks growth at low CO2 concentrations.	0
NC_019729.1\|WP_015175820.1\|2383964_2384204_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.95898e-06
NC_019729.1\|WP_015175825.1\|2389586_2390594_+\|glycosyltransferase	gnl\|CDD\|274884	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase. Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin.	2.42176e-37
NC_019729.1\|WP_015175829.1\|2395590_2395977_+\|hypothetical-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	0.0014351
NC_019729.1\|WP_015175249.1\|2382234_2383377_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.61002e-53

>NC_019729.1|WP_015175825.1|2389586_2390594_+|glycosyltransferase
MNSDVFFPQVSVVVPVYNGEGDLPDLIECLRSQTYPPHRVEYLIVDNNSRDRTSTILQTAASNPPSVPPSVSGGSNFNRITIRHLTENQIQSSYAARNQGIRASTGEIIGFTDADCRPESDWLENLVKPFVDLEVGISAGEILALPGKTILEQHADRQNTLSQKHTLAHPFCAYGQTANLAVRKQVLETVGLFRPYLTSGGDADLCWRILRETSYKMYFAENAIVRHRHRSTLKQLQSQWYRYGESNKYLHELHGVDLMREFTTGEYFYRLARWLLKEFPVAAAKSALAKPSKRIGSSDLVDLFDTPIGLLNVRARSMGQRQAKLPLAAWEIERF
>NC_019729.1|WP_015175824.1|2388812_2389520_+|L,D-transpeptidase
MELKKIRVNIWITVSSASLLLLAASSVFYWNLVRLGYAVPIPYILDVFCLNNCPADDLNILHTQFPPDNLLNYDKSLIQILGEPDKLDKNRISILVEKSKYRLTVYDSKKPVKSYPVVFGGNPAGDKLKAGDLRTPEGVFSIKDMYPHESWSKFLWLDYPTKQSWRKHIKAKQDGTIGWGDSIGSEVGIHGVPANSANIIKNRSNWTLGCVSLENKDVEELYQFVEKGTEVEIIR
>NC_019729.1|WP_015175823.1|2387521_2388637_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MDNFLDEKIPFSLPFKLTGRNLFLLLGLGLGTLAIGLDLAAGRFLNLPASLFMPLIVCALVASGLGYAVVPVLQQLKAGQIIREDGPQAHLKKAGTPTMGGIFFVPAGVAVALLWSKFNSDVVAVSALTLAYGFIGWLDDWQILRRKSNKGISPRMKLALQISFAALFCLWLMFHQPAISTNVALPFGWVLPLGLLFWPLAGFVLVAESNATNLTDGVDGLMGGLGAIALLGLGASVASTSPELMIFCACISGSCFGFLAHNRNPAKVFMGDTGALALGGALGAVALLTNSLWILLIISGIFFIETLSVIAQVGYYKATKGPDGIGKRLLRMAPLHHHLELCGWLETQVVGIFYITNGVLVLMILMLTSNS
>NC_019729.1|WP_006631296.1|2387151_2387391_+|DUF3134-domain-containing-protein
MYNPSLRQIPRHLPADVIPLKQQSSLLDWLESNNRLLARDVQEPDYLHEEEISELMAVDDSPYDDLEEEVEEDVSVGEE
>NC_019729.1|WP_015175822.1|2385064_2386741_-|glycosyltransferase-family-4-protein
MDTTAAVLYNKEGYHTGGQKLLGRHSAGEGFLKSLVQHGTADSLYCCADSKTTFKEFCSHIQPWLQKPRKVRWIPTERPDLLSQPGTIYRPDPVLSQMVWARRFFDQRAYSVCGVTHTIGTKYIMEAIGDLIAAPMQPWDALICTSAAVKTAVEGVMREWSEYLAQRNGGKPEILVKFPVIPLGVDCSAFPQGVEAVNSRRQLRQELGISPEDIVVLFVGRLTFSAKAHPVPMYIALERAAQQTKAKIHLIQAGWIEDPREEPDFKNSAQIFCPSVNAIFLDGRQPEIRINIWSAADIFISLSDNIQESFGLTPIEAMANGLPAIVSDWNGYKESVRHEIDGFRIPTLIPPPESCLDLALNYLDGSLNWPTYMGHTSLATAVDIDACTLALCQLIENPELRKRMGENARQRAREIYDWKVVIAAYEQLWRELAEIRLTAPESAPLKPGKPPYPLGDDPFRVLGNYATRSLSNEMMLSLGAIATPELLRELQTIWFTSFGQDRRISVNIQMEILDAIEQKGALSVGEVLRRYTKNEQELASLYRTLLYLVKFGILVISC
>NC_019729.1|WP_015175821.1|2384321_2384906_-|PAP/fibrillin-family-protein
MLRKSALLEIIAGKNRGLLATPSDKQAILSAIAQLEDYNPTPRPVEAAELLNGDWRLLYTTSRELLNLDAFPLIKLGQIYQSIRVKESKIYNIGELYGLPYLEGIVSVAARFEPTSERRVQVKFERSIFGLSRLIGYEYPEKFINEIESGKKFAAVDFALDTREQQGWLDITYLDKDLRIGRGNKDSVFVLTKE
>NC_019729.1|WP_015175820.1|2383964_2384204_+|helix-turn-helix-transcriptional-regulator
MDLRALRERAGLTILDVARELECAESSIRNWEKSRTLPKMEVWQVFRMRDLYRCSEAELVLAVRKSMPAEKKEQTKLTE
>NC_019729.1|WP_015175819.1|2383539_2383800_-|hypothetical-protein
MPQNGYQEGCAANPGAIAYQKRLYPWAIAKLMPSMQRAIVGRFRSRSDADGHLLCLRQLMPQATLVVVFDLQPDLEVPIAAPTAIR
>NC_019729.1|WP_015175249.1|2382234_2383377_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKARYQYRIYPTHQQQQSLAQLFGCCRVVWNDALALCKQFEKKPSSAELQKIVITQAKKTEERAWLSEVSNIPLQQSLADLETAFQNFFNSCKGKRKGRKVQYPKLKKRTNRQSARFRMGGFSFKNGGVYLAKIGIVNPVWSRNLPSEPSSVTVIKDCANRYFLSFVVEVQPIQVEAKNPSIGIDLGIKTFAVMSNSEKAESPSYKKLDRKVRKLQRKLARQPKDSKRRNITRIKLATLHNRITDTRKDFLHKLSTKIVNENQVIILEDLNVSGMLKNRKLSRAISQQGWREFRTLCESKSEKFGREFQVISRWEPTSQVCADCGFKWGKIDLSIRSVVCMSCGTEQDRDENAAKIIEKVGMGNRHDSKRAQRVCQASNG
>NC_019729.1|WP_015175818.1|2381428_2382097_-|Uma2-family-endonuclease
MTSTTAKFIVSQVGEIPQWQAATWEDYVAACEDPSLEEARIFFYEGYLWIDMGNEGPQHARFNNLLTLVFYAWFVSKGGQAFDDLGGCVIEKPKVGGGAPDRILYVGGEFIQWQKGEPRRLNLNKSRIPDLVIETSDTTLASDLDEKKRLYAALGIPEYWVVDIKGERVLAFRLQENGKYQECEISGALEGLPIALLSETLKLLNEGNGTAAMWFAQQIGKL
>NC_019729.1|WP_015175826.1|2391093_2392953_+|NAD(P)H-quinone-oxidoreductase-subunit-F
MAQILLQTVWFIPCYPLIGGVLSMLWFPAVTRRTGPRPSGYVNAILTLFAFLHGVIALTAIWNQPAQHQLIPWLNVAGLDLTIPVEISAVTVGATVLVTGLNLLAQIYAFGYMEMDWGWARFFSLMGLFEAGMCGLVLCNSLFFSYMILEVLTLGTYLLVGLWFNQSLVVTGARDAFLTKRVGDLFLLMGVVAILPLAGTWNFDELAVWAQTAKLDPTVATLLTLALIAGPMGKCAQFPLHLWLDEAMEGPLPATILRNTVVVETGAWILIKLQPVIALSPMGMTITIIVGAATAVGASLIAIAQIDIKRTLSYIVSAYMGLVFIAVGTGQAQTALTLIFAYSLAMGLLVMSIGSVVWNSITQDVRSLGGLWGKRPISAIAFIVGSAGLVGLPPFGCFWALEDFTSGLSQTHPFLLGIVLFVNGVTAFGLMRVFGLVFGGKPKQMTERAPEVHWPFILPMTVLMGFTLHVPHLLAVWHLLPGASLNYTATGLLVLSTAIGIGAGAFVYLNEKWEKPVRIGSQALQDFFAYDFYTAKLYRVTVIFAVGLVAQIISWFDRNIVDGFANLIGFVTVFGGQSLKYNVNGQTQFYALTILFGVALLGLLISWPLLVRLSLIVGG
>NC_019729.1|WP_015175827.1|2393057_2393777_+|carbonic-anhydrase
MNSNHRPFNLSRRNSLKFVAGAIGTGILAAGAGADLAAPEPAIAQNDLTPDAALKQLMDGNKRFVESKRQNPHQDFGRLTEVAQTQKPFAAILGCADSRFPSEIIFDQGLGDLFVCRVAGNVVTSEEMGSLEFGTLVLGAKVLVVVGHERCGAVDATIKGAQVPGQIGSLIDAIKPAVESSKNQPGDSLENAVKANVMLQASRLKASPVISKLIQENKLKVVGGYYDLDTGTVTIIPES
>NC_019729.1|WP_015175828.1|2393881_2395396_+|NADH-quinone-oxidoreductase-subunit-M
MLSALLWLPALGAAVVGFLPGNINGMRLRSIASAFASAIFLLNIWLLTQFDTANSGLQFQEYLPWIPQLGLSYNLGIDGLSLPLLVLSALLTLLVIYGTGEKMERPQLYYALILLINAGIAGALMSQNLLLFVLFYEVELIPFYLLIAIWGGKQREYAAMKFLIYTAVSGLLVLAGFLGVAWLSGSLNFDYTAITTQELPLNTQLILLTIVLIGLGIKIPLVPLHTWLPDAYVEASPATAILLGGILAKLGTYGLVRFCLQLFPETWSIVAPGLAIIGTVSVMYGALSAIAQKDIKRMVAYSSIGHMGYILVACAAGTKLALIGAVGQMVSHGLILALLFYLVGIIETKVGTRDLDVLNGLMNPMRGLPTASSLLVLGGMASAGIPGLVGFIAEFLVFQGSFSIFPIPTLVCILASGLTAVYFVILLNRTCFGKLDNATAYYPPVTFAENMPALVLAGVIFVLGIQPAWLLKWSESTTNAIVATLPADRNTQVAKIAILGKLGS
>NC_019729.1|WP_015175829.1|2395590_2395977_+|hypothetical-protein
MKPKKLFSVSAVTTLLLVVATSAFAQAITRIRDLPALKTGITISGRVVGFGESDENEWILNDGSGQVRVDAGPRRWRNINLSEGETITVVGEMDDGEFDAFSITLSNGSIINIRSPQGPPPWAGKEGK
>NC_019729.1|WP_015175830.1|2396079_2397402_+|CO2-hydration-protein
MVQTPTRSATKLPPSKHEFAEVIHRLEAGGAMIPDTPENLMQIIAIWKAYAVPMDFYWRDLLYIAERVFLHPLPFFKYFLPQEYLDLQNHYAGDGADLRIWRGTGSVHPELLEFMEKGETGKLPRFLHHLWHDRINMEFAEECMRSMLWHRGLYVPTNQFDPYLDSDEYKANADRAIKAYFKKDPFMLALHKAFPEMFLEQCRQMSYYSNLGLFWEVMAPVFFEVSDLYDEGKVTTVPQAMDFIVNGIFAIAGRPIYHHVYIDGEKYEIIPKSKGFTWLYEAALPYVEAVFYRTSPFRGTKSYNAQAKEVPEDQKDFHYGVLYADKFPVGTAGIPPTLLAQDMLHFLPPYLMDFYKQRCRGEDDILNQIGVTFQRSMYCVTSAVIQALRTALLYPLDDPNPKHLKANRAFFEAQLDRFCRPEYGMKYAAKLKNIQTSDYR
>NC_019729.1|WP_015175831.1|2397658_2397865_+|hypothetical-protein
MDSKDLAKYIEAKDGISKPWLLVQLRLKKLQERRSDISAEEYMTELTDIHKDLMNLGEWWLGIEDEVF
>NC_019729.1|WP_015175832.1|2397906_2398377_-|hypothetical-protein
MIASSQLKSSTLTCSKILHKSPILHPLARFVNEETVALLFNISADEIYRIECCRYMVYVHAKGISRFVSYADFPPILQVKPIALQDFGRWYKRWKSKLAPAFWTKFYTYKFKKAVSVDSLLEWGQLVATVKSVISGAALQQLRDVYALEKDLMEKF
>NC_019729.1|WP_015175833.1|2398508_2398727_+|helix-turn-helix-transcriptional-regulator
MSKGLVRLRIREFADQNGWTLKEVSDRSGVGYSTIRNYAQCQGMTTVNFTYLHRLARIFDIMIEDLVEILEE
>NC_019729.1|WP_015175834.1|2399082_2400294_+|transposase
MLVFELKASGKKQQFDAVDEAIRTVQFIRNKALRFWMENEKVDKYALNKYSAVLAKEFPFCDELNSMARQSSSERAWSAISRFYDNCKKKVPGKKGFPQFQKHNRSVEYKTTGWRLADDRKSITFTDKQGIGKLKLKGTRDLHFSQRSQIKRVRLVRRADGYYVQFCIQVDRSEKIEITGNTIGLDVGLKEFYTDSNGVAVDNPRFLRKGERRLKKSQKRVSKRVKGSQNRKKARAILGKRHLKISRQRKDFAVKLARCVIQSNDCVVYEDLRIKNMVKNHCLAKSINDASWYMFRIWLEYFGKVFGRITIAVPANGTSQECSSCGTIVKKSLSTRTHACRCGCVLDRDWNAAKNILSRGLSTAGHVGTWILDPNACGELTATDVEVILHRQVDSANQESPRL
>NC_019729.1|WP_015175835.1|2400647_2400860_+|helix-turn-helix-transcriptional-regulator
MGLVRIKVRELAAEKGWTFKEVSERSGVMYNTVKHYARCPGLTTVDFTLLLKLARTFDVMIEDLVEVLEE

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Crispr_ID: NC_019729_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_25

2496251-2496370

Orphan

Consensus_repeat	Method
GACTTGTAGGGTGCGTCAGGCGAAGTTCTCTAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_25

>merge|NC_019729|25|2496251-2496370|CRISPRCasFinder
GACTTGTAGGGTGCGTCAGGCGAAGTTCTCTAACGGCGATCGGGAATTTCAGGATCTGACGCACCTTACTATATAATCTAAAATTGACTTGTAGGGTGGGTCAGGCGAAGTTCTCTAACG

>NC_019729|25|24|2496251-2496370|CRISPRCasFinder
GACTTGTAGGGTGCGTCAGGCGAAGTTCTCTAACG	GCGATCGGGAATTTCAGGATCTGACGCACCTTACTATATAATCTAAAATT
GACTTGTAGGGTGGGTCAGGCGAAGTTCTCTAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015175899.1\|2492712_2493342_+\|K(+)-transporting-ATPase-subunit-C	unknown	unknown	gnl\|CDD\|184447
NC_019729.1\|WP_015175897.1\|2490150_2492244_+\|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl\|CDD\|234905
NC_019729.1\|WP_190274363.1\|2505239_2505599_+\|DUF4087-domain-containing-protein	unknown	unknown	gnl\|CDD\|372559
NC_019729.1\|WP_015175910.1\|2504593_2505223_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175898.1\|2492401_2492671_+\|K(+)-transporting-ATPase-subunit-F	unknown	unknown	gnl\|CDD\|378219
NC_019729.1\|WP_015175908.1\|2502729_2503581_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238872
NC_019729.1\|WP_015175896.1\|2488238_2490035_+\|potassium-transporting-ATPase-subunit-A	unknown	unknown	gnl\|CDD\|377138
NC_019729.1\|WP_015175894.1\|2486148_2486841_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019729.1\|WP_015175900.1\|2493516_2494668_+\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NC_019729.1\|WP_015175902.1\|2496435_2496909_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175893.1\|2481264_2485947_-\|tandem-95-repeat-protein	unknown	unknown	gnl\|CDD\|372982
NC_019729.1\|WP_015175903.1\|2497037_2497673_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_019729.1\|WP_015175906.1\|2499969_2501466_+\|carotenoid-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|226196
NC_019729.1\|WP_015175905.1\|2498383_2499838_+\|folate/biopterin-family-MFS-transporter	unknown	unknown	gnl\|CDD\|341037
NC_019729.1\|WP_015175895.1\|2486837_2487938_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015175907.1\|2501699_2502599_+\|DUF4436-family-protein	unknown	unknown	gnl\|CDD\|379624
NC_019729.1\|WP_015175892.1\|2476442_2480822_-\|Na-Ca-exchanger/integrin-beta4	unknown	unknown	gnl\|CDD\|223021
NC_019729.1\|WP_051041505.1\|2503796_2504441_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015175901.1\|2494957_2496196_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_019729.1\|WP_015175904.1\|2497679_2498141_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|226357

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015175899.1\|2492712_2493342_+\|K(+)-transporting-ATPase-subunit-C	gnl\|CDD\|184447	PRK14003, PRK14003, K(+)-transporting ATPase subunit C.	1.85124e-97
NC_019729.1\|WP_015175897.1\|2490150_2492244_+\|potassium-transporting-ATPase-subunit-KdpB	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NC_019729.1\|WP_190274363.1\|2505239_2505599_+\|DUF4087-domain-containing-protein	gnl\|CDD\|372559	pfam13316, DUF4087, Protein of unknown function (DUF4087). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 140 and 280 amino acids in length. There is a conserved RCGW sequence motif.	5.72082e-57
NC_019729.1\|WP_015175898.1\|2492401_2492671_+\|K(+)-transporting-ATPase-subunit-F	gnl\|CDD\|378219	pfam09604, Potass_KdpF, F subunit of K+-transporting ATPase (Potass_KdpF). This entry describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (IPR004623). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.	7.30456e-05
NC_019729.1\|WP_015175908.1\|2502729_2503581_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238872	cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.86422e-49
NC_019729.1\|WP_015175896.1\|2488238_2490035_+\|potassium-transporting-ATPase-subunit-A	gnl\|CDD\|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NC_019729.1\|WP_015175894.1\|2486148_2486841_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.67858e-73
NC_019729.1\|WP_015175903.1\|2497037_2497673_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.72246e-23
NC_019729.1\|WP_015175893.1\|2481264_2485947_-\|tandem-95-repeat-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	2.80581e-72
NC_019729.1\|WP_015175900.1\|2493516_2494668_+\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	6.11027e-180
NC_019729.1\|WP_015175906.1\|2499969_2501466_+\|carotenoid-oxygenase-family-protein	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_019729.1\|WP_015175905.1\|2498383_2499838_+\|folate/biopterin-family-MFS-transporter	gnl\|CDD\|341037	cd17484, MFS_FBT, Folate-biopterin transporter of the Major Facilitator Superfamily of transporters. The Folate-biopterin transporter (FBT) family includes folate carriers related to those of trypanosomatids in higher plant plastids and cyanobacteria. FBT mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The FBT family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.34201e-172
NC_019729.1\|WP_015175895.1\|2486837_2487938_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.09647e-43
NC_019729.1\|WP_015175907.1\|2501699_2502599_+\|DUF4436-family-protein	gnl\|CDD\|379624	pfam14494, DUF4436, Domain of unknown function (DUF4436). This is a family of membrane and transmembrane proteins from mycobacterial and related species. The function is not known.	2.74702e-32
NC_019729.1\|WP_015175892.1\|2476442_2480822_-\|Na-Ca-exchanger/integrin-beta4	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	3.30603e-32
NC_019729.1\|WP_015175901.1\|2494957_2496196_+\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.9726e-64
NC_019729.1\|WP_015175904.1\|2497679_2498141_-\|cupin-domain-containing-protein	gnl\|CDD\|226357	COG3837, COG3837, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown].	1.25115e-56

>NC_019729.1|WP_015175901.1|2494957_2496196_+|sodium:proton-antiporter
MVDNYILNLLVIGILLLTVTLGSGWISGLPVSYALIYLIVGIGLGPYGVKLIDLRPEAQFLERLTEFVVIVSLFSCGLKMNRPLQLWAWNSTARLIGFLMPISIFAVAAVGHWFVKLDWGPAILLGAILAPTDPVLASEVQLAHIDDRDELRFGLTSEGGLNDALAFPFVYFGIYALKDRNWPNWFSQWLAVDLIWAIAAGIVMGILVVKAVTWIDRQLQRYRPADRLMEDFIALSTILLTYSLTEVVNGYGFLAVFVAGIVVQRSYRNPEKPLSQLHFTERIEKLMEVATILLLGSLLRLEPMLAYGGYSLLVAGLLIFLIRPVGAWISTIGSPLHPANRWLCGWFGIRGVGSIYYLTYAFGKGLEGETAEKIAWITFTTIIISVILHGITSTPLMNWYERRIKPKVPDLI
>NC_019729.1|WP_015175900.1|2493516_2494668_+|sensor-histidine-kinase-KdpD
MIHSSELTNNPDAVYAQPNRTYDRTPRRGKHKIFIGMAPGVGKTFRMLEEGHRLKSEGIDVVIGLLETHGRKETAAKAEGLEIVPKKQMRRGEKMLAEMDTDAVIERRPQLALIDELAHTNIPGSLREKRYQDVEEILNAGIDVFSTLNIQHIESLNDLVARITGVVVRERVPDPVLEDADEIVVVDVTPETLEERLLEGKIYAPEKIEQSLENFFQRRHLIALRELALREVADNVEDDAATLKGQSCNIHERVLVCISTYPNSLQLLRRGARIASYMNAPFYAVFVNDPDRFLTKAESLHVETCEKLCQEFKGQFLRVNGTNIAKVISEVAKQYRITQIVIGESQQSRWHLLLRGSLTQQLVRSLKHVDLHIIATEKSGLSN
>NC_019729.1|WP_015175899.1|2492712_2493342_+|K(+)-transporting-ATPase-subunit-C
MREIIRTLRLTLVLWGITAIIYPLILLVIGQIAFNSQANGSLITKQGVVVGSSLIGQPFRSDKYFWSRPSTTNYSSFATADYDPTKGDNSSQRTGVSGASNLAPSNSDLLKRGNEKEGFQGVQVELDRLNKAGIKPTADLVYTSGSSLDPHISIEAARSQIQRIATVRSLNLNQVEMLVAKNTEGRFLGIFGEPGVNVLQLNLALDRLQ
>NC_019729.1|WP_015175898.1|2492401_2492671_+|K(+)-transporting-ATPase-subunit-F
MKRNDLLKDIFPTDFQEIIELAQMLWQRHPIPVHLFLVMCFNAIIAPAVYAVGGEDLTRKAVWGLSLLGLVIIALSIYLFVVIFHPERF
>NC_019729.1|WP_015175897.1|2490150_2492244_+|potassium-transporting-ATPase-subunit-KdpB
MASSNTPDSPKRPARGSRESRKHTPKANTKGLYQRAFKQAFVKLNPQVMLKNPVMFVVWVGTIVTALLTIDPTLFGPVPGENQRVFNGLVTFILFFTLVFANFAEAIAEGRGKAQADALRSTKADTTARKLLPDGSIQEVSSTSLRRGDQIKVIAGDVIPADGEVIAGVASVDESAITGESAPVLKEPGSDIASSVTGGTRILSDELTLRVMADPGKGFLDRMIALVEGAERSKTPNEIALTVLLAVLTLVFLIVVSTIPPVGNYVKTPVGVVTLISLLVALIPTTIGGLLSAIGIAGMDRVAQFNVIATSGRAVEACGDVNTLILDKTGTITLGNRLAEEFIPVNGHSLQEVAQVALDASVFDDTPEGKSIVRLAHNLGAQVDFDRTNAAGLDFSAKTRMSGTDLPDGTEVRKGAVDAVKGFVRSRGGNFGPDLDAAYERVSRLGGTPLAVCQGSDTYGIIYLKDVIKPGIRDRFDQLRKMGIRTIMLTGDNRITASVIADEAGVDDFIAEATPEDKIDVIRKQQAEGKLVAMTGDGTNDAPALAQANVGLAMNSGTQAAKEAANMVDLDSDPTKLIDLVTIGKQLLITRGALTTFSLANDIAKYFAIIPAMFAPVGALNVMGLASGQSAVLSALVYNALIIPALIPLALTGVKFRPLTANQLLQRNILIYGLGGAVAPFIAIKVIDILIAAVGLA
>NC_019729.1|WP_015175896.1|2488238_2490035_+|potassium-transporting-ATPase-subunit-A
MLEGLIQIALTLIIVVAIAPIFGNYMARVYMGEPTILDPAIKPVEQLIYKASNIRSVDSMTGWQYTRSLLYSNAAMGIFVYLIFMLQGVLPLNATSLSAPTWDTALHTTISFLTNTDQQHYSGETTFTYLSQLTLGFLMFTSAATGLAVGIAFIRGLTGRPLGNFYIDLIQSITRILLPISLIIALLLLMSGVPETLAGPAVARTLEGDTQIIARGPVAHFESIKQLGENGGGFFAINSAHPFENPNPFTNLLETLGMVSIPAAMIHTYGRFANNKKQGWLIFWMVFGIYVILIGIAAFGEYGGNPQINNLLGSQQPNLEGKEVRFGWAETALWAVTTTGTMCGAVNGMHDSLMPPGGFATLFNLFLQIVWGGQGTGTAYLFIYSILSVFLTGLMVGRTPEFLGRKIEKREIVLASVVLLIHPIAVLIPGAISLAFTDSLSGISNQGFHGISQVMYEYASAAANNGSGFEGLADSQPAPTGLWWNLSTCFSLLLGRYVPIIALLLLADSMTKKQLVPETTGTLRTDSVLFTSVTAGVIIILGALTFFPVLALGPIAEGYEISSGKFEPTPITAPPLATPSPLATPSPEATTPTPNSGQ
>NC_019729.1|WP_015175895.1|2486837_2487938_-|HAMP-domain-containing-histidine-kinase
MLNSLLKITDNQAIQEKYLRGRWSIAILFAIVVVLEFTTPSEYLFGYLYTGPILLANSRLSRLGKLQITLVSAALTLLNLFVPHGEAIALATVANRSIAVMALGVTGYLSDRNQQYQETIAIAKAELQSQQQLASIREDFVSTLSHDLKTPMLGAIETIKAFQEAKFGNVTASQQKVLETMARSHKMSLQLVETLLDVYRNDAEGLKLQLAPVNLVALAEEVIATLIHLSAARRVYISMSYGESDFRRSLWVNGDAVQLQRVFVNLLTNGINHSPRGGKVEIVMESYSSYQVVKVIDSGLGITADELPHLFERFYQGNGDRQAKGSGLGLYLSRQIIDAHGGIIWAENKLPHGALFGFRLPAIPQT
>NC_019729.1|WP_015175894.1|2486148_2486841_-|response-regulator-transcription-factor
MKPAYPLRILLVEDDELFRLGLKTRLQQESCLQVIAEAEDGETAVEMTQEHLPDVVVLDVGLPGIGGIEACRQIKQRHPAIPVLILTSHSQKSLIERLIAAGAQGYCLKGIAAETLVWAIRSVAAGASWWDQVATAEIRAVFANPEPVKVGSKSEVLENPLTKREQEILALVAAGKSNQEIAQILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKGLVAEEFLAIEP
>NC_019729.1|WP_015175893.1|2481264_2485947_-|tandem-95-repeat-protein
MQNFINSVVSSIAFLDSALSDCQTLRNGIAAGTEVIILDAARDGLAQITAALASRSNIKSIHIISHGRPASLQLGAIDLNLTTLKTYARQLQRWSRSLAESGEILLYGCEVAAGEKGASFVQQLSQLTKAKIAASRSPIGSAALGGNWELDYTTGAVSSEVAIDPATRAAYQFAFGRTLYDGTNYSPLPPTSATTPGIGTAAGTQLAYGQVPLPFPAGSGSLPAGAFSPNTGINTASVTAANNTTGYAGYTNYKYTPTPAPGTFTPVNATFPALSLTDGYSVSFRVAVTAENSSSDDRAGFSIIAISSDAPKGIELGFTNRNLGPNGGIFAQLDNPLFTRGESANFNISNATDYKLVVQGTSYSLFAGGTALLTNQSLRNYGAFNPATSQPALPFNPYTQPNFLFFGDATDQASATFTLGNISVNNFPVGVNDTYSVLHDKVLSVSGAGVLSNDTDANSGDARSAVVVTTASNGTVKLNLTGDFTYTPKAGFVGTDTFTYNVSDGTDSSVQPATVTINVTNNNPPFAVIDNYKTLHGQVLNVAVGEGVLANDIDLDGDLRTATLVTNPNNGTLGLNKDGSFTYTPNPGFFGPDSFTYTVSDGAATSPAILANINVTNNPPFAVIDNYKTLHGQVLNVAVGEGVLANDIDSDGDLRTATLVTNPNNGTLGLNKDGSFTYTPNPGFVGLDNFTYTVSDGAATSPAISANINVTNNPPIAQPDTYSISAGKVLSLTAPGVLINDTDADLDTLTAAVAANPTKGSIALNKDGSFTYTPNAGFSGTDTFTYTVSDGIVNSAPATVTVNVNNNPPVANPDTYTTAFNTGLNVAGLGVLINDTDPENDPLTAILVTNPATGSIALNANGSFTYTPNTGFSGTDSFTYKANDGKADSAIVTASILVNTPPTPTPTETPTPTPTDTPTPTPTDTPTPTPTDTPTPTPTDTPTPTPTDTPTPTPTDTPTPTPTDTPTPTPTDTPTPTPTGTPTPTATPTPTPTGTPTPTPTGTPTPTPTDTPTPTPTDTPTPTPTGTPTPTPTGTPTPTPTDTPTPTPTGTPTPTPTPTPTPTDTPTPTPTDTPTPTPTGTPTPTPTDTPTPTGTPTPTPTDTPTPTETPTPTETPTPTPTETPTPTPTGTPTPTPTGTPTPTETPTPTGIPTPTGTPTPTGIPTPTGTPTPTGIPTPTGTPTPTGTPTPAGTPTPTGTPDDRDCICEQITLPAIGSIPGPNSVDRTFNGTDGDDFLTGSNLNDAISGFNGDDILLGEKGNDNIYGGLPSNIPLGPNADRDLLFGSGGNDYLNGDAGDDLIFAGKGDDVAIGGKDDDLIWGDKGNDTLVGAEGNDCLFGGGSFDPFSPDSNGRDLLFGGAGNDFLNGGDAADTLSGGEGNDTVYGGKGNDVVVGGTGNDRLLGDRGSDSICGDDGNDTILGDSAIDFNGDPDSLCGGAGNDLMFGNGGSDKLCGEEGNDTLYGGKGDDCLIGGLGNDILSGGIGRDRFVLTAGEGSDLITDFTKGEDLLVLAGGLTFAQLSITQNANAAFIRIGENGQLLAALNGVQASAIGLNDFTIFG
>NC_019729.1|WP_015175892.1|2476442_2480822_-|Na-Ca-exchanger/integrin-beta4
MGQIIINEFRRNGQFQGNEYVELLLTEDLTTAQLQSFFVGDSSGATAQKFSAYQFRNMASIAPVFKAGTIIAIGGSGVIPSNDITYNPVAGGNDADWNIQLLINNGAGGTYLNNVLVGTNGFGGDFAASDIVWVDTSSAGITSVDSLAWPTTGLGVFGSAAKVQIPAPNNGGNVEFSSASGGINRTASYTIDSPGSLGLPNGGINTIYINSLRNPQVNIAPTLATPNVNPPIAINEDIPSAANTGFSIFNITSELGSDANGDPLGVAVTAADNTNGNWQFSTDGNTWKDFGVVSESSATVLGPTPLYNGLLGNTPSSQNWLSLTNSNLASPTATASEIFSGNGVNLNSTAANSIYAGYTKNSLNPSFPPLDRTTGFSLSFNLQIISESRTNQNQAGFSIVAVTSDRKAIEIGFQQLSATSGNIFAQGDGITPNPGGHTNGLFLAAENVAHNTNIATNYTLRVQGNNYFLSDGSDIILTGPLRDYSGFIDQIDPYETPNFIFLGDGATSAQANINLTRVSLQTPAKVRFVPNPDYYSTPGSEPTITFRAWDGSNGVGNGTAGVNASVTGGTTPFSTNSLTSSIAVNPVNDAPSFVKGVDRTLSSNSGPQTIPGWATAISPGPANESGQTVAFQVVGNDNAALFSVPPAIDSVGTLTFTPLPGAIGSANITLNLRDNGGIDNDGIDTSDTQSFILNLTNPGKFNFRNANYSVNENGQFATITVTRTDANVAAAVSYSTSNGTANAGSDYNQTSGTLNFDIGESVQTFTVPIVDDSEIEQDETVNLTLNNPTNGEDLGAISSAVLTIVDTTPPPTPTPAETPIPTPTPTPTPAETPIPTPTPTPTPAETPIPTPTPTPTPAETPTPTPTPIPTPTPAETPTPTPTPIPTPTPAETPTPTPTPIPTPTPAETPTPIPTPTPTPAETPIPTPTPAETPTPTPAETPIPTPTPIPTPTPTPAETPIPTPTPTPIPTPTTISTPTPAETPIPTPIPAETPLPTPTPIPAETPLPTPTPIPAETPLPTPTPIPAENPTPGETPTPIPTPIPTSAETPIPTAKPGETPIANQNSIAPTTSPTSETPTPALIPAASEDCMCDRITLPDRTSIPGPNIPENTLNGTDGKDTLTGSDINDIINGFNGSDLLNGFLGNDNIYGGLASPVTVGADADSDTIFGNENNDYLVGHAGNDIIYAGKNRDVAIAGKDNDVVWGDKDNDSLLGDESNDSLFGGTSDASDGDLTGKDLLFGNNGNDVLYGQESEDTLSGGQDNDTLHGGKDNDIICGDSGNDLLFGDLGNDSICGGEGEDTIFGDIVNIATDASSQQDYLCGGSGNDLIYGNQDADRVCGGDGSDTVYGGKGDDALMGGIGGDWLMGDFGNDTLQGGSGRDYFFLTAGEGRDVVADFTQGEDLLILTGGLTVDRLSIVEENTTTFIKIANTDQILATFNGVPANLLTQQDFTVIGLPGL
>NC_019729.1|WP_015175902.1|2496435_2496909_+|hypothetical-protein
MDRFEFQLAMLQKGAEELEKKIANFTTIMMQLKTTAITIWVALIGWVFTSKIDALVPLGYVIIFGFWFLEATYWRVQLYYMLRAHAVTEFLNKESALDKSFSTRSIPEGLVHPLGSLKTLKMPSLGRAICAPSIYIFYSFLFVVNSIVWLITLKTPL
>NC_019729.1|WP_015175903.1|2497037_2497673_-|class-I-SAM-dependent-methyltransferase
MSQVNLWTSAEHALWYLAKADGIPHRTEGEAVLLEEVPKNVKRILDVGTGDGRLLGLLKCDRPNVECVAIDFSPTMLEKARIRFADDQNVTVIEHNFDESLPDLGKFDAVVSSFAIHHVADDRKRSLYTEIFELLEPGGIFGNLEHVASPTPALHERFREAIGISNDPDDPSNKLLDVETQLRWFREIGFTDADCYWKWRELALLVGVKPV
>NC_019729.1|WP_015175904.1|2497679_2498141_-|cupin-domain-containing-protein
MIIDPKNVPEITGSKYPQQFQSAVAGRVKKRLGDAAGLQNFGVNLVRLAPGSCSALRHWHTRQDELIYVLEGEVTLIANSGEQVLKPGMAAGFPAGDADGHHLVNRTNADVVYLEIGDRTPGDSAEYPDDDLIAKANGNSWIFTRKNGEVYES
>NC_019729.1|WP_015175905.1|2498383_2499838_+|folate/biopterin-family-MFS-transporter
MLVSSSGVSKLKESLKEKVFFGNEPTPELIAILLIYFVQGILGLARLAVSFFLKDELGMSPAEVSAMLGVVALPWIIKPVFGFMSDGLPIFGYRRRPYIVISGLLGTLAWVSLATIVHTPLAATGAIALSSLSLAVSDVIADSLVVERARKESVTDAGSLQSLSWGASALGGLITAYLSGSLLQHLSTHTIFLITASFPLIVSATAWLIAEEKTNKRTDFETVKDQLKQLRQAVTQKTIWLPTAFLFLLQATPSSDSAFFFFTTNELGFPPEFLGRVRLVTSIAALAGIWLFQRFLKTVPFRVIFGWSTVIATALGMTTLLLVTHANRALGIDDRWFSIGDSLILTVIGQIAYMPVLVLSARLCPPGVEATLFALLMSITNLAGLLSHESGALLTHLLGITDRNFDNLWLLVIITNLSTLLPLLFLNWLPADSTESRDPNSQKSLPVLEPEPGSSKPGGQHFMPEYFPDLVPTVRSQRRTADSK
>NC_019729.1|WP_015175906.1|2499969_2501466_+|carotenoid-oxygenase-family-protein
MPNLQISQPQTAAQKSSYDRTDWQRGYESQPNESDYWIDDIEGEIPAGLQGTFFRNGPGLLDINGQRIHHPFDGDGMVCAIAISEGRAHFRNRFVRTEGYLAEQEAGKILHRGVFGTQKPGGWLANIFDVKIKNIANTNIIYWGEKLLALWEAAQPYRLDPRTLETLGLDTLDGILEPGEAFAAHPRIEKGKNGKGDRLVNFSVKPGLSSTITIYELDESGKLLQRHAHAIPGFAFLHDMVITPNYCIFFQNPVSFNPLLFFLGLRSAAQCIQFSPNKPTQAILIPRNGTDEVKILETEPCFVFHHCNAWEEEGEVFVDSVCYESFPTVDADADFRELDFESVPAGELWRFKLNLQEETVQHQVVETRCCEFPTLHPNNVGQPYRYLYIGAADAPTGNAPLQAILKMDFVTGERQIWSAAPRGFAGEPVFVPRPDAVAEDDGWLLLLMYDAANHRSTLVILDARDITKGPVARLHLKQHIPYGLHGSFTPNVLLPIGS
>NC_019729.1|WP_015175907.1|2501699_2502599_+|DUF4436-family-protein
MQTVNKFPLKKLLILISSILIFFAIILSIYSHNANAQEPYNLSPEAAVASKGLVEVEMTLIAVDPIKNELEARLQFELKGIYKKGPTYPAQDLLMTVNGANVQDSEITFKEGKPMIVPALKFNLVKGKINNYPFDRHIAKVAISIDPLPSIGKKFAPFELNPVPLEFKFNADVPGFDISYKPMEENSSIFIYIDVSASRSLPVKFFALVIIVIMWVLSIMALLLALKVMKSGKVPEVGMLSWTAVMLFAFPAIRNAQPGVPPVGTASDFLSFFWTEIIVVVALVIIGSCWLKRYHPPIE
>NC_019729.1|WP_015175908.1|2502729_2503581_-|SGNH/GDSL-hydrolase-family-protein
MSPNAPSPRPKLPKRQVFIRLALAVITAIIAFNIPHSLIPVFKESVSQATPPPEIQNVLAGQRKIVTVGDSITEAGKYPGGYVWLLQRYLNALYPGKIEIVNAGISGNKATDMQARFQKDAIDQKPDLVMINVGVNDVWHAFFDFQNIQFYPQGNLPTGVPLAEYREKITQMVLAAKAAGIRVVLLSPTPIGEILDGPENRRLQEYIAAMREIALQNQCLFIDLNAPFREVIATYQKHAGKTLNLLAADGVHPNPSGYRIMAFTILRGLGVPTKDIENLEVKK
>NC_019729.1|WP_051041505.1|2503796_2504441_-|hypothetical-protein
MLSKTYAIAKKAERHNLAKLMTCAIILLPANLAFSAPTYLGSEPSAEADSTKFTQKVNIIQAQNSTQVPLSIQYGGTEARGGFVLMQLTAPNRDTTQPAYGGKLRFYDVHLAKMFETSHFLCQQFRGVSGYEWVYLAGNGSIRMGNFRIPCSLASETASTYGLGKPERTSIAKDTEGGPPESDVYSIPILDITGSNVQRWMNFVQNFKPTSRDM
>NC_019729.1|WP_015175910.1|2504593_2505223_+|hypothetical-protein
MRTRRLVALMVSLIILGSCLPIIAQQSKRYPTENELQQLMNRFRNFVASPSPGNRDFYIRDRRNETETQKLQAFVRAWLPVNPDVAPFLGQWTALEETQNIYPSTLKGKVCIIETFIPTENDRGISFVQGTISGKSIKTTNFASLIQQGNYLGVAFINTSNNQPGIYEYAWPKPLVDPAKLMSSLPPADRNRLLQQFKEAGCSDTLPKR
>NC_019729.1|WP_190274363.1|2505239_2505599_+|DUF4087-domain-containing-protein
MKRSLLVLAIISFISVIALPVKATETRCGWLQNPTPANWYLRDRDGTWVISRQGGYQAEGMDNIPSDEKEYVRTNGYYGYGCACLEVATDTNRMRIITIQGGEALPLSTCREDPNLPKE

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Crispr_ID: NC_019729_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_26

2853086-2853177

Orphan

Consensus_repeat	Method
CACCCTACCACTGTGGAGTCAATCTAAAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_26

>merge|NC_019729|26|2853086-2853177|CRISPRCasFinder
CACCCTACCACTGTGGAGTCAATCTAAAATCTCAAATCTAAAATCTCAAATCGACTGACCCACCCTACCACTGCGGAGTCAATCTAAAATCT

>NC_019729|26|25|2853086-2853177|CRISPRCasFinder
CACCCTACCACTGTGGAGTCAATCTAAAATCT	CAAATCTAAAATCTCAAATCGACTGACC
CACCCTACCACTGCGGAGTCAATCTAAAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176168.1\|2849913_2851881_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NC_019729.1\|WP_041623060.1\|2859570_2860935_-\|response-regulator	unknown	unknown	gnl\|CDD\|226654
NC_019729.1\|WP_041622498.1\|2862910_2865829_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236901
NC_019729.1\|WP_015176171.1\|2857940_2859308_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_019729.1\|WP_015176165.1\|2845998_2847729_+\|NAD(P)H-quinone-oxidoreductase-subunit-4	unknown	unknown	gnl\|CDD\|237137
NC_019729.1\|WP_015176161.1\|2841713_2842520_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|131023
NC_019729.1\|WP_015176178.1\|2869479_2870652_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_019729.1\|WP_015176164.1\|2844899_2845700_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|366293
NC_019729.1\|WP_015176175.1\|2862524_2862893_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NC_019729.1\|WP_015176174.1\|2861132_2862455_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015176162.1\|2842845_2843649_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|179052
NC_019729.1\|WP_015176158.1\|2838113_2840729_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238504
NC_019729.1\|WP_015176179.1\|2870718_2871654_+\|exopolyphosphatase-related-protein	unknown	unknown	gnl\|CDD\|223691
NC_019729.1\|WP_015176169.1\|2852092_2852950_-\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208
NC_019729.1\|WP_015176180.1\|2871777_2872011_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176160.1\|2841125_2841497_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|184441
NC_019729.1\|WP_015176163.1\|2843867_2844797_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NC_019729.1\|WP_015176177.1\|2868112_2868262_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176170.1\|2853211_2857492_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|225983
NC_019729.1\|WP_015176166.1\|2847796_2849461_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|368582

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176168.1\|2849913_2851881_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NC_019729.1\|WP_041623060.1\|2859570_2860935_-\|response-regulator	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	9.13395e-47
NC_019729.1\|WP_041622498.1\|2862910_2865829_-\|amino-acid-permease	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	6.32416e-48
NC_019729.1\|WP_015176171.1\|2857940_2859308_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	2.49299e-129
NC_019729.1\|WP_015176165.1\|2845998_2847729_+\|NAD(P)H-quinone-oxidoreductase-subunit-4	gnl\|CDD\|237137	PRK12561, PRK12561, NAD(P)H-quinone oxidoreductase subunit 4; Provisional.	0
NC_019729.1\|WP_015176161.1\|2841713_2842520_-\|septum-site-determining-protein-MinD	gnl\|CDD\|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	4.20718e-139
NC_019729.1\|WP_015176178.1\|2869479_2870652_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_019729.1\|WP_015176164.1\|2844899_2845700_+\|Uma2-family-endonuclease	gnl\|CDD\|366293	pfam00769, ERM, Ezrin/radixin/moesin family. This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.	0.000172825
NC_019729.1\|WP_015176175.1\|2862524_2862893_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	7.19624e-27
NC_019729.1\|WP_015176174.1\|2861132_2862455_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.9602e-40
NC_019729.1\|WP_015176162.1\|2842845_2843649_-\|septum-site-determining-protein-MinC	gnl\|CDD\|179052	PRK00513, minC, septum formation inhibitor; Reviewed.	1.87572e-92
NC_019729.1\|WP_015176158.1\|2838113_2840729_+\|chloride-channel-protein	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	1.5552e-148
NC_019729.1\|WP_015176179.1\|2870718_2871654_+\|exopolyphosphatase-related-protein	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.09526e-24
NC_019729.1\|WP_015176169.1\|2852092_2852950_-\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	7.73637e-45
NC_019729.1\|WP_015176160.1\|2841125_2841497_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|184441	PRK13988, PRK13988, cell division topological specificity factor MinE; Provisional.	5.05495e-38
NC_019729.1\|WP_015176163.1\|2843867_2844797_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	8.38207e-79
NC_019729.1\|WP_015176170.1\|2853211_2857492_-\|PAS-domain-S-box-protein	gnl\|CDD\|225983	COG3452, COG3452, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	2.82185e-50
NC_019729.1\|WP_015176166.1\|2847796_2849461_-\|NACHT-domain-containing-protein	gnl\|CDD\|368582	pfam05729, NACHT, NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.	3.77741e-07

>NC_019729.1|WP_015176169.1|2852092_2852950_-|DUF1361-domain-containing-protein
MMGLILEALQAMGHNVRWMSWNLFLALVPLGLSFWLFRKPRSRWLLWGTGILLGATFLPSTRHFLGYLKHIVQDVGKTYVLGAIAITLALMALDIWVLRQRGVRSLRWWGGFFWLIAFLPNAPYVLTDIIHLIEQIKEGNSVWTVTLALIPQYLAFMLVGFGAYVLSVMNLGYYLKQQGLSKFILATEITIHALSALGIYLGRFIRFNSWDILTNPDALVNTVMNDLIGKRPVLVMAVTFVVIAVLYWVMKQVILGISQRFYSSKLQSELSGESATSSDAIDLRF
>NC_019729.1|WP_015176168.1|2849913_2851881_-|ABC-transporter-ATP-binding-protein/permease
MNRFDRQLWERFIAIAQPYFYPLEPGGGRIFLGLVALLLIFLFAAMFVFVSAVCLGAQVFFPEAFNAVAAGLATLIKGIIYSPTIAIVGLMLILPMAAFVFFRSKLIPRCKQWIMLALLLFLSLSVSGINVVISYIGNFFTTALAEKDQTTFWRFMWVYAGVFIIGTPIVVIYRYTQDKLGLYWREWMTDSFLDRYFENRAHYEINSQKEIDNPDQRIAEDIKSFTSTSLDFLLLILGAIIDVISFTGILWSISKGLSIGLIFYAVFGTAVMVIIGKKLIVLNFNQLRKEADFRYGLVHIRDNSESIAFYRGEAQESVQVKNRFLAAVRNFNLLIGWQRNLQYFTLSYKYATYIIPSLFLASIYFGGQIKYGDITQAEFAFRQVLEAFSLVVYNIESLSAFAAGINRLATFNESLINEKNAVQIDEFRTIDTVINSQLTLEHVTLDTPKYQNTLIRDLSVAVSPGEGLLIVGQSGTGKSSLLRAIAGLWESGTGRLARPKLEEMLFLPQRPYMILGSLRSQLLYPNTSSEVDEEKLRRVLASVNLADLPDRLGGFDADLDWAEILSLGEQQRLAFARLLLTEPKYAILDEATSALDLKNEQHLYEQLQATKTTFVSVGHRLSLVKYHQQVLELLGDGSWRLLSAREYRASATIFG
>NC_019729.1|WP_015176166.1|2847796_2849461_-|NACHT-domain-containing-protein
MTTPIPQNFVQTIAKQRGVTDAELETVFMALDGQSTATIATKLGISDIAVRKRLGEVYKKFQIGGNGPGKLSELRHQLLFSYHTDRGTSDFSRGKGSLLKMGIGQRQEDWGQAPDVSVFYGRTEELTTLKQWIVSDNCRLVALLGLAGSGKTTLSVQLAKQVQNEFDFVIWRSLRSTPAPSDFLGSLIQLFSNQQKPDVPLGEPAPTGATPTKRIDLNSKISRLVEYLRKHRCLVILDDFEAVLRPAELAGHYREGYEGYRDLIVRLCEVNHNSCLLLVSSEEPTELALLAGEKVRSLKPAISEEIAREIFQEKGLSAQEREWEILLSRYGGNLLALKIVATTINEFFEGNVLKLLEATALFIEEHISNLLAQQFERMSSSEQEIAYWIAIAQSPISLATLREEMLVNSSLSDLLKNLDSLGRRSLIDKLSEGGETVFMLQPLIVQYVTDRLVDRIRAEVLETVKTQGIESMGLLKTHKLSINIAKRKGDKGEPSSSILALVKNRLQVLFAKTTGFEEPLNILKKVASELDDKSILEVGYARENLAQIISEIQR
>NC_019729.1|WP_015176165.1|2845998_2847729_+|NAD(P)H-quinone-oxidoreductase-subunit-4
MIADQFPWLTAIVILPLLASLAIPFLPDTDGKTVRWYALGVGIADFVLMCWVFWTHYDPSISSFQIVEQYSWIPSLGFNWSVSVDGLSVPLVLLAGLVTTLSIFAAWEVDRKPRLFYFLMLVMYSAQIGVFVAQDIMLLFIVWELELIPVYLLISIWGGQNRRYAATKFLIYTAGASIFILIAALAMAFYGGGTPTFDMVELGLKDYPLGLELLLYAGLLIAFGVKLAIFPFHTWLPDAHGEASSPVSMILAGVLLKMGGYGLIRLNLELLPQAHVYFAPIMAVLGVVNIIYGALNSFGQSNMKRRLANSSISHMGFVLLGIASFTDLGINGALLQMISHGLIASVLFFLAGVTYDRTHTMIMDEMGEIGKVMPKVFALFTAGAMASLALPGMSGFASELSVFVGVATSDMYSGSFRAVTVFLAAVGLILTPIYLLSMLRQLFYNCGRLAACDLEDLNLQNQRNNLDEAVCFGNSCVLPGDAPFIDAKPREVAIAFCFLIPIVGIGFYPKMAMQVYDAKTVAVNAEVRQSYIQIAQQNPRIYANQLLVPKIAQAQKAPALDKITGSESASVFGIVK
>NC_019729.1|WP_015176164.1|2844899_2845700_+|Uma2-family-endonuclease
MVLEAPSIKPKLTVTWEPLPANFVLPDDPVENIQQPSLAAALTDALGAAGCIQPEMLIASNLGLVATVNKKIVVKAPDWFYVPQVHPLAEGVIRRSYTPHTDGANVAIVMEFLSEAEGGELSVRATPPYGKLHFYEQIIQVPTYVTYDPYEGILEVRYLQDGRYVLHSANEQGRVLIPQLELYLGIWSGERLGQTMNWLRWWDNLGNLLLWSSEQADQERQRAEQERQRAEQERQRADQERQRADQESQRAQRLAAKLRELGVEPD
>NC_019729.1|WP_015176163.1|2843867_2844797_+|ADP-ribosylglycohydrolase-family-protein
MQQIERYRGSLLGLAVGDALGTTLEFCRPGSFAPINDMVGGGPFRLQPGEWTDDTSMALCLAQSLIEKQGFDPVHQLETYLRWSTDGHLSSTGECFDIGNTVQQALWQFEDTRKPYCGSTDAWAAGNGSIMRLAPVPLFYANNPLEVIEKSAESSRTTHGAATCVDACRYFGALIAGAVNGVAKDVLLSERYCPISGYWGANPLVAEIDEIAAGSFKLRQPPEIKGTGYVVKSLEAVLWAFYNSSSFAEGCLLAVNLGDDADTTGAVYGQLAGAFYGESGIPEKWISQLVDRSLIASFGDRLLTLSRTL
>NC_019729.1|WP_015176162.1|2842845_2843649_-|septum-site-determining-protein-MinC
MTPDASAAAAAAAPQSTPEVSLELQVRLKTEDGQLLLLLPPETNSEPATASASTWTELWQQLKVRLNAGERFWQPNAEVQLMGNDRLLDIRQLQEIAEALSEVELQLKRVHTSRRQTAVAAATAGYCVEQQPPVSSLNKAAAEKPQSLAEPLYLQMTVRSGVEIRHPGTVVLLGDVNPGGSVIAGGDILVWGRLRGVVHAGAGGNTKSVIMTLQMEPMVIRIAKYVARGPETSPAQFFPEVAYVTPQGIRIGRASDFDKSQLVGGNE
>NC_019729.1|WP_015176161.1|2841713_2842520_-|septum-site-determining-protein-MinD
MARIIVVTSGKGGVGKTTSTANLGMALAKRGRTVAVIDADFGLRNLDLLLGLENRIVYTALEVLAGECRLEQALVKDKRQPRLVLLPAAQTRMKDAISAEQMKQLVGMLTAKYDYILIDSPAGIEQGFQNAIAPAQEGIIVTTPEIAAVRDADRVIGLLEANNVKKINLIVNRIRPAMVLANDMMSVQDVREILAIALLGVVPDDERVIVSTNRGEPLVLSETASLAGTAFDNIARRLEGEKVEFLDLNPRPENFFTRLRKFLNTKIM
>NC_019729.1|WP_015176160.1|2841125_2841497_-|cell-division-topological-specificity-factor-MinE
MIYTLLERLFPRTPDNSRDEVKRRLKLVLAHDRSELSPEMVESMRREILEVVSRYVEIDTTGSEFSLESDQRATALIANLPIRRVRLEHPPENLPKNLPANRPENRPEYVPEYVVETLPDTRD
>NC_019729.1|WP_015176158.1|2838113_2840729_+|chloride-channel-protein
MIRIGKLLWSRFSHLLLRPKRLAIFEACLIGLVSGLAALLLAQGVGWLGGWRQQATHLIPAYIALPSIGVLGGFLSGLIVDRMAPAASGSGMSEVKAVLANVPMPLNLRIALVKLVSATLVLAAGMPLGREGPTVQIGAALASQLSRWFPTSPDHRRQILAAGAGAGLAAAFNAPIAGVLFVVEELLQDVSGITLGTAILASFIGSVVARISGSHNLDLDLHLVVFNTSFSAGEIPFYLLLGILAGGLGVLFNRSILTSLTLYRRFLHVGLPWRIGFAGLIAGIALAALPDIFRDNAGLKELLLTGNADWQLVAIVFCIQFFLIVVTYGSGAPGGLLIPSMVLGAALGYLVGVAEHQVLGLSLATTYARVGMAAFFCAVARTPITAVILVFEMTTDFNLVLPLMIVSVTSYLIAELLDEGSLYDRLLAFKGIHLTKETSAQDPWTDLTALDVMQPKVETLSSRIRLEEALQAFSQSSHRTFPVVESGKLVGILTQKDIANFSARGLNGENLVSDLMTPDPVRIDPEDTLAYVLHLLDRHNLNSLPVVEGRRLVGIITRSDIIRVEAAYLNNESLAQPKVERARIIHQTKSPETGQGRILVPLSNPKTSLTLLEMAVAIARDRNYEIECLQVIVVPRHHVLAETPVTTAESQKLLKQAIRLCQAWRVPIHTQILVAHDLSSAILETIEERHIDLVFMGWKGSTKTPGRVFSRVVDTMIRQAVCEVVLVKLTDRAIFERWLVPMAGGPNAQQAVRLLPGLISLSKTAQVRLFHVYDGSQERQADDRADFEPTEEVLKLAAQFLKPQVNASILTTSVCADSVSAAVLSYAKHDRSDVIVLGASREGLLQQMKQGNIPAAISRQSNCNVILVRAF
>NC_019729.1|WP_015176170.1|2853211_2857492_-|PAS-domain-S-box-protein
MEYFKVKKFQISPYLAAISASIAILVGVSILDRSEQRRFFEYNRATTLDRLSTVRSKLEGSLNARLYLMRGLGAYLSNNPNITEAEFAATARILVAQQAGIRAITLVKGTTVAYIYPREGNEGAIGVDLTALPEQRQMVKEVIQTRKTLLAGPVKLLEGDETFISRSPIFLTPSGAEPETGVYWGLTGLILDKNSLIEEAGLNDSSAKLQYALRGKDGKGTSGSVFFGDGSIFDRNPVLLEVTLPNGSWQLAAIPAGGWAANSPFRGWLLFGGDLLALLTGVAVFSWVYGRAKLRSSEVKYRQLVENANSMIVQLDSEGKITFFNEFAETFFGYAEAEIIGKSAIGTIIPKTDFSESDLAAIIRDCLAQPEKYFQHEKENIRSNGERVWIAWTNKPLLDANGNLAGLLCIGTDISDRKQAEIALQASESELRALFAAMNDVILVIDIEGRYLKIAPTNPGLLYKPSAELVGKKVSELFEPEIADFCQEQIRTALATNQTCTFEYNLELASLHKWFAATISPMKENAVLWVARDITERKQAENWLTGQKQILEMIAKGATLGATLNTLVEIIEQQSRDVMGSILLLAPDGEHLLHGAAPSLPESYNAAIHGRAIGPDAGSCGTAAFTRQQVIVTDIASDPLWENYRDLALSFGLRSCLSTPIFSSQGQVLGTFGMYYSQPRYPKKIDLQLIEAAMNLAGIAIERKQAEESLKQLNQELESRVKQRTAQLMQTEERWQLALKGNNDGIWDWNLQTGELFLSDRFKEITGYDEHSPVVDYFDELNKSTHPDDLALVMQALQNHLNKKTPHYIIEYRCWCYNSVYKWILSRGQALWDASGKAVRMVGSITDITERKQAEEALRESEAKFQKLSANLPGIIYQFLLRSDGYSSFPYISAACRELFELEPEDVLQNAALIGNLIHPDDLQNHDESVAISAQALQPWQWEGRFVLPSGKIRWFQINSRPEAKENGDILWDGIAVDVTDRKESELALQESQQFIKKVAEATPGILYLYDLEEQRNIYTNNSLLMILGYTFDDLTAMDSPLMPQLVHPDDLPKILKYHASFVGIEDGETREIEYRVRAADGQILWLQSRDTIFSRNADGQAKIIIGVSQDITTRKQAEEALRQSEVREREKARDLESALLELRSTQTQLIQTEKMSSLGQLVAGIAHEINNPVNFIHANIDYLNQYTKQLLDLVSLYEHEYPEPSSKIVDRIQEIDLDFMAEDLRKLVGSMQVGTERIRQIVLSLRNFSRLDESAMKPVDIHAGIESTLLILQHRLKSRDSRPEIAIIKEFGKLPLVECYASQLNQVFMNILANAIDAIEERYHKLSLPQSETNSGRIAISTGVTLQNTVRVEISDNGTGISEGIVDRIFNPFFTTKAVGKGTGLGMSIAHSIVVEKHKGKIECISSIGCGTTFKIEIPIDKVYK
>NC_019729.1|WP_015176171.1|2857940_2859308_+|TldD/PmbA-family-protein
MQEQLMEAIAPYRDRVDYLEVRLEQSESTAISFRGPQLDAVNRSFSLAGGIRACHKGGWSFVTFNGLAELKDRIEEAVVQSRLVGSEKTLLADVTPIQDYVAVELGRDPRSITLAQKRKLLESYNQLLLDYDPRIQTTMAGYSDRFGVTYFVNSQGTCIAQERLDVTGRFGAIARGEGGVVRQGFESIHSRSDYDVLTNIEDRVKSAAVRAVGQLEAKSVKGGQYPVILDPYLSGVFIHEAFGHLSEADGIYENPKMQELLTLGKPVAIEQLNVIDDATVPGLPGTLKYDDEGVPAQCKHLIKNGVLTTRMHNRETAGKMGESPTGNARALSATFMPLVRMTNTAIESGEHSFDEMVADIDEGVYAVRMLGGQTNGEMFTFAAAQGFMIRDGKLAEPVSDVTLSGNVFQTLKDIESIGNDSVYAYGGCGKGGQSGLPVSVGGPHLRIKNVVVGGR
>NC_019729.1|WP_041623060.1|2859570_2860935_-|response-regulator
MPAKILFVDDEPDLECLISQKFRKKIRTGEYQVFFAHNGVEALSKLLEQPDIDIVLTDINMPVMDGMALLAKLNELVTMVKTVVISAYGDLGNIRKAMNGGAFDFLTKPIDFQDLEITINKTLQHVQELKENERSRQEREEKLRQSEVREREKAIQLELAMQNLQRTQAQLIQTEKMSSLGQLVAGVAHEINNPVNFIYGNLTYVNEYSQKLLDLINLYEQYDANNHPEIEALIKNIELDFIREDLPKMLSSMKVGAERIRQIVLTLRNFSRLDEAEMKPVNIHDGIDSSIVILQSRLKPKPECPPIQIIQEYGDLPKIECYAGQLNQVFMNLLSNAIDSLNQYDKKRSPEQIKNDPSTITIRTSMLNHDWVRISVKDNGLGITSEVRTHLFSPFFTTKPVGQGTGLGLSISYQIVVEKHGGDLKCLSQPTERGAEFVIEIPIRQNNRGEMKEN
>NC_019729.1|WP_015176174.1|2861132_2862455_-|hybrid-sensor-histidine-kinase/response-regulator
MPIKILFVDDELDLEFLICQKFKKNIRTEGWQLFFAHNGVEALEQLKEHPDIDMVVTDLNMPEMDGLTLLSRLNQIDLPLKTIVISAYGDMKNIRNAMNLGAFDFLTKPIDFQDLEITIKKTLRDVQQLKENQYLRQSEAWAREQAQDLQQILQELKKTQAQLIQTAKMSSLGQLVAGIAHEINNPANFIYGNISHVRDYIQKLLNLLHLYQQQYTPPSVEIQTEIEAIDLDFMIADLSQILASMKCGVDRIHKIVLSLRNFSRLDEANIKSVDIHEGIKSSLLMLDNRLQPTRARPEIQVFEEYSNLPLVECYAGELNQVFINIFYNAIDALNEYNKQQSLDDIFAPQLAITIRTVLLEENSRVVIQIRDNGRGMTADVKDRIYEPFFTTKPVGQGTGLGLYISYQIIVEKHGGALKCVSEVGEGAEFWIEIPIRQTKA
>NC_019729.1|WP_015176175.1|2862524_2862893_-|response-regulator
MKVMVVDDEEDVQSLFKQKFRKEIKAGKIEFHFALSAKAALDYLESHKNQSIVLILSDINMPGMNGLELLRITKEKFPDLKIFMITAYADETNYQTAMAYGSDDYITKPVNFDELKEKIFTI
>NC_019729.1|WP_041622498.1|2862910_2865829_-|amino-acid-permease
MATNIRHQQENGYHSEPTQPSLRENLPRRSLMRLPRSLSAVETSGFGLTGHANWFTIATAIQAAIGPSAIFVWLPGILMGIMLNLQVKRIGEYFPDMAGGTPNYTARMLKNYPGLGSYAAIGYFLSWVATLPISAIVLTQLIKVNLNSLGFSCPETLLNITFTLLPFILTFSGTRALSILHAFFVLPTVGVLSVFSIQGLFWLAFSSNSPGFFPTIWPEFTFIDWAKWFYFATYIFYCCDSAASFVADSRNPTKTLQFLKISALGMLPVILGGSWVLMRLATAPDLKDDVFLNVLAACQVLWGPWVPTLVTFLVVASCLLSCATIVSNCPRMLYQLAVDGHISPTFAVVSRRGVFGFGLVFVLVLSLICLAWGNVPRLVAITNVGLVLCLMMFHLSLWLRRDRPEVRWPWWSLGFFAVDAVVLVVGGLAWGWQNFIIGLFFPLGVLAVDAGISRIAFAPFHPSWWIRLYRNRSKSKMPDFVAFQVVILILLIVSAVAVGWMFGFKLYANSTVGLNLFVVLLVTVAFIGVAVACWTSLPQVVSMDEAREGAEQLFTIALDAIVVLDENGVIRQTNPAAESVFGIGARGLIGSHLNKLLPGLGVQPEQWLSRSEQTFNLSDGRSRILEVAISDRFSQDASLSNQDLQQYVAIVRDITDRKQAQEALQKANEELEIKVEERTSELTHSVEQLQNEIEERQRIEENLRAMQNQIIVQEKLASLGSLTAGIAHEIRNPLNFVNNFSEVSAELTEEILQEIENQTERLAPDSREYITELLTDLKANLQKINQHGQRADRIVGNMLLHSRGQRGHWEATNINSLLEEYVNLAYHGMRAKEAAFNMIIASDYDNNIGQVEVVPQDISRVFLNIINNACYAAHKKKQEIGEKFSPQLDVRTRNLESAIEIRIRDNGQGIEPEIFDKIFNPFFTTKPAGEGTGLGLSMSHDIIIQQHRGDIKVETEVGSYTEFIITLPKKTA
>NC_019729.1|WP_015176177.1|2868112_2868262_-|hypothetical-protein
MNTNRQNVKKLAETHRANIHKQLMHRIEVARSSGNQDLVRVLEEEMRQL
>NC_019729.1|WP_015176178.1|2869479_2870652_-|8-amino-7-oxononanoate-synthase
MNTDPYAWIEKALDTVRRADWYRSPQSIETSPGPVVQLAGRRLINFASNDYLGLAGHDRLIQAAMAATKEFGTGATGSRLVSGHRDLHRQLEQAIANLKQTEDALVFSSGYLANLGAIASVVGKRDLILSDKYNHSSLKNGATLSGATALEYSHCNLEDLKAKLEQNRARYRKCLIITDSVFSMDGDLCPLPQLLAVAETFNCMLLVDEAHATGVFGASGAGCAEHFGCTGTPLIQVGTLSKALGSLGGYVAGSAALIDFLRNRAASWIYTTALTPADAAAALEAVRIVQQEPERRLRLRQNIETFKYCAITNHQLPISNSLSPIFTLPLKDAAAALIVGSKLKEMGIFAPAIRPPTVSVSRIRISLMATHELAHLQHLVEALEEVLSFD
>NC_019729.1|WP_015176179.1|2870718_2871654_+|exopolyphosphatase-related-protein
MPLTKKYRLVTRSDFDGLVCAVLLKELDMIDEIKFVHPKDMQDGKIEITNNDISTNLPYVDGVHLAFDHHFSETLRHEKIKINHIIDPYAASAARVLYKYYGGQAKFPDISEAMMAAVDKSDSAQFAREEVLHPQEWVLLNFIMDARTGLGRFKEFTVSNYQLMMQLIDYCKNHTIDEILQLPDVKERVDLYFEQEEKFKEQIQRCAKVYNNLVVLDLRNEEVIYAGNRFVIYALFPQCNISIHVLWGLKQQNTVFAVGKSIFNKTSKTNIGELMLRYGGGGHQNAGTCQIENDKASQVLKELIAKIEQNG
>NC_019729.1|WP_015176180.1|2871777_2872011_-|hypothetical-protein
MGLERKMFRGMFSPGEVVRLKQPCFTPGRLFEPGKYNADELPDIAFEMGLVDHLPPVKAKSSENLNVQNLPAKNLED

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Crispr_ID: NC_019729_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_27

2904685-2904786

TypeV

Consensus_repeat	Method
AGCCGGCAGCCGCGTGGAAGAAGT	CRISPRCasFinder

1 spacers

Cas14c_CAS-V-F

The CRISPR arrays of NC_019729_27

>merge|NC_019729|27|2904685-2904786|CRISPRCasFinder
AGCCGGCAGCCGCGTGGAAGAAGTTGCAGGAGCCAGAGCCCGCTTGCAGCAAACTCAAGCAGGCTTGCAGCGACTGCGAGCCGGCAGCCGCGTGGAAGAAGT

>NC_019729|27|26|2904685-2904786|CRISPRCasFinder
AGCCGGCAGCCGCGTGGAAGAAGT	TGCAGGAGCCAGAGCCCGCTTGCAGCAAACTCAAGCAGGCTTGCAGCGACTGCG
AGCCGGCAGCCGCGTGGAAGAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176213.1\|2916069_2916807_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NC_019729.1\|WP_015176201.1\|2898749_2899364_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176207.1\|2906208_2907426_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_019729.1\|WP_190274385.1\|2898116_2898275_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176203.1\|2901600_2902152_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238979
NC_019729.1\|WP_015176212.1\|2914174_2914369_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274388.1\|2915125_2915464_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176202.1\|2899876_2901535_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NC_019729.1\|WP_015176210.1\|2909185_2910907_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239492
NC_019729.1\|WP_015176199.1\|2895378_2895711_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176200.1\|2896231_2897800_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015176205.1\|2903183_2903594_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274328
NC_019729.1\|WP_190274386.1\|2899620_2899767_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176214.1\|2917309_2918722_+\|sensor-protein	unknown	unknown	gnl\|CDD\|226701
NC_019729.1\|WP_015176211.1\|2911097_2914037_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|235751
NC_019729.1\|WP_015176198.1\|2893497_2895264_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_019729.1\|WP_190274387.1\|2914747_2914975_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041623061.1\|2907643_2908864_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_019729.1\|WP_015176215.1\|2918738_2919950_-\|transposase	Cas14c_CAS-V-F	-	gnl\|CDD\|223747
NC_019729.1\|WP_015176204.1\|2902161_2903172_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176210.1\|2909185_2910907_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239492	cd03398, PAP2_haloperoxidase, PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.	1.97685e-82
NC_019729.1\|WP_015176207.1\|2906208_2907426_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	7.81601e-87
NC_019729.1\|WP_015176211.1\|2911097_2914037_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	1.21447e-89
NC_019729.1\|WP_015176203.1\|2901600_2902152_+\|AAA-family-ATPase	gnl\|CDD\|238979	cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.	5.46146e-14
NC_019729.1\|WP_015176202.1\|2899876_2901535_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_019729.1\|WP_015176213.1\|2916069_2916807_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	7.87213e-23
NC_019729.1\|WP_015176200.1\|2896231_2897800_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.93034e-81
NC_019729.1\|WP_015176205.1\|2903183_2903594_-\|hypothetical-protein	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	0.00133536
NC_019729.1\|WP_015176214.1\|2917309_2918722_+\|sensor-protein	gnl\|CDD\|226701	COG4250, COG4250, Predicted sensor protein/domain [Signal transduction mechanisms].	1.33883e-46
NC_019729.1\|WP_015176198.1\|2893497_2895264_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	0
NC_019729.1\|WP_041623061.1\|2907643_2908864_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	1.46416e-76
NC_019729.1\|WP_015176215.1\|2918738_2919950_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.67833e-55
NC_019729.1\|WP_015176204.1\|2902161_2903172_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.71191e-132

>NC_019729.1|WP_015176205.1|2903183_2903594_-|hypothetical-protein
MNRPQSVTVLAILQVISGVFSLLDGLFILLFAGIFGGLGAAVGGAKVGTVIGGFIAIFAAISFILGLLSLLLAWGLFQLKKWAWTGTLIVHIIATLAQIAKMLGSGGTAVNFLTLGFAVASIYYLLRPDVKQAFLV
>NC_019729.1|WP_015176204.1|2902161_2903172_+|ABC-transporter-permease
MFQYIAKRLLGLLPVLFGITLLVFIFLHLIPGDPATVLLGERGTPEQVEMLRARLGLNQPLPLQYLAFLWSLLRLDLGNSIISGIPIIDEITSRLPATFELSVVAMLVALVIGIPAGILAAVRKNSWLDNLAMSGSLIGVSLPVYWLALILIYLFAVYLKWLPPSGRISVDLGLGFKSMTGIYILDALLRWDLAALRDAIAHLILPALTLGTIPLAIIARITRSAMLEVLSQDYIRTARAKGLPEYWVILKHALKNAFLPIVTTIGLQFGTLLGGAILTETIFSWPGIGSWIYSGILTRDYPIVQGGVIFVAVTFVLINLAVDISYAFFDPRIQYR
>NC_019729.1|WP_015176203.1|2901600_2902152_+|AAA-family-ATPase
MESNQQPANHQPQIILITGNMAAGKSSVAQSLAERLPKSVHLRGDIFRRMIVNGQAEMALNLSAEAYQQLQLRYHLAAMAARHYLQAGFTVVYQDIIIGSALAEVLATFHDVPLSAIVLCPKAEVVAARDAARTKTGYANETMVYAFDRILRTETPRFGYWLDSTHLTVEETVDRILANLQGE
>NC_019729.1|WP_015176202.1|2899876_2901535_+|ABC-transporter-substrate-binding-protein
MRLLKPWRLVLLSIVFGMAVILSNCGTPSNTASKNSPTPPTPAAVPAGALVYGAGGPPVNLEPGNITDGNSVIVIDQIYNRLTDFKPGTVELEPSLATEWSSSTDGKTWTFKLRSGVKFHDGTDFDAEAVKFNVDRWWDAKNPNGFREAGKNYPIWKNLFGGFKGEKDSLVKDVAVVDKYTIKFVLNQPFAAFPSAIGSGYFGMASPAAVKKAGAQYGTPGSLAVGTGPFVFREWRSGDRIVLEKNQNYWKTGAPKLDRLVIRFVEDPAARLAQLRAGQLDFTVDLTPDQLQEIQADANLEAVLRPAFNVGYLALNPSYEPLAKPEVRRAIAQAINQPEIVKAFWGELGKHDAEFVPSVLNWAASETVKDYEFNPQQAKAMLAKAGYPNGFDLDLWYMPVGRPYFPTPKPIAEALAADLSAIGIRVKLLTKDWSAYLADRLKPPGFQAFMMGWTGDYGDPDNFYYPHFGPGATADLGNWKNPKVIELLDKGRATADRAARAKIYGEVSEILHGEAVRLPIVHSQPLLGKRKNILGWIPSPLGSESFEEVSKN
>NC_019729.1|WP_190274386.1|2899620_2899767_+|hypothetical-protein
MTSLAGRETLAFMLVASPNVKVWLDIFPSSMISSGCSILFVNLDGFLI
>NC_019729.1|WP_015176201.1|2898749_2899364_+|hypothetical-protein
MSVKQSHYETLLAEYSESSAAIALLKKYRVYMEMIPSIRRAHESLITIPLPIARLRDGVSYAGSSGTSISPGQAVCLPCDLAILMCDPEWKVKIGVEILIFIHRPGEEFSELLGRWRQSQVWLDKGYEWVMPHRYRHIYSDEAEAVHPLFVLFEETPELIQRGLMAAGLPFVVESFESGSEEVEEEEFLGSGELGSIGEESFDL
>NC_019729.1|WP_190274385.1|2898116_2898275_-|hypothetical-protein
MRDSLFAIGMYQFASTEVIAARLQELLSIPQAQERHPAILHIIKMIISQQKT
>NC_019729.1|WP_015176200.1|2896231_2897800_-|protein-kinase
MNLAPATVLQQGKYKINATLGIGGFGITYRAIHTHLNQTVVLKTLNESLRQHPESAQFQQQFIAEAQRLSQCQHSNIVRVIDFFEEAGQSFIAMDYIPGQTLAQIVETDRPLPEAQALHYIRQIASAVSTVHHSGLLHGDIKPENIIRRADSHVVMLIDFGIARGFTAGTTQTHTNLLSPGYAPIEQYLYDGKCTPATDIYALAATLYYLLSGVAPVAAPLRDRIPLTELRQFQPNLSPGIERAILQGLEIDPHNRPQTVENWLTMLQETERVSVKRKGKQTLRLPAPPPPQLTFMAFVVTAAIAGWMGFDLAWHYNSTSLSNRPKIESFPSLEDLLKSRDLSGPMFGQPSVESSPLYPIELNKRPKPPLDSSKIPEQIDPSETSAEPSESPSPETPAPEPEAKPEPSPTPKPAEEPSESPIPEPQTEIEPAPQPEAAPVPEVAPLPPEPPAAPAPPAPGSPSAETLPPSESPSPVIASPIERSPEPAIPSRSGNNSDSPIAPDSPPPVADPAVPFPEPATN
>NC_019729.1|WP_015176199.1|2895378_2895711_-|hypothetical-protein
MSKPPVHAFFVGRALAEALYEQLESAATNAFSELGKFDAEQRERLRQFTDRVVERANKASEEAMQTRTGTASTTTIQDIHPADLQATIDELRAEVALVRSELQRYRSTLP
>NC_019729.1|WP_015176198.1|2893497_2895264_-|AarF/ABC1/UbiB-kinase-family-protein
MSALLDDSVNRQRSPKHTGEADEPKTASKSYKSKAYRWNREKYSRKRRFFDIWAFVLLWLASLWLDSKNWSYWGGVTEEKKVARRRFQAIWVRETLLDLGPTFIKVGQLFSTRADLFPAEFVEELSKLQDKVPAFSYEQLEVIVEQDLGKTVQELYRSFDPVPLAAASLGQVHKAQLHSGPEVVVKVQRPGLRKLFEIDLQILKGIARYFQNHPKWGRGRDWMGIYEECCRILWLEIDYLHEGRNADTFRRNFSNCDWVRVPRVYWRYAAPRVLTLEYLPGIKISHYEALEAAGIDRKLIAQLGAKAYLRQLLNDGFFHADPHPGNIAVSPDGCLIFYDFGMMGQIQSNVREGLMETLYGIASKDGQRIMDSLIELGALVPTGDMSPVRRSIQYMLDNFMDKPFENQSVSAITDDLYDIAYNQPFRFPATFTFVMRAFSTIEGVGRGLDPEFNFMEVAQPFAMQLMSNGNGPDTGSSIFNEIGRQAAQVSSSALGLPRRIEETIDKLEQGDLRIRVRSAETERLLRRMSSAQMGTNYALLMSAFTLSATILFVSNQVWPAVAVAVLAAGAGFAMLRLFRRIDRLDRMS
>NC_019729.1|WP_015176207.1|2906208_2907426_+|ABC-transporter-permease
MDIVESVKMAVTTLMANKLRSSLTMLGIIIGNASVISMIGIGEGAQTFIEGQVNSLGSNLLFIIPGSPEAQTRPVIPPQTLVVEDAEAIASQVPSVEEVAPTLNESQLVTYRNKNVSSSIVGTTPEFLTVRSFDVGQGRFLNKLDLERQENVVALGSEAAEQLFGNTQPLGQYIRIKNSTFQVIGVMQAKGSSFGDNQDMNVYLPLTTMANRIVGRSSPYGTKVTFISVAIKDETMMQAAQFQIENLLRLRHKITKEDDFTVRNQKDLMKTLGSITGALTLMLAFVAAISLFVGGIGIMNIMLVSVTERTKEIGLRKAIGASQQDILIQFMIESVILSAAGGAIGTGFGIGGVLLVSAFTPLQASVSPVAIALAVGVSGSIGLFFGIVPAKQAAKLDPIVALRSA
>NC_019729.1|WP_041623061.1|2907643_2908864_+|ABC-transporter-permease
MNFIESVKMAGQTLLANKTRSSLTMIGMIVGNASVIAMIGIGEGAQKFVAGQVQSLGTNVLIVRPGVPNARRSTISSAPQTLIVEDAKAIATQVPSVQGVSAELNSSEIVRYSNKNVSSLIFGTIPEFLEVRSFEMAKGRFLTELDVKQSNQVVVLGSELAEKLFGNTNPLGEQVRIKNVSVKVIGVLAPKGTSFGTNYDNSAAVPIATMANRIVGRKSPYGLAVTSIFISIKDESQMDAAQFQVENLLRLRHKVTTEDDFTVRNQKDLMATMGAISGALTLMLTAVASISLLVGGIGIMNIMLVSVSERTQEIGLRKAIGASQQDILFQFIVEAVILSAAGGIVGTCVGIGGILLVGSFTPLQAGISPVAIVLAVSVSGAVGLFFGVVPARQAAKLDPIAALRSA
>NC_019729.1|WP_015176210.1|2909185_2910907_+|phosphatase-PAP2-family-protein
MASLTPSPQFDYLEGTTQADKFNGLDGNDIIYAKSGDDYLEGDAGKDKICGDQGNDTIVGGDDDDILWGGKGSDLIAGDSGNDLIYAGAGSDTVSGGTGDDIFAIAKGSGGPTVATADYIADFGNGNDKIRLLDGLTFEDLNIQPGTNPNSTVIQDKLTGEYLAVLQGVNSDTINRNNFTTQISGNAVLDWNTTLLDAVRTASTAPPLASRNMAMVHAAIYDSVNSISKKYSPYRVSIDAPAGASEEAATAAAAHRTLVSLYPAQAGKFDAALQSSLAKIPDGKAKQDGIALGQQVADQIISLRSTDGITKVVQYTPKTEPGSWVPTPPALAAALAPQWGEVTPFAMTSGSQFRPSGPPALDSAKYAEEVNYVKEIGKSDSLTRTPDQTAIAKFWANGAGTFTPPGHWNQIAQDASALAGNSLEDNARLFALLNIAEADAAISCWDAKFQYNSWRPVTAIRQADTDNNPNTTADPQWTPLLTTPPFPEYTSGHSTFSGAADAVMSSVFGSDFGFGDKGDPSVNTLRTYENFTEAADESGMSRLYGGIHFMSANLNGLSAGRNVGNYVVQNFLV
>NC_019729.1|WP_015176211.1|2911097_2914037_-|glycerol-3-phosphate-acyltransferase
MPLGTIALLLAASFSLGALPLTGWAVRVFARRDLRALGTGNVGVSAAFIHGGKLAGIAAVLAEIARGMVPVLAGRFWFPDAPEIAIALLIPLVAGRYAIARGGGVTNAVWGLLVFSPPVAVSSGIWGLLVWGLAQRWWGEGDRARLFASRCGCLCTPIWVWVWRQSIPEFLAAAGLAVLLAAINFIQGDDMALSKSEQLFSLDDSLDAAICGDKAAKLSQLKRAGFNVPAGWILSQEARIGHRASGIGHRGNSDELSSIPNAVIQTLKSQIQNRMIVRSSAAGEDGNTSSAAGQYQTIGPVSTKSELLDGINRCRQSYWTAEAVAYRRQRQLPDTQMAVLIQPYIDSQIAGVMFSRNPLDGGSQVIIEALPGGAEAVVGGQCTPVHLEIDFSKPELLEKQLNELQSNSIIPQYIIAELVKQAQAIEAFFHGVPQDIEWSWDGEKVWILQSRPITNLQPFWTRTIAAEVIPGAIRPLTWSINRPLTCGVWGEIFKVVLGDRAIGLNFNETATLLGSHAYFNATLLGEIFRMMGLPEQGLEFLLRGQKMGKPPLGKILPNLPGLWRLVQRERALNAEFNGDRTSIFLPALQSLQNYQLPMPNAQCPMPDHQYLTELLERAEQIQEWLKPITYYNILGPIGLAIRKAIFRVDDDWLENDSAPEIASVRVLQQLAQKLRQAAVSQPDETVSVAHLAQTFAESPALQAEFEKWLDTYGYLSEVGTDIAVPTWREQPEIYQKLLITMAQKAETNLVEKRAKKLNFSQNSRLDKCQERAIVKNEISEIYARLLAHLRWTFLEIEACGLAMQVFQESGDIFYLEFGEIQQWIRSGASVSFQDTISQRRDRLAADRDRQIPPVVYGNLLPNSQTRAIDSATSATNILQGIPASIGRVEGFVKICRTASADLGENAIAVVPYTDAGWAPLLLGATAIIAEVGGQLSHGAIIAREYKIPAVMNISEATTRLRDGQKVRVDGYLGTVELLE
>NC_019729.1|WP_015176212.1|2914174_2914369_+|hypothetical-protein
MTDVSLTTPILVLVAGFIAAVTIGSIAWYNSKRPPGWESKERPDFVPKVDKDDLIADVSDSKRK
>NC_019729.1|WP_190274387.1|2914747_2914975_-|hypothetical-protein
METDKFDPALGGDKTLLEAPDGQPAKDQPIFDRSDPDANILERVGAAFKDASGFLKDSAEDAKESSVTKLNPLQK
>NC_019729.1|WP_190274388.1|2915125_2915464_-|hypothetical-protein
MNTVTAFFKRLRIGRFLTQFLTVFMAGVLLFTSTACNSGDVRGARPENPPVQMGGMNNPHKAGGDGYTNYQMSTDPKVNQSPAKAEKNRADLSIAGDRLLASTTAESNSSKE
>NC_019729.1|WP_015176213.1|2916069_2916807_-|DUF2993-domain-containing-protein
MLQQNRSFGEQAIDKVAEIAIASKLDESENLSVTVNTDPIQLAQGEVEAVAVEGKGLVMQQDLRVEELQIHVKDIAVNPLTAMFGKIELNGPAFGGARAVLTESDINRAFNSEYISRKLKNLKVTVDGQLRTIDVKTIECQLLTGKIALNAEVLVQETASTVKIYFTAKPQIAAGGWAISLQDVEYPENKEFSPELTEALADKAGEVLNLRNFELEGMSLRIQQLNVEAGLLTLQAEAKVEKFPD
>NC_019729.1|WP_015176214.1|2917309_2918722_+|sensor-protein
MNSESTLARLQATLPDGKLPSSYGVYFKNTLVALCHALEDHILQTSGGDDIELKPLVLVTFQQGKWYLQEADRYLDIANASRHVVIGAVADSGFATHKTGQLENVSLINLDENDPIIEEWNLIILAPTYKAMVLCRELSAEEYLPEGKPEVDTERKFYGLWSFDQSLVSAAAEIFIEQTRHYNSPLADSLLAMYRDIQATIGPPLADISGVVSRIVTYLQSSQQQMVAINRQTRELWELEGQALRVSRNLNANKLQAFLRMAQRVDERDTSNPTASLQVAALSETLGQLLDLPALQLRRLRLAGLLFRVGLVSAPNEVFDRTPDGFDPATFSFWRDRSFIGSQLLQAMPELAPVAEIVKHQLEYWDGSGRPDGLRAEAIPIASRILGLVADFQELTQPRGDRPALSLSEALEQCRELSGTRFDPALVETLSNVVRLAEMGLMQLPNRPSQLPNVWLEDLGDRTTATAPAL
>NC_019729.1|WP_015176215.1|2918738_2919950_-|transposase
MLVFEFKASGKKQQFDAVDEAIRTVQFIRNKALRFWMENEKVDKYALNKYSAVLAKEFPFCDELNSMARQSSSERAWSAISRFYDNCKKKVPGKKGFPQFQKHNRSVEYKTTGWRLADDRKSITFTDKKGIGKLKLKGTRDLHFSQRSQIKRVRLVRRADGYYVQFCIQVDRSEKIEITGNAIGLDVGLKEFYTDSNGIAVDNPRFLRKGERRLKKAQKRVSKRVKGSQNRKKARAILGKRHLKISRQRKDFAVKLARCVIQSNDCVVYEDLRIKNMVKNHCLAKSINDASWYMFRIWLEYFGKVFGRITIAVPANGTSQECSSCGTIVKKSLSTRTHACRCGLVLDRDWNAAKNILSRGLSTAGHVGTWILDPNACGELTATDVEVILHRQVDSANQESPRL

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Crispr_ID: NC_019729_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_28

3028538-3028647

Orphan

Consensus_repeat	Method
AACCGGGTTTCTTCCGATATTTCTCGT	CRISPRCasFinder

1 spacers

2OG_CAS

The CRISPR arrays of NC_019729_28

>merge|NC_019729|28|3028538-3028647|CRISPRCasFinder
AACCGGGTTTCTTCCGATATTTCTCGTGCGAGGCCGAAAATTGTCGCAGAAACCCGGTTTCTCGCCACGCAGCTAATCCCAGGAACCGGGTTTCTTCCGATATTTCTCGT

>NC_019729|28|27|3028538-3028647|CRISPRCasFinder
AACCGGGTTTCTTCCGATATTTCTCGT	GCGAGGCCGAAAATTGTCGCAGAAACCCGGTTTCTCGCCACGCAGCTAATCCCAGG
AACCGGGTTTCTTCCGATATTTCTCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176290.1\|3024409_3024889_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NC_019729.1\|WP_015176295.1\|3030871_3035350_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_019729.1\|WP_015176285.1\|3021344_3022343_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176288.1\|3023615_3023885_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_019729.1\|WP_015176293.1\|3027858_3028455_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015176291.1\|3025474_3026929_-\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NC_019729.1\|WP_015176292.1\|3027222_3027645_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176300.1\|3041539_3042832_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984
NC_019729.1\|WP_015176303.1\|3045920_3048095_+\|glutamine-synthetase-III	unknown	unknown	gnl\|CDD\|226477
NC_019729.1\|WP_015176301.1\|3042836_3043496_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379470
NC_019729.1\|WP_190274426.1\|3022914_3023301_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NC_019729.1\|WP_015176298.1\|3039018_3039810_-\|DUF3050-domain-containing-protein	unknown	unknown	gnl\|CDD\|378614
NC_019729.1\|WP_015176284.1\|3021175_3021403_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176296.1\|3035580_3036189_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015176289.1\|3023923_3024337_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_019729.1\|WP_015176302.1\|3043855_3045130_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NC_019729.1\|WP_015176294.1\|3028930_3030826_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_019729.1\|WP_015176283.1\|3016976_3020525_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_041622513.1\|3040690_3041293_+\|2OG-Fe(II)-oxygenase	2OG_CAS	-	gnl\|CDD\|379309
NC_019729.1\|WP_041623084.1\|3036337_3038695_-\|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl\|CDD\|224418

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176290.1\|3024409_3024889_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.18988e-33
NC_019729.1\|WP_015176296.1\|3035580_3036189_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	6.75654e-35
NC_019729.1\|WP_015176288.1\|3023615_3023885_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.66584e-09
NC_019729.1\|WP_015176283.1\|3016976_3020525_+\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.82347e-55
NC_019729.1\|WP_015176291.1\|3025474_3026929_-\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NC_019729.1\|WP_015176300.1\|3041539_3042832_+\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	3.3913e-55
NC_019729.1\|WP_015176295.1\|3030871_3035350_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.69908e-57
NC_019729.1\|WP_015176301.1\|3042836_3043496_+\|hypothetical-protein	gnl\|CDD\|379470	pfam14103, DUF4276, Domain of unknown function (DUF4276). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 224 amino acids in length. There is a single completely conserved residue E that may be functionally important.	3.92058e-06
NC_019729.1\|WP_190274426.1\|3022914_3023301_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	2.26133e-10
NC_019729.1\|WP_015176298.1\|3039018_3039810_-\|DUF3050-domain-containing-protein	gnl\|CDD\|378614	pfam11251, DUF3050, Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.	1.23151e-129
NC_019729.1\|WP_015176303.1\|3045920_3048095_+\|glutamine-synthetase-III	gnl\|CDD\|226477	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only].	0
NC_019729.1\|WP_015176289.1\|3023923_3024337_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	1.91015e-69
NC_019729.1\|WP_015176302.1\|3043855_3045130_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	8.68558e-36
NC_019729.1\|WP_015176294.1\|3028930_3030826_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.30444e-90
NC_019729.1\|WP_041622513.1\|3040690_3041293_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	2.239e-09
NC_019729.1\|WP_015176293.1\|3027858_3028455_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.76147e-45
NC_019729.1\|WP_041623084.1\|3036337_3038695_-\|glycoside-hydrolase-family-31-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0

>NC_019729.1|WP_015176293.1|3027858_3028455_-|Uma2-family-endonuclease
METITLNLPAAVALTDEQFYQLSIANEEWRLEQTPEGELIIMPPTGGESGIRNSDLTTDLNLWNRQTRLGKVFDSSTVFQLPNGAKRSPDAAWVLLERWEALSAEDKRKFPPLCPDFVIELRSQSDSLETLRAKMRYYRTNGCRLGWLIDPQTPLVEIYRLSEDVAEVINFSFDQPPTLSGEDVLPGFLLDLTPILNP
>NC_019729.1|WP_015176292.1|3027222_3027645_+|hypothetical-protein
MEDLQYLAAWVKEQHAREYILTWLLSQQGLWWSDGDIYQAVLQKSGKLLKAYVQKRQAGELFEGISEKLGGDENWDDLAASLARILAVYQEELSLLQERDRKGDGLKKNLISQPLTGDPLPLLEVQQALPDPYADTLTGR
>NC_019729.1|WP_015176291.1|3025474_3026929_-|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase
MTKQNFGLIGLAVMGENLALNVESRGFSVAVYNRTAAKTDDFMALRAPGKNIVGTKTLTEFVDALETPRRILVMVQAGKPVDAVIDQLKPMLSPGDMIIDGGNSLYDDTERRTKDLESIGLGFVGMGISGGEEGALNGASLMPGGTRTAYGLLEPILTKIAAQVDDGPCVTFIGPGGAGHYVKMVHNGIEYGDMQLIAEAYDLLKNVGGLNGKQLQEVFAEWNTTDELNSFLIEITANIFKYIDPETKQPLVEVIMDAAGQKGTGRWTVMSALELGVSIPTIIAAVNARIMSSYKDERVKASQALTGPSGKYEGDTKEFVNKVRDALYCSKICSYAQGMALLSAASKSYNYDLSLSEISRIWKGGCIIRAGFLDKIKKAFKDDPALPNLLLAPEFKQSILDRQSAWRDVLATACQLGIAVPAFSASLDYFDSYRRERLPQNLTQAQRDYFGAHTYERTDKPRGEFFHSEWTHAAEESLQTGTTD
>NC_019729.1|WP_015176290.1|3024409_3024889_-|restriction-endonuclease
MLDFILVAAIVFAAVNMIWEWVDTWKEEEPRKCLSDSGILEVDEMTGKEFENFLAFHFINCGYIVNLTKDSQDYGADIILYKDGSKTVVQAKRTKRPVGIKAVQEVAGAVRYYKGNKAIVITNNRFTKNAYNLADSNQVELWDRKRLMEFILIAKNCSK
>NC_019729.1|WP_015176289.1|3023923_3024337_-|aminoacyl-tRNA-hydrolase
MLQISNTVFLDDREIEISAIRSQGAGGQNVNKVASAIHLRFDIPASSLPDRYKQRLLQINDQRITSEGVIVIKAQEHRSQEQNREEALRRLQELIKSAIVIPKRRKPSKATRSSQRKRLDSKTKRGQIKALRAKITD
>NC_019729.1|WP_015176288.1|3023615_3023885_+|helix-turn-helix-transcriptional-regulator
MPRKKQTQESKDIPALQILREAVGLSQAALAKQIPDKTGAKTLSQQAISNWERGLDQPELTIAQMKALCKALGKTLNDLPNDLGPPNPD
>NC_019729.1|WP_190274426.1|3022914_3023301_+|helix-turn-helix-transcriptional-regulator
MGLDVANIPDDLPALSVLHLSGEVKKRGIVKQASCSVAENSEEKEKSPLRLLREQAGLTRPQVKQHIGVSERMQADWESGKSMPTVENLAALANLYQVSLKTMFEVLGLDVTKIPDDLPSRSPSPNDN
>NC_019729.1|WP_015176285.1|3021344_3022343_-|hypothetical-protein
MSTSIDNFYLGDVASNFHFAGPLLDFEEEIQNQSPFHDLDYLTGEIKRGFLDYVRQGIMLDAIRKLRLYKGKFKTFKTYCEQALGRQYFYCTQIIKAASICLRLIKAGFEILPSCVAQVVPLFKHAITDQYGDCRLQEKWQEVVDVIPKERITAVTIAETVDNNPNLRLKQIRIKTDTYALLTKKAAAAGLSISEFLARLVGEYNPRNLEQPAEHTPEQEEILDQLDAEFKKPVAEKSPTAPKDKVKSKGFGVKVEPKGGKREVKAKSSEGEVKAKSSEGEIKLKNRQTEIKAEKLSNSFKEKNHEVICPKSNHASTEINGGSTERNSVPPY
>NC_019729.1|WP_015176284.1|3021175_3021403_-|hypothetical-protein
MRQLKLMEVQLNEIQCHLIKATVLNWWQIVLPDGQKIAIEYAGGGHWIFRANGLEKSHPEVRLAVLRAIAQGCRR
>NC_019729.1|WP_015176283.1|3016976_3020525_+|PAS-domain-S-box-protein
MNVEGTHSLNDREELTVNFPQELCTDCQALEARRFAVIVDRMAEAFISINSEWHCTYANHKAEQLLNRKRQHLIGKNIWTIFSIDLTSELYKYCHQAIATPTAIEFEEHYPSLNKWLRIRLIKSEDGLLIYFQDTTETSILDRQLKAEIAKCQEVKATLQKEQDFLKAILNNVQAGIVACDADGILTVFNQAAKDFHGLPQQPVPPTQWAQYYNLYLPDGKTPMNTEDIPLFQALQGHNVRDLEMMIVPQQGTARMLLATGQAIIAANGEKQGAVVVMHDITKPKQVETALREGEAQLSSIFQTIPDGITILDSTGEIIAANKAAERILRLIPSDIVERGYNAPSWFITTVEGHPFPEEELPFARVMQTGEPVYGIEQAISHADGTRTILSINASPLFDAEGQIINIIAAFSDITERKQTEDERVQLVQEQAARAVAENSQQQSAFLAQVSAVLSSSLEYEQTLQSVAKLAVPYFADWCSVDLVNDDRTIDRVAVAHCDPEKVKFGWELAQRFPRHLDDGYGIAKVIQTGQIEIGIEITDEQLVAAVSNAEYLEIIRGVGLKSCIIAPLQARGRVLGSITFVFTESDRRYRLEDIALAEDLAQRAAIAIDNARLYNETQQAKLAAELAANRTARLLAVMTALSESLTSAQVAQVIIEQGMSALGASCGLVAVLNQDASELEIIQAIGYEHVGEFPRSFSIHAPYPLAEAVRTGQPAWLETIENRIARYPDLAQAYAKVGSKAWISVPLLIEGQAVGGLSLSFSTVPQLSESDRAFVLALAQQSAQSIDRARLYESESQARAQSEAANRIKDEFLAVLSHELRTPLNPILGWTRLLRRGNLDSSKTAVALETIERNTKLQVQLIEDLLDISRILQGKLSLDSTPINLKTTLKAAIETVSLAAEAKNIQIETQVEPNVGDVLGDATRLQQVVWNLLTNAIKFTPTGGRVEVELKTIDSYAQIQVRDTGKGIKREFIPYVFDTFRQADSSITRTFGGLGLGLAIVHHVVELHGGTVKAESFGEGQGARFTVTLPLLARSNDANSDRKDNLSVNARTSPLARLCILTVDDEIDNLELVQCILEQAGATVFSVSSATDALQQLTKIKPDVLIADIGMPQMDGYMLIRQVRQLSTQEGGEIPAIALTAYAGETNQQQALAAGFQRHLPKPVEPETLVETIELLLPQIE
>NC_019729.1|WP_015176294.1|3028930_3030826_-|ABC-transporter-ATP-binding-protein
MSRPDTYPQTMQAIQITTFQALWRSLGLIIKAAPIELRHLIILNIIAGAAPSAVLFLDKLIIDEVSRLLSQTQTAQPFALMLSRPILLWSIAGVLSLRLVGDALDTMSSFAATSLRDRVQGFVEGKVLEKVANFDDIALFENPELLNIVELAKTGVLKIQQLAFTISMTITGIFIFIPSIGLAAAIAWWVPVVMLISSCPSIYIQRKYSKIIWRVQRKQAKISREMNLSARVLTGEEYAKELRLFGLQELWLKRWQGQFLQFFSEMQQIRKKGAIVLLLWSVFSRIGVALPFVYVVMGALGGRYTLGDLALYSGLIVQVEQSLQLLIGNYANLYDISLGVSPIFQLLELKPELQSPLVDVASRLPSLPEDGQDSRPTKDKIGIEIKHLSFCYPGSNKSTIADINLTINPGEMLVLVGENGAGKTTLGKLLGRLYDPTSGTIDWNGKDLRSYPLAYVRSRIAVVMQDYARFPSTVRENVGFGDLLSLSDDTAINEAISEAGISAKVNSLAAGLETPLGKQLEDGIDLSGGQWQRIAIARALMRLSTAEVLIFDEPTAALDPKTEHEIYSIFRQIAAGKTTIVISHRLGLAKIADRIAVMENGKIAEIGTHDELIASNGIYCSMFTRQASSYI
>NC_019729.1|WP_015176295.1|3030871_3035350_-|hypothetical-protein
MSTRIEEVKKQLSSQSEQERLAALSETLNHGQQGLELLIEQSIKDQSDRVKQFAYRVFRGDNSYLRGNTPENLTPCPTDVITSLAISPDNTILVGGSWKKIWVWDLQTGATIRSIEGHSHWVLSVAISPDGNTLVSGGADTNIKVWNLKTGQVIRTLNGHSTWITAVAIPADGKKIVSGSTDKTIKIWELNTGKLSKTIKNEKELFCVLSLCISHDGKVIACGSTNNKITLWNLDSGQLIRSIEGHSAWIQSLSITSDNTTLISGSRDGVVKFWESKSEKESSNQSGSVLGKGLVDVAATVAGFSLGGPIAVGAWVLGRVIVGALDNKDLSTLPLQNLECTKTYPNNQSINSLDCSVAQNILVVGFSKKIKIFDLKDYRIIYTLPEQPGFISSVVVSPNGKTLVIAGKDWVTLLEAKTGKALHAIKGCSYPKLSKIVIIVEPPLQLLYGQSKRFTVKGYDQDNREMNLNNKDVKWKSAGGEIEQDLFTAGQMEGSFEVKAKIGIFEASVPITIISPPTITEICVTPSSITLEFKKRQQFTAQVLDQRRNPMQETVLWEVSGGGKIDQNGNFIAGSKPGKFEIIASVSSIRRVIPITIIEPPRLTELIIISSIPQLEFGQSFHFQVKGLDQYGDNIQTGKVTWSAISGGGTINQNGNFIAGSKQGNFEIIASVRSIHRVIPITIIAPPKLKELIITSSIDQLEFGQNFQFEVKGLDQYGDNIQTGKVTWSAIRGNIDNQGIFYAGEREDTVIIKASVGTINTCTEIKVYEPSRLTFLEILPSSVILEPGESQRFNVVALNQRREDISVSDIEWNATGGLIDRTGNFCSGEQQKGNRQVTVKVGHLSANAEVTVIPVLRGLKISPEQVEIKPEEAFTFTVTGFDQVGDPLNITNVIWTTTNGGSITDKGTFKGNYNKRKVTVTAKSGKVSTIAKVILLPVLRRLELQPGFVYLKSSEHQTFVVKGFDQFGYPIALGEVYWETTGGQIAQDGTLTFTQNEQGYFQVTATSQLAPKYTQEIRKLFLYTGISSKIISYLISYQPLLQEMFALDSGSTEPEEHLDDSRLDSVSTDTDEHLDDSIVDETQLEISTQATQETDTILEADEQLDIEVARPTDIDTIVDTNVLDFDTALEGWLFKKLRKLVARIFFSISRFCLSEASANLRASADVFVLAVEYNPYQYFKCLNILNGHSGFVRSLAITPDGQKLISGSWYHPIKIWDLQTGYLLNTLEPHTSDVECFAITPDGQTLVSADWDNTIKILDLKTNELRHSLPCSNQVYFVGITPDGRKLISVEESNIIQIWDLNNQDFLKNLGTNSLHSRHLYGWNRNSIVISPDQQRIIVGREIIKSYDLITGKLVTIIGRKLGYIYALAITPDGKTLISSHDKKIKIWDLTAKKYPDVRLTLKSSAEGVYALTLTPDAQRIVSAGRRKINDDYESFIEIWDLNTGEKLHSIKEYSTTESYVCCLAITPDGKQIISGHRDGTIRIWGIPELSL
>NC_019729.1|WP_015176296.1|3035580_3036189_-|Uma2-family-endonuclease
MTQTISKLITFDEFLEGKPENGHYELHNGVIVEMPNPTGKHSASAGFQAIEFGLEIRRLQLPYFIPKECTIKFSDNSGYDPDVIVLDKQAVAANESRWERESVITQGDSVKLVVEVVSTNWRDDYAHKMIDYEALGIPEYWIVDYLGLGGSRYIGSPKQPTLSVYQLVDGEYQIKLFRGDDRVESAVFPELNLTAKQIFNGG
>NC_019729.1|WP_041623084.1|3036337_3038695_-|glycoside-hydrolase-family-31-protein
MPQYFGKLQKTEQPWSTIGSVESINKTDRTLHFNCGETSLNISILAPNLIRVRMSPTGEFKSRSHSITVPDEEWEITPFEVRETEEKIEIETAQITISVKRSRPAIECFDKSGKPFASDCDRSMGWRAGATAGWKRIEADEHFYGFGQRTGFLDKLSEVKTNWTIDALDYNSLSDEMYQAIPFYIALNPDRAYGIFFNTTFWSQFDIGAQQPGVLRMETRGPELDYYIIYGPEPAQILATYTQLTGRMPLPPKWALGYHQCRWSYESEDVVREVAQEFRDRAIPCDVIHLDIDYMRGYRVFTWSPKRFPDPAKLIADLKAAGFKVVTIVDPGVKYEPEGDYEVFDEGVENDYFVRTAEGRLFHGYVWPEKAVFPDFLRPEVRQWWGELHKNLTDMGVAGIWNDMNEPSIAERPFGDGHEHIWFPMDAPQGPESEGATHAETHNLYGLMMAKACSEGLQKVRSSSRASLTNERSFVLTRSGFAGIQRYSSVWMGDNQSLWDHLEMSLPMLCNMGLSGVAFVGCDIGGFAENATAELFARWMQVGMLYPLMRGHSAISTAQHEPWVFGDRTEKICREYMNLRYQLLPYIYTLFWEAATAGTPILRPLLYHFPRDRTTYHLYDQVLLGPSLMAAPVYRPGVEHRAVYLPEGTWYDWWTGECYQGPTHILACAPLERMPLYVRGGGIIAIAPVRQFVSEEPLESLKMRIWPGSGEWTLYEDDGHSFEHEKGVWATTNYKVYLEGEKIIVEIAAREGQFLISEREVIVEVVGVGEQRFTDDGTVRRLTFG
>NC_019729.1|WP_015176298.1|3039018_3039810_-|DUF3050-domain-containing-protein
MNHNQISETLDPYIQLLAETSTARKALLTHSIYQEVNDLKSLQGFMKSHVFAVWDFMTLLKTLQRRLTCIELPWVPPIDIHSARLVNEIVLAEETDEISPGYYSSHFHLYLAAMEEVGADSQPIRSFIAAIQQGFSANEALANLPIPEVTKTFVRTTLKAASGLNHEVAAVFLLGREDVIPKMFQQILTQLEDAQGIPCNSFRLYLERHTHLDEEQHAPMGQKLLRNICDNDSLKWKQAVNAANNALQARHCLWDGITQSIQQ
>NC_019729.1|WP_041622513.1|3040690_3041293_+|2OG-Fe(II)-oxygenase
MKYYSQHPNAFSIDYLNDLRGAILASPYLAINNLNRDFIGTKGFSVVFQRSEIAEVERRFPLFKPYLDQALQPECNAFYLNPLLLGEGSRVDPHIDRSLRSYCKTVEPPAAVSVLYVQVPPNLQGGELILRRNKQQVGQIKPQANSLIYFQGDLTHSVNAVKSTGTRLSLVCEQYSLSETELQDIPGFTVESRAVKAKIK
>NC_019729.1|WP_015176300.1|3041539_3042832_+|AAA-family-ATPase
MAKIEGFRVINYRSLRDITMGKLWNTQNAEELTPMTAVIGKNGVGKSTLFDTFGFLADCLKGGVEEACDARGRGGFERIRSQGQKGSVEFQIYYKEDRNARPITYDLAIDLDSSERPYVKKERLRQRRKNEKKGQPYSFLILNEGKGLAWKGEEGGQLLDEDRGEFDVNNLIENIQIGEISEESKEKEIVELEDKRKLGIATLGALKQHPRISAFRRFIEGWYLSYFTPDAARSLPLAGPQKHLNIHGDNLGNVVQFMEREHPKKFQSILQKISSKIPGVEKISTAKSPDGRLLLQFNDRGFQEPFYAQQMSDGTLKVFAYLLLLEDPSPPPFLCIEEPENGLYHKLLETLVREFREHATARRSGSQVFVTTHQPYFVDALNPEEVWVLEKGEDGFSQIRRASQDPLINNLVSEGLPLGGLWYSDYLDKR
>NC_019729.1|WP_015176301.1|3042836_3043496_+|hypothetical-protein
MHFEILVEDISGQTALEILIPKIISTQQHTFKIHYYKGIGHIPKGLKSASEANKRILLDQLPRLIQGYGKTFSQYPPDYPAVLIVICDLDDRCLSTFRRALLDIVDKCNPQPKTQFCIAIEEGEAWYLGDLAAVKKAYPQAKEAVLNSYTNDSICGTWEKLADAVFSGGVQNLSKQGGQAIGLEKSNWAKKIPPSMNVDKNLSPSFCYFRDKLRDLTSQ
>NC_019729.1|WP_015176302.1|3043855_3045130_+|alpha/beta-hydrolase
MIRKNKRKKLPLLAALLVPPFIPWLVSTIALFLSLWVIVPAPAMFLYPLAVGAPEISPWLVGINTIALLLNLLRRHQGKVYIILSICNLFALILGLLPLIQFPAANAAVATQMQAVLGENYLAAVPQADRAQLRPQPFILADAFRGIPIRDVRIDRAIGFANPDGVSLQLNLYRPMQIGKYPAIITLYGGAWQRGNPDYNEEFSRYMAAQGYCVVAIDYRHAPKYRFPAQIEDVQAALSYIKTHAADWGIDLDRIALMGRSAGAHLAMLTAYDSSVLPVRALVNYYGPNDLIRGYNDPPFPDAINVRAVLRAFLGGTPDELNELYRRASPINYIKPNLPPSLLVYAGRDHIVQAKFGRSLYERLRATGDSLRDSFASRAILLEIPWAEHAFDAVFNGPSNQLALYYTERFLAHALKSSDYQPVK
>NC_019729.1|WP_015176303.1|3045920_3048095_+|glutamine-synthetase-III
MSGNESRVQAISQIVNRKLMPARPPKRLEDMWATDVFTLSKMQESLPKSIFKSVKNTVQTGQKLDASVADVVAVAMKDWAISKGALYYAHVFYPLTNGTAEKHDGFISVQGDGSVISEFAGKVLVQGEPDGSSFPNGGIRSTAAARGYTAWDVTSPAYVMETDNGMTLCIPTVFISWTGEALDKKTPLLRSIAAMNKAATRVLKLLGNTEVAPVNSSCGSEQEYFLVDANFSNNRPDLLLAGRTLFGKAPAKGQQFDDHYFGAIPERVQVFMQEVEERMYRLGIPAKTRHNEVAPGQFEIAPVFEAANVASDHQQLTMTILRNTAKKHGFMCLLHEKPFAGINGSGKHVNWSVGNATQGNLLDPGDTPHSNIQFLVFCGAVIRGVHKYGPLLRAVVATASNDHRLGANEAPPAIISVYLGSQLEDIFAQISRGEVKDSKGRGIMNLGVETLPTFMKDAGDRNRTSPFAFTGNRFEFRAVGSGQSVSGPLVAMNTILADSLDWIANKLESGLANGTELNAAIQTILKEVMDEHGAVVFGGDGYSEEWHKMAVEERGLANLRTTADALPVLKEGYIEDLFEKTGVLTPVELESRYDVYAEQYLLAIEVEAKLVISMAKTIIYPAALRYLAELSGTISKLKEIGIELEKESAEKVAVLVKSMMDTASKLSAALSKHDFASTEDHMQYASQTIRPLMDEVRKYADALEGEVADDLWPLPTYQEMLFVK

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Crispr_ID: NC_019729_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_29

3071965-3072033

Orphan

Consensus_repeat	Method
CCCTTGCTAAGGGGGGGCTTTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_29

>merge|NC_019729|29|3071965-3072033|CRISPRCasFinder
CCCTTGCTAAGGGGGGGCTTTTGAATACGGAACCCCCCCAACCCCCCCTTGCTAAGGGGGGGCTTTTGA

>NC_019729|29|28|3071965-3072033|CRISPRCasFinder
CCCTTGCTAAGGGGGGGCTTTTGA	ATACGGAACCCCCCCAACCCC
CCCTTGCTAAGGGGGGGCTTTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176327.1\|3080624_3081638_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NC_019729.1\|WP_015176313.1\|3061929_3062607_-\|TIGR02117-family-protein	unknown	unknown	gnl\|CDD\|378218
NC_019729.1\|WP_041622515.1\|3067013_3067466_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380392
NC_019729.1\|WP_015176329.1\|3082701_3083703_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
NC_019729.1\|WP_006632635.1\|3069514_3069763_+\|Ycf34-family-protein	unknown	unknown	gnl\|CDD\|371208
NC_019729.1\|WP_015176320.1\|3069897_3071610_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_150111536.1\|3076452_3076743_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176324.1\|3077461_3078283_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NC_019729.1\|WP_015176319.1\|3068158_3069406_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NC_019729.1\|WP_015176316.1\|3066122_3066893_+\|cysteine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238245
NC_019729.1\|WP_015176330.1\|3083781_3085587_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|213748
NC_019729.1\|WP_041622514.1\|3065632_3065911_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176318.1\|3067587_3067935_+\|DUF952-domain-containing-protein	unknown	unknown	gnl\|CDD\|226033
NC_019729.1\|WP_041623090.1\|3081721_3082480_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_019729.1\|WP_015176326.1\|3078996_3080430_-\|carotenoid-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|226196
NC_019729.1\|WP_041623088.1\|3062621_3063824_-\|glycoside-hydrolase-family-10-protein	unknown	unknown	gnl\|CDD\|224563
NC_019729.1\|WP_150111663.1\|3064197_3065337_-\|serpin-family-protein	unknown	unknown	gnl\|CDD\|381054
NC_019729.1\|WP_041622516.1\|3072644_3072908_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223560
NC_019729.1\|WP_015176323.1\|3076974_3077349_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176322.1\|3073058_3076478_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176327.1\|3080624_3081638_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	8.04214e-115
NC_019729.1\|WP_015176313.1\|3061929_3062607_-\|TIGR02117-family-protein	gnl\|CDD\|378218	pfam09601, DUF2459, Protein of unknown function (DUF2459). This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.	9.59395e-82
NC_019729.1\|WP_041622515.1\|3067013_3067466_+\|cupin-domain-containing-protein	gnl\|CDD\|380392	cd06987, cupin_MAE_RS03005, Microcystis aeruginosa MAE_RS03005 and related proteins, cupin domain. This family includes bacterial and some eukaryotic proteins homologous to MAE_RS03005, a Microcystis aeruginosa protein of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.30578e-76
NC_019729.1\|WP_015176329.1\|3082701_3083703_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	2.4933e-71
NC_019729.1\|WP_006632635.1\|3069514_3069763_+\|Ycf34-family-protein	gnl\|CDD\|371208	pfam10718, Ycf34, Hypothetical chloroplast protein Ycf34. This family is of proteins annotated as hypothetical chloroplast protein YCF34. The function is not known.	2.22236e-46
NC_019729.1\|WP_015176320.1\|3069897_3071610_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.36928e-61
NC_019729.1\|WP_015176324.1\|3077461_3078283_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.48707e-68
NC_019729.1\|WP_015176319.1\|3068158_3069406_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	2.23508e-53
NC_019729.1\|WP_015176316.1\|3066122_3066893_+\|cysteine-hydrolase-family-protein	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.16488e-43
NC_019729.1\|WP_015176330.1\|3083781_3085587_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|213748	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I. This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport].	0
NC_019729.1\|WP_015176318.1\|3067587_3067935_+\|DUF952-domain-containing-protein	gnl\|CDD\|226033	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown].	6.85021e-41
NC_019729.1\|WP_041623090.1\|3081721_3082480_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.73752e-21
NC_019729.1\|WP_015176326.1\|3078996_3080430_-\|carotenoid-oxygenase-family-protein	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_019729.1\|WP_041623088.1\|3062621_3063824_-\|glycoside-hydrolase-family-10-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	5.59725e-121
NC_019729.1\|WP_150111663.1\|3064197_3065337_-\|serpin-family-protein	gnl\|CDD\|381054	cd19588, serpin_miropin-like, serpin miropin and similar proteins. Miropin, the serpin from Tannerella forsythia, is thought to contribute to the virulence of periodontal pathogens by inhibiting neutrophil serine proteases. Miropin broadly inhibits serine endopeptidases (SEPs) including trypsin, neutrophil elastase, pancreatic elastase, subtilisin, and cathepsin G and cysteine endopeptidases (CEPs) including papain, calpain-like peptidase Tpr, and gingipain K through various reactive-site bonds. This is achieved by offering several target bonds of the RCL for cleavage within a bait region, instead of a single RSB as found in canonical serpins. In addition, promiscuous inhibition is facilitated by the capacity to insert strands deviating from the canonical length into the central sheet A, while keeping the prey peptidase bound and inactivated. The structural adaptation of miropin to provide a relaxed inhibitory specificity, which allows for formation of inhibitory complexes using different sites, is unique among serpins. SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.	0
NC_019729.1\|WP_041622516.1\|3072644_3072908_-\|hypothetical-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	0.000641817
NC_019729.1\|WP_015176322.1\|3073058_3076478_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.71577e-62

>NC_019729.1|WP_015176320.1|3069897_3071610_+|serine/threonine-protein-kinase
MCYCLNPTCQNPHNPGDAEFCQSCGSKLLLTIDAETPSASRYRTVKPIGQGGFGRTFLAVDETKPLIFSQCVIKQFFPQNTAAEKAAQLFHQEAAQLETLGKHPQIPELIAHFEQDGRQYLVQEFIDGKNLARELEQKGAFTETQIRQILNDLLPVLHFVHKSKVIHRDIKPENIIRRRLSPTPLPALETSYQPSPFQKDIVLVDFGAAKKVTATGLPQTGTIIGSAAYTAPEQLMGKAVFASDIYSLGVTCIHLLTEIPPFDLFDSTEDSWAWRNYLKTAVSDDFGRILDTMLQSATNRRYSSASAVIRHLNPKPVYLDAQPVLDAPETPAERVVTPAPGVSLFTRQQQAEIQQALQEDLAPYNVTIQVSQAKQQLTIVINRTEDNPVYYPHLSQIIATRLTDLQLNKVAAVKLLGRVNNSRRPEWKQILQIDPKIQLRNKLVRLQHNQLLKKIAPVATQEFWLPKLKTQDFWIDALMFALVWFIFGSQIVIFNSWFALIVSSGFMAVKHQVSQNKEFANKNLFASLVVLFLMTGGMGNSRILNTGIFGILLGCLVVALPLFFVKENYQ
>NC_019729.1|WP_006632635.1|3069514_3069763_+|Ycf34-family-protein
MCICINCHYVDRCFTYHAVEEQHEQLHLTETPDFDPVEPTINVNIRPRQDEIEMEWDVVGCQSFKQETGKWAKLRPGELVPT
>NC_019729.1|WP_015176319.1|3068158_3069406_-|CCA-tRNA-nucleotidyltransferase
MPINLPSSLSPDSWPFDLELLTPPAYLVGGAVRDALLGRRSHYFDLDFVMLTRAVKTARRIADRTKGGFVLLDAERQIARVVFAGGTVDLAQAEGGSLEGDLRRRDFRINAIACNPFTGEIIDPLDGQTDLRLGLLRMISRSNLEDDPLRLLRAYRQAAQLDFAIEAETQSAIRELAPLLSRVAVERVRTELGYLLSNPEGVPWICRGCEDGLFSIWFESAIDRFDILTKIDASADKLAAIYPDLGREFSRSIRDTIKTPLLAVAKLAVLADSDPTIAETQLQRLKYSNAEIKSAIELLKYLPKLQAQPIAEMSLREQYFLFRDLGIVFPVLAVLAVAAGLAVEEISLLINRYLDADDIVAHPTQLVSGNDLMESLNLPRSPRIGQLLMDIQLARVEGRIASREDALAFAKELVN
>NC_019729.1|WP_015176318.1|3067587_3067935_+|DUF952-domain-containing-protein
MSVIFHIAKSQQWEEAKHLQSYRGDTLDSEGFIHCSTLPQVTRSANKFFVGQTGLLLLWIDSEKVQAEVKYESAAGDFYPHIYGPLNVDAVLKVLEFEAGADGKFELPEELRDVA
>NC_019729.1|WP_041622515.1|3067013_3067466_+|cupin-domain-containing-protein
MTNQCMIPVIKSPQDYQAFRISPGDTNRLAIVFDPVTANVSLTVCVEIFDGGGKTPPNRHQFAVEMFFVLKGRGQATCDGKTVSIKPGDSLLVPPTGTHVIENTGSERLYTLCIMVPNEDFVELIRSGTPVELDEEDMRVLGRSDVLVSC
>NC_019729.1|WP_015176316.1|3066122_3066893_+|cysteine-hydrolase-family-protein
MNPDSLRTLGVPPNAWKVDTKIADITRSPIAPQPVTLETETKTLRLDLAKAAMLVIDMQNDFCHPDGWLAHIGVDVTPARTPINPLTNLLPKLRSHAMPIIWINWGNRPDLLNISAASRHVYNPTGDGVGLGDPLPKNNAPVLMAGSWAAQVVDELKPKPEDICVDKYRMSGFWDTPLDSILRNLGRTTLFFGGVNADQCVMATLQDANFLGYDCILVKDCTATTSPEYCWQATLYNVKQCFGFLSDSQAMLEAIK
>NC_019729.1|WP_041622514.1|3065632_3065911_-|hypothetical-protein
MSFTIQNALLPVERGDETADVPVADSCISAIGELVFLAPELPFVAERKVQTIDVDDLRRELFDRSEWNSKRQSQTVSEIEAHYHKVMKLQGY
>NC_019729.1|WP_150111663.1|3064197_3065337_-|serpin-family-protein
MTPPNNQIDLDARLVAANTKFGFNLFNTLTKQQPNQNIFISPTSVALALSMTYNGVSGETKQEMTKVLEFTGMTPQEINAANQGLQNSLQKVEPNIQVLIANSLWAQQGFSLKPEFLQTNQKYYNANITELNFSNPQALSIINNWVSQKTQGKIDKIVDKISPDGVLFLINAIYFKGNWKTPFDKSQTANKTFSLTDGSSKQHPMMSQKGNFWYYETDTFQAVSLPYGKQGSLSMYIFLPKPNSNLETFLQQLTTENWNEWMQEFTHINGTIEIPRFKIEYEVELENTLTTLGMAGIFDISKADFSPMTDDSVAVDSVKHKTFVEVNEEGTEAAAVTSIQLTRSGGSPFQMNVNRPFFCAIRDNTTGTILFMGTIVDPQ
>NC_019729.1|WP_041623088.1|3062621_3063824_-|glycoside-hydrolase-family-10-protein
MIKLHKWQRILALIVVFTIALTSSAILSPRLLAQTPPKTPTTELRGVWLTNIDSDVIFSRNNIIDAVNRLDKLNFNTIYPTVWQGGYTLYPSAAAQRVFGQSIDPSPGLKDRDILKEIIAQSRQKGISVIPWFEFGFMAPAESELATLHPDWLAHRRDGSTIWKEGEHERVWLNPFHPEVQQFILDLILEIVDNYDIDGIQFDDHFGLPVEFGYEPLTMLMYQEQIKSPPSDDPRETFWVRWRADKINDFMGRVSRAIKSRKEKCIVSLSPNPFHFSLPAHLQDWFSWERRGYIQEIVLQVYRSDIKRFSAELEREEVKLAKLNIPTAIGILTGLKNNSVPLKQIQEQVQEVRKRDFAGVSFFFYESLSNWANETPEQRNYALQEFFPTKMQRPPSEARI
>NC_019729.1|WP_015176313.1|3061929_3062607_-|TIGR02117-family-protein
MRKSIQRLGIVILSLTACLTIGYLTPRKWGNYSQADCTISLYISNEGIHTEIIVPVKNEYFDWNQFLPLTEIGRDAASDYKYLSFGWGDRAFMLETPTSESINPVTAFNALFLPTPSTVHVESYRVVPRNIETKCVKISGANYLRLVNFLKNSFQLDAAGKKMKISYSYGNSDSFYEAKGSYSILRTCNDWTAEALQKADVNTPLWSTLSSAIMFHLNSGCECQK
>NC_019729.1|WP_041622516.1|3072644_3072908_-|hypothetical-protein
MNNIPTTPDPVTSHWDCPECGGTGTLSPEICPVCLGAKYIDLATITNWMLDFMESRGCDRAEIDRLRTENPDPLTLTFCLEVCIALK
>NC_019729.1|WP_015176322.1|3073058_3076478_+|tetratricopeptide-repeat-protein
MFDRTQWVLAGMSIALSLQLSQPVAAAVPVGKVLQTAQTNSSEAAQKAFKEGAQLYQQGTVEAKRSAIVKLEEALKLYREAGDNRGQALSLLGLGSVCSDLGEKQKALEYYSQSLTLFRALGDRSLEATILNNIGLVYSELGEKQKALEYYSQSLPLFRALSNRGGEAGTLNNIGKVYNDLGEKQKALEYYSQSLPLFRARGDRGGEASTLNNIGSVCDDLGEKQKALEYYSQSLPLFRARGDRSGEAVTLANIGLVYSALGEKQKALEYYSQSLPLSRATGDRGGEATTLNNIGSVYSALGEKQKALEYYSQSLPLRRATGDRAGEATTLSNIGSVYSALGEKQKALEYYSQSLPLRRATGDRAGEATTLSNIGTVYSELGEKQKALEYYSQSLPLRRATGDRAGEATTLNGIGLVYSELGEKQKALEYYSQSLPLSRATGDRAGEADTLNNIGSVYDDLGEKQKALEYYSQSLPLRRATGDRAGEATTLNNIGNVYDDLGEKQKALEYYSQSLPLSRATGDRAGEATTLNNIGALYSELREQQKALEYYSQSLPLSRAVGNRSGEAATLFQIAFAKRDQNNLTEALTDIESSLKIIENLRTKIASPELRTSYFSTVQGYYEFYIDLLMQLHEQQPNSNYNIKALEASERSRARSLLELLFESNANIREGISPDLLQQEKSLQQQLDAIEKQRIQELSRSNPNQTKIDEIDSRRLALLQQYQQIQAQIRSASPRYAALTQPQPLTLPEIQKQILDENTILLQYSLGKYRSYLWVVTSTGLTSYELPSQVDIETAARNFRDAITSPIQRDIPQKVAEASANLSQLILQPAAALLGNKRLLIVPDGVLHYTPFPALTLPQTRGQNTNVPLIASHEIITLPSASTLAILRQNYGDRKPPGRTLAILADPVFSPDDERIKGKITQATAEKLEANNLGLNRSLRASNRGWPPDRLPFTRQEAQTISSLFPSASSRQIFDFDASRPTATDGQLANYQIVHFATHGLANSKNPELSGILMSMVDDKGNLVNGFLRLTDIFNLKLAANLVVLSACQSGMGQNVKGEGMVGLTRGFMYAGAQRVAVSLWSVDDEGTAVLMQKFYQKMLQQKLAPAAALRAAQMEMMRIEKWKSPYYWAAFTLQGEWK
>NC_019729.1|WP_150111536.1|3076452_3076743_-|hypothetical-protein
MSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDYRFNVKLTPMGIAVSLQGLCTYLPAKVLYIISTRPEG
>NC_019729.1|WP_015176323.1|3076974_3077349_+|hypothetical-protein
MRQGIHSLADYRVGGVNQQPQKFFFSVLFQRTFAMRQGIHSLADYRVGGVNQQPQKFFFSVLFQRTLAMRQGINSLADYRVGGVNQQPQKFFFSVLFQRTLAMRQGFQSLADYRVGGRTAGWAG
>NC_019729.1|WP_015176324.1|3077461_3078283_-|SDR-family-NAD(P)-dependent-oxidoreductase
MQLQGKTALVTGASRGIGRSIALELARQGVKRLLIVARNRKQLIELAEEIDVLGTEVVPLALDLTQSVAVNIAIAQAWRDCGPIHLLVNCAGVAHQASFLRSPLPLIESEIALNLLGTYTITRLIARRMAAQKEGTIVNVSSLMGKIAAPTMATYSATKFAILGFTQALRSELSQYNVRVTALLPSLTDTDMVRDLEQFRWVVPTTPEKVALALVAGLHKDAPEILVGYQSHLAVWCHRIAPWLLDFVLRMATPELRDKSRGRKLREALASGR
>NC_019729.1|WP_015176326.1|3078996_3080430_-|carotenoid-oxygenase-family-protein
MKTDTKISAKKSWAQALARPAAEFPLTQLSVKSGKIPDGLRGTLYRNGPARLERGGMNAGHWFDGDGAILAVHFTDVGATAVYRYVQTAGYLAEEKADKFLYSNYGMTAPGPVWLRWTKSVKNAANTSVLALPDRLLALWEGGLPHSLDLQTLETQGTDDLGSLQSGSSYSAHCKRDPITGNIFNFGITHGASTKLNLYKSAPTGKIVQHATVALDGIPMIHDFVLAGKYLIFFVPPVRVKFLPVLAGISSFGESFEWKPELGTQILVIDSETLSLVSRGETDSWFQWHFANGFVKEDGSVAVDFVRFADFQTNQRLKEVPTGETSTDAEGTLWRVHLNPQTGKVTAAEELLDLPCEFPIVPAAEIGQDARYIYLAMYRPEVDIVPERYGAIARFDTQSRHLTIADCGENRYPAEPIYVPDISSEKGWIVTVIYDGNSDSSEVWIFDSDGLSREPVCQLELPGVIPLGFHGTWKSAV
>NC_019729.1|WP_015176327.1|3080624_3081638_+|LD-carboxypeptidase
MTLRRRALIGTFGLTAIGTQLLPIAQTNLSPKSAIEPRRLQVGDTVALINPAAFNYEKEVQPFFKVLDNLGLKVKLGEHFYDRYGYLAGKDADRAADVNAAFADDSVRAIFTGMGGWGCARILPLLDYNIIRNNPKIIMGFSDITALLLAIYAKTNIVTFHGPLGASSWSPFTVNYVKKVLFEGGAVTMQNSQSVQVETIGRGTARGKLIGGNLSVIAAMVGSAYLPEWENSILFVEEVGEEVYRIDRMLTQLKLAGILDKISGFIFGQCTKCEAEKPQESLTLPQVLSDHIRPLKIPAWYGSMVGHIREQFTLPIGKQVEIDANSGTIRLLESAVS
>NC_019729.1|WP_041623090.1|3081721_3082480_+|methyltransferase-domain-containing-protein
MKKTAQFLKPLTVIILTILCLLPLNACAAASKTANSDSIYQQRTVHNPDGTGKFYMGREIAQVMGYQGAGWLERPSRGMEEKSARLVNNLDLKPTDIVADIGAGTGYFSFRIAPLVPQGKVLAVDVQPEMINFIKLNKQEKNIANVEPVLGSIDNPNLPENSVDLVVMVDAYHEFAYPREMMQGIVKALKPGGRTVSIEYRGENPMIPIKGLHKMTQKQVKKEMAAVGLVWKETKDMLPQQHLMVFEKKSQI
>NC_019729.1|WP_015176329.1|3082701_3083703_+|cytochrome-c-oxidase-subunit-II
MNIPSSILTMLAGIGVTLISLWYGQNHGLLPIAASDEASDIDALFNTMMTISTGLFIMVQGVLIVAAIKYRRRPGDNTDGPPWHDNFPLEILWTAVPAVIILGIGVYSFEIYNSMGGLDPMGNHDHGTMQAHSKMRGSAIAATLSDTPQNAPQIPSQKFVALGVGASPENEDKPADLVVNVMGLQYAWIFSYPESGVSSGELHIPANRDVQLNISAQDVLHAFWLPEFRLKQDAIPGRPSELRFTATKTGEYRVVCAELCGAYHGAMKALAVVHTPEEFDTWLQSQQVASSQNLEQAVAVNPGELSDGEFLAPYVREIKINSETLEQLHPTHH
>NC_019729.1|WP_015176330.1|3083781_3085587_+|cytochrome-c-oxidase-subunit-I
MTQAQFQETANTEARGTAPADRHWRDYFTFNTDHKVIGIQYLVTTFIFYLIGGVMATLVRTELATPDADFVTPELYNSLFTVHATVMIFLWIVPAGAGFANFLIPLMIGAKDMAFPRLNAVAFWLIPVGGVLLLSSFLVGAPQAGWTSYPPLSLVTAQAGEEIWILSVLILGTSSILGAVNFAVTIFTMRVPSMGLNEMPLFCWAMIATSALTLIATPVLAAALILLSFDLLAGTAFFNPTGNGDPIVYQHLFWFYSHPAVYIMIMPFFGVISEVLPVHSRKPIFGYLAIAYSSLAISFLGLIVWAHHMFTSGTPGWLRMFFMITTMIIAVPTGIKIFSWLATIWGGKLRLVSAMLFGMGFISTFVLGGITGIMVASVPFDIHVHDTYFVVAHLHYVLFGGSVFGIYAAFYHWFPKMTGRMINEFWGRVHFVLTYVGFTVTFLPMHALGMQGMPRRVAMYDPKFTTINVICTVGAYMLAVSTIPFIINVIWSWMYGPKAGDNPWQALSLEWMTTSPPPIENFEGVPVLATGPYDYGMEKIQHTGERLRLKLRENATRNAQKTGIPIAEAQASTFFGGTATLVAPESEINVDSPADESQDGE

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Crispr_ID: NC_019729_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_30

3078640-3078734

Orphan

Consensus_repeat	Method
GCCTGTGTAGCCGCGAATTTATTCGCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_30

>merge|NC_019729|30|3078640-3078734|CRISPRCasFinder
GCCTGTGTAGCCGCGAATTTATTCGCCGGGGATTGGTTTTCTTCAGTCCGCAGAGGCGGACGCAAGCCTGTGTAGCCGCGAATTTATTCGCCGGG

>NC_019729|30|29|3078640-3078734|CRISPRCasFinder
GCCTGTGTAGCCGCGAATTTATTCGCCGGG	GATTGGTTTTCTTCAGTCCGCAGAGGCGGACGCAA
GCCTGTGTAGCCGCGAATTTATTCGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176327.1\|3080624_3081638_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NC_019729.1\|WP_015176334.1\|3088201_3088501_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NC_019729.1\|WP_015176333.1\|3086954_3088187_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176331.1\|3085716_3086340_+\|heme-copper-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|224758
NC_019729.1\|WP_015176329.1\|3082701_3083703_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
NC_019729.1\|WP_006632635.1\|3069514_3069763_+\|Ycf34-family-protein	unknown	unknown	gnl\|CDD\|371208
NC_019729.1\|WP_015176320.1\|3069897_3071610_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015176324.1\|3077461_3078283_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NC_019729.1\|WP_015176321.1\|3071612_3072365_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_019729.1\|WP_015176319.1\|3068158_3069406_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NC_019729.1\|WP_015176335.1\|3088778_3089753_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|182672
NC_019729.1\|WP_150111536.1\|3076452_3076743_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176330.1\|3083781_3085587_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|213748
NC_019729.1\|WP_015176318.1\|3067587_3067935_+\|DUF952-domain-containing-protein	unknown	unknown	gnl\|CDD\|226033
NC_019729.1\|WP_041623090.1\|3081721_3082480_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_019729.1\|WP_015176326.1\|3078996_3080430_-\|carotenoid-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|226196
NC_019729.1\|WP_015176323.1\|3076974_3077349_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622516.1\|3072644_3072908_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223560
NC_019729.1\|WP_041623091.1\|3086501_3086789_+\|HNH-endonuclease	unknown	unknown	unknown
NC_019729.1\|WP_015176322.1\|3073058_3076478_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176327.1\|3080624_3081638_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	8.04214e-115
NC_019729.1\|WP_015176334.1\|3088201_3088501_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	3.92335e-16
NC_019729.1\|WP_015176331.1\|3085716_3086340_+\|heme-copper-oxidase-subunit-III	gnl\|CDD\|224758	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion].	7.74262e-65
NC_019729.1\|WP_015176329.1\|3082701_3083703_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	2.4933e-71
NC_019729.1\|WP_006632635.1\|3069514_3069763_+\|Ycf34-family-protein	gnl\|CDD\|371208	pfam10718, Ycf34, Hypothetical chloroplast protein Ycf34. This family is of proteins annotated as hypothetical chloroplast protein YCF34. The function is not known.	2.22236e-46
NC_019729.1\|WP_015176320.1\|3069897_3071610_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.36928e-61
NC_019729.1\|WP_041623090.1\|3081721_3082480_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.73752e-21
NC_019729.1\|WP_015176321.1\|3071612_3072365_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	6.95001e-32
NC_019729.1\|WP_015176319.1\|3068158_3069406_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	2.23508e-53
NC_019729.1\|WP_015176335.1\|3088778_3089753_-\|cysteine-synthase-A	gnl\|CDD\|182672	PRK10717, PRK10717, cysteine synthase A; Provisional.	0
NC_019729.1\|WP_015176330.1\|3083781_3085587_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|213748	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I. This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport].	0
NC_019729.1\|WP_015176324.1\|3077461_3078283_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.48707e-68
NC_019729.1\|WP_015176318.1\|3067587_3067935_+\|DUF952-domain-containing-protein	gnl\|CDD\|226033	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown].	6.85021e-41
NC_019729.1\|WP_015176326.1\|3078996_3080430_-\|carotenoid-oxygenase-family-protein	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_019729.1\|WP_041622516.1\|3072644_3072908_-\|hypothetical-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	0.000641817
NC_019729.1\|WP_015176322.1\|3073058_3076478_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.71577e-62

>NC_019729.1|WP_015176324.1|3077461_3078283_-|SDR-family-NAD(P)-dependent-oxidoreductase
MQLQGKTALVTGASRGIGRSIALELARQGVKRLLIVARNRKQLIELAEEIDVLGTEVVPLALDLTQSVAVNIAIAQAWRDCGPIHLLVNCAGVAHQASFLRSPLPLIESEIALNLLGTYTITRLIARRMAAQKEGTIVNVSSLMGKIAAPTMATYSATKFAILGFTQALRSELSQYNVRVTALLPSLTDTDMVRDLEQFRWVVPTTPEKVALALVAGLHKDAPEILVGYQSHLAVWCHRIAPWLLDFVLRMATPELRDKSRGRKLREALASGR
>NC_019729.1|WP_015176323.1|3076974_3077349_+|hypothetical-protein
MRQGIHSLADYRVGGVNQQPQKFFFSVLFQRTFAMRQGIHSLADYRVGGVNQQPQKFFFSVLFQRTLAMRQGINSLADYRVGGVNQQPQKFFFSVLFQRTLAMRQGFQSLADYRVGGRTAGWAG
>NC_019729.1|WP_150111536.1|3076452_3076743_-|hypothetical-protein
MSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDCRIVGLSDYRFNVKLTPMGIAVSLQGLCTYLPAKVLYIISTRPEG
>NC_019729.1|WP_015176322.1|3073058_3076478_+|tetratricopeptide-repeat-protein
MFDRTQWVLAGMSIALSLQLSQPVAAAVPVGKVLQTAQTNSSEAAQKAFKEGAQLYQQGTVEAKRSAIVKLEEALKLYREAGDNRGQALSLLGLGSVCSDLGEKQKALEYYSQSLTLFRALGDRSLEATILNNIGLVYSELGEKQKALEYYSQSLPLFRALSNRGGEAGTLNNIGKVYNDLGEKQKALEYYSQSLPLFRARGDRGGEASTLNNIGSVCDDLGEKQKALEYYSQSLPLFRARGDRSGEAVTLANIGLVYSALGEKQKALEYYSQSLPLSRATGDRGGEATTLNNIGSVYSALGEKQKALEYYSQSLPLRRATGDRAGEATTLSNIGSVYSALGEKQKALEYYSQSLPLRRATGDRAGEATTLSNIGTVYSELGEKQKALEYYSQSLPLRRATGDRAGEATTLNGIGLVYSELGEKQKALEYYSQSLPLSRATGDRAGEADTLNNIGSVYDDLGEKQKALEYYSQSLPLRRATGDRAGEATTLNNIGNVYDDLGEKQKALEYYSQSLPLSRATGDRAGEATTLNNIGALYSELREQQKALEYYSQSLPLSRAVGNRSGEAATLFQIAFAKRDQNNLTEALTDIESSLKIIENLRTKIASPELRTSYFSTVQGYYEFYIDLLMQLHEQQPNSNYNIKALEASERSRARSLLELLFESNANIREGISPDLLQQEKSLQQQLDAIEKQRIQELSRSNPNQTKIDEIDSRRLALLQQYQQIQAQIRSASPRYAALTQPQPLTLPEIQKQILDENTILLQYSLGKYRSYLWVVTSTGLTSYELPSQVDIETAARNFRDAITSPIQRDIPQKVAEASANLSQLILQPAAALLGNKRLLIVPDGVLHYTPFPALTLPQTRGQNTNVPLIASHEIITLPSASTLAILRQNYGDRKPPGRTLAILADPVFSPDDERIKGKITQATAEKLEANNLGLNRSLRASNRGWPPDRLPFTRQEAQTISSLFPSASSRQIFDFDASRPTATDGQLANYQIVHFATHGLANSKNPELSGILMSMVDDKGNLVNGFLRLTDIFNLKLAANLVVLSACQSGMGQNVKGEGMVGLTRGFMYAGAQRVAVSLWSVDDEGTAVLMQKFYQKMLQQKLAPAAALRAAQMEMMRIEKWKSPYYWAAFTLQGEWK
>NC_019729.1|WP_041622516.1|3072644_3072908_-|hypothetical-protein
MNNIPTTPDPVTSHWDCPECGGTGTLSPEICPVCLGAKYIDLATITNWMLDFMESRGCDRAEIDRLRTENPDPLTLTFCLEVCIALK
>NC_019729.1|WP_015176321.1|3071612_3072365_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNSNPQDGTSVKKYGLALHTASRELGLAISNFAGDSRCQTWNLDRDLATHLHQYLVEFIGPQTWADLAFIAVAKGPGGFTGTRMGMVTARTLAQQLDIPVFAVSTLAAVAWAAPPQPPLAKGGLLNTEPPQPPLAKGGLLSAEPSLAKGGLLSVALQMPAQRGQLFGAVYSVNKDSGLTELFTDTVMTAESWQEKLESWENSYQLIEVGSELGWSVSSVLELAYLEWKQGSRPDWSDALPFYGQHPVKGH
>NC_019729.1|WP_015176320.1|3069897_3071610_+|serine/threonine-protein-kinase
MCYCLNPTCQNPHNPGDAEFCQSCGSKLLLTIDAETPSASRYRTVKPIGQGGFGRTFLAVDETKPLIFSQCVIKQFFPQNTAAEKAAQLFHQEAAQLETLGKHPQIPELIAHFEQDGRQYLVQEFIDGKNLARELEQKGAFTETQIRQILNDLLPVLHFVHKSKVIHRDIKPENIIRRRLSPTPLPALETSYQPSPFQKDIVLVDFGAAKKVTATGLPQTGTIIGSAAYTAPEQLMGKAVFASDIYSLGVTCIHLLTEIPPFDLFDSTEDSWAWRNYLKTAVSDDFGRILDTMLQSATNRRYSSASAVIRHLNPKPVYLDAQPVLDAPETPAERVVTPAPGVSLFTRQQQAEIQQALQEDLAPYNVTIQVSQAKQQLTIVINRTEDNPVYYPHLSQIIATRLTDLQLNKVAAVKLLGRVNNSRRPEWKQILQIDPKIQLRNKLVRLQHNQLLKKIAPVATQEFWLPKLKTQDFWIDALMFALVWFIFGSQIVIFNSWFALIVSSGFMAVKHQVSQNKEFANKNLFASLVVLFLMTGGMGNSRILNTGIFGILLGCLVVALPLFFVKENYQ
>NC_019729.1|WP_006632635.1|3069514_3069763_+|Ycf34-family-protein
MCICINCHYVDRCFTYHAVEEQHEQLHLTETPDFDPVEPTINVNIRPRQDEIEMEWDVVGCQSFKQETGKWAKLRPGELVPT
>NC_019729.1|WP_015176319.1|3068158_3069406_-|CCA-tRNA-nucleotidyltransferase
MPINLPSSLSPDSWPFDLELLTPPAYLVGGAVRDALLGRRSHYFDLDFVMLTRAVKTARRIADRTKGGFVLLDAERQIARVVFAGGTVDLAQAEGGSLEGDLRRRDFRINAIACNPFTGEIIDPLDGQTDLRLGLLRMISRSNLEDDPLRLLRAYRQAAQLDFAIEAETQSAIRELAPLLSRVAVERVRTELGYLLSNPEGVPWICRGCEDGLFSIWFESAIDRFDILTKIDASADKLAAIYPDLGREFSRSIRDTIKTPLLAVAKLAVLADSDPTIAETQLQRLKYSNAEIKSAIELLKYLPKLQAQPIAEMSLREQYFLFRDLGIVFPVLAVLAVAAGLAVEEISLLINRYLDADDIVAHPTQLVSGNDLMESLNLPRSPRIGQLLMDIQLARVEGRIASREDALAFAKELVN
>NC_019729.1|WP_015176318.1|3067587_3067935_+|DUF952-domain-containing-protein
MSVIFHIAKSQQWEEAKHLQSYRGDTLDSEGFIHCSTLPQVTRSANKFFVGQTGLLLLWIDSEKVQAEVKYESAAGDFYPHIYGPLNVDAVLKVLEFEAGADGKFELPEELRDVA
>NC_019729.1|WP_015176326.1|3078996_3080430_-|carotenoid-oxygenase-family-protein
MKTDTKISAKKSWAQALARPAAEFPLTQLSVKSGKIPDGLRGTLYRNGPARLERGGMNAGHWFDGDGAILAVHFTDVGATAVYRYVQTAGYLAEEKADKFLYSNYGMTAPGPVWLRWTKSVKNAANTSVLALPDRLLALWEGGLPHSLDLQTLETQGTDDLGSLQSGSSYSAHCKRDPITGNIFNFGITHGASTKLNLYKSAPTGKIVQHATVALDGIPMIHDFVLAGKYLIFFVPPVRVKFLPVLAGISSFGESFEWKPELGTQILVIDSETLSLVSRGETDSWFQWHFANGFVKEDGSVAVDFVRFADFQTNQRLKEVPTGETSTDAEGTLWRVHLNPQTGKVTAAEELLDLPCEFPIVPAAEIGQDARYIYLAMYRPEVDIVPERYGAIARFDTQSRHLTIADCGENRYPAEPIYVPDISSEKGWIVTVIYDGNSDSSEVWIFDSDGLSREPVCQLELPGVIPLGFHGTWKSAV
>NC_019729.1|WP_015176327.1|3080624_3081638_+|LD-carboxypeptidase
MTLRRRALIGTFGLTAIGTQLLPIAQTNLSPKSAIEPRRLQVGDTVALINPAAFNYEKEVQPFFKVLDNLGLKVKLGEHFYDRYGYLAGKDADRAADVNAAFADDSVRAIFTGMGGWGCARILPLLDYNIIRNNPKIIMGFSDITALLLAIYAKTNIVTFHGPLGASSWSPFTVNYVKKVLFEGGAVTMQNSQSVQVETIGRGTARGKLIGGNLSVIAAMVGSAYLPEWENSILFVEEVGEEVYRIDRMLTQLKLAGILDKISGFIFGQCTKCEAEKPQESLTLPQVLSDHIRPLKIPAWYGSMVGHIREQFTLPIGKQVEIDANSGTIRLLESAVS
>NC_019729.1|WP_041623090.1|3081721_3082480_+|methyltransferase-domain-containing-protein
MKKTAQFLKPLTVIILTILCLLPLNACAAASKTANSDSIYQQRTVHNPDGTGKFYMGREIAQVMGYQGAGWLERPSRGMEEKSARLVNNLDLKPTDIVADIGAGTGYFSFRIAPLVPQGKVLAVDVQPEMINFIKLNKQEKNIANVEPVLGSIDNPNLPENSVDLVVMVDAYHEFAYPREMMQGIVKALKPGGRTVSIEYRGENPMIPIKGLHKMTQKQVKKEMAAVGLVWKETKDMLPQQHLMVFEKKSQI
>NC_019729.1|WP_015176329.1|3082701_3083703_+|cytochrome-c-oxidase-subunit-II
MNIPSSILTMLAGIGVTLISLWYGQNHGLLPIAASDEASDIDALFNTMMTISTGLFIMVQGVLIVAAIKYRRRPGDNTDGPPWHDNFPLEILWTAVPAVIILGIGVYSFEIYNSMGGLDPMGNHDHGTMQAHSKMRGSAIAATLSDTPQNAPQIPSQKFVALGVGASPENEDKPADLVVNVMGLQYAWIFSYPESGVSSGELHIPANRDVQLNISAQDVLHAFWLPEFRLKQDAIPGRPSELRFTATKTGEYRVVCAELCGAYHGAMKALAVVHTPEEFDTWLQSQQVASSQNLEQAVAVNPGELSDGEFLAPYVREIKINSETLEQLHPTHH
>NC_019729.1|WP_015176330.1|3083781_3085587_+|cytochrome-c-oxidase-subunit-I
MTQAQFQETANTEARGTAPADRHWRDYFTFNTDHKVIGIQYLVTTFIFYLIGGVMATLVRTELATPDADFVTPELYNSLFTVHATVMIFLWIVPAGAGFANFLIPLMIGAKDMAFPRLNAVAFWLIPVGGVLLLSSFLVGAPQAGWTSYPPLSLVTAQAGEEIWILSVLILGTSSILGAVNFAVTIFTMRVPSMGLNEMPLFCWAMIATSALTLIATPVLAAALILLSFDLLAGTAFFNPTGNGDPIVYQHLFWFYSHPAVYIMIMPFFGVISEVLPVHSRKPIFGYLAIAYSSLAISFLGLIVWAHHMFTSGTPGWLRMFFMITTMIIAVPTGIKIFSWLATIWGGKLRLVSAMLFGMGFISTFVLGGITGIMVASVPFDIHVHDTYFVVAHLHYVLFGGSVFGIYAAFYHWFPKMTGRMINEFWGRVHFVLTYVGFTVTFLPMHALGMQGMPRRVAMYDPKFTTINVICTVGAYMLAVSTIPFIINVIWSWMYGPKAGDNPWQALSLEWMTTSPPPIENFEGVPVLATGPYDYGMEKIQHTGERLRLKLRENATRNAQKTGIPIAEAQASTFFGGTATLVAPESEINVDSPADESQDGE
>NC_019729.1|WP_015176331.1|3085716_3086340_+|heme-copper-oxidase-subunit-III
MQIPAIDPTKTALNYHREGEVEAHGEEHPDHRMLGVIVFLCAEGMIFFGMFAAYLIYRAMAPVWPPEGTPARELLLPGINTVILIASSFVIHNADTAIKKNDAAGMRNWLLVTIAMGAVFLAGQVYEYTHLEFGLTTNLYASCFYVLTAFHGLHVTFGVLLMAGVVWRSRVQGHYSSEHHFGIEATEIYWHFVDVIWIVLFLLLYIL
>NC_019729.1|WP_041623091.1|3086501_3086789_+|HNH-endonuclease
MQCELCDRQMEALTAHHLIPKQNTKRKNEDPSPTIDICSACHRQIHSLFENKHLAQELNTLEKLKNDPELQKFVSWIKKQKTDKRIQVRGKKARS
>NC_019729.1|WP_015176333.1|3086954_3088187_+|hypothetical-protein
MNLISLELAKDRSRIFKNYLQMEIDAQANINKLAFLDRGIEKSPYQQHIKNYPDYLKQKSDGLKVISSIPGPNNPLKLTPFPSLGELPQINSQALSFLHEDIKQACVCIGTFVDGKIQAQWLGKNALSNTEQWSATKIIPLLNIVSQVNSKYPDCDIDNCVVRDGNGLRDDFYFYDLAKDMISYASNIASSNSLAAMFKRFDTRTGLEQWLKSATGNNDLIFRGDYGENPYHNNPKIFDLSKKQVLLSAALNSTKQTNSVSAYDLTRLISMLGWHFHIEQRSRLKGAQWNSLESIVRAMGHDSARYVDVAIKTLGMDSLITSPVIISKLGYGLSSIRGTLETVYVALVRFVDERPKAAGKPAKLRTLAMTLRAEKAVGGSSSVDRLAIELDARFCAEVTEILRRLFAEEF
>NC_019729.1|WP_015176334.1|3088201_3088501_-|(2Fe-2S)-ferredoxin-domain-containing-protein
MKITESSRQVLVCQNRTCRKQSAAKVLAAFQKLSPSEVEVVASSCLGQCGNGPMALVLPEEVWYNGVCPEEVATITEQHLRGGKPVERMLYRKFHRLSH
>NC_019729.1|WP_015176335.1|3088778_3089753_-|cysteine-synthase-A
MDIKNGFVGTIGNTPLIRLNSFSDETGCEILGKAEFLNPGGSVKDRAALYIIKDAEEKGWLKPGGTVVEGTAGNTGIGLAHICNAKGYKCLIVIPDNQSQEKIDALKTLGAEVRTVPAVPYKDPNNYVKLSGRLAAEMENAVWANQFDNLANRRAHYETTGPEIWEQTNGKIDVWVAATGTGGTFAGVGMFLKEKNPAVRIVLADPMGSGLYSYFKTGEIKTEGSSITEGIGTSRVTGNMENAPVDDALQIDDAEAVRVVYQLLRKDGLFMGGSVGINVGAAVALAKQMGPGHTIVTVLCDGGARYQSRLFDRQWLASKGLSPD

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Crispr_ID: NC_019729_31

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_31

3146932-3147063

Orphan

Consensus_repeat	Method
CCACATCTGCGGGTTGAAACGAAATATTTTCGTCCATCAAACCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_31

>merge|NC_019729|31|3146932-3147063|CRISPRCasFinder
CCACATCTGCGGGTTGAAACGAAATATTTTCGTCCATCAAACCCGGCTTCTGAATTCCCACCGACAGAAGAAACCGGGTTTGATTGCCACATCTGCGGGTTGAAACGAAATATTTTCGTCCATCAAACCCGG

>NC_019729|31|30|3146932-3147063|CRISPRCasFinder
CCACATCTGCGGGTTGAAACGAAATATTTTCGTCCATCAAACCCGG	CTTCTGAATTCCCACCGACAGAAGAAACCGGGTTTGATTG
CCACATCTGCGGGTTGAAACGAAATATTTTCGTCCATCAAACCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176396.1\|3149171_3149891_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176385.1\|3139688_3140468_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176394.1\|3147526_3147754_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|376855
NC_019729.1\|WP_071883982.1\|3152871_3153369_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176384.1\|3138827_3139655_-\|DUF3037-domain-containing-protein	unknown	unknown	gnl\|CDD\|378608
NC_019729.1\|WP_015176400.1\|3153595_3156451_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NC_019729.1\|WP_015176397.1\|3149887_3150457_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NC_019729.1\|WP_015176391.1\|3145086_3146043_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176393.1\|3147135_3147396_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NC_019729.1\|WP_015176395.1\|3147750_3148920_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
NC_019729.1\|WP_006632574.1\|3144581_3144791_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NC_019729.1\|WP_015176392.1\|3146042_3146897_+\|DUF1822-family-protein	unknown	unknown	gnl\|CDD\|370155
NC_019729.1\|WP_190274393.1\|3151868_3152117_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176388.1\|3142031_3142358_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622518.1\|3142512_3142779_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176398.1\|3150535_3150802_-\|DUF370-domain-containing-protein	unknown	unknown	gnl\|CDD\|179823
NC_019729.1\|WP_071883981.1\|3152415_3152790_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176387.1\|3141415_3141883_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015176390.1\|3143556_3144384_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NC_019729.1\|WP_015176389.1\|3142818_3143100_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176395.1\|3147750_3148920_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	1.68433e-159
NC_019729.1\|WP_015176397.1\|3149887_3150457_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	5.4471e-103
NC_019729.1\|WP_006632574.1\|3144581_3144791_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.0407e-06
NC_019729.1\|WP_015176392.1\|3146042_3146897_+\|DUF1822-family-protein	gnl\|CDD\|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	7.84185e-34
NC_019729.1\|WP_015176394.1\|3147526_3147754_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|376855	pfam02609, Exonuc_VII_S, Exonuclease VII small subunit. This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.	2.22584e-09
NC_019729.1\|WP_015176400.1\|3153595_3156451_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	3.98894e-96
NC_019729.1\|WP_015176384.1\|3138827_3139655_-\|DUF3037-domain-containing-protein	gnl\|CDD\|378608	pfam11236, DUF3037, Protein of unknown function (DUF3037). This bacterial family of proteins has no known function.	1.34444e-19
NC_019729.1\|WP_015176398.1\|3150535_3150802_-\|DUF370-domain-containing-protein	gnl\|CDD\|179823	PRK04323, PRK04323, hypothetical protein; Provisional.	6.35737e-49
NC_019729.1\|WP_015176387.1\|3141415_3141883_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.27133e-08
NC_019729.1\|WP_015176390.1\|3143556_3144384_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.50874e-44
NC_019729.1\|WP_015176393.1\|3147135_3147396_+\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	2.31588e-24

>NC_019729.1|WP_015176392.1|3146042_3146897_+|DUF1822-family-protein
MVNSIDTYLLEIPLEQTARNLALQFASEQANPQKGKRVYFNTLAVWAVNYFLEWMEMETDIQSGDSWNPAMRAVVDVGDLVLPGIGKIECCPVQLGESAIFLPEVRENRIAYIVVQFAEPFDKVKLLGFIPAVEILDKTEEISLSNLKPVEELWEYLDRIELAIPLVQNEIEELLSDLEENDPVQAQVRDNLQNKSISEIVAILNKVLHSSEKSDWGYEGGKALAGSGSSSGGLGNRDISFSRDQSSPVEKASDIEEDVKAELNLIAEDLLEKLAEIWGDDDDL
>NC_019729.1|WP_015176391.1|3145086_3146043_+|hypothetical-protein
MTRHDTPVEPLAALVPVGASFNLLLPPTGCELKPISLTLLLLAGYSAIFPGRIELSRCHPNVPVNTDEQLRQLLQLLKDSQEGSKEQERLKNQLCQLIPRLPGIRKHPYPNIDLEEMMQEAYCGFLKTLSAFLRGIDLDNLAADVLRTRVVQRFNKTLKNKVYEQYRRMQQQIFSVSFDAPITSNRGEKFAAQEPIDHTTKNGIEQLIEREQAQNKQRIGRQLWQCIEDDPTGELRNSYPNEKIDKKKPNNPENRRPRPDANSHVLALRLLLQDPPDKLSKIARELNIDYQTLNSHWKRTGLALVKEIALKFGYQPEE
>NC_019729.1|WP_006632574.1|3144581_3144791_+|CsbD-family-protein
MSTEDRAKAIGKNLEGKAQEIFGNITGNRKDQVEGKAKQAEAAARHAAEDAKNAVKNLADKAKRSIDKL
>NC_019729.1|WP_015176390.1|3143556_3144384_+|PHP-domain-containing-protein
MLELHCHTTYSDGTLTPAELVAAAASSGVRALAVTDHDTMSGWDEAFAAAALYGIEIVPGLELSTVHNGRSLHILGFYPDANKLRVPLNDRLEGRFRRSQEMVEKLAAMGYAIELPKTSPGMAPGRPHIASALVKAGHAKSSREAFDRWLGDDGPAYVHYEKFSIVEGIDLLKSCGAVPVWAHPYLFRGGAVEEVLQELVNAGLMGVEVYHPSHSSSQIQKLKELCLDYGLLATGGSDYHGPDPERKAADSTQLNMLHLPLELLEPIKVAAASLK
>NC_019729.1|WP_015176389.1|3142818_3143100_+|hypothetical-protein
MQATNQERIIDLTIHYTNGKQQHFQFSAPEGTVGEQATLGTRLHKMLTADPIILELADKLVVIPVHNIQSIEISPVPSKLPEGVISPMREIKK
>NC_019729.1|WP_041622518.1|3142512_3142779_+|hypothetical-protein
MSQVATEAKLSHFANWHKRKPDRPNIAGEGSRTLRSEDSATANCILGKLASFRTVFVIKLGASELSYRKPGSVKSFPTVVRSPVLIDC
>NC_019729.1|WP_015176388.1|3142031_3142358_-|hypothetical-protein
MKSTLCFPETSIESNTVAVNNNAIESCIVAAWIDLVGGDFDSLGGDDWLPLCGDIDDGEIYREWFLWQDSEVTQEWEAYDPITNYRVVASSREMMIAKIDQIEDTRKI
>NC_019729.1|WP_015176387.1|3141415_3141883_+|hypothetical-protein
MELTNFIALSVIIALVLGIGFGTMTWAYFGKGSISVLFKEPILTYPEFPDTDSGSKASVYFQQGIEAYQSGKYRKAKDKFTSAVEQVSTLAEAYHNRGLAFANLRSDDEAVADLIRASELYQQQGAGFAIDTIKQNLAALKQRKLEREKQKAVAT
>NC_019729.1|WP_015176385.1|3139688_3140468_-|hypothetical-protein
MSDRAETKPETIKRWKDCLEAGIDRGEDPIIIITFRSGWDSAARPVLARGIDKREYVIKGQQAGRQIVNDQVVARLGMAIGAPVGEPCIVEISEELIAEDSRFSYLTPGTAHATLYIPKCSSEREEINYTNQPENRERFALLILLYGWVYANDYQFIYKNARPNLVYSVDHGHFFPGGPEWKQRDLLQAASAEINHRLVSNCKLKLEDIRQGLPLLDAVSEETIIQAVAAPPSEWGLTIDERVTLVEYLVKRRQDLLAL
>NC_019729.1|WP_015176384.1|3138827_3139655_-|DUF3037-domain-containing-protein
MASKYSIVQYVPNPIANERINIGVVAFNEEEVRVQFLTNWERVRHFGMEDVTFLKEFAQRMSQAAASGLIFPGDNRNAPYQERLNKIARDWLSAIQWTEPRGSLEDVDSLLEDIASNFLVDLNSQKPHRRDREAAARLTTAKFRKVLQQYVKNDAKKLLKTSYSVQGIHTEHKFDAVIANGRPYLAAHAISFEVKIPEHLQNSLSWMITDVKQFQPDFPIAIVALQPKKDVDNYQERQQTYQQATSTYSDLGAKVLAEDDVENWVLERLEKANLL
>NC_019729.1|WP_015176393.1|3147135_3147396_+|DUF433-domain-containing-protein
MTQNNLLSRISIDSNICFGKPCIRGHRIWVSLILDFLASGMTLEELLEEYPGIEREDVLACIAYGAELARDCYVEIPVGEKKVVLK
>NC_019729.1|WP_015176394.1|3147526_3147754_-|exodeoxyribonuclease-VII-small-subunit
MIDSQLRQSDWNYEETVDRIEAIIDRVESGELPLEEVFEQFAVAVECLQECESFLARGKEQMDLSIELLAAEPDF
>NC_019729.1|WP_015176395.1|3147750_3148920_-|exodeoxyribonuclease-VII-large-subunit
MTSILPDTALSVAGLTSYLQDLLEGDRNLQSVWLTGEVSNVSHHPSGCFFTLCDTNKSAAIRCVVWNSQRQKLVQIPAKGEQLLVLGSIRVYKNRGEYQLTVVQSLPAGEGLQALRLQQLRSRLDAEGFFDPARKRPIPAHPQIVAVVTSDTGAAWGDIQRTLAQRYPGLRVLLSPTGVQGEFAAAAIARAIARVELDGRADAIVLARGGGSAEDLACFNDERVVRAIANCAIPIITGIGHERDETLADLVADKRAHTPTAAAAQAVPILADLYLEHKQRTVNLANAVRTRFQTEEEHLQLLQNRLKRLPATSRTLRQATGKLEVLQEKLSALNPAAVLQRGYAAVIQSDGTIVRKTDGLELGEELTVRLSRGVLKVKIVEVLDAEEKL
>NC_019729.1|WP_015176396.1|3149171_3149891_+|hypothetical-protein
MTSMNVLRQEAAAIGITEEEARKYGDLRHKRTWSLAIEHHLSMQDFADRIEQSFTTSEPDSSSALNHSQTEESKDYGIQLTANLGESRATGENQTASLASPQQQAVAIGRSPGNSDHRSNQNRGFKQVVQNHIKALTIASASRTNLLNSQLNNWVCPECGPEGELGCYLCAGEGTVGDIPAICWTLAYMEMLGCSAREIEPLRKISPSLNILELNLKVCVAIKQSSEVLARTEKWVISH
>NC_019729.1|WP_015176397.1|3149887_3150457_-|guanylate-kinase
MKSGKLIVLTGPSGVGKGTLVRSLLNRHPKLYLSVSVTTREPREGEIEAQHYYFVSRSRFEQMVEAGDLAEWAQFAGNFYGTPYFGLKQGIGEGKWVILEIELEGARQIRNNFPEALRIFILPPSWEELERRLRSRGQDSETAIARRLVRAKEEIEAAGEFDFQVVNDDLEVALKKLESILNLVELSGN
>NC_019729.1|WP_015176398.1|3150535_3150802_-|DUF370-domain-containing-protein
MDIQLINIGFGNIVSGNRVIAIVSPESAPIKRIITDARERGQLVDATYGRRTRAVIITDSSHVILSAIQPETVANRFAIGKDSQGRDD
>NC_019729.1|WP_190274393.1|3151868_3152117_-|hypothetical-protein
MPIERVSLEMIDRGIYHFSVAYQKGLASDLVEYLAAAKNQDLGIVKRRRKPHVRLIISPFPGTQRSPEQFFFNNKGTNGVIF
>NC_019729.1|WP_071883981.1|3152415_3152790_-|hypothetical-protein
METNPKQADTNWEEDLLKTVKPKTLLLLERGFYKFAFWSKLIDQEIGFITRIKKGAYYQVERVLTNTYDVKDQIIKIGAGTKNTPALTIRLVQIRSQTSWRSYLTSVQEPEILAGSISMKAAQL
>NC_019729.1|WP_071883982.1|3152871_3153369_-|hypothetical-protein
MIRKKRINRDRAKKKNSPQIENEAIANHLEDLLIPAMAAQKTFDRQLNLRDRILTLPLMMAAILSLLWRNVAGVTELTRLLNREGFLWCEPSEISQQARSQRFLTFPAILFEKLFKELLPHFRRKWLMRKSKPLPDSVQFALKNFENIWIADGSTLEALFRKLES
>NC_019729.1|WP_015176400.1|3153595_3156451_-|diguanylate-cyclase
MWYLPICQEDEEIQNITPAGGGKKIVIMNQDASRLVVSRQGKIEAMEIQQRSKDKPDRQQQNASDRLSQFSTTKELEASLQECLDFKRAIDRSALAVRTDARGIINYVSDLVCSISNYSRGELIGSHFGILHSEYKSSEIIKNLLSTVAKGEVWQGDIKNKAKNGSDYWVYAAVVPLLGCKGKPYQYLAIGFEITDRKAVEAAQAEANRAKDEFLAIVSHELRSPLSAILGWAQLARSRNLNEATTSRALEIIERNAKLQNRQIDNLLDLSRLLRGKVCLNIGRVHLPSIVESAIDTLRPAADAKNLRVEKHFDPAVSYVLADAERLQQVVWNLLANAIKFTPESTPYPVQVRIEPTESGVLIRVSDSGCGIDPKFLPHIFDYFRPADSFQNTEQNRLGLGLLIVRQLVELHGGSVWASSPGLGQGATFGVLLPSANKNAPDDRTAAIAQSESRPGSVSKPLAGKQVLVVESSAEIRQFLKTGLEAFGAKVTAVGSAAEAMAELQQSRPDVLVSDMTVSGADGCHLIRRIRAMEMSEHRELLPAVALTGGIKEEDSASALEAGFQRHLSKPVEANQLVSAIAQLAGLTGFGSGEWGSGNIRATAPQPTLPEPNSFDDKNHLEQLTSDCRELPLLLVVEDNNFLLAYLQTLLSPYYRVAVASDGVEGLEKAKSLQPNLIVSDQIMPRQNGLDLLKEIRNTPELKSTPVIFLTARSGMEARIESLDAGADDYISKPFDERELLARVRNLLRSHSAEQQLAELNRQLLQQKKQLETVNRALHYLANYDSLTEVRNRHSFNEYLDTEWRRLAREEAPLSLIMCDIDYFKLYNDTYGHQAGDECLRQVAAVIQHSVKRAADLVARYGGEEFVVVLPNTDIEGATCVAEMIAQQVRGLHIAHANSAVRQYVTLSLGVACCIPGARSQPGELIAMADESLYRAKEAGRDRVSVATFQG

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Crispr_ID: NC_019729_32

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_32

3371394-3371473

TypeIII-D?,TypeIII-A

Consensus_repeat	Method
TTCCTCCATCCGTTACATCCCTTA	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NC_019729_32

>merge|NC_019729|32|3371394-3371473|CRISPRCasFinder
TTCCTCCATCCGTTACATCCCTTAAAAAATCCGTTGCCGAACTTCCTTCTTCCTTTTTCCTCCATCCGTTACATCCCGTA

>NC_019729|32|31|3371394-3371473|CRISPRCasFinder
TTCCTCCATCCGTTACATCCCTTA	AAAAATCCGTTGCCGAACTTCCTTCTTCCTTT
TTCCTCCATCCGTTACATCCCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176575.1\|3378032_3378941_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_019729.1\|WP_015176569.1\|3371496_3372402_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|178419
NC_019729.1\|WP_015176574.1\|3376653_3377868_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_019729.1\|WP_015176571.1\|3372931_3373546_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176561.1\|3363392_3363932_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375857
NC_019729.1\|WP_015176572.1\|3373513_3374446_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622533.1\|3381817_3382315_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_019729.1\|WP_015176577.1\|3380634_3381258_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019729.1\|WP_015176566.1\|3368461_3369232_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
NC_019729.1\|WP_015176565.1\|3367388_3368135_+\|DUF1995-family-protein	unknown	unknown	gnl\|CDD\|370448
NC_019729.1\|WP_015176568.1\|3370775_3371300_+\|DUF4330-domain-containing-protein	unknown	unknown	gnl\|CDD\|379510
NC_019729.1\|WP_015176567.1\|3369551_3370403_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320692
NC_019729.1\|WP_015176562.1\|3364247_3365021_+\|glucose-1-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133015
NC_019729.1\|WP_015176576.1\|3379335_3380535_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340837
NC_019729.1\|WP_015176560.1\|3363096_3363396_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376019
NC_019729.1\|WP_015176559.1\|3361642_3362971_+\|glycoside-hydrolase-family-39	unknown	unknown	gnl\|CDD\|366525
NC_019729.1\|WP_041623132.1\|3381348_3381645_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176564.1\|3366479_3367211_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NC_019729.1\|WP_015176563.1\|3365337_3366408_+\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NC_019729.1\|WP_015176573.1\|3375362_3376271_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293801

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176575.1\|3378032_3378941_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.37142e-100
NC_019729.1\|WP_015176569.1\|3371496_3372402_-\|alpha/beta-hydrolase	gnl\|CDD\|178419	PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.	2.78171e-26
NC_019729.1\|WP_015176574.1\|3376653_3377868_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.86268e-122
NC_019729.1\|WP_041622533.1\|3381817_3382315_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.01287e-09
NC_019729.1\|WP_015176561.1\|3363392_3363932_-\|hypothetical-protein	gnl\|CDD\|375857	pfam18431, RNAse_A_bac, Bacterial CdiA-CT RNAse A domain. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. Structure analysis of CdiA-CT shows that it adopts the same fold (with two beta-sheets forming an overall kidney shape) as angiogenin and other RNase A paralogs, but the toxin does not share sequence similarity with these nucleases and lacks the characteristic disulfide bonds of the superfamily. Furthermore, structural comparison analysis identified human angiogenin, Rana pipiens protein P-30 (onconase) and mouse pancreatic ribonuclease (RNase 1) as the closest structural homologs of CdiA-CT.	1.02767e-46
NC_019729.1\|WP_015176566.1\|3368461_3369232_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.98084e-26
NC_019729.1\|WP_015176565.1\|3367388_3368135_+\|DUF1995-family-protein	gnl\|CDD\|370448	pfam09353, DUF1995, Domain of unknown function (DUF1995). This family of proteins are functionally uncharacterized.	1.28447e-85
NC_019729.1\|WP_015176568.1\|3370775_3371300_+\|DUF4330-domain-containing-protein	gnl\|CDD\|379510	pfam14221, DUF4330, Domain of unknown function (DUF4330). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 165 and 177 amino acids in length. There is a single completely conserved residue G that may be functionally important.	1.33008e-68
NC_019729.1\|WP_015176567.1\|3369551_3370403_-\|M48-family-metalloprotease	gnl\|CDD\|320692	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein. This family contains peptidase M48C Ste24p protease bepA (formerly yfgC)-like proteins considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. Several members of this family also contain tetratricopeptide (TPR) repeat motifs, which are involved in a variety of functions including protein-protein interactions. BepA has been shown to possess protease activity and is responsible for the degradation of incorrectly folded LptD, an essential outer-membrane protein (OMP) involved in OM transport and assembly of lipopolysaccharide. Overexpression of the bepA protease causes abnormal biofilm architecture.	6.94348e-87
NC_019729.1\|WP_015176562.1\|3364247_3365021_+\|glucose-1-phosphate-cytidylyltransferase	gnl\|CDD\|133015	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.	2.27548e-149
NC_019729.1\|WP_015176576.1\|3379335_3380535_-\|glycosyltransferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	2.14617e-50
NC_019729.1\|WP_015176560.1\|3363096_3363396_-\|hypothetical-protein	gnl\|CDD\|376019	pfam18593, CdiI_2, CdiI immunity protein. Contact-dependent growth inhibition (CDI) is an important mechanism of inter-bacterial competition found in many Gram-negative pathogens. CDI+ cells express cell-surface CdiA proteins that bind neighboring bacteria and deliver C-terminal toxin domains (CdiA-CT) to inhibit target-cell growth. CDI+ bacteria also produce CdiI immunity proteins, which specifically neutralize cognate CdiA-CT toxins to prevent self-inhibition. Structure analysis of CdiI immunity protein from Yersinia kristensenii shows that it is composed of eight alpha-helices packed together to form a nearly spherical structure with weak structural homology to a putative TetR family transcriptional repressor. The CdiI protein fits into the curved cavity of the CdiA-CTYkris toxin domain where it most likely neutralizes toxin activity by blocking access to RNA substrates. This domain is mostly found in gammaproteobacteria.	1.99959e-30
NC_019729.1\|WP_015176559.1\|3361642_3362971_+\|glycoside-hydrolase-family-39	gnl\|CDD\|366525	pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39.	4.17779e-11
NC_019729.1\|WP_015176564.1\|3366479_3367211_+\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	1.90029e-69
NC_019729.1\|WP_015176563.1\|3365337_3366408_+\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.23903e-12
NC_019729.1\|WP_015176573.1\|3375362_3376271_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293801	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain. Myxococcus xanthus Tar3 may function as an ammonium regulator/effector protein involved in biosynthesis of the antibiotic TA. Some are members of this subgroup are annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.13999e-117

>NC_019729.1|WP_015176568.1|3370775_3371300_+|DUF4330-domain-containing-protein
MKILDSQGRLFGKLSILDVAAALIVLLVAVGIFFFPGTSGGSVAQVGTSVKPVEIDAIAIGLKGTNVPNLFKAGDKINVVIRNQPSGQITIKSVKTLTRTLAVPQPNGTLKALPDPREEEAFSKNMMFTLEGKGQLTENGPVLGNTKVKIGTTLELEGSKYIFNASVIDVRVKE
>NC_019729.1|WP_015176567.1|3369551_3370403_-|M48-family-metalloprotease
MLKSFWLTCRHTCGRGIYLFLSLIVAAGIWVLSPEPTQAFSLPELIFRGIQVIQLSNMSDRQEVAIGQQINQQLTNREFKIDRDRDTTLYINRIGQRLAQESTRPNIPYTFQVIDDDTINAFATMGGFVYVNKGLMAAADNEAELASVIAHEIAHINARHAIKQMRQMAIASGVASATGLDRSQAVQIGVELALRRPHSRQAEYEADQLGLQTMGRAGYAQSGMVDFMKKLLNKPSPPSILSTHPATGDRIAAISQAIDPALASGEGLNNEDYRLEIRRLLGS
>NC_019729.1|WP_015176566.1|3368461_3369232_+|serine/threonine-protein-phosphatase
MEHRRIVIGDVHGHYDGLMTLLEALAPSSNDRVYFLGDLIDRGPKSAQVLDFVQQSPYHTLLGNHEQLMLEALSGTPMDMRAWQSWLYSGGDATVASYRDTGMMPYKHLEWLRSLPTHLDLGDIWLVHAGVDPHLSIDEQSIEQLCWIRREFHTMSKPYFPNKLIITGHTITFTFHGVRPGELVRGEGWLDIDTGAYHPKSGWLTGFDLSYRRVYQVNVFNNQVRILPFDEVVRQLRPQPIAPPEPAIDSVVQQQC
>NC_019729.1|WP_015176565.1|3367388_3368135_+|DUF1995-family-protein
MTELPKDLNEAIAQSRIATAAALSDGKTLLQVELVFPEIALQAQSITLQFLPEFEEIYPGVKVFFPDTGAAALARRDWGETPFKVTDLGSSRTPVEDKIAPEDQLFLLINPAAVEVAQVEKIYIAAAGRPVILLNPRLEDVATIGIGYAGRQLRDRFLNKIESCYYIRPLDTAALFRCYPQPWQVWLETNDEYELISETAQKPVGDDLERILAASLPSADPDSTTPAKPLKKKGFLAELQTFLKALTQ
>NC_019729.1|WP_015176564.1|3366479_3367211_+|cyclase-family-protein
MTNNFKSNNLKTIAYSKIVDLTHAIHPNIPIWSGDPATEIATVAQIETDGYFLRKFSMGEHSGTHINAPNSFYAGGASIDSYSPQSLVSPAIAIDIREQSLANPDYTLTIDDILTWEQQHKLIEPGNIVLLYTGWQEKWDHERAFFNRDDRGICHFPGFGKAATQFLLEERSIAGIGTDTHGVDTGRDESFAVNKLVLEKQRIVLENLANLDLLPAADITLVIGILRLLGGSGSPVSVLAFVD
>NC_019729.1|WP_015176563.1|3365337_3366408_+|acyl-CoA/acyl-ACP-dehydrogenase
MDSQDILNSTETYLQKCISPHAEIIDSDSEALKTAVAGLEDRSLLALRVPQKWGGAEIAPEIFYQYQELTARYSGALSFLQTQHHSATAMLANSDNEMLKSRYLPAIAQKELRLGIGFSHLRRSGNPAVTATPTKAGYLLSGKVPWVTGFALFQKFIVAAVLPDNRAVFGLVPFANIERESGKIACSEIMQLIAMNSTNTVTATLDNWLLHESEIISVKPLGWISENDTKNILNFVPGTFGCIRAGLDVIAAAAAAKNSPFIAAACQKLEQKLDRLKQKFPQSQHSSKTEQLALRAQAIDLAVRCGHAAVAVSSGAANGALHPAGRVYREALVYTVSGQTKDVMEATVDRLIEFEI
>NC_019729.1|WP_015176562.1|3364247_3365021_+|glucose-1-phosphate-cytidylyltransferase
MQVVILAGGLGTRLREETEFRPKPLVDVGGHPIIWHIMKIYAHFGFQQFIVCLGYRGNMIKEYFLNYEAMNNDFTICLGRQNTITYHEEHLEQDFKVTLAETGAASMTGGRVKRIEKYIDRENFMVTYGDGVADVNIEALVDFHKSHGKLATVTTFRPISRFGILDVDSDSRVVQFTEKPQIDGWISVGYMIFNRRVFEYLGEDDCILEQEPMQRLAAEGQLMAYRHEGFFFAMDTYREYKYLNELWDEGKAPWKVW
>NC_019729.1|WP_015176561.1|3363392_3363932_-|hypothetical-protein
MKNQLDRLKKFLGILCAIASIIILFQSAIPGVYATVVALEGSTIPQTTVAFVPNIPGGGLDFHESAGGHTLERHVGKTEAQLAQRLASETTISAASSFTNLSVAEAAIAEAMNRNQSAIDSWVKSRGNRYTIDYNANRIIGITLRRRASKATSTSRLRIVLQRSVKLPPGYFILTAYPQ
>NC_019729.1|WP_015176560.1|3363096_3363396_-|hypothetical-protein
MINQFPHLTQFFSSYFHQDWPLEADTPSDVVNNYRSSEPRPSVEAASQELSKLLEMPIAPSDLEAFILDELGCYYDPQSENQTVREWLESVQKSLNNPS
>NC_019729.1|WP_015176559.1|3361642_3362971_+|glycoside-hydrolase-family-39
MQFTFKFPRINKLLPICLAIVTLLLITYLGQQPTVAQLRSNVTVDFGQPATGTISMSGILHGIDTSKPPDSSIKPLQPKLWRAGRLDIYDRVIASGAEFQLVVSDLWGYGSNPNGWPYQNYPAWEAFIRQLAQQNKGKKIIWDVWNEPDWKDPFWNGSREQFFETYKRAYKILREELGPSAMIGGPSLGRYSKEYLAAFLDYCKANKLEVNFLSWHELNDTMILFVDDHVIEAKRNFQQSPSYKELKLQKIYVNEIVGNLAQYQPGEILGYLYNLEYAKADGACRACWESKGPNKVSNCFNNTLSGMVTPNTFEPRAAWWTYKAYADGVNSRVRSWSNNNRLVALASKSNPEGKAQILLGYFDPNFSSATTVTLTLGNLEQLGIQRGQKITLKLEKIPNNQEGAVPKLVTVKEESLSVGSGSLAYVIPNFNVHEGYLLTVSK
>NC_019729.1|WP_015176569.1|3371496_3372402_-|alpha/beta-hydrolase
MLVPLGFGQRSIVTSLGRMVYYTAENMPWMGLPTSTSENQPNLVFFHGFGGGSSAYEWSKVYPAFAAEYRILAPDLIGWGRSEHPPRNYQVEDYITTSIEFIEKTCGSPTEVIASSLTGAIAIRAAIARPDLFKSLILTIPSGLSDFGQDYGTSFFAKLVNTPILDRLLYSTGIATDGGIRSFLEQRQFADSRRVYQEIVDAYLESALEPNAEYAALSFVRGDLCFDLSLYITQLTTPTAIIWGEKSQFTGPDIGQRLANLNPEAIKVFQPLENVGLTPQLEIPAVTIGLIRQYLKLLSEK
>NC_019729.1|WP_015176571.1|3372931_3373546_+|hypothetical-protein
MQLLRKRDREGFMVDAKSLQSDGFAEFDTACRSKDLNGKKSFVATPERSGAGSDVRSRATVPAIVRVALEDLKCFEVVEHQFAHWGVTFSNAVAIQPSNPSFFTGSGATVLMGAPKSGLIEVTFKYPVRWVSGLVTSSRRTVLSACDIDGNPIVQDEMPAPNLVGSNSPIAPRAPLRVKAPNIYRITFYAFDGQLVVDDLMFGF
>NC_019729.1|WP_015176572.1|3373513_3374446_-|hypothetical-protein
MNQVKKTTTKLNRSPVKVSDRTLELGNLPLSDLSLEKTDDRALRDFSSDDRPPGTPTATGRTAEKRRRRVDGKSEWARSPVVSTAFLKWLLESLTRSKGWLAVVTLAAVWEWWNSQLLFSTGLGIAAMMLVYRGQSRDWQLLRAKGEQFWEGPNRRFVLAVGTGGMATLGAYMSLAIWADSSSHWIALSLILQNLGTIAIAGLLLRQGLSLGAAKDEVALDRILADLTDADPVKRLIAVRQMTDLVNQGGFGPVSSVKSSLARSRAAECFRLMLSREPEALVRNALLEGLQTWDTTYGMALKSKHQVIDY
>NC_019729.1|WP_015176573.1|3375362_3376271_+|MBL-fold-metallo-hydrolase
MSSMHNQFTVHFWGVRGSIASPGAETVRYGGNTPCVEMRVGESRLIFDGGTGLRVLGQTLLSQMPVKAHMFFTHSHWDHIQGFPFFVPAFIPGNCFHIYGAIAPNKATIQQRLHDQMLHPNFPVPLQIMGADLKFNDIEVGKPLEIGEIKVETALLNHPGEAIGYRVNWRGYSAAYVTDTEHFPDRLDENVLYLAQDAEVLIYDATYTDEEYYAEKSSKVGWGHSTWQEAVKVAKAANVKKLVIFHHDPLHNDEFLDRVGEQVAQRFPNSLMAREGLSLQLLPPDNDNDVSEVSVQAPHVPV
>NC_019729.1|WP_015176574.1|3376653_3377868_+|bifunctional-riboflavin-kinase/FAD-synthetase
MWVTSSCTAALTPTSVALGNFDGLHLGHRQVVQPILNRSPGQNSATVIASGPNLRSNAGKDQNLETEHPATCYNDSAAPPDRADSRHNFEGLIGPRADGNSLYGRDSDGVDRLYSTVVTFDPHPQEFFSGQPKKLLTPMAEKVELLAAMGVEQLVLLPFDRELAALTAIEFVEEILVRQLKASRISVGVDFRFGRGRAGTAVDLQSIASGYGIDVGLVPLHNCGEGDRISSSAIREGLASGDLTRANQLLGRPYSLVGTVVGGQRLGRTIGFPTANIELPPEKFLPRFGVYAVRVSLKHGWEKMKEESSSYQRENPKSLITGKASNLSFVNGVMNVGCRPTVDGLQPTVEVHLLDWSGDLYGKTLSASLVEFLRPEQKFASLDALKTQIQADCDIARSVLAAKV
>NC_019729.1|WP_015176575.1|3378032_3378941_+|MoxR-family-ATPase
MRQHIERLKQNLGKTIVGKADAIRLVLVAVLSGGHALLEDVPGVGKTLLAKSLARSIDGKFQRIQCTPDLLPTDITGTNIWNPRSGEFEFLPGPVFANVLLADEINRATPRTQSALLEVMEEKQVTVDGVSRNVPAPFFVIATQNPIEYQGTFPLPEAQMDRFTLSLTLGYPAALEELQMLERLSDSVAVEDLQPCISLEEVQELRRLCAAVKVEGSLKQYIVDLVRSTREDEEITLGVSPRGAVALHRASQALAFMEGRDYGTPDDVKYLAPHVLSHRLIPAGGRRAKTIVDKLLRSVPIP
>NC_019729.1|WP_015176576.1|3379335_3380535_-|glycosyltransferase
MNIAYLINQYPKVSHSFVRREVLAVENCGMKVARFSIRSCESELVDGADQLEQELTKVILGVGVQGLAWGLLRVAATRPIRFIEAVRLMFKVGWHSERGILLHLAYLAEACILLNWFAESGIAHVHAHFGTNSTTVAMLCRVLGGPTYSFTVHGPEEFDKATLLSLDEKIKRSTFVAAVSSFGKSQLFRWCDRTFWSKIQVIHCGVDGAFLAAPYVPIPAAPRLACIGRLSEQKGHLLLLEAANLLAVQGLEFKLVLVGDGPLRSDIEQQILELGLQNHIEITGWASGDRVQQEILASRAMVLPSFAEGLPVVIMEALALHRPVISTYVAGIPELVEPGVCGWLVPPGSAEALAVAMRAVLEAPLEKLEQMGKTGAERVAQQHNVDLEAKKLVALFESA
>NC_019729.1|WP_015176577.1|3380634_3381258_-|hypothetical-protein
MPFSAYKTIAAVLKEFTISYIEANFIVETAFNIPDYFREDLEIVRQDNVVNNSEYAICEYIIVPILKEVWKQYRKNFILWSHQALNCDANLNGFPEYILAQKSPLGKLVFDRPYFVIIEAKQDDFEAGWAQCLAEAIADQRLNDKPEQDVFGIVSNGKLWQFGKLKTNVFTLNQKSYLIDDLDKLFAAINYVFQQCELLSNSDKLQS
>NC_019729.1|WP_041623132.1|3381348_3381645_-|hypothetical-protein
MTPRPITDREKRIIQLYADCQLAMTPQQFYAKWDVPQEALALICCRELSTVRRWFTRGGRHRHPQLHDLRHLALMNFLLEHFEAIPPELRQQLCLANS
>NC_019729.1|WP_041622533.1|3381817_3382315_-|helix-turn-helix-domain-containing-protein
MKEGSKYQSLLDYLRENRHLDEVTLNFAEIEALLNDALPPSALRQQAWWSNRKKGALQATAWMEAGYRVETVDFDAQRVTFRKLIQKIQVPQAGDGVQWNGELIKALRLHMGLTQAEFAQHIGVRQATVSDWENGQLPARSTSKHLDLIAEMAGFKYREESENSD

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Crispr_ID: NC_019729_33

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_33

3538828-3538923

Orphan

Consensus_repeat	Method
AAATTAGAACAAGAAATTGAGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_33

>merge|NC_019729|33|3538828-3538923|CRISPRCasFinder
AAATTAGAACAAGAAATTGAGGAAAAACTTAGAGCAAAAATCGAATTAGAAGTAGAAGCAAAGTTGCAGCAAAAATTAGAACGAGAAATTGAGGAA

>NC_019729|33|32|3538828-3538923|CRISPRCasFinder
AAATTAGAACAAGAAATTGAGGAA	AAACTTAGAGCAAAAATCGAATTAGAAGTAGAAGCAAAGTTGCAGCAA
AAATTAGAACGAGAAATTGAGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176699.1\|3541130_3541373_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274425
NC_019729.1\|WP_015176692.1\|3536579_3538088_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_019729.1\|WP_015176689.1\|3532265_3533267_-\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NC_019729.1\|WP_015176685.1\|3527120_3528530_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NC_019729.1\|WP_015176701.1\|3542415_3543114_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NC_019729.1\|WP_015176702.1\|3543110_3543380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184240
NC_019729.1\|WP_015176688.1\|3531072_3532053_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NC_019729.1\|WP_015176686.1\|3528572_3529844_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_019729.1\|WP_015176690.1\|3533739_3534768_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|270283
NC_019729.1\|WP_006635455.1\|3540557_3540770_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_019729.1\|WP_015176694.1\|3539142_3539502_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176691.1\|3534978_3536415_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NC_019729.1\|WP_190274403.1\|3543463_3543607_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176684.1\|3526131_3526839_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NC_019729.1\|WP_051041595.1\|3530164_3530932_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224042
NC_019729.1\|WP_015176698.1\|3540790_3541003_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_019729.1\|WP_015176697.1\|3540324_3540537_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_019729.1\|WP_015176683.1\|3524705_3525767_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528
NC_019729.1\|WP_015176700.1\|3541527_3542316_+\|DUF4058-family-protein	unknown	unknown	gnl\|CDD\|379094
NC_019729.1\|WP_015175175.1\|3543798_3544857_+\|photosystem-II-D2-protein-(photosystem-q(a)-protein)	unknown	unknown	gnl\|CDD\|176949

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176699.1\|3541130_3541373_+\|hypothetical-protein	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	0.00913407
NC_019729.1\|WP_015176692.1\|3536579_3538088_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NC_019729.1\|WP_015176689.1\|3532265_3533267_-\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	3.81732e-95
NC_019729.1\|WP_015176685.1\|3527120_3528530_-\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.84894e-08
NC_019729.1\|WP_015176701.1\|3542415_3543114_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.67722e-86
NC_019729.1\|WP_015176702.1\|3543110_3543380_-\|hypothetical-protein	gnl\|CDD\|184240	PRK13683, PRK13683, hypothetical protein; Provisional.	1.0974e-38
NC_019729.1\|WP_015176688.1\|3531072_3532053_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	2.61546e-80
NC_019729.1\|WP_015176686.1\|3528572_3529844_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.52059e-56
NC_019729.1\|WP_015176690.1\|3533739_3534768_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.09443e-84
NC_019729.1\|WP_006635455.1\|3540557_3540770_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	5.90188e-07
NC_019729.1\|WP_015176697.1\|3540324_3540537_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.02004e-07
NC_019729.1\|WP_015176691.1\|3534978_3536415_-\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.05583e-09
NC_019729.1\|WP_015176684.1\|3526131_3526839_-\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.31095e-56
NC_019729.1\|WP_051041595.1\|3530164_3530932_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	5.60144e-166
NC_019729.1\|WP_015176698.1\|3540790_3541003_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	4.62311e-07
NC_019729.1\|WP_015176683.1\|3524705_3525767_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	4.66446e-116
NC_019729.1\|WP_015176700.1\|3541527_3542316_+\|DUF4058-family-protein	gnl\|CDD\|379094	pfam13267, DUF4058, Protein of unknown function (DUF4058). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 244 and 264 amino acids in length.	1.25064e-142
NC_019729.1\|WP_015175175.1\|3543798_3544857_+\|photosystem-II-D2-protein-(photosystem-q(a)-protein)	gnl\|CDD\|176949	CHL00004, psbD, photosystem II protein D2.	0

>NC_019729.1|WP_015176692.1|3536579_3538088_+|UbiD-family-decarboxylase
MARDLRGFLKLLEERGQLRRISALVDSDLEIAEISNQMLQKGGPGLLFENVKGAEFPVAINLLGTEERVCWAMNMEKPHELEELGKKLGMLQQPKPPKKISQAIEFGKVLFDVVKAKPGRDFFPACQQVVIEGEGLDLNKIPMIRPYPGDAGKIITLGLVITKDCETGTPNVGVYRLQLQSKNTMTVHWLSVRGGARHLRKAAQAGKKLEVAIALGVDPLIILAAATPIPVDLSEWLFAGLYGGSGVQLAKCKTVDLEVPADSEIVLEGTITPGEVLPDGPFGDHMGYYGGVEDSPLVRFHCMTHRKDPIYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAIISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKSINIRDPRQVVWAISSKVDPVRDVFILPNTPFDTLDFASEKLGLGGRMGIDATTKMPPETDHEWGEVLESDPDVAAMVERRWAEYGLADLNLGQVDPNLFGYEMK
>NC_019729.1|WP_015176691.1|3534978_3536415_-|NYN-domain-containing-protein
MKCPRCESDQVRKNGCPNGHQRYLCKACRKQFFEPADPQSLSPKCTETRLNEAIPQGIESATTQESGGIAILLLDAENLKLKVNTEQFLASLCDYPLQVKIAFANWKNPSIGKLDAELYDRGYELIHVPGGANSADGKMIAFGAAILYRYRDVRQVFVCSSDGLLNHLCNQLQNQGVTVFRVRRKNSVLSVENCQNGESNHYSCEREEEIPSFEELASQVAELLKAEHKSIEERIARFSSVAELFKERQTVVFSSTISPAALAESAQNEVTPVLEASLATFAVNQNVAEPNFPEIIPGLNSNAIESLDVFKTILVEIIENAKIELKEDSISVVKIKKDFLAKYQSHADLVVKNFLGNKSSLIKYLQSESGVFQVQLIGQEHQVAIAKNSSTSTTHSSAALEASLVKIIRGLTARSPGSYIPINQVASEFNKLYNQPITKKLQSLNLGSNVIDFLQSCQTFKVKKNGKTYQVAIALSAR
>NC_019729.1|WP_015176690.1|3533739_3534768_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MNFFTGRWRRSFIVALAAAAFSLTLISSAVAAVTLNGSGATFPKPLYDRYFSQMRSANQITVNYEGTGSGAGIKALIAGTVDFAGSDALMTAEQIAEVKRGVMAVPTAGGAVAVVYNLPGVTNLRLNKDAMNGIFEGKITRWNDPKIAGISGQAKNLPNTPIRVAVRADSSGTTFIFSNHLQATGSTIKAAAQPKWPDTAVRGPGNPGVAALVKNTAGAIGYVQDTYARQNNLQTAFIQNKAGRFVDPSLAEAEKALAGETFPADFRLVEGNPNDGYPIVGLTWLLIYKQYPAAKAEAIKKMVNWVMTTGQGINKQLEFTQIPSATAQKVVQTVNQTVVARG
>NC_019729.1|WP_015176689.1|3532265_3533267_-|phosphate-ABC-transporter-permease-subunit-PstC
MINLSKKQKKQTRQPAEINTELDLTDTTGEGLWMESGFTIFVWGFALATAGTLFWISAVIFKDAWPAISHFGVSFLWNPKWDIGELQFGALPFIYGTVISSAIGIIIALPLGLSVAIVTSENFLPVWVRSPLGFMVELISAIPSVIVGLWGIFVLIPFLLPLQQSLFDNFSWFPLFSSEPLGPGMLPAGILLSIMILPTVAAISRDVLLSVPVDLRSASMSLGATRWETIFKLLLPAASSGIIGATILALGRALGETMAVTMVIGNSIQINTSLLAPSYSIPAVLASQFREALEPLHIGALMYLALILFAITLLVNAIAVLLVQLIGAKGAKT
>NC_019729.1|WP_015176688.1|3531072_3532053_-|phosphate-ABC-transporter-permease-PstA
MTQAQKLDSILDAEINNPLSLSRTLFSRGMTALAFALTALALLPLFAILYKILGEGLTHLSWEVLVSLPAPVGVEDQPNGFANAIIGTSLMVGIATLISVPIGVMTGIFLSEFGRENKAIANSIRFITVILSSVPSIVIGVFSYALIVVTTKAFSSLAGGFALGIIMLPVVALTTEQALKLVPTSYRLASAGLGGGRFQTMFRIIIPSALPTITTGILLAASRAAGETAPLIVTALSSQFWPPLVDKLGEIMQSPIGAETISKLQEIPDTLLTPTPSMSVLIYSYASSPYKEQNELAWTAASVLLGMVLIASVASRTVTQKRLQNR
>NC_019729.1|WP_051041595.1|3530164_3530932_-|phosphate-ABC-transporter-ATP-binding-protein
MPALRIQDLSFYYGTHKVLENLSMNIPHPQITAIIGPSGCGKSTFLKALNRIGELEGKVQIKGRVEFFGQDIYSQKVNINSLRRQIGMVFQRPNPFPLSIYDNIAYGVRIFGRKSKAELDEIVESALQSAALWNEVKDDLKKSAQGISGGQQQRLCIARALAVKPKILLMDEPCSALDPISTMKIEELFQSLRQQLTVVIVTHNMQQAARVSDYTAFFNTDESRIGHLVEFGPTSRIFTSASNSSTRDYIQGRFG
>NC_019729.1|WP_015176686.1|3528572_3529844_-|amino-acid-permease
MSSKLLKRELGIFGATLMGLGSIVGTGVFVSIGIAAEVAGPGVILAVGIAAFVAVCNGLNSAQLAANHPVSGGTYEYGYKYLNPWLGFTAGWMFLLAKTASAATAALGFAGYFLNAVGVADRTYLILTALVALATLTFIVLTGIRRSNIANTAIVSVTLLSLAVFVAVGLPEVRWEMTALQNHSSIGSIFQATALMFVAYSGYARITTMSEEVREPRETIPKAIIFTLVLTMLLYVGVAVVVAGAGEPDKLSLQIGGTTAPLEVIARSFRIPGVSQLLAAGAITAMLGVLLNLILGLSRIWLAMGRRRDMPRVLARLNPEGTTPYMAVVVVEVTIALLILVGDVKTTWSFSAFSVLIYYAITNLAALQLSPAERLYPQWLAWVGLGNCLFLAFWVEREIWLTGLALIATGLIWRAIVRLPAKN
>NC_019729.1|WP_015176685.1|3527120_3528530_-|NYN-domain-containing-protein
MPDRTPLLATQESPAFSAISRYITQTLITIQQQHPEWITEKYRKTPWAKPDFQSLLIGKLTKSFSVASDTDSLLLTAKKYLQILLIPEFVNSPQFSKLCAQIQQLAKSQTAPAKSEKSVSSEPPTPTANQPAPLPLGIAILLLDVENLQLTIETEKFLEGICHYPIQIKVAFANWRSMGKKDAEFHQRGYQLIHVPPGKDSADLKMATVGASIFVHYPTAKEIFVCSSDRALTHLSNTLQAHGLTVFQVRKQIDKIIVLNSKTGQVETHSLVTTPEITPLEQLVIQLKELIKKEQKRTSTQWIKVSTVSALFRENYGLVLNQVVAHHLLGTKTRDIFLKYPTDFVLHKPSEVSQTYVTLFEVRLSPPPPILSQEILNNHQAAPASLTEINSLEDLERALVKIVGDLTGNSPENSVFLSNVGSEFHRQYGKQITQIIKDFNLGRKFTKVLQSCASLQLKKAEKGWQVSLH
>NC_019729.1|WP_015176684.1|3526131_3526839_-|SDR-family-oxidoreductase
MHDKVVVVVGATGGIGSAVARKLADAGARLVLAARDSSKLDALASELSATEVLCVPTDITDLPQVETLMHKAVEHFGQIDALINAAGAGILKQWNKLEPADLDAMLDLNLKGSFYTSQAAANVMKERKSGHICNVIGILGKHSMAMGTAYCASKFGVVGFSKCMADELRRYGIKFTLFYFGGVDSPFWDNVSLKVDRSKMLTTETAANAIMFALSADPQAVPMEINIQPESHLFF
>NC_019729.1|WP_015176683.1|3524705_3525767_-|4-hydroxyphenylpyruvate-dioxygenase
MEFDRIHFYVENAKISRDWFVSRLGFQSIAGYANSHSHTEVVSSGNVCFVLSSPLTSASPAASWLKFHPPGIGDVGFRVKNIELAVARAAAEGGKILEPIQEDLNEGGYFKRAKIAGWGDLSHTLVERIGGHSRLSASPKLPVFTLIDHVVLNVESGDLSSAVSWYQKILGFQPQQNFDIQTQKSALRSQVMVHAEGGVQFPINEPASANSQIQEFLSANRGPGIQHMALQTNNIVRVVADLRSRGLPFLPVPPTYYSELQQRQNYLPADWPAIASSEVLADWQEDTPAAMLLQIFTQPIFAEPTFFFEIIERRVSLVNGIQVQAGGFGAGNFRALFEAIEREQMKRGSLIDD
>NC_019729.1|WP_015176694.1|3539142_3539502_+|hypothetical-protein
MKVSEIILNQINLLGTKVEVVGYLILYGDLGFLSTDFANILSSQNHRESILIEQPIKLKEQLLKKVPPYIGGPPYEDFVTIIGTLCESHQEPFPIALTHINLLILKIKEGKNIYHIEMP
>NC_019729.1|WP_015176697.1|3540324_3540537_-|helix-turn-helix-transcriptional-regulator
MGRIRLRVREFARDKGWNLTEVSKRTGIPYTTIVTYANSPGMATVDYTALDKMARAFDIAIEDLVEILEQ
>NC_019729.1|WP_006635455.1|3540557_3540770_-|helix-turn-helix-transcriptional-regulator
MGLIRLRVRELAEEKGWTLKEVSERSGIPYSTVRSYAHSPKLATVDYTALNKMARVFDIAIEDLVEILEE
>NC_019729.1|WP_015176698.1|3540790_3541003_-|helix-turn-helix-transcriptional-regulator
MGLIRLRVRELAEEKGWTLKEVSDRTGIPYSTVKKYAQAPKLATVDYTALQKLAAVFDLMIEDLVEVLEH
>NC_019729.1|WP_015176699.1|3541130_3541373_+|hypothetical-protein
MIPKQSTYRDRLQPWHLIRHLPNCQRLTVARFARRPDAESYLNALRRLMPAVPHTIVFVNAVSVLNENSVPIQTQLPIEV
>NC_019729.1|WP_015176700.1|3541527_3542316_+|DUF4058-family-protein
MPSPFPGMDPYLEHPELWPALHHLLISEIFRFLSPQLRPKYLVSLEVRIYETADDDLSIGIPDVNVIQPQTATELITSNVAVAAPPTQPLTVNIPMPYQVREGYLEIRERGNQALITLIEILSPSNKRTGKGRQMYEEKREEILGSRTHLIEIDLLRRGRKMPVIGNNVESHYSVLVCRGNRRPRADLYAFNVQNAMPAFPLPLRSGDTEPVINLQELFTQIYDIASYDLKIDYRNWEVIPPLSEADTIWADAWLRDRGLRD
>NC_019729.1|WP_015176701.1|3542415_3543114_-|ABC-transporter-ATP-binding-protein
MRAGGVGGDMSQPAVAVRDLGFCWPSGDRVLQGCSLDVPKGEFWMLLGTNGSGKSTLLRLMAGLLHPQSGEISLSGRVGFVFQNPDHQLVMPTVGADVAFGLVEEKLSNIQVRARVAEALEAVNLLDLQRRPIYALSGGQKQRIALAGAIARHCEILLLDEPTALLDPDSQLDLVAAVQRLVKNRGITALWVTHRLDELNYCDGAFLLEKGQVVDRGDPARLKQRLMQSQDV
>NC_019729.1|WP_015176702.1|3543110_3543380_-|hypothetical-protein
MFSIDIIVKNTPVSLSVQRKLEEDAETVYQEVLAAVRNSQPQILELTCEKNPEKKVAVLSSEISGVVVSQKSGASSTGRSPGFVSMTAE
>NC_019729.1|WP_190274403.1|3543463_3543607_-|hypothetical-protein
MSEVPEVPEALEAPEFFALHLGTSTVEESLGCASEPGWLGRYIGLNL
>NC_019729.1|WP_015175175.1|3543798_3544857_+|photosystem-II-D2-protein-(photosystem-q(a)-protein)
MTIAVGRAQTERGIFDVLDDWLKRDRFVFVGWSGILLFPCAYLAIGGWLTGTTFVTSWYTHGLASSYLEGANFLTVAVSTPANSLGHSLLFLWGPEAQWDFTRWFQLGGLWTFVALHGAFALIGFCLRQIEIARLVGIRPYNALAFTGPIAVFVSVFLLYPLGQSGWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAPTDQPHENFIFPEEVLPRGNAL

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Crispr_ID: NC_019729_34

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_34

3626128-3626262

Orphan

Consensus_repeat	Method
GTGAGGGCGGGTTTGAGAGATTTTCGATTATTGACAAATACTGTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_34

>merge|NC_019729|34|3626128-3626262|CRISPRCasFinder
GTGAGGGCGGGTTTGAGAGATTTTCGATTATTGACAAATACTGTTGGTTAACCCGCCCCTACAAGTCCAGAGGGGATTTACTGTTGGGTGAGGGCGGGTTTGAGAGATTGTCGATTATTGACAAATACTGTTGGT

>NC_019729|34|33|3626128-3626262|CRISPRCasFinder
GTGAGGGCGGGTTTGAGAGATTTTCGATTATTGACAAATACTGTTGGT	TAACCCGCCCCTACAAGTCCAGAGGGGATTTACTGTTGG
GTGAGGGCGGGTTTGAGAGATTGTCGATTATTGACAAATACTGTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015176755.1\|3614633_3614924_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NC_019729.1\|WP_041622551.1\|3618065_3618266_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041623167.1\|3625308_3625914_-\|DUF3318-domain-containing-protein	unknown	unknown	gnl\|CDD\|378716
NC_019729.1\|WP_150111547.1\|3641640_3641745_-\|transposase	unknown	unknown	gnl\|CDD\|376616
NC_019729.1\|WP_015176760.1\|3626293_3627826_-\|Na+-dependent-nucleoside-transporter-domain-protein	unknown	unknown	gnl\|CDD\|224883
NC_019729.1\|WP_015176751.1\|3609387_3610296_+\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NC_019729.1\|WP_015176758.1\|3618680_3624149_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019729.1\|WP_015176762.1\|3628442_3628637_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176752.1\|3610292_3611093_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176761.1\|3628046_3628337_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176765.1\|3634463_3639773_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_019729.1\|WP_150111546.1\|3628755_3628995_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015176768.1\|3643413_3644805_-\|GAF-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_150111544.1\|3624452_3624608_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NC_019729.1\|WP_015176766.1\|3639942_3641475_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015176756.1\|3614939_3616205_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|236009
NC_019729.1\|WP_015176753.1\|3611473_3613864_+\|type-IV-pilus-secretin-family-protein	unknown	unknown	gnl\|CDD\|227133
NC_019729.1\|WP_015176757.1\|3616584_3618060_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NC_019729.1\|WP_015176764.1\|3629035_3633907_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227328
NC_019729.1\|WP_015176767.1\|3642692_3643385_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015176755.1\|3614633_3614924_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.20162e-41
NC_019729.1\|WP_041623167.1\|3625308_3625914_-\|DUF3318-domain-containing-protein	gnl\|CDD\|378716	pfam11780, DUF3318, Protein of unknown function (DUF3318). This is a bacterial family of uncharacterized proteins.	2.30022e-78
NC_019729.1\|WP_150111547.1\|3641640_3641745_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	0.000168517
NC_019729.1\|WP_015176760.1\|3626293_3627826_-\|Na+-dependent-nucleoside-transporter-domain-protein	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.82764e-88
NC_019729.1\|WP_015176751.1\|3609387_3610296_+\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	1.99009e-11
NC_019729.1\|WP_015176764.1\|3629035_3633907_+\|CHAT-domain-containing-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	2.86181e-89
NC_019729.1\|WP_015176765.1\|3634463_3639773_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_019729.1\|WP_015176768.1\|3643413_3644805_-\|GAF-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.07494e-33
NC_019729.1\|WP_150111544.1\|3624452_3624608_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	0.00429945
NC_019729.1\|WP_015176766.1\|3639942_3641475_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.218e-38
NC_019729.1\|WP_015176756.1\|3614939_3616205_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|236009	PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.	1.29338e-118
NC_019729.1\|WP_015176753.1\|3611473_3613864_+\|type-IV-pilus-secretin-family-protein	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	1.87644e-40
NC_019729.1\|WP_015176757.1\|3616584_3618060_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.77955e-106
NC_019729.1\|WP_015176758.1\|3618680_3624149_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0

>NC_019729.1|WP_041623167.1|3625308_3625914_-|DUF3318-domain-containing-protein
MNPEPEIRRLLDVMPASGRMTCKIINKPQQSTVIDCDFPLPWNQSRPIYINFDLWRLLSKPQRDLLILRNVSFLCNVKWFKPDIYQGAALAGIVGTVVELLQGDAIGTAIAGGLTGLAMTRIWRDNRSSQVELDADEGAIRVALRRGYNEAEAAGHLLGAIEAVAQIEGRSLDFNELIRCQNLKAISGISAVGVPDSIRQD
>NC_019729.1|WP_150111544.1|3624452_3624608_-|HNH-endonuclease
MSPPRICNLNARQLNDIDNLALACFHCNRNKSDKTRAIDAQSDVELPGSCE
>NC_019729.1|WP_015176758.1|3618680_3624149_+|AAA-family-ATPase
MIEITKLFLGYHINEQIYAGNRTLVYRGIRSENGQPVAIKLLRNDFPSFNELVHFRNQYVIAKNLNILGIVKAYSLESYHNRYALVMEDFGGISLSSYLSSIASASEEHLEGLPVNEFFPMAIQIANALDGLHRHRVIHKDLKPANILINLVSKEVKLIDLSIASLLPRETQEIQNPNVLEGTLPYISPEQTGRMNRGIDYRTDFYSLGVTFYELLTGKLPFQTDDPMDLVHCHLAKQPLAASKVNSSVPLVLSQVVSKLMAKNAEDRYQSALGLKYDLETCLYQLKQTGKIVNFDLGQRDLCDRFIIPEKLYGRETEVATLLAAFDRVSAGSAEMMLVAGFSGIGKTAVVNEIHKPIVRQRGYFIKGKFDQFQRNLPFSAFVQAFRDLIGHLLSETDAKVEQWKSEILAALGDSAGAIVEVIPELERIIGQQPPVPELAGSAAQNRFNLLFEKFIQVFTTKEHPLVIFLDDLQWADSASLKLMQLLMSDIDKRYLFLIGAYRDNEVFPAHPLMLTLAEIQKNEAKVNTITLAPLDGSDVNCLVADTLNCSTKLAKPLTELVYQKTKGNPFFVTQFLKSLHEDGLIAFNFDSRYWQCDIARVRSLAITDDVVEFVAIGLQKLPLKTQEVLKLAACIGNQFDLAILAIVDEKTQVETASALWKALQEGLILPISEVYKFYQAEGHAESVISNGKCDQLAITNDQLAKYKFLHDRVQQAAYSLIPDDQKRSTHLKIGQLLLKNTPEADREERIFDIVNHLNMGSELITEQAECHELAQLNLVAGKKAKASTAYAAATEYLNSGRELLTINSWESQYQLTLTLHEEAAEAAYLNGDFDRMQRLTDIVLQQAISLLDKVKVYEVQIQAYMAQNKLQEALNAGLQVLKQLGVEFPNSPNPSDIGQALGETAAILSGRRIEDLIDLPQMTDSHQLATIRLLSSIFSPCYFAVPPLVPLVVCKQIDLSVQYGNASVSPFSYAVYSLLLCGVIGDIDSGYQFGQLALRLLSQLNAQDIATKTLHMVPAGVQHWKEHLRNILEPLLSAFSSGLETGDLEYAGYAIMVYSYCSYFVGKQLTFVEREIATYRDAIFKIKQETSLHFQDIWWQAVLNLMGKNPNSWQLKGEVYDEETMLPLYQQTNNYLAIHYLHLHKLILCYVFENYPEAFKSIPPTESYLSAASGQITAAIFYFYDSLVRLAVYSDTPESEQQELLERVQANQEKMQNWSYHAPMNHLHKFYLVEAERHRVLDQKLEALEMYDKAIALAKENEYINEEAVAHELAAKFYLEWGKEKLAKPYLIDAYYAYAKWGAKAKIDHLEQHYPQLLAPILQPDRSRQNPTETTHTSSSESSLSNRDRTLVGSTSSWGVVDLPTVIQASQALSSQIDLEQLLTTLMQVVVKNAGAQTGALILKEEGNWRINVHCTNGQDCLLQSIPVEESEVIPLTLINYVKRTKETLVFDDASTQPRFASDPYTIQHQPQSLLCTPIGERGKMMGILYLENNLATGVFTGDRVAILNILCSQAAISLQNARLYQQSQEYAQKLEQSIQDLKQMQLQLVQGEKMSALGNLVAGVAHEINNPVGFIAGNLQPAQEYVGDLFNLIDLYQEKFPNPGVEIEAEIEDMDLEYLREDLPKLIGSMQEGVERIRNISTSLRTFSRADSDRPVSFNIHDGLESTLLILKHRLKASEFRPAIEVVREYGNLPPVKCFPGQLNQVFMNVLANAIDALEESNKGRSFSEIKALPNQITVQTALSESNNQVVIRIKDNGVGMSAEVKENIFNHLFTTKAVGQGTGLGLSIARQIVMEKHGGTLLVNCSLGQGSEFVISIPV
>NC_019729.1|WP_041622551.1|3618065_3618266_-|hypothetical-protein
MSDLEEIGIHEIASRIICPDATTSCANLTTESGIQWQNSEADCGNSPSQLYFAAHILTITNYELSL
>NC_019729.1|WP_015176757.1|3616584_3618060_+|NAD(P)/FAD-dependent-oxidoreductase
MLDYDLVIIGGTAAGRYAALTATNFPARVALVEPLSNSQDLPTGGKESIDLGLRYSQTLSEAARFAQQIGRQQLGVRWEVANSSVPLKLRFDGVLKWAEGVVSNLSEIDSLGVLAARGVDVISGSGEFVAKPDLAFVVGGRKLRSLCYLLACPTLPTIPNIEGLSSAGCFTSETVAELAKLPELPKSLAVIGADPSGVEVAQTFARLGVAVTLVVKGSHILAKEDREAAGLVQAAMEAQGVRILTATEVTQARVIEGKKWIQAGPRAIEAEEIFLAAGRGHNFSSLNLEAARVKFSDRGVILNEKLQTTNRRIYAIGDVAGGYPFPHIANCEAAVAVKNALFLPLFQIDYRGIPWAIFSDPQLARVGLTEAQARRRFGDDLIVCREYFKNVERAQMCGETTGFCKIVGRRNGEILGASIVGPQAAELIHAIALAVRHGMKVEAIAELPYIWSSFSAINGQTAAVWESQRLGRNTFMQNLWENLFHWRRYWK
>NC_019729.1|WP_015176756.1|3614939_3616205_+|pyridoxal-phosphate-dependent-aminotransferase
MIRPVHGGNLAWAAALAGCPPSAILDFSASISPLGPPESALNAIQAHLSSLTAYPDPDYGELRTALGEALNVDRDWILPGNGSAELLTWAAWDLSKLEATYLVTPAFGDYWRALSAFGAQAIECPLDIKPCTIVKNGEDAHEARDEFSRFTGILPVPKQVIEHGATSQLDLKSLDVGAGNELVTDDLSVSNRSLVSPSLRLPVPLAVDADRRRGLLLNNPHNPTGLLFGREAILPYVKQLGMVVVDEAFMDFLPPSEQETLIDAVEEFPNLVILRSLTKFYSLPGLRLGCAIAHPDILRRWQLLRDPWPVNALAAAAAAAVVRDTVFERQTWDWLPVARRELFEGLANLPGLQPFSGVANFLLVESSMSVSSIQKSLLERHRILIRDCLSFPELGDRFFRVAVRSRADNLRLIAGLAEVIR
>NC_019729.1|WP_015176755.1|3614633_3614924_+|HU-family-DNA-binding-protein
MNKGELVDAVAEKASVTKKQADAVLSAALEAIMEAVSDGDKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATRVPAFSAGKLFKDRVAPPKNAQ
>NC_019729.1|WP_015176753.1|3611473_3613864_+|type-IV-pilus-secretin-family-protein
MKQHLRLSGGLLCSVAGVLIAQAPVLAGPTQVTGVQVSQGNNGVNIVMATEKGDRPQVFAINNGNTYQATIINTQLRLPQGNSFRQDNPAPGISSVEISQVEANSIRVVVAGTNGVPNGQIVPGQGQSIVLSVAGQGGTVQSAQTAPPPPPGLPLSQTAPPPAPQVRTSQNPGVLLPNPEVTITRNDRPPLPSEIQSQTNQAAPFQPRAVAPPLGDIAVSNIAPGVGNIELSSGERIPRLVLRDAPVRDVLALLARAAGLNIAFTGGGAPAQPGQPAVPGQPGASGSDEGPKISLDIENESVQDVFNYVLRLSGLQANRQGRTIFVGTSLPIDSRNIIIRTLRLNQVRSTDAANFLSAQGAETQLPITRVTIQSVGQGNAARDVEIREPDIKAIGAKDGNGPLLLRGLSVLADSRLNSITLVGDPRKVDMAVAFLTQLDLRRRQVAVNVKVIDINLLGDNRSSSSFSFGINNNFFVNDGGVASLNFGGSAPPARPFGNTGGINSRPIVPNPLGTPDVFYDANGRRIVPFTGQGLLGPGKGVFLEPTAPVTNDPTRVGITDYEPGSTTTSGSADFGLFPLFQYPRRFLSALQATIQSRNAKILTDPTLVVQEGETANVNITDEVITNITSQTQTTGNTSTQTVTAVKDRAGLQLGVAIDRIDDNGFVSLRVNPIIRTPGNTQNLSTGPNTNQITLLGERSLQSGLIRLRDGQTLIVSGIIRDEERVTANKIPILGDLPIIGSLFRSTSKTNQRAELIVLLTPQILDDSDRSNFGYQNNISPDARQLLQRSQPVQPRQ
>NC_019729.1|WP_015176752.1|3610292_3611093_+|hypothetical-protein
MTANQFIPSGAQAEETGGQEIFGIKLTPQVQAIGIAVLGLLIAGGLGYQFVFPEFQKKGDFEQKLSESKQTQVQLQTQIQKKAEAEAKQEEAKQRRANVTAMFASDASANTLLLDMTQLVNRINAGVQGDDLKAKITKFEPDMPPAAATAAPGAPDPDILADTSFGPSLAGKLRRKKFKVEFEGTFAQTRNFMRNLELMQSLLVVRNLKSELLASNQPIEVDFVKGKIVPVAQPQTKIKTAFDLHALLPLKQEEKPPTPAPSPGAK
>NC_019729.1|WP_015176751.1|3609387_3610296_+|PilN-domain-containing-protein
MYSLDINFLNDRPDYKPVTVTKSSAKKSSGGAKDQLPIYGAVLFAFGINAAVLGAWWWATHENTNLATEQAAIDQELAKLNSQASTIKAINAETDQVTAEYKALAGVFDQIKPWSAMLQDLSARTPAGVQIGKIEQIEPSPSPVAAAPPPPAATPAASPSPGASPSPAASPTPAAAPPPAVPQQASKVQISGIASTFAQVNDFMLLVQRSPFFLNTDTKLIAATLKNNPAQLQVRNQNAAPAELPKLRPVVEYKIETTLSPTGASELLPELRSKQADGLAIRIETLQEKGVLEPQKPEVKKQ
>NC_019729.1|WP_015176760.1|3626293_3627826_-|Na+-dependent-nucleoside-transporter-domain-protein
MSIYNLISFLGIFGLCAIAWVFSENRKVQYIPWRVIIWGIGLQLVLGFLVFLFPPTRLALEWFTSLLDGVFTAADFGARFVFGNNIVPIPGKDPEVNLGYIFAFRALPTVVFFSGLMALLYNIGVIQIITELFAKIFYMTMRLSGAEALSGAANIFVGIEAAIVVKPYLPQMTRSELCAILSCCFGTAASSTLAIYVSYLKPVFPNILGHLVSASIIAIPACFVLSKILVPETGVPVTMGGIPKGEPKPKGREFVGDEIAENDGEVREQETVGGEPIERVSPLDAAIIGALDGVKMSVSIAAVLILILGLVSLINQVLGASTLTKIEGTLFYPLTLLTGVPFEDSWEASVIIGRRLLETAIPPYRSLAEAAAKGEVSDRTVLIVSYALSGFAHLASVGIFVGGTIALIPSRRKDISELGWKALFVGTLATMMIACIAGTFDTGDASILGAKTAPAAPLTAPDSPKPSASPTANSKPSVAPAIASPKPSPNAEKVAPRTQESPSSESKKNP
>NC_019729.1|WP_015176761.1|3628046_3628337_+|hypothetical-protein
MEAFAPHPPEWTATAVHANEFCCPKCGASCTNAADVWINRRSPVYTEFNRRKWQEFYRCQCDCVWWAWSNDRPPSELVRRDRSSDEGPDDGPDDDF
>NC_019729.1|WP_015176762.1|3628442_3628637_-|hypothetical-protein
MQTPAFPFLTEQIVERIFSSGELTRDDRQRIQSMLLNESIGDKELSLIERVMEGVVKGILDVMN
>NC_019729.1|WP_150111546.1|3628755_3628995_+|hypothetical-protein
MSIHSLQINTKFALNFRHSGNGWFWSAIDPGGGGVRSTFSSLLALWRNITAQKKSKREEIRIGNGELAFLNSLFLPAND
>NC_019729.1|WP_015176764.1|3629035_3633907_+|CHAT-domain-containing-protein
MTYFRSALILTLGFGLLPLAVRSQPVVPAADGTNTVVKSDQNRTDISGGQLSGNGANLFHSFSQFNLSEGQIANFLTNPNIQNILGRISGDNVSVINGLISVSGGNSNLFLMNPAGIVFGQNARLNVPGSFFATTATGIGFGDRWFNSAGINDYKALLGNPNQFNFNNSQVGAIVNAGNLAVGSGQSLTLLGGTVINTGQLSAPNGQVTVAAVPGQNSVRISQVGNLLSLEITPSLQSEKSALAPVSLPQLLTGPGAASATGLTTNEQGQLVLTGGQTVSAVAGSAIVSGSVNVFGLSGNAGGTVNILGEKVGLFGANINASGTDGGGTVRVGGGFRGMEPVPNALVTYVSPDSTIAANAIDRGNGGTAVIWSDNTTRFFGNISARGGIAAGNGGKVEVSGKNALTFQGEVDTRATNGAIGNLWLDPANITIVSGNGDTNARSTGGELEPAPQPNETSISELQLEQMAAGSNVVLDTPGYITLQDLPDNQLSLQARTGDTVTFRAGGVFFVNDSKDSIETQGGNINIFASSISLGGLNANGGNIALTGNGIDLRGGSNSVSSAGGTIRLQPNDSRAIRIGGTGDILGILDLTATDLGALAGGFGSIAIGRENGSSSSIAIVAPITFNSPLTLQGSSIAIDHPLNTSGSASLTLDAPQTDLGANIATSGADLTFTGNASLNADVALSAEVTGSILFSGSLDGSRALRLDAGRVLFGATVGQAAPLASLTVNARSTEVSGNIATSGDMTFNSNVTVDRTAALAATTGNIAFANTLDSTPGRANNLTLRAGGNITFDGRVGQTQRLGRLSADAASVTAASTIAACSLSVNARDSATFGGDSTTALGADIKAGNVLLEGNFRTDGGSVNLQGSREVRTGNITSNGGRIRVEGNTVAAGAIDSSSAGTGGAIALQTNAGPLTAGALNASGAIGGNIAVTSSSGISALDLNSSSTSNGNGGGVSLSATDNIQLGSINAQGGPGGAGGSVDVTTPGLFRSNNVFNDISGNSSSISTAGGAGAGRIAIRHGGGIDRPFVVGGAIDNGTLGSINAGAGNAILPSLAFGETYTQGSLPNQISLITPGAPSTPAPIPPPIPPPIPAPIPAPIPEPIPAPPLVPVVPVNPDPAQSLPASLQVELRSQSRYKTPEISPDIFAPSRRLDSAGSGVLAFEEIFTREYEKYLDLPARTPISNMSVIYETLRKNEQITGIKSAIIYMNWVSGSAAAAKENGSVLVASQDLSNLLPVRKHLASQPPHPLEDKLTQRLQPDGKEVSDVPNGEHLELVLVTANAQPQRVLIPATTRWQVLQLADALQSEITNPRKRSSISYLDTAQKLYRWLIAPVAAELTALKIDNLIVIPAAGLRSVPFVALHDGKGFLVEKYSISVMPSLSLTDTRYDNIADDEVLAMGASVFEDKAPLPAVPVELESIAPPSEGKSFLNQDFTLGNLQAQRANRPFGIIHLATHSEFQPGEPKNSYIQLWDTKLRIDQMRQLRWNEPPVNLLVLSACSTALGDEEAELGFAGLAVASGAKSALASLWEVSDEGTLGLMTEFYRQLRAPRRGGNLMIKAEALRRAQLQMLQGRVRIQDGMLRVEGLSGSLILPPEIAARGDRVLLHPYYWAAFTMIGNPW
>NC_019729.1|WP_015176765.1|3634463_3639773_+|AAA-family-ATPase
MINLAGYEITNQIHESNNSLVYRGLRKQDNQPVILKFLKQDYPMPASLVRYKQEYEITRNLHLESVPQTYSLERYHNSLAIIFEDCGGDSLKLLLASHQLTLEEFLLIAIKITRALGEIHQHKIIHKDINPSNIIINSTTGRVQIIDFGISTVLKRENPTLKNPNVLEGTLSYISPEQTGRMNRAIDYRTDFYSLGVTFYELLTRQLPWDYSDAMELIHCHIAKQAVPPHQINLEIPKAVSDIVMKLLAKTAEARYQSPWGIIADLEECLEQLKTTGAIADFAIAQKDITDKFQIPQKLYGRETEVETLLAAFERVSRGSTEMMLVSGYSGIGKSALVQEVYKPITKARGYFIAGKFDQFQRNIPYAAVVKAFQSLVKQLLTESENQLNTWKQKILAAVGANSQIIVDVIPEVELIIGPQPAVQELGATEAQNRFNLVFLKFIRVFCSVDYPLVIFLDDLQWADAATLKLLQVMIADEPTNYLFLIGAYRDNEVNPSHPLMMTLDELQNQGARIERITLAPLHLHQISNLISDTVRKDQKSALPLAELVVSKTQGNPFFVNQFLKTLYQENLLRFNFQERNWDWNISEIESVGITDNVIELMLGKLKRLPASTQQVLRLAACVGNSFDLNTLSIINEKSWATTFQELLPAIQEGLILTTSELGAAESEIINSDLVITTYKFLHDRVQQSGYALIDSQLQTAIHLQIGRLLLANISPERRAERIFEIADHLNSGRNLIVDEHEKIELAILNLTAARKAKDATAYAAARDYLKIGREILPGDIWQDSYELAFTFHKELAEAEYLNGNFEESEALIKVAFARAKSELEKAEIYNILIVQYTLLSKYEAAVQSGLKALHLLGIDLAEDNLSEAVNAEMAAATACLANQEIASLINAEKMKDPAQLMAMKLLGNMGPLTFFSSQELWKLTVIEAINLSLKYGFVAGGSYCYSCYGIILNSILGNYQSAYEFGRLALTLSENSNNLSQNCQDSVIFANYLNCWVRSLKTTAQINNEGYKVGLQSGNLQWTGYNRMFQTITYFFQGMNLNNLLEDIGKSLHFCYHTKNLWAIDIIIANKIAILNLMGEEDEVSEKQHLENFHERKSMAALCEFYVLKAQNLYLDEQYSEALEASERAAGLIDYLMGHISSAHHYFYRCLILTALYSEVSESERKDYWQQLEANQKLIKVWADNCSESFAHKFSLVAAEMARISGRDLEAMDLYDRASSEAREGDFIQNEALAAFLAAKFWLGKDKEEFAQIYLTKAHYGYQYWGAKRQVEYLEEKYPQLIARISGKTTTQTKVNRTTTATTSNNLGETLDLATVMKASFAISGEIVLSRLLERLMKIAIENAGAQKGFLILEKAGNWAIEAEGSVQEDEVSVLRSLPLNAEAASGGTPLLACAIANYVIRTQENVVLNNAAQEGQFTRDPYIAATQPKSILCTPLLHQGKLTGLLYLENNLTEGAFTTDRLELLKLLSSQIAISIENAQLYKNLQDFNQNLEQLVSDRTQQLSNTLEALKATQTQLVESEKMASLGGLVAGVAHEINTPIGVGVTVASALAENTTEFVSIYKSGKMKRSDLEEFVDIATQSSKALLINLERAAALIQSFKQVAVDRSSEERRTFQIRPYLDEILLQLKPKLKNSQHSLKIKGDSKIAITSYPGALSQVVTNLLINSLIHAYEPGLSGEIIFDWEQEDNRLRFEYADEGKGIPPENLSKIFEPFFTTKRGQGGSGLGLHIVYNLVTQKLKGEIECLSEVGRGTKFIIKLPMQIDSQM
>NC_019729.1|WP_015176766.1|3639942_3641475_+|hybrid-sensor-histidine-kinase/response-regulator
MKSDFDDLLTKPSPETVFFAEGLDSDDEILFADETTEEKLSESWKILVVDDEAQVHTATEISLRKFVFENKSLTFINAYSAREAKQLIQENPDVAIILLDVIMETDDAGLNFVKYVREVLGNQLVRIILRTGQPGQVPEKSIIINYDINDYKTKTELTTSKLYTTMLTALRSFSLSQNLLSEIERREQVEKALRISEEKEHQKSVALEHFVKELQETQLQLVQSEKMSSLGQLVAGVAHEINNPVNFIYGNLSHANDYIKELINMLNLYQRHYPQPAAEIIHEIEDAELPFIIDDLPKLLSSMQLGIERIRNIVHSLRNFSRLDETEIKSVDIHEGINSTLMILQHRLKAKSDRPAINVIKDYGVLPLVNCYAGQLNQVFMNLLANAIDALEERLSREDGAVFHPQILIRTEVVPGSSHDNISSASHILVTITDNGVGMTDNVHAKLFTPFFTTKPAGKGTGMGLSISRKILIEKHCGQLECISTPEQGTQFIIDLPTICRATNIAVANA
>NC_019729.1|WP_150111547.1|3641640_3641745_-|transposase
MQFTTYTWNMLYFYRTVGNASEEIVKKYIENQHN
>NC_019729.1|WP_015176767.1|3642692_3643385_-|hypothetical-protein
MKHLHLFDKIPNFSNSLEFFKKHFFRVRFLAAFNILTVLILGGLSVYAKLNNQGDGVERLFSDPFNFWFPYEGILTGVSEVLWCIPVAICAFTFGVLRQKNPRSRSAIFLFFSALLLGVFFLDDRFRMTLIISRLGISKKIIYFCYGSAVFLYGVKFWRYIKTTPYLPLVAAFLLFAISRFEDMLNLQNQGVHAMLEDGTKLLALLNLALYFWHVCHQEVWRYLQETEAR
>NC_019729.1|WP_015176768.1|3643413_3644805_-|GAF-domain-containing-sensor-histidine-kinase
MLMPASSEFVKLCRSQVAIAVSLGAKFSAVYLTQELVEGSEAKLVPIAVYPETSAESEENQGLRLQSSESSTVKPVPRLLAQPVGAVEESTVGAIAPEPLPGNERSSHQCQGPENVWQQRRQIVTPLIHEGAVMGLLVSGRQDRPWNEREEAQIQQIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLARRLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHLKLRSGTSEKAMSKVESIRHSPLSLSPAANLEESCFVAEVLKPLLISAEAIASERNLKLVADIEANLPPVSANDRALREVLSNLIDNALKYTPAGRQIYIKVRYKAADGDRAGYSQLPAIAVAVSDTGSGIPPQDLEHLFERHYRGEKAQTEIPGTGLGLAIARDLVRQMQGEIEVFSPVNPEWLPSSETHLYPTDRGTTFVVWLPVNK

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Crispr_ID: NC_019729_35

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_35

3971113-3971243

TypeV-U4

Consensus_repeat	Method
CCTGCGCGGGCCAATGCCCGATGCCCAATTCCCAAT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_019729_35

>merge|NC_019729|35|3971113-3971243|CRISPRCasFinder
CCTGCGCGGGCCAATGCCCGATGCCCAATTCCCAATTCCCGATTGAAGCCAGAAGGAAGAAGGAAGAGGGGAAGAGAAGGAGATAGGGAAAATTCCCTGCGCGGGCCAATGCCCGATTCCCAATTCCCAAT

>NC_019729|35|34|3971113-3971243|CRISPRCasFinder
CCTGCGCGGGCCAATGCCCGATGCCCAATTCCCAAT	TCCCGATTGAAGCCAGAAGGAAGAAGGAAGAGGGGAAGAGAAGGAGATAGGGAAAATTC
CCTGCGCGGGCCAATGCCCGATTCCCAATTCCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177024.1\|3973242_3974208_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NC_019729.1\|WP_015177013.1\|3951623_3954719_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_019729.1\|WP_190274431.1\|3956203_3961057_+\|response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_019729.1\|WP_041622580.1\|3979492_3980620_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NC_019729.1\|WP_015177017.1\|3962732_3963110_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177027.1\|3976626_3977049_-\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|225083
NC_019729.1\|WP_015177026.1\|3975720_3976155_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NC_019729.1\|WP_015177018.1\|3963707_3965861_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_019729.1\|WP_015177011.1\|3949582_3950665_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_019729.1\|WP_015177014.1\|3954859_3955678_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NC_019729.1\|WP_015177016.1\|3961356_3962670_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|129116
NC_019729.1\|WP_015177028.1\|3977558_3979232_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|381113
NC_019729.1\|WP_015177023.1\|3972398_3973031_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319799
NC_019729.1\|WP_015177010.1\|3947885_3949124_+\|DUF4388-domain-containing-protein	unknown	unknown	gnl\|CDD\|381129
NC_019729.1\|WP_015177025.1\|3974417_3975380_+\|Orange-carotenoid-binding-protein	unknown	unknown	gnl\|CDD\|370323
NC_019729.1\|WP_190274220.1\|3976423_3976594_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177020.1\|3966308_3971009_+\|helicase	unknown	unknown	gnl\|CDD\|223627
NC_019729.1\|WP_015177021.1\|3971282_3972110_+\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|226729
NC_019729.1\|WP_041623211.1\|3950942_3951476_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NC_019729.1\|WP_041622578.1\|3972179_3972365_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177024.1\|3973242_3974208_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	3.02368e-121
NC_019729.1\|WP_015177013.1\|3951623_3954719_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.20718e-71
NC_019729.1\|WP_190274431.1\|3956203_3961057_+\|response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	3.50447e-164
NC_019729.1\|WP_041622580.1\|3979492_3980620_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.98069e-48
NC_019729.1\|WP_015177027.1\|3976626_3977049_-\|anti-sigma-regulatory-factor	gnl\|CDD\|225083	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].	1.52178e-24
NC_019729.1\|WP_015177026.1\|3975720_3976155_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.54199e-07
NC_019729.1\|WP_015177020.1\|3966308_3971009_+\|helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	1.2065e-99
NC_019729.1\|WP_015177011.1\|3949582_3950665_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.94868e-30
NC_019729.1\|WP_015177014.1\|3954859_3955678_+\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	5.42758e-08
NC_019729.1\|WP_015177016.1\|3961356_3962670_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	5.74098e-56
NC_019729.1\|WP_015177023.1\|3972398_3973031_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319799	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ. Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.12553e-69
NC_019729.1\|WP_015177010.1\|3947885_3949124_+\|DUF4388-domain-containing-protein	gnl\|CDD\|381129	cd17602, REC_PatA-like, phosphoacceptor receiver (REC) domain of PatA and similar domains. Nostoc sp. (or Anabaena sp.) PatA is necessary for proper patterning of heterocysts along filaments. PatA contains phosphoacceptor REC domain at its C-terminus and an N-terminal PATAN (PatA N-terminus) domain, which was proposed in a bioinformatics study to mediate protein-protein interactions. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members of this group may have an inactive REC domain, lacking canonical metal-binding and active site residues.	3.34033e-40
NC_019729.1\|WP_015177025.1\|3974417_3975380_+\|Orange-carotenoid-binding-protein	gnl\|CDD\|370323	pfam09150, Carot_N, Orange carotenoid protein, N-terminal. Members of this family adopt an alpha-helical structure consisting of two four-helix bundles. They are predominantly found in prokaryotic orange carotenoid protein, and carotenoid binding proteins.	1.11901e-90
NC_019729.1\|WP_015177018.1\|3963707_3965861_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_019729.1\|WP_015177021.1\|3971282_3972110_+\|SWIM-zinc-finger-family-protein	gnl\|CDD\|226729	COG4279, COG4279, Uncharacterized conserved protein [Function unknown].	3.63255e-87
NC_019729.1\|WP_041623211.1\|3950942_3951476_+\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	3.71644e-29
NC_019729.1\|WP_015177028.1\|3977558_3979232_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.45185e-56

>NC_019729.1|WP_015177020.1|3966308_3971009_+|helicase
MAILHGSWLLDNEKSCLFIWGETWRKIEAIQTLELGNNLPHPLAMTESEFKIFLNSLQQSGKLNWQLPETAENPPEKSKKTRRSPKTPKEEIPAPNSSIKKEVRAIALPTHIWESNSNLMPQHSAAAIEEPAKTEEIYLYPWQVEGFCLNPQAAFVFLQSLPLNSTEPDSFVGSDLRFWSHIARWSLDLLARCKFLPGLEKQSDGSAIAKWQPLLDSSTDTLRLATFVKQMPTACRTYQSKEEGRRKKEEGRGEKEEESSQLPLAVDLPMGAEELVLGFLSSIVDSQVRSAGSSTLELKAVSPVRDWLQALHQESGIVQVETAALENLATKLSAWTAPLQNQLSQQSQFRTCFQLIPPVPGKANWSLNYCLQAADEAEFLVDATTVWNNSVERLAYAGRTIELPQETLLSGLGLASKLYPLIEPSLQAQRPQSCQLNPLQAYEFIKSVAWRFADSGLGVVLPPSLTKTGGWASRLGLSIQAETPKVTPGKGGLGLQSLLNFKWELTIGGQRISKAEFDRSIALNSPLVEINGEWVELRAPDVKAAQTFFASRKEQMTLSLEDALRLASGDSQTIEKLPVVNFEATGQLQELLNTLSDNQAVSAIATPASFRGQLRPYQALGAGWLAFLERWGLGACLADDMGLGKCLLPQSLLFVNGFLQKAEKIWEAYAGKTEFDGEGFWSEPNEQLLVNSINQETGKIVQAPIRRLYRQPVQEKLRTIKLQDGSSITITGRHKLLGRDGWTNDLKVGDYVCVPAKLYWEGKPEDPDLVKFLAWQIAEGHEQRDRATLTITQKDVAVIEELRFTLHQLSKKYGIEINNPAVRTPGKQRAAYLAVCSRSYQSFLQAKGYEWGKLSAEKSFPQFIMQANLDSIRIFLRNYFDAEGSVLPKMRTVEISTASPLIIQQLSTLLRRFGIWLRIATKQKRATNGSGIFRTYYIGAFGGNSARIFLQEIGFGYPEKQQNLEKICEVTANTNVEGIPVSDIVADAVEMTKLPLRHFGMHNPVYINGSQQFSRISLGKVVAGMENVLGGSAEQEYRQLKPSKWTNQTLEAYANLNVAQLNSVRENLQLILDREVFYCRIEEIENFEYSGWVYDFEVSKHHNFVANNILCHNTIQLITFLLHLQEQDSLEAPTLLVCPTSVLGNWEREVKKFGPTLKVLVHHGDKRAKGKAFAAEIKGKDLIITSYTLVFRDAKEFQGIKWQGLVLDEAQNIKNSEAKQSQAVRQIEASFKIALTGTPVENRLQELWSILEFLNPGYLGPRNFFQRRFAIPIEKYGDRESLQTLRSLVRPFILRRLKTDKEIIQDLPEKQEMTVFCGLATQQAALYQKIVEESIAELESAEGIQRRGMILALLVKLKQLCNHPALVKAEAKPKELEIKSQESGKLQRLVEMLEEAIAEGDRALIFTQFAEWGKLLKPHLEQHLGREVLFLYGGIRQQQREEMIDRFQHDPQGPPIMILSLKAGGTGLNLTRATHVFHYDRWWNPAVENQATDRVFRIGQTRNVQVHKFVCTGTLEEKIHDMIESKKALAEQVVSAGENWLTELDTDQLRNLLILDRNAIIETEEE
>NC_019729.1|WP_015177018.1|3963707_3965861_-|polyribonucleotide-nucleotidyltransferase
MVEIDKSISFDGRDIRLKIGLLAPQAGGAVLIQSGDTAVLVTATRSQGREGIDFLPLLVDYEERLYAGGKIPGGFLRREGRPPEKVTLTGRLIDRPLRPLFPSWLRDDIQVVATTVSMDEQVPPDVLAVTGASVAILLGKMPFYGPMAAVRVGLVGDDFIINPTYSEIKEGELDLVVAGSPDGVIMVEAGANQLPEQDIIEAIDFGYEAACDLIQAQREIMAELGIDLVVEERPSLDSALENFIRDRAQEPIRTILSRFEKDKTIRNAALDEVKANAVEAAIAELPEEDPVKLAATANTKAIGNVFKDVTKKIMRQQILEDGVRVDGRKLDEVRPVSCRVGVLPSRVHGCALFNRGLTQVLSAATLGTPGDAQDLGDDLHPQQDKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERALLPVLPSKEDFPYVIRVVSEILSSDGSTSMGSVCASTLALMDAGVPLSQPVSGAAMGLIKEGDEVRILTDIQAIEDFLGDMDFKVAGTDTGITALQMDMKIKGLPLDVIATAIRQAKPARLHILERMLATIDTPRKEMSPFAPRLLTLKIDPEFIGLVIGPGGKTIKAITEETGVKIDIEDDGTVTIAGNDSEKAQRAYNIVQGMTRKLNAGDVYVGRVTRIIPIGAFVEILPGKEGMIHISQLADYRVGKVEDELAVNDEVIVKVREIDNKGRINLTRLNIHPDEAVAAREALNK
>NC_019729.1|WP_015177017.1|3962732_3963110_-|hypothetical-protein
MPKRLIVFKTESLSSPGWEDRLLSHTGALTSILAEHYDYSNKPLPQTGDRLRNFAQFKESADPKSPAASTHVRWGDWEVSRVEEYRPEIPNAEYDCLAVCYCCYSPIEPEWKELPKIQVSQLQKH
>NC_019729.1|WP_015177016.1|3961356_3962670_+|pentapeptide-repeat-containing-protein
MKAEELLERYAAGQRNFQKADLREENLKGADLSGIDLYGSNLSGADLSEANLTLVNFNSANLIKASLTNANLSSLVGASSANLGWADLSGADLSWANFSSATLNYANLERGTLTGANFNNAKLFGVNLDEANLSSASLDSADIRVASLHKANLSKANLNKADLTEAYLVEADLTLANLNEAILTSAKLQKAKFQKANLHKVNLSRMNLTKANLEQAKLDSTNLKYACLQGANLERANLRSSNLTGANLIKANLKRVDFSWCDCYGWDIENADLTGAIMPDGEIYQPETSDGELYQPETSEKLFQKMTSMTRKIIRTDKAPAPVGPYNQAIAATGTMLFVAGQIAIDIRLNDIVYTDDVAKQTEQVMANIEAILTAAGATWLDVVKTTVFLKDMNDFATVNAVYGKYFDEATAPARACVEVSRLPKDVLVEIDCIAVI
>NC_019729.1|WP_190274431.1|3956203_3961057_+|response-regulator
MAGIGVGAFASSRSFPDSPSVYAPDVRETEDSALQLVFDSDVPARMRELLQEFKQPEGPESRRQLKNICQNLLGTGEQFELPCWIELIQAVSKAIANPENTYRTLAPTVIKDIKQAQELVISGLESSIVPSAKLLSLLPAVQVPETDFEDLLAFAQPSKSGTNVVSVEDEAWELVGSGDVPDGLNKLLPTISGVSIDELFDQLDSGDSNDDSGIRSAQFDEDSAFAESDIETSAFRGSTRTGPEVGAAELNTLADLFDGESPDLDGAWEEEEDLDYAQSSGISAGMLGSDDDNSGDFTDLLFDEYDDTESSETKTTPPIDDLTSLFGEDVLFGEEAEGSAVAAGQTNAGSSQGLTRQQLKTGNGRGGERRDDTAAPARGQADEDALGTLLDEVAAQTSAGVTDNADFDNLFGDLGLSEATGVPAVSSEYSLKSEALDGESQEPAAGGGNSDSADAEALALPVMDDFESISELGEDSDLSELLGITSNFLSSEDEGEENAGDRDRVAGIAQNEERGNVLNMTSNSDLDISADENWLEDAFGMEDESVQSLNLDLDDTDLDALFGDMTSGAISEDEQTVRDRQGATTSREAADLAELFGSVPTGTEYDGEASGQALGGWPNDGNSELLSAGVGVDEGDLGSLFENNGAAVSDQGLTNSAEVEFGALSDDRPESEISNVESDEAAAFDFLEDMFGEGMVHPGDAGAAPDDGATVDVKELSAQPAGDLFDELGADLFDRAEIDVAGESEGEDDLFNALETDFLSADLEPLPAESLDGMFEGDADLLSAMETGATLNNSILMGFDDLLDSIDAEVLVTSELTTGFWDAEDESAQPDSSELEEGSLADFFGEAESGDEDAEEGNFDDLEALLIAGGAGAVIAASGSTNQSPVNTEVFSDLEELLSESATMPEIHGLPATTASKAPRAAADESDDEFGDLEKLLEEPKDGGRQGEGNMGPSAINRPRRNARAGGFGDQTMRVPVKQLDNLSNLMGELVVNRNSLEQDQERMRQFLDNLLHQVTLLSDVSQRTQDFYERSLLEIALLANRQGHRSGWRSEDAAPTRDSTRDSAWRPEEMDRFTPFHSLAQEIIELIVRVRESAADIEFLVDEADQVTRQLRQVTTQLQEGLTRARMKPFAETTDRLFRAVREIAIKCGKQAQLQVEGKDILIDKMIVDQLYDPMTHLVNNAITHGIEAPEVRLAAGKPAVGRITIRAFHQGNQTVVSVSDDGAGIDPQRVKAKAIKQGMLTAAQAQRMSRSEVYDLLFMPGFSTQEQATEYAGRGVGMNVVQTSLQEIRGTVSIDSTIGKGTVFTIRLPLVLSISKALTCISDRARIAFPMDGVEDMIDVPRDQVTTGADGLPCIEWRGQSLPFRPLRDLLAYSRHLGRGSVYGFNTDDDMISVIVLRSAGNFLAVQVDQVSTEQEIVIKPLEGPVPKPIGIAGATVLGDGRIVAIADVLELIDLATGRLRKDTGGTLWDEGDRAAAEAEIEKTEPTVLIVDDSITVRSLLSITFEKSGYRVEEARDGKEAWEKMKSGLPCDIVFCDIEMPRMDGLELLSRMQKDAVLCELPIAMLTSRGADRHRQMAYSLGAKGYFTKPYLEEQLLDAASRMLKGEVVGAPVGV
>NC_019729.1|WP_015177014.1|3954859_3955678_+|HNH-endonuclease
MDDNIVEVIPGIFGEVQPTGCIISTLTKSSSGYANKRLRINGEWKTFTVHRLVLENILGRPIRSEYFACHTCDVRNCINPNHLWEGSRLENSQDRFKKGRIKDVGITSAPQPQKQVRGLEVIPGIRAEIQQNGCMICTLAKRSDGYAIKGTKINGQTKSFYAHRLVLEHKLGRPVKPGYFACHSCDDRGCVNPDHLWEGTPADNSRDAIEKNRFPFVPGKICPNRKLKPEQVREIRYLLSEGISKRKIARTFAISRSQIILLARGEIYRELL
>NC_019729.1|WP_015177013.1|3951623_3954719_+|HAMP-domain-containing-protein
MATSTNFQQDYQRAEAAYMDGNYSEAAALVYQLVEDFPEDPSARLLCGHIYCYGLQQYEVAREQYTVVLGLSDDQSLVEHAHSGITYTDQFLSGELQTENFEALSAETELEFYPDLSLDEGLEDPDLGLFQGNSPSLSYRSQSPDEMENEDLADLGMSGLEWEAEDDDRAGSVPEDLASHSNPFGGDSGGMAAYAETSDSLDIDEFAGSDFGDPFVLDDGGFDAADVSSSKLSAKSAPYSGDSFSEAPTQMLNGQSFASSESGNSFDSNQLDSPIGPSDNFGEPFAALDLPGEFDDNSDYDYQSPPLSGQNYGHNAPGPEEEDPFAEAMPSSGFGSSRPQNKQPNNGSDYSSNYSLAEDETLLMGGAVPNSHSSRSSRGQFNSVDSASANSNGYSDSEPPAFGSRDNFELDAFEDDAFSDSFSFDENEQATAFGASNKNSSAWSSKTGNAQEHSDFLDEFDEFDDFGNLPDFDISEDATSSILTRGNTNFGNSTSGMMGTTGSSLDFDNSDGSAIRDDEIFSINGPADASVPTFSPSETEAVDTSVTVEQGGLAFLENAPLFTKQLYTAIGAGLVSLVAVAFVTNIASYQALRQDKPEAIVYLRQTGWVMTAAAGFTSFLTSWGIGQLIARQVRKSSDNLQAQFDAVSQGTLDARATVFSEDEFGKMAAKFNHMAKVIQTTISDTRRKSDEQEQAKEDLQRQVIRLLDDVEGAARGDLTVTAEVTADVLGAVADSFNLTIQNLREIVHQVKQAAREVSKGATDSAKFAGDLSSDALRQAEELAATLNSVQVLTDAIQRVAESAREAEEVARGAAATALKGGEAVERTVAGILEIRETVAETTRKVKRLAEASQEISKIVALIATIASRTNLLALNASIEAARAGEAGRGFAIVADEVRQLADRSAKSLKEIEQIVMQIQSETGAVMTAMEEGTQQVIEGTKLAEQAKRSLEDIIQVTNRIDVLVRSITADTVEQNETARAVASVMQAVELTAQETSQEAQRVSGALQNLVGVARDLLTSVERFRVETAERQ
>NC_019729.1|WP_041623211.1|3950942_3951476_+|chemotaxis-protein-CheW
MSGSPDFILPGLGVDPAPEFQELETPEGELHLRFYVPSGNEFALPATGIREVLSPSPDRMTPIPNVSSLLLGTLNMRGRVIWVADLGQFLGDQTPLNTDRPEIPIVAVEDQDTILGLAVDRIVGMAWLDVEQLHSQNNAPDGMIPFLRGEWMLGAPAQKVLRLLDQVKILRSARWAA
>NC_019729.1|WP_015177011.1|3949582_3950665_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MFAVKRALKLNNNEATLMAKHAGWRRVVFYCGLSLRTQIYSEGKLSDSKVLKEVKKVLTNHVKKQAEFAWMNQLSSRVYQNALIDLKDAFSRYRAGKAGHPKFASRRHGQSFRVDSFNGKVLLSAGKTIKIPRLETFRLYEPLECGYVSQTFTISKEGSRWLVSFCVDAERLPVQQPKSSVGIDVGIKSFAMLSNQQVFDAPKPLKARAKTQLATLQRQASRQVKGSNNQRKTYNKSRRLHAKIPRIRLDLLHKLTTYLAKTFKLIKIEDLNIKGMMANHKLAGAISDLGFYEFKRQVDYKCKMYGANLVLVDQWFPSSKTCSNYGSKKDMPLGFRTFDCPACGRSVDRDWKARVNIFNS
>NC_019729.1|WP_015177010.1|3947885_3949124_+|DUF4388-domain-containing-protein
MQGNLSEIDIRSILQLIELGQRTGELFVEAYTSTGSSTGTQPTPRSLAGQSWYVFCFNGQIIYATQSAGSLFRLRDYLRRYKADTALDKIQVPYMASTNAPEYGYLWVLLENHILTPAQGRNIIQSMIHETLFDLLSLHQGSFTFEMGPALAPQLTSLEISSLLAKIVKQVQQWKQFHPHIQSPNQCPVISDPSELRVALPVNTFNTLRRWADGHTSIRQMARYLNRDVLTVAKAIYPFVQQGLVQVFYEPSVAPTSNKKEWSSPETKVPRVVCIDDDNTIRKTVESILNEHGYEATAIGNPLEALSLVFQLKPDLILCDIAMPELDGYEICAMLRSSSAFRQTPIVMLTGIDGFIDRVKARMAGATDFYTKPFGESELLMLVEKYVGPGYPRVNLSERLLDRSLEDQLEEK
>NC_019729.1|WP_015177021.1|3971282_3972110_+|SWIM-zinc-finger-family-protein
MIDREWWTQQWLDLINTYRFKKRLERGWQYAREGKVLSIKFPNQEVIAVVQGTDPKPYQVSLGLDTLSDEDWDYVIENMSQRAVFSAKLLAGEMPHNIEDVFAAAGKTLFPLSLSDIRSRCSCPDPKNPCKHISAVYYLLGDRFSEDPFVLFQLRGRTKEQILTALRQRRGTQGEENSQLNSGENAPAANSKLPKVDRFWEYNQQLEPSLVVIVPPPSSETVLDILGPIPLTADGKGTASKSSPASEALKQHFAKIYQAVSQQAVLAALKRGEGD
>NC_019729.1|WP_041622578.1|3972179_3972365_+|hypothetical-protein
MKRNQVAKVATAKSEAKLKVKKVSNADIRLFQLGERRNVAINFYISIDRAFQPIAHKVFNA
>NC_019729.1|WP_015177023.1|3972398_3973031_-|HAD-IA-family-hydrolase
MTKVIIFDFDGTLADTIDILLSITNRLSVEFGFKSATKEELAQLSNLNSWQILMYSGISIFKFPLLIRKLKAELRSEIPNIHLFCGIKEVLLELKNSGFQLGIITSNSRDNVLDSLEKNGLQDTFDFIYSGTTFGKHKVINRWLNKQNINPEQVVYVGDEIRDIEAAKKTKIKVIAVAWGFNSRSALAAHNPDFLIEHPQELIGVINNMK
>NC_019729.1|WP_015177024.1|3973242_3974208_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MKKSINSDRIKQKALELGFHKVGIASTDTDFDLEKQRLQAWLDKGYQADMAWMANPKRQDIRSLMPEVQSLICVAINYYTPHQRPENSLCEGGDDAAVEYAKISRYGWGRDYHRILHKKLKVLANWLRSQGEGIEARYYADTGPIQDKMWAQRAGIGWIAKNGNVISREYGSWVFLGEILTNLELASDAAHTEHCGTCTRCIEACPTGAITEPFVVNADRCIAYHTIENRAEKLPDKIASNLQGWVAGCDICQDVCPWNQRFAKATDVAEFEPYPENIAPTLAELADISDEEWNRRFTASALRRIKPEMLRRNAKANQIND
>NC_019729.1|WP_015177025.1|3974417_3975380_+|Orange-carotenoid-binding-protein
MAVSIQSAQSIFSNTEIASIVPATTDAFYKLSVEDQLALLWYAYTEMGVSITAAAPGVASMTLVEGVLNDIKQMSPAEQSKTMYDLASNADTPIGRIYTSLRVNTKLGFWYELGQLMKQGIVAPIPAGYQMSPEATAVLETIKKLDPGQQITVLRNTVVHMGYDPDFSQEYGKRFAPRSTPTALEERVKTKIEGISEQTVLSYIDYMNAFDFTPAVGLFAEEGALQPPFQKPIVGREAILNYMREECVGLKMMPERGVSEPAEDGYRQVKVTGKVETPWFGANVGMNIAWRFLLDPQGQIFFVAIDLLASPKELLNLIRK
>NC_019729.1|WP_015177026.1|3975720_3976155_+|nuclear-transport-factor-2-family-protein
MTATTRPILTVSTDIAGITNPAVLRYFETLNAGDFAATANLFADDGVLHAPFEEPIIGKSSIATYLKTEARGMQLQPQQGVSQILEDGQVEVQVSGRVQTSVFGINVGWRFVFNSHQQILSVTVKLLASPQELLNLRSHKKFDV
>NC_019729.1|WP_190274220.1|3976423_3976594_+|hypothetical-protein
MLLTVEKSRFCGICAIGTVPVQSYSLALGGRYFTENWLSPQRVRQTAKASLKVHCQ
>NC_019729.1|WP_015177027.1|3976626_3977049_-|anti-sigma-regulatory-factor
MNTELHVPSDLRFLTIVENWLLSSLEVELGEHVDWPRQSNRLRLVLAEAYSNVIRHAHKDQPNLPVLIRLNLKNRDIGLEIWDYGKGYEMDTYNPPRPEAKQESGYGWLIMSRLMDRVDYSLQIDGRNCLKLEASLPEKS
>NC_019729.1|WP_015177028.1|3977558_3979232_-|SpoIIE-family-protein-phosphatase
MSRGDGSKLKLMVVDDEPDNLDLLYRTFRRDFQVYKADSALSALEVLDEQGEMAVIISDQRMPEMNGTEFLGKTVERFPDTIRILLTGYTDVEDLVEAINSGQVFKYITKPWNPEELKLVINQASETYKYYKQRSVALRRALRKESLFNEVMSVIRGSLDYSSMVQTIVQTVGQTFEANYCMLRPVEADRLLPSSFPYQAQTSEASSFSFDENLLVQAVASRQTQVNSNSGGQGNSVEIAVPLTYQQELLAVLALSQIGGTNPWSAEEIELIEGVAAQAALALSQAKLYQRTLDLAKQMQTELEVARQIQTNLLRQSWPDFETVRVQACCYPAREVGGDFFEVYVHSQGDIWIAVGDVSGKGVPAALFMASAISVMRRELSQEVSPEPDRVMQNMNSSMSDDLIGNNHFITMVVARYTPSTGHLAFANAGHIYPIVWSHSEVKAQAASGKTPVEPNFLKARGIPLGILPVWRGKAGTIELKSGDVFLLTSDGITEASVTTEAVAGGEPTRSMLQQEGLWQLLIQEPGSFNLDNLLARIRADNPVQEDDQTILSLEVL
>NC_019729.1|WP_041622580.1|3979492_3980620_-|transposase
MLLSFKTELKPNNRQVTLFRQHCGVARHAYNFGNAIIQEALQLREADKTIKIPSAIDLHKRLVAEIKPANPWYYQSSKASPQQALAEVRTAWDRCFKKVSKQPRFKKKGKSKDSFYLEQGTKAKPGISNDGKRVKLPKIGWVRLHEPLPITATHNCVISRTADKWFIAIKYEIEQPPIPLNRPSIGVDIGIKELAVTSDGKVFANPKAYRKMSKKMKRLQRSVSRKVKGSKNRTKAVRKLAKLHSRISFIRKDAIHKLTNHLAKNHSVIKIENLNVKAFLKNHKLAGAIADCGMYEFKRQLEYKTEKFSSQLILVDRFFPSSQICSNCRNHRHKMPLKNRVYVCPDCGHTEDRDLNAAKNIERWFEGIHIPIRSD

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Crispr_ID: NC_019729_36

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_36

4041098-4041181

Orphan

Consensus_repeat	Method
CACTGAATCGGGAGGGCCGCGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_36

>merge|NC_019729|36|4041098-4041181|CRISPRCasFinder
CACTGAATCGGGAGGGCCGCGCTTCGGTCCGCCGACTCCAAGCACAGATGGCAAGCCATTCACTGAATCGGGAGGGCCGCGCTT

>NC_019729|36|35|4041098-4041181|CRISPRCasFinder
CACTGAATCGGGAGGGCCGCGCTT	CGGTCCGCCGACTCCAAGCACAGATGGCAAGCCATT
CACTGAATCGGGAGGGCCGCGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177072.1\|4042074_4042827_-\|lipoate--protein-ligase-family-protein	unknown	unknown	gnl\|CDD\|223173
NC_019729.1\|WP_015177075.1\|4044996_4045395_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236757
NC_019729.1\|WP_015177078.1\|4048206_4048650_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177080.1\|4054282_4054906_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_019729.1\|WP_015177073.1\|4042970_4043297_+\|thioredoxin	unknown	unknown	gnl\|CDD\|181812
NC_019729.1\|WP_015177069.1\|4037587_4038784_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100085
NC_019729.1\|WP_015177076.1\|4045522_4046329_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_019729.1\|WP_015177065.1\|4035382_4035934_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|226857
NC_019729.1\|WP_015177067.1\|4036438_4037089_-\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|234923
NC_019729.1\|WP_015177077.1\|4046962_4047967_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_019729.1\|WP_015177066.1\|4035993_4036308_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|237713
NC_019729.1\|WP_015177070.1\|4038975_4040931_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_019729.1\|WP_015177064.1\|4034038_4035337_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NC_019729.1\|WP_015177074.1\|4043520_4044753_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|180947
NC_019729.1\|WP_015177068.1\|4037222_4037507_+\|photosystem-I-reaction-center-subunit-PsaK	unknown	unknown	gnl\|CDD\|274410
NC_019729.1\|WP_015177079.1\|4049055_4052580_-\|response-regulator	unknown	unknown	gnl\|CDD\|143636
NC_019729.1\|WP_006634481.1\|4028958_4029159_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177061.1\|4027969_4028800_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_019729.1\|WP_015177063.1\|4031708_4033370_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239492
NC_019729.1\|WP_083888171.1\|4055566_4063498_-\|DUF4347-domain-containing-protein	unknown	unknown	gnl\|CDD\|372982

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177072.1\|4042074_4042827_-\|lipoate--protein-ligase-family-protein	gnl\|CDD\|223173	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].	3.92105e-45
NC_019729.1\|WP_015177075.1\|4044996_4045395_-\|hypothetical-protein	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0.000520503
NC_019729.1\|WP_015177080.1\|4054282_4054906_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.75748e-15
NC_019729.1\|WP_015177073.1\|4042970_4043297_+\|thioredoxin	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	4.69547e-34
NC_019729.1\|WP_015177069.1\|4037587_4038784_+\|site-2-protease-family-protein	gnl\|CDD\|100085	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.	5.27321e-83
NC_019729.1\|WP_015177076.1\|4045522_4046329_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.25644e-128
NC_019729.1\|WP_015177065.1\|4035382_4035934_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|226857	COG4449, COG4449, Predicted protease of the Abi (CAAX) family [General function prediction only].	2.60612e-43
NC_019729.1\|WP_015177067.1\|4036438_4037089_-\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	1.43757e-89
NC_019729.1\|WP_015177077.1\|4046962_4047967_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_019729.1\|WP_015177066.1\|4035993_4036308_+\|acylphosphatase	gnl\|CDD\|237713	PRK14423, PRK14423, acylphosphatase; Provisional.	5.5672e-36
NC_019729.1\|WP_015177070.1\|4038975_4040931_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	1.30976e-114
NC_019729.1\|WP_015177064.1\|4034038_4035337_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	1.43075e-10
NC_019729.1\|WP_015177074.1\|4043520_4044753_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|180947	PRK07366, PRK07366, LL-diaminopimelate aminotransferase.	0
NC_019729.1\|WP_015177079.1\|4049055_4052580_-\|response-regulator	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	2.71197e-55
NC_019729.1\|WP_083888171.1\|4055566_4063498_-\|DUF4347-domain-containing-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.04635e-74
NC_019729.1\|WP_015177068.1\|4037222_4037507_+\|photosystem-I-reaction-center-subunit-PsaK	gnl\|CDD\|274410	TIGR03049, Photosystem_I_reaction_center_subunit_PsaK, photosystem I reaction center subunit PsaK. Members of this protein family are the PsaK of the photosystem I reaction center. Photosystems I and II occur together in the same sets of organisms. Photosystem I uses light energy to transfer electrons from plastocyanin to ferredoxin, while photosystem II uses light energy to split water and releases molecular oxygen. [Energy metabolism, Photosynthesis].	3.80803e-27
NC_019729.1\|WP_015177061.1\|4027969_4028800_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.46684e-27
NC_019729.1\|WP_015177063.1\|4031708_4033370_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239492	cd03398, PAP2_haloperoxidase, PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.	1.24068e-52

>NC_019729.1|WP_015177070.1|4038975_4040931_+|adenylate/guanylate-cyclase-domain-containing-protein
MPKFLHQFHHQLKDRGWSWKNVTHFFPFPDLQPLAIIWIVVTGTLLGVRHLGGLQPLELNAYDLMVQLRPDPGPDPRLLIVTITDRDINTLEKWPISDRVLAKAIAEIARFEPQAIGIDIIRSTPYEPGKAELATQLKNPKVFPITFIGNSEYDRAPPPPNIPENRIGFNDLVLDPDGRVRRNLMFAGDGKTTLASFSMRLAFAYLDSKKIDSKLTEKQEIQANKTVFSKLRSDSGGYQNINAQGYQVLLNYRSAENIAKSVTLTQVLDRKVDPKLVKGKIVLIGVTARTVRDLFSSPYSANASGNRLMPGVLIHATATSQIISAVLDGKGLFWYWDEWQEILWIAVWGAVGGCLAWRLEKSLNLMGSAIAACGSLFGFTFFLFMQHGWIPLISPTLALLITAGVAVTYKYEQSRQQQGIVMKLLGQQTSPAIANALWKERVHLLESGLLPGQKVTATIILTDLQGFSTISEKLPPEVVMSWLNEYLSAMAQEVQAHQGVINKFTGDGMLAVFGVPIPRTTPEEIAEDARLAVSCALAISSRLPQMNQNWIDRGLPAAKMRVGIFTGAVMVGSLGGSTRLEYGVIGDSVNIASRLESCEKDRQEDTCRILIAEETFLHLADKFEVESWGALPLRGREQKVNVYRILGRKKK
>NC_019729.1|WP_015177069.1|4037587_4038784_+|site-2-protease-family-protein
MQTGWRIGSLFGIPLLIDYSWFIILALATREYASSYRLWGPALSWSAGLAIALLLFASVLLHELGHSLAAISQGIKVNSITLFLFGGVASIDSESKTPGQAFQVAIAGPLVSFALFLILGLGSQVLPPKSLLAIVTDRVALINLVLGLFNLIPGLPLDGGQVLKAAIWKITGSRFAGVRWAAKTGQVLGWLAVALGLSLCFLAREYGGLWIALIGWFGIRNATAYSQFTSLQEALLKIKASDAMSREFRVVDADLTLREFADRYLLEVNPFPFYIAATNGRDLGLVSIDDIRFTERSQWQHQTLHNILKPLGTTPTVSEKASIAEVINSMEARQLPRIIVLSPIGSVAGTIDRGDVVKVLAKYLKPQISEADIKRSKEENSYPQGLKLSAIAKTAQEN
>NC_019729.1|WP_015177068.1|4037222_4037507_+|photosystem-I-reaction-center-subunit-PsaK
MIASSLLLAVQSTAPSTPEWSPTVGLTMILCNLLAIAIGYYGINKQNRGKGPALPVAVPGMFKGFGIPELLATTSFGHLLGAGVILGLGNAGVL
>NC_019729.1|WP_015177067.1|4036438_4037089_-|phosphoribosylanthranilate-isomerase
MRVKICGITKLDQGIAIARLGAQALGFICVPASPRYVSPETIRLIVEQLPKNVDRIGVFANTTIENICQVAAESNLSGVQLHGNETAEYCDRLREFLPGIEIIKALRVKTPETLATAAVYAVRVDTLLLDAYHPEQLGGTGKTIDWMMLSEFRPQCPWLLAGGLTPDNILNAIDSAIGYNFSGVDLSSGVEIAPGDKDLTKVAQLFAKLSQLANHR
>NC_019729.1|WP_015177066.1|4035993_4036308_+|acylphosphatase
MQNQSLPPVRVRVFVSGLVQGVGYRYSTMNQAKYFGLGGWVRNLPDGRVEAVFEGSKKAVEEMISWCRRGPTGATVSELVLAYEDAEGDSLQDSSASGTFEIRR
>NC_019729.1|WP_015177065.1|4035382_4035934_-|CPBP-family-intramembrane-metalloprotease
MLNFSAMALLGLLVRRVTLAFSTIPDFTDWLVAAMLALVYTSMALPIGFWSGFLKVDVQTSRATIVGVLVGCLLSPGITEEVYFRVLMLPHPFENASGLMLWFWGCASLAVFVVYHPLNALTFYPVGRSTFMNPVFLLLAAILGVACSLAYLQSGSIWPAVAVHWLAVTAWLLLLGGYRRLYG
>NC_019729.1|WP_015177064.1|4034038_4035337_-|HEAT-repeat-domain-containing-protein
MGIIGAIVGFLAGVAVAYWLYEKRLNKQKQEYLQQTRRISEEIELAQMSRVQQAVESQQGERENQLRKATIEHENLLRQVTTQYENQLKQVAAQYENQLQQLQAERDSQIQQVASVDEHELRRQISEELEAANNARMQQNIQSLQAEHEHHLLRVADELHLNYQAQMEQHLQNLQNEHEIRLRQTAEEYENREVEMQLNMEALQEQYESQLQAAHEQLRTHEAQMQATIRSLQEQYESNVQQEVPEQQFSQLNSTEFGEYLPQQEVWQEQSSELNQTEVEEELNYTDFSEPQPSDLHQPPVEQQLPITRQAPSYSLPQLMGCVQSQDKETRKFAASALGKIAAANALRAEGQRAIETLGKLAQDIHPEVREAAVEALAMIKSEKVIPLLQKALRDIDSGVAKSASAALNKFKFYPRTPAAKPKNVDLKKPKR
>NC_019729.1|WP_015177063.1|4031708_4033370_-|phosphatase-PAP2-family-protein
MDQEVVDLVTAQNLLPSQGDLVAKFSKIDLPKTIEMGDRAKVNVKLTNQGSAPVTGPVTVKLYTSTDSTIDRAPDGKLVNDCLLTSTIQQVNLLPGQSTTVRLNYGNMTSVGAPGACNLIAEINQNNNTKQISKLVSATGSDVVIDWNATALNAIQAEGKAGRGVPPTVGSRLMAITSLSVYDAVNAFDRTHTSYAVNTPAPIGASEEAAAAAAAHKALVTLLPNQTQLFDRQLARSLAEIDDTPQAEADGVAFGNFVADTILASRANDGSSNNAPYVPPEGDYVWRPKTEGPNKGAALGPNWGKVKPFAIPNTAAFAPKGLDGVPGTDRFVQDLEEVRLLGGKQSTANTTVTRTPDQTEIAIFWADDRADTFRPYGQLNQIAEEVAMREETTVPENARLFAELNVALADAGIVAWDAKYNSKVIQPRPDDLITGGFGEKKGISGTVTDPEWEPLLSPTPPFPDYISGHSTFSGAFAGVMTNFFGDNYSFTAVSQEMPGVTRTYNSFYDAAYEDAISRVYGGVHVREATVDDALPTGLAVGNFVAQNLFKTVG
>NC_019729.1|WP_006634481.1|4028958_4029159_+|hypothetical-protein
MNSTLKQYPACSLREDVSEYVAHLQLHMTLQARNLLPTITTAKDSREQLLQQTQAHFEKRVSRQAI
>NC_019729.1|WP_015177061.1|4027969_4028800_-|alpha/beta-hydrolase
MQSQAIVGQKHTLSIFVNSSSQTSAYLEIGCGRPRSMLHGFLGEKTCWLPLIELLPSQFRCISLDILGFGESSQPEIRYDIAVEVAFVRQVVEQLNIEPCCIIGHSFGGWVASAYSLKYPNSVSSLVLAAPDGIRDDTFCGQYDALRPLLWETPAVDWVLQLAKPFASLAGKSEQLQQISGWRRELMSQPVARSFLMSRMRPEDAVDTVEKEIHKLQIPTLVIAADSHETIPLWHCETCANEIPGAELAIISNATHGLPQTQAQTMAKLICNFLNN
>NC_019729.1|WP_015177072.1|4042074_4042827_-|lipoate--protein-ligase-family-protein
MDNSVWRLIPLLSASGSVQMAIDHWLLEQHLAGKNPPTLRFYTWQPAAISLGYHQRRWPEFWQQLSWQGMPVELVRRPSGGRAVLHQGDLTYAVVASGFGSSRMKAYQTICEFLIEGWRAMGLDLQYGEAGRGYIHNPNCFGTATGADLVTLDGCKLIGSAQLRRGDAILQHGSMRLQPDVKLFSQVFGEELIPVQLPLSEGGDDLIATVIDVLSAEACRCFEIDLEVQPLSEEEWQDIWELTSSKLFHI
>NC_019729.1|WP_015177073.1|4042970_4043297_+|thioredoxin
MSNSVIVINDEKFETEVLKAEQPVLAYFWASWCGPCKLIAPSVDWVAANYSDRLKVVKMEIDPNPNTVKQYKVEGVPALRLFKNAEVVLSHEGAITKQTLVGLLDAHL
>NC_019729.1|WP_015177074.1|4043520_4044753_+|LL-diaminopimelate-aminotransferase
MQFAKRLEPLQFNVFADMDRAKAQARAAGQNVIDLSLGSSDLPAAAHITDAIAHSLSDTSTHGYLLFNGTRDFREAAAIWYEQKFGIAVNPETEVLPLIGSQEGTAHMPLAVLNPGDFALLLDPGYPSHAGGVHLAGGQIYPMPILAENAFLPIFEDIPAAVLAESKMMVLSYPHNPTTAIAPVAFFEKAVAFCREHRLVLVHDFPYVDLVFDDSVGAVPPCPPSGNGEEYRKLMAPSIFQADRDKSVAIEFFTLSKSYSMGGFRVGYAIGNSELIAALRQVKAAVDFNQYRGILNGAIAALTGPQDTVRTSVETFRKRRDAFVNALQPIGWQVPVPPATMYVWAKLPEPWAQDSVKFCTQLVQSTGVAASPGAGFGKSGEGYVRFALVESPAILEAAVRKIAEFLNQGM
>NC_019729.1|WP_015177075.1|4044996_4045395_-|hypothetical-protein
MNAPTYNTHSVTCPICNRSSVVGPVGMVSGLFTCPHCHSHMVISWSGHFVRDPFSLKQLTVGKMLRRESRPLARLQRDFGLGKPLPLIAILGSVVFFGCALAATEQSLLRQNSLQGFLEWVSGTGNSQDISR
>NC_019729.1|WP_015177076.1|4045522_4046329_-|5'/3'-nucleotidase-SurE
MKLLISNDDGIFAQGIRSLANALAAAGHDVSVVCPDRERSATGHGLTLHQPIRAEIVESIFDPAVQAWACSGTPADCVKLALWALLDKPPDFVLSGINHGPNLGTDIICSGTVSAAMEGIMEGIPSIAFSLASYTSQEFGPAVDFAVTLLSQLEKQPLPKPVLLNVNIPAVTQAEITGVAIARQGIRRYFDIFQKRTDPRGKTYYWLAGELLEDVEEIADLAMPHDIPTDVQAIRDNRITVTPLQYNLTCAPDLHSLRDWQVEGFPKQ
>NC_019729.1|WP_015177077.1|4046962_4047967_+|phenylalanine--tRNA-ligase-subunit-alpha
MTVQLSDIETQLETLGQESKSAIATANTLEQLEQLRVGYLGKKGQLSQILGMMGKLSPDQRPKVGAIANTVKEALQADLEDKRAALQTAQIQAKLASETIDVTMPGIFRPQGRVHPLNAVIDRALDIFVGLGYTVANGPEMETDYYNFEALNTPPDHPARDMQDTFYLPGGDLLRTQTSSVQIRYMEQHKPPIRIVSPGRVYRRDTVDATHAAVFHQIELLAIDEGLTFTDLKGTIKEFLRQMFGQDLPIRFRTSYFPFTEPSAEVDLQWNGKWLEVLGCGTVDPNVLKGVGLDPEKYTGFAAGFGVERFAMVLYEIDDIRRVYASDLRFLRQF
>NC_019729.1|WP_015177078.1|4048206_4048650_-|hypothetical-protein
MKLNSLTKRLSTVGRWMAATVLCVSAMAFVWQGAFFSNTAAMASPAVNIAAADAGDGVKEKASKDAGRAKNFIRDTEDKVKETAKTNAAKVDRASDDGSFVERKAKKDSATIEKRASEDSARTQEAVDNTKNAVERAVDSIKGAFGN
>NC_019729.1|WP_015177079.1|4049055_4052580_-|response-regulator
MNSQENPKLKILIVDDEPDNLDLLYRTFHRDYKVLRAESGPAALEILAKEGEVAVIISDQRMPKMSGTEFLSLTAAQYPDVIRIILTGYTDVEDLVEAINAGKVFKYVTKPWDAQELINLVSQAVETHNLLKTRTNELRRALSQESLLYAVTNTIRSAPNYQQMLQRIVETVGQMFEVSCCLLRPFQDGRVADEWFVYQKAETKGLGGDEEAMPGDASAAELSPDLLRDLVWETLDVEVIQDAQTDDRVLNWDNQQRQQAYEAANIRSSLIVPLFYKIELMAVLALHQFDRPRQWQDHEVQLVITVADQAALALSQARAYERVRALAKREALVNTITTAIRSSLDPQNIFAAITQQLGQALQVDGCALSLWTEDDEYVQCVGLYDTDRDTVAVEQGFMDNPEVVANPLGYETASGDDAANPRGWVFAHPSLPQSLVPIRGNPLLLEVMVSKEPVAIEDLEEHPELNVTELQVRSPARALLVVPLLSEGKIIGSISLRQNHSIRRWNLSDIDLAQIVATQAALAVQQSRLYQTTRQQAERLLEADRLKTEFFQNISHEFRTPLTLTIGPLESACRRQEDLPYEQAVIALRNSRRLLRLVNQLLDLQRLDAGRMQPSFRPCDLVGFCYSTAESFRAYCEKKGLHLITQLQECPLLYLDLERFDKVIYNLLSNAVKFTPEGGTITLKVESAGAHCLLQVKDTGIGIRTEQIPYLFERFHQAEGSASRSYEGSGLGLALVKELVELHGGQISVESVYGEGTTFTVWLHFGSTHLPPEQVLEIPAEFHSSKAAVELADVEAELSENEAENHNFEALQPVRSETAVGTVLVVDDNPDLRFYVSAILRDAGFAVLLARNGQEGFAVAKKRRPNLIITDLMMPLISGLDLIKMIREDEELQGTPAILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLIALKQNERRVQQLNSYLTESVLRRFLPPSMVKAAAAGDLALDLRPEPRLITILFSDIVGFTEMANTLRSRRVAELLNEYLAAMTKAIFDSGGTVDKFVGDAVMAFFGAPEELTPNEQVRRAVAAAEQMLRALKELNKGWLEQGIVGENGVSPLRFRCGIHQGTAVVGMFGGPDRSDYTAIGPSVNIAARLQEVTEPNTVLISAAVADYVEENRIVKYKPLKLKGIDETVLTFLLNCD
>NC_019729.1|WP_015177080.1|4054282_4054906_+|GNAT-family-N-acetyltransferase
MNPSFFSSPSHQQQTPGLSGFSLRVATPNDLTQLADILAMSFHSREGFVEWVYPVLRLGIYEDLKNRLRSKAEHYICLVAELVSREEGTQNYRSHRAQRITGTVEMALRSRFPWQIPNSDYPYLSNLAVHPEYRRQGVAQQLLSNCEETAREWGFSEIYLHVLENNHAARQLYYQAGYRLQQVDWNWTGWLFGQPRRLFLRKQISLS
>NC_019729.1|WP_083888171.1|4055566_4063498_-|DUF4347-domain-containing-protein
MKTIPNLSNLSSTQARKYTNMETKILRQASHKAETAVRINLAIVDSKVENYQEFLRGVKRDTEVILLDRTRDGIEQITEILGQRNSITSLHIVSHGREAAVEIGRAELNIDNLETYSNQLQQWGKALSESGSILLYGCNVAAGESGIKFIQKLSEITGANIAASNNLTGSAALGGDWELKITTGQINTEIAFEKEVLEGYTSVLATLAAEEFKNSTVIGPWIYGVGNTLTTNPGLTAGSTQNLSGVIPALGTGDTPGTGTLRLTSNEFNQAAFVIYNNPISATEGLKITFDFFAYNRGTVPAPDGSLLGADGISFFLIDGTATPTKAGGFGGSLGYAQNTNTPASSGISGGYLGVGLDEFGNYSNNNAGRVGGPGQRPDSIGLRGSESTSYNFLSTTSVAIGIDNKDTTIRAAAKRTVQITLFPTNSATPNRLTVGFDFNGNGIFEANETPITISNLATLNGGEVPRTFKFGFAASTGGNTNIHEVNNVIVESIDPPTLVADVSIVKKGPLYAIPNSTITYTITSTNNGPNSAESVLIQDPLPEGLTFVSTDNNGTFNPTTRTVIWPAIPTLANGASEIRTITATVSPTVTAPLTNTAYSTSSTFDPDLGNNNSSQPISQVSTTIVAALADLVTTKTGTTAAAPGERVTYTISTVNNGPSTAENVTITDTILPNLTGVIPSNGGVYDPATGIVTFAAGSVTNTATVTNTVSFIAPASGSVSNTARSTSTTTDPTPANNQATFTTPLTPSADLVTTKSGTVAAAPGERVTYTISTVNNGPSTAENVTITDTILPNLTGVIPSNGGVYDPATGIVTFAAGSVTNTATVTNTVSFIAPASGSVSNTARSTSTTTDPTPANNQATFTTPLTPSADLVTTKSGTAAAAPGERVTYTISTVNNGPSTAENVTITDTILPNLTGVIPSNGGVYDPATGIVTFAAGSVTNTATVTNTVSFIAPASGSVSNTARSTSTTTDPTPANNQATFTTPLTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTPTPTPTTPTDNQPPLANNANSSLGPNSSQLVTGLGGSDPDGSIASYTINTLPSPDQAVLFLGDPANGGVPVTPGQVLTPAQLQQLFFQTTGNFTGANFTYSATDNSGASSPAVATVAAILPTDNQPPVANNANSSLGPNSSQLVTGLGGSDPDGSIASYTINTLPSPDQAVLFLGDPANGGVPVTPGQVLTPAQLQQLFFQTTGNFTGANFTYSATDNSGASSPAVATVAAILRPGAPTPTPTPTDNQPPVANNANSSLGPNSSQLVTGLGGSDPDGSIASYTINTLPSPDQAVLFLGDPANGGVPVTPGQVLTPAQLQQLFFQTTGNFTGANFTYSATDNSGASSPAVATVAAILPTDNQPPVANNANSSLGPNSSQLVTGLGGSDPDGSIASYTINTLPSPDQAVLFLGDPANGGVPVTPGQVLTPAQLQQLFFQTTGSFTGANFTYSATDNSGASSPAVATVAAILRPGAPTPTPTPTDNQPPLANNSNSSLGPNSSRLVTGLGGRDPDGSIASYTINTLPSPDQAVLFLGDPANGGVPVTPGQVLTPAQLQQLFFQTTGSFTGANFTYSATDNSGAISPPATATVAGLIAPTPLTPTDNQPPVANNSNSSLGPNSSRLVTGLGGRDPDGSIASYTINTLPPAAQGVLFLGDPANGGVPVTPGQVLTPEQLGQLFFQSTGDFTGATFSYSATDSNGATSPLATATLGSTGATPTPNPLNLPPVTNNANFTVDPNSSARVPGLGGSDPDGSIASYTINTLPPAAQGILFLGDPANGGVAVTPGQVLTPEQIGQLFFQSTGDFTGANFSYSATDNSGATSPATATVAAISPTSNQPPSINNVNFTVPTDGIVQVLGLGGSDPDGSIVSYTITRVPPANQGVLFLSDSVNGDIPVTAGQVLTPAQIGQLFFVATVDFNGATFSYTATDNLGKVSPASATVAAILRPVGTVPPLIPTPTPTPAPGISNPIGEADTDCQCSPIIEKPGINFAPPQQPPAVGFVRPISQFSEGQTTKGSDGDDFIADTKGNQKIVGFKGNDLLLGEDGADEIYGNEGNDRIFGGTGTDIVYGDEGNDIVFAGKQNDWIAGDLGSDTLFGDRGADTILGDTGQNNSQSPDDARDLIFGGEGADLINGNEGEDTIHSGKGDDIALGGKENDLIWGELGSDTLFGGIGSDSLFGGIRDQRASDSQGRDLLYGGFGNDFLHGQQDNDTLVAGKDNDRAYGGKGNDIIYGQLGSDTLYGGEGADTLLGDSGSSQSIGDLGEQDLIFGDSGNDIIGGGHGNDTVQAGKGNDCVWGGKNNDLIWGEIGSDTLVGDSGDDTMYGGARSRVQDVGGRDLLFGGIGADVLFGDEGDDTISGGQDNDLIYGGKANDLIHGDLGDDLIYGGDGSDELCGDEGNDTIYGDRADNRGVSVGANDQQDCINGGDGNDLLYGNEGQDTINGDAGSDTLIGGKDNDLLNGGAGDDWLFGGLGEDTLIGGIGSDRFVLNGQGGTDTVINFEVGVDKFVLSDGLSFQQLQFSATPNGTLLLVAGTDRVLANLVGVKGAIGSSDFLPNLSEL

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Crispr_ID: NC_019729_37

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_37

4153091-4153171

TypeV

Consensus_repeat	Method
ATTGAGCAATCACCTACTCAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_37

>merge|NC_019729|37|4153091-4153171|CRISPRCasFinder
ATTGAGCAATCACCTACTCAATCAGTGATGAGTAATTTTAAGCAATTTATGGATGATATTAAGCAATCACCTACTCAATCA

>NC_019729|37|36|4153091-4153171|CRISPRCasFinder
ATTGAGCAATCACCTACTCAATCA	GTGATGAGTAATTTTAAGCAATTTATGGATGAT
ATTAAGCAATCACCTACTCAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_190274226.1\|4149841_4150015_-\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906
NC_019729.1\|WP_015177157.1\|4154696_4155026_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177159.1\|4155688_4156390_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224001
NC_019729.1\|WP_015177162.1\|4159791_4160529_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_190274227.1\|4150358_4150526_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177147.1\|4143922_4146001_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|378215
NC_019729.1\|WP_158307982.1\|4143754_4143910_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177160.1\|4156542_4157022_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240028
NC_019729.1\|WP_015177149.1\|4147337_4148417_+\|fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691
NC_019729.1\|WP_015177155.1\|4153686_4154022_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_019729.1\|WP_015177153.1\|4152066_4152648_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177151.1\|4150018_4150360_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_019729.1\|WP_015177158.1\|4155039_4155300_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177150.1\|4148888_4149527_+\|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372640
NC_019729.1\|WP_015177156.1\|4154009_4154426_-\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_019729.1\|WP_015177164.1\|4161311_4163855_+\|mannose-1-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|100097
NC_019729.1\|WP_006633481.1\|4160536_4160734_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177148.1\|4146105_4147005_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185702
NC_019729.1\|WP_015177152.1\|4150484_4151861_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|366375
NC_019729.1\|WP_015177161.1\|4157830_4159546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_190274226.1\|4149841_4150015_-\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	1.33064e-16
NC_019729.1\|WP_015177159.1\|4155688_4156390_-\|alpha/beta-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.23927e-16
NC_019729.1\|WP_015177162.1\|4159791_4160529_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.86687e-14
NC_019729.1\|WP_015177147.1\|4143922_4146001_+\|CapA-family-protein	gnl\|CDD\|378215	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	1.78329e-88
NC_019729.1\|WP_015177161.1\|4157830_4159546_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	6.01255e-15
NC_019729.1\|WP_015177160.1\|4156542_4157022_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240028	cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.77894e-17
NC_019729.1\|WP_015177149.1\|4147337_4148417_+\|fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0
NC_019729.1\|WP_015177155.1\|4153686_4154022_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	2.79623e-66
NC_019729.1\|WP_015177151.1\|4150018_4150360_-\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	4.23396e-18
NC_019729.1\|WP_015177150.1\|4148888_4149527_+\|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	gnl\|CDD\|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	2.61485e-06
NC_019729.1\|WP_015177156.1\|4154009_4154426_-\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	1.78528e-82
NC_019729.1\|WP_015177148.1\|4146105_4147005_+\|aldose-1-epimerase	gnl\|CDD\|185702	cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	8.15492e-136
NC_019729.1\|WP_015177152.1\|4150484_4151861_-\|AAA-family-ATPase	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	8.5821e-06
NC_019729.1\|WP_015177164.1\|4161311_4163855_+\|mannose-1-phosphate-guanyltransferase	gnl\|CDD\|100097	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0

>NC_019729.1|WP_015177153.1|4152066_4152648_+|hypothetical-protein
MNWEDFARKAGEEVVENVVEKTTGIDGNTVKTVKAVAETGAAVGAATSAATGLTVAATSGAGITSGLAAAGGVVGGGMAAAPAVLAAGPAYLGAKIMNETLFKEQSNLSEEENDARAAARTATNIGAAAGLVGAGAVTVAGGASGAAIMGTLAGIGGVVGGGAIAGTAIVAAAPVAAAAAVGYGIYKLFGGKG
>NC_019729.1|WP_015177152.1|4150484_4151861_-|AAA-family-ATPase
MNLKEMLNVADRIVFEKTGQHLDDLQDAVLRGTLQRETYKEIAKDFDCSESRLREIGSELWQILSEGLGEDVNKTNFRSTMERLHNSNILNFAQDVVVKGSFNTCGEGRYPPNIPNSHNDEKSNSKPTKTLHQDLSEMPELGDFFDRPLELQTLTTWIIQQHSRLITLTGISGIGKTTLAVQLVQQIKDKFEYAVWYTLDEFPTIEKFQSNLIQLFSHSEKQDSSSTNQKPLPLIKYLQNHRCLIVLDDVHNLFCSGELAGKYKPESEEYRSLFKQIEKLSHQSCLMLIGWEQPREVTQAKSQNTSIRTLQLKGLDIAAGREILRDCGLEASDNSEALIHRYQGNPLWLKSVANLIQDLGGGVTELLPNDTILLPEDLKDILQQQFDRLSELEKQVIYLLAKESQPIDRAKLLENDIIPASDLLNALQSLSRRCLIEQQANFYTISPVLRQYAIASAV
>NC_019729.1|WP_190274227.1|4150358_4150526_+|hypothetical-protein
MANNGIATTDHSIEPIAPFTRSPIATSSNLGEGRECKQWLYQLHRRGDRILPQYR
>NC_019729.1|WP_015177151.1|4150018_4150360_-|DUF433-domain-containing-protein
MTLKELEPQLLALSDDEKAQVVQLLSQGKITPWRGIEKTPDVCGGSACIAGTRITVWGLVEARRIGYSEAELLTSYRLLSATDIANAWAYAEAFPDEIETEIRENNEVMDEDL
>NC_019729.1|WP_190274226.1|4149841_4150015_-|DUF5615-family-PIN-like-protein
MARLYADEQYPYPVVELLRALGHDVLTVQEAGRANQKIPDPDVLAFATSEKRAVNRF
>NC_019729.1|WP_015177150.1|4148888_4149527_+|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein
MAKVIAVTDAIKSLAEAESRLNLSLTEDEAFFTEWQVELPSPSDSEQTALDTLRRRLLYHRSDGELLEGAVTLLVASPLLELAGFYDPPFRMKAEAAIEIAIDDGEETLRGRIDILILQNQLWVMVLECKKTTISVRSALPQALAYMMANPDLDKPRFGMLTNGDDVLFVKLMAQPAPEYGLSRAFSIYTVRSELRSAFQVLKHLGQGIAAV
>NC_019729.1|WP_015177149.1|4147337_4148417_+|fructose-bisphosphate-aldolase-class-II
MALVPMRLLLDHAAENGYGLPAYNVNNMEQIQAIMRAADETNSPVILQASRGARSYAGENFLRHLILAAVETYPHIPISMHQDHGNAPGTCYSAMRQGFTSVMMDGSLEADAKTPASYEYNVEVTREVVKVAHSIGVSVEGELGCLGSLETGMGEAEDGHGFEGALSHDQLLTDPEQAVDFVEQTGVDALAVAIGTSHGAYKFTRKPTGEILAISRIEEIHRRLPNTHLVMHGSSSVPQELLEIINSNGGKIRETYGVPVEEIQKGIKCGVRKINIDTDNRLAITAAVREALFAKPDEFDPRHFLKPSIKYMQKVCSDRYNSFGCAGNGTKIKQVSLDDFAAKYAKGELSSSAKKTVAV
>NC_019729.1|WP_015177148.1|4146105_4147005_+|aldose-1-epimerase
MINDLLPMTNVFAIALKQKQYKTYILSDETANSTLEVVPERGGIATSWLVEGKEIFYLDAERFANPALTVRGGIPILFPICSNLPENTYTHKGVERKLKQHGFARDLPWTIGEQVTEGCAALTLILDSSDKTLAVYPFDFQLAFTYQIKGNSLEIFQRYTNLSAEPMPFSSGLHPYFLATDKSKLRFEIPGMQYRDQNTHEKGYFTGVFDPTLDEIDVSFDELTGLAATVTDAASGLRLTLSYNSSYGKLVFWMVKGKDFYCLEPWTAPRNALNTGEHLIYLQPGATCEMLVRMTANFI
>NC_019729.1|WP_015177147.1|4143922_4146001_+|CapA-family-protein
MVYAENWSQPSILELARSGNFQALNYWIDSLLRPEGIYARVEQAQAGCVQILVEFQREFAPDPALIGSTLREGLVKFICHQLWRLNSPAVEGVRIHARLAGDADILWKQSVRIVTPANRQRRRYRSLPVVDWVKFKTYRSLLLVGSALASFILGCWVSYHEAVALQLGSPASGYQQAAVISGPPPKRADTVQAALEVVPVVQQKQVANPYDPTVTLMFGGNVNLSDALGASAANDHQWAFANMDEYRQADVAMVNLENSLTRSTLGSGKKQLNFKAAPESVKVLTAGGVDIVNLANSRAMDYEEPGLVETMNTLDNSGIQHLGAGRDIKEARRPDIIEVKGQRIAYLGYYDSELNVAEQGKAGTNPRRNNRVAEDIRALRGQVDWIIVNYHWGVELADYPGDWQIDLARFTIDQGADLVVGHHPQVLQGAEIYKGRPIVYSLGNFIFGPNARRDYDTAVLKVSLKDRNMKVEFLPVEVKKFQPKVVKGAAGDRILKRIEQISSIFDRPMRSSVVLDALVQPGAASKTPNSPLPGAAKSGTSQPGRGSGASDGESNLQGPGQPKPTLILPALPAAPQQPDNSSFFPNGTGPAIESNPPGNQNLPPRIYPTQPQNPSREPEPFTKEPFIKEPFISPPSPSQGAVPSPQSYLPPTRAVSFEVALKKQPASAIVPATSSNRSKHRIALPPIAGRIG
>NC_019729.1|WP_158307982.1|4143754_4143910_+|hypothetical-protein
MIKITDSRQPLNVENGGGQQLASKRAAEPVAVKLKELRFRSKQIGVIARAY
>NC_019729.1|WP_015177155.1|4153686_4154022_-|XisI-protein
MEKIEKYRDCIKQILTKYAAYKPSYGEVDVQVVFDTEHNHYQVVRVGWDNKQRVYGCAIHLDIKDGKIWIQQNGTEIDLGQELVNIGVPKSDIVVGFHPPYMRQFTEFAVG
>NC_019729.1|WP_015177156.1|4154009_4154426_-|XisH-family-protein
MSAKDKFHDVVKIALEKEGWQITDDPLSISVGGVDMLIDLGAERLLAAERQGEKIAVEIKSFLNTSAITDFHLAVGQFINYRTALKFKDPQRQLFLAIPLTAYNDFFKREFTTAVVEDYQLKLLVYDVEEEVIALWKK
>NC_019729.1|WP_015177157.1|4154696_4155026_+|hypothetical-protein
MERIPNEALVVRGGRNRPEDIKRSTATHPSGITGISVECGVGLSVAELAVTIPHGQVGVTTVGEVRSSDGDVIRTSGRSPNHATLTGLTPEQASLLLTPTIPNPSQQSS
>NC_019729.1|WP_015177158.1|4155039_4155300_+|hypothetical-protein
MQYPRIFADFHNADEQGRLRLNCVGTIEDLSRQNIKLEGGQLLALYDEELEVDGVVQYSEEESLWVAVIDWKQIRQVQDMLVQATV
>NC_019729.1|WP_015177159.1|4155688_4156390_-|alpha/beta-hydrolase
MPLPTVILPGYFAAASDYRELEKSLVDRGFPTVTVPLGKGDWLPTFGGRSMVPILRQLDRTVKQMLQQYGVPQINLVGHSAGGWISRIYLGEKPYTIHGDVLEDAGLWEAHPYVNTLITLGTPHVSQERWTRKNLDFVKIHYPGAFHPQVRYVCAAGKAVFGKRGFGTWLAYKSYELTVGKGETWGDGITPVEAAVLDGAENLVLEGVWHSPRSPGKWYGSPEVLPAWIEYLC
>NC_019729.1|WP_015177160.1|4156542_4157022_+|NUDIX-domain-containing-protein
MAREPIQTWYFTLVVVHLEDRFLLVQERKYEQQWYLPAGRVEKGETLLEAAMRNTIEEAGISIIVEGILRVEHTVMPKGNVRLRVIFVARPQDKTPPKSKPDEHTLCAGWYSLKELDQLSLRGEEVREMFQYMASGAPIYPIDLLTIEGAPFKNYRYRW
>NC_019729.1|WP_015177161.1|4157830_4159546_+|hypothetical-protein
MTDSSSLANTLSEPLRQPYWWAALASVSLHGVLGVSAPTLSNILFGGNSSKNIPGSVGIVELTPAEVSRLPQTIPPKPSNTRFTPFSIAPVPLPPAPKLAPPLPPAPDTINLPAMPPGMPPPGFFSPLPPSPLPPFTAPTAPPPPKTPSPTVRTPSQPTTPTIIPPVPPSGLLFPPLPGNFDRNIPPPPSMTEAPQLPGGGSEDEAETLKKIIASRGGLPLFPDGAPVFTPEFPIGRNVGPDGVPKLTQKDPNKRNLIAETPEERIKRQQFEEGQRQLGQSGQPGANLPTDRETQLAAANTYVALFEKFKKAYPDLEMTSPTPVNVPYPVTACSQKLQGTAVFGAVVSPQGLLKAEPQPIVPTGYSILDNTAKIAIISPSLTFSAASTHKLYQLTVDFKYDEKVCSGIPATPTRPNPPGQQRPAPAPTAPRPTGQQPSPAPTEVKPQFEKPPAPSTKPQPGAKPSPSAPKPAAQPSPSPEPKPAAEQSPSPQPQPAQESPQPEAAPSPAPEVSPSPEAAPSPAPEVSPSPEAAPSPAPEVSPSPAAEVSPSPAPEVSPSPEAAPSPAATEK
>NC_019729.1|WP_015177162.1|4159791_4160529_-|class-I-SAM-dependent-methyltransferase
MPKKSDRPVAGQEQTWFAKGKSDSWQVLLSQVASRFDREYRGEAFALPEEVEAMPIFLESVAGTLQEKTVSPFWKIAKPQKNQRCLDIGCGVSFLIYPWRDWEAYFYGQEISSAARDALNARGPQLNSKLFKGVEFAPAHQLNYEEAQFDLCLATGFSCYYPIDYWSIVMGEVKRVLKPGGHFVFDVLNPNAPLAEDWAILETYRAGEVFLETIEDWEKMIKAAGAKVVKKQSGDLFQMYKVQYN
>NC_019729.1|WP_006633481.1|4160536_4160734_-|hypothetical-protein
MSTLISLALLIAYGGGIWKFWNGFDRTNFDRSFTNRLKLSLLWPALIFNKPYRQNFTKALKASKR
>NC_019729.1|WP_015177164.1|4161311_4163855_+|mannose-1-phosphate-guanyltransferase
MRAVLMAGGSGTRLRPLTCDLPKPMVPILNRPIAEHIINLLKRHQITEIIATLHYLPDVMREYFTDGAEFGVQMTYAVEEDQPLGTAGCVKNISELLDRTFLVISGDSITDFDLTAAIEFHRSKQSKATLILTRVPNPMEFGVVITEENYRISRFLEKPSSSEIFSDTVNIGTYILEPEVLDYLPANQECDFSKDLFPLLLEKNEPMYGYIAEGYWCDVGQLDVYRESQYDALRGKVKLDLSYYNEVRSGLWVGQNTFIDDSAIVEVPAMIGNNCRIGARVTIDAGTVIGDNVTVGADANLKRPIVWNGAIVGEDAHLRACVICRSTRVDRRAHVLEGAVVGSMSIVGEEAQVGPSVRVWPSKNIESGALLNQNLIWGEQARRNLFGQRGVQGLANVDVTPEFAVKLGAAYGSTLKPGTSVSVSRDQRSISRMVSRSLIAGLMSVGINVINLESTAIPIARTVSSTLSIAGGIHVRISPDRSDHILIEFFDIKGINITKGAEKKIEGAYFKEDLRRALIPEIGEMTYFNQALEVYNRIFERQMNVEAIRYSNTKVVIDYVYAVSGAILPQMLAKFGCDAVVLNASLKQTSLSNGEREYLLDQLGRVVKALSANFGVQVSANGEQLILVDESGIAIRGEMLTALMVNLMLTSHPKGTVVVPVHASSAVEAIARRYQSKVIRTKANPTALMEAANRNPNVVLGGSGLMGFIFPQLHPGFDGMFCIAKVIEMMTIQERSLGQIKAELPRITHRSYSVRCPWTIKGSLMRYLVETHSPDRLELLDGVKIFNYSDDNWVLVLPDASEPTVHIFANSEDRDWVSETLKEYRALVHDFVSQAEAAVLQDKFGNV

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Crispr_ID: NC_019729_38

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_38

4168609-4168802

Orphan

Consensus_repeat	Method
ACTCCCCACTGGCTGGGGAAACTAATTGAATGGAAAC	PILER-CR
CTCCCCACTGGCTGGGGAAACTAATTGAATGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019729_38

>merge|NC_019729|38|4168609-4168802|PILER-CR,CRISPRCasFinder
ACTCCCCACTGGCTGGGGAAACTAATTGAATGGGAAGTTTGTTAACTCTGGGGTCAAGTTTGATAATCTGTGTTGGTGCTCCCCACTGGCTGGGGAAACTAATTGAATGGAAACTGACCTGCATCGGCGCAAGGGTCGCACCAAATTTGTTGGCCCAACTCCCCACTCGCTGGCGAAACTAATTGAATGGAAAC

>NC_019729|38|6|4168609-4168802|PILER-CR
ACTCCCCACTGGCTGGGGAAACTAATTGAATGGGAAG	TTTGTTAACTCTGGGGTCAAGTTTGATAATCTGTGTTGGTGCTC
CCCACTGGCTGGGGAAACTAATTGAATGGAAACTGAC	CTGCATCGGCGCAAGGGTCGCACCAAATTTGTTGGCCCAACTC
CCCACTCGCTGGCGAAACTAATTGAATGGAAAC

>NC_019729|38|37|4168610-4168798|CRISPRCasFinder
CTCCCCACTGGCTGGGGAAACTAATTGAATGG	GAAGTTTGTTAACTCTGGGGTCAAGTTTGATAATCTGTGTTGGTG
CTCCCCACTGGCTGGGGAAACTAATTGAATGG	AAACTGACCTGCATCGGCGCAAGGGTCGCACCAAATTTGTTGGCCCAA
CTCCCCACTCGCTGGCGAAACTAATTGAATGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_041622594.1\|4164801_4165146_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177176.1\|4177101_4180137_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_006633481.1\|4160536_4160734_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177161.1\|4157830_4159546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_019729.1\|WP_015177171.1\|4168922_4169381_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NC_019729.1\|WP_015177169.1\|4167058_4167712_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NC_019729.1\|WP_015177168.1\|4166226_4166907_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|319743
NC_019729.1\|WP_015177172.1\|4169670_4170567_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_019729.1\|WP_015177165.1\|4164055_4164613_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NC_019729.1\|WP_015177182.1\|4189776_4191585_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_190274432.1\|4170971_4171700_-\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NC_019729.1\|WP_071883992.1\|4180150_4180420_-\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183801
NC_019729.1\|WP_041622595.1\|4168166_4168598_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274783
NC_019729.1\|WP_015177175.1\|4173443_4177112_-\|helicase	unknown	unknown	gnl\|CDD\|380155
NC_019729.1\|WP_015177179.1\|4181415_4183878_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_019729.1\|WP_015177162.1\|4159791_4160529_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_015177180.1\|4184411_4186043_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015177167.1\|4165959_4166181_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188
NC_019729.1\|WP_015177164.1\|4161311_4163855_+\|mannose-1-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|100097
NC_019729.1\|WP_015177178.1\|4180581_4181154_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_190274432.1\|4170971_4171700_-\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	1.11872e-112
NC_019729.1\|WP_015177167.1\|4165959_4166181_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.13569e-17
NC_019729.1\|WP_015177169.1\|4167058_4167712_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	5.12007e-32
NC_019729.1\|WP_015177168.1\|4166226_4166907_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|319743	cd16444, LipB, lipoyl/octanoyl transferase. Lipoate-protein ligase B is a octanoyl-[acyl carrier protein]-protein acyltransferase the catalyzes the first step of lipoic acid synthesis. It transfers endogenous octanoic acid attached via a thioester bond to acyl carrier protein (ACP) onto lipoyl domains, which is later converted by lipoate synthase LipA into lipoylated derivatives.	1.55714e-95
NC_019729.1\|WP_015177172.1\|4169670_4170567_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	1.6319e-78
NC_019729.1\|WP_015177165.1\|4164055_4164613_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.23252e-18
NC_019729.1\|WP_015177182.1\|4189776_4191585_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.59113e-37
NC_019729.1\|WP_015177161.1\|4157830_4159546_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	6.01255e-15
NC_019729.1\|WP_071883992.1\|4180150_4180420_-\|YciI-family-protein	gnl\|CDD\|183801	PRK12864, PRK12864, YciI-like protein; Reviewed.	2.61292e-58
NC_019729.1\|WP_041622595.1\|4168166_4168598_+\|hypothetical-protein	gnl\|CDD\|274783	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking].	2.38982e-06
NC_019729.1\|WP_015177175.1\|4173443_4177112_-\|helicase	gnl\|CDD\|380155	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA. This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.	0.000417553
NC_019729.1\|WP_015177179.1\|4181415_4183878_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_019729.1\|WP_015177162.1\|4159791_4160529_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.86687e-14
NC_019729.1\|WP_015177180.1\|4184411_4186043_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.68965e-70
NC_019729.1\|WP_015177171.1\|4168922_4169381_-\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	8.41205e-69
NC_019729.1\|WP_015177164.1\|4161311_4163855_+\|mannose-1-phosphate-guanyltransferase	gnl\|CDD\|100097	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_019729.1\|WP_015177178.1\|4180581_4181154_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.46718e-30

>NC_019729.1|WP_041622595.1|4168166_4168598_+|hypothetical-protein
MRKLVFSDTEMFYRELKTALEQSEQVEVITDYERYSDLPEKLKTIFELHKNKSGEWVNIATGAFIPSSAGVTTINYSALYIFAGAGAGAILGFIVGGPVGAAVGGGIGAIVGTLAVVTSSGRHHVDIEIDANGKLRLKISPIH
>NC_019729.1|WP_015177169.1|4167058_4167712_+|ribosome-associated-translation-inhibitor-RaiA
MKLVIQGKNIEITDAIREYVNQKVEKAVSHFQNLTTEVDIHLSVARNPRINPKQTAEVTIYANGSVIRAEESTESLYASIDLVADKIARQLRKFKEKRHDNKTHSSVKTVTAVEEHPVVADLIGDRTPELPAEVVRTKYFAMPPMTVQQALEQLQIIDHDFYMFRNAETDEINVLYERKSHGGYGVIQPRHSNGNGNSKNGKTAESATSEKSSVAKS
>NC_019729.1|WP_015177168.1|4166226_4166907_-|lipoyl(octanoyl)-transferase-LipB
MISPLIPQQLNAPPCLLLDWGLVPYSQAWEIQQKLVQERRDKPDLPDVLILLEHPPVYTLGLGAKLEFLKFDPSQTQSELHRVERGGEVTYHCPGQLVGYPILNLRRHQQDLHWYLRQLEEVLLGVLEVLGLKGSRVPGMTGVWVDGCKVGAIGIKVSRWITMHGFALNVCPDLAGFGQIVPCGIPDRPVGSLEQFIPGIEVDQVRSILVAEFARVFAVEIVRTQM
>NC_019729.1|WP_015177167.1|4165959_4166181_+|helix-turn-helix-domain-containing-protein
MIRWKLAVVMADRNISNKELAARVGMHPTSVSKIKTRRRLTRIDETTLNALCKALNCQPGDLMVYEEDEPDRT
>NC_019729.1|WP_041622594.1|4164801_4165146_-|hypothetical-protein
MADMSGQDPSEIKMATVDEEEKGATFSGTVILAIDVEGGEVLFFRDFLIEDYKGELTAYLATDGNITKSIDLGELKHKSGSFKLPIPLGTDTSPYNTVVLRDEKSKKKIVTVEL
>NC_019729.1|WP_015177165.1|4164055_4164613_+|single-stranded-DNA-binding-protein
MNSCILMAEITQQPQLRYTPENQVPIAEMLVQFPGPKPEDPPERLKVIGWGNLAQEIHDKYREGDRVIIEGRLGMNTIEIDGIKEKRAELTAQRIYSVGADAMSSAPAGRTAPEPAQIRDTAPANVPSNVVPLGSHKRSSNSAPGGANRTSSSDWNSHQSSNSESDRPSGSSNEPENPDYDPIPF
>NC_019729.1|WP_015177164.1|4161311_4163855_+|mannose-1-phosphate-guanyltransferase
MRAVLMAGGSGTRLRPLTCDLPKPMVPILNRPIAEHIINLLKRHQITEIIATLHYLPDVMREYFTDGAEFGVQMTYAVEEDQPLGTAGCVKNISELLDRTFLVISGDSITDFDLTAAIEFHRSKQSKATLILTRVPNPMEFGVVITEENYRISRFLEKPSSSEIFSDTVNIGTYILEPEVLDYLPANQECDFSKDLFPLLLEKNEPMYGYIAEGYWCDVGQLDVYRESQYDALRGKVKLDLSYYNEVRSGLWVGQNTFIDDSAIVEVPAMIGNNCRIGARVTIDAGTVIGDNVTVGADANLKRPIVWNGAIVGEDAHLRACVICRSTRVDRRAHVLEGAVVGSMSIVGEEAQVGPSVRVWPSKNIESGALLNQNLIWGEQARRNLFGQRGVQGLANVDVTPEFAVKLGAAYGSTLKPGTSVSVSRDQRSISRMVSRSLIAGLMSVGINVINLESTAIPIARTVSSTLSIAGGIHVRISPDRSDHILIEFFDIKGINITKGAEKKIEGAYFKEDLRRALIPEIGEMTYFNQALEVYNRIFERQMNVEAIRYSNTKVVIDYVYAVSGAILPQMLAKFGCDAVVLNASLKQTSLSNGEREYLLDQLGRVVKALSANFGVQVSANGEQLILVDESGIAIRGEMLTALMVNLMLTSHPKGTVVVPVHASSAVEAIARRYQSKVIRTKANPTALMEAANRNPNVVLGGSGLMGFIFPQLHPGFDGMFCIAKVIEMMTIQERSLGQIKAELPRITHRSYSVRCPWTIKGSLMRYLVETHSPDRLELLDGVKIFNYSDDNWVLVLPDASEPTVHIFANSEDRDWVSETLKEYRALVHDFVSQAEAAVLQDKFGNV
>NC_019729.1|WP_006633481.1|4160536_4160734_-|hypothetical-protein
MSTLISLALLIAYGGGIWKFWNGFDRTNFDRSFTNRLKLSLLWPALIFNKPYRQNFTKALKASKR
>NC_019729.1|WP_015177162.1|4159791_4160529_-|class-I-SAM-dependent-methyltransferase
MPKKSDRPVAGQEQTWFAKGKSDSWQVLLSQVASRFDREYRGEAFALPEEVEAMPIFLESVAGTLQEKTVSPFWKIAKPQKNQRCLDIGCGVSFLIYPWRDWEAYFYGQEISSAARDALNARGPQLNSKLFKGVEFAPAHQLNYEEAQFDLCLATGFSCYYPIDYWSIVMGEVKRVLKPGGHFVFDVLNPNAPLAEDWAILETYRAGEVFLETIEDWEKMIKAAGAKVVKKQSGDLFQMYKVQYN
>NC_019729.1|WP_015177161.1|4157830_4159546_+|hypothetical-protein
MTDSSSLANTLSEPLRQPYWWAALASVSLHGVLGVSAPTLSNILFGGNSSKNIPGSVGIVELTPAEVSRLPQTIPPKPSNTRFTPFSIAPVPLPPAPKLAPPLPPAPDTINLPAMPPGMPPPGFFSPLPPSPLPPFTAPTAPPPPKTPSPTVRTPSQPTTPTIIPPVPPSGLLFPPLPGNFDRNIPPPPSMTEAPQLPGGGSEDEAETLKKIIASRGGLPLFPDGAPVFTPEFPIGRNVGPDGVPKLTQKDPNKRNLIAETPEERIKRQQFEEGQRQLGQSGQPGANLPTDRETQLAAANTYVALFEKFKKAYPDLEMTSPTPVNVPYPVTACSQKLQGTAVFGAVVSPQGLLKAEPQPIVPTGYSILDNTAKIAIISPSLTFSAASTHKLYQLTVDFKYDEKVCSGIPATPTRPNPPGQQRPAPAPTAPRPTGQQPSPAPTEVKPQFEKPPAPSTKPQPGAKPSPSAPKPAAQPSPSPEPKPAAEQSPSPQPQPAQESPQPEAAPSPAPEVSPSPEAAPSPAPEVSPSPEAAPSPAPEVSPSPAAEVSPSPAPEVSPSPEAAPSPAATEK
>NC_019729.1|WP_015177171.1|4168922_4169381_-|peroxiredoxin
MTVKVGDTAPDFTLPSQTGTSVSLKDFKGKKNVIVYFYPKDDTPGCTTQACAFRDSYEVFKDAGAEVIGISEDSQKSHQQFAAKYQLPFTLLSDTGNKVRQLYGVPATLWIMPGRVTYVIDKEGVVKHIFDSMLDFKAHVAEALKTLETIQS
>NC_019729.1|WP_015177172.1|4169670_4170567_-|metal-ABC-transporter-permease
MIQTLIEPLQYGFMQRSLVIAILVGIVCAIVGSYLMVQRLALLGDAISHSVLPGLAIAFILGANIFVGAFIAGVLSTVIIAWIKARSTIKEDAAMGIVFSAFFALGITLITIVQKDNKIDLNHFLFGNILGVTLEDAIDTAVIVAAVLLVVVFFYKELLFYTFDPLGAQATGLPVNLLNFGLMVLIALTIVASLKAVGVVLVLSLLITPASTAYLLVTRLHQVMILGAIIGVISSISGMYLSYFYNLPSGPAIVLVASGLFVLSLLFSPTQGILTQPRTHSGQIPPIWRELKNLTKGR
>NC_019729.1|WP_190274432.1|4170971_4171700_-|metal-ABC-transporter-ATP-binding-protein
MITVKHLAVNYRTVEALRDISLSVKPGRLTGIIGPNGAGKSTLIKAMLGLIPAARGTVTWGEEAIADRLETVAYVPQRSQIDWNYPATVWDVVMMGRVRKAGWFRRFSAASRRTASDALERVGMSAYKDRPIGQLSGGQQQRVFLARALAQEAAIFCFDEPFVGVDQKTQNIIFEIFHQLANAGKIVLVVNHDLGESITNFDDLILLNTELIAAGSRQEVLTQENLYRAYGGQVMFFAGQAA
>NC_019729.1|WP_015177175.1|4173443_4177112_-|helicase
MIGEDFGRLFEVGFNIGILAYIQRENIAHNFGDSYRLDLQKLELPKMMAEITREANLLGSLDAKIVEKWSRFFVQKGFIGGLNFFREYLTSTGWTLRLSQILYFQCSLSCANSIRTQNDEETEVFKAFKKVLSQFETAQPNFSDDEINSYIRRYKKKGEFLQADTLILLQNGKDFRILCVDLSVFTPPLTSERIDNLNEIEVMRKSLIGEINYLRSKSVFSNLRIDTSTLGVDFSEDLKRYFTAFKYKDKESAKLIQAGSYAHSFYGFLQTTGIIPHDAEVLLNVVGYSDRTISAISLRSDKIDILATCAKIYQQEAKNKEINDARAEVLDAIQLNAGYSFQNGKKFVSDLLTIGKISTPVCNTERIENFANSIDIISDKLADDLQIDRGLHLRNAHAQLIVKALQSEETYIFLTGNPGIGKTTAIANFLKTHIDDGFLFLYVSPRKQVNLDIIEKFKDKNTGLLCNDRLFCINTNADIIKSNSGHCTVKYASNKYREDLTKKAVRFLKDDSEIKRTEYHQSELEKKGETVIKPINPKGNGVLKSICEGIYALINAQVSNNIVATVSIQSVKMKENRKNTLEHLDKIFQDTYNKRDKRVISAKMQEISSRIKHIFIMIDEITGDDGGVEFLAGIAKIVKKHELHKREHGFNTKIIVADASIVDCDVIKQHLDNTSPEPDKIYFKKLAKDSEEIQPLQAIPFKYNNLAAKVINANSYPARSLEITYKVFVETVKYSENAPLKQNSNLVNRVQSEIIEDINQRLAIPGVEQIIVYIQNKQRLAELIEKIKASREKFEQFTGYLEIHANISEEEKEKIQKYKNTAKVIFMTASGSRGLSFPKTKHILVDIPRFQIEKNLMEVIQVIYRGRGEDENGKTLDGEDKQLVFYLSDTAVYYADDAELSLQESKLSLLNLLLILKTAVMTRISGYGYLGREKFLMIPIGGKSVSAVGDTFSSKMAALIKTLKSESYRGDRFLKEVYTSLEELLGRGEFVLTNYDKSRQKGDSYLEMREDFNRKFLDKCNPLDGLLSYDNLEIGHVCGSLLVVPLANQSLLEKYQMRLHREIQKCVDNQLLDKMYRIRDSDSSPENVRSAIRGGAIELLQFLNGDVEKTQYFEEQSQQFDRYYAIPLFAFVSGEEMQEYFADSKLEEPEDTRFRDILSACVRSTYPIDSVMPIGHKYHEFPFIVFRSYSLEQSREKIFTDKYLLSSNELNVLNLILSKQVN
>NC_019729.1|WP_015177176.1|4177101_4180137_-|hypothetical-protein
MNSLTLGDSDLVPVDYGDLLDKILEVLQGKNPFSVSEDNRRLLIDIDAIAADVSRKQVRQPLGSFEPQADSATVNLPPEIEEHFGSQVKEIREFLRQHLELKLPPNTSIESFVANLISPLDSPSFRGNGKELGFKYDFDTRHPSLEKERLTLESRGTGSHAALKLHKLTVTVRNTDIFAQELKQGLQNYINENADTSSEKEDLNHRLDEIVKNPDSDFHKLIRLVDKETLGKIQKEAKITYLEYLLEHIRASSTDTVGIIYLEDLIRRLRLIEEYINDPTKSDGEYEVNYAGVRVNYRDIFARSEFLDALPIIPIVSGYLGESTDNSRNERKFIFGLKIKFDNSVQARGGKDVFEYYLNLLNPDSEEHQAEFDEDSNPETFVRKLLKIALLYYFVLASRNNPLAQNYDPESELNHQPKAIFEQRVLPVLQGSNDEDKKELFRNFIKGLNQFNIKHKITHLRKMLRGFLERQTILPTRTETRHVNLKIGLVEDIDNILTNGKFFNEIMERNYKQTLHYITVKEPSVDEKSICQLPVNISIEDVRYFPTDERQNFSMEYNIKDVDILPVASVPESRMSAYNNFFKQYKLLLFRYNNRRLDSGDTGLQPAAAFVYKFTMLLLSYICLRILLENTADNLFIPMVRLHEGDHNHPSPSEVFMANLSKTLSHILSEKQRSTSQGFRIKKTPNGFTIRNGLSSLYSILPKKFRFNDNVLLAPELDKLAIIVVSSRDSDAKRSNQNRFQRQASLIGEIVGINRLDDSTIQVEMLKTLSENYSVSRLYSEPLILEDVMSQLYQQGYRNFAYISQAPYMSTLHITQTEEDEELSFMSKKLLRTLKGERRDIKIYPIFFDKYYVRSFLGDKGKSFYIQDAMELESLFADTSQQAVMFFNLFNGIRVREEKNFYNGVISYSTLLNIYQGILDDQDIREGLIYDGAIKNTLLHYLTIFHFSRYEARHNISLKLDPYERIIGDESVGALSIFSHGRGSADFNSLAFLNKVREVLNVDNGGINHDW
>NC_019729.1|WP_071883992.1|4180150_4180420_-|YciI-family-protein
MTKYVMWGSYCEDVIEKRAPFRDAHLAGLAKQKESGVLSTIGPTKDLTKVFAIYEAEDEAAVRELVEADPYWVNGVWTEYDVKEWIQAF
>NC_019729.1|WP_015177178.1|4180581_4181154_+|Uma2-family-endonuclease
MTLLDIRLLTVQEYHRMAEIGILDEDERVELLAGQIVKMAAKGTAHGAAIARTKILLDNRLGEQIFVRLQDPVRLNNYSEPEPDISVVIPDPLYYEDHHPTPSEIYLIIEVADTTLRTDLGIKATIYAQSGIADYWVLDVNNRQLHVLREPSQDGYQSIVVLGDDASISSLQFPEISFMVRDMLRPLVSI
>NC_019729.1|WP_015177179.1|4181415_4183878_-|phenylalanine--tRNA-ligase-subunit-beta
MRISLKWLRELVDVAISPEELAETLTMAGFEVEEIEDRRPWASGVVLGKIIACEQHPNADKLRVCQVDVGSEEPLNIVCGAPNARADIYVPVAVVGTYLSTIDLKIKPAKLRGVPSEGMICSLAELGLAKESAGIHIFELENPELGSDIRPLLGLDDVILDLTATANRADALSMVGVAREVAALTGASLRIPAANGVAIEGKESPGLAVEISEPQGCPIYIGTAIEGVKIAASPAWLQQRLQAAGVRPINNVVDVTNYILLEWGQPLHAFDRDRLQSFTGTQDISIGVRFAKTGESFKTLDGQNRNLQAQNLLITASDKPVALAGVMGGEDTEVHEGTQNLVLEAAIFDQATIRRSARAQGLRSEASIRYERGVNQAALATACNRAVALILELAGGTATVQKTASSGDDLSFSRSLELRLDRVNLVLGQLKRGETGGSKYLEPEEVKNILTALGCEVVPTEKERVWNVTVPPYRYRDLEREIDLIEEVARLHGYDNFCDTLPSKTEPGYLSAEYAAIRNVRSAFRAAGLTELMHYSLVKTEGDNQVVLANPLFVEYSALRTEMLSGLIDAFQYNLEQGNGALNGFEVGRIFWKEEGGQDAHPTMKEADAVAGIIGGDPTVWKWQQSGRDRPLSWFEAKGILESAFQELGLSVEYQSDSSNTRLHPGRTAALSLNGKHLGVFGQLHPQLQQEKDLPEQVYVFQLDLAVLLGGLGRCSNLTRKFAGYSSFPASDRDIAFFAPVEVPVVEMQSAMKKAAGSLLDSVELFDEYRGDNVPAGQRSLAFRLIYRAGDRTLSETDVEPAQQKVRDVLVEKFGVSLRS
>NC_019729.1|WP_015177180.1|4184411_4186043_+|pentapeptide-repeat-containing-protein
MSYCVNPGCPHPQNPADSILQCQTCGARLLLRARYRVIEPLGQGGFGATFLAKDISLPGQPSCVVKQLRPSSSSPRVLEMARELFKREAKTLGQLGDHPQVPRLLDYFETEQQFYLVQEYVRGSTLKQEVKHSGRFNESDVKNFLLEILPVVQYIHSQGVIHRDIKPANIIRRVQDGHLVLIDFGAVKDQVSQTILLDPADQSANTKFSVGTFSFAPPEQMALRPIFASDIYALGMTCLYLLTGKSPKDLDFDGVTGEIVWQPHVQLSPNFARILEKMLKPMVGHRFQSAADVLRALSGEFEDPSLVDGLATQFHGSSRAVEEPTIFNDEGSSWSPPRSKINQDLRSNHTRPGRTSFSQSGNTGMQPRVSRTLAESGRTFGTVGPSSDNLAASKLSKVAPKWDTNSVRAAYFKGKRDFADCELSGLQLQKLQLAGSNFYQARLVKANLQAADLSGANLGHARLIQANLRDANLTEAYCSTANFEGADFRGADLTGAYLTKANLRGANLCGANLTNATVSDEQLAMAKTNWLTVKPDGKRSFGF
>NC_019729.1|WP_015177182.1|4189776_4191585_+|PAS-domain-containing-sensor-histidine-kinase
MNYLGNAKSVQALTVYEVWRDRFLRDRLRPAVGIAIFFAFTITVYFMGERFFARQDFESVYLYTSAAVELGLLTCFVLQKTSFGQRYPGLLFLGFSWSLTLVVQIGLAVAQAGELPIFTWTLAFLIQATLMPVRWRLHLISQLGVLCCHVGINLVLNLSFAKYTPFKLTGLYLYLFWFCLICDLSVYWYECLQRTEFSTRRELESAYQQLEAAEAKYRSIFENADEGIFQSTPDGRYITANPALARIYGCDSPEEVTAKFTDIERQLYVDPARRNEFLRSIEESGTVSDFESKIYRSDGSIVWISEKARAVRDSSGAVLYYEGLIEDITQRKQAQESLRLFIHALSHDLRNPVAGMLMVLKNWQTKTGDSIAIPRSVLERMIQGSEQQLRLINSLLEVHAGELRGLVLHCDAVDLRAIVEAAATDLEPLMNEGKATFKNLVPDDLPAVNADKTQLLRVLSNLIANALKHNLPGLNLTVSAQVIKAGKLTINQRTAKQDIDKLPITNPQSPITNPQSPIPNPGSRMIYCTVEDDGAGILPEQCENLFDLYVRGDRARHSVGLGLGLYLCRQIIGAHGGQIGVISTPGAGASFWFTLPLAENFR

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Crispr_ID: NC_019729_39

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_39

4217750-4217833

Orphan

Consensus_repeat	Method
TCAATCCAAAACCGACAATCGAAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_39

>merge|NC_019729|39|4217750-4217833|CRISPRCasFinder
TCAATCCAAAACCGACAATCGAAAATCCTTGCATCCCCCGAATTTATCTCGCGCAAGTCAATCCAAAATCGACAATCGAAAATC

>NC_019729|39|38|4217750-4217833|CRISPRCasFinder
TCAATCCAAAACCGACAATCGAAAATC	CTTGCATCCCCCGAATTTATCTCGCGCAAG
TCAATCCAAAATCGACAATCGAAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177210.1\|4220019_4224462_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_019729.1\|WP_015177208.1\|4218694_4219492_+\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NC_019729.1\|WP_015177204.1\|4215543_4216098_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_019729.1\|WP_190274228.1\|4236209_4236428_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111674.1\|4229839_4232755_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237054
NC_019729.1\|WP_015177202.1\|4214021_4214621_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|376516
NC_019729.1\|WP_015177201.1\|4211334_4213743_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NC_019729.1\|WP_015177213.1\|4234353_4236105_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369412
NC_019729.1\|WP_015177197.1\|4206945_4208418_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
NC_019729.1\|WP_015177211.1\|4224733_4229836_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|225858
NC_019729.1\|WP_015177198.1\|4208451_4209126_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293813
NC_019729.1\|WP_015177215.1\|4236762_4236975_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177203.1\|4214818_4215400_+\|manganese-efflux-pump	unknown	unknown	gnl\|CDD\|308338
NC_019729.1\|WP_015177205.1\|4216488_4217619_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_019729.1\|WP_006634808.1\|4216290_4216428_-\|photosystem-II-reaction-center-protein-K	unknown	unknown	gnl\|CDD\|214347
NC_019729.1\|WP_015177214.1\|4236481_4236712_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177199.1\|4209430_4209991_+\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NC_019729.1\|WP_015177200.1\|4210179_4210644_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177209.1\|4219660_4219960_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177207.1\|4217985_4218435_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177210.1\|4220019_4224462_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_019729.1\|WP_015177204.1\|4215543_4216098_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.58957e-36
NC_019729.1\|WP_150111674.1\|4229839_4232755_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
NC_019729.1\|WP_015177197.1\|4206945_4208418_-\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	1.0527e-60
NC_019729.1\|WP_015177202.1\|4214021_4214621_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|376516	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561. This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.	0.000273785
NC_019729.1\|WP_015177201.1\|4211334_4213743_+\|GAF-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.23095e-23
NC_019729.1\|WP_015177213.1\|4234353_4236105_-\|hypothetical-protein	gnl\|CDD\|369412	pfam07538, ChW, Clostridial hydrophobic W. A novel extracellular macromolecular system has been proposed based on the proteins containing ChW repeats. ChW stands for Clostridial hydrophobic with conserved W (tryptophan). This repeat was originally described in Clostridium acetobutylicum but is also found in other Gram-positive bacteria including Enterococcus faecalis, Streptococcus agalactiae and Streptomyces coelicolor.	4.99154e-11
NC_019729.1\|WP_015177205.1\|4216488_4217619_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_019729.1\|WP_015177211.1\|4224733_4229836_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_019729.1\|WP_015177198.1\|4208451_4209126_+\|hypothetical-protein	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	6.03212e-27
NC_019729.1\|WP_015177203.1\|4214818_4215400_+\|manganese-efflux-pump	gnl\|CDD\|308338	pfam02659, Mntp, Putative manganese efflux pump. MntP is a family of bacterial proteins with a signal peptide and four transmembrane domains. It is a putative manganese efflux pump, since deletion of the gene leads to profound manganese sensitivity and elevated intracellular manganese levels in bacteria. Manganese is a highly important trace nutrient for organisms from bacteria to humans, and acts as an important element in the defense against oxidative stress and as an enzyme cofactor.	4.27505e-50
NC_019729.1\|WP_015177208.1\|4218694_4219492_+\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	1.71856e-64
NC_019729.1\|WP_006634808.1\|4216290_4216428_-\|photosystem-II-reaction-center-protein-K	gnl\|CDD\|214347	CHL00047, psbK, photosystem II protein K.	7.88479e-16
NC_019729.1\|WP_015177199.1\|4209430_4209991_+\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	8.13232e-104

>NC_019729.1|WP_015177205.1|4216488_4217619_-|tRNA-guanosine(34)-transglycosylase-Tgt
MTEDKAKFSFKCQANCSHTQARAGVFATPHGVVETPKFMPVGTLANVKTLTPAHLEAAGSQMVLANTYHLHLQPGEAIVAGAGGLHKFMAWPGPMLTDSGGFQVFSLSQMRKITDDGVTFRSPRDGRMINLTPERSIEIQNDLGADVIMAFDECPPYPATREEVEAATNRTYRWLQRCIQAHSRPDQALFGIVQGGVFPDLRSRAANQLVDLDLPGYAIGGVSVGESGDLIAEIVKVTAPLLPANKPRYLMGIGTYREMALAVASGVDMFDCVIPTRLARHGTAFVGGERWSLKNARFREDFAPLDESCPCYTCQKFSRAYLAHLARANEVLGYTLLALHNVTELIRFTGRMREAILADRFTEEFACWLAPRVDRS
>NC_019729.1|WP_006634808.1|4216290_4216428_-|photosystem-II-reaction-center-protein-K
MEAALLLAKLPEAYSIFEPLVNVLPVIPVFFLLLAFVWQAAVGFR
>NC_019729.1|WP_015177204.1|4215543_4216098_+|glutathione-S-transferase-family-protein
MLKLYGGARSRASIVKWYLEEIAVPYEFVMLDMQAGAHLQPEYLEINPIGKVPAIVDGDFKLWESGAILLYLAQKYGKMPDTLEEQAQIVQWVIFANATLAPGIFTEATRDRETPKLLTPLNQIFEKQPFLMGDEFGVADAAVGSALAYIPMMLKLDLSPYPAVVDYIKRISERPAFKSAIGGS
>NC_019729.1|WP_015177203.1|4214818_4215400_+|manganese-efflux-pump
MDAATTILLSLGLAADAFAVAVSSGLAIKHMKVNKALKIALFFGGFQALMPVLGWFFGLSFSFLITPIDHWIAFGLLSFIGGKMIYESLQTEEGEKKFNPLDTGTLITLSVATSIDALAVGIGFAVLKTAIGPVASAIGFITFFVVFAGVFIGHKCGNLFGNKIELLGGVILIAIGSNILFSHLTEASAVISH
>NC_019729.1|WP_015177202.1|4214021_4214621_-|cytochrome-b/b6-domain-containing-protein
MPQSRPYQPLLLRLLHGVNAAIALLAILSAFLVYNTYDGRFGKVPVPQIADIIGIHGTFGKMLLLGIMPAFALYSFHAGQKRLVQPDSFGKLTQLGKPIWWYSLHRIVNTLMLLALTWAIASGSMVKEEWLPAGELTQVWYYLHASGWVVLVFCLAMHLLMSAKVGGLPLILSMFDAAYRPEDSPAAWWKKIRSLLDRS
>NC_019729.1|WP_015177201.1|4211334_4213743_+|GAF-domain-containing-protein
MRSFARVKWWKLTRLLPAELKGEYHLGYQTALLILGGTILAASITGCISYQSIRRLIITKSERNALLEVRERANKIDRWIGTRKAEIEILANTPPVRSMNWLVTEPYLKSEVNRLQEFQHFALIAPDGSYFTTKVGRALINVSDRQHFKKAMAGEVYVSDPTISRTLTKQRRIVPISAPVWSSSVNSLDKTAQKPIGVMNGVIRMERIAEVVGKLEYGAGTYAFVLNSEGVPIVHPDARLIGNIDKPASSLLESADANLANVAREMVYQKTGILLTQINGARVYVAYLPLEQAEWSIALVIPRDNIEKELLPLNILAAAVAVLVAAGIFAEIVALKLFALNCIRTRTEALLHRLTGRIRACLHLDRILQTTVDELGTLLKLDRAIFAWYDPRQDTLEFGWEYCREGLPGRLGIFGVPGGPSGDLAARLHRCETILLHKTAAPDAKASEEHAHIELRNSHYAAVPVLTQNHRLGYLFACANRRFATPDEVEVLEAIADSLAIAICQSQLHGQIQEELQLLEEVLAKLRSTEELLVQSEKMTIIGQLTAEVAREIHTPINFIYGRLIHLNDYIKDLLHVIRLYREQYPEPGPRIAKKIETCDLDFISQELPQILNFLKIGADRIRQIVLALRKFSLPDEANKERANVNESIDNILLLLAHRLEQKILVVKEYNNLPPILCYPGQISQVFASLIINAIDAVKSIENSAQIITITTDIVEESRGRFIVVAIAHNGSIIPQEIQHRIFEEFGRTKSLKNLRGLELSVCYKIIVELHGGRLTVESPVQPQIKSKTGGGAEFIVKLPVV
>NC_019729.1|WP_015177200.1|4210179_4210644_+|hypothetical-protein
MTTATVYSNAPDLCTDDYIAVGVATCFIKEEGEVFEVPVIEAIPSAALEAIVKGIPTSYLMVSGTTLGAVLDGETPKMLPEFPTSAQFSEEFAFRAIAAARTYKIRPQAQLHIPLGTVRNDFTYSLERKRVLNSERIIRTEDNVKQHEHTHKVL
>NC_019729.1|WP_015177199.1|4209430_4209991_+|sugar-O-acetyltransferase
MEKTEKQKMLAGELYLAADEQLILDRQRARRLARTYNSTREDEPDKRLEILAELFGAVGPKVEIEPPFYCDYGSNIYAGNGLYMNFGCVILDCNRVNIGENLLCGPNVQIYTALHPTDPEIRLSGLELAAEINIGNNVWIGGGSIICPGVTIGDNSTIGAGSVVVKDIPPNVVAAGNPCRIIRHLP
>NC_019729.1|WP_015177198.1|4208451_4209126_+|hypothetical-protein
MKQQSSVSKQPRPVLDNILAFGPNRDTLGATAYFIVENQTNILVDCPAWDEINQTFLREHGGVRLLFLTHRGAIAKAREIQEATGCEILIQEQEAYLLPGLKVTVFEREFVLSDRMKAFWTPGHSPGSSCLYHSGSGGVLFSGRHLLPNREAAPVPLLTAKTFHWPRQINSVKSIIDRFSPETLQYICPGANTGFLRGKRSIDRAFEKLANLDLAVCLQSKPEP
>NC_019729.1|WP_015177197.1|4206945_4208418_-|site-2-protease-family-protein
MFFLLWLFVLGLISYFLLQNGTSRITRTPIWLLWLVMMAPALIWGSWILVYGTSKTVPPELVIIPFLVCPFLYWFLVQLGRKKITAETAEQVADSETEPAKPKPPLRPIDAAEEASLRDCFPWSIYFLRDLEFRPQAVICRGQLRTNPEAAYQAIRENVERLFGDRFLVVFQNSLSGQPFFAIVPNPSHQSGETPVKTESVTKPFFALALLLIAVFTTTLVGAGFAGVTEQALQSNPSMLLQGLPYSLALIAILAIHESGHYLAARFYQIRTTLPYFIPIPFFLGTFGAFIQIRSPIPNRRALFDVSIAGPLAGLVATVPLLIWGLNHSTIVPLSDKSGMLNFESFKPNFSLLMTLLSKFSLGGALNAETAIDLHPVAVAGYLGLIVTAFNLMPVGQLDGGHIVHAMLGQRASMAIGQVARFCMLLLSFLEQGLLLWAIILFFTPLNDEPALNDVSELDNRRDFLGLMAIGLLLMILLPAPRVLLEWLNV
>NC_019729.1|WP_015177207.1|4217985_4218435_-|hypothetical-protein
MSHDQLNNRVVAPCIIDTGIVVNKRDIKRLLFDLGRVRYLHIQDGKIYSEGEGYVLEVFANPDRSTLIANHALYLNVYSFDYLELKQSPEDGAYFDLIQDGRLLRLIPLSNPLQEQFARNLNAAALDAVVDQVLSGNWDLQLDDDDSPF
>NC_019729.1|WP_015177208.1|4218694_4219492_+|adenosylcobinamide-GDP-ribazoletransferase
MVHDKWVRSTIDFFRNQGAAIAAAVAFYTCLPVPVSWTLEFRGIARLAPAIGLLIGGMLGLADVGLQLLGMPALTRSALVVVSGIAVTGGLHLDGAMDAADGLAVPDPVRRLEVMRDSVTGAFGAMAAIAIVLLKTAALSDLNNYRWLALMGVAGWGRWAQLVAIARYPYLRAEGKGAFHKESIYSPFDFIPGVLLLLSLSLVQVVLEGDRWLLAVGMALGGSAIGIFAGAWFNHRLGGHTGDTYGAVVEWTEALLLCLLAALEG
>NC_019729.1|WP_015177209.1|4219660_4219960_+|hypothetical-protein
MGYFIAAIVLGMLIWAGFEIVQTIRNWETNPEETTSNIQAEMLKETYRGQFGADALEGGSQAVGNALHAGHCAAEAGTCEAAASAIAPIVEGLLHVGHH
>NC_019729.1|WP_015177210.1|4220019_4224462_-|non-ribosomal-peptide-synthetase
MKTTADLQPKLTAVDFDPFVGGELFACVPATESQKEIWIAVQMGDEANCAYNESMCLRLQGNLDVESLRFSIQELVQRHEALRTTFSPDGSTLCIASSIELDIPVLDLSIVDDRDRESKLAHLRRQEVDRPFNLVRGPLFRSQIIKLQAQEHIVILTGHHIICDGWSWGILLPDLGAIYSARQQGLAANLPQPESFIEYAILQEENSTTAEILEVQKYWLEQFSGTIPVLDLPTDRARPALRTYQGSREDWELNRDLVVNLKRLGKKAGCSFFTTLFAAFEAFMYRLCGQEDLVVGMPAAGQLVGGKDKLAGHCVSLLPIRTRIKEEQSFRDYLRSRRTAILDALDCQQITFGTLVKKLAVPRDFSRIPLVPVTFNLDVQLAEEQLNFDGFKAEVFSNPRTCENFEWAVNASETKNKLVLECQYNTNLFDAATIRRRMAEFEVLLEGIVANPQCPLKNLPILTAAEQQQLLVEWNNTHTNYPESACIHQLFEVQAQQTPDAVALVFGEQQLTYQQLNCRANQLAHYLQTLGAGPEVLAGICLDRSIDAIVSLLAVLKAGSAYLPLDPAYPKDRLDFMVSDAQISLLLTQQNLVERLPDSGAKVICLDAAREEIDAQSEINPANLANADNLAYVMYTSGSTGKPKGVCVVHRGVVRLVKDTNFASLTAAEVFLQLAPISFDASTLEIWGALLNGAQLVVFPPGSPSLAELGEAIRLYNVTILWLTAGLFHLMVDDRIDDLKGVRQLLAGGDVLSVPHVQKLLREVPNCKLINGYGPTENTTFTCCAPIAPDSQITNSVPIGRPIANTQVYILDRHLQPVPIGVAGELYAGGAGLARGYLNRPDLTAERFIPNPFNDFRLPILDFRLGNAGEKLEIAQNQEASDRTKSNRLYKTGDLARYLSDGNIEYLGRADNQVKIRGFRIELGEIETLLTQHPDVLSTAVIDREDTPGNKRLVAYLVSKLIPERIPYHSECQLELDGKPIKLDTEDISTSGVALVGVPVLDRGRSVRLHLQLPGENEPRWLSGIVAWSRPPQTGIQFQLTPNEQNTVNQSVAYQLETQGLWKTLQRTLTGNLRDYLKQRLPDYMIPSAFVLVKELPLNPNGKVDRRALATQKWQSSDAAPNETIAVAARDQLDIQLTEIWQQVLGINSMGIRDNFFEVGGHSLLAARLLAEIEKVFDKKLPLSAIFQSPTVEQLADILREPEWSSPSPSMVVIQPGTGSYKPPLFCIHVLGRGLEFYRPLMNYIDRSQPVLGLSTQIMDEKLAPPNRVEELAAYYIKEMQNFQPHGPYFLLGVSFGGTVAFEMARQLHDLGEKVALLGLLDTYGPAAFKNSSEMKQSEGIMRILRLTPGAFMNKAKSNLIGKIEDLTEIQWRILCNLYRAVGRPLPIYLENFTHRELNHQALKNYVGGVYPGRASIFKAVESAEASGADRELGWGGVITGGIEVHEIPSNHLGMLKEPHVRILGEKLQAAVDRFQRKNL
>NC_019729.1|WP_015177211.1|4224733_4229836_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MTNSQENSELDGIAIIGMAGRFPGAASVGELWQNLCGGVESTAFFSDAELDPSIDPNLRQNPNYVKARGIIDGADRFDAAFFGVSTREAEITDPQQRVFLEIAWAALENAGCDPNTFSGSIGVYAGTGNNTYFPNNIAGRSDVISRAGEFQVMVANEKDYIATRTSYKLNLKGPSVSVHTACSTSLVAVCQAFYALMSYQCDLALAGGISITVPQNSGYLYQEGGMFSSDGHCKPFDAKAEGTVFGNAAGAVVLKRLEEAIADRDTIYAVIRGVGLNNDGAAKVSFAAPSVDGQADAIAMAQAMAGVDPETISYVETHGTATPLGDPIEIEALTQAFALKTAAKQFCAIGSVKSNFGHTIAAAGVTGPIKTALALKHRQIPATLHFEQPNPAIDFANSPFYVNAELSEWKAGKTPRRAGVSSFGVGGTNAHVVLEEAPALEPSSPSRPRQLLLLSAKTPSALDAATANLRSHLAQNPEIDLADAAYTLQTGRQAFNYRRFAVCSDRTDAVEILESLPPLRTATRCTESRNPAVIFMFPGQGSQYVNMGLNLYESEPLFRETVDRCAEILQPHLGRDLRKVLYPGSDEATAAESLRQTFLTQPAIFTVEYALSKLWQSWGIIPQGAIGHSIGEFVAATIAGVFSLEDALMLVAARGRLMQDLPGGSMLSVRLPAAEVEGRLSADLAVAAVNAPDLCVVSGPTEAIALFQQQLESESVVCKQLHTSHAFHSPMVDSIVEPFAEYVKKVQLSAPTIPFVSTVTASWITAEQATDPMYWARHLRATVRFADGIKELWQEDPNRILLEVGPRTTAATLARKQAKDLKKQVAISSLSDSHENQTEWAALLSAAGQLWLCGVSIDWQSFYQEETRDRLPLPTYPFESKRFWIEPKVSEDKSGRGGDGESERVGEWENSQFPMPDSQFPMPDSPFPITTSQLPTTNSQLPMPNSQAETQTAARKYRLIPAIKNILEETSGEDLGSVDEDLTFLEMGLDSLSLTQVALNLQKEFSIKITFRQLLETFPTLGTLSEFIDGALPPEVLPATPAVQQAAPVPAPAPPIAPPEQTAIPVPASAPVNLPLPSPGPQILHPVQSGNLEYLIGQQLQIMSRQLELLGGAGSVPAQPAPTTNGRGSAPVPAPSQPAAVQNIPQSQTHGSAIAPTAAPTAEPTAEPKKVFGAAARIDTSDRDGLTPQQSAYLETFVKRYTARTQKSKQYTQTHRHHLADPRVVSGFNRTMKELVYPIVVGRSSGSKLWDEDGNEYVDLTNGFGSNFFGYSPAFITEAIAAQMQRGYEIGPQTPLAGEVAELVCEMTKHDRAAFCNTGSEAVLGAMRLARTVTGNSTIVMFTGDYHGIFDEVIVRGTKKLRSLPAAPGIPQSAVDNTLILDYGEPESLEILKARAGEFAAIMVEPVQSRRPDLQPREFLHEVRRITEQAGCAFIMDEVITGFRVAPGGAQEYFGVQADIGTYGKVVGGGMPIGVIAGKSAWMDALDGGFWQFGDDSFPEVGVTYFAGTFVRHPLTLAAAKASLEYLKRGGPSLQRELNAKTDKFVAELNAMFDREQAPFTVKNFGSLFKITYPQDFTHGELLFYSLREKGIHIWDHRPCFLTLAHSDADIAFAKEAFKNSIAELQSAGFLTAPSGATVKVLEFNKNGNTNGSKSSTVFASNSPVPGAKLGRDPNGNPAWYIADPERPGKHLQVGDSLSN
>NC_019729.1|WP_150111674.1|4229839_4232755_-|amino-acid-adenylation-domain-containing-protein
MQQPDILKAETFWRQYLSGFSAPTPLVGAVSRAGKILNPKDRQGINSLSNSESPLKRTEELISPLQRTSALRQGINSLPDCGFDPKFTPMASCLFLTPPEIRLSSTVTAALNSLIKEHNITLNTLLQGAWALLLSRCSGSEDVVFGAICNSRSQNIENAESAVGLFINTLPCRVIVSPDLPAIDWLKQLQTQWTAFQEYGNVPLAKTQEWSEISRGTALFESLLVVEKYHINSALQALGGNWQNREFQLLEQTSFPLTVYAYGGTELLLKIAGDRQRLDPIAITRMLGHLQTLLESIAANPQQKISKLSMLTAAELAQLQEWNQTQANYPQDKCVHQLFEAQVDRSPDAIAAVFSQNLQQQLTYLELNSKANQLARYLQQLGVGPDVLVAICMERSLEIAIAVLGVLKAGAAYVPLDPAYPQERLTFMLADTQTPVILTQSHLVSGLPAHQARAVCLDADWETISSHSTENPPSSVSPDNLTYTIYTSGSTGKPKGVPLPHRALVNLIAWQLQNSTLEGPAKTLQFASLSFDVSFQEMFCTWCAGGTLVFITEEIRRDAQSLLQLIDKQKIQRLFLPFIALQHLAEAADTYQLIPKSLREVITAGEQLQVNRYIASFFQQLENCTLHNQYGPSESHVVTAYTLAGPPGDWPALPPIGRPLANTQIYLLHRNYESVPIGVPGELYIGGICLARGYLNRPDLTAEKFIPNPFKHNEIRAIEQESDITLLPSEDRLYKTGDLARYLSDGNIEYIGRIDGQVKIRGFRIELGEIETALAKHRAVKQAVVLAREDVPGDKRLVAYIVANPEEQLAIADLRRYLQEQLPDYMVPAVFVNVEAMPKTPSGKIDRRALPAPDSQRQEQSQSYAAPQSELELLLAGVWSKLLKLDRVGIHDNFFEIGGNSLMTLQVAVQVRTLLGKDLPVVKLFQHPTIAQLANYLNEGKSASQSNNKFQDRADRQKAAFKRQKQSTKKP
>NC_019729.1|WP_015177213.1|4234353_4236105_-|hypothetical-protein
MEAAHKDLLQQIARLSDTYPNLADRLSQAAKQLQDSGLPPSDSLLQEVATYSRNFAAVQKQALELNKSAIAPGEIASLKDIQNLAETAAASEGKASIRDAALKAIDRVLAIAHREQSDFAPLQLVHARARELQRAISESTPTQLHSDAESLVSGKHPVAAVLALVEQQDKLDDEQWVFLEETVSAAFGKQIAVAISRGKLTIAEMVKAAPAKVEPAFKAAPEQKISAEPLPEVIVIPSGNVAPKQVTVAPQIQILESPAPSAPMHEVIIVPSVEVPKSLQTTGSGNIVFGAPRDIQPAVAVEGGLGIKVLVHIQGIGDRTFGAGEYAGSKGQGRRVEGFQINIDPPIPGLNVEYMAHVEGVGDTPWIGEGELAGFRGQAKRIEGFAVRLSGPQADKYDVFYSAHIQNIGDTDVSSNGAYCGTRGKALRIEGIKVWIAPSASSQTAAPVGLKVLAHIQGIGDRTFSDREYAGTKAQGRRVEGFQIKIEPPVAGLNLQYMAHVEGVGDTPWISEGELAGFRGKAKRIEGFAARLTGPQADKYDVFYTAHIQNVGDTPVTANGQYCGTRGKGLRVEGMTVWVEPKG
>NC_019729.1|WP_190274228.1|4236209_4236428_+|hypothetical-protein
MLLLSESPTQTLSDSPAQTPGHSRTPHSRTPPLASPTRSPSQPCKYLVTLCDSGCHEWPVTMSHLSSNSRHC
>NC_019729.1|WP_015177214.1|4236481_4236712_+|hypothetical-protein
MVLIREIAQQALALGYLTIEAENQLRRMLTTTKYDLEDLNAFMALQLAAMSGGVKQESRELKKFEVFGETASETSC
>NC_019729.1|WP_015177215.1|4236762_4236975_+|hypothetical-protein
MQIREVVKQAIAAGYLSLEAENEMQNIFSSAKCDLEDLNAFMSLQLAAMAGRVRQESLELITMPSFSERN

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Crispr_ID: NC_019729_40

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_40

4644663-4645729

Orphan

Consensus_repeat	Method
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	CRISPRCasFinder
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	CRT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	PILER-CR

14 spacers

The CRISPR arrays of NC_019729_40

>merge|NC_019729|40|4644663-4645729|CRISPRCasFinder,CRT,PILER-CR
ATATCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACTCAACACCATACGTCAAGATGCCTTGGAAAAAGGAGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACCGAAGTTACGATAGAGGTTACGGTTAGCGACAGCTAACGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACATTATTTTTGTATTAGCATTAACACAAAAGCTTCGGGAGATTTGTGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACTCCAACGCTCTGGTTTGGAAGCCAGGAGATAGTGAAATGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACTCCGTCAGAAGGGCAAAAAGAAGGGAAAGGTTTTGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACATTCAAGGAGTCAAATGAATATCGCGACTATCACGTTGCGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACGAAGGGCATGAACTACAGGGTCGGAAACACTTTGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACATTTACAAAAGGAGGAGGTTCAAAAAAAAGTCGGGAAAAATCAGGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACAAACAGAGGATTTTCGTGCCGAGCTTATTACTGTAAGCGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACACTTTTGGCAAATTTCACAACCTTTAACGGTGATTGGTGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACATTCAAGGAGACTTCGATGCCGGCACAATGTCGGTGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACTCTTGACATCTGTTTGAGAGGGGATATTTTTAAACAGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACACAACTCTACCTTCTGCGAAATTTGTCAAAAAGAAGGTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGACTCTGGTGGAGTTAGCTCCACTGGAACCAGCACAATGATGTTTCAATTCCCTCTCGGGGAAGTGGTAAAGGAGAC

>NC_019729|40|39|4644663-4645729|CRISPRCasFinder
ATATCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCAACACCATACGTCAAGATGCCTTGGAAAAAGGA
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	CGAAGTTACGATAGAGGTTACGGTTAGCGACAGCTAAC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTATTTTTGTATTAGCATTAACACAAAAGCTTCGGGAGATTTGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCCAACGCTCTGGTTTGGAAGCCAGGAGATAGTGAAAT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCCGTCAGAAGGGCAAAAAGAAGGGAAAGGTTTT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTCAAGGAGTCAAATGAATATCGCGACTATCACGTTGC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	GAAGGGCATGAACTACAGGGTCGGAAACACTTT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTTACAAAAGGAGGAGGTTCAAAAAAAAGTCGGGAAAAATCAG
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	AAACAGAGGATTTTCGTGCCGAGCTTATTACTGTAAGC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ACTTTTGGCAAATTTCACAACCTTTAACGGTGATTGGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTCAAGGAGACTTCGATGCCGGCACAATGTCGGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCTTGACATCTGTTTGAGAGGGGATATTTTTAAACA
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ACAACTCTACCTTCTGCGAAATTTGTCAAAAAGAAG
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCTGGTGGAGTTAGCTCCACTGGAACCAGCACAATGAT
GTTTCAATTCCCTCTCGGGGAAGTGGTAAAGGAGAC

>NC_019729|40|5|4644663-4645729|CRT
ATATCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCAACACCATACGTCAAGATGCCTTGGAAAAAGGA
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	CGAAGTTACGATAGAGGTTACGGTTAGCGACAGCTAAC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTATTTTTGTATTAGCATTAACACAAAAGCTTCGGGAGATTTGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCCAACGCTCTGGTTTGGAAGCCAGGAGATAGTGAAAT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCCGTCAGAAGGGCAAAAAGAAGGGAAAGGTTTT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTCAAGGAGTCAAATGAATATCGCGACTATCACGTTGC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	GAAGGGCATGAACTACAGGGTCGGAAACACTTT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTTACAAAAGGAGGAGGTTCAAAAAAAAGTCGGGAAAAATCAG
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	AAACAGAGGATTTTCGTGCCGAGCTTATTACTGTAAGC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ACTTTTGGCAAATTTCACAACCTTTAACGGTGATTGGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTCAAGGAGACTTCGATGCCGGCACAATGTCGGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCTTGACATCTGTTTGAGAGGGGATATTTTTAAACA
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ACAACTCTACCTTCTGCGAAATTTGTCAAAAAGAAG
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCTGGTGGAGTTAGCTCCACTGGAACCAGCACAATGAT
GTTTCAATTCCCTCTCGGGGAAGTGGTAAAGGAGAC

>NC_019729|40|7|4644734-4645729|PILER-CR
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	CGAAGTTACGATAGAGGTTACGGTTAGCGACAGCTAAC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTATTTTTGTATTAGCATTAACACAAAAGCTTCGGGAGATTTGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCCAACGCTCTGGTTTGGAAGCCAGGAGATAGTGAAAT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCCGTCAGAAGGGCAAAAAGAAGGGAAAGGTTTT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTCAAGGAGTCAAATGAATATCGCGACTATCACGTTGC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	GAAGGGCATGAACTACAGGGTCGGAAACACTTT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTTACAAAAGGAGGAGGTTCAAAAAAAAGTCGGGAAAAATCAG
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	AAACAGAGGATTTTCGTGCCGAGCTTATTACTGTAAGC
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ACTTTTGGCAAATTTCACAACCTTTAACGGTGATTGGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ATTCAAGGAGACTTCGATGCCGGCACAATGTCGGT
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCTTGACATCTGTTTGAGAGGGGATATTTTTAAACA
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	ACAACTCTACCTTCTGCGAAATTTGTCAAAAAGAAG
GTTTCAATCCCCTCTCGGGGAAGTGGTAAAGGAGAC	TCTGGTGGAGTTAGCTCCACTGGAACCAGCACAATGAT
GTTTCAATTCCCTCTCGGGGAAGTGGTAAAGGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177528.1\|4651633_4652503_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349893
NC_019729.1\|WP_015177524.1\|4648973_4649393_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379205
NC_019729.1\|WP_015177510.1\|4630184_4631288_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NC_019729.1\|WP_190274437.1\|4646247_4646640_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|377905
NC_019729.1\|WP_015177512.1\|4631801_4633577_-\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_019729.1\|WP_015177529.1\|4652689_4656376_+\|oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|215358
NC_019729.1\|WP_015177520.1\|4643407_4644298_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239591
NC_019729.1\|WP_015177525.1\|4649389_4649689_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177518.1\|4639500_4640559_+\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|367001
NC_019729.1\|WP_015177519.1\|4641187_4642975_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NC_019729.1\|WP_041622629.1\|4636266_4639080_+\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_019729.1\|WP_015177516.1\|4635731_4636247_+\|type-IV-pilin-like-G/H-family-protein	unknown	unknown	gnl\|CDD\|374761
NC_019729.1\|WP_015177526.1\|4649740_4650412_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177514.1\|4634425_4634986_+\|paraslipin	unknown	unknown	gnl\|CDD\|259811
NC_019729.1\|WP_015177523.1\|4647886_4648960_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_019729.1\|WP_150111563.1\|4645746_4645926_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177527.1\|4650413_4651586_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379050
NC_019729.1\|WP_015177522.1\|4646793_4647612_-\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273227
NC_019729.1\|WP_015177515.1\|4635102_4635624_+\|type-IV-pilin-like-G/H-family-protein	unknown	unknown	gnl\|CDD\|374761
NC_019729.1\|WP_015177513.1\|4633752_4634298_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|376684

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177528.1\|4651633_4652503_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349893	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.6533e-96
NC_019729.1\|WP_015177524.1\|4648973_4649393_-\|PIN-domain-containing-protein	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	2.99561e-16
NC_019729.1\|WP_015177510.1\|4630184_4631288_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	5.3299e-27
NC_019729.1\|WP_190274437.1\|4646247_4646640_-\|chorismate-mutase	gnl\|CDD\|377905	pfam07736, CM_1, Chorismate mutase type I. Chorismate mutase EC:5.4.99.5 catalyzes the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine.	7.16836e-67
NC_019729.1\|WP_015177512.1\|4631801_4633577_-\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NC_019729.1\|WP_015177520.1\|4643407_4644298_+\|fatty-acid-desaturase	gnl\|CDD\|239591	cd03514, CrtR_beta-carotene-hydroxylase, Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	4.38583e-85
NC_019729.1\|WP_015177518.1\|4639500_4640559_+\|potassium-channel-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	1.3014e-32
NC_019729.1\|WP_015177519.1\|4641187_4642975_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NC_019729.1\|WP_041622629.1\|4636266_4639080_+\|AAA-like-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.30812e-74
NC_019729.1\|WP_015177516.1\|4635731_4636247_+\|type-IV-pilin-like-G/H-family-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	2.71238e-42
NC_019729.1\|WP_015177514.1\|4634425_4634986_+\|paraslipin	gnl\|CDD\|259811	cd08829, SPFH_paraslipin, Paraslipin or slipin-2 (SLP-2, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in all three kingdoms of life. The conserved domain common to these families has also been referred to as the Band 7 domain. Individual proteins of the SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. This subgroup of the SLPs remains largely uncharacterized. It includes human SLP-2 which is upregulated and involved in the progression and development in several types of cancer, including esophageal squamous cell carcinoma, endometrial adenocarcinoma, breast cancer, and glioma.	1.41886e-41
NC_019729.1\|WP_015177523.1\|4647886_4648960_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.226e-18
NC_019729.1\|WP_015177529.1\|4652689_4656376_+\|oxoprolinase-family-protein	gnl\|CDD\|215358	PLN02666, PLN02666, 5-oxoprolinase.	0
NC_019729.1\|WP_015177527.1\|4650413_4651586_-\|ATP-binding-protein	gnl\|CDD\|379050	pfam13175, AAA_15, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	2.21658e-31
NC_019729.1\|WP_015177522.1\|4646793_4647612_-\|signal-peptide-peptidase-SppA	gnl\|CDD\|273227	TIGR00706, Putative_signal_peptide_peptidase_SppA, signal peptide peptidase SppA, 36K type. The related but duplicated, double-length protein SppA (protease IV) of E. coli was shown experimentally to degrade signal peptides as are released by protein processing and secretion. This protein shows stronger homology to the C-terminal region of SppA than to the N-terminal domain or to the related putative protease SuhB. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.43353e-102
NC_019729.1\|WP_015177515.1\|4635102_4635624_+\|type-IV-pilin-like-G/H-family-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	5.70775e-36
NC_019729.1\|WP_015177513.1\|4633752_4634298_+\|NfeD-family-protein	gnl\|CDD\|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	3.64984e-11

>NC_019729.1|WP_015177520.1|4643407_4644298_+|fatty-acid-desaturase
MSEAGRPLTVPKEFLSPPGDLNPTLLLFLSAVVIIVVSYLGFWYWEWPQWCCFLLNVLALHMAGTVIHDASHNAAHRDRTINAILGHGSALMLGFAFPVFTRVHIQHHAHVNDPDNDPDHYVSTGGPLWLIAARFFYHEIFFFKRKLWRKNELWEWFFSRLFVVAVVYIAILYDKLGYVMNFWFSPALVVGLALGLFFDYLPHRPFHERDRWKNARVYPSPILNILILGQNYHLIHHLWPSIPWYNYKPAYEAVKPLLDEKGSPQTLGILEGKKDFWSFIYDIFLGIRLHHKKASD
>NC_019729.1|WP_015177519.1|4641187_4642975_-|pyruvate-kinase
MQLPKALRRTKIVATIGPATSDPQVLRQLIEAGATTLRLNFSHGTEEDHQRSIRLIRQTSFELNQPVAILQDLQGPKIRLGRFETGSIVVKNGDPFILTSRPVPGTELISSVTYDPLAEEVPEGSMILLDDGKVEMLVEKVDRAARELYCRVVVGGPLSNNKGVNFPGVYLSIKALTDKDRKDLMFGLDQGVDWVALSFVRNPQDVLEIKELIASAGKQVPVIAKIEKHEAIEQMEEILTLCNGVMVARGDLGVELPAEDVPILQKRLIATSNRLGIPVITATQMLDSMVNNPRPTRAEISDVANAILDGTDAVMLSNETAVGKFPVEAVATMARIAVRMEKEGIKRNIRNVEDIGRSIPNGISQAVSQISEQLNAAAIMTLTKTGATARNVSKFRPKTPILAVTPHVDVARQLQLVWGVKPLLVLDLPSTGQTFHSAMTVAQEKELVCDGDLVVMTAGTLQGVAGSTDLIKVEVVTAVLGKGTGVGLGSVSGLARVARTAADVGNFHPGEILVVEHTSVAFVEMIRKAAGVVTEEDSLTSHAAIIGLRLGVPVMVGVKNATRVIRDGTMLTLDMQRGLVYSGARGGSTDTEVTV
>NC_019729.1|WP_015177518.1|4639500_4640559_+|potassium-channel-protein
MYSTLEKKYQRLQKDLMGGVLALGGIVCTGTLWYWQVEKWPLLDAAYMTVFTLATVGYGELHPLGQRGRMFTICLILMGVIVIGFIVNRFTEALIQGYFQEGARIRQQRRLVDSLIGHYILCGFGRTGRQIALEFQAENIPFVVIDSAVPSVEAALALGYTAVQGDATLDETLLNVGIDRAICIVAALPSDAENLYTVLSAKTLNPKVRAIARATTEEAVKKLQRGGADAVVSPYITGGKRMAAAALRPQVMDFVDGVLTGTESSFYMEEFLVDPNTCVYVGQTLRNAKLRSQSGALVLAVRRAGGTLIVGPTGETAIEGGDMLICLGTAEQLRTLNQILSPLSFRLPRPPN
>NC_019729.1|WP_041622629.1|4636266_4639080_+|AAA-like-domain-containing-protein
MTVDYQYQIGGSLPQNSPTYVVRQADSELYQALKAGEFCYVLNSRQMGKSSLLVRTVQKLSADGIACATIDLSDIGNQQVSLDKWYGGVAYKLLCSFNLFNPVEFMAWWRERELMSPVQRLGELIEELLLVKISQNLVIFIDEIDSVLSFQEPLDDFFALIRCCYNKRAHNSEYQRLTFALLGVATPSDLISDATRTPFNIGLAIELHGFKLQEALPLAKGFEGKVDNPQEVLKEILDWTGGQPFLTQKLCKLILHHVKSLASASIISESTDESKTEFFTTNQLLISEIVQADIIDNWESSDEPVHIKTIRDRLLRSQHRASRLLGLYQKILPLSEPPDCRGCAPVPALAGGICADDTPEQTELRLSGLVVKRAGKLTVSNRIYAAIFSHNWVEKALGDLRPYAESLTAWIATNCQDESRLLRGQALEDAQQWAANKSLSTQDYQFLGASQEAEFAKLRDREKQTQTEIEQLRREKKLLEELSEAQKQKKAIAVKLWREQQLRVQTVTGAAVILISILIVAFWVKPSIEERNNKILTLTLLSETLFAADKKEEALLESIRAVKEMKGSLGVSSDIQMRAAIALEQAVYSFRERRRLQTQASTLAFASFSPDSQTIVTATDDNSIKLWQTKGTLQATLTGHTAKIRNAIFSPSGQLIVSASDDKTVKIWQKNGQLIHDLKGQNCKITTVSLSPDSKIIASAGTDGTVKLWKINGEELLSLKVERGWITSTSFSPDGQIIAAAGTDGTVKLWSLTKVVEKMQKQQSIEASTDIKLLRTLQMESDKIMTVTFSPDGAMLAAASAGGTARIWSQDGTPLSIFKHTSGLTNISFSPDSQMLLSASTDKMVRLWNVDGTLLKTLKGNKDAVRSASFSPDGKAIASASADGTVMLWNLNLDDLLVQGCNGARNYFQTNPIANPNNRHLCDGIGTGSELTQKKPG
>NC_019729.1|WP_015177516.1|4635731_4636247_+|type-IV-pilin-like-G/H-family-protein
MSQQDSKSASILPNGCGCLLLLMGMGVIGAIALPSFLNTSHSCRIPEAKLYVSSMNRAQQALFIEKNAFATSVDALGIGIKTETTNFKYSIRATKKAVFNYGLSKKKDLKSYVGGVFLVPAKNFEPHAAKEEITTTSIFCQADSPGTIEPVEPTYENGKIACGKGTTPVTR
>NC_019729.1|WP_015177515.1|4635102_4635624_+|type-IV-pilin-like-G/H-family-protein
MTNNQESIVRNAACRGCGCLLLITGIGVLNGIALPFYLNNTNRSQQSEAQQYVSSMNKAQQAYFAKKRLFSSSVNALELGIKTETTNYKYSVRATKQTAFNYGVSKQPQLKSSVGGVFLVPVKKIEPNAAKEGIITTISIFCQADSPGTIKPAEPTYENGKIACGKGTRQVTK
>NC_019729.1|WP_015177514.1|4634425_4634986_+|paraslipin
MYQYFLTVLFAITGVSLVNSVKIVRQGDEALVEIFGKYDRKKLEPGITFLIPFVEQVAYKQTLREQILRLSPQECTTRDRVAVTVDFIVYWRIIDLEKASYKVQNLKEAMLNMLILSIRTHLAKLSVEELYTARHEINNALVEELDTTTDPWGVKFTRVELRDFAIGSKVIQPTSIDRKEVQKLRA
>NC_019729.1|WP_015177513.1|4633752_4634298_+|NfeD-family-protein
MYSILIWSLASATNQPGFAFTPPMLWLLIGVVLSAMEVLIIKTQPQKYRFYLLMMGASALIESFILWRGSVAFQFSWANIMYEDFDWQIFYWMGIALALSIWIRPIFIVRKKFVIPEATEARTISEIFPGETGMVIYEGASWKARNEDSQGAIAPRQKVYVLRREGNTLIVVPDRLIHINS
>NC_019729.1|WP_015177512.1|4631801_4633577_-|AAA-like-domain-containing-protein
MPRSLRVREECIRAVKSCLLRNGFPSQKILAEDLGMAQSTVSHFLNGKPVDYANFIEICRGLGQEWRDIADFEANSDPEEVVLVRAKVAIVFEDSANALTTSHNTLSQQLHQALSDRGHEVFFINNSSDSSSYLKGCDYLLLLISEESAASEMILEQVQLAKESHNLTAHKPAILPILVEVNTPLSFDLLSYLAGIQPWLWRGVGDSFKLLSQILTIIKEGRTLLTADHELAVEWKAITSTKQAIIQPLPAAPPELPGGQVEITSCFYIDRPPIESRCYETIAQPGALIRIKAPRQMGKTSLMARILYHAEQQGSRTVALSFQLANRKIFANSDTFLQWFCASIGQELGMLEQLPKCWELADLIGSNQCCKAYFEQYLLSESSKPLTLGLDESDRLFESPEIADDFFGLLRALHEEAKRRDIWKKLRLIVVHSTEVYIPLDVNKSPFNVGLPIDLPEFYSPQVQDLAKRHGLNWSGNEVAELMGLVGGNPYLVRLGMYHIARQDVTLDRLVKESATEAGIYSDHLRRHLWNLEKYSELMEAMREVVSVSQPVRLRSELGFKLNSMGLVKLDGNHCIPRCRLYQEYFGDRLG
>NC_019729.1|WP_015177510.1|4630184_4631288_-|iron-containing-redox-enzyme-family-protein
MQNTADLLPKIDSPSLPKKQLVLPNYEAADRQFVNLLEVEDLDKTVAAKPLLVSDLESAIAYAIQAAYQQEPKGDEAAHRFLQRVLYRINRLNLFWYDDLRRYNNERSHYLRSVRDRIEEPWQQWEIAQINVAALQKLPDVKQALRDRAAADVDPPLTELDRYLREQMTAAGYRHLLAIASFDGLVEASRLSRILGGAGNEIQSTLTRVLIEEYGGGRLPRKHSTFFAQMLAEFDMSTEPEAYFDLVPWQVLAGINHNFLLTERKRHFLRYNGGLTYFEVAGPVAYRNYLAAAQRLGLSQAAMGYWELHIKEDERHGRWMLDEVAIPLVDRYPQEAWELVLGYDQEKSIGDRAAAAVVRSIQATEHN
>NC_019729.1|WP_150111563.1|4645746_4645926_-|hypothetical-protein
MSIDAPRAIGKTLILSLRCVDCSHTKGYGLQATELIAGFTVLLTGKKWCVDLRLETLSG
>NC_019729.1|WP_190274437.1|4646247_4646640_-|chorismate-mutase
MEWQVRGIRGATTASENSVAAIREAVRELLDELEAKNDINPELIISATFSATRDLDAVFPAAIARERPHWCNVALLDVQQMHVEGALERCIRFLILVNWPAHTEIYHPYLRGAQNLRPDRNLAVAVAGEK
>NC_019729.1|WP_015177522.1|4646793_4647612_-|signal-peptide-peptidase-SppA
MIWPFKPRYRKQIARIEITGAIAGETRKRVLEALKTVEERKFPALLLRIDSPGGTVGDSQEIYSALKRLREKVKIVASFGNISASGGVYIGMGAEHIVANPGTITGSIGVIIRGNNLERLLEKVGVSFQVIKSGPYKDILAFDRELTDPEQQILQDLIDTSYQQFVETVAAARSLAVEKVKSFADGRVFTGQQALELGLVDRLGTEEDARRLAAELAGLDPDKTESCTLEKQKPFLNRVLGSSLDISGLWAYNNLLEFELSTSGLPLWMYRP
>NC_019729.1|WP_015177523.1|4647886_4648960_+|DMT-family-transporter
MQLKLTDSKLPFAPLLLIAPFFLWGTAMVAMKGVMPHTTPLFVAFVRLVPAGVLVLLAAAFMGKPQPQGWKAWLWISLFALVDATLFQGFLAEGLARTGAGLGSVMIDSQPLAVAILCLWLFQEKIGFWGWLGLVIGVAGISLIGLPDGWILGLLHPENAPVSAGIEQLFQGGEWLMLLAALSMAVGTVLVRWVCRYVDPVVATGWHMILGGLPLLAISAATESEQFVNIDFSGWMALGYSTVFGSAIAYGLFFYFASSGSLTSLSSLTFLTPVFALVFGNLLLGEVLNPLQSMGVGLTLVSIYLINQRDTLGDKLRKVRHGEASAEVETAGLLESSDLNSVELPVQLRVSELESEV
>NC_019729.1|WP_015177524.1|4648973_4649393_-|PIN-domain-containing-protein
MKILIDTNIIVDVALEREPFSAESDRILTLAEEAQIQGYISASTFSYLYYIIRRDRGRDWTLDFWRQLATFCQVATVDNSVISMALTCNFKDFEDAIQYSTAVINRIDAIVTRNPRDFPVITPRIVTPNQLIQELTNSP
>NC_019729.1|WP_015177525.1|4649389_4649689_-|hypothetical-protein
MQAYKLRGKIDATGNLVVLESVDMPPGDVEIIVLQLPDTVKQVSASENAIAPEAAKKKFKTNVKAFQGLFDRDAVPEPLDFEDPDKQAKWEYLKEKHNL
>NC_019729.1|WP_015177526.1|4649740_4650412_-|hypothetical-protein
MISFGLVTEGLTDQIVIENILAGYFNSPDLDIRQLQPERDKDNENKSTYGGWTLVFNYCKSRDFQEALQFIDYIIIQIDTDVSEDYNIPKQDENGEFTPQQLIAKVIEKFRSAIGDNFYSKYQQKIIFAISVHSIECWLLPLYYTDKKKKSQFKNCLDTLNPQVYKKHKFRIDAKNPEYYRIISKPYRKHKVLMNHYPENPSLNFFIEEIKSRDIKIGGEEDW
>NC_019729.1|WP_015177527.1|4650413_4651586_-|ATP-binding-protein
MIGEVRIENYKSIQKLKLELGRVTVLIGENGCGKSNILEAIALASAAADDKLDNEFLASRGIRVTEPQFMRSAFEIDNLIKDIKIDLKGNEVQPFSCILQNDNSPYSQWVRKNFLGDLETFLKTAVKSVSDKYGGDEKIRSILLGEETNFSQQELSKFAKELQSFSLIISLNNFIIYSPENQALRTFEKEGQIQPLGIKGEGLFKLINFLNSDKNQDKLDEIKQKLRLIDWFKDFEVPQNLAAMQTSIQIQDRYLDKDLSYFDQRSSNEGFLLLLFYFTLFISDITPKFFAIDNIDASLNPRLCRRLMQELVELAKKHDKQVIFTTHNPAVLDGLDLEDDEQRLLVISRNQLGYTKARRILGPKPLEGQEPVELSEAFLRGYIGGLPKNF
>NC_019729.1|WP_015177528.1|4651633_4652503_+|M20/M25/M40-family-metallo-hydrolase
MNLKERLHSHLIQIVRDRNPYLASEGHFYAQQYIREQWAQWGTVKIDDFSVRGRIHHNFILDLPPLSPPLAKGGKQEKKQEKPIVIGAHYDTVPGTPGADDNATGVAVLLELARDIASAPLKYPVQLVAFDMEEYGCLGSSHHAAKYKQQQKSIRLMISLEMLGYCNHNSNSQSYPAGLKYFYPNSGNFIALIGTLRTVPDLINLSGKIRKSGQPCEWLPVPNRGLIVPDTRRSDHVPFWDNGDPAIMVTDTANMRNPHYHRESDRIETLDLDFLAGVCQGLVEAIRYI
>NC_019729.1|WP_015177529.1|4652689_4656376_+|oxoprolinase-family-protein
MNAVFDDRTRWQFWIDRGGTFTDIVAKNPDGKLVIHKLLSENPERYTDAAVQGIRDILGIGADFPIPAAQIEAIKMGTTVATNALLERKGDRTILLITKGFGDALRIGYQNRPNIFARHIVLPQMLYDRVIEVAERYSAQGEELTAVNPEFIPCLQQAYDEGIRSCAIVFMHGYRYSEHEKQVAKIAREIGFTQISVSHEVSPLMKLVSRGDTAVVDAYLSPILRRYVEQVTSQLSPVGAVPPCPPSPCPPPKLMFMQSNGGLVEATQFQGKNSILSGPAGGIVGAVQTSKKAGFDKIITFDMGGTSTDVAHFNGEYEREFETEIAGVRLRSPVMAIHTVAAGGGSIVFFDGARYRVGPESAGANPGPACYRKGGPLTVTDCNVMLGKIQPDFFPKVFGLNGDLPIAPDVVKQKFGQLAGEIGGERTAEQVAEGFLAIAVEKMANAVKKISLQRGYDVSEYTLCCFGGAGGQHACAIADALGMKRVFIHPYAGVLSAYGMGLADVRAIRERAIEQQLNAALLPDLHYILTELEADGKRELNRRGADNTEDKSEVLVVKKLRLKYQGSDSVLAVNFADKIEVMQAEFEAAHRQRYSFIMPEKPLIVEAVSVEVVERMDVPEASTISPSCGTGILPVQPISTVQMYVAGGWRATPVYQRDDLRSHDCISGPAMIVEATGTNIIEPGWEAEITENNDLILNRRCTQMDADSIRVHPRLSAVTSDPVLLEIFNNLFRAIAEQMGVTLQNTSSSVNIKERLDFSCAIFDKNGQLVANAPHIPVHLGSMSESVEALILARGNAIQPGDVYVSNNPYNGGTHLPDITVITPVFDRDSSLPLFYVASRGHHADIGGITPGSMPPNSTTVTEEGILLDNFLLVSEGNFREKELLELLTAGNFPVRNSAQNLADLQAQIAANKRGAEELLKMVEHYGLKTVQAYMGFVQDNAEESVRRVIDVLQDGEFTYPMDSGGQIKVAITIDKSARSAKIDFTGTSGQQTNNFNAPAAVCKAAVLYVFRTLVDDDIPLNAGCLKPLEIINPEGCMLNPRYPAAVVAGNVETSQNITDALYCALGVMAASQGTMNNFTFGNQRYQYYETICGGSGAGADFDGTDAVQTHMTNSRLTDPEVLEWRFPVLLESFAIRANSGGNGYHRGGNGVVRRVRFREAMTAGILSGRRVISPCGLNGGEVGKVGRNYVERVDGKVEDLGSTASVEMQSGDVFVIETPGGGGYGYL

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Crispr_ID: NC_019729_41

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_41

4700659-4700758

Orphan

Consensus_repeat	Method
TGCGCGTTGGAATGAATCCGGGGGCTTGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_41

>merge|NC_019729|41|4700659-4700758|CRISPRCasFinder
TGCGCGTTGGAATGAATCCGGGGGCTTGCGATTTTAGATTTTAGATTTTAGATTTATTCCCGTCAGCTTGCGCGTTGGAATGAATCCGGGGGCTTGCGAT

>NC_019729|41|40|4700659-4700758|CRISPRCasFinder
TGCGCGTTGGAATGAATCCGGGGGCTTGCGAT	TTTAGATTTTAGATTTTAGATTTATTCCCGTCAGCT
TGCGCGTTGGAATGAATCCGGGGGCTTGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177556.1\|4691647_4692331_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_019729.1\|WP_015177555.1\|4690924_4691518_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|274368
NC_019729.1\|WP_015177570.1\|4706443_4708513_-\|MASE1-domain-containing-protein	unknown	unknown	gnl\|CDD\|306677
NC_019729.1\|WP_015177554.1\|4690161_4690839_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019729.1\|WP_041622636.1\|4697092_4698037_-\|FTR1-family-iron-permease	unknown	unknown	gnl\|CDD\|223744
NC_019729.1\|WP_015177571.1\|4708659_4711632_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|306677
NC_019729.1\|WP_015177567.1\|4702247_4703579_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NC_019729.1\|WP_015177568.1\|4703967_4705956_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NC_019729.1\|WP_015177566.1\|4701879_4702227_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_019729.1\|WP_041622634.1\|4692529_4693285_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227049
NC_019729.1\|WP_015177563.1\|4699502_4700507_-\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|259910
NC_019729.1\|WP_015177573.1\|4713879_4714194_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177564.1\|4700876_4701566_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019729.1\|WP_015177560.1\|4696448_4696919_+\|DUF2808-domain-containing-protein	unknown	unknown	gnl\|CDD\|371328
NC_019729.1\|WP_015177565.1\|4701643_4701883_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177572.1\|4711988_4713794_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_019729.1\|WP_015177559.1\|4695740_4696220_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236733
NC_019729.1\|WP_015177558.1\|4693410_4695318_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NC_019729.1\|WP_150111682.1\|4698124_4699108_-\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378965
NC_019729.1\|WP_015177569.1\|4706128_4706365_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177556.1\|4691647_4692331_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	6.30344e-46
NC_019729.1\|WP_015177555.1\|4690924_4691518_+\|ATP-binding-protein	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	6.19718e-44
NC_019729.1\|WP_015177570.1\|4706443_4708513_-\|MASE1-domain-containing-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	1.02445e-88
NC_019729.1\|WP_015177554.1\|4690161_4690839_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.63813e-87
NC_019729.1\|WP_041622636.1\|4697092_4698037_-\|FTR1-family-iron-permease	gnl\|CDD\|223744	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism].	1.84645e-54
NC_019729.1\|WP_015177571.1\|4708659_4711632_-\|PAS-domain-S-box-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	1.00584e-82
NC_019729.1\|WP_015177567.1\|4702247_4703579_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.32295e-55
NC_019729.1\|WP_015177568.1\|4703967_4705956_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NC_019729.1\|WP_015177566.1\|4701879_4702227_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.5637e-29
NC_019729.1\|WP_041622634.1\|4692529_4693285_-\|membrane-protein	gnl\|CDD\|227049	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	6.73069e-91
NC_019729.1\|WP_015177563.1\|4699502_4700507_-\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|259910	cd11024, CuRO_1_2DMCO_NIR_like, The cupredoxin domain 1 of a two-domain laccase related to nitrite reductase. The two-domain laccase (small laccase) in this family differs significantly from all laccases. It resembles the two domain nitrite reductase in both sequence and structure. It consists of two cupredoxin domains and forms trimers and hence resembles the quaternary structure of nitrite reductases more than that of large laccases. There are three trinuclear copper clusters in the enzyme localized between domains 1 and 2 of each pair of neighbor chains. Three copper ions of type 1 lie close to one another near the surface of the central part of the trimer, and, effectively, a trimeric substrate binding site is formed in their vicinity. Laccase is a blue multi-copper enzyme that catalyzes the oxidation of a variety of organic substrates coupled to the reduction of molecular oxygen to water. It displays broad substrate specificity, catalyzing the oxidation of a wide variety of aromatic, notably phenolic, and inorganic substances. Laccase has been implicated in a wide spectrum of biological activities.	2.35986e-61
NC_019729.1\|WP_015177564.1\|4700876_4701566_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.50943e-82
NC_019729.1\|WP_015177560.1\|4696448_4696919_+\|DUF2808-domain-containing-protein	gnl\|CDD\|371328	pfam10989, DUF2808, Protein of unknown function (DUF2808). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.80734e-07
NC_019729.1\|WP_015177572.1\|4711988_4713794_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_019729.1\|WP_015177559.1\|4695740_4696220_+\|hypothetical-protein	gnl\|CDD\|236733	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA.	0.004817
NC_019729.1\|WP_015177558.1\|4693410_4695318_-\|HAMP-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	3.17225e-49
NC_019729.1\|WP_150111682.1\|4698124_4699108_-\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	4.89801e-05
NC_019729.1\|WP_015177569.1\|4706128_4706365_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	4.98435e-28

>NC_019729.1|WP_015177563.1|4699502_4700507_-|multicopper-oxidase-domain-containing-protein
MTDLSDRPAIKKAGRWSRRQLLQLGIAGAGVAGGAIALQNLTRKPTSVARIPPMPADALTVSNINPMQIARDFDYGTVTRENGRTVREFRLEANTSIVQLNSAVTFNTWNVNNRVPGPTLRATEGDRIRVIFSNKGGHSHSLHFHGIHPTEMDGVKPVRNGSVFIYEFDANPYGVHLYHCHIAPVTRHIGKGLYGMFIIDPPKPRPPADEIMLVMGGYDVNEDEKNELYAFNGLPNYYMNNPIPIYKNQLIRLYVLNLIEYEAAVTFHLHANFFDVYRTGMTLTPSERTDVITMGVAERHILEFTYGYAGKYMFHPHQDAIAEAGCMGVFEVIT
>NC_019729.1|WP_150111682.1|4698124_4699108_-|helix-hairpin-helix-domain-containing-protein
MLVALTGCVSPTASNTDSTSSPAATASPASTSGHSMNHGGKGSININTAILSELDKLEAKLGIPALSNKIQASRPYGKVEELVSKNVITQAQLDQIKDLVTIENVVLTGEPKDVDFMTKLGLMKGHLFVAQELLDQGKPDQAEPHIGHPVEEIYADVEDQLNERKIPEFKATLIKLQDLVKAGAKDPAQVKAEFDTSMQAVDGAIAALPEAQRKDPKFVLQVINGLLDTANSEYGAAVANGKIAAIIEYQDSRGFVMYAEMLYKDIAEQVAKTSPDIDKAIVANMTELKTTWPTAIAPPAPVKTTEEVTKLVKTIESDSQKVLKPAS
>NC_019729.1|WP_041622636.1|4697092_4698037_-|FTR1-family-iron-permease
MNFGEALPTFVITLREGVEAALVVGIVLACLKKSGQSYLSPWVFGGVGVGLIASALIGVLFGWIIQILSASNQPFAPIMESLLEAIFGLVAIAMLSWMLIWMTKQARFMKAEVEGAVSAALTKNSHAGWGVFSLVVIAVLREGFETVLFVVAKFQQGIIPALGALAGILSATALGVLLFKWGVKINIRLFFKYMGILLLFIVAGLVVSTLGIFDSAMNILSQTNRESAALCFYYERFTKIHSCILGPMVWNTSQLLPEEKFPGLLLSALFGYTDKLYVVQAIAYLMFLGTVGGIYFQSLAGRVFFPFKKTQVMK
>NC_019729.1|WP_015177560.1|4696448_4696919_+|DUF2808-domain-containing-protein
MKKLIYAAAFTLLLASNASATVAGGAIQNANVPHLTHSGAHPNKARFQGATHHFEVHVQGKALSALAIELPEDVKLRSGIEVKNPSGQKIESQVSVNNRKATVVFSQPISPDTTISIDMRGIQTPGYSRNWMYAISGKMVGINAEIPLGTVLIQTY
>NC_019729.1|WP_015177559.1|4695740_4696220_+|hypothetical-protein
MKTLKSNLIVLGSVGLLFLGACSKGEQASNPNSTPPSPPVASQPASSPPAAAPATATQGGQVVKSGAYYLEFVPEKEATGTHLDVYLQKGEKKEPVPDAKVTAQVQLANGKQQTLALKYDAEGKHYAVVFPGKEAGSYPVKVTADIKGEKVDGRFTFNQ
>NC_019729.1|WP_015177558.1|4693410_4695318_-|HAMP-domain-containing-protein
MRTKNHHQAVLHKQSRRKTSRDLELPSNWFQRLIRRTPIRWKISLGYALVLSIAVLGTTAGQLVGNLYTKKAWDKLNLEQDEAQLLSELKIAVLQTQSQQQKLVILIGNSASFNQEKDEYFAHNKRVNQLFSKLRILVEQNFNKDDPEIVKLNQCLQTYDAIQTAYSQQLDGLLQEIDPKRLSPEKVTASQQLLWEFTKSQSAIHFNQLSEDLTKLVKLAYQGQDRAEIGMEDAREVLKEVSIASLLLSLIGATIFAFYISRMISQPIEALTQVAEQVTKESNFSLQASVTTDDEVGELTISFNSLIESVKEHIEALKLSQQNLEKRVEERTEEISQKNHELQSAYNQLADALHNLQQTQAQLIQAEKMSSLGQMVAGIAHEINNPVSFIYSNLEHASNYAQDLLRLVELYQKQYPNPSGAIQAETEAIELDFLADDFSKVIHSMKNGADRIRQIVLSLRNFSRLDESQLKLANIHEGIDSTLVILNQRLEQRIAVIKEYGDLPLVKCYPALLNQVFMNIIENAIAALEEGKINSKNLSCGTQQPTIWIHTKIIDSEMVRIGIRDNGTGIPPELINKVFDPFFTTKDVGKGTGLGLTVCYQMIEKHKGNLEVFSELGEGAEFLITLPIKPSDSST
>NC_019729.1|WP_041622634.1|4692529_4693285_-|membrane-protein
MSKLPQITAFFWIMKICATTLGETAGDLLSMTLNVGYAVSSMILMGVFLTTLVSQLISKSYNPLLYWTVILSTSTAGTTMSDYMDRTLKLGYTTGSAILLTILLAILAFWRFSVGSLSVNNVKTPKTELLYWTAILFSNTLGTALGDFLADTSGLGFAGGALLISSLLALVLAAHYFTQISEVLLFWIAFVLTRPFGATLGDVLTKPHEKGGLDFGTGGSSIVLLSILGVCILFTTLKQRRLIAPEPSSNE
>NC_019729.1|WP_015177556.1|4691647_4692331_+|phosphatase-PAP2-family-protein
MLSKSYQFWLRHINPHITTLIVTIGVVGIASCLSIIFLLAWLFEEVLEKQAFGFDTAWIYWVHGYATPNLDAVMLTITQLADARVVVVIVALTLGILWWRNHRSEAKIFAIACLGAFILNNGMKLFFAKPRPHIFPSLISETSFSFPSGHALGGFVMYGFLAYLLSSRFPKYSKFIYTLAVITIAAIGLSRIYIGVHWPTDIIAGYGVGYIWLMLCITMLKLQTRQV
>NC_019729.1|WP_015177555.1|4690924_4691518_+|ATP-binding-protein
MFTKIRWRLLLSYLTVFTSILVIFAAGVRLLFARSLTQQLTDRLTALGQGAATNAEPEACAKKIDFKSEIDGDMYLLGNAGQLTRLFANLIENALHYTLAGGTIEVTANSVSSYLIVSVRDTGAGIAAEHIKLVFERFWRADESRSYWAGGSGLGLAIAKSIAQNHGGSITLTSQVGVGSCFTVRLPSIKVSEHSQD
>NC_019729.1|WP_015177554.1|4690161_4690839_+|response-regulator-transcription-factor
MKILLVEDDDRIAKPLAEDLRHQNHAVDIATDGIEAWDYIQSVNYDLVLLDLMLPKLDGIALCKRLRAAKSNTLILMLTARDTTSDKVLGLDAGADDYLIKPFELEELSARIRALSRRIPETKPLILSHGDLQLNPSSCTVTYGNQPLSLTPKEYMILECFLRNPTQVLTRAAILDKLWDFDRSSGEGTVKTHVTNLRSKLKAAGSSENFIETVYGIGYRLSGTN
>NC_019729.1|WP_015177564.1|4700876_4701566_+|response-regulator-transcription-factor
MRVLLVEDEPDLGKAIDRTLKQEKYIVDWALDGSEAWEYLDSHWMQYNLAIFDWLLPGLSGLELLRRLRAKHSALPVLMLTAKDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRRSPQIQPQQLQVGNLVLDCGNRTACHLDRNGKNQIISLTNKEFQLLEYFMKHPNQIITTDKIRNQLWEASADTFSNVVAAQVRLLRRKLESVGGTNLIETVHGVGYRMRN
>NC_019729.1|WP_015177565.1|4701643_4701883_+|hypothetical-protein
MTAMKDLIQQELEKLDIEQLKQVFEFIAFLKFRAKLVTIPAIDETNLAALYSEFAEEDRQLAELGMSEYAELLKHEDLQ
>NC_019729.1|WP_015177566.1|4701879_4702227_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MTVRRGEIWIAALDPTQGSEQAGVRPIIIFQNDTIARYTTTVISIPLTTNLRRASLPSSVFIPSGEGGLTQDSVALCHQMRVLDKTRLRNKIGEVNSDILVQLENNVLFTLGYLP
>NC_019729.1|WP_015177567.1|4702247_4703579_+|two-component-sensor-histidine-kinase
MNQNKLFNQTRWQLAISYAAVMGLILSLLGFGVYKAIAHAHWVAIDRELESVAGTLHDSLELKLQQPGRLEPIVNELLPNLCLIGVKGIKKQLPSRHILSAINQGYYYIRLFDDSGKLIATAGAYPEELPAEFNSQYWQTITDTKGNVYHQISVALHTKTQQDWGYFQVGRSLQDFNNYLNTVKWILKLGLPTALILIGFSSWLLAGLAMKPIYSSYRQIQQFTADAAHELRTPLAASQATVESALLTPQLDEKEAREILRTIDRQNRRLTQLVADLLLLARMDNQAIRDRPQLCCLNDLVSDLVEELAAMAIASKVALTSSVRVQQQLNVVGNSDQLYRLVANLIVNAIQYTPAGGKVTVILDSSHQEAIVQVQDTGIGIAVADLERIFDRFYRVNSDRSRNTGGSGLGLAIAQTIARAHRGSLSARSELGSGSTFLLQLPL
>NC_019729.1|WP_015177568.1|4703967_4705956_+|molecular-chaperone-HtpG
MTVLEQGTISIHTENIFPIIKKSLYTDHEVFLRELISNGVDAIAKLKMVSRSGEYSGEVGEPQINIAIDKENKTLSISDNGIGMTADEVKKYINQVAFSSAEEFIQKYQGSGDDAIIGHFGLGFYSSFMVAKKVEIDTLSYQEGSQAVHWSCDGSPAFELSDSSRTERGTTITLTLQDEEQEYLEPSRIKQLIKTYCDFMPVPIKFEGEELNKHKAIWRESASNLQKEDYLELYRYLYPFQDEPLLWVHLNTDYPFIVNGILYFPKLRPDVDVTQGNIKLFCNQVFVSDHCEEIIPKFLMPLRGVIDSTDIPLNVSRSSLQSNRTVRRIADYIAKKVGDRLKELYRDDRDEYIRCWQDIGTFVKFGTLNDDKFKKQVEDILIYRSTYEPAADKPETATPEVQVQTEEGDLWQDVTPKSEKSTSTQPYTTLKEYLERNQKRHENRVFYCTDPASQATYVAMHKSQGLEVLFMDSFIDTHFISFLEREYSDVKFSRVDSDIDETLIDKEKEAEIVDPATNKTRSEQVKEMFQKALNKPKVNIRTEALKSDSAEATPPAIVLLPEALRRMRDMTALLQQQAAEFPEEHVLLVNTSHPLIQNLASLSQGAIIQGGGESPSAELASMICHHVYDLALMAQKGFDAEGMKDFVERSNQVLTKLTERAM
>NC_019729.1|WP_015177569.1|4706128_4706365_+|50S-ribosomal-protein-L28
MSRKCQLTGKKANNGFAVSHSHHRTHKLQDANLQWKRVWWPQEKRWVRLHLSTKAIKTLQNKGLEIMAKEAGINLYKL
>NC_019729.1|WP_015177570.1|4706443_4708513_-|MASE1-domain-containing-protein
MSPHNNRFLRSPQFSSNWQYLAKVAAIAFAYALGAKIAVSIPGVNKLATCVWPPAGIAQAAILLFGRRVWPGIALGVFLYETINLKVSLTLAAISAFCACLQALCAFTLLQKLKFRLSLDRLIDVVYLIFGGAVVATQINCTLGTLRLCVTALVDWSEYWQIRWNWYLGDTLGVLIFTPLLLILYNHKPAPSTSQIPGSKNIVNRISAGICLLLLVTVSWLVYNSKSESNLSGYPLEYLPFPLVIWATIQFGQGGAVVSSFIVSCIAIWGGSQGGGPFIAKAENINQAILFLQAFMSVIVITSLLLAATVAERASAEDSLRQSEIKYRELVENANSIILKLDREGNITFFNEFAQKFFGYDEKEIIGKNAVGTIIPEIDTKGNDLGAKLRDILQNPEQYTRNENESILRSGELVWVSWANKPLFDAAGKFAGMLGIGTDITERKRAEMALHKLNEELEFRVKERTNALNDTLSALRVQQEQSERLLLNILPEEIANRLKRGDSTIADTFAEVTVLFADIVGFTQLSSRVSPTQLVALLNDIFSTFDNLAERHGLEKIKTIGDAYMVVGGLPIPRPDHAEAIAEMALDMQEAITEFSNLHNQDFSIRIGINTGPVVAGVIGIKKFIYDLWGDTVNTASRMESHGKPGSIQVTETTYQQLREKYFFENRGAIEVKGKGEMTTYLLKCRKLL
>NC_019729.1|WP_015177571.1|4708659_4711632_-|PAS-domain-S-box-protein
MNLNLNQFLRFPQSRIGRYLAQVAVVGVAYAVGARLAISIQGVSPFAASVWPPAGIAQAGLLLYGSKVWPAIVLGTFLLNLVNPSEQIFEVWLGGNAGAILQAVFAVKALGWLGFRPSLARLKDVVNLILFGGLISTQISCTIGAFSIYLAGKVDWAGYWSLRWNWCLGDTMGILIFTPLILIFIRPKVTAERLKIQTDSKKKYLIVRGVWLILLIGASWLVFESKHEASIARYPLEYWPFPLIIWAALELGQRATVLASFVVSIIAILGSSHGGGPFTAKADNINQAILFLQAFLAVVTITSLLLAATVAERTAAECSLRQSEIKYRELVENANSIILKLNADGYITFFNEFAEKFFGYKEEEILGKNALGTIIPPTDIDGNNLELVYGQILQNPDRFTSYENENIRRSGDRVWVSWANKPLVDAAGKLLGILCIGTDITDRRKAEIALQKLNEKLEIRVEERTNALKQSELQLQKQKSALIDLAKNKALNQGDLTKALQEITETASRTLEVARSSVWLYDRTKSKIECLDLFDRTLNQHSHGLELAAADYPVYFQALREERAIAAFDAQKDFRTREFAESYLIPFGITSMLDTPIQIGGETAGVICLEHVGTPRSWTIEEQSFAVSLADSVTFAVEARQRQRAEEALRQAEEKYRSIFENAIVGIFQTTPDGEYLSANPALLRIYGYSSGEEFVGTLTDISQQLYVDPDRRAEVVRLIEEQGKVSDFESQIYRRDGSIIWISENTYTVRDSYGNLLYYEGTVQDITTRKQAEAALRLEQEKSDRLLLNVLPQPIADRLKQDQSIIADTFAEVTVLFADIVGFTQISSQISPPELVSLLNDIFSTFDRLAEKHGLEKIKTIGDAYMVVGGLPMPRSDHAEAIAQMALDMQQAITEFSDTHDRDFSIRIGINTGPVVAGVIGIKKFIYDLWGDTVNTASRMESHGLPGCIQVTSAIYDILHDKYVFESRGAIEVKGKGEMNTYFLTGIKL
>NC_019729.1|WP_015177572.1|4711988_4713794_-|proline--tRNA-ligase
MRLSQMLFVTLREDPAEAEIPSHKLLLRAGYIRRIGSGIYAYLPLMWRVLKKVSQIVREEMDATGAQECLLPQLQPADLWRESGRWDTYTQAEGIMFAMTDRQQRELGLGPTHEEVITTIAKDMIRSYRQLPLHLYQIQTKFRDEIRPRFGLMRGREFIMKDGYSFHTNEESLKKTYQDMAQAYSNMLRRSGLQFRAVDADSGAIGGSGSQEFMVLAEAGEDEVLYTEDGQYAANVEKAVSMPADVEPSPFATFEKRETPGTETIDKLCKFLKCSPTQVVKNVLYQAVYDNGMTVLVLVSIRGDQDVNQVKLLNELTKLAGNYQAKTVLFLTVPDAEAQRKWAAKSLPLGYMAPDVADDYIAGSKEVNSKFLRLVDRTAVDLTNFVTGSNESGYHVVGANWDREFPLPALVVGVRTAKKGDRAVHNPEQTLQSARGIEVGHIFQLGTKYSQAMGATYTSEQGEEMPFVMGCYGVGVSRLAQSAVEQSYDKDGIIWPVAIAPYHAIISIPNISDAQQVEVAEKLYAELNQSGIETLLDDRDERAGVKFKDADLIGIPYRIVPGRSLKAGKVEVVERATHKSQEILIDEVNSTLKQWIEAAIN
>NC_019729.1|WP_015177573.1|4713879_4714194_+|hypothetical-protein
MNKIWQNYEKGMAVFDNCHSPTVQSQWLALKDEIGEFVREPNSSEIWDIVHAAGRLLYKLIGIPLYLLAYPTVRKHSQRFEEYGCIRSIRNCEGKCCKQLTVDS

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Crispr_ID: NC_019729_42

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_42

4759614-4759719

Orphan

Consensus_repeat	Method
CTTCGATCTCGTCATCATCATCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_42

>merge|NC_019729|42|4759614-4759719|CRISPRCasFinder
CTTCGATCTCGTCATCATCATCGCCGCCTTTAATTGTGTCGTTGCCCAAGCCTCCTTTTATTTTGTTTTTGCCTTTACCGACTTCGATCTCGTCATCATCATCGCC

>NC_019729|42|41|4759614-4759719|CRISPRCasFinder
CTTCGATCTCGTCATCATCATCGCC	GCCTTTAATTGTGTCGTTGCCCAAGCCTCCTTTTATTTTGTTTTTGCCTTTACCGA
CTTCGATCTCGTCATCATCATCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177615.1\|4768642_4769068_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|226720
NC_019729.1\|WP_015177610.1\|4763626_4765327_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_019729.1\|WP_015177618.1\|4771137_4771575_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_019729.1\|WP_015177599.1\|4743392_4744757_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NC_019729.1\|WP_015177603.1\|4750197_4751562_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019729.1\|WP_015177601.1\|4747086_4747329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226420
NC_019729.1\|WP_015177602.1\|4747916_4749530_+\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NC_019729.1\|WP_015177598.1\|4741828_4743184_+\|hemolysin-type-calcium-binding-region	unknown	unknown	gnl\|CDD\|380205
NC_019729.1\|WP_041623304.1\|4751929_4753123_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_019729.1\|WP_015177605.1\|4753240_4753900_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019729.1\|WP_015177609.1\|4763367_4763622_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_006634284.1\|4747318_4747600_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_019729.1\|WP_150111564.1\|4754526_4755593_-\|ISKra4-like-element-ISOni2-family-transposase	unknown	unknown	gnl\|CDD\|273844
NC_019729.1\|WP_041622638.1\|4767561_4768029_+\|regulatory-protein-RecX	unknown	unknown	gnl\|CDD\|234646
NC_019729.1\|WP_015177614.1\|4768130_4768646_-\|DUF4385-domain-containing-protein	unknown	unknown	gnl\|CDD\|373016
NC_019729.1\|WP_015177611.1\|4765348_4765501_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_051041530.1\|4754071_4754542_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015177612.1\|4767060_4767471_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372980
NC_019729.1\|WP_015177616.1\|4769399_4769657_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177617.1\|4770227_4770719_+\|DUF4168-domain-containing-protein	unknown	unknown	gnl\|CDD\|379360

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177598.1\|4741828_4743184_+\|hemolysin-type-calcium-binding-region	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	7.87163e-15
NC_019729.1\|WP_015177618.1\|4771137_4771575_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	9.11853e-47
NC_019729.1\|WP_015177599.1\|4743392_4744757_-\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.51218e-107
NC_019729.1\|WP_015177603.1\|4750197_4751562_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.00666e-13
NC_019729.1\|WP_015177601.1\|4747086_4747329_+\|hypothetical-protein	gnl\|CDD\|226420	COG3905, COG3905, Predicted transcriptional regulator [Transcription].	7.40204e-12
NC_019729.1\|WP_015177602.1\|4747916_4749530_+\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	2.98641e-62
NC_019729.1\|WP_015177610.1\|4763626_4765327_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	8.72818e-23
NC_019729.1\|WP_041623304.1\|4751929_4753123_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.20566e-62
NC_019729.1\|WP_015177605.1\|4753240_4753900_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.7212e-80
NC_019729.1\|WP_015177615.1\|4768642_4769068_-\|DoxX-family-protein	gnl\|CDD\|226720	COG4270, COG4270, Predicted membrane protein [Function unknown].	7.37735e-43
NC_019729.1\|WP_006634284.1\|4747318_4747600_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.44241e-15
NC_019729.1\|WP_150111564.1\|4754526_4755593_-\|ISKra4-like-element-ISOni2-family-transposase	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	0.00353166
NC_019729.1\|WP_041622638.1\|4767561_4768029_+\|regulatory-protein-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	1.57179e-21
NC_019729.1\|WP_015177614.1\|4768130_4768646_-\|DUF4385-domain-containing-protein	gnl\|CDD\|373016	pfam14328, DUF4385, Domain of unknown function (DUF4385). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 149 and 163 amino acids in length.	7.63094e-87
NC_019729.1\|WP_015177617.1\|4770227_4770719_+\|DUF4168-domain-containing-protein	gnl\|CDD\|379360	pfam13767, DUF4168, Domain of unknown function (DUF4168).	1.24613e-22
NC_019729.1\|WP_051041530.1\|4754071_4754542_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.3823e-25
NC_019729.1\|WP_015177612.1\|4767060_4767471_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|372980	pfam14250, AbrB-like, AbrB-like transcriptional regulator. This family of DNA-binding proteins is likely to act as a transcriptional regulator. This family does not include E.coli AbrB, which belongs to pfam05145.	2.36791e-37

>NC_019729.1|WP_150111564.1|4754526_4755593_-|ISKra4-like-element-ISOni2-family-transposase
MTPSDQEQLKVYLKAAAEILYRNTAPSELESFDSIEKSLRQKMLEEVGPELGNFFFPAVSGIQTGKPRKIKSIVGSLEITDNQAKYFGLKAYSQFSPMMEKCCLLISANESYQMAEKDLEIFTGIKVSHSTLQRLVKRQEFELPTSKQGVQEITLDGGKVRLRNDTKGEGCYWKDYKAICLDNVYSGASFQNNQNLIDWTNSQKLRHPMYCLGDGHAGIWKIFQEIGDTEQRQEILDWYHLKENLYKVGGSLKRLKLAENMLWQGKIDEVINLFKEMKKQAFKTFCNYLETHRCRIVNYQYYKEESISSIGSGTVESIIKRIGFRVKISGAQWKIESVPSILSLRCAYLNGQLSI
>NC_019729.1|WP_051041530.1|4754071_4754542_+|Uma2-family-endonuclease
MLRKWTVKKYQMLGEMGFFHPEERGELILGNIIKMSAKGTAHTSATRRRATLLRELLENQAAVYTQDPIALDDNSEPEPDIAVVRIDPFDYATHHPTPSEVYLIIEVADSSLTFDREIKAKAYGRSGIADYWVLNVGDRQLHVGCISLWQIHQIES
>NC_019729.1|WP_015177605.1|4753240_4753900_+|response-regulator-transcription-factor
MIRLLLVDDQQLICQGLKAMLSLESDLEVIGIAHNGKAAIEQVEALQPDVVLMDLKMPVMDGREATRLICQSFPNTSVLVLTTFDDDGYIVDAMRAGAKGYLLKDMPSEELAQAIRLVQSGYTQLAPGLMDKLITGFCAAPTTPTPTTQLSKLPALAQLTPREQEVLRLIGKGLANRDIAQQLFISEGTVKTHVTHLLNRLNLRNRSQLAIYAHSAIET
>NC_019729.1|WP_041623304.1|4751929_4753123_+|two-component-sensor-histidine-kinase
MASLLKTQPQPFRFLLYTEWIMLGSCGVMAAIEAWQRQSLPVQHILILISLGLMGWILPAGKTSFRYLYTAIEMGLIFYGTTLGYLHILPTLYLIVLIRSCFLFASPGRWIVAGLSLVMYMFHQVQYLQRVIPLMLPNVEQQQIWMHQTAELLMFGLGLFFVSQLVSTLLAERRTQEQLSQAHAQLREYALQIEDLAAVQERNRIAREIHDSLGHALTSLNIQLQTAMKLWQHDPIEAQPFLEQAQRLGKVAMKEVRQSVNALRADAEAEEPLEQGIASLMEDFRQITGVTVTSSICVEVVLPPQVVKTLYRIVQEALTNICKYAQATEVRLQLQTTCDRVLLTLEDNGRGFQLESGTGGFGLRGMQERIASLNGEFHLETSPGAGCRIDVSLPLSR
>NC_019729.1|WP_015177603.1|4750197_4751562_-|calcium-binding-protein
MAVINGTNGNDNLNGTAASDTLRGLDGNDNLFGGFFGDDLLDGGNGNDTATYLGFGNNINASLETNKATFFGGSGTFIGIENLIGGNNQDVLTGNGFDNLIDGSFSNDDISGRAGNDRLIGGAGFDTLKGELGNDNLRGGNDTDLLDGGDGADFLAGDKGNDTMIGGSGDDAFEWVDGDGSDLIQGDGGRDNLLFNGSIAQGDNIDLTQSGLNIVLQRTNLVPVTLTTTGIESFNAINGGGGDDVLNVRNLGATSGVEFIQFTGGEGNDRLNTTNVSANINASGGNGNDILVSSNGNDELFGNGGSDVLSGGDGSDRITGAERGGGKGEIDVLIGGAGADTFVLGEIGQINYDDGNGLLDNAADIFNGNIGIDGLSDFARILDFRIGEDVIQLGGSSNSYVLRTVPNSLQGGSAAQDVGIFKNNGFAQPLELIGLVQDAPSGLNINNSAQFKFS
>NC_019729.1|WP_015177602.1|4747916_4749530_+|family-10-glycosylhydrolase
MRKTKTFFLSSLFLIGLTISFLLTPGWFSNFPSRASATMPPQTQTAEFRAFWVDAFNPGFKTPQEVTKLIADAQRANANAIVAQVRRRGDAFYTSAIEPRTLDPNVPPGFDPLQDLIDKAHAAGIEVYAWMVTLPVVSGTKLPAGHVWQQHGPNAPGINNWAMLTYGGESPGFLDPGHPDAVDYTVSVYLDLLKRYDVDGVQLDYVRYGGPTWGYNPTAIARFNQQTGRSGKPAPSDPAWMQWRRDQVTNLVRKLYVESLAIKPRVKITAATIAWGDGPKNEAGWYQTQPYKEVLQDWRAWLEEGILDMAMPMTYQREYKPSQKLAYDHWIEYAKDHQYNRQIAIGPGNYLNYIEDTLGQIRRAEQPSAKGNHVAGTVLYSYASSNVYTNVELRSGGSGDLPRQPWKYVPQSNDLFYTALSVPSQYVDAATGKTYETQPVWATAAAVPDMPWKSRPTTGAIAGNLQRCAQTCDGASLTLQSIDAAGKVRQLRADGKGWFGAIELSPGSYQLKVDGSQIQQTVNVAAGEVTKVNFASL
>NC_019729.1|WP_006634284.1|4747318_4747600_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIKWLRQALRNLEQAHAYIVKDDPEAARQLILRIQSAVGQLAEFPFMGRVGRVEATRELVISNTSYLIIYRVKEENVEILRILHSSRKYPEN
>NC_019729.1|WP_015177601.1|4747086_4747329_+|hypothetical-protein
MSQESFTFLLDSEKKEALKAIANVTDRDLTYVLNEAIASYLDIYQWLLDEINKGVAEAEAGDFASDDEVKAVFVKLTNEN
>NC_019729.1|WP_015177599.1|4743392_4744757_-|MFS-transporter
MEKKHNAGLWVSVLYFAQGLPYTVVNLMSVIFLKGMGTSNEIIGLTSLLSFPWVLKGLWGPVVDLYSTKRKWILTTEIICAFLFAFLAFGVLTPAPIIISLVIFTAIAFVSATHDIAIDGFYLNTLNKDQQALFVGVRNTAYRGAVIAGSGVLVFLAGKLAEQHLVTGNTGDIKTYQNIPLSLFGSDFSVSALNYGWATAFGICAIMFVLIYLFQRWYLPYPRNYDLESDTPQQTTSFIEAFKTYFQQDKIGWIVAYVLIFRLGDALTFKMAPPFLMDKVEKGGLAVSTSDMGLLSGTLGVMFLLIGGLLGGYLIAKQGLKKWMWPTAILQNSTNVLYWLLAINQPGIEWAYAVNSIEQFTYGLGVAAYTVFLMRTVRPEYEASHYAITTAFMAAGVLIPGVFSGYLQANLGYQNYFLMSALAVIPGMLTIFFLPLEDEKKLASMPRPGLDDFD
>NC_019729.1|WP_015177598.1|4741828_4743184_+|hemolysin-type-calcium-binding-region
MPSSPAAYETIAKQLAYIDDKPQSQTLVQTGLTAAGYKIDRTFDDPGTGFHAIGLISTTPDKPPVLVFRGTDSPTDDLANADKRGVGFNQFEANKQALGNWLTQISQDTAKNPRRLPPDLLGHSLGGAITQLAATEFTSAIGDVVTFNSPGVAQSTVNTFKQKAGAGKNVTHYIVSGDFVSLGGEAFLPGKVVLQTFTDPIINPLLVLDKHTQSGLLTAPPPGLTQAEISVDQLNRPDFTFTDSDYLELLAGLDFTLPALATSLESRSSVEQLRTAPGSSSLGNLVAMKTALDLSQINNLVGDNANNTASGFAGDDIITGNGGNDTLSGNKGNDIISGGAGNDQLLGGKGDDNLNGGDGDDTLIGAAGSDLLIGGAGRDIFVLGVGGTDTLVDFQKGQDLIGLSGGLTFNQVRVTEGDFSTTIEIARNGQVLASIPGILSSPLTATDFIAI
>NC_019729.1|WP_015177609.1|4763367_4763622_+|hypothetical-protein
MLKIARLEKIRLSPSHRAIKTNKLLLKYNFYILKVFEQIYITPAIARSGEAHSETLIGTVKIILPIAIASRKNAGKFRIKAGGR
>NC_019729.1|WP_015177610.1|4763626_4765327_+|CHAT-domain-containing-protein
MSQEFQLSVTPVGDDEYLVRTERVAPGVPLAEQQVRWPIDEWLALSAQLMNDPLVGLLQGKAVHGSSLAGRGLSRSGNNCAPNLVALGQQLYSGLFQGNLRDSWTCAQGIAQHRREVLQLRLGLKGRRLPRLPWEVLHAGDRPLATGTDVVFSRYQPGTSLFKQTRILPSSGPLKILMAIASPSDRDSLQLKREVLHLQQELQNRTGNPLKNSPHSPEIQLTILEQPDREQLTQALEQGHYQVLHYAGHSNLGSRGGELYLVSSRTGLTETLSGDDLAGLLVNNGIQMAVFNSCRGAYGDPSDLADDSAERNLTEALVKRGIPAVLAMAESIPDDVALTLTRLFYRNLNQGYPVDLSLSRARAGLISAYGSHQLYWALPILYQHPDFDGYLTGGPAHSATSGSMVHIIGSGTQPALGGTEWKAPSSVSAIAPYPPIPANRSHESDSSDGEVWEYFPDQLKDRRDWVHQNDRPDAANSPNSPTASPSSIPHSECSAIQATRAAAATQKPLKKPGLKKSVALILCLLPVALSAGFFGWRYSHQRGTKPEELLPAVRTPLSQNYLQQRH
>NC_019729.1|WP_015177611.1|4765348_4765501_+|hypothetical-protein
MLNLDPLGLAPHWVRFLLVIRDRLPLAKRSKVYCSIESRTYLDRAGFYPK
>NC_019729.1|WP_015177612.1|4767060_4767471_+|AbrB-family-transcriptional-regulator
MAETATAPLTGKGLLQKIKGSDLPRRELAKLCGYFTVSKSGETRINLAEFYDAVLAAKGIELEKSKADGRGREASYRASVHKNGSIVIGANYTQEMGLKPGDEFEIKLGYKHIRLIQIDVDRPDVELDDEEEDTEE
>NC_019729.1|WP_041622638.1|4767561_4768029_+|regulatory-protein-RecX
MSCLDYFYFLLSRKDYSASELRKKGQEKGFGNEEILEAIAQIQDRGYQSDTRLVANSIASAAGKYGKSAIKRKCLQKGITNDLFEQVWEEETAENQDSEAEKLAELKAKVMRKYKIDTWGKADPKTKGKVLNYLQYRGFNAFEIWRQWQTEEDDE
>NC_019729.1|WP_015177614.1|4768130_4768646_-|DUF4385-domain-containing-protein
MKQFDYHADFKNIDFRQHPELYRVGKGEQGVLLVEPYKGEILPFWRFKTPEIARESSSKIYSLFLEYLDREDFVGADMARKFLQMGYTRSRRYANHKSGRKYQQNPQKLKSVAEQSAARKDILPLQADPVKAESAAIFQEKWMLAKINEKYLELLARHRQMYESYLVNAED
>NC_019729.1|WP_015177615.1|4768642_4769068_-|DoxX-family-protein
MKSQKEIWRVILAVAISIVGVLHFAVPAPFIRIVPPQLPYPEALVYISGFFEILGGIGLLVPPVSRAAAWGLIALFIAVFPANINQAVNNIPIEGIPHNQLLYWFRLPFQAVLIAWAWVYTQPDEGKPRASIVPDRTENAR
>NC_019729.1|WP_015177616.1|4769399_4769657_+|hypothetical-protein
MIFVPALASSAAKPVGDFLDRQMHHRLTLNKSSPQLMSAIAAKFDNQASRTQAPGFIRPEIKNLYPIKEPQNLSRASQSILDFRF
>NC_019729.1|WP_015177617.1|4770227_4770719_+|DUF4168-domain-containing-protein
MNTSLNTSKFGINRMLRQSLLLGIISAAALASGWAPGLYRQSPNLVFGAAAQAQEISSEEITSYARAVLAIEPKRLGASQEIKGIAGGSVPRVVCNETSQINRLSGNVRGIVVNYCDQAKKIIETNGLTVSRFNQITLLQQANPAIKQQIQAELLRLQQAGNK
>NC_019729.1|WP_015177618.1|4771137_4771575_+|urease-accessory-protein-UreE
MLTFTKHLPANPDAVVSFTLPMTADDRTRSRHRFETETGERLHLSLPRGTVLRDRDLLQSEDGSCLVLVSAKPELVLTARASSPLLLMRAAYHLGNRHVALEIADNYLRLSPDSVLQGMLEKMGLEVTEEIVPFQPETGAYGHSH

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Crispr_ID: NC_019729_43

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_43

4853294-4853410

TypeI-A,TypeV-U4?

Consensus_repeat	Method
CGCCCCGACAATTCCCAAAATGATTAGTCCCAG	CRISPRCasFinder

1 spacers

c2c9_V-U4,csa3

The CRISPR arrays of NC_019729_43

>merge|NC_019729|43|4853294-4853410|CRISPRCasFinder
CGCCCCGACAATTCCCAAAATGATTAGTCCCAGGGGCGGGTTTATTTAGAGGGTTTGTATTTGTTAGATATTGTTGGTAAAACCCGCCCCGACAATTCCCAAAATGATTAGTCCCAG

>NC_019729|43|42|4853294-4853410|CRISPRCasFinder
CGCCCCGACAATTCCCAAAATGATTAGTCCCAG	GGGCGGGTTTATTTAGAGGGTTTGTATTTGTTAGATATTGTTGGTAAAACC
CGCCCCGACAATTCCCAAAATGATTAGTCCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177671.1\|4847995_4848196_-\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|225328
NC_019729.1\|WP_041622580.1\|4849892_4851020_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NC_019729.1\|WP_041623315.1\|4847585_4847993_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_019729.1\|WP_015177669.1\|4847269_4847437_-\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NC_019729.1\|WP_015177672.1\|4851796_4852012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|117819
NC_019729.1\|WP_015177673.1\|4852011_4852158_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177679.1\|4861196_4862237_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227301
NC_019729.1\|WP_015177680.1\|4862295_4862904_+\|GspH/FimT-family-pseudopilin	unknown	unknown	gnl\|CDD\|227305
NC_019729.1\|WP_041622650.1\|4854971_4855196_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177677.1\|4855188_4860420_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177683.1\|4865338_4866157_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015177684.1\|4866463_4866700_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177674.1\|4852210_4852426_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177675.1\|4852415_4852823_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177681.1\|4863015_4863654_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015177678.1\|4860475_4861132_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NC_019729.1\|WP_190274240.1\|4854761_4854938_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622646.1\|4848343_4849180_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|184028
NC_019729.1\|WP_190274435.1\|4849269_4849893_+\|IS607-family-transposase	unknown	unknown	gnl\|CDD\|239738
NC_019729.1\|WP_015177682.1\|4864363_4865110_-\|cobalt-precorrin-6A-reductase	unknown	unknown	gnl\|CDD\|376826

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177671.1\|4847995_4848196_-\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	1.62856e-06
NC_019729.1\|WP_041623315.1\|4847585_4847993_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	4.80094e-18
NC_019729.1\|WP_015177669.1\|4847269_4847437_-\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	5.14952e-16
NC_019729.1\|WP_015177672.1\|4851796_4852012_+\|hypothetical-protein	gnl\|CDD\|117819	pfam09274, ParG, ParG. Members of this family of plasmid partition proteins adopt a ribbon-helix-helix fold, with a core of four alpha-helices. They are an essential component of the DNA partition complex of the multidrug resistance plasmid TP228.	0.000171137
NC_019729.1\|WP_041622580.1\|4849892_4851020_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.98069e-48
NC_019729.1\|WP_015177680.1\|4862295_4862904_+\|GspH/FimT-family-pseudopilin	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	1.06387e-12
NC_019729.1\|WP_015177679.1\|4861196_4862237_+\|hypothetical-protein	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	0.000269439
NC_019729.1\|WP_015177683.1\|4865338_4866157_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.63974e-21
NC_019729.1\|WP_015177682.1\|4864363_4865110_-\|cobalt-precorrin-6A-reductase	gnl\|CDD\|376826	pfam02571, CbiJ, Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyzes the reaction: precorrin-6Y + NADP(+) <=> precorrin-6X + NADPH. CbiJ and CobK both catalyze the reduction of macocycle in the colbalmin biosynthesis pathway.	3.07417e-104
NC_019729.1\|WP_015177681.1\|4863015_4863654_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.34663e-15
NC_019729.1\|WP_015177678.1\|4860475_4861132_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	4.19334e-07
NC_019729.1\|WP_041622646.1\|4848343_4849180_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|184028	PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	1.30494e-161
NC_019729.1\|WP_190274435.1\|4849269_4849893_+\|IS607-family-transposase	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	4.78522e-63

>NC_019729.1|WP_015177675.1|4852415_4852823_+|hypothetical-protein
MMTNSNYRLLPARDEYVQVSIYLNRVHLDGYTPDRAIAKLIEMGYAPTLQYQWNPQRNEFDLFALIHDRPIADSLMDKQACDALWAAFNESSLYVIGCEAAQNPNWLAARSFNDPRRHATPEEIEPLEANATAAA
>NC_019729.1|WP_015177674.1|4852210_4852426_+|hypothetical-protein
MLRDSDNPEKSWEDLEAELLPHRPFYAPGETEIEKDLYAKRRCAQQKMKAEKRPDIAGRSYYYCTETNNDD
>NC_019729.1|WP_015177673.1|4852011_4852158_+|hypothetical-protein
MTKNFKGGTRHAIDPWNQSQIENRKSLHPPNLSRASQSKIQNPKSKIE
>NC_019729.1|WP_015177672.1|4851796_4852012_+|hypothetical-protein
METLTASKTVSVKIYLPEETRAKFKASCAMRSLSMNEVLLEYIETWLQENEPVLEPKPQRVKTIAKTEETD
>NC_019729.1|WP_041622580.1|4849892_4851020_+|transposase
MLLSFKTELKPNNRQVTLFRQHCGVARHAYNFGNAIIQEALQLREADKTIKIPSAIDLHKRLVAEIKPANPWYYQSSKASPQQALAEVRTAWDRCFKKVSKQPRFKKKGKSKDSFYLEQGTKAKPGISNDGKRVKLPKIGWVRLHEPLPITATHNCVISRTADKWFIAIKYEIEQPPIPLNRPSIGVDIGIKELAVTSDGKVFANPKAYRKMSKKMKRLQRSVSRKVKGSKNRTKAVRKLAKLHSRISFIRKDAIHKLTNHLAKNHSVIKIENLNVKAFLKNHKLAGAIADCGMYEFKRQLEYKTEKFSSQLILVDRFFPSSQICSNCRNHRHKMPLKNRVYVCPDCGHTEDRDLNAAKNIERWFEGIHIPIRSD
>NC_019729.1|WP_190274435.1|4849269_4849893_+|IS607-family-transposase
MTLSIGEAAKELGISTKTLRRWTDAGKIKFERSPTGQRRFYLTDIKRITPRDLNQADDRITINYARVSSHDQKEDLKRQAAVLESFSAANGWQFETIQDLGSGLNYKKKGLTKLLKRIMSGEVGRLVVTHKDRLLRFGSELVFAMCEEFECEVVIVNKSPDELSFEQELVQDMIELIQVFSARLYGARSHKNKKLIDGIAKAVEDVK
>NC_019729.1|WP_041622646.1|4848343_4849180_-|3-deoxy-7-phosphoheptulonate-synthase
MYFSASPEHQTIVQLSETVSVGGQELLIIGGPCTVESSAQMETVARQLSATSVQALRGGVYKPRTSPYAFQGMGIEGLEILADVSRRYGLPVVTEVMSIAQIEPVVTYADMLQLGSRNMQNFELLKAIGQAGKPVLLKRGLSATIEEFVMAAEYILSHGNPHVVLCERGIRSFDNYTRNVLDLGAVAALKQLTHLPVIVDPSHAVGKRELVAPLAKAAVACGADGLIIECHPQPEKSVSDARQALSLPDMVDLVASLRPVAAAVGRCIPDTKSLVISH
>NC_019729.1|WP_015177671.1|4847995_4848196_-|heavy-metal-associated-domain-containing-protein
MALVLKVPSIVCSGCGDTITKAIQTVESDASVNVDITAKTVTVEAKASDESIKQAVVATGHTIQGE
>NC_019729.1|WP_041623315.1|4847585_4847993_+|helix-turn-helix-transcriptional-regulator
MSPNSAVNGAITQPHEQNDTPMCDRPHLVDSLRAGDIQTQVLNTAKAQRMAEFFSLLGDANRLRLLSVLAKQELCVCDLAAALSMSESAVSHQLRALRAMRLVSYRKVGRQVFYSLLDRHVFELYQAVAEHLDET
>NC_019729.1|WP_015177669.1|4847269_4847437_-|metallothionein
MTTATQTKCACPSCSCVVNVSEAIEKDGKQYCSSACADGHPNGQGCGHTGCECHK
>NC_019729.1|WP_190274240.1|4854761_4854938_+|hypothetical-protein
MTGLTTGSPTLHSRCRWLKPSLDKQCLLGRAGKYTVYDRDCCFWAIELTLALTADISI
>NC_019729.1|WP_041622650.1|4854971_4855196_+|hypothetical-protein
MQAKYFAEKYIIIGGDFGGGFVGFIFQPKYRFKFVQEADMQVAKNGNNVKMGLYCRAVTTSNTISEIIQEGVNV
>NC_019729.1|WP_015177677.1|4855188_4860420_+|hypothetical-protein
MFKSKLSKVIVSLLRRIAGVTRSGAKRLMRAMLQTLMAMGRRARLPVAGFVLPTVTMVLLVVILLTVAITLRSFDRANTARNVRVNQQVLAAATPALDRAKAKIQYALSPQGSGTLDTPSDLSVYQALDSDRFKFGDEDVLQIKFDLDNNGVPNPPPADITNINQSERINTAWRFPVDTDNNGKFDTYTLYGVFFRSPPRDLNTGEFNRSRKSLEARTPPMSVSQGSTNAICKAAAGTSASLVGSSDWYKAEGVLKKSFFVYTVNVPITNITGVATPDKYEIFKGSPSFSALEYQQDQKRIPLQNNAVVYEDDLEVSPGPALRLNGRIFTNSNFMVTTTGDGPVAFYLVSSRESCFYDLENSKIVVSGNVVNGWSGSSGNTGKDIAVHLFGKEATDPVTTKAIKGGADQSVAYKDGALGVMYNNKAYSDRIGLLVSEQEKNAPASDPQEVKNAIATQVQEETDPTAPSADRQEEIRRENLESYFRLRTRKVPFAEVPATGDALAGFVNPTTKVVTTSPFGGTGEELRPVDAWVMPLDTNTKLDTTSVRLKANSPEKVEEDNKESELGDRIVVGNNLPALRWRTDLDTPKFVGEGEEGRDTLTGVNWLDGGQRYREPQVKQFADVGGAERDGFWEKSAAQAPQTAVDGIGGLRVITGAGVYERTNSFLPPPKVFNPAANAVSEFYDNPATTAVEKFPVVWPDSMPMSPGPNSEVYNNNPAAGAVGWTDLTAAIWNDLPRIPAPVLTGTIDPNTRQYAKGDLRMRASAIYHYADNTSDQSAKLADTPLACVSSYYDPSYRYRKGTTTFDSSLNRPGLPLGSDTNGKSNNGIVYGPPATRPPGVTLTTALLTDASTLLPLAAGTPEQRLNYQASLVFPDGRFVNENLRKALQKADGERSLSEKAAIDSTLCSFKILANPTADISTTYLDHGTIREVAFLNPREVKAIDKDDPATAVDETYSLSSPLASSGGSGLMASTQSAKLTGQYDNPLAERQPLEIRVTQLDINKLRNKNSIAYKRVPVINTLNPEYMLPYSGLIYASRDDAAPDRSDRTPNSLGTGIDTTRSQLSSSTDSRLDPSRRPHGIMLINGSSLGRPTTVSTVTDVLKEKGLLLTSNLPVYIQGEFNKHTKREFTGAFSWTPSDFYGRPAANLDPNFACRLGDPRYPGKCAGSDNWRAATVLSDAITLLSEPVSGNLQDGFRYGVRNHGDFDLRNNAGTTIVGYDFDGDGIPPVDTTIDAANEADFGFDLNGNGTTNDTGVKETEVTAKAARRINGFGANNYVTNGLSSGAAFDILNQEKFGQSAGTSVTPTDTNYSTTTGAAPNSSYFNNFVTPVQRRTNFPEYVMEICRKLPVSACGPDDWVVGIDTGTLGEFDPSTPIDQREKASIVPATTPVGQLLSGTTAKPAIDPADRRYPRRVAFVRNISGTNKKNRLVFNGTIPVALGINGTAVAFYGGAPSSSVPVDGGTPITTASGTTPTAVANSLWYATTTTPATPTGGRDDGITNPLFYAKLPTVSGGFPNTVEQPQLRPTLQIQATNIASPPLTNAQNANDVTRWVQKARTTEFNLIVASNDVPSRAISSTLGDTNGGMQNLPRFMENWKGLTHSIAGSFIQFKRSSYATAPYLSVINDPAGGSLFKAKLFDYDTTYPSFPYKIETGVGTIGYFVPPTREWGFDVGLLSQPPDLFAQKFTLPASQKKPDEYFREVSRNDDWVKTLMCAEKLNDIDRKPSGIYAVNDGAKPAGCL
>NC_019729.1|WP_015177678.1|4860475_4861132_+|type-II-secretion-system-protein
MIKRQQPHSSLQKSQEAGYTIIESLVAMIVVSVLMIAIAPVMAFSVATRVQAKRIEMATQAAQTYIEALRSEALKQGANGFPATSTTAKLEENPAPGNINALYCIDKDGDQICTAGSNQDFVVQGYYFNNLPATNPAKTGYSLIVRVYRASSFASGVGALTTQKIQADQNRQVQQGVTSAGLGNLRAPLVEMRTEIGASDREGAYNSLCTRINDGPCQ
>NC_019729.1|WP_015177679.1|4861196_4862237_+|hypothetical-protein
MKTLLRLLLKTQYQRNRSGPAQTEKGMTLVELLVGAIMAFLIITPMLGFVVDMLNTDRREQVKSNTEQDLQAAVDFIAQDLSQAIYIYDQAGITAINPATQLPPAPTNTTGTPILVFWKRQLIKNAVPINSAVTAKTPSACPPNGSECNDTYVLSLVAYYQIRDTAPNSIWCQPSGGNCPTRIARYEIREPVRNPYTIDATKPYYDAADLSDAQKGSEAFNKDFDFNKPTVNVTMGANFPDPQVLVNYIHYSSTNVPIPTGTQCQTLLSVTPPPPPATFNANNLLITDSSNHSFYACVDTSKNIARVTLRGNSLRRIQTDADYEATKSAYFPTATVQVQGLGGLGK
>NC_019729.1|WP_015177680.1|4862295_4862904_+|GspH/FimT-family-pseudopilin
MKTPPILLKLLHNSAAKPSHNFNKTASRKDDGGFTLLEVLVIALIIGIFSSIAAPSWEAFINRQRVRTVNDRVLQSLRLAQSEAKRTKRDVTVTFSYNPNASPAIDPPTVTINNITQQLNAGGEIKPQTIALTVNTPAAPTTPPNSIVFDYQGNLTTGITPFYVTVAPSRGGTKQCVIVDTILGGMRTDEGTFDTSTGKGCK
>NC_019729.1|WP_015177681.1|4863015_4863654_+|Uma2-family-endonuclease
MQLELKQIIIQPGNQLLLKDITWPMFETLLTELGESRASRLSYSKGTLEIMVPLPEHEIGKENIGDLVKILLEELDREFWSLGSTTFKNQKMAQGVEPDTCFYIQNEAAVRGKSRIDLETDPPPDLAIEIDLTSRTQFNNYEALGVPELWRYNGRHLQISVLQDGKYIQGDRSLQFPNFPITELIPQYLEQSKTAGRNVAMKAFRSWVKAQI
>NC_019729.1|WP_015177682.1|4864363_4865110_-|cobalt-precorrin-6A-reductase
MKKRLLILGGTGDAAELAARASQIAEIEVVSSLAGRTQQPFTPKTGTVRIGGFGGAAGLAAFLVDRPIDLLIDATHPFAARISANAAVAAAECNVPYLMLVRPAWERVEGDRWIEVAGHSEAARALLGQSRRVFLTIGRQELAAFAGLDAIWFLMRAIDPPALNTPIPNGKLLLARGPFSLEEERQLLLEYQIDTIVSKNSGGGATYAKIVAARELGIPVVMVQRPPIADVEQVADVEGAIAWLVKQL
>NC_019729.1|WP_015177683.1|4865338_4866157_+|tetratricopeptide-repeat-protein
MIRSLFTFFTVLIVTGLVWLGNIAPVAAQVQPTDIADPQQELEELVQKAFEATNEGQFPAAETFWTQIIDKFPSQAAAWSNRGNSRVSQNKLQAAISDYERAIELAPDAPDPYLNRGTALEGLGRWSEAIADYNHVLELDSQDPAAYNNRGNAEAGLGQWEQAIADYSKAFELAPEYAFARANHALALYQNGQTKEAIRNMKNIVRRYPQFADMRAALSACLWEAGKRGEAESNWVAAIGLDSRYKDLDWVAHNRRWPPLAVSALDKFLHLK
>NC_019729.1|WP_015177684.1|4866463_4866700_-|hypothetical-protein
MLVSRSSDKQPTPEETRQLEKLQVQIERAVADGKISKQEMEDINRAIWADGKVTVEELEMYRMLVTDRIVSGDVEYEF

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Crispr_ID: NC_019729_44

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_44

4873443-4876460

Orphan

I-D,II-B

Consensus_repeat	Method
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	PILER-CR
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CRT

41 spacers

The CRISPR arrays of NC_019729_44

>merge|NC_019729|44|4873443-4876460|PILER-CR,CRISPRCasFinder,CRT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACGGAGCGTGACGCTGAGAACGAGAGCTAGCGTGAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTGGAACAGCCTTGGGCGCTTATGGCTCCTTTCTTTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACCTAAAATCGCGCAACATCAAATTAACAGCAGCATCAAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAGAGCTAATGCGGCTGCTGCAAGTGAATAATTTTTATGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTTGACCGGTTCGCTTTCGGATACCGCGAGCGCGGTTGGATTCGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAAGGGGGCGCTAGGCATTTTACATTGCTCCTCTCAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAACTCCCTTTCCTCGTCATCGTCGGGCGGTTCCGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACGCCTTTCTCGTGTGATTGTACATTTGCGAGAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACGAGAAATCTTTAAAAGCAATTTACCGAGCAAATCAGGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTCACGATGGCTGCCTTATTAGGCGGGACATTGTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTCTTTGGTGTCCGGGGAATCTACGCCTCTCACCCTGGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACCGATTAGCTACGAACAATTGGACGATGTAGATGAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTCACCTTTATTGTTCGCCTGGGATTCTGGTTGCTTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTTAAATATTAGTTGGTCATTCCGCAATTTATCGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTAAAACTCTCAGAGTAACCATGAACCCCATCGGGGCTAAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTTAAATATTAGTTGGTCATTCCGCAATTTATCAGACCAAATAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTACAAAAACGATCGCACATTTGACAAAAAGTTGTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACGTTCGGATTTATGGGAGCGAGAATAATCTCTCCCCTAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTCTGATTAGCTTTGTCAAAGTACCTTGCACCCTTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTACTTTGTCTCCTTGTGGCTTGACTCTCCTGTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTAGTTTTCTGCCCCAGGAATCTTGACTCTCCTGTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTATGTACGATATATCAAAGAATCGTGATTGTTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACACAAATCGATTGATTGACGGATGATTTGGACTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACCCAATACTACAAGTAACTCCTTGAATACCACCGCCACCACAAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACGCTAATCGTCGGTGTACTAGTCGGTCTGCTAGTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAAGCCAAGCTTTCCGGCTTCCAATCTTAAAGGAACGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACATCAGCAGCCGGAACAAATAGCGACCGATCTTATTAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAAGATGATTTTTAGAGAGTGAACAAATCCGATTAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTCTATATCTCGGTTTCCGTTATTTTCAACAAGTCGAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAGAAGAACTTAAAAAGGAAACGCCGCCGGAACCTGTTAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTACCGATCGCCCGCAATTCGATTTACCCCACGGGAAGCAGGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTCCACAACTTCGATTTGTTCGTCAGCGGGCGATCGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTTCTTGAGTGCGTTGAGCTTATTGCCGTACTGTCTGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACGAAAATTGTTAACCTTCCAGCTTCTCTCAATCCACGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTATCCTGTTTGGGGTTATTCCCCGCCCTTTCGGTTTTCAGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACAGGTGGATTCTCAGTTCTATCGAAGGGATTAGGGGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACCACACATCGACAAATACAATTCAACTTCCTTGCTAATCGCCGGAATCAACCTAAACCCCTATCAGGGATTGAAACTTGTCCGTAGTTTTGCCAGAGTTGCAAATACGTTTGCCGAAATCAACCTAAACCCCTATCAGGGATTGAAACCAGTAATTGCTGATGAAGTCTCATCAGAACAGGCTTCGCCGAAATCAACCTAAATCCCTATCAGGGATTGAAACCTGTATATCAGTGATTCCCGTAGCATTCCTAAATCGCCGAAATTAACCTAAATCCCTATCAGGGATTGAAACTCCTTGCGATTGACAATGAAGCCCGCCAGCGAGCGCCGGAATCAACGTAAATTCCTATCAGGGATTGAAAC

>NC_019729|44|8|4873443-4876389|PILER-CR
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GGAGCGTGACGCTGAGAACGAGAGCTAGCGTGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TGGAACAGCCTTGGGCGCTTATGGCTCCTTTCTTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CTAAAATCGCGCAACATCAAATTAACAGCAGCATCAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGAGCTAATGCGGCTGCTGCAAGTGAATAATTTTTAT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTGACCGGTTCGCTTTCGGATACCGCGAGCGCGGTTGGATTC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGGGGGCGCTAGGCATTTTACATTGCTCCTCTCA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AACTCCCTTTCCTCGTCATCGTCGGGCGGTTCC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GCCTTTCTCGTGTGATTGTACATTTGCGAGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GAGAAATCTTTAAAAGCAATTTACCGAGCAAATCAG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCACGATGGCTGCCTTATTAGGCGGGACATTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTTTGGTGTCCGGGGAATCTACGCCTCTCACCCTG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CGATTAGCTACGAACAATTGGACGATGTAGATGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTCACCTTTATTGTTCGCCTGGGATTCTGGTTGCTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTAAATATTAGTTGGTCATTCCGCAATTTATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TAAAACTCTCAGAGTAACCATGAACCCCATCGGGGCTAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTAAATATTAGTTGGTCATTCCGCAATTTATCAGACCAAATA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTACAAAAACGATCGCACATTTGACAAAAAGTTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GTTCGGATTTATGGGAGCGAGAATAATCTCTCCCCTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTGATTAGCTTTGTCAAAGTACCTTGCACCCTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTACTTTGTCTCCTTGTGGCTTGACTCTCCTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TAGTTTTCTGCCCCAGGAATCTTGACTCTCCTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTATGTACGATATATCAAAGAATCGTGATTGTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	ACAAATCGATTGATTGACGGATGATTTGGACT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CCAATACTACAAGTAACTCCTTGAATACCACCGCCACCACAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GCTAATCGTCGGTGTACTAGTCGGTCTGCTAGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGCCAAGCTTTCCGGCTTCCAATCTTAAAGGAAC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	ATCAGCAGCCGGAACAAATAGCGACCGATCTTATTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGATGATTTTTAGAGAGTGAACAAATCCGATTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTATATCTCGGTTTCCGTTATTTTCAACAAGTCGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGAAGAACTTAAAAAGGAAACGCCGCCGGAACCTGTTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TACCGATCGCCCGCAATTCGATTTACCCCACGGGAAGCAG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCCACAACTTCGATTTGTTCGTCAGCGGGCGATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTCTTGAGTGCGTTGAGCTTATTGCCGTACTGTCT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GAAAATTGTTAACCTTCCAGCTTCTCTCAATCCAC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTATCCTGTTTGGGGTTATTCCCCGCCCTTTCGGTTTTCA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGGTGGATTCTCAGTTCTATCGAAGGGATTAGGG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CACACATCGACAAATACAATTCAACTTCCTTGCTAATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTGTCCGTAGTTTTGCCAGAGTTGCAAATACGTTT
GCCGAAATCAACCTAAACCCCTATCAGGGATTGAAAC	CAGTAATTGCTGATGAAGTCTCATCAGAACAGGCTTC
GCCGAAATCAACCTAAATCCCTATCAGGGATTGAAAC	CTGTATATCAGTGATTCCCGTAGCATTCCTAAATC
GCCGAAATTAACCTAAATCCCTATCAGGGATTGAAAC

>NC_019729|44|43|4873443-4876460|CRISPRCasFinder
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GGAGCGTGACGCTGAGAACGAGAGCTAGCGTGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TGGAACAGCCTTGGGCGCTTATGGCTCCTTTCTTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CTAAAATCGCGCAACATCAAATTAACAGCAGCATCAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGAGCTAATGCGGCTGCTGCAAGTGAATAATTTTTAT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTGACCGGTTCGCTTTCGGATACCGCGAGCGCGGTTGGATTC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGGGGGCGCTAGGCATTTTACATTGCTCCTCTCA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AACTCCCTTTCCTCGTCATCGTCGGGCGGTTCC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GCCTTTCTCGTGTGATTGTACATTTGCGAGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GAGAAATCTTTAAAAGCAATTTACCGAGCAAATCAG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCACGATGGCTGCCTTATTAGGCGGGACATTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTTTGGTGTCCGGGGAATCTACGCCTCTCACCCTG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CGATTAGCTACGAACAATTGGACGATGTAGATGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTCACCTTTATTGTTCGCCTGGGATTCTGGTTGCTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTAAATATTAGTTGGTCATTCCGCAATTTATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TAAAACTCTCAGAGTAACCATGAACCCCATCGGGGCTAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTAAATATTAGTTGGTCATTCCGCAATTTATCAGACCAAATA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTACAAAAACGATCGCACATTTGACAAAAAGTTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GTTCGGATTTATGGGAGCGAGAATAATCTCTCCCCTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTGATTAGCTTTGTCAAAGTACCTTGCACCCTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTACTTTGTCTCCTTGTGGCTTGACTCTCCTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TAGTTTTCTGCCCCAGGAATCTTGACTCTCCTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTATGTACGATATATCAAAGAATCGTGATTGTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	ACAAATCGATTGATTGACGGATGATTTGGACT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CCAATACTACAAGTAACTCCTTGAATACCACCGCCACCACAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GCTAATCGTCGGTGTACTAGTCGGTCTGCTAGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGCCAAGCTTTCCGGCTTCCAATCTTAAAGGAAC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	ATCAGCAGCCGGAACAAATAGCGACCGATCTTATTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGATGATTTTTAGAGAGTGAACAAATCCGATTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTATATCTCGGTTTCCGTTATTTTCAACAAGTCGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGAAGAACTTAAAAAGGAAACGCCGCCGGAACCTGTTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TACCGATCGCCCGCAATTCGATTTACCCCACGGGAAGCAG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCCACAACTTCGATTTGTTCGTCAGCGGGCGATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTCTTGAGTGCGTTGAGCTTATTGCCGTACTGTCT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GAAAATTGTTAACCTTCCAGCTTCTCTCAATCCAC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTATCCTGTTTGGGGTTATTCCCCGCCCTTTCGGTTTTCA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGGTGGATTCTCAGTTCTATCGAAGGGATTAGGG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CACACATCGACAAATACAATTCAACTTCCTTGCTAATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTGTCCGTAGTTTTGCCAGAGTTGCAAATACGTTT
GCCGAAATCAACCTAAACCCCTATCAGGGATTGAAAC	CAGTAATTGCTGATGAAGTCTCATCAGAACAGGCTTC
GCCGAAATCAACCTAAATCCCTATCAGGGATTGAAAC	CTGTATATCAGTGATTCCCGTAGCATTCCTAAATC
GCCGAAATTAACCTAAATCCCTATCAGGGATTGAAAC	TCCTTGCGATTGACAATGAAGCCCGCCAGCGAGC
GCCGGAATCAACGTAAATTCCTATCAGGGATTGAAAC

>NC_019729|44|6|4873443-4876460|CRT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GGAGCGTGACGCTGAGAACGAGAGCTAGCGTGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TGGAACAGCCTTGGGCGCTTATGGCTCCTTTCTTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CTAAAATCGCGCAACATCAAATTAACAGCAGCATCAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGAGCTAATGCGGCTGCTGCAAGTGAATAATTTTTAT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTGACCGGTTCGCTTTCGGATACCGCGAGCGCGGTTGGATTC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGGGGGCGCTAGGCATTTTACATTGCTCCTCTCA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AACTCCCTTTCCTCGTCATCGTCGGGCGGTTCC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GCCTTTCTCGTGTGATTGTACATTTGCGAGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GAGAAATCTTTAAAAGCAATTTACCGAGCAAATCAG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCACGATGGCTGCCTTATTAGGCGGGACATTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTTTGGTGTCCGGGGAATCTACGCCTCTCACCCTG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CGATTAGCTACGAACAATTGGACGATGTAGATGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTCACCTTTATTGTTCGCCTGGGATTCTGGTTGCTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTAAATATTAGTTGGTCATTCCGCAATTTATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TAAAACTCTCAGAGTAACCATGAACCCCATCGGGGCTAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTAAATATTAGTTGGTCATTCCGCAATTTATCAGACCAAATA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTACAAAAACGATCGCACATTTGACAAAAAGTTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GTTCGGATTTATGGGAGCGAGAATAATCTCTCCCCTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTGATTAGCTTTGTCAAAGTACCTTGCACCCTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTACTTTGTCTCCTTGTGGCTTGACTCTCCTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TAGTTTTCTGCCCCAGGAATCTTGACTCTCCTGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTATGTACGATATATCAAAGAATCGTGATTGTT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	ACAAATCGATTGATTGACGGATGATTTGGACT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CCAATACTACAAGTAACTCCTTGAATACCACCGCCACCACAA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GCTAATCGTCGGTGTACTAGTCGGTCTGCTAGT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGCCAAGCTTTCCGGCTTCCAATCTTAAAGGAAC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	ATCAGCAGCCGGAACAAATAGCGACCGATCTTATTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AAGATGATTTTTAGAGAGTGAACAAATCCGATTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCTATATCTCGGTTTCCGTTATTTTCAACAAGTCGA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGAAGAACTTAAAAAGGAAACGCCGCCGGAACCTGTTA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TACCGATCGCCCGCAATTCGATTTACCCCACGGGAAGCAG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TCCACAACTTCGATTTGTTCGTCAGCGGGCGATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTTCTTGAGTGCGTTGAGCTTATTGCCGTACTGTCT
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	GAAAATTGTTAACCTTCCAGCTTCTCTCAATCCAC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTATCCTGTTTGGGGTTATTCCCCGCCCTTTCGGTTTTCA
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	AGGTGGATTCTCAGTTCTATCGAAGGGATTAGGG
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	CACACATCGACAAATACAATTCAACTTCCTTGCTAATC
GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC	TTGTCCGTAGTTTTGCCAGAGTTGCAAATACGTTT
GCCGAAATCAACCTAAACCCCTATCAGGGATTGAAAC	CAGTAATTGCTGATGAAGTCTCATCAGAACAGGCTTC
GCCGAAATCAACCTAAATCCCTATCAGGGATTGAAAC	CTGTATATCAGTGATTCCCGTAGCATTCCTAAATC
GCCGAAATTAACCTAAATCCCTATCAGGGATTGAAAC	TCCTTGCGATTGACAATGAAGCCCGCCAGCGAGC
GCCGGAATCAACGTAAATTCCTATCAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177695.1\|4881529_4881703_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177699.1\|4886314_4887139_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_019729.1\|WP_015177692.1\|4877054_4878680_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_019729.1\|WP_006631540.1\|4879893_4880049_+\|DUF2256-domain-containing-protein	unknown	unknown	gnl\|CDD\|378353
NC_019729.1\|WP_015177690.1\|4871991_4873032_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NC_019729.1\|WP_015177697.1\|4883411_4884800_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184646
NC_019729.1\|WP_015177694.1\|4880121_4881057_+\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|271340
NC_019729.1\|WP_041623317.1\|4870709_4871444_+\|Mo-dependent-nitrogenase	unknown	unknown	gnl\|CDD\|369150
NC_019729.1\|WP_015177693.1\|4878942_4879731_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NC_019729.1\|WP_015177696.1\|4882487_4883231_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177685.1\|4867059_4867860_-\|TIGR01548-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|273685
NC_019729.1\|WP_015177683.1\|4865338_4866157_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015177684.1\|4866463_4866700_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177682.1\|4864363_4865110_-\|cobalt-precorrin-6A-reductase	unknown	unknown	gnl\|CDD\|376826
NC_019729.1\|WP_015177691.1\|4876593_4876989_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222800
NC_019729.1\|WP_015177681.1\|4863015_4863654_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015177688.1\|4869060_4870134_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_019729.1\|WP_015177698.1\|4885278_4886289_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368795
NC_019729.1\|WP_015177686.1\|4868048_4868348_+\|30S-ribosomal-protein-PSRP-3	unknown	unknown	gnl\|CDD\|235062
NC_019729.1\|WP_015177680.1\|4862295_4862904_+\|GspH/FimT-family-pseudopilin	unknown	unknown	gnl\|CDD\|227305

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177699.1\|4886314_4887139_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.27526e-98
NC_019729.1\|WP_015177692.1\|4877054_4878680_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.33497e-69
NC_019729.1\|WP_006631540.1\|4879893_4880049_+\|DUF2256-domain-containing-protein	gnl\|CDD\|378353	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256). Members of this family of hypothetical bacterial proteins have no known function.	3.70378e-18
NC_019729.1\|WP_015177690.1\|4871991_4873032_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NC_019729.1\|WP_015177697.1\|4883411_4884800_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184646	PRK14360, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NC_019729.1\|WP_015177694.1\|4880121_4881057_+\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|271340	cd14949, Asparaginase_2_like_3, Uncharacterized bacterial subfamily of the L-Asparaginase type 2-like enzymes, an Ntn-hydrolase family. The wider family of Asparaginase 2-like enzymes includes Glycosylasparaginase, Taspase 1, and L-Asparaginase type 2. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.	1.92545e-154
NC_019729.1\|WP_041623317.1\|4870709_4871444_+\|Mo-dependent-nitrogenase	gnl\|CDD\|369150	pfam06967, Mo-nitro_C, Mo-dependent nitrogenase C-terminus. This family represents the C-terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria. Note that many family members are hypothetical proteins.	2.27495e-60
NC_019729.1\|WP_015177693.1\|4878942_4879731_-\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.18891e-93
NC_019729.1\|WP_015177685.1\|4867059_4867860_-\|TIGR01548-family-HAD-type-hydrolase	gnl\|CDD\|273685	TIGR01548, Imidazoleglycerol-phosphate_dehydratase, haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. This model represents a small and phylogenetically curious clade of sequences. Sequences are found from Halobacterium (an archaeon), Nostoc and Synechococcus (cyanobacteria) and Phytophthora (a stramenophile eukaryote). These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs. The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.	1.16987e-64
NC_019729.1\|WP_015177683.1\|4865338_4866157_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.63974e-21
NC_019729.1\|WP_015177682.1\|4864363_4865110_-\|cobalt-precorrin-6A-reductase	gnl\|CDD\|376826	pfam02571, CbiJ, Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyzes the reaction: precorrin-6Y + NADP(+) <=> precorrin-6X + NADPH. CbiJ and CobK both catalyze the reduction of macocycle in the colbalmin biosynthesis pathway.	3.07417e-104
NC_019729.1\|WP_015177691.1\|4876593_4876989_-\|hypothetical-protein	gnl\|CDD\|222800	PHA00458, PHA00458, single-stranded DNA-binding protein.	2.90472e-05
NC_019729.1\|WP_015177681.1\|4863015_4863654_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.34663e-15
NC_019729.1\|WP_015177688.1\|4869060_4870134_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.69874e-18
NC_019729.1\|WP_015177698.1\|4885278_4886289_+\|hypothetical-protein	gnl\|CDD\|368795	pfam06217, GAGA_bind, GAGA binding protein-like family. This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.	0.00679444
NC_019729.1\|WP_015177686.1\|4868048_4868348_+\|30S-ribosomal-protein-PSRP-3	gnl\|CDD\|235062	PRK02724, PRK02724, 30S ribosomal protein PSRP-3.	5.37013e-67
NC_019729.1\|WP_015177680.1\|4862295_4862904_+\|GspH/FimT-family-pseudopilin	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	1.06387e-12

>NC_019729.1|WP_015177690.1|4871991_4873032_+|GTPase-ObgE
MQFIDRADIQVAAGKGGDGMVAFRREKYVPAGGPSGGTGGRGGSVFMVAVESLQTLLDFQYNRIFKAEDGKRGAPKNMTGASGDDRTIEVPCGTVVYDAETQAILADLVTPGQTFCVAKGGKGGLGNKCFLTNSNRAPDYAMPGKEGEHKFLRLELKLLAEVGILGMPNAGKSTLISALSAARPKIADYPFTTLVPNLGVVRKPTGDGTVFADIPGLIEGAHEGAGLGYEFLRHIERTRLLLHLIDITDEDPIANYVTIQEELKAYRRGLADKPQILAFNKVDAIDLESEEIANLISRLKEISGAPVLLISAVSRLGLDELMQQVWQKLDEMNEKEAAEQLAVASV
>NC_019729.1|WP_041623317.1|4870709_4871444_+|Mo-dependent-nitrogenase
MLMSNAKSSCTNEEITAWLRGLLTIAWADGNFDEDEQKMIANLTQDELHPVSFEEGFEPIAPEELAAVLGKDTAKGEDFLRTAVMVALADGTYSLSEDEVISKFCTALGHNVDAIEALRHTIEDSKCNPQGPSSQIVFDANVVPAAGTPLSSRLPKPHHKNVLQPVKDWLDGWEIHDPKLAHFVCKIIPPQCPFERDVVLFGHKIVHIPAMCQINPLYEQLVGMRFRALCYLADECKEDVSSYC
>NC_019729.1|WP_015177688.1|4869060_4870134_+|methyltransferase-domain-containing-protein
MGAESTIDQTEKLPLVVNPDILQQAILYKINTRINARGELVFPCIPGMLSHYLKSIEKLFSTLDRPLPEDRRDELSKLLATKLEQGYRTSTASMLILQYESVQPPQTGLACKVIVTTSTVGEQYKSWVDTREPPLFGSHPDAKLMTTAAKLGTPDRVRILDVGAGTGRNTLPLARLGYSVDAIELTPAFAEQLKAAVTAENLPVTVTEGDVLDPLMRMKPARYQLAVAAEVISHFRDSDQVRLFLAKMCDSLSPGGLLLFSTFLTVGDYQPDALVRQVAQLSWSTLFTPQELATAMEGLPLVQISDELVFEYERHHLPEGAWPPTPWFSSWATGRDVFPMANARPPMELRWILCRRS
>NC_019729.1|WP_015177686.1|4868048_4868348_+|30S-ribosomal-protein-PSRP-3
MSKFILKVLWLEENVALAVDQVVGKGTSPLTSYFFWPRKDAWEDLKNELEAKHWIADNDRVEILNQATEVINYWQEEGRRRPMTEAQSKFPQVTFTGSN
>NC_019729.1|WP_015177685.1|4867059_4867860_-|TIGR01548-family-HAD-type-hydrolase
MNRVIVVFDIDGVVRDVSGSYRRAIADAVEHFTAGAFRPNSLDIDSLKSEGVWNNDWQASFELVCRYFEGIGRSRNQLALNYDELVAFFQSRYRGPDEKNWTGYICTEPLLLSPAYLENLTVGGIVWGFFSGAMRDEAAYVLSGKLSLNSPVLVAMEDAPGKPDPAGLFAAIEQLENLHGLEKNLPVIYAGDTVADIYTVGKAREVQPNRVWLGAGILPPHVLDDAVRCEAYAAVLENAGAAAVFRNVEELTAARIWELVLLTVDC
>NC_019729.1|WP_015177684.1|4866463_4866700_-|hypothetical-protein
MLVSRSSDKQPTPEETRQLEKLQVQIERAVADGKISKQEMEDINRAIWADGKVTVEELEMYRMLVTDRIVSGDVEYEF
>NC_019729.1|WP_015177683.1|4865338_4866157_+|tetratricopeptide-repeat-protein
MIRSLFTFFTVLIVTGLVWLGNIAPVAAQVQPTDIADPQQELEELVQKAFEATNEGQFPAAETFWTQIIDKFPSQAAAWSNRGNSRVSQNKLQAAISDYERAIELAPDAPDPYLNRGTALEGLGRWSEAIADYNHVLELDSQDPAAYNNRGNAEAGLGQWEQAIADYSKAFELAPEYAFARANHALALYQNGQTKEAIRNMKNIVRRYPQFADMRAALSACLWEAGKRGEAESNWVAAIGLDSRYKDLDWVAHNRRWPPLAVSALDKFLHLK
>NC_019729.1|WP_015177682.1|4864363_4865110_-|cobalt-precorrin-6A-reductase
MKKRLLILGGTGDAAELAARASQIAEIEVVSSLAGRTQQPFTPKTGTVRIGGFGGAAGLAAFLVDRPIDLLIDATHPFAARISANAAVAAAECNVPYLMLVRPAWERVEGDRWIEVAGHSEAARALLGQSRRVFLTIGRQELAAFAGLDAIWFLMRAIDPPALNTPIPNGKLLLARGPFSLEEERQLLLEYQIDTIVSKNSGGGATYAKIVAARELGIPVVMVQRPPIADVEQVADVEGAIAWLVKQL
>NC_019729.1|WP_015177681.1|4863015_4863654_+|Uma2-family-endonuclease
MQLELKQIIIQPGNQLLLKDITWPMFETLLTELGESRASRLSYSKGTLEIMVPLPEHEIGKENIGDLVKILLEELDREFWSLGSTTFKNQKMAQGVEPDTCFYIQNEAAVRGKSRIDLETDPPPDLAIEIDLTSRTQFNNYEALGVPELWRYNGRHLQISVLQDGKYIQGDRSLQFPNFPITELIPQYLEQSKTAGRNVAMKAFRSWVKAQI
>NC_019729.1|WP_015177680.1|4862295_4862904_+|GspH/FimT-family-pseudopilin
MKTPPILLKLLHNSAAKPSHNFNKTASRKDDGGFTLLEVLVIALIIGIFSSIAAPSWEAFINRQRVRTVNDRVLQSLRLAQSEAKRTKRDVTVTFSYNPNASPAIDPPTVTINNITQQLNAGGEIKPQTIALTVNTPAAPTTPPNSIVFDYQGNLTTGITPFYVTVAPSRGGTKQCVIVDTILGGMRTDEGTFDTSTGKGCK
>NC_019729.1|WP_015177691.1|4876593_4876989_-|hypothetical-protein
MKLYIRLACLVALSTLAVGVSPASSNPAPEYQTDGVTVINNNIQLNRAKNLARQAAEVANGGLGNYRAEASMHGTSKESPFVDNGDGTWTFTFKGYKPGSSVYTVETVVTVSQDGRIRVDYNGRIRNSNPL
>NC_019729.1|WP_015177692.1|4877054_4878680_-|serine-hydrolase
MAERFPKGSILSVISSSISSPNSGSKQPKSGKASQSGNSGRRRPPQPQNGNSEIRSPEPATLPLQQGRGSRIGANSPTSSEEFTTQDFLSDPRSAINPRKPRTSKTPQSKTRQPRKKGLAAVDMFEFPDPTLERENVSSIASNPNSQLPTATPPATRGSRPSSPPVRIPDTVIPPDAKKPPVPQPRPQASQRPGKRPAPRSVPPLVYATRLLILGVGMAVICGTLLSVVNAVSRASTVAPEEQTTAGQKNPADSASAASATPEVLQLNQELGALKTQVQVLATENPSLTAGIFLVDLDTGSYLNFNGDTAFASASTIKVPILVAFFQAVDEGKVQLDQMLTLKPEHIVGGSGEMQDDSPGKKYSALEVAQKMIVVSDNTATNMMIELLGGAEVLNQHFANWGLSTTVLRNKLPDLEGTNTTSPKDLINIIAQVDRGNLVSVKSRDRILQIMRQTRNDSLLPKGLGEGSVIAHKTGNINTMLADAGMVDLPNGKRYLVAVMVKHPPETEKPAQALIREISRMSYRYLNGGETPADSQVKIKN
>NC_019729.1|WP_015177693.1|4878942_4879731_-|RNA-methyltransferase
MLETAGANIRIVLVEPAGPLNVGSVARVMKNMGLHQLVLVNPQCDHLGEEARLMAVRAADILETAKVVESLPAALVGCVRAIATTGDDSRSLPTQLEEPAEALPWLLEAPSALIFGREDCGLTNAELNRAQRLIRIPTSDAYTSLNLAQAVAICCYELYKSVVSCQLSVVSGQKESAPLEHLEGYYRQLETLLLKIGYLQQHTAASRMEKFRRLYNRAYPTVDEVAMLRGVLRQTEWAIKTYPRETNSDTLDGALPENQTDS
>NC_019729.1|WP_006631540.1|4879893_4880049_+|DUF2256-domain-containing-protein
MAKQRSKSDLPTKMCPVCDRPFTWRKKWADCWDEVKYCSERCRRRRLAAQD
>NC_019729.1|WP_015177694.1|4880121_4881057_+|isoaspartyl-peptidase/L-asparaginase
MASQQVQPKLVIHGGAGSSLHSKGGIEAVRKSLYDVLEEVYPLLKDGASAVDAVVRGCQLLEDDPRFNAGTGSVVQSDGQIRMSASLMDGLMQRFSGAINVSRVQHPIELAQFLQHSDDRVLSDFGSAELLRELQLPIYDPMTDLRLHEWMQERQGNFSKAMADVVAEPAGMGTIGVVALDVHGRLAAGTSTGGKGFERIGRVSDSAMPAGNYAAQSAAVSCTGIGEHIMDECLAARIVIRVTDGLSLKAAFERSFTEADERQRDFGAIGIDASGAIAFGKTSEVILGAFHNGMEMGDTLEMSKGTLIFIA
>NC_019729.1|WP_015177695.1|4881529_4881703_-|hypothetical-protein
MQLPEERNRALKQKRLAEQKQKIVSGTEQIAQGKVTNGESSVPKLPEKNRSISESKE
>NC_019729.1|WP_015177696.1|4882487_4883231_+|hypothetical-protein
MKIIKQTASELIIQTQSIFDFWFPSCLFMIFGLISLTFDYHAASLSCQRLQAKQGKCQIVRSNLLGSNIKEIELASLRGAKVERCGYKTRVVLLTSVGNVPFTANSPNWGTQDAVASDINFFVKNAKNRLLRLSQDERWLGWTGGIFLLTGIAAIVLRNNETYSFDETLNTLTVKQRGLLASTVIQYSLCEIYGVEVDRTEDRGNDIWYEVRLLACGGSRISLPRTMNPYQQAKIAKAINNYLHQQK
>NC_019729.1|WP_015177697.1|4883411_4884800_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MVAIAILAAGRGTRMKSDLPKVLHELGGRSLVERVLQSCQEIQITRRLVIVGYRGELVKESLIRGQEKSGKNPQSPPLEFVEQTEQLGTGHAIQQLLPHLEGFKGDLLVLNGDVPLLRAETIKQLIAIHQQHQNSATLLTANLPNPQGYGRVFTDSQNLVEQIVEDRDCTQAQKQNHRINAGVYCFHWPDLEKILPELKADNDQKEYYLTDTVNFLSPVMAVDVEDYQEILGINDRKHLATACDILQTRIKDKWMTAGVTLLDPNSITIDDTVELQPDVVIEPQTHLRGNTSIASGSRIGPGSLIENSQIAENVTVLYSVVSDSMVAENSRIGPYAHLRGHAEVGANCRIGNFVELKNTQLGDRTNVAHLSYLGDATLGEKVNIGAGTITANYDGKNKHKTQIGDRSKTGSNSVLVAPITLGENVTVAAGSVVTEDVPNDGLVIARSRQVVKPGWKLKEPKK
>NC_019729.1|WP_015177698.1|4885278_4886289_+|hypothetical-protein
MTELNFQELAKQGNLATAIASWLNSQLQSEGITASANLDGDCLDVILEAEQVPIENTLVDFVRTELTNLQPDSIRKVKVEGRESGQIAAAWSQEFSLENSNFEQQSFAGEAVPNTAVANMDDRMENNFEQEKPPELAAFENRLRSTFIVVGLVTGMLAIAVVAFVGKILNQPTANAGNNTDETANLATPPDTAPDTFREAVNSALKAAELGRVAKTKEDWTIVTDRWQEAVSLMRRVPVSSPNHQLAQAKVIEYQKYLLYAQEAAVTPPLPTPTPAPAEKLPSEKSTPKKSNSPKETSEKATPKKSNSENRASEKATSKKSPSDKKEEPEKKSPSR
>NC_019729.1|WP_015177699.1|4886314_4887139_+|sulfurtransferase
MTDNTLIVSPEWLATHTDNPQVVIIDCRFSLADPELGQKQYQESHIPGASYLDLNRDLASSVGKHGGRHPLPNIEELADKLSAIGINSPETLVVAYDDSRLAFAARLWWLLRYMGHSKVAVLDGGFSAWKAAGYPVTSILPDPREGKFIARLQQDLAVDIEAVKERKDLPGQVLVDSRESERYEGLREPIDPIAGHIPGAVNYPWQGVTDETGKVRSASEQKQRWTELEKAEEIIVYCGSGVTACVNLLSLEIAGIPDAKLYVGSWSDWCSYQL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_019729_45

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_45

4923176-4923255

TypeV

Consensus_repeat	Method
TTGTGGAACGGGCATCTTGCCTG	CRISPRCasFinder

1 spacers

Cas14c_CAS-V-F

The CRISPR arrays of NC_019729_45

>merge|NC_019729|45|4923176-4923255|CRISPRCasFinder
TTGTGGAACGGGCATCTTGCCTGTTATAACCCTTTCTATCCAGATGTCTAGCCTCTTTTGTGGAACGGGCATCTTGCCCG

>NC_019729|45|44|4923176-4923255|CRISPRCasFinder
TTGTGGAACGGGCATCTTGCCTG	TTATAACCCTTTCTATCCAGATGTCTAGCCTCTT
TTGTGGAACGGGCATCTTGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177728.1\|4927894_4928680_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177726.1\|4924162_4925959_+\|precorrin-3B-C(17)-methyltransferase	unknown	unknown	gnl\|CDD\|381173
NC_019729.1\|WP_015177733.1\|4932292_4932697_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177727.1\|4926280_4927492_+\|transposase	Cas14c_CAS-V-F	-	gnl\|CDD\|223747
NC_019729.1\|WP_015177715.1\|4909747_4910527_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019729.1\|WP_015177716.1\|4910648_4911866_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|378215
NC_019729.1\|WP_015177729.1\|4928863_4929625_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|313370
NC_019729.1\|WP_015177732.1\|4931692_4932286_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177721.1\|4914340_4916200_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|223929
NC_019729.1\|WP_015177730.1\|4929747_4930689_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|313370
NC_019729.1\|WP_015177731.1\|4931428_4931635_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_019729.1\|WP_190274241.1\|4930734_4930875_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177722.1\|4916369_4918055_-\|NAD-binding-protein	unknown	unknown	gnl\|CDD\|367001
NC_019729.1\|WP_015177718.1\|4912986_4913547_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_041622656.1\|4919317_4919836_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111686.1\|4918629_4919241_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372967
NC_019729.1\|WP_041622655.1\|4909098_4909404_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622657.1\|4930994_4931375_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177720.1\|4913863_4914259_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NC_019729.1\|WP_015177717.1\|4911930_4912908_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177726.1\|4924162_4925959_+\|precorrin-3B-C(17)-methyltransferase	gnl\|CDD\|381173	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH). Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.	3.84628e-129
NC_019729.1\|WP_015177727.1\|4926280_4927492_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.03272e-56
NC_019729.1\|WP_015177715.1\|4909747_4910527_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.06494e-26
NC_019729.1\|WP_015177716.1\|4910648_4911866_-\|CapA-family-protein	gnl\|CDD\|378215	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	3.09174e-93
NC_019729.1\|WP_015177721.1\|4914340_4916200_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|223929	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	7.81565e-57
NC_019729.1\|WP_015177730.1\|4929747_4930689_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	9.28667e-52
NC_019729.1\|WP_015177731.1\|4931428_4931635_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.46717e-18
NC_019729.1\|WP_015177722.1\|4916369_4918055_-\|NAD-binding-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	3.68214e-24
NC_019729.1\|WP_015177718.1\|4912986_4913547_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.42052e-25
NC_019729.1\|WP_150111686.1\|4918629_4919241_+\|hypothetical-protein	gnl\|CDD\|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	4.89427e-31
NC_019729.1\|WP_015177729.1\|4928863_4929625_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	2.49894e-59
NC_019729.1\|WP_015177720.1\|4913863_4914259_-\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	1.31551e-06

>NC_019729.1|WP_041622656.1|4919317_4919836_-|hypothetical-protein
MKTKNPKAVTLASLLAMATLSSILMPVATAKNFSSEVKPLHLENRLSQAVLPKINGYWNLQVRINGFTQPGLSNERDYLIITSLNQNESKLTGNFIAASSNACKQAQISGTVQNNQVNWVINYTGSCCKNAQMRFEGVRRSAEVIEGKLTPVGTPSNCSLWFADVTATKRRD
>NC_019729.1|WP_150111686.1|4918629_4919241_+|hypothetical-protein
MKLTAPLLASALVFAGTVALASQVQAAPTSNWNSTRTTFQCVTSGRNFVTIARRGNVTTDPMILWKSTEFGREYTPWQRCQIVSNRLTKAVAQNGGRLSNLQLTTGIVNNLPVVCYVNGRGRCNSQNLLFTLDKRNAKNPGDALTRLINFAQDGGGPVTTFRTGTQSSAPQFVPFGDMVDRAFNSPNKKPSVPVAKPQGDRGI
>NC_019729.1|WP_015177722.1|4916369_4918055_-|NAD-binding-protein
MKPRIIVGGLGHTGHKIFCLLRQQGAIVVGISDRPIRGETSDVVVGNLQAASTLLAAGIQNAHTLVIAGDDDAVNLAILMQARILNPQIRIINRLFNTSLGDRIDHTLPDHTSMSVSSLAAPVFAFAALGNQAIGQLRLFDRTWPIHEEYIDETHPWKNRKLSDLWEDRSRMLIYYLPAANKTDLVSAVLADRQCQQGDRLIVATQPTIHSPQKTLTQKLLKTLTRLHRFQQHSQAAVIVVLTLLAMIAVATATYICVDEHISIVDSLYFSVGMITGAGGHEKVAEQAPESIKLFTVVMMLVGAGIIGICYALLNDYVLGTRFTEYWDVARVPQRNHYIICGLGGIGIQIAKELHTNGYDIVAIEQDPNCRFLNTARSMKIPVIQGSASLPATLEAANVKQAAALLAVTSSDMSNVEIALSAKGLAPKLSVIVRNQDPHFALMVQQVFEFEGVLNPTELAAPAFAAAAIGGRILGNGMTADSLWVCLATLITPNHPFCGHRIQDAAKSADFVPLYVETNCQTLHGWDLLNCCLSTGDVLYLTMPANRLEQLWRTTSELIKT
>NC_019729.1|WP_015177721.1|4914340_4916200_-|N-acetylmuramoyl-L-alanine-amidase
MRKFLGLVVFGMIVAIASVAVAAQPLFLAYPPANHKTTADRIFLIGTAPAPGQVSVNGNQISRTAAGHFAPTFPLQLGENVFTLRYENQEVKIKVTRESNQPEAPVGLAFAKDSLTPKVDVASLPGEYICFGAIAPANAQVSVKLAGITIPLKARSQVELPDNKSVLLGENSPIKKGGSQQYQGCGKTPPNPPLLRGGNESNAALARGGNESNSSLPKGEKIDLGVPVFELTMNDRTISQQGTGKISILSPADLEIAEVTADPGVARTGASTDFSRMTPLPKGTRATIIGREGEWLRLDYGAWIKASEVRIVQDSVPVRSIIRSASSRQVSGWTEVLFPLEIPVPVTVQEGERTFTLTLYNTTAQTDIIRLSDDPVISRLEWQQIAPLQVQYTFNLKSAQQWGYKLRYEGTTLVLSLKNPPVNTSMMPVSQAKPLSGIKILIDPGHGGPEDSGAVSPVGIREKTVALTVSKLVQQELVNRGANVVMTRVEDVDLDLPPRVEMIQKEEPAIAISIHYNALPDNGDAIKTKGVAAFWFHPQAHSLAMFLHNYLVAKLNRPSYGVFWNNLAMTRPAVAPSVLMELGFLINPEEFEWILNPTEQKKLAEAIAQGVTEWFASVK
>NC_019729.1|WP_015177720.1|4913863_4914259_-|SH3-domain-containing-protein
MLIFTQSKAFFIAAVVASFSFSLYSFPVFGKQQSLAPAKAEALKKQTQCSFITGEGGAVNIRKGPGNKYPVVAKLKRGDGVRAVSRQGNWVKIAARFSGNPPNETLTILDGWVNNQFINGCSEDQFDRWRK
>NC_019729.1|WP_015177718.1|4912986_4913547_+|Uma2-family-endonuclease
MTIATERLTLEQFLKLPETKPASEYIEGEIIQKPMPKTKHSLLQLRTCNEINQVTQTPKIAYAFPELRCTFGGRSIVPDIAVLLWEQIEFDESGEPLDDVLIAPYWAIEILSPQQSSNRVTRKILHCLQHNCQLGWLIDPDDRSILAFLPNQQPQFCEGSDVVPVPEMIPLNITAEQVFSWLRMQQ
>NC_019729.1|WP_015177717.1|4911930_4912908_+|hypothetical-protein
MKNNYLILAFIVFVAITGFGVLTYAQTSVNRPFEFALIGDLPYSAEQEAKFPNLIADINRSPAAFVVHDGDIKNGSSVCDDATFVSRKQLFDNFEMPFILAYGDNEWTDCHRSNNGSYDPVERLAKLREIFSNGNQSLGKRTLTLTRQSENPQFAKFRENVRWIYHGVVFLAINMPGSNNNFGRTPEADAEYADRNWANLAWIEESFALAKRSNSKGIVLVAQANPGFEFDPTDKRRSGYNDFIATLETETGNFPGQVVFVHGDTHYFRIDKPLPHFTDETQLPRMKNFTRVETFGSPNVHWLRAFYDPKNPNLFEFKQQIVPEN
>NC_019729.1|WP_015177716.1|4910648_4911866_-|CapA-family-protein
MNFRRLLSVIAMLSIAGCNIQTPQTNTQPTESRSLRGGTPSPIATPVSAEPKSEIEEAKLIAVGDIMMHSTQTRSGYDAKKQTYNFDSFFAPVKSILSTGDWVIGNLETPLAGEDAGGYTGYPLFNAPAQLADAAKKAGFNILTTANNHALDRGEKGVIRTIANLRDRKIASTGTAESKAASDRTLISTKNNISLALLAYTYGTNGIPVPKGKDYLVSLIDEKKIIKDIAKARKQGADIIAISLHFGNEYQRQPNTQQKQLVENLLKAGADIILGSHPHVVQPYKIFKFSGKNGKTRKAVAIYSMGNFISGQNKKYTDLGVIFQVNIRKIFPEKTTEITEVKTHPTWVQSYSLNNKLNYRVLPLAKTVTDKKDPLLATSEYPVLTRDLQDMNNHLNSLNKPQDKK
>NC_019729.1|WP_015177715.1|4909747_4910527_+|calcium-binding-protein
MVITGTEEADSLKGTTENDVIYGLAGDDSLVGLGGNDFLYGGEDDDTLYGGFGDDQLFGENGDDFLDGGYGYDQLNGGSGNDELRGGYADDILIGGSGNDKLDGEFGDDFLIGGTGNDSLYGGDGNDILTDSGVGRDGSDYLDGGSGNDRIIAYGYGPEIDADTLVGGTGLDTFVLGAPGQAFYNVDGDADYALITDYLPFADTIQLQGSASDYILDGSPIQGISGTAIYREENSNYELIAVLQDRFLTQSALGLFTYV
>NC_019729.1|WP_041622655.1|4909098_4909404_-|hypothetical-protein
MGYSNTNCRSYSNVKSPLANNNLPLGTGVFSAGGSIARIKNQIVTDVGCVRENDITRNQGKAVPFPYKSGDRYIRSRDRPELRQILMDFFCIILAVRTNYS
>NC_019729.1|WP_015177726.1|4924162_4925959_+|precorrin-3B-C(17)-methyltransferase
MVRLPPAIVILGQNSLPIAKKISAHFPGSQIYGLIDRTNDTDINFSNFGETLRELFATQTPIIAICAAGIIIRTLAPLLSDKRAEPPVLAVAEDGSAVVPLLGGLHGVNDLAREIAAALGVQPAITTTGDIRFRTALLSPPQGYSLANPEDAKTFISNLLAGEKVRLEGAASWLSESNLPLAKPAPTGATPTQRIAPDPKLTIRVTEKAIAPTPDCLVYHPQIVAVALAKLSNIEPEIAVSLVQQVLENAGLAAASVAGFFALKEEMGNPALEAVSQYFKVPVRFFNLSELVELDSIELIENQAAQIALTAAGANSQLIERDRPNALNCAIALAAEPLDASAIGVSRGKLAIVGTGPGGAPWMSPEVKEILREATDWVGYKFYLDLAGTLREGQKRHDSDNREEIDRARFALDLAASGKSVAVVSSGDPGIFAMAAAVFEAIDFDAKPEWQGIDIRVAPGISAMQAAAAAIGAPLGHDFCAISLSDILKPWEVIEQRISAAAIADFAIAFYNPISKQRMWQLSRAIEILLQSRDAKTPVILGRNLGRPGQSVRVCTLGEFQPQDADMRTLVIVGSSQTRIIPRKYGDVWVYTPRRYEK
>NC_019729.1|WP_015177727.1|4926280_4927492_+|transposase
MLVFEFKAYGKKQQFDAVDEAIRTVQFIRNKALRFWMDNEKVDKYALNKYSAVLAKEFPFCDELNSMARQSSSERAWSAISRFYDNCKKKVPGKKGFPQFQKHNRSVEYKTTGWRLADDRKSITFTDKKGIGKLKLKGTRDLHFYQRSQIKRVRLVRRADGYYVQLCVQVDRSEEIEVTGKTIGLDVGLKEFYTDSHGVAVDNPRFLRKGERRLKKAQKRISKRVKGSQNRKKARAILGKRHLKISRQRKDFAVKLARCVIQSNDCVVYEDLRIKNMVKNHCLAKSINDASWYMFRIWLEYFGKVFGRITIAVPANGTSQECSSCGTIVKKSLSTRTHACRCGCVLDRDWNAAKNILSRGLSTAGHVGTWILDPNACGELTATDVEVILHRQVDSANQESPRL
>NC_019729.1|WP_015177728.1|4927894_4928680_+|hypothetical-protein
MKFHIPLAPGAVTQFLLRVVTCLAVLSFLSQISLYYLPDYPLREYLAKVFNVDAERNLPTFYSFLALLFSSLLLGAIAYAKNLDSDRYKNHWKILSFIFLYLSLDEAGQLHEKFIDPTRSLLNGSGFLYFTWIVPFGLLVVIFLLSYSKFVFHLPVSTRKLFVAACALYIAGAIGMEIPGGYLFSTMGMESVPYLIVASIEELLEMLGIVVFIHALMSYIKTYLGGVSWNIYIPGKNTQVTEHQNIGLSDLSEPANTNLLR
>NC_019729.1|WP_015177729.1|4928863_4929625_-|nucleotidyltransferase-domain-containing-protein
MTEYISNLAQIISVRPYPLLFATVSGSHLYGFPSADSDFDLRGVHILQLPKVIGLISGEETIEVSEVRDGMQLDLVTHDIKKFFELLLKRNGYVLEQLYSPLIVYTTKEHEELKNIASNCITKHHSHHYLGFAKTQWKLFEKEHPRRVKPLLYVYRVLLAGIHLMQTGEVEANLVKLNDKFQLSYIPDLIDRKLAGEEKSVLEDTDIEFYQQERDRLINILEDASFTSHLPSNPNAKVALNDFLVKARMSSVN
>NC_019729.1|WP_015177730.1|4929747_4930689_-|nucleotidyltransferase-domain-containing-protein
MANANLPQNFNLIIPAGTQIVTKIEVKNPAGAQSWKPGLVGVIVQSPTDNSHAYLVKLPDGTEVSLRRHELSIRKQFQSEGLQSGGDFLAEYNLYDSVIYRCILGSRAYGLDNEQSDTDRRGIYLPPAILHWSLYGIPEQLENKENQECYWELQKFLVLALKANPNVLECLYTPLVETLSPVAKELLEIKEIFLSQLVYQTYNSYVLSQFKKMEQDLRNTGEIRWKHAMHLIRLLLSGITVLKEGFVPVRVQDYRSQLLSIRNQEISWDEVNRWRLSLHGEFDRAFAATKLPERPNYEKANLFLIEARRGAIG
>NC_019729.1|WP_190274241.1|4930734_4930875_+|hypothetical-protein
MCSIEGEFWAIARLGIGDIKSSKLVTITTESPVFVLKNWPCAIAAT
>NC_019729.1|WP_041622657.1|4930994_4931375_+|hypothetical-protein
MIVPHFKLPEQQQYDRISLEDAIRLYEHRLLTAAGFIYTITKIYSANGQKLNIPKPREFYEYFNIPKSTFYRALAQLGNSPELEFHWEPVVGISIWCGDEAQQVVGCVRAECDDNKLRISPDAPYC
>NC_019729.1|WP_015177731.1|4931428_4931635_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MRYAVVIEKGKTSYGAYVPDLPGCVAVAESLEEVRNLIKEAIAFHLEGLQEDAFPIPEPVSICEYVEA
>NC_019729.1|WP_015177732.1|4931692_4932286_-|hypothetical-protein
MRKPWIYRASNDKEALRQGEILTGLIQIKPVPSESSPDLDKTQFKPIVHPYAIIVTQNCDLDWDYSARQNRDKPNKLLNSVLCCQVHTAQEIRSDKTVQLNSADWNLVKSNRYQQYHFLEKIPLERESCQEGIPELTVDFKKIFAIDADFLYHQINNNFAKRRAVLESPYLEDFSHRYHDFHGRVALPAQHESEKGV
>NC_019729.1|WP_015177733.1|4932292_4932697_-|hypothetical-protein
MHVTTGGTQSKNIIGQRYEVLPTPAQTQYRHTLASGTPSLKIEVSIESPISGEWFGQFNQNTIAWVKCLTLLNLLFTNTPEGLEEASEVLERMVEYYSDCRSDLGQTTLPQELGLLTGSVLPSEVRPPLVLDFE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_019729_46

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_46

4977856-4984951

Orphan

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CRISPRCasFinder
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CRT
GCCGCAATCAAACTAAAACCCTATTAGGGATTGAAAC	PILER-CR
GCCGCAATCAAACTAAAACCCTATTAGGGATTGAAAC	PILER-CR

95 spacers

The CRISPR arrays of NC_019729_46

>merge|NC_019729|46|4977856-4984951|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CAAAAAATCCCTGATAGGGTTTTAGTTTAATTGCGGGGTAGTGGTTTACTATGCTTTCACCCTTCCAAAAGCTGTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCATTAAACCCCGCATACAGTGCCATAGCCTTTTTAAGAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAGCTGAGGGCCACAAAATGGGATCAATGCAAATATTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTACCACGCCGACGCATGGAAGTTAGCTTATCCTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAGTACCGCGTCAGTTGGGCGTGGCTTGAGTTTGATGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGATATAGCGTTTACGATGGCTATTGGTACTTCCAGTCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAAAATCGGTATATTTCCCAACCGGGTAGCCCCGGTTTGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCAAAGCCATGTTGGCGCCGATCGCAACTGTGCGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTATGAGGCCCTAAAGCTGAAGGATTGGGCTCTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCGACCCCCCTTAAAAAGGGGGGTTTCGGCTGTTAGGGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCAGCCGCTCAAGCTCTTGGCTGGCGGGTAATTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCTAGGGTGAAAAGCTTGAATTCTTCCGAGAGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTATCACTCCGGGCCCCTCACACCGGAGATGGTGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGGGGCGATACCAGCAAGCACCACCATTAATCAAGGTCATGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGAAAAGTCATTGGCGCGGGCGGAAGCGACGCTTCCTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTATATTTTAGCCTGAAACTCGTTGAGAGAAATCAAACAATGTGAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCTGCTTGTCCATTTATAGCTTAAGTACCCGTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGCTTACAGAGTTTAAAGCTTGGGCTAGCGCAGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAATGGTGGAAACCTGGGGGGATGAAAATCAAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAACAAAGCGACTGTTGCTGATGTTCCGAGTGAGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGGATGCCTCAAAATCAAATCCTTCCCGTTGTTTGTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGAATATCGTGGTTATCAATGCTATAAGGTTTTTCCAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCATAATTTCCAAATTGGAGAAAAGTTTACTAGCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAATTTTGTTCCACATCAGTCTTTGAGAATTGATTCCCGAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCATGAAGATATTGAATATTACGATCGCCTTGTGATTGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTATACTGGCAGCCTTCTGGCTGGAGTATTGGTGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCGCCACGACAAAGTATCGAATTTCAAATTTAATGGGCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAACCCACAGCCCCCACACCAGCCCGCGAGAGCACAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGGACCACCGCCGAGGGGAACTGCAACAACTACGCCCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAAACTGCTGGTGTCCGAATCTGCTCCTACCAACAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCGGCCCAATCCTCCGGCTGTTTCAACAGCACCACAGCCCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAGGCTTCCGGGGTGTTCCACTAATTTGAGCGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAGAAATAGAGGTTTTGGTAAACCTCAGCCGGAAACACTTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGCTGGTAATCTGATCTCAATGAATGAAATTAAAGAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCAAAAATTACGCAGGCATAATCAGCAAGCTTGCACGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGAAGATAATTATTATATATATACTAAGGGGTCAAACGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCACGAACGACAGATAGATCTCAATCAAGACGAAGCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGCGATTAGTTAGTCAGCCCCACGAGAATTTAGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGTTACGCTGGCAATCCCTTCTACTGTCACCCACACGGCGGCGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCAGAGCGTAAATTGTGCAATTGCTCGGTAATTCCATACGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTGGCTCAGCTCAATTATGAGAGGAGCAATGTAATATGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAATAATCATAAAGCCACCACTGAAGAAATTATGAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCGACGTTGGCAGACCAATTGGTCGCAAAATACAATTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCGCCGAATTCCGCCAGATTGAATGGCTTTGGAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCGCCAAAGCAACGCCTGGGAGGTGGTAGAAGGGAAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGTACGCGGGGCGCTTGGTGTTATTTTTTTGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGGATCGCATCCCTCGACCTCTGGCAACAAATCAAAATAGCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCACAGCCTTAAGCCCTTCGGGAGTGTGCCGCGACCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTATCAGCGACCTTACCCAAAGCCGGCAAAAGGGGAAGAATTCGGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCGGAAAGAGTTTATGCGCCCTCAAAGCGATACTTGCGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAGAGGCGTACAAGTCGAAGTATTTAAATCACTCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAATGATTCGAGCCTCGATACCCTCAGCCCTGGAGTCTCTTGATTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCCCTCAATTCACTCAAGCTCGCACCAAATACAAGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTGTCATCCTTGATGAGTCGGTGTCTGTGATTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAGCATTAAGTGATCCTCGTCAAACTGATATATTAGCTATGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGGTGGTTGTCGTAGTGGAAAGCAGGATCTCGATCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCTACCATCTAACTATCAACAACGACATAACCCATCCGTCAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGGGTACGATAAGCCCCAGCCCGGATTACTCTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCGAGTTGGTTTGTGGGAGACTACCCGATTTACTGTATCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCTGCGACAGCGGTTGGTGTTTTAGATGTGACAGCACCTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTTACACAATGTTAAGCTTTTACTCCCCACCATCTGTGCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGTGTCGCCGACCTCCAGCAGTCGCAGGCAGCTTACCAAAAACAGCAGTTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCGTACTGTTTTGCCAGCTCTGGGTCTACCCAAAACGCCATAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGAGTAGAGTCCCGCCAGACTTGCGTGTATTCGATTGAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTAGCTCATTCCACTTTGGATTGTTGGAGTCCCAAAAATACTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGGCTATGGTTGAGGAGTTTATGGGGTCAGAACGTTTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGGAAAATTGAATAACGGCTTGAGCGCTTTCGAGAAGATGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTGAAATTATGAGTTGGGAAGGGCTTTAATCCCTTCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTATTTGTGCGTGTCAAGCGTTTTTATGCGTGTAATTTAGTTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTAAAATCAGGCAAGTACGCATTTCTTGCGTGTGGAAATGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTATCCAGTCGGACGATGACGCAATTCTATGAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCGCCACTTCCTAATTTTCTTCGTTATCATGGTGTTTCGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTTATGAACAGCTTGATTTAATTTGTGTTGCAGATGTTTCTGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGTTCCCCCTACTTGTTCTACCTTAGCTTTCATTAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGCGCAAAATTAACTACCATGAAGTATTGGGACCGATTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTTATGGCTCGGAATTTGAGCTTGCCAGTCAGGAAGAACGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAAGAAGCAAATAGAGCATATAGACAAACAAATAGAAACTTTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAAAAACGCAGTCCAATGTTAGACATGAGCAAAATTAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAAATGCTTTTCTCCTACAAAAACTACAAATTTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCGGGAGTTCTGGTTTTATTGTAGAGGCGCAATTAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTACTTATAGTCATCATCCCAGAACCCTTACCCCATAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAGTCACATAAGGAAAGGGAACGAGCCACTAAAGCTTAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCATTGTCTAGAGTGTATCTACTAACTTATGATGCCTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTCTAGAATGCTCAACACCGATTTTTAGTAGTCATAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGTGACTATGCTACATCCAGCTTTTTTCCAAATGCCTTTGTTTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCACGTTGCAAGAACAACACGCTGAACAAGTTGTAATACCTCAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGATCGACATGATGCAGCTAACCTACTCGATAAAATGGTGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCATAATACTAGGTGAAAAAGCAGCTAGAATCAAATCGGGTACAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAGAGACATTACTTTAGTAGTATATCAGATGAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAGCCTCTACTACTTGTCCAGACAATAATACCCCTCCAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTATCGTCCGCGCGGTCAGCGACCGCACATCGGCAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCGCAAGATTTCGTCTGAGCCGATAGCGCAGCCCAGAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCAACCCGTTCAGCCCAAATTAACAGATTGTAATTAAAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTTGACAGCACTGATTGGTTCTATCGACCATTGAGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCTAATAGTCTTGGGAATTTTGGGATATTTTTCTCTGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC

>NC_019729|46|45|4977856-4984951|CRISPRCasFinder
CAAAAAATCCCTGATAGGGTTTTAGTTTAATTGCGGG	GTAGTGGTTTACTATGCTTTCACCCTTCCAAAAGCTGTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTAAACCCCGCATACAGTGCCATAGCCTTTTTAAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGCTGAGGGCCACAAAATGGGATCAATGCAAATATTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACCACGCCGACGCATGGAAGTTAGCTTATCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTACCGCGTCAGTTGGGCGTGGCTTGAGTTTGAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GATATAGCGTTTACGATGGCTATTGGTACTTCCAGTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAATCGGTATATTTCCCAACCGGGTAGCCCCGGTTTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAAAGCCATGTTGGCGCCGATCGCAACTGTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATGAGGCCCTAAAGCTGAAGGATTGGGCTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACCCCCCTTAAAAAGGGGGGTTTCGGCTGTTAGGGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAGCCGCTCAAGCTCTTGGCTGGCGGGTAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGGGTGAAAAGCTTGAATTCTTCCGAGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCACTCCGGGCCCCTCACACCGGAGATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGGGCGATACCAGCAAGCACCACCATTAATCAAGGTCAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAAAGTCATTGGCGCGGGCGGAAGCGACGCTTCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATATTTTAGCCTGAAACTCGTTGAGAGAAATCAAACAATGTGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTGCTTGTCCATTTATAGCTTAAGTACCCGTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTTACAGAGTTTAAAGCTTGGGCTAGCGCAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGGTGGAAACCTGGGGGGATGAAAATCAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACAAAGCGACTGTTGCTGATGTTCCGAGTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGATGCCTCAAAATCAAATCCTTCCCGTTGTTTGT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAATATCGTGGTTATCAATGCTATAAGGTTTTTCCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATTTCCAAATTGGAGAAAAGTTTACTAGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATTTTGTTCCACATCAGTCTTTGAGAATTGATTCCCGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATGAAGATATTGAATATTACGATCGCCTTGTGATTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATACTGGCAGCCTTCTGGCTGGAGTATTGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACGACAAAGTATCGAATTTCAAATTTAATGGGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAACCCACAGCCCCCACACCAGCCCGCGAGAGCACA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGACCACCGCCGAGGGGAACTGCAACAACTACGCCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAACTGCTGGTGTCCGAATCTGCTCCTACCAACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGCCCAATCCTCCGGCTGTTTCAACAGCACCACAGCCC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGGCTTCCGGGGTGTTCCACTAATTTGAGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGAAATAGAGGTTTTGGTAAACCTCAGCCGGAAACACTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTGGTAATCTGATCTCAATGAATGAAATTAAAGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCAAAAATTACGCAGGCATAATCAGCAAGCTTGCAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAGATAATTATTATATATATACTAAGGGGTCAAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGAACGACAGATAGATCTCAATCAAGACGAAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGCGATTAGTTAGTCAGCCCCACGAGAATTTAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTACGCTGGCAATCCCTTCTACTGTCACCCACACGGCGGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CAGAGCGTAAATTGTGCAATTGCTCGGTAATTCCATAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTGGCTCAGCTCAATTATGAGAGGAGCAATGTAATAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AATAATCATAAAGCCACCACTGAAGAAATTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACGTTGGCAGACCAATTGGTCGCAAAATACAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCGAATTCCGCCAGATTGAATGGCTTTGGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGCCAAAGCAACGCCTGGGAGGTGGTAGAAGGGAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGTACGCGGGGCGCTTGGTGTTATTTTTTTGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGATCGCATCCCTCGACCTCTGGCAACAAATCAAAATAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCACAGCCTTAAGCCCTTCGGGAGTGTGCCGCGACCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATCAGCGACCTTACCCAAAGCCGGCAAAAGGGGAAGAATTCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGGAAAGAGTTTATGCGCCCTCAAAGCGATACTTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGGCGTACAAGTCGAAGTATTTAAATCACTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGATTCGAGCCTCGATACCCTCAGCCCTGGAGTCTCTTGATTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCCCTCAATTCACTCAAGCTCGCACCAAATACAAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTGTCATCCTTGATGAGTCGGTGTCTGTGATTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGCATTAAGTGATCCTCGTCAAACTGATATATTAGCTAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGTGGTTGTCGTAGTGGAAAGCAGGATCTCGATC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTACCATCTAACTATCAACAACGACATAACCCATCCGTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGAGTTGGTTTGTGGGAGACTACCCGATTTACTGTATCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCTGCGACAGCGGTTGGTGTTTTAGATGTGACAGCACCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTACACAATGTTAAGCTTTTACTCCCCACCATCTGTGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGTCGCCGACCTCCAGCAGTCGCAGGCAGCTTACCAAAAACAGCAGTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGTACTGTTTTGCCAGCTCTGGGTCTACCCAAAACGCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAGTAGAGTCCCGCCAGACTTGCGTGTATTCGATTGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAGCTCATTCCACTTTGGATTGTTGGAGTCCCAAAAATACTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGCTATGGTTGAGGAGTTTATGGGGTCAGAACGTTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGAAAATTGAATAACGGCTTGAGCGCTTTCGAGAAGATG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAATTATGAGTTGGGAAGGGCTTTAATCCCTTCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATTTGTGCGTGTCAAGCGTTTTTATGCGTGTAATTTAGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAAAATCAGGCAAGTACGCATTTCTTGCGTGTGGAAAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATCCAGTCGGACGATGACGCAATTCTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACTTCCTAATTTTCTTCGTTATCATGGTGTTTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTATGAACAGCTTGATTTAATTTGTGTTGCAGATGTTTCTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTCCCCCTACTTGTTCTACCTTAGCTTTCATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCGCAAAATTAACTACCATGAAGTATTGGGACCGATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTTATGGCTCGGAATTTGAGCTTGCCAGTCAGGAAGAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAGAAGCAAATAGAGCATATAGACAAACAAATAGAAACTTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAAACGCAGTCCAATGTTAGACATGAGCAAAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGCTTTTCTCCTACAAAAACTACAAATTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGGAGTTCTGGTTTTATTGTAGAGGCGCAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACTTATAGTCATCATCCCAGAACCCTTACCCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTCACATAAGGAAAGGGAACGAGCCACTAAAGCTTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTGTCTAGAGTGTATCTACTAACTTATGATGCCTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGAATGCTCAACACCGATTTTTAGTAGTCATAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGACTATGCTACATCCAGCTTTTTTCCAAATGCCTTTGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGTTGCAAGAACAACACGCTGAACAAGTTGTAATACCTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGATCGACATGATGCAGCTAACCTACTCGATAAAATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATACTAGGTGAAAAAGCAGCTAGAATCAAATCGGGTACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGACATTACTTTAGTAGTATATCAGATGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGCCTCTACTACTTGTCCAGACAATAATACCCCTCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCGTCCGCGCGGTCAGCGACCGCACATCGGCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCAAGATTTCGTCTGAGCCGATAGCGCAGCCCAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACCCGTTCAGCCCAAATTAACAGATTGTAATTAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGACAGCACTGATTGGTTCTATCGACCATTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAATAGTCTTGGGAATTTTGGGATATTTTTCTCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC

>NC_019729|46|7|4977856-4984951|CRT
CAAAAAATCCCTGATAGGGTTTTAGTTTAATTGCGGG	GTAGTGGTTTACTATGCTTTCACCCTTCCAAAAGCTGTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTAAACCCCGCATACAGTGCCATAGCCTTTTTAAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGCTGAGGGCCACAAAATGGGATCAATGCAAATATTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACCACGCCGACGCATGGAAGTTAGCTTATCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTACCGCGTCAGTTGGGCGTGGCTTGAGTTTGAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GATATAGCGTTTACGATGGCTATTGGTACTTCCAGTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAATCGGTATATTTCCCAACCGGGTAGCCCCGGTTTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAAAGCCATGTTGGCGCCGATCGCAACTGTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATGAGGCCCTAAAGCTGAAGGATTGGGCTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACCCCCCTTAAAAAGGGGGGTTTCGGCTGTTAGGGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAGCCGCTCAAGCTCTTGGCTGGCGGGTAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGGGTGAAAAGCTTGAATTCTTCCGAGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCACTCCGGGCCCCTCACACCGGAGATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGGGCGATACCAGCAAGCACCACCATTAATCAAGGTCAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAAAGTCATTGGCGCGGGCGGAAGCGACGCTTCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATATTTTAGCCTGAAACTCGTTGAGAGAAATCAAACAATGTGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTGCTTGTCCATTTATAGCTTAAGTACCCGTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTTACAGAGTTTAAAGCTTGGGCTAGCGCAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGGTGGAAACCTGGGGGGATGAAAATCAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACAAAGCGACTGTTGCTGATGTTCCGAGTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGATGCCTCAAAATCAAATCCTTCCCGTTGTTTGT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAATATCGTGGTTATCAATGCTATAAGGTTTTTCCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATTTCCAAATTGGAGAAAAGTTTACTAGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATTTTGTTCCACATCAGTCTTTGAGAATTGATTCCCGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATGAAGATATTGAATATTACGATCGCCTTGTGATTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATACTGGCAGCCTTCTGGCTGGAGTATTGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACGACAAAGTATCGAATTTCAAATTTAATGGGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAACCCACAGCCCCCACACCAGCCCGCGAGAGCACA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGACCACCGCCGAGGGGAACTGCAACAACTACGCCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAACTGCTGGTGTCCGAATCTGCTCCTACCAACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGCCCAATCCTCCGGCTGTTTCAACAGCACCACAGCCC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGGCTTCCGGGGTGTTCCACTAATTTGAGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGAAATAGAGGTTTTGGTAAACCTCAGCCGGAAACACTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTGGTAATCTGATCTCAATGAATGAAATTAAAGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCAAAAATTACGCAGGCATAATCAGCAAGCTTGCAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAGATAATTATTATATATATACTAAGGGGTCAAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGAACGACAGATAGATCTCAATCAAGACGAAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGCGATTAGTTAGTCAGCCCCACGAGAATTTAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTACGCTGGCAATCCCTTCTACTGTCACCCACACGGCGGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CAGAGCGTAAATTGTGCAATTGCTCGGTAATTCCATAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTGGCTCAGCTCAATTATGAGAGGAGCAATGTAATAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AATAATCATAAAGCCACCACTGAAGAAATTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACGTTGGCAGACCAATTGGTCGCAAAATACAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCGAATTCCGCCAGATTGAATGGCTTTGGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGCCAAAGCAACGCCTGGGAGGTGGTAGAAGGGAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGTACGCGGGGCGCTTGGTGTTATTTTTTTGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGATCGCATCCCTCGACCTCTGGCAACAAATCAAAATAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCACAGCCTTAAGCCCTTCGGGAGTGTGCCGCGACCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATCAGCGACCTTACCCAAAGCCGGCAAAAGGGGAAGAATTCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGGAAAGAGTTTATGCGCCCTCAAAGCGATACTTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGGCGTACAAGTCGAAGTATTTAAATCACTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGATTCGAGCCTCGATACCCTCAGCCCTGGAGTCTCTTGATTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCCCTCAATTCACTCAAGCTCGCACCAAATACAAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTGTCATCCTTGATGAGTCGGTGTCTGTGATTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGCATTAAGTGATCCTCGTCAAACTGATATATTAGCTAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGTGGTTGTCGTAGTGGAAAGCAGGATCTCGATC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTACCATCTAACTATCAACAACGACATAACCCATCCGTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGAGTTGGTTTGTGGGAGACTACCCGATTTACTGTATCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCTGCGACAGCGGTTGGTGTTTTAGATGTGACAGCACCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTACACAATGTTAAGCTTTTACTCCCCACCATCTGTGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGTCGCCGACCTCCAGCAGTCGCAGGCAGCTTACCAAAAACAGCAGTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGTACTGTTTTGCCAGCTCTGGGTCTACCCAAAACGCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAGTAGAGTCCCGCCAGACTTGCGTGTATTCGATTGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAGCTCATTCCACTTTGGATTGTTGGAGTCCCAAAAATACTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGCTATGGTTGAGGAGTTTATGGGGTCAGAACGTTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGAAAATTGAATAACGGCTTGAGCGCTTTCGAGAAGATG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAATTATGAGTTGGGAAGGGCTTTAATCCCTTCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATTTGTGCGTGTCAAGCGTTTTTATGCGTGTAATTTAGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAAAATCAGGCAAGTACGCATTTCTTGCGTGTGGAAAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATCCAGTCGGACGATGACGCAATTCTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACTTCCTAATTTTCTTCGTTATCATGGTGTTTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTATGAACAGCTTGATTTAATTTGTGTTGCAGATGTTTCTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTCCCCCTACTTGTTCTACCTTAGCTTTCATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCGCAAAATTAACTACCATGAAGTATTGGGACCGATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTTATGGCTCGGAATTTGAGCTTGCCAGTCAGGAAGAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAGAAGCAAATAGAGCATATAGACAAACAAATAGAAACTTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAAACGCAGTCCAATGTTAGACATGAGCAAAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGCTTTTCTCCTACAAAAACTACAAATTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGGAGTTCTGGTTTTATTGTAGAGGCGCAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACTTATAGTCATCATCCCAGAACCCTTACCCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTCACATAAGGAAAGGGAACGAGCCACTAAAGCTTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTGTCTAGAGTGTATCTACTAACTTATGATGCCTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGAATGCTCAACACCGATTTTTAGTAGTCATAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGACTATGCTACATCCAGCTTTTTTCCAAATGCCTTTGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGTTGCAAGAACAACACGCTGAACAAGTTGTAATACCTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGATCGACATGATGCAGCTAACCTACTCGATAAAATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATACTAGGTGAAAAAGCAGCTAGAATCAAATCGGGTACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGACATTACTTTAGTAGTATATCAGATGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGCCTCTACTACTTGTCCAGACAATAATACCCCTCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCGTCCGCGCGGTCAGCGACCGCACATCGGCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCAAGATTTCGTCTGAGCCGATAGCGCAGCCCAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACCCGTTCAGCCCAAATTAACAGATTGTAATTAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGACAGCACTGATTGGTTCTATCGACCATTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAATAGTCTTGGGAATTTTGGGATATTTTTCTCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC

>NC_019729|46|9|4977932-4981722|PILER-CR
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTAAACCCCGCATACAGTGCCATAGCCTTTTTAAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGCTGAGGGCCACAAAATGGGATCAATGCAAATATTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACCACGCCGACGCATGGAAGTTAGCTTATCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTACCGCGTCAGTTGGGCGTGGCTTGAGTTTGAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GATATAGCGTTTACGATGGCTATTGGTACTTCCAGTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAATCGGTATATTTCCCAACCGGGTAGCCCCGGTTTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAAAGCCATGTTGGCGCCGATCGCAACTGTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATGAGGCCCTAAAGCTGAAGGATTGGGCTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACCCCCCTTAAAAAGGGGGGTTTCGGCTGTTAGGGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAGCCGCTCAAGCTCTTGGCTGGCGGGTAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGGGTGAAAAGCTTGAATTCTTCCGAGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCACTCCGGGCCCCTCACACCGGAGATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGGGCGATACCAGCAAGCACCACCATTAATCAAGGTCAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAAAGTCATTGGCGCGGGCGGAAGCGACGCTTCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATATTTTAGCCTGAAACTCGTTGAGAGAAATCAAACAATGTGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTGCTTGTCCATTTATAGCTTAAGTACCCGTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTTACAGAGTTTAAAGCTTGGGCTAGCGCAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGGTGGAAACCTGGGGGGATGAAAATCAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACAAAGCGACTGTTGCTGATGTTCCGAGTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGATGCCTCAAAATCAAATCCTTCCCGTTGTTTGT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAATATCGTGGTTATCAATGCTATAAGGTTTTTCCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATTTCCAAATTGGAGAAAAGTTTACTAGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATTTTGTTCCACATCAGTCTTTGAGAATTGATTCCCGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATGAAGATATTGAATATTACGATCGCCTTGTGATTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATACTGGCAGCCTTCTGGCTGGAGTATTGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACGACAAAGTATCGAATTTCAAATTTAATGGGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAACCCACAGCCCCCACACCAGCCCGCGAGAGCACA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGACCACCGCCGAGGGGAACTGCAACAACTACGCCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAACTGCTGGTGTCCGAATCTGCTCCTACCAACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGCCCAATCCTCCGGCTGTTTCAACAGCACCACAGCCC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGGCTTCCGGGGTGTTCCACTAATTTGAGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGAAATAGAGGTTTTGGTAAACCTCAGCCGGAAACACTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTGGTAATCTGATCTCAATGAATGAAATTAAAGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCAAAAATTACGCAGGCATAATCAGCAAGCTTGCAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAGATAATTATTATATATATACTAAGGGGTCAAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGAACGACAGATAGATCTCAATCAAGACGAAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGCGATTAGTTAGTCAGCCCCACGAGAATTTAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTACGCTGGCAATCCCTTCTACTGTCACCCACACGGCGGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CAGAGCGTAAATTGTGCAATTGCTCGGTAATTCCATAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTGGCTCAGCTCAATTATGAGAGGAGCAATGTAATAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AATAATCATAAAGCCACCACTGAAGAAATTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACGTTGGCAGACCAATTGGTCGCAAAATACAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCGAATTCCGCCAGATTGAATGGCTTTGGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGCCAAAGCAACGCCTGGGAGGTGGTAGAAGGGAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGTACGCGGGGCGCTTGGTGTTATTTTTTTGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGATCGCATCCCTCGACCTCTGGCAACAAATCAAAATAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCACAGCCTTAAGCCCTTCGGGAGTGTGCCGCGACCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATCAGCGACCTTACCCAAAGCCGGCAAAAGGGGAAGAATTCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGGAAAGAGTTTATGCGCCCTCAAAGCGATACTTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGGCGTACAAGTCGAAGTATTTAAATCACTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGATTCGAGCCTCGATACCCTCAGCCCTGGAGTCTCTTGATTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCCCTCAATTCACTCAAGCTCGCACCAAATACAAGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTGTCATCCTTGATGAGTCGGTGTCTGTGATTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGCATTAAGTGATCCTCGTCAAACTGATATATTAGCTAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGTGGTTGTCGTAGTGGAAAGCAGGATCTCGATC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTACCATCTAACTATCAACAACGACATAACCCATCCGTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGAGTTGGTTTGTGGGAGACTACCCGATTTACTGTATCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCTGCGACAGCGGTTGGTGTTTTAGATGTGACAGCACCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTACACAATGTTAAGCTTTTACTCCCCACCATCTGTGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGTCGCCGACCTCCAGCAGTCGCAGGCAGCTTACCAAAAACAGCAGTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGTACTGTTTTGCCAGCTCTGGGTCTACCCAAAACGCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAGTAGAGTCCCGCCAGACTTGCGTGTATTCGATTGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAGCTCATTCCACTTTGGATTGTTGGAGTCCCAAAAATACTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGCTATGGTTGAGGAGTTTATGGGGTCAGAACGTTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGAAAATTGAATAACGGCTTGAGCGCTTTCGAGAAGATG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAATTATGAGTTGGGAAGGGCTTTAATCCCTTCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATTTGTGCGTGTCAAGCGTTTTTATGCGTGTAATTTAGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAAAATCAGGCAAGTACGCATTTCTTGCGTGTGGAAAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATCCAGTCGGACGATGACGCAATTCTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACTTCCTAATTTTCTTCGTTATCATGGTGTTTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTATGAACAGCTTGATTTAATTTGTGTTGCAGATGTTTCTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTCCCCCTACTTGTTCTACCTTAGCTTTCATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCGCAAAATTAACTACCATGAAGTATTGGGACCGATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTTATGGCTCGGAATTTGAGCTTGCCAGTCAGGAAGAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAGAAGCAAATAGAGCATATAGACAAACAAATAGAAACTTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAAACGCAGTCCAATGTTAGACATGAGCAAAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGCTTTTCTCCTACAAAAACTACAAATTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGGAGTTCTGGTTTTATTGTAGAGGCGCAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACTTATAGTCATCATCCCAGAACCCTTACCCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTCACATAAGGAAAGGGAACGAGCCACTAAAGCTTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTGTCTAGAGTGTATCTACTAACTTATGATGCCTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGAATGCTCAACACCGATTTTTAGTAGTCATAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGACTATGCTACATCCAGCTTTTTTCCAAATGCCTTTGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGTTGCAAGAACAACACGCTGAACAAGTTGTAATACCTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGATCGACATGATGCAGCTAACCTACTCGATAAAATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATACTAGGTGAAAAAGCAGCTAGAATCAAATCGGGTACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGACATTACTTTAGTAGTATATCAGATGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGCCTCTACTACTTGTCCAGACAATAATACCCCTCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCGTCCGCGCGGTCAGCGACCGCACATCGGCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCAAGATTTCGTCTGAGCCGATAGCGCAGCCCAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACCCGTTCAGCCCAAATTAACAGATTGTAATTAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGACAGCACTGATTGGTTCTATCGACCATTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAATAGTCTTGGGAATTTTGGGATATTTTTCTCT


>NC_019729|46|10|4981828-4984951|PILER-CR
	ATTAAACCCCGCATACAGTGCCATAGCCTTTTTAAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGCTGAGGGCCACAAAATGGGATCAATGCAAATATTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACCACGCCGACGCATGGAAGTTAGCTTATCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTACCGCGTCAGTTGGGCGTGGCTTGAGTTTGAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GATATAGCGTTTACGATGGCTATTGGTACTTCCAGTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAATCGGTATATTTCCCAACCGGGTAGCCCCGGTTTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAAAGCCATGTTGGCGCCGATCGCAACTGTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATGAGGCCCTAAAGCTGAAGGATTGGGCTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACCCCCCTTAAAAAGGGGGGTTTCGGCTGTTAGGGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCAGCCGCTCAAGCTCTTGGCTGGCGGGTAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGGGTGAAAAGCTTGAATTCTTCCGAGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCACTCCGGGCCCCTCACACCGGAGATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGGGCGATACCAGCAAGCACCACCATTAATCAAGGTCAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAAAGTCATTGGCGCGGGCGGAAGCGACGCTTCCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATATTTTAGCCTGAAACTCGTTGAGAGAAATCAAACAATGTGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTGCTTGTCCATTTATAGCTTAAGTACCCGTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTTACAGAGTTTAAAGCTTGGGCTAGCGCAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGGTGGAAACCTGGGGGGATGAAAATCAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACAAAGCGACTGTTGCTGATGTTCCGAGTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGATGCCTCAAAATCAAATCCTTCCCGTTGTTTGT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAATATCGTGGTTATCAATGCTATAAGGTTTTTCCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATTTCCAAATTGGAGAAAAGTTTACTAGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATTTTGTTCCACATCAGTCTTTGAGAATTGATTCCCGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATGAAGATATTGAATATTACGATCGCCTTGTGATTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATACTGGCAGCCTTCTGGCTGGAGTATTGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACGACAAAGTATCGAATTTCAAATTTAATGGGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAACCCACAGCCCCCACACCAGCCCGCGAGAGCACA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGACCACCGCCGAGGGGAACTGCAACAACTACGCCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAACTGCTGGTGTCCGAATCTGCTCCTACCAACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGCCCAATCCTCCGGCTGTTTCAACAGCACCACAGCCC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGGCTTCCGGGGTGTTCCACTAATTTGAGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAGAAATAGAGGTTTTGGTAAACCTCAGCCGGAAACACTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCTGGTAATCTGATCTCAATGAATGAAATTAAAGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCAAAAATTACGCAGGCATAATCAGCAAGCTTGCAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAGATAATTATTATATATATACTAAGGGGTCAAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGAACGACAGATAGATCTCAATCAAGACGAAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGCGATTAGTTAGTCAGCCCCACGAGAATTTAGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTACGCTGGCAATCCCTTCTACTGTCACCCACACGGCGGCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CAGAGCGTAAATTGTGCAATTGCTCGGTAATTCCATAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTGGCTCAGCTCAATTATGAGAGGAGCAATGTAATAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AATAATCATAAAGCCACCACTGAAGAAATTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGACGTTGGCAGACCAATTGGTCGCAAAATACAATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCGAATTCCGCCAGATTGAATGGCTTTGGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGCCAAAGCAACGCCTGGGAGGTGGTAGAAGGGAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGTACGCGGGGCGCTTGGTGTTATTTTTTTGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGATCGCATCCCTCGACCTCTGGCAACAAATCAAAATAGC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCACAGCCTTAAGCCCTTCGGGAGTGTGCCGCGACCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATCAGCGACCTTACCCAAAGCCGGCAAAAGGGGAAGAATTCGG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGGAAAGAGTTTATGCGCCCTCAAAGCGATACTTGCG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGGCGTACAAGTCGAAGTATTTAAATCACTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGATTCGAGCCTCGATACCCTCAGCCCTGGAGTCTCTTGATTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCCCCTCAATTCACTCAAGCTCGCACCAAATACAAGGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGCCTGTCATCCTTGATGAGTCGGTGTCTGTGATTAGTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGCATTAAGTGATCCTCGTCAAACTGATATATTAGCTAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGTGGTTGTCGTAGTGGAAAGCAGGATCTCGATC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTACCATCTAACTATCAACAACGACATAACCCATCCGTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGAGTTGGTTTGTGGGAGACTACCCGATTTACTGTATCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCTGCGACAGCGGTTGGTGTTTTAGATGTGACAGCACCTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTACACAATGTTAAGCTTTTACTCCCCACCATCTGTGCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGTCGCCGACCTCCAGCAGTCGCAGGCAGCTTACCAAAAACAGCAGTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CGTACTGTTTTGCCAGCTCTGGGTCTACCCAAAACGCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAGTAGAGTCCCGCCAGACTTGCGTGTATTCGATTGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAGCTCATTCCACTTTGGATTGTTGGAGTCCCAAAAATACTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGGCTATGGTTGAGGAGTTTATGGGGTCAGAACGTTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GGAAAATTGAATAACGGCTTGAGCGCTTTCGAGAAGATG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TGAAATTATGAGTTGGGAAGGGCTTTAATCCCTTCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTATTTGTGCGTGTCAAGCGTTTTTATGCGTGTAATTTAGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTAAAATCAGGCAAGTACGCATTTCTTGCGTGTGGAAAT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTATCCAGTCGGACGATGACGCAATTCTATGAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CCGCCACTTCCTAATTTTCTTCGTTATCATGGTGTTTC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTTATGAACAGCTTGATTTAATTTGTGTTGCAGATGTTTCTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTTCCCCCTACTTGTTCTACCTTAGCTTTCATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCGCAAAATTAACTACCATGAAGTATTGGGACCGATT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTTATGGCTCGGAATTTGAGCTTGCCAGTCAGGAAGAAC
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAAGAAGCAAATAGAGCATATAGACAAACAAATAGAAACTTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAAAAACGCAGTCCAATGTTAGACATGAGCAAAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AAATGCTTTTCTCCTACAAAAACTACAAATTTA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCGGGAGTTCTGGTTTTATTGTAGAGGCGCAATTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	CTACTTATAGTCATCATCCCAGAACCCTTACCCCATA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AGTCACATAAGGAAAGGGAACGAGCCACTAAAGCTTAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATTGTCTAGAGTGTATCTACTAACTTATGATGCCTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TCTAGAATGCTCAACACCGATTTTTAGTAGTCATAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GTGACTATGCTACATCCAGCTTTTTTCCAAATGCCTTTGTTT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ACGTTGCAAGAACAACACGCTGAACAAGTTGTAATACCTCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGATCGACATGATGCAGCTAACCTACTCGATAAAATGGTG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	ATAATACTAGGTGAAAAAGCAGCTAGAATCAAATCGGGTACAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGAGACATTACTTTAGTAGTATATCAGATGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAGCCTCTACTACTTGTCCAGACAATAATACCCCTCCA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TATCGTCCGCGCGGTCAGCGACCGCACATCGGCAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	GCAAGATTTCGTCTGAGCCGATAGCGCAGCCCAGA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	AACCCGTTCAGCCCAAATTAACAGATTGTAATTAAA
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TTGACAGCACTGATTGGTTCTATCGACCATTGAG
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC	TAATAGTCTTGGGAATTTTGGGATATTTTTCTCT
GTTTCAATCCCTAATAGGGTTTTAGTTTGATTGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177764.1\|4970066_4970705_+\|ceramidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|368648
NC_019729.1\|WP_015177763.1\|4968355_4969810_-\|DUF512-domain-containing-protein	unknown	unknown	gnl\|CDD\|132322
NC_019729.1\|WP_015177777.1\|4992179_4992566_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NC_019729.1\|WP_015177776.1\|4991278_4991950_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NC_019729.1\|WP_015177779.1\|4993799_4994837_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NC_019729.1\|WP_015177766.1\|4973388_4973871_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177771.1\|4985312_4986374_+\|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|223906
NC_019729.1\|WP_015177760.1\|4965466_4965580_-\|photosystem-II-reaction-center-protein-M	unknown	unknown	gnl\|CDD\|235328
NC_019729.1\|WP_015177780.1\|4994982_4996275_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_019729.1\|WP_015177769.1\|4976094_4976706_+\|thylakoid-membrane-photosystem-I-accumulation-factor	unknown	unknown	gnl\|CDD\|379034
NC_019729.1\|WP_015177765.1\|4970743_4973302_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224142
NC_019729.1\|WP_015177774.1\|4989298_4989505_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_083888242.1\|4987424_4989002_+\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_019729.1\|WP_015177775.1\|4989843_4990788_+\|UV-DNA-damage-repair-endonuclease-UvsE	unknown	unknown	gnl\|CDD\|235029
NC_019729.1\|WP_015177762.1\|4966321_4968214_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_019729.1\|WP_015177767.1\|4973895_4974666_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_015177772.1\|4986450_4987035_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015177768.1\|4974870_4975773_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NC_019729.1\|WP_015177761.1\|4965875_4966172_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223706
NC_019729.1\|WP_015177778.1\|4992686_4993304_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341393

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177764.1\|4970066_4970705_+\|ceramidase-domain-containing-protein	gnl\|CDD\|368648	pfam05875, Ceramidase, Ceramidase. This family consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates, EC:3.5.1.23. This family belongs to the CREST superfamily, which are distantly related to the GPCRs.	2.672e-05
NC_019729.1\|WP_015177763.1\|4968355_4969810_-\|DUF512-domain-containing-protein	gnl\|CDD\|132322	TIGR03279, cyano_FeS_chp, putative radical SAM enzyme, TIGR03279 family. Members of this protein family are predicted radical SAM enzymes of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.	0
NC_019729.1\|WP_015177777.1\|4992179_4992566_+\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.17904e-41
NC_019729.1\|WP_015177776.1\|4991278_4991950_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	3.57405e-123
NC_019729.1\|WP_015177779.1\|4993799_4994837_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NC_019729.1\|WP_015177771.1\|4985312_4986374_+\|mannose-1-phosphate-guanylyltransferase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.66718e-143
NC_019729.1\|WP_015177760.1\|4965466_4965580_-\|photosystem-II-reaction-center-protein-M	gnl\|CDD\|235328	PRK04989, psbM, photosystem II reaction center protein M; Provisional.	3.72764e-15
NC_019729.1\|WP_015177780.1\|4994982_4996275_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NC_019729.1\|WP_015177769.1\|4976094_4976706_+\|thylakoid-membrane-photosystem-I-accumulation-factor	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	1.88678e-08
NC_019729.1\|WP_015177765.1\|4970743_4973302_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|224142	COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	3.58139e-59
NC_019729.1\|WP_083888242.1\|4987424_4989002_+\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	2.27224e-147
NC_019729.1\|WP_015177775.1\|4989843_4990788_+\|UV-DNA-damage-repair-endonuclease-UvsE	gnl\|CDD\|235029	PRK02308, uvsE, putative UV damage endonuclease; Provisional.	1.92512e-107
NC_019729.1\|WP_015177762.1\|4966321_4968214_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.24422e-62
NC_019729.1\|WP_015177767.1\|4973895_4974666_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.2411e-31
NC_019729.1\|WP_015177772.1\|4986450_4987035_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.31514e-51
NC_019729.1\|WP_015177768.1\|4974870_4975773_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.28175e-93
NC_019729.1\|WP_015177761.1\|4965875_4966172_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|223706	COG0633, Fdx, Ferredoxin [Energy production and conversion].	4.62439e-18
NC_019729.1\|WP_015177778.1\|4992686_4993304_-\|CBS-domain-containing-protein	gnl\|CDD\|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.58694e-54

>NC_019729.1|WP_015177769.1|4976094_4976706_+|thylakoid-membrane-photosystem-I-accumulation-factor
MIFPENKNSLVTAASGIRWLRRILSASLLTVAIALSFILLSGTAPALATLTDDRFDGTIFALYAGNGSLVPPKVKIADSFKRHKPVLLVFYTDDSSDSKQYAIVVSQLQEFYGREADFIPVTIDSLPPEPSPEITEPSHYYEGFVPQTVILDQSGKVVFNEKGQIPFEQVDDAFRKVFDLLPREQSIPLKRRIVNELNVELSK
>NC_019729.1|WP_015177768.1|4974870_4975773_-|undecaprenyl-diphosphate-phosphatase
MIALLDALLAQTPAADVSGQTQINLVQAIVLGIVQGLTEFLPISSSAHLKVVPIALGWGDPGVAYTAVIQLGSIVAVLWYFWKDLTTITFGAVDAVVRRDYNSQEFRIALGIALGTIPVVFFGLLIKILVPDFDKSPLRSLGAIAIASIVMSLLLAIAEKIGKRNRTYEKLTVQDGILMGLAQAMALIPGCSRSGSTLTAGLLIGLERPAAARFSFLLGIPAITLAGLVELKGALGEGVGDAGVAALIVGTISAFVFSYLSIAWLMKFLQTQNTWVFVWYRLAFGVAILTAIAGGAVKNI
>NC_019729.1|WP_015177767.1|4973895_4974666_-|class-I-SAM-dependent-methyltransferase
MTAHQESIIDQFTRQAIPFSNLYAHTNQESLDLLMKMASVSDKDTVLDVACGPGIVSCAFAEVASHVTGIDLTPAMIAQAQILAQQKNLTNLSWQQGDIETLPFADDSFSIVLSRYAFHHFLRPDVVLSEMVRVCRPGGRILIADVAMPPDKVDTYNYIEKIRDPSHTRALTLEELPKLVADANLQNIKLAFYKVELELEQQLAASFPNPGDDNKLRQIFREDIGVDSLGVGAHERGNEIHYAVPIAVIVGEKAKL
>NC_019729.1|WP_015177766.1|4973388_4973871_-|hypothetical-protein
MPIAIQVLLLIPTMDEEAFIWLIRRQATNTQAESGCGHLHVAVEHAEQPGSVLVILTDRPHPQGWSQTNCEFIPVKPADGLPQEVKVWQMVSTQEVKPVRPSDVAQWIRQAVRLGWQPRLPGITFNVQIAGGRAKNILERGVSIGYAEDRKLTPHSNSKC
>NC_019729.1|WP_015177765.1|4970743_4973302_-|sigma-54-interacting-transcriptional-regulator
MSTETLVNWLESSTELGILSREILQAIAGEMEMSTYPPGFRVVIEDTPITHLYILERGQADRYRRKQPGLMWGSSLLPGAIVNLSALQRSQPADSRIITRTECQFWVISADRWRNLLERYPRITEAYAQRLAAKLEQLEAEIAYERERQNALRSYLVPRAKRGVIGNSRYAVKLRQQVRAASSDGRSVLISGEPGLEKDNLAALIHFGSHRRNEPIIQIKSALLQANGAELFGRLGGKPGLLEWLGEGTLILNDVQELPAQLCPQIQQLLTDGTYTLVVKEGQIPPPPRSSNARIILISEMVLPQLDKLAQHKIKVPSLRVRKADLEAQVNYYLNIFSRQKKLVRPQVTPEAIRRLQAYDFPGNLQELQGMVDRALVQAQGSQVLTEEVFWAQAAKQQKFRLNLLKIYPKFRQFLRSDWYPDRVNYWFTTWVFAVVVITLFVAPQDRQHNFALNIFWAWWWPLILLLFPIIGRLWCAFCPFMIYGEIVQKLSLKIFPRTLNKWPRQQAEKWGGWFLFGLFTLIFLWEELWNLENTAYLSSCLLLLITAGAVIFSLIFERRFWCRYLCPIGGMNGLFAKLSIIELRAQQGTCGAECSTYQCYKGGPGLGEGLTTNGCPIYSHPAQLTDNKDCVLCMTCLKACPHRSVELNLRPPGIELWTTHVPHSYEIALLFLLLGGIYLHRLPEINSLLGLGINLEEFLPHLGLSIAVLIIPPMIPLIAYAIIQAIYRLGQAETVPFTTYKPLSFVSLAYGYLPLVWGGSLAHYWRLGLQEGGRVIPVTFATFGQIRDDLPSFIGDPAVISFLQGLTLIVSLLVTILVTQKIAKRSIKSLIPQHLASLCLMVSLWYAIVGT
>NC_019729.1|WP_015177764.1|4970066_4970705_+|ceramidase-domain-containing-protein
MNEYIDLYCERLIPGLWSEPLNAISNVSFIIAAWAIWQLAQRHHKISPGIWILIALATSIGIGSFLFHTFATRWANLLDVIPILLFQLCFIWLYSRRVVRMNSGYAGVLLAAFFFVSDFSKQFTNLLNGSLSYAPAFLVLLGLGVYHYRQQKREPFIILAATGVFLLALAFRTLDRAICPFFSPGTHFLWHLFNGVLLYLSARSLLLNWSEE
>NC_019729.1|WP_015177763.1|4968355_4969810_-|DUF512-domain-containing-protein
MSESSIKPALITKVIPDSICAEMGFEPGDSIVAVNGQKPRDLIDYQFLCADEFLELEVLDSKGKTHKLEIDKEYDEDLGLEFETALFDGLIQCNNRCPFCFIDQQPPGKRETLYLKDDDYRLSFLYGSYLTLTNLNQKEWERIEQMRLSPLYVSVHATEPEVRIRLLKNLRAGKILEQIKWFQERRLQIHAQVVVCPGINDGEHLERTLLDLAKFHAGNIPAVASVAVVPVGLTRFRPPEDELIAVTAEKAREVIEQVQKIQVLLSTGKGGGKAKKQNSKSTPPNPPLLRGGEDLNGLLGRSKSRCIWLADEWFLIAGLDLPSAADYEDYPQIGNGVGSIRQFIQQFETAFEKLQPMPVNPPRKLVWVVGNAVEKAFEPIVQQLNQIPGLSVNMAALCSRYWGQTITVTGLLTGQDLLEALQGRDLGDGILLPSVMLKQGEPRFLDDMTLEQLASSLKTRILPVSGVEELISAAIGLANAEVKF
>NC_019729.1|WP_015177762.1|4966321_4968214_-|TolC-family-protein
MRVFRQIIVVGVGAAITLGNAAQSASAQSPAESQDSLALSNQLELGQNVRSTSNTAAESASQPEQSIALNPQTSESQQPGGGNIASTPPTGPEQASKPQQAAPASPSTLSQAGATPLRGLEPTQTQQPSPSPLNNVPVPSSPVPILRGTPNESFPPLPPKGILDTKPPASLEPNPNPLLFPTNPEDVRIEQTEPITLQQAIDLARRNSQVLQIAGQQVEQSRSALREQQAALYPDLNFQMDASRSVTAGGELGIRARQRQFNFEASRGQPAREAGPNFGSNSLNSTLQLNYDVDLFGRRRANIRAAEEQLRLRELDVERQAEELRFDTAEAYYNLQNADGQVAIRQASVRNAQQSLRDAEALERAGVGTRFAVLQAQANLANEVQQLSVARRDQRVAQRRLAEILNISQSANLTAADPVEQAGSWRLSLEESIVQAFKNRPELEQQLVQRDISKQQRRSIQAGRLPQLSVGGSYNVLGIDPDDPARFATRGWADGYSIRASLTWSIFDGGAANARVRQRDADIAIAESRFDQLRNQVRREVEQAYFGLESSFENIETSEAGVLQSREALRLARLRFQAGVGTQTDVIQAETDLTRAERNRLSAIVTYNLGLSSLQRAVSNLPTNNLSDAP
>NC_019729.1|WP_015177761.1|4965875_4966172_-|(2Fe-2S)-binding-protein
MANIKFVKENKEVIAADGANLRLKALENRIDLYTFSGKMMNCGGYGQCGTCIVEIVEGSENLSPRTDFENRKLKKKPENYRLACQATVNGPVSVKTKP
>NC_019729.1|WP_015177760.1|4965466_4965580_-|photosystem-II-reaction-center-protein-M
MEVNDLGFVATILFVLVPSVFLIILYIQTASRQGRKD
>NC_019729.1|WP_015177771.1|4985312_4986374_+|mannose-1-phosphate-guanylyltransferase
MTKTLIPVILAGGKGERFWPLSRKQRPKQFLSLDGSGKSLLQATAERLLTLGNGWDDLWVVTSEMLAAGVREQLPLLPPENLLAEPEGRDTAPAVAWTAIETAKRYGEDAVVGFFPADHWIGEPEEFVKTLEAAADLARNQDAIATLGVKPSYASTGYGYIEQGEEIGSFGGFPAYRVARFTEKPDRTTAEEFVASGKFSWNGGIFVFRVGTVLTELRNHVPEMMAALEAKGAQAYSELPKISIDYALMEKTQKACVLPVGFSWDDLGDWNAIGRLLQGDKPNVDLAKHVGIDTKGGIFYAADENEVIVTIGLEDVVVVRDGNVTLIVKKDRTQEIKQVIKVLGEDENLKDLL
>NC_019729.1|WP_015177772.1|4986450_4987035_-|Uma2-family-endonuclease
MIAIQFPTNSIELSINLTDEQFFELCQHNRDYQFERTASGELIIMPPTGSETSRRNADLTSQLRVWNRETKLGVVFDSSGGFKLPNGADRSPDASWVKKERWDALTPEQKDSFAPLCPDFVVELRSRTDSLKKLQEKMQEYIDNGARLGWLIDRQNQRVEIYRPGQDVEIIQNPRTLSGEEVLPGFVLDLAEIM
>NC_019729.1|WP_083888242.1|4987424_4989002_+|AarF/ABC1/UbiB-kinase-family-protein
MKRLLTGSKTDAPSLPTPAVLRNILVELGPVFVKLGQLLSTRPDLLPATYIETLSTLQAEVPPVPWSQVEAIVRLELTQSLEDTFAKFNTEAIAAGSIAQTHKATLKDGREVALKVQRPGIEIVIEQDIAVLRGLAELVMLTDFGQQYDIVALAEEFAIALRAELDFIQEANYTDELRRNLSKSRWFDPTKVVLPEINWELTTKKLLVMEWLNGVPILLGDLQGIRHQGDINAEREEITTLLCRVFFQQLYIDGFFHADPHPGNLFYLKDGRIALLDCGMVGRLDPRTQQNLTEMLLSIVDLDAQRCAQLTLEMAEFAQPTSLVNLENDLARMLRKYYNVSLSQMNLSEIFYEVLEITRKNKIRLPSNLGLYAKTLANLEGLARSFNPRFNIVEQVKPLMTDMFRRQLLGDDPVQALLRTALDLKSLSLQSPRQVEVLLDRVTSETLKWNLTLKELDPLRRTLGDSANRLSFSIVVGSLIIGAAIISSNAQTAQLSFLSTGLFGAASFLGFWLIISILRSGRLRS
>NC_019729.1|WP_015177774.1|4989298_4989505_+|hypothetical-protein
MSSGHASHKSSSTKPNTNTNGQITSPDDQPADPLNQETSGYPFHNEAMENPVATARPDEEAESGEEQQ
>NC_019729.1|WP_015177775.1|4989843_4990788_+|UV-DNA-damage-repair-endonuclease-UvsE
MSEINQLFHKDKLPELGLVCITTSDAVRFRTVTRKRLLQLSETEQETVLRELYADNLKRLDKAIDFCSVNHIKLYRMTSALFPFADTDLGEAVLHSMTEELRTTGDRALSLGIRLVLHPDQFVVLSSDKLSVVENSIKILATHALILDMLEQPRSPQALMNIHGGKGDRTSQLKSVIRDLPESIRSRLTFENDEYAYSSSEILEVCLDTGVPMVFDAHHHVIHEHLETYDDPSVAEMLAAARTTWSVPEWQLVHISNGKDFFADPRHSDLITEMPNCYYQAPWIEVEAKFKELAIEKLRAEWLCANVLQFSSVS
>NC_019729.1|WP_015177776.1|4991278_4991950_+|SOS-response-associated-peptidase
MCGRYTLTTSGEIIAEFFKLSAVPDIKPRYNIAPTQSVATVTVEPQKMQRQFQFMRWGLIPSWAKDMKIGSRMINARSETVAEKPAFRSAIKHRRCLIVADGFYEWQQQGKNKQPYYFQKADGEPFAFAGLWENWESPEKENIVSCSIITTAANETVQPMHDRMPVILPDSDWEQWLDPSVKNAREVLPLLKPYASEAMKAKAVSAIVNSPSRDTPECISDRQ
>NC_019729.1|WP_015177777.1|4992179_4992566_+|VOC-family-protein
MIGYVTLGTNDIESAAKFYDALLAEIGARRFMEFEGFIAWSVSPDRPALAITKPFDGNRATVGNGVMIALQVDSPEKVNLVYNKAIELGAQDEGAAGPRGVLPGFYAGYFRDLDGNKLNVFCMMGPNT
>NC_019729.1|WP_015177778.1|4992686_4993304_-|CBS-domain-containing-protein
MMMKAQDIMTTEVVTIRGSATVAEAVAMMNDLCLRALIVERRHEQDAYGIVTETDIVYKVAAYGVDPKKVRVFEIMTKPCITVNPDLGVEYVARLFANTRIRRAPVIKDELVGIISVTDILTKSDFLEKPKSVLFDEAIEQAIADARTICAEKGVTSRECAVAWDIVEEMQAEASHQRAMKLEKTAFDEYCEENPEAAEARMYES
>NC_019729.1|WP_015177779.1|4993799_4994837_+|class-II-fructose-bisphosphatase
MDNVIGLEIIEVVEQAAIASARLMGKGEKDEADRVAVEAMRERMNKIHMRGRIVIGEGERDDAPMLYIGEQVGICTREDAHTFCNPDELVEIDIAVDPCEGTNLVAYGQNGSMAVLAISEKGGLFAAPDFYMNKLAAPAAAKNHVDIRKTPTQNLKIISDCLGRSIEDLVVVVMDRPRHKDLINEIRGAGARVRLISDGDVSAAISCAFSGSNIHALMGIGAAPEGVISAAAMRCLGGHFQGQLIYDPAVVKTGLIGESKESNIARLKEMGITDPDKIYNAEELASGETVLFAACGITPGTLMDGVRFFGGGARTESLVISSQSKTARFVDTIHMFDHPKALQLN
>NC_019729.1|WP_015177780.1|4994982_4996275_+|glutamyl-tRNA-reductase
MNIAVVGLSHKTAPVEVREKLSIPEQKVEAAIAQLRGYPHIQEVAILSTCNRLEIYIVTSESEPGVREVIQFLSECSKVYVQSLRPHLFILLHEDAVMHLMRVASGLDSLVLGEGQILAQVKQTHKLAQQYKGVGRILERLFKQALTAGKRVRTETSIGTGAVSISSAAAELAQMKGQNLASSKIAIIGAGKMSRLLVQHLLSKGASHISIVNRSVRGALELAGQFKDAQLHLYQLSEMMQVIASSDLVFTSTAATDPLLNKAKLEAVLDPNRPLMLVDISVPRNIDSDANELANVRSFNVDDLKAVVAQNHESRRKMAMEAQGLLEQEVEAFDLWWRSLETVPTISCLRDKIELIREQELEKALSRLGSEFSEKHQDVIESLTRGIVNKILHDPMVQLRAQQDIEARRQAMQTLQTLFNLDVDVNQQYS

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Crispr_ID: NC_019729_47

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_47

4990863-4991025

Orphan

Consensus_repeat	Method
AAGAACAGGCTTTCCGGCCTGTTCCACAAAAAATGAATTTTATTGTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_47

>merge|NC_019729|47|4990863-4991025|CRISPRCasFinder
AAGAACAGGCTTTCCGGCCTGTTCCACAAAAAATGAATTTTATTGTGGGGTGGGCGTCTCGCCCGCCCGGTTTATTGTGACAGTCCGAGAGGGTTTTTAACGGTAAATCCTAAGAACAGGCTTTCCGGCCTGTTCCACAAAGAATGAATTTTATTGTGGGGTG

>NC_019729|47|46|4990863-4991025|CRISPRCasFinder
AAGAACAGGCTTTCCGGCCTGTTCCACAAAAAATGAATTTTATTGTGGGGTG	GGCGTCTCGCCCGCCCGGTTTATTGTGACAGTCCGAGAGGGTTTTTAACGGTAAATCCT
AAGAACAGGCTTTCCGGCCTGTTCCACAAAGAATGAATTTTATTGTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177783.1\|5000573_5001524_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350277
NC_019729.1\|WP_015177781.1\|4996526_4999547_+\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|235047
NC_019729.1\|WP_015177777.1\|4992179_4992566_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NC_019729.1\|WP_015177784.1\|5001764_5003393_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
NC_019729.1\|WP_015177776.1\|4991278_4991950_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NC_019729.1\|WP_015177779.1\|4993799_4994837_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NC_019729.1\|WP_015177766.1\|4973388_4973871_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177771.1\|4985312_4986374_+\|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|223906
NC_019729.1\|WP_190274243.1\|5003515_5003680_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177780.1\|4994982_4996275_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_019729.1\|WP_015177769.1\|4976094_4976706_+\|thylakoid-membrane-photosystem-I-accumulation-factor	unknown	unknown	gnl\|CDD\|379034
NC_019729.1\|WP_015177782.1\|4999676_5000345_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177765.1\|4970743_4973302_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224142
NC_019729.1\|WP_083888242.1\|4987424_4989002_+\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_019729.1\|WP_015177775.1\|4989843_4990788_+\|UV-DNA-damage-repair-endonuclease-UvsE	unknown	unknown	gnl\|CDD\|235029
NC_019729.1\|WP_015177772.1\|4986450_4987035_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015177767.1\|4973895_4974666_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_015177768.1\|4974870_4975773_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NC_019729.1\|WP_015177774.1\|4989298_4989505_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177778.1\|4992686_4993304_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341393

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177783.1\|5000573_5001524_-\|hypothetical-protein	gnl\|CDD\|350277	cd18710, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_4-2.	3.2394e-65
NC_019729.1\|WP_015177781.1\|4996526_4999547_+\|UPF0182-family-protein	gnl\|CDD\|235047	PRK02509, PRK02509, hypothetical protein; Provisional.	0
NC_019729.1\|WP_015177777.1\|4992179_4992566_+\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.17904e-41
NC_019729.1\|WP_015177784.1\|5001764_5003393_-\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	5.21752e-42
NC_019729.1\|WP_015177776.1\|4991278_4991950_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	3.57405e-123
NC_019729.1\|WP_015177779.1\|4993799_4994837_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NC_019729.1\|WP_015177771.1\|4985312_4986374_+\|mannose-1-phosphate-guanylyltransferase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.66718e-143
NC_019729.1\|WP_015177780.1\|4994982_4996275_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NC_019729.1\|WP_015177769.1\|4976094_4976706_+\|thylakoid-membrane-photosystem-I-accumulation-factor	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	1.88678e-08
NC_019729.1\|WP_015177765.1\|4970743_4973302_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|224142	COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	3.58139e-59
NC_019729.1\|WP_083888242.1\|4987424_4989002_+\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	2.27224e-147
NC_019729.1\|WP_015177775.1\|4989843_4990788_+\|UV-DNA-damage-repair-endonuclease-UvsE	gnl\|CDD\|235029	PRK02308, uvsE, putative UV damage endonuclease; Provisional.	1.92512e-107
NC_019729.1\|WP_015177772.1\|4986450_4987035_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.31514e-51
NC_019729.1\|WP_015177767.1\|4973895_4974666_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.2411e-31
NC_019729.1\|WP_015177768.1\|4974870_4975773_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.28175e-93
NC_019729.1\|WP_015177778.1\|4992686_4993304_-\|CBS-domain-containing-protein	gnl\|CDD\|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.58694e-54

>NC_019729.1|WP_015177775.1|4989843_4990788_+|UV-DNA-damage-repair-endonuclease-UvsE
MSEINQLFHKDKLPELGLVCITTSDAVRFRTVTRKRLLQLSETEQETVLRELYADNLKRLDKAIDFCSVNHIKLYRMTSALFPFADTDLGEAVLHSMTEELRTTGDRALSLGIRLVLHPDQFVVLSSDKLSVVENSIKILATHALILDMLEQPRSPQALMNIHGGKGDRTSQLKSVIRDLPESIRSRLTFENDEYAYSSSEILEVCLDTGVPMVFDAHHHVIHEHLETYDDPSVAEMLAAARTTWSVPEWQLVHISNGKDFFADPRHSDLITEMPNCYYQAPWIEVEAKFKELAIEKLRAEWLCANVLQFSSVS
>NC_019729.1|WP_015177774.1|4989298_4989505_+|hypothetical-protein
MSSGHASHKSSSTKPNTNTNGQITSPDDQPADPLNQETSGYPFHNEAMENPVATARPDEEAESGEEQQ
>NC_019729.1|WP_083888242.1|4987424_4989002_+|AarF/ABC1/UbiB-kinase-family-protein
MKRLLTGSKTDAPSLPTPAVLRNILVELGPVFVKLGQLLSTRPDLLPATYIETLSTLQAEVPPVPWSQVEAIVRLELTQSLEDTFAKFNTEAIAAGSIAQTHKATLKDGREVALKVQRPGIEIVIEQDIAVLRGLAELVMLTDFGQQYDIVALAEEFAIALRAELDFIQEANYTDELRRNLSKSRWFDPTKVVLPEINWELTTKKLLVMEWLNGVPILLGDLQGIRHQGDINAEREEITTLLCRVFFQQLYIDGFFHADPHPGNLFYLKDGRIALLDCGMVGRLDPRTQQNLTEMLLSIVDLDAQRCAQLTLEMAEFAQPTSLVNLENDLARMLRKYYNVSLSQMNLSEIFYEVLEITRKNKIRLPSNLGLYAKTLANLEGLARSFNPRFNIVEQVKPLMTDMFRRQLLGDDPVQALLRTALDLKSLSLQSPRQVEVLLDRVTSETLKWNLTLKELDPLRRTLGDSANRLSFSIVVGSLIIGAAIISSNAQTAQLSFLSTGLFGAASFLGFWLIISILRSGRLRS
>NC_019729.1|WP_015177772.1|4986450_4987035_-|Uma2-family-endonuclease
MIAIQFPTNSIELSINLTDEQFFELCQHNRDYQFERTASGELIIMPPTGSETSRRNADLTSQLRVWNRETKLGVVFDSSGGFKLPNGADRSPDASWVKKERWDALTPEQKDSFAPLCPDFVVELRSRTDSLKKLQEKMQEYIDNGARLGWLIDRQNQRVEIYRPGQDVEIIQNPRTLSGEEVLPGFVLDLAEIM
>NC_019729.1|WP_015177771.1|4985312_4986374_+|mannose-1-phosphate-guanylyltransferase
MTKTLIPVILAGGKGERFWPLSRKQRPKQFLSLDGSGKSLLQATAERLLTLGNGWDDLWVVTSEMLAAGVREQLPLLPPENLLAEPEGRDTAPAVAWTAIETAKRYGEDAVVGFFPADHWIGEPEEFVKTLEAAADLARNQDAIATLGVKPSYASTGYGYIEQGEEIGSFGGFPAYRVARFTEKPDRTTAEEFVASGKFSWNGGIFVFRVGTVLTELRNHVPEMMAALEAKGAQAYSELPKISIDYALMEKTQKACVLPVGFSWDDLGDWNAIGRLLQGDKPNVDLAKHVGIDTKGGIFYAADENEVIVTIGLEDVVVVRDGNVTLIVKKDRTQEIKQVIKVLGEDENLKDLL
>NC_019729.1|WP_015177769.1|4976094_4976706_+|thylakoid-membrane-photosystem-I-accumulation-factor
MIFPENKNSLVTAASGIRWLRRILSASLLTVAIALSFILLSGTAPALATLTDDRFDGTIFALYAGNGSLVPPKVKIADSFKRHKPVLLVFYTDDSSDSKQYAIVVSQLQEFYGREADFIPVTIDSLPPEPSPEITEPSHYYEGFVPQTVILDQSGKVVFNEKGQIPFEQVDDAFRKVFDLLPREQSIPLKRRIVNELNVELSK
>NC_019729.1|WP_015177768.1|4974870_4975773_-|undecaprenyl-diphosphate-phosphatase
MIALLDALLAQTPAADVSGQTQINLVQAIVLGIVQGLTEFLPISSSAHLKVVPIALGWGDPGVAYTAVIQLGSIVAVLWYFWKDLTTITFGAVDAVVRRDYNSQEFRIALGIALGTIPVVFFGLLIKILVPDFDKSPLRSLGAIAIASIVMSLLLAIAEKIGKRNRTYEKLTVQDGILMGLAQAMALIPGCSRSGSTLTAGLLIGLERPAAARFSFLLGIPAITLAGLVELKGALGEGVGDAGVAALIVGTISAFVFSYLSIAWLMKFLQTQNTWVFVWYRLAFGVAILTAIAGGAVKNI
>NC_019729.1|WP_015177767.1|4973895_4974666_-|class-I-SAM-dependent-methyltransferase
MTAHQESIIDQFTRQAIPFSNLYAHTNQESLDLLMKMASVSDKDTVLDVACGPGIVSCAFAEVASHVTGIDLTPAMIAQAQILAQQKNLTNLSWQQGDIETLPFADDSFSIVLSRYAFHHFLRPDVVLSEMVRVCRPGGRILIADVAMPPDKVDTYNYIEKIRDPSHTRALTLEELPKLVADANLQNIKLAFYKVELELEQQLAASFPNPGDDNKLRQIFREDIGVDSLGVGAHERGNEIHYAVPIAVIVGEKAKL
>NC_019729.1|WP_015177766.1|4973388_4973871_-|hypothetical-protein
MPIAIQVLLLIPTMDEEAFIWLIRRQATNTQAESGCGHLHVAVEHAEQPGSVLVILTDRPHPQGWSQTNCEFIPVKPADGLPQEVKVWQMVSTQEVKPVRPSDVAQWIRQAVRLGWQPRLPGITFNVQIAGGRAKNILERGVSIGYAEDRKLTPHSNSKC
>NC_019729.1|WP_015177765.1|4970743_4973302_-|sigma-54-interacting-transcriptional-regulator
MSTETLVNWLESSTELGILSREILQAIAGEMEMSTYPPGFRVVIEDTPITHLYILERGQADRYRRKQPGLMWGSSLLPGAIVNLSALQRSQPADSRIITRTECQFWVISADRWRNLLERYPRITEAYAQRLAAKLEQLEAEIAYERERQNALRSYLVPRAKRGVIGNSRYAVKLRQQVRAASSDGRSVLISGEPGLEKDNLAALIHFGSHRRNEPIIQIKSALLQANGAELFGRLGGKPGLLEWLGEGTLILNDVQELPAQLCPQIQQLLTDGTYTLVVKEGQIPPPPRSSNARIILISEMVLPQLDKLAQHKIKVPSLRVRKADLEAQVNYYLNIFSRQKKLVRPQVTPEAIRRLQAYDFPGNLQELQGMVDRALVQAQGSQVLTEEVFWAQAAKQQKFRLNLLKIYPKFRQFLRSDWYPDRVNYWFTTWVFAVVVITLFVAPQDRQHNFALNIFWAWWWPLILLLFPIIGRLWCAFCPFMIYGEIVQKLSLKIFPRTLNKWPRQQAEKWGGWFLFGLFTLIFLWEELWNLENTAYLSSCLLLLITAGAVIFSLIFERRFWCRYLCPIGGMNGLFAKLSIIELRAQQGTCGAECSTYQCYKGGPGLGEGLTTNGCPIYSHPAQLTDNKDCVLCMTCLKACPHRSVELNLRPPGIELWTTHVPHSYEIALLFLLLGGIYLHRLPEINSLLGLGINLEEFLPHLGLSIAVLIIPPMIPLIAYAIIQAIYRLGQAETVPFTTYKPLSFVSLAYGYLPLVWGGSLAHYWRLGLQEGGRVIPVTFATFGQIRDDLPSFIGDPAVISFLQGLTLIVSLLVTILVTQKIAKRSIKSLIPQHLASLCLMVSLWYAIVGT
>NC_019729.1|WP_015177776.1|4991278_4991950_+|SOS-response-associated-peptidase
MCGRYTLTTSGEIIAEFFKLSAVPDIKPRYNIAPTQSVATVTVEPQKMQRQFQFMRWGLIPSWAKDMKIGSRMINARSETVAEKPAFRSAIKHRRCLIVADGFYEWQQQGKNKQPYYFQKADGEPFAFAGLWENWESPEKENIVSCSIITTAANETVQPMHDRMPVILPDSDWEQWLDPSVKNAREVLPLLKPYASEAMKAKAVSAIVNSPSRDTPECISDRQ
>NC_019729.1|WP_015177777.1|4992179_4992566_+|VOC-family-protein
MIGYVTLGTNDIESAAKFYDALLAEIGARRFMEFEGFIAWSVSPDRPALAITKPFDGNRATVGNGVMIALQVDSPEKVNLVYNKAIELGAQDEGAAGPRGVLPGFYAGYFRDLDGNKLNVFCMMGPNT
>NC_019729.1|WP_015177778.1|4992686_4993304_-|CBS-domain-containing-protein
MMMKAQDIMTTEVVTIRGSATVAEAVAMMNDLCLRALIVERRHEQDAYGIVTETDIVYKVAAYGVDPKKVRVFEIMTKPCITVNPDLGVEYVARLFANTRIRRAPVIKDELVGIISVTDILTKSDFLEKPKSVLFDEAIEQAIADARTICAEKGVTSRECAVAWDIVEEMQAEASHQRAMKLEKTAFDEYCEENPEAAEARMYES
>NC_019729.1|WP_015177779.1|4993799_4994837_+|class-II-fructose-bisphosphatase
MDNVIGLEIIEVVEQAAIASARLMGKGEKDEADRVAVEAMRERMNKIHMRGRIVIGEGERDDAPMLYIGEQVGICTREDAHTFCNPDELVEIDIAVDPCEGTNLVAYGQNGSMAVLAISEKGGLFAAPDFYMNKLAAPAAAKNHVDIRKTPTQNLKIISDCLGRSIEDLVVVVMDRPRHKDLINEIRGAGARVRLISDGDVSAAISCAFSGSNIHALMGIGAAPEGVISAAAMRCLGGHFQGQLIYDPAVVKTGLIGESKESNIARLKEMGITDPDKIYNAEELASGETVLFAACGITPGTLMDGVRFFGGGARTESLVISSQSKTARFVDTIHMFDHPKALQLN
>NC_019729.1|WP_015177780.1|4994982_4996275_+|glutamyl-tRNA-reductase
MNIAVVGLSHKTAPVEVREKLSIPEQKVEAAIAQLRGYPHIQEVAILSTCNRLEIYIVTSESEPGVREVIQFLSECSKVYVQSLRPHLFILLHEDAVMHLMRVASGLDSLVLGEGQILAQVKQTHKLAQQYKGVGRILERLFKQALTAGKRVRTETSIGTGAVSISSAAAELAQMKGQNLASSKIAIIGAGKMSRLLVQHLLSKGASHISIVNRSVRGALELAGQFKDAQLHLYQLSEMMQVIASSDLVFTSTAATDPLLNKAKLEAVLDPNRPLMLVDISVPRNIDSDANELANVRSFNVDDLKAVVAQNHESRRKMAMEAQGLLEQEVEAFDLWWRSLETVPTISCLRDKIELIREQELEKALSRLGSEFSEKHQDVIESLTRGIVNKILHDPMVQLRAQQDIEARRQAMQTLQTLFNLDVDVNQQYS
>NC_019729.1|WP_015177781.1|4996526_4999547_+|UPF0182-family-protein
MTNRRIYQIILLIAGLWLVVEFASRISAEILWFQEVGYLQVFLLKLKTQGLLGTIAIAVSSGFLLGNLALARRLQHPAEEKKSPVAGALFASLRANKTGKNTGNNYEIPVAKSQITFSWLLLTIFGLSSIATLTVIHCGLLAASSIAYFGIVDNLPLPPVQLGIESIQHGAVQLFSRWWQLGLLLGTMLAVVIKPDFWLRAIALFLSLAIGLIAASRWTNVLQYFHPTNFNTTDPLFNQNISFYVFILPILDLLGWWLAVVFLYSLVSCALTYLLSGNSLSQGRFLGFSRSQQRHLYGLGAALMLAAAFRYWLGRYALLYSRGDVTYGANYADVTVRLPCYGFVSILAGAIALLMLCQVYPFKIKNELIKKIILAWLTLSFLVTLLLPTIVQQLLVKPNELAREQPYIQRSIAFTKEAFELNKIEIKTFDPAGKLTYADLEKNQLTISNIRLWDKLPLLQTNRQLQQIRPYYTFPDADIDRYTIKNEKAQKVDSDSQQVFLAARELDYTAVAPEAQTWVNEHLVYTHGYGFTLSPVNRVGVGGLPDYFVKDIGVAAQKGETALEITSDRIRASIPIGYPRIYYGEITDTDAMAPTKVQEFDYPSGEDNVYNTYSGRGGIAIGSMWRRWLFANYLKNWQMALTRNFTPETKLLYRRNINKRVRAIAPFLRYDSDPYLVVANANLSHDDIEKEREGNGNKIKPSPSDTDKSPNYLYWIIDAYTASDRYPYSDPGNHDFNYIRNSVKVVIDAYNGSVDFYVAYPSDPIINSWIAIFPGLFKPLDKMPPALRKHIRYPVDLLSIQSERLLTYHMEDPQVLYNREDLWRVPNEIYGTEQQPVAPYYLITKLPTETAEEFILLLPFTPVSRNNLIAWIAGRSDGGDYGKLLLYLFPKQRLVYGPEQIEALINQDPVISEQISLWNRQGSKALQGNLLVIPIEQSLLYVEPLYLEAERNSLPTLVRVIAVYENRIVMAENLELALKALFQQQSTNKPAIIRPLEGTAPALNSE
>NC_019729.1|WP_015177782.1|4999676_5000345_-|hypothetical-protein
MLNGNQIISGLALAFAGFAYALVFFVLLPFRQYDYAAPLGAIAMAIALTIAMNWLLSASLLTGWSWVAALFGFQVALMFFGSVFLEDGLYLPNLLFFGTTIVGYASVYTSFSQQKTLVIVGLCTVFCLASMYLSLIGGYVLKGKNPFQGSSTQMLPLLNQRVEIITDNPKQLYLNGKTGELTHIDRYEVTVKLDSGGDERLMWPYVDVWWQDIKAASEQKSQ
>NC_019729.1|WP_015177783.1|5000573_5001524_-|hypothetical-protein
MANQLPPVLVTFDADVLMTGRTQVWQEYAKVGTCYIPEVVYDEIDRLTGQAVEKAQEQVAREFMRFFADSGWIATDAQETHRALEPSIKNQSKPAMLVVATAQCVYGLAQEHPDALVIFVSNSQPLLKRLASVGATNLCGITGAMLLNWARKGERPPAATQQLQSLMRTLAERKSTQRPNSRIQDAAVGQTATSASKLTGTRGASDLKSPSSFTKTNKTGLTQRRSASSRPKTPPRSREESKDYEPAVYRMKHITPPKKRDSGFLSTVFNFLGALFFLTVAVGILWRVFDVRGFRKTFVPALPQPVQQFVKSIDRK
>NC_019729.1|WP_015177784.1|5001764_5003393_-|site-2-protease-family-protein
MFPTTLFHVPQNVMLLLDRSAIDRLKPLLAQATGMPVVASENTATIALVLVALGILGWGFYRARPFGKLGILAWLQSVALMSPWLLFFGLFAAGIYLNLVAVLLLLVASTGLYIYLGRQLRKAASDTVLPRPDAAEVKSQSDAFSAPESQRPPAPETVKIVTSSPANNESEIIPVPVEDLKAIKGIFGIDTFFATETIPYQDGVILKGNLRGDPEQVHSRLTASLEERLNDRYRLFLVENQDDKPVVIILPSTNDPQPTTVYQKILAVVLLLATIATSLETGGLLLGFDFFNSPARYLEVLPIAAGIWAVLGSGEIARRVLANRYKVGLSWPFFIPTLQIGCFGALDRFESLLPNRKVLFDIAFAGSAAGGIVSVLMLVTGLLLSHPGSLFQIPAEFFKGSVLVGTLAKVVLGSALQQQIVDVHPLVVIGWLGLVITAINLMPAGQLDGGRIVQAIYGRKIASRTTLATFVVLAIVSLVNPLALYWAIVILILQRNLERPSLNELTEPDDARAALGLLALFLMIAALLPLTPALAGRLGIGN
>NC_019729.1|WP_190274243.1|5003515_5003680_+|hypothetical-protein
MIPHWLWQTYTQKGSSVDRPEAGRLVWVWQAVLCICWAKQTRNKQGLSSSLLTG

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Crispr_ID: NC_019729_48

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_48

5142695-5142796

Orphan

Consensus_repeat	Method
CAGGCTGATGACCCAATTGCTCGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_48

>merge|NC_019729|48|5142695-5142796|CRISPRCasFinder
CAGGCTGATGACCCAATTGCTCGATCGATCAATTTTAGATTTTAGATAAAATAAAGCGACCCACTGATAAATCCGCAGGCTGATGACCAAATTGCTCGATCG

>NC_019729|48|47|5142695-5142796|CRISPRCasFinder
CAGGCTGATGACCCAATTGCTCGATCG	ATCAATTTTAGATTTTAGATAAAATAAAGCGACCCACTGATAAATCCG
CAGGCTGATGACCAAATTGCTCGATCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015177882.1\|5135777_5139056_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_019729.1\|WP_015177881.1\|5133273_5135640_+\|DUF3488-domain-containing-protein	unknown	unknown	gnl\|CDD\|224224
NC_019729.1\|WP_015177888.1\|5146652_5148176_-\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NC_019729.1\|WP_015177877.1\|5129200_5129740_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_019729.1\|WP_015177889.1\|5148255_5149458_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015177891.1\|5150356_5150758_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019729.1\|WP_015177886.1\|5143845_5144037_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177884.1\|5139439_5142229_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_019729.1\|WP_015177893.1\|5153603_5154122_-\|Ycf51-family-protein	unknown	unknown	gnl\|CDD\|371212
NC_019729.1\|WP_015177892.1\|5150904_5152602_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_019729.1\|WP_015177879.1\|5130684_5131866_+\|heterocyst-differentiation-protein-HetZ	unknown	unknown	unknown
NC_019729.1\|WP_015177887.1\|5144102_5146523_-\|sucrose-synthase	unknown	unknown	gnl\|CDD\|274149
NC_019729.1\|WP_015177874.1\|5126288_5127320_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_019729.1\|WP_015177876.1\|5127927_5129028_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NC_019729.1\|WP_015177885.1\|5142885_5143596_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225943
NC_019729.1\|WP_015177890.1\|5150028_5150370_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_019729.1\|WP_015177894.1\|5154304_5155363_-\|response-regulator	unknown	unknown	gnl\|CDD\|306677
NC_019729.1\|WP_190274250.1\|5130179_5130326_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015177880.1\|5131858_5132929_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274251.1\|5139039_5139447_+\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015177882.1\|5135777_5139056_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	7.46782e-20
NC_019729.1\|WP_015177881.1\|5133273_5135640_+\|DUF3488-domain-containing-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.20869e-22
NC_019729.1\|WP_015177877.1\|5129200_5129740_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	3.3848e-58
NC_019729.1\|WP_015177889.1\|5148255_5149458_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.84611e-21
NC_019729.1\|WP_015177891.1\|5150356_5150758_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	3.48561e-05
NC_019729.1\|WP_015177884.1\|5139439_5142229_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.37342e-11
NC_019729.1\|WP_015177893.1\|5153603_5154122_-\|Ycf51-family-protein	gnl\|CDD\|371212	pfam10726, DUF2518, Protein of function (DUF2518). This family is conserved in Cyanobacteria. Several members are annotated as the protein Ycf51. The function is not known.	4.70548e-82
NC_019729.1\|WP_015177892.1\|5150904_5152602_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.83167e-42
NC_019729.1\|WP_015177887.1\|5144102_5146523_-\|sucrose-synthase	gnl\|CDD\|274149	TIGR02470, Sucrose_synthase_1, sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_019729.1\|WP_015177874.1\|5126288_5127320_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.60871e-26
NC_019729.1\|WP_015177876.1\|5127927_5129028_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	5.36938e-39
NC_019729.1\|WP_015177885.1\|5142885_5143596_-\|peptidoglycan-binding-protein	gnl\|CDD\|225943	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane].	7.22792e-20
NC_019729.1\|WP_015177890.1\|5150028_5150370_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.12737e-10
NC_019729.1\|WP_015177894.1\|5154304_5155363_-\|response-regulator	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	5.90397e-82
NC_019729.1\|WP_015177888.1\|5146652_5148176_-\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NC_019729.1\|WP_190274251.1\|5139039_5139447_+\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	7.90253e-21

>NC_019729.1|WP_015177884.1|5139439_5142229_+|site-specific-DNA-methyltransferase
MPRKKDDKSTPIDSVKHQDKRANIPTEELRDFMADDEKKPQKVLYPRDSSLDPQLVWKGKDEQDSQDLEVPAVPIYIQEKIHPSVIIEDFRTQVKKEQPQQQLSLFSDFNGLDFDQLIDFYQHQDGVKWANRMILGDSLLVMNSLAEKEGLKGKVQMIYLDPPYGIKFGSNWQVSTRKRDVKDGKAEEVTRQPEQVKAFRDTWELGIHSYLAYLRDRLVVARELLTGTGSVFVQIGDENVHLVRCLMDEVFGSENFCGLITFQTTTGQSSTLLASTSDYIIWYGKKKSKVKYRNTFWRKGKTDITSSDWVESQDGIARKAFAEEIDNHAFLPINTKIFRSDNLTSDGLGQNTTVNFEYKGQIFHPGKNHWKTVPEGLRMLEKANRLLVVGKTLCYKRYRDDFPVSPIAEVWDDTRLSTFSSEKFYVVQTNTKVIQRCLLMTTDPGDLVIDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARTRLMSAKYPYYLLADSPEGIQKEAEITKQLPPTQPKTENEIKKGFVYKRVPHVTLKAIANNPEIDTIHAKWQLQLETIRTQLNQLLKKSWEEWEIPREPETKWSDEAKDLLTQWWKLRQQRQKEIDESIARNADTELLYDQPYEDNKRIRVTGPFTVESLSPHRILSTDEERPASENEGIAQASDQFENRIIDNLKKAGVQNTFKNERLKFEYLEPYAGTYIHAVGEYTEGDETVKRVAIHIGPEYGTVSVDDIKEAAKEAVKGLGHNVLIVCGFAFEPNVNEESKRYGKLQVLITRMNADLLLGDELLKKTGAGNLFMVFGEPDIELKRENGQLVVTLKGLDIYDPTTGEIRSTSPNDIACWFIDTDYNEESFFVRHAYFTGANQPYDKLKRALKAEIDEDAWSQIYSTSSRPFNPPKGKNGKPGKIAVKVINHYGDEVMKVYEC
>NC_019729.1|WP_190274251.1|5139039_5139447_+|DUF5615-family-PIN-like-protein
MMMIARLYSNENFPLDIVNKLRCLGHDVLTSYDAGQANQGIPDDDVLRFAHRQERVMITLNRKDFIELHKCGQEHSGIILCKECQGNFDYEQQAFKIHELILENSKLKSRLFRVKKSNVKGCNTQIFIYKEVTHA
>NC_019729.1|WP_015177882.1|5135777_5139056_+|DUF433-domain-containing-protein
MSQVVIENPIINSAFSEPKRHFRFDDDGITDEQVPSRRISHYFIPIAQPKKKSKQFQQLELNLGEWTQDRVEENKFINQVRDRVSLWRRGGYLYVTPTTKKLLEYWTNPDRERKLYFCQIEALETVIYITEVAKKCGDNWIENQLRQFNADANPLLFRMACKMATGSGKTVVISMLMAWHTLNKVANPQNNKFSDAFLVVTPGITVRDRLRVLQPNDTENYYKKLDLVPPELMPELDKAKIVITNYHAFKLRELNSAAKLTKDILTQGQKSAFTETPDQMVRRVCKDLGNKKNIIVINDEAHHCYRRRVGDDNIKLKGDDRKEAEKRNEEAHLWISGIEAVQSKIGVKMVYDLSATPFFLKGSGYPEGNLFPWVVSDFSLIDAIESGIVKIPRVPVSDDNVTGELPAYRSIWPLIRDDLPKKGRNTQDESKSSPEPKLPGLLEGALDSLYSNYKKAFELWEQDTEAQDRGRTPPVFIVVCNNTNVSKLVYDYIAGWDTGKKYPDSRPVLSPGKLPLFSNVQDGKWTARPNTILVDSEQLESGEAMSAEFKKIAAQEIEEFKAEYRERYPGKDPEKITPEELLREVLNTVGKPGKLGEQIRCVVSVSMLTEGWDASTVTHILGLRAFGTQLLCEQVVGRGLRRINYAVNKEGKYEPEYAEVYGIPFAFIPCAGSNKTPKRGALPTRVRALPERSECEITFPRLTGYRYDITRGKLTANFTDVSQYVLSTADLPTVTVNAPIVGQSSIHTLDELKSHREQEVAFLLAKMTLEKYFRGDGSQKQEKTTQHFFDADVQAWLFPEVLQITKQWLRECVSYKDHTYPQLLMLTEFAHDATDRIYQAIAAGESHKSLKPILRPYDTFGSTRYVDFDTARLVYTTDYNKCHVSHVVLDSNWEAKMVESLEQMNEVVCYVKNQNLGFAIPYTLNGEQKNYLPDFIVRINDGQEDLLNLILEVSGEARKDKAAKVATARTLWIPAVKNHGGLGRWDFLEITDPWDAQKSIRMYLSKQTAETDTNRSTIQKTPGVCGGNARIRNTRIPVWTIISFYKLGASDDEILRNYPGLTPEDLKVVLSYYEQHQYEIDRVILAQDDDDS
>NC_019729.1|WP_015177881.1|5133273_5135640_+|DUF3488-domain-containing-protein
MTTDNLRNIPVLGKLWEQIEAMPPPVIEDSLLLRILVQLLVIVGIVATDVAAEEAQNLWAVPVSIVGATWSWYRRRDRNVAAKFCIAIGMLVALFAFFSRLVGELNDTRLVLAQLLIQLQVLHSFDLPRRKDLGYSMVIGLILLGVAATLSQTLTFGPLLLVFLALALPTLVLDYRSRLGFLKPEAIGEKAQGKGKNESLSLFAATLSPKYFAWLLLITVGLGLTIFAFLPRLPGYQLRTFPVSAPIQYQGEFDSRSILNPGYVRGGNQKGTGGGRGRNPDKGPGEVDSTFYYGFNQRINQNLRGEMKPQVVMRVRSQAAGFWRVLGFDKYTGQGWEISRNEQAQTVNRPRWSYQFYLNPFPNAPRTQEVIQSYTIVAQLPNLIPALNKPRELYFPTTEVAVDAEGGLRSPVELADGLTYTVISHVPFRDRSLLGKTGTNYPKNIRNFYLDVPPEIAQKVREKTEEILAARTRVSKSDRPIDSPYEKALYLAQYLKQNPNYKIEKALPYLEEGEDLVEGFLFGYKNTQGGKKVTGGYPDHFSTVLTIMLRSIGIPARLAGGFDTGEFNPFTGYYVVKNTDAFLMTEVYFPNHGWFGFNPIPGYPLIPASVEDNQTFSAIESFWKWIAGWLPTPLRSGLDSVIGFVIGWISLIVGWFLGQFAKGWVGLFTGLIAAIAFGFMGWLIWQVWRKWRHRRWLAKLPPVEGVYQEMLKDLASRGFAKQKAQTPLEYAEAMRGNHPTDEAEVIDEVSQAYVRWKYGGEAGNLNQLRQLVENLRRSHLKKLKKRWF
>NC_019729.1|WP_015177880.1|5131858_5132929_+|hypothetical-protein
MNNETNRDAEAFDRHFLDWILQGPIANTSNEDEENLNPSPRSEEWGDTEDNSGVEYWEWDEPDPLDYQVGAHSNAPAQPLTIGEIPTVQDRFQTLLKERLRAEIESNPPLFPWETEFKSYDHDYPDDVAPKWVPPLHIWTPQLQNIRWGRLPIPIAQGVFAQLLEPCQELVMSSLRQGSKLVRAVDGLFPGQSQELNELAGLVLRGSLRGLLDLEDFPNYEAASTDQQMVLSLLAAKEIIESLTLDCPVNQPPVSREWLTGLGALTLEAQYLSNRNREQPMPCLRVECQFPGAGSLELKGGDAEATAQRPNSGHLSVELFDPQPNKTYALEVRFQNFETRPLMFAIRPILSGPDSN
>NC_019729.1|WP_015177879.1|5130684_5131866_+|heterocyst-differentiation-protein-HetZ
MREICQSVETIFQLLLDELKKSTRASEQNCQDVAGRLAAEVNRICTESQRIQASGDIEGSAQSLAQHRLQQCLHYYNLGSGPGRVELHSTLSAIVYRYITPPQVQSSYQGRVELIKDFLQGFYLEALKAFRRETQLPPTYSPRTRLELAEYMAFVERFGKRRIPLPRNRSQQLIILRAQTFSQQQPKETSVDMEQAADGGASDSDQTWNDTSVHSVREAMAGQGSAAIRPPGDESESLRQNVIDELVGYLKERNQQDCADYFVLRLQDLPTNEIESLLGITPRQRDYLQQRFKYHLLRFAMSHRWELVHQWLEADLDRNLGLLPSQWQAFGEQIGPEGQRLLKLKQQGLSESAIAQTLGSTVAQVQKRWFKLLELAWELRNRSDSGEGASSDE
>NC_019729.1|WP_190274250.1|5130179_5130326_+|hypothetical-protein
MLEIILSQTVKSTFQDATKKQTGIAVETLGQNWRKTPIEYSRETLRPI
>NC_019729.1|WP_015177877.1|5129200_5129740_-|DNA-starvation/stationary-phase-protection-protein
MRKLNIGLSDEQRAGVIELLNRDLSDAYLLLIKTKKYHWDVVGPQFRSLHQLWEEHYQVLTENIDAMAERVRALGGYPIGTAEGFLKYASIKEHIGDLPLATEMVSRLVDDHELVIRNLRQHVHQCGEEFNDDGTADFLTGLMEQHEQMAWMLRSFIEGESLASDGQQPKAQTPTASHA
>NC_019729.1|WP_015177876.1|5127927_5129028_+|glycosyltransferase-family-2-protein
MNTSQNTLNQPLVSVIIPAFNAEIFIAKTLESVLSQTYQNIEVLVVDDGSTDTTAEIVQSIAQKDSRVSLFQQSNAGVAVARNLAIEKSKGEYIAPIDADDIWYPQNLEKQVNCLTSSAPSVGVVYSWSVDINEKDLLTGGFYNSTIQGEVYTALIYKYFIGNASSSLIRRVCFAKVGGYNCKLKLENAQGCEDWELHLRIAEHYQFKVVPEYLVGYRQIASSMSSNYAAMAKSHSLIMADVRQQHPEIPSSIYRWSSSNFYIYLAVKSNRSGNHRSTLSWLYRAFKEDLLMALLRHNLYLLSIESIIKIIVTAPTESGLELKQASESSEGMTLARIETRTKAHRMLPSQVYERMRFNSLGNRKST
>NC_019729.1|WP_015177874.1|5126288_5127320_-|glycosyltransferase-family-2-protein
MISTADPTVSVIIPVHNGGAYFRTCLSKLAQAVPRPIEIIVVADGESDGSWRLAKEFGAKVIRIPECGGPARARNLGAQAAKGDILFFVDADVAVCPEAVGYAISVFKNNPYLAAFIGSYDDDPGDPDFLSQYRNLLHHYVHQTGNEEASTFWGACGVIRREIFLQMGGFNESYRQASIEDIEFGYRLKQAGYNIRLCKTLQVKHLKRWEPMGMVKADFFYRALPWTELIWRDRQLNNDLNLQVSNRISVILTYAVLLAILGTCWSLSFLLLAGLLAIPLVAINAPLYRFFYRKHGILFALKTIPWHWLFYFYSGLAFAIGTGRYLYQKKPVTGKVSLPVSAQ
>NC_019729.1|WP_015177885.1|5142885_5143596_-|peptidoglycan-binding-protein
MRVTTVTIFSLIALLAPGLTRKATAAFDSEPFVQEQYRRDFTAPADPGASVSPEGKSQADMFNKPFYAGEQPPARKEKTISAGADGPEVAAIQQRLQVHSFKVGTIDGSYGSRTTSAVRAFQQSKGLNSDGIVDKETWTALAADPAPAPEAVQSNAPIESNAAVAGNPPTLLNKGAVGSKVKTLQVRLEIQGYDPGPIDGIFGARTATAVKNFQEYKGLTANGMVDETTWKALGQK
>NC_019729.1|WP_015177886.1|5143845_5144037_+|hypothetical-protein
MGTAALRSYELEAGTGSHYSSETRLIPRCFVAKANILVETAFFSLTPLVENLLSFTNLYGRVV
>NC_019729.1|WP_015177887.1|5144102_5146523_-|sucrose-synthase
MSELFQAVIASDEKTDLRKFVSDLRALGNTYLLRNDIVNAFAAYCTKYEKPEQFHQFSHLSKLIYYVQEIILEEDSICVLLRPKIANIEIVRVRDDLTVEQMTVQELLDARDRFVNHFHPQEGDILELDFGPFYDYSPTIRDPKNIGKGVQFLNRYLSSKLFQDPRQWQETLFNFLRIHRYNGVQLLINDRIKSQQQLSEQVKKALTFVGDLSEEEPYERFRLVLQMMGFEAGWGNTAARVQETLGILDELIDSPEPQTLEAFISRIPMIFKIVLVSPHGWFAQEGVLGRPDTGGQVVYVLDQAKSLEKQLQEDIHLAGLDSLGVKPKVIILTRLIPNSDGTRCNERLEKVHGTENAWILRVPFREFNPKLTQNWISRFEIWPYLETYAIDAEKELLAEFQGKPDLIVGNYSDGNLVAFLLSRKLKITQCNIAHALEKSKYLFSNLYWQESEDKYHFSLQFTADIIAMNAANCIVSSTYQEIVGKPDSVGQYESYHCFTMPDLYHVVNGIELFSPKFNVVPPGVNESVYFPYTRIEDRVQGDRDRLNELLFTLEDPEQVFGKLDDPQKRPLFSMARLDRIKNMTGLAELFGKSKELQEKCNLILVAGKLRVEETDDYEEAEEIKKLYAIIDEYNLHGKIRWLGVRLSKSLSGEIYRVIADAQGIFVQPALFEAFGLTILEAMITGIPTFGTQFGGPLEIIKDGVNGFYINPTHHQETAQKLLDFLSKCEQNPNYWYEISTRGIDRVYSTYTWKIHTTKLLTLARTYGFWNYSSKENREDMLRYIESLFYLIYKPRAKALLAEHANR
>NC_019729.1|WP_015177888.1|5146652_5148176_-|carboxypeptidase-M32
MQTLDKTQAKFAQLAAHLREVNDIESASSLLHWDQSTYMPPKGASARGRQLATLKQISHEKFTDPKIGELLEDLRFYEQTLPYDSTAASLIRIARRDYDRAARVPATFMSALCRHQADCYEAWAAARAANNFAAVEPYLEKTLELSRQYADFFPGYEHIADPLIDRSDYGMKVSLLRPLFAKLRQELVPIVEAITSQPPADDSCLHQDFPESQQLEFTRKVVERMGYDFQRGRQDTTLHPFMTNFSIDDVRITTRVYEDHLDQALFSSIHEAGHALYELGNSPEFEGTLLAGGVSSGVHESQSRLWENLVGRSRGFWECFYPQLQGVFLRQLGHVSTDAFYRAINKVSRSLIRTDADEVTYNLHVAIRFDLELAMVEGKLAVRDLPEAWNERYRTDLGVVPATDSEGAMQDVHWYVGTIGGMFQGYTLGNLMSAQFYETAVKLNPEIPVEIEQGNFTVLHDWLKQNIYQHGRKYTAVELLDRVTGSPLSIDPFIRYIRHKYGEFYVI
>NC_019729.1|WP_015177889.1|5148255_5149458_-|tetratricopeptide-repeat-protein
MQKLASIEKPIDSGEKSIAVNTQKAQILYERGNALEAMGRFQAAIESWEEAIELEPKFYEARYNQGVALKKLGQLEEAIAAYNKSLTIKPNNPEAWYNRANVLRKLNRLSEAIASYEKAIELKPSYREAWTNRGNTLVSLEKFSEAIASYEKAIAIKPDYCEAWYNKAFALRKSDQNTAAIASYDKAIELKPDLHQAWYNRGLALADEKLYPEAVASYDKTLQLRPNSAAAWNKRGTAIAQMGKFEAAIASWDKALALKPNDSETFYNRGLALANLQRFEEAIASWDKTLELHPDNTEAWYNRAIALKKIQRFTEAIASYDKIIALKPDDPNLYYQKACVYALEKQAGEVANSQELVATSIGLAIENLSKAIELNPQKYRKLCKNDSKLRTIREEVRFLA
>NC_019729.1|WP_015177890.1|5150028_5150370_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MTKGKIFLVPFPYDDLSANKLRPAACLTNPLGARRHVIIAYITSRLPTNLLETDIVLDASHPDFQASGLRVPSTIRLHQLVSVSTVVVQRELGELSSDTQAQIAEKLYTLLSQ
>NC_019729.1|WP_015177891.1|5150356_5150758_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MTQLNVTVTNDGFPELIAHVEDTGERIVIEQEGRAIAAIITYADLKRLEALEAALINKAKLEEYEWLKAAIANPAFDSLRDSAEDIYTLADGVPFHDPEWIKTVAIDPNFGSILDPEEDIYTIADGKPFHDQG
>NC_019729.1|WP_015177892.1|5150904_5152602_-|tetratricopeptide-repeat-protein
MINWNELYNLGLGLFEKGRAFFDETLEMKPEPQACYDRGVALGNSGRWEEAIASYDKALEFKPDYHEAWNNRGNALGNLGRWEEAIASFDKALEFKPDDDVAWYNRGIGLGNLGRWEEGIASYNKTLEIKPDYHKAWYNRGIALHNLGLLEEAIASYDKALEFKPDYHEAWNNRGNALGNLGRWEEAIASYEKVLEFKPDYHEAWNNRGITLGNLGRWEEAIASFDKALEFKADYHEAWNNRGNALGNLGRLEEAIASFDKALEFKADYHEAWNNRGNALGNLGRLEEAIASFDKALEFKADYHQAWNNRGITLGKLGRLEEALASYDKALEIKPDDEAWYNRGIALGKLGRWEEALASFDKALEIKPDKDEAWYNRGIALDDLGRWEEAIASYDKALEIIPDDAAWNNRGIALGNLGRLEEAIASYDKALEIKPDSYESWYNRGSAMINLGRLEEAIASYDKALEIKPDDDAAWYNRGYSLRNLGRWEEAIASYNKALEIIPDDDEAFYNKACCYALQSQSDQAIHNLQQAINLNPDKWREMAKTDSDFDSIRSDTRFQALIQE
>NC_019729.1|WP_015177893.1|5153603_5154122_-|Ycf51-family-protein
MNVNSNLLMYAQWAGMLTAALAILTVIAFIFKWGFRFRLVGVTSFMGVIAASIFGLGLGLFTRTEIPGAVRYSLVYDTGGVQTVVTVPPTITESELEATMRQAAADLYSPGRSGRGRDYMTIRVRTVLHPEPGLSQPLFLGEVRRSLATRDDDKMAIEIFPEKVAILKKYQA
>NC_019729.1|WP_015177894.1|5154304_5155363_-|response-regulator
MKGDEGSVLVVDDNEVNRDLLARRLQRQGHVVTVAEDGLQALEMLRRDPFDLVLLDIMMPQMNGYQVLESLKADENLRYIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPVLLKARISACLEKKRLRDKEQAYLHELAQEKEKSERLLLNILPKAIAQRLKHGEITIADSFAEVTVMFADLVGFTKLSAHLSPAQLVELLNEIFSAFDELAERYGLEKIKTIGDAYMVVGGLPTPSDDHAESIAEMALEIQAAMTKMRTKGGQPLSIRIGIHTGPVEAGVIGTKKFTYDLWGDTVNTASRMESQGVPGSIQVTVATYERLRGKYVFEERGVIPVKGKGDMMTYLLVARNA

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Crispr_ID: NC_019729_49

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_49

5412016-5412096

Orphan

Consensus_repeat	Method
AATCCCAAATCTCAAATCTAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_49

>merge|NC_019729|49|5412016-5412096|CRISPRCasFinder
AATCCCAAATCTCAAATCTAAAATCCTTGCATCCCCCGAATTTATCTCGCGCAAGTCAATCCAAAATCTCAAATCTCAAAT

>NC_019729|49|48|5412016-5412096|CRISPRCasFinder
AATCCCAAATCTCAAATCTAAAAT	CCTTGCATCCCCCGAATTTATCTCGCGCAAGTC
AATCCAAAATCTCAAATCTCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178053.1\|5413045_5415094_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_019729.1\|WP_015178056.1\|5421118_5421724_-\|chorismate-lyase	unknown	unknown	gnl\|CDD\|366866
NC_019729.1\|WP_015178054.1\|5416006_5419444_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015178051.1\|5411600_5411804_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178047.1\|5407867_5408731_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_019729.1\|WP_015178058.1\|5423641_5423980_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_019729.1\|WP_015178052.1\|5412271_5412784_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178043.1\|5400900_5402451_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_019729.1\|WP_015178057.1\|5422014_5423634_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225307
NC_019729.1\|WP_015178050.1\|5410999_5411437_+\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NC_019729.1\|WP_015178049.1\|5410279_5410630_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178044.1\|5403307_5404669_+\|DUF4912-domain-containing-protein	unknown	unknown	gnl\|CDD\|225867
NC_019729.1\|WP_015178048.1\|5408863_5409946_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_019729.1\|WP_015178060.1\|5424386_5424938_-\|acireductone-dioxygenase	unknown	unknown	gnl\|CDD\|380360
NC_019729.1\|WP_015178061.1\|5425205_5426171_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320684
NC_019729.1\|WP_015178045.1\|5405237_5406554_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270453
NC_019729.1\|WP_015178046.1\|5406737_5407637_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_019729.1\|WP_041622684.1\|5402945_5403209_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178055.1\|5419644_5420943_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_019729.1\|WP_015178059.1\|5423967_5424384_-\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178053.1\|5413045_5415094_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_019729.1\|WP_015178057.1\|5422014_5423634_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|225307	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only].	0
NC_019729.1\|WP_015178054.1\|5416006_5419444_+\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.05481e-46
NC_019729.1\|WP_015178047.1\|5407867_5408731_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.59413e-77
NC_019729.1\|WP_015178056.1\|5421118_5421724_-\|chorismate-lyase	gnl\|CDD\|366866	pfam01947, DUF98, Protein of unknown function (DUF98). This is a family of uncharacterized proteins.	6.31651e-83
NC_019729.1\|WP_015178043.1\|5400900_5402451_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_019729.1\|WP_015178050.1\|5410999_5411437_+\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	1.06653e-57
NC_019729.1\|WP_015178058.1\|5423641_5423980_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	6.37496e-54
NC_019729.1\|WP_015178048.1\|5408863_5409946_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	7.68095e-151
NC_019729.1\|WP_015178060.1\|5424386_5424938_-\|acireductone-dioxygenase	gnl\|CDD\|380360	cd02232, cupin_ARD, acireductone dioxygenase (ARD), cupin domain. Acireductone dioxygenase (ARD; also known as 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase) catalyzes the oxidation of 1,2-dihydroxy-3-keto-5-methylthiopentene to yield two different products depending on which active site metal is present (Fe2+ or Ni2+) as part of the methionine salvage pathway. The ARD apo-enzyme, obtained after the metal is removed, is catalytically inactive. The Fe(II)-ARD reaction yields an alpha-keto acid and formic acid, while Ni(II)-ARD instead catalyzes a shunt out of the methionine salvage pathway, yielding methylthiocarboxylic acid, formic acid, and CO. ARD belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.74603e-53
NC_019729.1\|WP_015178061.1\|5425205_5426171_+\|M48-family-metallopeptidase	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	2.61198e-67
NC_019729.1\|WP_015178045.1\|5405237_5406554_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.46849e-141
NC_019729.1\|WP_015178046.1\|5406737_5407637_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.77906e-91
NC_019729.1\|WP_015178044.1\|5403307_5404669_+\|DUF4912-domain-containing-protein	gnl\|CDD\|225867	COG3330, COG3330, Uncharacterized protein conserved in bacteria [Function unknown].	4.19178e-91
NC_019729.1\|WP_015178055.1\|5419644_5420943_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	9.28763e-87
NC_019729.1\|WP_015178059.1\|5423967_5424384_-\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	3.06714e-81

>NC_019729.1|WP_015178051.1|5411600_5411804_+|hypothetical-protein
MMNDGNQKAEAPENEAAQNLSGMAKAFIVSVAWSYAEALERMKRSQNPQQPAPESPTEQAEPDPEKD
>NC_019729.1|WP_015178050.1|5410999_5411437_+|DUF3574-domain-containing-protein
MNKHLNSLCLIGVLFILPVCPATIARAQLAETSDTNAKQTNLLKDELYFGLTKPGGESVSEAEWQEFVKAVITPRFREGLTVLDGSGQFLNSSGILIRENSKIVILIYESSPEKNHAINEIIETYKRTFQQESVLRATSEVKVSF
>NC_019729.1|WP_015178049.1|5410279_5410630_+|hypothetical-protein
MNLISTAIARISSLLKGFQVKSFLSVVLVGFMLLTANVDSGHSNKGFGTSGGSKADLNNPERPQTTREWRQEARETSDSPGERAQKIGQEAGAAVKEFGEMYQDTAKRSIRELKDK
>NC_019729.1|WP_015178048.1|5408863_5409946_+|ABC-transporter-ATP-binding-protein
MAKLQLKNLNKTYSPKVVPVKDISLDVSEGEFLTLLGPSGCGKSTTLRLIAGLEQPTRGEIRIGDRNVTYLRPGDRDIAMVFQSYALYPHMTVYENMASSLKLRKISSGEINRLVTEVAASLGLTELIDRKPGKLSGGQRQRVALGRALVRQPEVFLLDEPLSNLDALLREKVRAELKQLFSSQKAPVVYVTHDQTEAMTLSTKVAVLNSGNVQQLDPPHLIYTRPANQFVAGFVGSPQMNLLVLKCQGNFAILGDFRVRLPDMPTVPPEIVLGIRPEHVGFADAEAGKIAAPEAIKGEVYLVENLGMQNLVSVRVRGVESVTVRALLPNDRHWNSEIVELVFPSQLLHWFDVKTGDRLQ
>NC_019729.1|WP_015178047.1|5407867_5408731_+|carbohydrate-ABC-transporter-permease
MSIAREQPTKKTFDIRQLILPISAILIVAYFLAPIIWQVLTSFKVNPDISAIPNVYIPKRITFDHYLSLFQRRPFALYILNSAFVSITSTLLCLAVGAPAAYALARLRLWGERIILATVTIVTLFPAVLLFLGLLEIVKALDLGNNYLALIIPYTAINLPLTILVMRSFFQQLPKDLEDAAKVDGYNTVQMLWQIVLPMTFPALVTTGILTFISAWNEFIFALTFMTRESLKTIPVATAQLSGVSVFEIPYGPIAAATVLGTLPLVLLVLVFQRRIVQGLTAGAVKG
>NC_019729.1|WP_015178046.1|5406737_5407637_+|sugar-ABC-transporter-permease
MQLDKMRQREQKTGWILVAPALIILLLVFAYPILRAFWLSLFTQNLGTELKLVFSGFANYSRMLGDGRFWQTLGNTTVFTVASVVLELILGMGIALVLNQSFTGRGIVRTISLLPWALPTALMGVAWAWIFNDQYGVINDILRRLGLIQNSISWLGDPTLAMMAVITADVWKTTPFVSLLLLAGLQSIPGDLYEAHAIDGASSWQSFRQVTVPLLMPQIVIAVLFRFAQSFGIFDLIQVMTGGGPAGATETVSIYIYSTVMRYLDFGYGAALVVCTFLILVAAVAIAAYLLSRARASQF
>NC_019729.1|WP_015178045.1|5405237_5406554_+|ABC-transporter-substrate-binding-protein
MQKINSPQQRSQKRPRLLALFAVTLATVLLLFILPALTQQPVVLTMLMQGQDIVNWRPFVKEFEQKNPKIRINLIEGPFDTNLIENLYTSAFLLGESPYDIINMDIVWVPKFAAAGWVRDLTDRIPPKQLSKFIQGNVEGGRYRGKLYRIPHASDAGMLYYRKDILEQAKIPAPKTFEEMVKISQNLQKQGKVTWGYLWQGKQYEGVSAMFVEVLSGFGGFWANPQTFEVGLDKPEAIKAVEFLKNTIASGISPPGVTTYGEEETRLLFQNGKALFLRNWPYVWKLANAEGSNVRGKIAIEPMLSSTGKTGGSCLGGWGWGIAKTSKHPEQAWKAIQYLTSEETQRKFIIQTGLIPSYKSLFTNKEIVAKYPHYPQLLKVVERPALRPPLAQYAQASDILQRYLSSAFTGRMSAEQAMKAAANETRNLLGSLKQPQAS
>NC_019729.1|WP_015178044.1|5403307_5404669_+|DUF4912-domain-containing-protein
MAKERPPLEEMTLRQLRRVASECGVSRYSRMRKSQLLASIQEIQRTKFSYSPSRKLEAQEAVEAAKFELGQEDRTGGSLSSVDEGLADLPNGYGESRVVLMPRDPEWAYTYWDIPNDRKEELRRQGGQQLALRIYDVTDVNLDTQSPHSIQEYPCDEMAREWYVPIPVSDRDYAIDIGYRCADGRWLVLARSAEVRVPPVYPSDWIEDQFITLDWEEELQGKTFAELVPPAKKLAKANGGGYSTSNAIYEQIFGMAESAEALRVAGSIFGSMQHVAGSVQQVGIHEQALSSYVFPSGVGMWAVPTMSGITASGVGMSGLTASGVGMSGLTMSGVGMSGLTMSGFGMSGVGMSGVGFAAPMRPRQFWLVADAELIVYGATEPDATVYVGGQPIKLNADGTFRFQMSFQDGLIDYPIFAVAADGEQNRAIHLKFNRETPERRTNTKQDAVVEWLG
>NC_019729.1|WP_041622684.1|5402945_5403209_+|hypothetical-protein
MTKRSQRNASIKQHWESNSACAGSTALLAAPVALTKSILSIKNRKIKLYLDRTVRAEAKKSKPPIAWGTRQAKNKQGFKGWRDLEAR
>NC_019729.1|WP_015178043.1|5400900_5402451_-|cysteine--tRNA-ligase
MTLTLYNSLTRRESPFEPIEPGKVRMYCCGVTVYDYCHVGHARAYIVWDMVRRYLMWRGYDVRYVQNFTDIDDKILNRARETNSTMEAVAERFIEEYFVDMDKLNILRADEYPRATHTMDGIKRLIHELENKGYAYASGGDVYYNVRQFADYGKLSGRKLEEMQAGASGRLETAEIEAQKKQDSSDFALWKSAKPGEPAWDSSWGKGRPGWHIECSAMVRDCLGETIDIHCGGSDLTFPHHENEIAQSEAATGKSLANYWMHNAFVTVNGKKMSKSLHNFITIRDLLDGNWSGDLESNPPQPLLGKGGSQNEGSEKSKAVEPMAVRLFVLMAQYRSQIDFTEEAIASAKNGWHTLKEGLLFGSQHGSKLGWDVEKIEQLTGQDSTLVQQFQSAMDNDFNTPGALTVLFEVAKELGKEGNVLVHQGKTETSPDLLQQKWVSLVNLAGVLGLEVQPEAETEISVGGLTDGEIEAMIQQRKDARKAKNFAEGDRIRNELKDKGITLIDQKDGTTIWHRG
>NC_019729.1|WP_015178052.1|5412271_5412784_+|hypothetical-protein
MSNSKMIGKAIAGSLCLGLLISFNASLSPASAAAPIIAQETAAPAATSIDKQLLGQWQGTVPSGQSFTFVFAPEGKLFLMAKGPDGAARAKEMRYKVNLGEKPMHLDVGLSSTETVETVFELTPEGQMRLQLQGTNPGQARPNSLNEQATVFKKVSEATALPADTQVIGF
>NC_019729.1|WP_015178053.1|5413045_5415094_+|ABC-transporter-ATP-binding-protein
MSETVLEVRNLRVQFQSADAGDASATVKAVDGIFFEVKRGQTLGIVGESGSGKSVTSLAVMGLLSSSSKIDGEIWFSPTKDGASNGAVNLLEMPDREKQTYRGSQIATIFQEPMSSLNPVYTIGFQLTEAICLHQQVSQTEARRQAASLLQEVKLLPGDDELRQRCLALRQEHSRTAAGNQAVREDDRDLMQLVNGQKQAMLDRYPHELSGGQIQRVMIAMAISCNPTLLIADEPTTALDVTVQATILALLRELRDSRGMAMIFITHDLGVIAEIGDTVAVMYRGKIVECGAIEQIFSNPQHPYTKGLLACRPTLDRQLRRLPTVSDFMDVTTNASGELVIVEKNADLDGDNSGGNPAFATGKPPRLPNISEPLLAVDNLRVGFPVQGMFGETQRLLMAVNDISFEVYPGETLGLVGESGCGKSTLARALLQLIPATSGKVFFEGQEITPPAKSSSASQWMANYRMQKEYDRKLRWLRRDLQIIFQDPFSSLDPRLSVGDAVMEPMVIHRFGKNQKEQRDRAAYLLERVGLNPDFMRRYPHEFSGGQRQRICIARALALNPKFIICDESVSALDVSVQAQVLNLLKELQTEFGLTYIFISHDLSVVKFMSDRAIVMNKGKIEEIGTAERIYRQPQQAYTRQLIASIPAGNLERIRQQQLGRKSALRAVAPWPPSPADESEQN
>NC_019729.1|WP_015178054.1|5416006_5419444_+|PAS-domain-S-box-protein
MKHSVQLEESKITKLLKVLQVLRTKITAAVTTIQKAESRKQYEKKIRLATIAPGSVFSILIIVLLVLNGWLVAGSADNFYDSSLALGFLAIANIVFLAVSARSNASWAVAGNDRPSSEPDGGDRFFSLSLDLLCVLSFDGYVKRINPAGEKILGYPPGEMIGKVFIEFVHPDDRETTLKEAESLAAGNNTVGFENRWRCRNGSYKWIAWTGTRFCEEELLYGVGRDITAQKQAEAALQDSQHFVERIANTSPNLLFVYDESEQRNVYSNREITNTLGYTRAEVENMGSNLLPTIIHPDDLAKFPGYFQQLENAPDGEVIEYEYRVRDRQNCWHWLVSRNIVFSRTEEGKIKQRLGADTDITERKIAEQALAEQLKLSVFTADVGISLTQNKTLLATLQYCTDAVVRHLDVAFARIWTLNEEGNVLQLQASAGIYTHIDGAHSRIAVGEFKIGLIALERQPHITNSVQEDPRIKDKEWAAREGMVAFAGYPLIVDNQLLGVIAMFARQELNESTLIALASSADTIALGIKRKQTEEALARQKQTLRAIIDNAPIWVWVTDTKGKMLLVNKTFCESVNVPEEKFLAASHSSEIFGAEAFANCMASDVQVWSQDTPFYADEIIQFSDGKNHHLEVIKAKVKEANGSAIGLIGLGLDVTQQKEAQRKLQASEARFRKLAEQEALLNQLASNIRESLDLDTILATTVQQIRDLLQLDRCQFIWYWPDASPPVWAVEYEAKNADLPSLLGLVPAGVTGSHAERIANLEIIRVDDCGTLTDPAEREFFRYIGFNSLLDIPLQTSAGKIGVICCSDSSSVRCWSDAEVELLVAVGNQLAIAINQAELYTKSVDSARIAQEQAAKLEVTLCELKLAQTQLVQAEKMSSLGQMVAGIAHEINNPVSFIFGNLTYTEEYTTNLMKLVQMYRDEYPEPSPAIQEEIEVLELDFVLDDLPKMVSSMQVGATRIRDIVRSLRNFSRLDESDMKKVNIHEGIDSTLMILEHRLKVQPDSVAGTEYHRPAIQIVKEYGQLPLVECYAGLLNQVFMNIIANAIDVLQEPLENPGIIRIRTEVEGTLAVIRIADNGAGITDRVKQRIFDPFYTTKRIGSGTGMGLAISHSIIVEKHKGEIKCFSVVGKGTEFIIEIPIKRTEN
>NC_019729.1|WP_015178055.1|5419644_5420943_+|cytochrome-P450
MALPPGSFGLPLIGDTLNFLQDSQFAKKRHQQYGPIFKTSIFGKPTVFMCGQEANLFVLSNDNQYFVVTWPPSTRALLGPLSLALQTGANHQNRRKLLYQAFQPRALTGYIGAMEHITQRYLEKWAKMETMTWYPELRNYTFDVAGKLLVGIDNGSETALGHYFETFAEGLFSIPWDLPFTLFGKAKNGRKLLLAELEKIIRDRQQGTPSGNDALSLLIWARDDEGNSLSLEELKDQVLLLLFAGHETLTSAIVSFCLLLAQNPDVMAKVRAEQQQFPATEPLSLEQLKQMTYLEQVLREVLRLIPPVRGIFRTVINPCEFGGYEIPKGWNVASGIDQTHQDSQLYPEPDRFDPDRFSSERSAKPFSYVPFGGGLRECLGKEFARLEMKLFAAKIIREFEWELLPDRDLNLIALPAPHPRDGLRVKFRRKYS
>NC_019729.1|WP_015178056.1|5421118_5421724_-|chorismate-lyase
MTATFTPKNSRTWHALNPLWQGAEDAVQKGLPHTKLAPAWQILLLGDGSPTRHLRLLTGEPTEVDVIDMSLVGEDADGAPQQIVAVPGPRLRRQVWLRTASGQRLAYATSWWEASHVDEYLQNKSLPIWASLARLRTELYRDVQGIYLGNSVALESAFEQSGPFWGRHYLFWHHGKPLTLIYEVFSPYLTKYLGPMQLDVD
>NC_019729.1|WP_015178057.1|5422014_5423634_+|NAD(P)/FAD-dependent-oxidoreductase
MLRITEIKLPLDHPQDAIASAILKKLQIPPEELLGYSIFKRSYDARKKAEILLVYIVDVETTQEKQLLQRFKKDPHVMVTPDTSYRYVAQAPSNLTVRPIVIGTGPCGMFAGLMLAQMGFRPILLERGKAVRDRTVDTFGFWKKKAEFNPESNAQFGEGGAGTFSDGKLYSQVKDPQHYGRKVLTELVNAGASPEILYINKPHIGTFKLVGIVQSLRAQIESLGGEIRFQTRVEDIHIENGKVQGLTLASGEYIASNYIVLAVGHSARDTFEMLFARGVYIEAKPFSIGFRVEHPQTIIDRCRFGDRAGHKLLGAADYKLVHHCQNGRSVYSFCMCPGGLVVAAASEPGRLVTNGMSQYSRNERNANSGIVVGITPEDYPGHPLAGIEFQRRLEERAFELGGGTYNAPGQLVGDFLANRPSTALGSVQPSYTPGVVMTDLSESLPDYAIAAIREALPAFDKQIKGFAMDDAVLTGVETRTSSPIRIKRKEDYQSLNTEGLYPAGEGAGYAGGILSAGIDGIKVAEAVALSILRSSNHKI
>NC_019729.1|WP_015178058.1|5423641_5423980_-|XisI-protein
MDKVSLYRQYIQELLTERAQRRAPSDPVSSETIFDLVKDRYQLVNVGWKNGSTRIYGCVIHVDIKDGKIWVQHDGTEEAIADQLIARGVPSQEIVLAYHAPHVRQYTEFAVG
>NC_019729.1|WP_015178059.1|5423967_5424384_-|XisH-family-protein
MPAKDKFHELVKTALQNQGWIITHDPYHIDLGFVDFYIDLGAEQLLAATKDNEKIAVEIKTFLAPSTISEFHTAVGQFINYRIALEYDDPERTLYLAVPLDIYTRFFTYSFIQMVIERNQIPLLVYDTEKEEISQWIK
>NC_019729.1|WP_015178060.1|5424386_5424938_-|acireductone-dioxygenase
MAILRLENGTTYTQQSDIARELASLNIQLNRWPVGDSAEIQNLLAKDALDDNQKEQVLQALDGYFQQLKETAGYQSRDLIVLHPDIPNLDTMLSKFNKCHIHADDEVRYIVAGEGIFGFVRPDGSQVELTVQPEEFINVPANTEHWFYLTAARKIKAVRYFTTTEGWTPEYTDTEIRSGLAIV
>NC_019729.1|WP_015178061.1|5425205_5426171_+|M48-family-metallopeptidase
MPTYTGISSEAFQHPLDRQAEEALRSVPGFDLIASKFVEFVYERPQFVYLMGNSIQVGPRQYASIYHIFRECLQDLDVFPEPGLFVSQNPSVNSYALGKNQPYVVLNTGLLDLLDEAEIRVVLAHELGHIKCGHPILNQMATWAVSVASTIGEMTFGLGNMVGSGLIYAFYEWRRKAELSADRAALLVTDDLNSVMKTMMKLAGVSSKYADQCSLQEFIRQSDNYQDLDRDNLNQVYKFLLYNGGQGVMLSHPFPVERLRYLRDWASSEEYRQIKLGNYKRAVAEGAVDVKSQTPNSETEALRRQIEELQREIDRQKSKRN

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Crispr_ID: NC_019729_50

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_50

5463123-5463238

Orphan

Consensus_repeat	Method
CGAATCCGGTTAATTGCACCTGATATTTGTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_50

>merge|NC_019729|50|5463123-5463238|CRISPRCasFinder
CGAATCCGGTTAATTGCACCTGATATTTGTAGGGAGACGGCAATGCCGTCTCCCTACCGTGGAAAAAGATTATATAATCGGAGCGAATCCGGTTAATTGCACCTGATATTTGTAGG

>NC_019729|50|49|5463123-5463238|CRISPRCasFinder
CGAATCCGGTTAATTGCACCTGATATTTGTAGG	GAGACGGCAATGCCGTCTCCCTACCGTGGAAAAAGATTATATAATCGGAG
CGAATCCGGTTAATTGCACCTGATATTTGTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178090.1\|5453026_5454781_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|277327
NC_019729.1\|WP_015178091.1\|5455683_5456877_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NC_019729.1\|WP_015178099.1\|5464933_5466526_+\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379101
NC_019729.1\|WP_015178106.1\|5471282_5471759_+\|DUF4065-domain-containing-protein	unknown	unknown	gnl\|CDD\|226128
NC_019729.1\|WP_015178088.1\|5450821_5451370_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_019729.1\|WP_015178089.1\|5451656_5452748_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|274029
NC_019729.1\|WP_015178096.1\|5461326_5461530_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178094.1\|5459143_5460073_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NC_019729.1\|WP_015178093.1\|5458091_5458853_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NC_019729.1\|WP_015178104.1\|5469298_5469535_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178097.1\|5462031_5463096_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|215237
NC_019729.1\|WP_015178092.1\|5456970_5458047_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340832
NC_019729.1\|WP_015178098.1\|5463499_5464465_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_019729.1\|WP_015178102.1\|5468253_5468670_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350221
NC_019729.1\|WP_015178100.1\|5466830_5467730_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|235186
NC_019729.1\|WP_015178095.1\|5460238_5461021_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178105.1\|5469807_5471190_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|366375
NC_019729.1\|WP_015178101.1\|5467981_5468254_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178103.1\|5468873_5469233_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111584.1\|5467711_5467918_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178090.1\|5453026_5454781_-\|CapA-family-protein	gnl\|CDD\|277327	cd07381, MPP_CapA, CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.49536e-71
NC_019729.1\|WP_015178091.1\|5455683_5456877_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	1.7465e-08
NC_019729.1\|WP_015178102.1\|5468253_5468670_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350221	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Pyrobaculum aerophilum proteins, Pae0151 and Pae2754, and homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.11074e-36
NC_019729.1\|WP_015178106.1\|5471282_5471759_+\|DUF4065-domain-containing-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	4.16836e-21
NC_019729.1\|WP_015178088.1\|5450821_5451370_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	5.50214e-23
NC_019729.1\|WP_015178089.1\|5451656_5452748_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|274029	TIGR02198, Uncharacterized_sugar_kinase_BU060, rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	7.54928e-121
NC_019729.1\|WP_015178099.1\|5464933_5466526_+\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	3.34063e-65
NC_019729.1\|WP_015178094.1\|5459143_5460073_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	1.59493e-97
NC_019729.1\|WP_015178093.1\|5458091_5458853_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.13753e-158
NC_019729.1\|WP_015178097.1\|5462031_5463096_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|215237	PLN02433, PLN02433, uroporphyrinogen decarboxylase.	0
NC_019729.1\|WP_015178092.1\|5456970_5458047_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340832	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.	1.5876e-105
NC_019729.1\|WP_015178098.1\|5463499_5464465_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.33724e-25
NC_019729.1\|WP_015178100.1\|5466830_5467730_+\|M48-family-metalloprotease	gnl\|CDD\|235186	PRK03982, PRK03982, heat shock protein HtpX; Provisional.	1.06379e-148
NC_019729.1\|WP_015178105.1\|5469807_5471190_+\|AAA-family-ATPase	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	2.36175e-07

>NC_019729.1|WP_015178097.1|5462031_5463096_+|uroporphyrinogen-decarboxylase
MSALNEVPLLLRAARGETLDRPPVWMMRQAGRYMKAYRDLREKYPSFRERSEIPEVAIEVSLQPWRAFQPDGVILFSDIVTPMPGLGIDMDIAEGKGPIIHAPIRTQQQIDNLQPLNPEESLPFIKTILKSLREEVGNKSTVLGFVGAPWTLAAYAVEGKGSKDYAIIKNMAFSDPTLLHQLLSKFADAIAVYVRYQIDCGAQVVQMFDSWAGQLSPQDYDTFALPYQKQVFEQVKKTHPDTPLILLVTGSAGLLERMTTSGADIISVDWTVDMADARKRLGPNMNVQGNLDPGVLFGSQPFIRDRILDTIRKAGHRGHILNLGHGVLPGTPEDNVRFFFETAKQADKLLAVAA
>NC_019729.1|WP_015178096.1|5461326_5461530_-|hypothetical-protein
MFDWIVKTVADASGVTSQIKVAEWARLNQTNAFDMGPKNYQRCLYDLGLGGKYHELEYNENGSLKYQ
>NC_019729.1|WP_015178095.1|5460238_5461021_+|hypothetical-protein
MKAHKLLNSIAAAVLVTGLALTGISSSAVGEQIRNNDRIDGVIRRTSPIYRFRNMWTPGSPTEELRGQEYTFSAREGDNIEVFLDTDRSRGFTPVMVLFYGNNKQVAFTQDRSFNYQIPRSGDYKLLVLAKDASRGGSYTLEVSGIDGGDRRSRNSRDDWYTRRDDDRYDGQYDRARLLEDDFDLRAVDCRERRSMVRVRFDDGNQDSTYCAVPNRRFPAGDYYYNSRTRDLDSARRNDSRFDAGRDQCRVVVGGVCVTR
>NC_019729.1|WP_015178094.1|5459143_5460073_+|LD-carboxypeptidase
MTNIKFLQPGDLLKVIAPSGTLRESTNFEKGVEIWKSRGYRLELTPGFDDRWGYLAGSDENRVRQLADALNDPDCRGILCVRGGFGSTRLLEKGKVGKPENSQFPTPDSHSPKWLIGFSDITALLWNHDKLGIWGVHGPMLTTLADEPDWSVDRLFDCIEGRPLPSLQGKGWGSSKATGRLFPANLTVASHLLGTPYQPDLTGVILAFEDVSEAPYRVDRMLTLWRMAGAFAGVRGIALGRFSRCEIDPSIPSFSIEEVLRDRLGDLNIPIVSDLPFGHDGVNAALPMGITACLDAESGLLICGGKSQL
>NC_019729.1|WP_015178093.1|5458091_5458853_+|type-I-methionyl-aminopeptidase
MGTERLVLLSSREIEKMRQAGRLAAELLLHLEPMVKPGVSTLEINDEAERWTLARGAKSAPLGYKGFPKSLCASVNEVVCHGIPNAKQILREGDIINIDVTPLVDGYHGDTSKTFFVGKPSPVAKKLVEVTEECLRRGIAEVKPGARTGDIGAAIQEYAEAQGFSVVRNFAGHGVHRVFHTEPEILHYGKRGTGKKLRQGMVFTIEPMINEGTWEVEILGDGWTAITKDGKLSAQFEHTLAVTDSGVEILTLP
>NC_019729.1|WP_015178092.1|5456970_5458047_+|glycosyltransferase-family-4-protein
MTNNHLKVLFLSTSVGQLGSGLGGGVELTVLNIAKKLQSLGHKIAVVAPIGSVLESIPIIEITGELQVTAQTQDYYDPIVMPADSVLANMWEYARQVQDEWDVIVNFAYDWLPFYLTPFFRTPIAHLISMGSLSAALDRIAGQTAVQFPGTIGVHTASQAKTFAFAGECQLLGNGIDLSLYEFCDQPQSKLAWLGRIAPEKGLEDAVAAAKITGIPLKIMGKMQDEDYWQKICTDYPDAPVEYLGFLTTTQMQEQVRQCRALLMTPRWVEAFGNVAIEALACGVPVIAYERGGPAEIVRDGLTGFLVEPDSVNGLVGAIARLDQIDRSACRRQAEVEYSLEALGDRIERWFKSILKLS
>NC_019729.1|WP_015178091.1|5455683_5456877_+|HEAT-repeat-domain-containing-protein
MAHYRSSVCLFTCIACLGAAIGPSADGGQQVLNASYRAVSQEIARANSPPDDRQDSKPPKPSPAPDKNKSQPSKTSKSNSKLPKSVSNFIVILSRQRGFLMLGLAAVVVTAAAVFIMLKLVSSDESNYSKRRRGRFDRHNQRNSQFTNPDSPTNSHESRPQETSSGGQPLSALPYPFDLQKGHSIESSDRPLPFILESGEPESEDAGVEGDRINSDTSPLEAHSNGYSDTAFNIPETTNQTDSLANKKGIALPETDGRPKVDIIEALIEDLQQLNPAKRGKAIWELGQRGDSRAVEPLLDLLANSDSKQYSLVLASLSEIGIRTLKPMNNAWSISLQNENPEVRKNAIRDLTRIYELVNQISYLLHRATDDPDPEVQETARWAINQLNRIRPRSGMD
>NC_019729.1|WP_015178090.1|5453026_5454781_-|CapA-family-protein
MSQQDILNLAKEGDARAIAFLIGQALQSFGVTAKASRENDTLHLLLEAENLPAEEACLRVTVKGLQRLQPNNLYSVTVYGRRSGEQLPAWTQTVELKKRLTSAPVSPLVAVNAAVAASKAVAASLPASPIPVTLPELEKTQNVTTAPTQTPEKSPPQPPKTPTPKPPNQRQQKPSPQPELAGTKTKKSGLSVGAVSLILVPISGFVLASQLYKSSPTATNNPLTSKPAVQEVSSTPAPAAAAKPLPAPKSPSPAAKKPAAVPATVSIKAVGDMVPGTNYPYNKLPAKKEMLLESVKPYLKGADILFGNFESTMTDYPYSSKAGGGRMLIAFRTPPSYAKIFKDVGFDILSIANNHSYDFHEQGFNDTIKNIDSNGMKAVGKRDQIVYKNVKGVNFAFIGFSNYGDVHNSLLELKAGAEVVKKAKEKADIVVISVHAGSEGTGAINVRNKTEFFYGENRGNMVLFSRTMIDAGADLILGHGPHVPRAMELYKGKLIAYSLGNFLGYRTLSTAGALGKSLILDVKMTPQGDFVSGKIIPIQLDGRGVPAVDNNFRTVGLIDRLTKSDFPNSGLTIDDKGQILKKSK
>NC_019729.1|WP_015178089.1|5451656_5452748_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTNDYSDFLPQLRASTEQLLKRLDCFDRAQVLAIGDLTLDEFLTGQVERISREAPVLILRYENTQQVPGGGANAVYNLAKLGGKVKVAGLVGKDDQGKALCGIFEAAGIDTGGILIDSQRPTVTKTRISGHARQSVTQQIVRVDRKSDELPDLDLQLQLADYIRQQIPTVDAVVCSDYGDGVLTRLAIESAVVPGKTIVDAQTNLQRYSGAMLFTPNLPEAEQAVGYPIKNPQTLMQAGRDLLNLTQAQKILITRGEEGMTLFERANGAEIKNSPPPTSICEKGEFAIQSWDIPPFNKTDVFDVTGAGDTVVAAMTLALCVGASGWEAAVLGNLAASIVVRQFGTATTTAEEMKEALKAMIDD
>NC_019729.1|WP_015178088.1|5450821_5451370_+|response-regulator
MAGQKILVIDDSKVIRVRVREMLPQGNFEVLEAKDGEEGLKLIRQARPNLIMLDFLLPKVSGWEVYQKVQAHPELSKIPLVIMSGREEEVMEKIPKPFEKHFFAFIAKPFEKKQLTEAIKSAMVLAKKKPVPEAPAAAAPPSGAGAAEIQAMTVKMAKMQAEIDALKKQMTQVITIIKQKLK
>NC_019729.1|WP_015178098.1|5463499_5464465_+|NAD(P)-dependent-oxidoreductase
MNAKKIFITGASGCIGHYMAETLIQETNHELYLLVRNPEKLKFDWKARPGIHIIQGDMRDIDRHAELLQTINVAILAATAWGGTQEVFDVNVTKTLRLIQLLSPQTCQQVIYFSTASILGRDNNLLKEAGELGTDYIRTKYNCMVLLSALTNLPPITALYPTLVLGGDAEKPVSHLSSGLPLVAKWIGLIRWFQADGSFHFIHGADIAKVVNYLVQHPQASEEPRHFVLGNPAITANEVVEQACTYLNKKIFFRITLSPWLADFFIWLFRIQVAAWDRFCISYRHFTYQNLVNPESIGMPSYCGTVADMLRTSGIPGKDSK
>NC_019729.1|WP_015178099.1|5464933_5466526_+|B12-binding-domain-containing-radical-SAM-protein
MRVLLVYPLFPKTFWSYEKILELVDRKVLLPPLGLVTVAAILPQEWEFKLVDRNIRQITEAEWEWAELVILSAMIVQKADLLDIIREAKRRGKSVACGGPYPTSVPEEPQAAGIDYLILDEGEITLPMFVEAIGRGEKSGIYRSDGVKPDVTTTPVPRFDLLELDAYDSMSIQFSRGCPFQCEFCDIIVLYGRKPRTKTPQQLIAELDYLYNLGWRRGVFMVDDNFIGNKRSVKLLLKELKVWQEEHKFPFTFNTEASIDLAQDQELMNMMVACNFNAVFLGIETPDEESLQMTKKFQNTRNSLIESVELIAKSGLRVMAGFIIGFDGEKPGAGQRIVKFAEAAAIPSTTFGMLQALPHTALSHRLAKEGRLRDKSGNLNQTTLMNFIPTRPLEDIAREYVEAFCEVYDAEKYLDRTYRHFLMLGAPTANIPARIPSWIDLRALLTVVWRQGVKRKTRWKFWHHLFSILRRNPAVWDHYLTVCAHNEHFLEYRQIVRDEIEAQLAEFLANESQTVYQEPVAVEEKQVQAV
>NC_019729.1|WP_015178100.1|5466830_5467730_+|M48-family-metalloprotease
MLGTNQLRTAALLGLLSGLLVLGSYYLIGNEQGLYIGLALAAFSSFSSWYYSDTAALMAYRAQPIARSEAPEIYDMVASLSEKAQIPVPKIFVVPTQSPNAFATGRDPEHATIAVTEGIINLLSREELEGVLAHELTHIRNRDTLTQAVAGTIAGAITFVGRILTFGALYGPVTRDSRQGANPFGLLFLIILAPLSATVIQLAISRTREFAADSGAVEITNNPIGLANALQKLEKMGHEIPMHGNPAMSPLLIVNPFSTKGLQSLFRTHPPTEDRIHRLLAIAQQQQQGTPVMAYINGV
>NC_019729.1|WP_150111584.1|5467711_5467918_-|hypothetical-protein
MTARIGAIEWVRILPVTANTKQCDDSTHSDRPYLINNQKPNKHTETRLLQNTGFLNTAAFSIAQTPLM
>NC_019729.1|WP_015178101.1|5467981_5468254_+|hypothetical-protein
METMKLISHIGSDGILLLQMPAEFKDTSVEVVVVVQHLPSEEVKPKYNAWGQLTTKKSIQAAIARMLQLRQEIALDKSSIRSMIEEGRRF
>NC_019729.1|WP_015178102.1|5468253_5468670_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MQFVLDCSVAISWCLVDEDNDYANAILAIMPDCEAFVPGIWSLEVANTLLVAERRNRMTSEQSEMAIALLQSLLIQVDEATNSNALSSTLVLGRQEGLAAYDAAYLELAVRLKLPIATLDNRLADAATRCGVALVVID
>NC_019729.1|WP_015178103.1|5468873_5469233_-|hypothetical-protein
MSQSQRERARNWVNGNTAAAVAVVCGTALVPGAAAVVLLSQEAIMAYHIGSIYKSEFSQQDAAALAGEIGLAAVAGKVLALEAAILAGPAAFLIKPAIAAGIVKLLGEAIIAYCEEKWG
>NC_019729.1|WP_015178104.1|5469298_5469535_-|hypothetical-protein
MRTEAFKVLQTFGLEYPNYKMLIQAKSGNRYVVLYSDSLGVEVGQEILIDFNDYNDWQTIDNPKNGRKSNISKVSKVN
>NC_019729.1|WP_015178105.1|5469807_5471190_+|AAA-family-ATPase
MNLKEMVKLADDMVFAKTGKHLNDLQEKILRGTWQHEDYNEIAKDVNLSEARVREVGMELWQSLSQELGEKVSKSNFRSAMERLQISISSKYFLPQDSVQIGCINYCEKAKHLTNTPNSTESKEQTSNPQQTQTLHQDLSEMPELGTFYDRTLELDTLTTWILQQHSRLIALTGISGIGKTTLAVQLVQQIKDEFECVIWCSIDASYTPDEFEHKLIQFLLQSEKLDSPATNPKRLPLIKYLQKDRCLIVLDDVHNLFCSGESAGKYKPEYEEYRSLFKQIEKLSHQSCLMLIGWEQPREVTQVKNQNTSIRTLQLKGLDTAAGREILRDYGLEEIDNSEALIHRYQGNPLWLKSVATLIKELGISATELLLDDSILLPEDLKDVLQQQYDRTSELEKQVMSLLARENQPVNLANLLGKRQISSSDLLNALQSLSRRCLIEKQESLYTLPPVLRQYIKGL
>NC_019729.1|WP_015178106.1|5471282_5471759_+|DUF4065-domain-containing-protein
MTAITTVTTASKLADYYIWFANDVGSYLSNHKLQKLLYYAQAWYLAFEDKPLFDEDFEAWVHGPTIPALFYEYKEQFGFKPILKEVEKPEFPQEVQEFLDDLSDDYFFRDAYELELMVRREDPWIQARGELPRDEPCRAIISKELMKAYYKTRVIEEE

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Crispr_ID: NC_019729_51

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_51

5747468-5747594

TypeV

Consensus_repeat	Method
TTGGTTTGCGGGTAGTCAGAAACCGGGTTTTTTACGGAAATACT	CRISPRCasFinder

1 spacers

Cas14c_CAS-V-F,cas14j

The CRISPR arrays of NC_019729_51

>merge|NC_019729|51|5747468-5747594|CRISPRCasFinder
TTGGTTTGCGGGTAGTCAGAAACCGGGTTTTTTACGGAAATACTTCGCTACACCTTGTAGAAGCGTCCAAAAACCCGGTTTCTTTGGTTTGCGGGTAGTCAGAAACCGGGTTTTTTACGGAAATACT

>NC_019729|51|50|5747468-5747594|CRISPRCasFinder
TTGGTTTGCGGGTAGTCAGAAACCGGGTTTTTTACGGAAATACT	TCGCTACACCTTGTAGAAGCGTCCAAAAACCCGGTTTCT
TTGGTTTGCGGGTAGTCAGAAACCGGGTTTTTTACGGAAATACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178311.1\|5743274_5745062_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_019729.1\|WP_015178310.1\|5741991_5743209_+\|transposase	Cas14c_CAS-V-F	-	gnl\|CDD\|223747
NC_019729.1\|WP_006633402.1\|5745291_5745504_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|378324
NC_019729.1\|WP_015178318.1\|5748413_5748635_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178315.1\|5746892_5747159_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_019729.1\|WP_190274260.1\|5749350_5749512_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178321.1\|5749487_5750672_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NC_019729.1\|WP_015178319.1\|5748775_5748988_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_019729.1\|WP_015178313.1\|5745926_5746163_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178314.1\|5746476_5746710_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178312.1\|5745490_5745895_+\|PIN-domain-nuclease	unknown	unknown	gnl\|CDD\|350328
NC_019729.1\|WP_015178317.1\|5748044_5748344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_019729.1\|WP_015178324.1\|5755112_5756348_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NC_019729.1\|WP_015178322.1\|5750829_5752209_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379062
NC_019729.1\|WP_015178308.1\|5740176_5740806_+\|macro-domain-containing-protein	unknown	unknown	gnl\|CDD\|394872
NC_019729.1\|WP_083888202.1\|5749163_5749370_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_019729.1\|WP_015178323.1\|5752213_5755006_+\|WD-40-repeat-containing-protein	unknown	unknown	gnl\|CDD\|315987
NC_019729.1\|WP_015178309.1\|5741187_5741775_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_006633400.1\|5747155_5747365_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178316.1\|5747711_5747945_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178310.1\|5741991_5743209_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.04679e-47
NC_019729.1\|WP_006633402.1\|5745291_5745504_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	2.38397e-09
NC_019729.1\|WP_015178315.1\|5746892_5747159_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	4.43392e-12
NC_019729.1\|WP_015178319.1\|5748775_5748988_+\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	6.37457e-08
NC_019729.1\|WP_015178312.1\|5745490_5745895_+\|PIN-domain-nuclease	gnl\|CDD\|350328	cd18761, PIN_MtVapC3-like, uncharacterized subgroup of the VapC3-like nuclease subfamily of the PIN domain superfamily. The VapC3-like nuclease subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of various Mycobacterium tuberculosis VapC toxins including VapC3, VapC11, VapC15, VapC21, VapC25, VapC28, VapC29, VapC30, VapC32, VapC33, VapC37, and VapC39. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.40338e-70
NC_019729.1\|WP_015178317.1\|5748044_5748344_+\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	3.80539e-09
NC_019729.1\|WP_015178321.1\|5749487_5750672_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_019729.1\|WP_015178324.1\|5755112_5756348_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.15524e-63
NC_019729.1\|WP_015178322.1\|5750829_5752209_+\|AAA-family-ATPase	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.0021641
NC_019729.1\|WP_083888202.1\|5749163_5749370_+\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	1.78323e-12
NC_019729.1\|WP_015178323.1\|5752213_5755006_+\|WD-40-repeat-containing-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	4.47972e-05
NC_019729.1\|WP_015178311.1\|5743274_5745062_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_019729.1\|WP_015178308.1\|5740176_5740806_+\|macro-domain-containing-protein	gnl\|CDD\|394872	cd02900, Macro_Appr_pase, macrodomain, Appr-1"-pase family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macrodomain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.	1.01175e-47

>NC_019729.1|WP_006633400.1|5747155_5747365_-|hypothetical-protein
MSEITLDETKLKELLKAAIFELLKEQKEVFSEILTEALEDIGMENAIKEGENTETVSREQIFKILKRQP
>NC_019729.1|WP_015178315.1|5746892_5747159_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNVEFKKSFEKDLLKILDADLLQRIQEAIEEVENAEKLNEVSNVKKIKGDTDYYRLRVGDYRIGIKVNDGVVYFVRILHRKEIYRYFP
>NC_019729.1|WP_015178314.1|5746476_5746710_-|hypothetical-protein
MISQPKSVPELLREEIPDVPQGKQPIRLLLCGPPKAVDSIVNLLHVLGFAEVGEWSPPLPLPIAGEVIRILTRYWKE
>NC_019729.1|WP_015178313.1|5745926_5746163_-|hypothetical-protein
MTLANYQLSLNFEQILALVKQLPYPEKLQLSQELEKEVLNSKLTALLESFRTDELSVETITQEVEAVRSEIHARKTNH
>NC_019729.1|WP_015178312.1|5745490_5745895_+|PIN-domain-nuclease
MFLIDTSVWISVFRDRTGVVRQSLEAIINDESIFLNRFTQMELLQGCRDDREWTLLETYLQEQDYIESTPNTWVAAARIYYDLQRQGLTVRSSIDCCIAQLAIEHQLILVHNDRDFETIQRVRSLNCLRFRHEN
>NC_019729.1|WP_006633402.1|5745291_5745504_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MTTTVELNEELVKEAFRLTNFKTEKELIDFALQELIRTRKKRNLLDLSGQIQFSTDYDYKALRENRNVSD
>NC_019729.1|WP_015178311.1|5743274_5745062_+|aspartate--tRNA-ligase
MRTYYCGELRSEHIGETVTLYGWVDRRRDHGGVIFLDVRDRSGIVQIVSDPERTPDSYHGAEALRSEYVVKITGRVTSRPEDSLNPKLPTGEVEIYADEIELLNAVRKQLPFQVATAENESVREDLRLKYRYLDLRRDRMSRNLQLRHQVVKAMRRHLEDVGGFIEVETPILTRSTPEGARDYLVPSRVNLGAWYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSLEEVIELNEGLVSQIFQSVKGVELPRPFPRLTYAEAMDRYGSDKPDTRFGMELVDVSDLMKDSGFKVFSGAVAAGGIVKVLPIPGGNDAISNVRIKPGGDLFKEASEAGAKGLAYIRVRDNGEIDTIGAIKDNLTEAQKQELLDRTGAQSGHLLLFAAADATTVNKTLDRLRLFVGNELGSIDKDKMNLLWVTDFPMFEWNADEKRLEALHHPFTAPHPDDINDLKTARAQAYDLVLNGTEVGGGSLRIYQREVQEKVFEAIGLSTEEAYNKFGFLLDAFEYGTPPHGGIAYGLDRLVMLLAGEESIRDVIAFPKTQQAGCLLTNAPAGVDEKQLKELQVRSTYTPKS
>NC_019729.1|WP_015178310.1|5741991_5743209_+|transposase
MLVFEFKAYGKKQQYHKLDEAIRTGQFIRNKCLRYWMDNRGVGRKELYKYCTQLRAEFGFVKDLYSHACQAAVENAQRAIARFFDNCKNKKPGKKGYPQFKKNSRSLEYKVGGWKLSSCRKRINFTDKKGIGMLKLKGSRDLHFYQIEQIKRVRIVRRSDGYYVQFCVDAPRSALKDCKSSNPAVGIDVGIKYFLADSEGGIVENPKFYRKSEKQLNRANRKKSKKFKKGKPQSNNYKKAKNRYARKHLRVSRQREEFVKRVALRYVQSNDLVAYEYLNVQGMVKNRKLSKSISDAAWSKFRTWLDYFGSVYGTKTVAVSPHNTSQNCSNCGLKVSKSLSTRTHICPHCGYSADRDTNAAINILKRAQNTAGHAEINAWGEMPSSLVGETLLGYGNSLNQESPSL
>NC_019729.1|WP_015178309.1|5741187_5741775_+|hypothetical-protein
MTDPKVTEEPILEATLETTAIVKKEMPDATDEAIAETAALFEAIKKRAAAEVQAAGELTREAYLKAVNKASGAIEQNKDLAQERVTEAVRLIKKETEKNWLVVDAIKTRAQAQVQDAGVVSREAYLKAVRQAREAVEQNKLIERDRIEQAVDHIHTEAEKNWHLIVKEIESLNIRLTETAKSAWNALTAFFDKKH
>NC_019729.1|WP_015178308.1|5740176_5740806_+|macro-domain-containing-protein
MQIVLAALDDDLVRAWESTCGNIENVKIHHGSIFDVKCDAIVSPGNSFGFMDDGLDLEISEYFGRQIIERLQKLIQARHHGELLVGRAEIVDTDHAEIPYLIAAPIMRVPTVLRETVNVYLATRAILTLVKFGSVPDGTPVKHIIETIAIPGMGTGMGKVPPHICANQMKVALEDILLSQYEFPQSLLHAQRCHHLLYTDESEDLHWEN
>NC_019729.1|WP_015178316.1|5747711_5747945_-|hypothetical-protein
MISQPKSVPELLREEIPDVPQGKQPIRLLLCGPPKAVDSIVNLLHVLGFAEVGEWSPPLPSPIAGEVIRILTRYWKE
>NC_019729.1|WP_015178317.1|5748044_5748344_+|hypothetical-protein
MHSESTREGESDTVEVKKRYNRAVKAQITALPAKLPRIVVYLPEELKADLERLAKSHYRPVSNMVLTLIQEAVDEAKSEGRIQSDDRSQQQKSDSNEQD
>NC_019729.1|WP_015178318.1|5748413_5748635_-|hypothetical-protein
MISPPKSVPELLREEIPDVPQGKQPIRLLLCGPPKAVDSIVNLLHVLGFAEVGEWSPPLPSPIAGEVIRILTR
>NC_019729.1|WP_015178319.1|5748775_5748988_+|hypothetical-protein
MYEVNSQLPNLPAKNLKRVTSYVPPNAYNVLEDWAKQEDRTVSNLVSRIVSEAVDAYLAKKTTEDEPSSN
>NC_019729.1|WP_083888202.1|5749163_5749370_+|hypothetical-protein
MVNTLPPNNVSPAKSPRVAFYPPPEIKEKLEKLASIERRSISQMALLLVEEGLERAQKEGKFNESKDD
>NC_019729.1|WP_190274260.1|5749350_5749512_+|hypothetical-protein
MNPKTIEALEQAGWMFWKMVLDVGSPPNICVTLVDYNLYRTPQLNSCLPASKN
>NC_019729.1|WP_015178321.1|5749487_5750672_+|amidohydrolase
MLARIQELAATLAPRLIEIRRHIHSHPELSGQEYQTAAYVAGVLASSGVRAIEGIGKTGVIGELKGNSSESRWLAIRTDMDALPIQERTNLEFASRNEGVMHACGHDIHTTVGLGAAMILSQLEEKLPGHVRFLFQPAEEIAQGAQWMIKDGAMQDVDGILGVHVFPTIPGGCIGIRHGALTAAADDLELIVIGESGHGARPHEAIDAIWIASQIITTLQQAISRTQNPLRPLVLTIGQINGGRAPNVIADRVKLLGTVRSLHPETHEKLPAWIEQIVSSVCATYGAKYELTYKRGVPGVQNDPKLTQLVESAALEALGRSRVQILPEPSLGAEDFSMYLQHAPGTMFRLGVGLTDKPNYPLHHPQFEVDEAAIVTGAVTLAYAAYQYWKQHQS
>NC_019729.1|WP_015178322.1|5750829_5752209_+|AAA-family-ATPase
MKLDFDRFFDACNPSHSLKLGNSEDIRYYIDFAGVRGGKIIDIFKRTITRLARDKPTCQLFTGHIGCGKSTELSRLEKELTDEGFHVVYFESTQDLDEMDIDLTDIMLAIARRVSQSLEEGNISLQPQGFKEFLKNSWNFLQTPVSLEAEGELFGSKYKGNTDGNLEVSLPLGIAKITAKIKSNPDLRSKLRQYMEPQANKMLELINQEIIDVAINQLKQRGKKGLVVIVDNLDRIVFRPNAAGRLLPEYIFIDRGDQLRKLNCHLVYTLPLGLIFGNESEILKNRLGGGVDPKVLPMVPVKNRDGSECVEGMNLLRRMVMSRAFPDVLPEEYITLITQVFDSPETLDRLCRVSGGHLRNLMGILFGCLQQEDPPISQNVLQSVIRSSRDSLIRGIDNDEWELLFKVVKEQSIKGDKEYQDLLRNLWVFEYVDSQGNWFGLNPLLMETDKFKLWQQQNS
>NC_019729.1|WP_015178323.1|5752213_5755006_+|WD-40-repeat-containing-protein
MVNSNPAEDIAAENERSLSTLVRTIARFQGKFSLTIVRCNYASLRSAMLEKLRDRSTVEYQELVLEPATKTLYQTILNAVQEQPPKALIIVGIESVVALDDLLAGANRARDQLKQDFAFPLILWVTDDVLSKFSRSANDLKSWAPPPIQFTMPPDDLMKLLQQQANQAFADVENFKLDDWEMESLANDLLNAALDQELQASWQFIRGLVEVKKNQIDLAIEHYQQSLTFWQQNHQLERQGIVCQKIAQAYNRKAELHRAGNQGYWQEARKYLQQSLEIFEQVQRHDLAAKCISELCEVLRLLQAWEELENLAKKALEIHEIYGTPSQVAEDYGFLAEVALQSLEWGKACQSAQSALAILAQPGVSQQKNGLYRLLLAKAQRNHTQQSKAVNNLEVAKEITQPQDDVQLYLRILEELRTLYFEQGEYLKAFYIKLEQQAVKSKYGLQAFIGASRLQSPQQIIDIGLESGKSKAEIVEEIEAASGRSRDIKEISKRIRTPACKLTIVHGQSGVGKSSIIQAWLVPALQLTTFEARDILPVLVQSYHDWVRDCGECLKAGIEQLKAVKLPGAIDTPTAILKQLRLNQDRNLLTVLIFDQFEEFFFAYRDPIGRRELYDFLAECLNQISDLKIILSLREDYLFYLLEFNRATNLSIIDNDILTKKICYYLGNFSISDAKAIVQTLTKGSQFYLDDDLANALVADLAGEVGEVRPIELQVVGMQLEKRQITQLSEYQQLGDRAKVKLVEEFLAEVIADCGQENKDIAEVVLYLLTDENNTRPQKTLAELAAYLRIELVELELVLEIVVKSGVVLEVPGTPKRYQLVHDYLVPFARQWKNAKLLEIMEKVKDVQALIQTIEERTEDWKQLLAQAEAEEKELFAKAEAEGKELFAKAEAEGKELFAWLTIILATILSITLIGVLIIMELAWQQVDKA
>NC_019729.1|WP_015178324.1|5755112_5756348_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MQHQAIKVRIYPTPSQEQKLAQAFGCSRWWWNFALNKSIETYKETGKGIGQVALNAILPKLKKQEETSWLADCYSQVLQATTLKLVTAYKNFFEGRSRFPRFKSKKSKQSIQYPQNVKILANNTIKIPGEVGEVRAKIHRQIDGKVKTVTVSKTPAGKYFASIVVETEGEKPRTSTEGNVIGIDLGVKDFAVTHDGEKVSKYSNPKHLAVHEKNLKRKQQKLARKEDGSNSRFKAKKIAARVYERVSNARQDFLQKLSHKLVNENQVVVVENLNVKGMVRNHSLAKAISDCGWGIFTNFLAYKLERKGGKLVEINRWFPSSKLCSNCFYQIDEMPIDVRDWTCPHCGTHHDRDGNAAANIRTEGIRMLQTDGTAVSAVGGEVRPHSGRQSVLRHSPVSTEAPIKPLAVSGG

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Crispr_ID: NC_019729_52

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_52

5775450-5775595

Orphan

Consensus_repeat	Method
TTCAATCTCCCATCTAAAATCTAAAATCTAAAATAGAATTACCCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_52

>merge|NC_019729|52|5775450-5775595|CRISPRCasFinder
TTCAATCTCCCATCTAAAATCTAAAATCTAAAATAGAATTACCCTCCTTCACCCTTGATCTCATAAAAATCTCCAATCTCCCATCTCCCATCTTCAATTTTCAATCTCCCATCTAAAATCTAAAATCTAAAATAGAATTACCCTCC

>NC_019729|52|51|5775450-5775595|CRISPRCasFinder
TTCAATCTCCCATCTAAAATCTAAAATCTAAAATAGAATTACCCTCC	TTCACCCTTGATCTCATAAAAATCTCCAATCTCCCATCTCCCATCTTCAATT
TTCAATCTCCCATCTAAAATCTAAAATCTAAAATAGAATTACCCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_150111599.1\|5781750_5782014_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178338.1\|5775763_5776102_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|184253
NC_019729.1\|WP_015178337.1\|5774212_5775229_-\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|227894
NC_019729.1\|WP_015178334.1\|5769576_5770215_+\|TenA-family-protein	unknown	unknown	gnl\|CDD\|381703
NC_019729.1\|WP_190274262.1\|5782088_5782250_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111641.1\|5770750_5771817_-\|ISKra4-family-transposase	unknown	unknown	unknown
NC_019729.1\|WP_015178333.1\|5768317_5769283_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_019729.1\|WP_190274261.1\|5766873_5767014_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178339.1\|5776227_5776728_-\|photosystem-II-cytochrome-PsbV2	unknown	unknown	gnl\|CDD\|237450
NC_019729.1\|WP_015178341.1\|5777509_5777701_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111597.1\|5771925_5772694_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|372577
NC_019729.1\|WP_015178344.1\|5779448_5780279_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|377700
NC_019729.1\|WP_051041547.1\|5765497_5765680_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234864
NC_019729.1\|WP_015178332.1\|5767289_5767889_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_019729.1\|WP_150111598.1\|5780953_5781430_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_019729.1\|WP_015178340.1\|5776875_5777364_-\|cytochrome-c-550	unknown	unknown	gnl\|CDD\|274407
NC_019729.1\|WP_015178342.1\|5778085_5779036_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NC_019729.1\|WP_015178343.1\|5779165_5779387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378182
NC_019729.1\|WP_051041546.1\|5765147_5765510_-\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|227720
NC_019729.1\|WP_015178331.1\|5766115_5766388_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178338.1\|5775763_5776102_-\|c-type-cytochrome	gnl\|CDD\|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	1.43376e-58
NC_019729.1\|WP_015178334.1\|5769576_5770215_+\|TenA-family-protein	gnl\|CDD\|381703	cd19368, TenA_C_AtTH2-like, TenA_C family similar to the N-terminal TenA_C domain of Arabidopsis thaliana thiamine requiring 2. This TenA family belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. Arabidopsis thaliana TH2 is an orphan enzyme thiamin monophosphate phosphatase which has a haloacid dehalogenase (HAD) family domain fused to its TenA_C domain, it's TenA_C domain has thiamin salvage hydrolase activity against amino-HMP. This family includes mostly uncharacterized single-domain TenA_C- like proteins; some however have additional domains such as a HAD family domain or a kinase domain It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	2.568e-87
NC_019729.1\|WP_015178333.1\|5768317_5769283_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.02323e-94
NC_019729.1\|WP_015178337.1\|5774212_5775229_-\|CHAD-domain-containing-protein	gnl\|CDD\|227894	COG5607, COG5607, Uncharacterized conserved protein [Function unknown].	1.85095e-58
NC_019729.1\|WP_015178339.1\|5776227_5776728_-\|photosystem-II-cytochrome-PsbV2	gnl\|CDD\|237450	PRK13621, psbV, cytochrome c-550; Provisional.	1.08756e-82
NC_019729.1\|WP_015178344.1\|5779448_5780279_-\|prepilin-peptidase	gnl\|CDD\|377700	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain. This family is found at the N-terminus of the pre-pilin peptidases (pfam01478). It's function has not been specifically determined; however some of the family have been characterized as bifunctional, and this domain may contain the N-methylation activity (EC:2.1.1.-). It consists of an intracellular region between a pair of transmembrane. This region contains an invariant proline and two almost fully conserved disulphide bridges - hence the name DiS-P-DiS. The cysteines have been shown to be essential to the overall function of the enzyme in, but their role was incorrectly ascribed.	2.04683e-45
NC_019729.1\|WP_150111597.1\|5771925_5772694_+\|IS5-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.66025e-22
NC_019729.1\|WP_051041547.1\|5765497_5765680_-\|hypothetical-protein	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0.00975816
NC_019729.1\|WP_015178332.1\|5767289_5767889_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.44898e-47
NC_019729.1\|WP_150111598.1\|5780953_5781430_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	4.15797e-06
NC_019729.1\|WP_015178340.1\|5776875_5777364_-\|cytochrome-c-550	gnl\|CDD\|274407	TIGR03045, Cytochrome_c-550, cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself. [Energy metabolism, Photosynthesis].	6.93187e-93
NC_019729.1\|WP_015178342.1\|5778085_5779036_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NC_019729.1\|WP_015178343.1\|5779165_5779387_-\|hypothetical-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	0.00681976
NC_019729.1\|WP_051041546.1\|5765147_5765510_-\|ISAs1-family-transposase	gnl\|CDD\|227720	COG5433, COG5433, Transposase [DNA replication, recombination, and repair].	1.80247e-05

>NC_019729.1|WP_015178337.1|5774212_5775229_-|CHAD-domain-containing-protein
MNVKTSAKVKTQVKTLGDAASGAIEKYFRKSVAHEAEVIKDKDAEELHQMRVGLRRLRSAVTGFAPVLDWPKEASERKIGKVGRILGTLRDLDVMLESLQNRYYPNLSADEQEVLDKALLNLLKQRHRALKEVRAILEHKSYESLKQSIEDWLEKPKFQAIEHLPIAEVLPDLLLPQVSEFFLHPAWLLGTEYEEGKVKVADDLNAEAVEEKLAAEGTILHDLRKQAKRVRYLMNLFGDFYSETYEVYVEDVKAVQECLGDIQDSEVLGEFLTDFVDRDLKKELPKLAGLLAENRYAAWQKWQVLQRRYLSSEIRQGLRSTLIHPVVEDAAKVEASQP
>NC_019729.1|WP_150111597.1|5771925_5772694_+|IS5-family-transposase
MVKIVKAEKVFQKKSGRPSKLYPEDQILMTLSYLREYPTFFHLGIKWGINESNADRIVIRTEKALINSGLFNLPGKKSVYQSQIHEIETVAVDVSEHEIERPQKKQKKYYSGKQKYHTIKSQVLANTKSAEIICTAFSNGKTHDFSLFKKSKIGMNKEVELLGDKGYQGIKKIHNNSRTPIKKTKNKELSQAEKVLNRQLAKARIIIENIHRSLNIFRILSSRYRNRRRRFGLRFNVIAGIYNYELYLKTKLEIA
>NC_019729.1|WP_150111641.1|5770750_5771817_-|ISKra4-family-transposase
MTPSDQQQLKAHLKAVAKILYRNTEPTELKTFESIEKAVRQKMLSEVGPEIGSFFFPAVSGIQTGKPRKIKSIIGSLDITDNQAKYFGLKAYSQFSPLMENCCLLISANESYQMAEKDLEKFTGIKISHSTLQRLVKRQELELPTSQQGVKEITLDGGKVRLRNATKGESCYWKDYKAVCLDNIYAGAFFQNNQDLIDWTNSQKLLHPMYCLGDGHAGIWNIFKEIGDNEQRQEILDWYHLKENLYKVGGSIKRLKLAENMLWQGKVDEVINLFKDFKGQAFKTFCNYLDTHRCRIVNYQYYKEESISSIGSGTVESTIKRIGLRVKISGAQWNIENVSSMLALRCAYLNGQLSI
>NC_019729.1|WP_015178334.1|5769576_5770215_+|TenA-family-protein
MTNSNDLWQANQDLSEACLQHLFVRGIADGSLPQNSFAYYVAQDAFFLRAFARAYSIAAAKAPDWEGFEILHNLGSGVLEELRLHQGYAAKLGVNLQEAKPGIATRHYTDFLLATAWGSGVGLTVAAMTPCLRLYAFLGQQLAKPNIPEHAFSDWIFTYSSRDFEILAKRLESLVDRYAEAGPEVEATYRYAMLCERGASQFGKYIKLKVDR
>NC_019729.1|WP_015178333.1|5768317_5769283_-|glycosyltransferase-family-2-protein
MNDTPKYSLVIPIYNEEENLAELYRRISAVMERMDGPVELILINDGSRDRSLELLRELHEKDSRICYLSFARNFGHQIAVTAGLNFSRGQVVVIMDGDLQDPPELIIDMVEQWRQGYQVVYAQRTQRRQEGWFKRLPAYMYYRILRHLADVDIPIDTGDFCLMDRCVVDVLNAMPERNRYIRGLRAWIGFKQTAVKFERDPRFAGEVKYTFRKSLSLAMNGLVSFSKVPLRLSIYLGLFAAFASVLMAFLILYWRLFNPNSALTGLTIVMMAVFFLGAVQLVSIGILGQYIGRIYEEVKGRPLYTLAEVAGFDPVSQKNGK
>NC_019729.1|WP_015178332.1|5767289_5767889_+|glutathione-S-transferase-family-protein
MLKLYEYSPSGNCYKIRLLLTQLNIPFARRERDILKGETRTPEFLIKNPNGRIPVLEIEAGEFLFESNAIMFYLSEGTEFFPSDKFERAQVMQWLFFEQYSHEPFIATSRFWYLTGKAEEYKEALQQKQAPGYAALGVMEQHLANHAFFVGDRYTIADIGLFAYTHVADEGGFDLTRFPAIQTWSDRVKSQPGYISIQQ
>NC_019729.1|WP_190274261.1|5766873_5767014_-|hypothetical-protein
MLSQDAESDRAEIAATQSIQAVETEITALPTEVQACLTKRFRPVNC
>NC_019729.1|WP_015178331.1|5766115_5766388_-|hypothetical-protein
MENTLFDRTFRDSEGKIVIAQMPNLPLSVGIVASLLTLIVTTGKINLGLELVAFGSLFTWAWEELFQGVNYFRRALGLIVLVGLIAGKLQ
>NC_019729.1|WP_051041547.1|5765497_5765680_-|hypothetical-protein
METVQWFLQKRNITVDFSTFETQLREQALGLIGMGLSTVQKVLFNIASKLEKLGRFQWGH
>NC_019729.1|WP_051041546.1|5765147_5765510_-|ISAs1-family-transposase
MGTLGGLYKPEYWTDIQTIVIVERFRYLWNKTTHEVQFYLNSLPVDDRINGRAIRQHGSIENQEHWILDVTFNEDRSRIRSLNSPRNLAAIGRISLNAVNQETTLKRSWRQKSKRAAMND
>NC_019729.1|WP_015178338.1|5775763_5776102_-|c-type-cytochrome
MKRLLSIALLAIAIFTVGFGRPALAGDAANGAKIFSANCAACHIGGGNVVMAMKTLKKEALEKYGMNSLEAITTQVTKGKNAMPAFAGRLKPEQIEDVATYVLSQSEKDWKG
>NC_019729.1|WP_015178339.1|5776227_5776728_-|photosystem-II-cytochrome-PsbV2
MLRRGAVVCFLLGMLIILPLVLLAPQPVLAAADSYVNRYLQASEPVALELDSEGHTRLFSAQDLSAGKVLFEQNCLNCHVGGANLPDPTVSLSLADLKGATPPRNNINSLVAYLRKPMTYDGTEETFWCREVPESWMPQAEIENLAAFVIRAAQKAPGWGAENFES
>NC_019729.1|WP_015178340.1|5776875_5777364_-|cytochrome-c-550
MLKRYFIALTAVFLSFQLFVSSAMAIELSPELRTLPLNDKGTPVVLSLKQVEQGKRLFNSACAQCHAAGMTKTDPNVNLSPETLALANPPRNNIESLVDYMKNPTTYDGFEEISELHPSMKSADIFPEMRNLSDDDLYAIAGHILLQPKIVSKQWAGGKGAR
>NC_019729.1|WP_015178341.1|5777509_5777701_-|hypothetical-protein
MGFADLSIAEIAEDFNVPVEDVIRLCDELEIAYKHPQTRLALEDVKAIMSALEKRRDSKLLAD
>NC_019729.1|WP_015178342.1|5778085_5779036_-|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MSLFDWFANRRKSVPNSQERPEREIADGLWNKCEACGALSYTKDLRANQMVCLECGHHIRVYSDDRIEQLIDPNTWVPLNEGLHATDPLKFRDRKKYSDRLREFQEKTGHLDAVETGTGKLENLPVALGVMEFQFIGGSMGSVVGEKLTRLIEHATRERLPAIVVCASGGARMQEGMLSLMQMAKISGALERHREARLLYIPILTHPTTGGVTASFAMLGDIIIAEPKATVAFTGGRVIEQTLREKLPENYQTSEYSFAHGFVDLIVPRTQLKKTLGQLISLHQPQPFLAGSEFSALEASDSHALPPQTHAVKLSP
>NC_019729.1|WP_015178343.1|5779165_5779387_-|hypothetical-protein
MSWITLTTTSFRWEAELMQQLLAAHEIPARIVDLGIASYLGAGSATALQVLPEHQRTASLLISPVEDEPQSGD
>NC_019729.1|WP_015178344.1|5779448_5780279_-|prepilin-peptidase
MEIIFNCLVTAIVFIVGSAIGSFLNVVVYRLPAGLSVIHPPSRCPKCLNQLRNYENIPVFGWLWLRGRCNHCRSRISARYPLVEAATGLLFLLIFWRFGVTVQTLGFWALFSWLLALSLIDCDTMTLPNSLTRSGLVVGLVFQMAKGWWPTFSPIDSIHYLVLDGIAGAVVGLWLFDAIGLAGSIGLGQNAMGAGDTKLAALMGAWLGWKYLLLAGFIACIVGAFAGGGAIALGLLDRRQPMPFGPFLALGAAITALWGEAILSTYLQLFFPNFSF
>NC_019729.1|WP_150111598.1|5780953_5781430_-|helix-turn-helix-domain-containing-protein
MARILKITIEESVEFLEKKLKNTRTASQRERIQVLWLKTGQVQQHQELANRLGRDKSTISRWLQKYRRGGLSELLLVKKAPGQEPHLTGDVLEGLKERLATGVPFKSYGAIVEWLNSEYNLFLTYATVYAWVHYRLQALTESATSAKCFTGRRSSGAF
>NC_019729.1|WP_150111599.1|5781750_5782014_+|hypothetical-protein
MVSQVLDPDKSLSQAVKGMSTWLSVARVKPPSSDTGAYSKARQRLPERLVQQLVPVVAEALEKQVPRLTAMVWTTGAGSRRHNRVDE
>NC_019729.1|WP_190274262.1|5782088_5782250_+|hypothetical-protein
MVVLFSLLTGAVVSAGIASLATSEIVMSRLLYANLVPSDVILADRACAAIISI

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Click the colored protein region to show detailed information

Crispr_ID: NC_019729_53

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_53

5824369-5824479

Orphan

Consensus_repeat	Method
AAAAAAACTCAATGTTATTGTGGAACGGGCTTCTAGCCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_53

>merge|NC_019729|53|5824369-5824479|CRISPRCasFinder
AAAAAAACTCAATGTTATTGTGGAACGGGCTTCTAGCCCGTCAGGAACAGGCTTTCCGGGCTGTTCCACAAAAAAAACTCAATGTTATTGTGGAACGGGCTTCTAGCCCGT

>NC_019729|53|52|5824369-5824479|CRISPRCasFinder
AAAAAAACTCAATGTTATTGTGGAACGGGCTTCTAGCCCGT	CAGGAACAGGCTTTCCGGGCTGTTCCACA
AAAAAAACTCAATGTTATTGTGGAACGGGCTTCTAGCCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178363.1\|5813152_5813899_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178378.1\|5826894_5830071_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|197276
NC_019729.1\|WP_041623419.1\|5823867_5824296_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_019729.1\|WP_015178365.1\|5815365_5815728_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178384.1\|5835080_5838323_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224400
NC_019729.1\|WP_015178379.1\|5830090_5830273_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178373.1\|5824522_5825434_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237771
NC_019729.1\|WP_015178364.1\|5813988_5815011_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_015178368.1\|5818185_5819757_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_019729.1\|WP_015178375.1\|5825750_5826020_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019729.1\|WP_015178366.1\|5816145_5816826_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NC_019729.1\|WP_015178371.1\|5822765_5823686_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NC_019729.1\|WP_015178369.1\|5819783_5821010_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_019729.1\|WP_015178367.1\|5817085_5817961_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NC_019729.1\|WP_015178377.1\|5826363_5826669_-\|DUF4090-family-protein	unknown	unknown	gnl\|CDD\|372561
NC_019729.1\|WP_150111601.1\|5830551_5833308_-\|DUF1156-domain-containing-protein	unknown	unknown	gnl\|CDD\|224657
NC_019729.1\|WP_015178370.1\|5821074_5822754_-\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	unknown	unknown	gnl\|CDD\|225451
NC_019729.1\|WP_015178382.1\|5834339_5834768_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178374.1\|5825485_5825764_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_019729.1\|WP_015178381.1\|5833379_5833613_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178378.1\|5826894_5830071_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|197276	cd09179, PLDc_N_DEXD_a, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	2.34615e-68
NC_019729.1\|WP_041623419.1\|5823867_5824296_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.06214e-37
NC_019729.1\|WP_015178364.1\|5813988_5815011_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.88515e-18
NC_019729.1\|WP_015178384.1\|5835080_5838323_-\|ATP-binding-protein	gnl\|CDD\|224400	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only].	5.19211e-29
NC_019729.1\|WP_015178373.1\|5824522_5825434_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NC_019729.1\|WP_015178375.1\|5825750_5826020_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.86255e-05
NC_019729.1\|WP_015178368.1\|5818185_5819757_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.00687e-70
NC_019729.1\|WP_015178366.1\|5816145_5816826_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.09338e-103
NC_019729.1\|WP_015178371.1\|5822765_5823686_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	5.4582e-23
NC_019729.1\|WP_015178369.1\|5819783_5821010_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.49482e-66
NC_019729.1\|WP_015178367.1\|5817085_5817961_+\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	9.66673e-47
NC_019729.1\|WP_015178377.1\|5826363_5826669_-\|DUF4090-family-protein	gnl\|CDD\|372561	pfam13319, DUF4090, Protein of unknown function (DUF4090). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	1.5947e-52
NC_019729.1\|WP_150111601.1\|5830551_5833308_-\|DUF1156-domain-containing-protein	gnl\|CDD\|224657	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].	1.47398e-109
NC_019729.1\|WP_015178370.1\|5821074_5822754_-\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	3.03437e-113
NC_019729.1\|WP_015178374.1\|5825485_5825764_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	5.30282e-13

>NC_019729.1|WP_041623419.1|5823867_5824296_+|NUDIX-hydrolase
MTYRNPAPTVDIIIELADRPHRPIVLVERRNIPYGWAIPGGFVDYGEAVETAAKREALEETSLNVELIEQFYVYSDPNRDAREHTISIVFLASATGEPQAADDAKNLQVFESWQIPDRLCFDHDRILRDYWRYRHYGLRPRL
>NC_019729.1|WP_015178371.1|5822765_5823686_-|esterase-family-protein
MPKWLGKVLGIGAGTILLLGASGYWYVFIAGAPQLDPPKVVVDANLNFELKTYKSAAMNSERTYGLILPPGYAKNPKQRYPVIFLLHGGHGDARAYQDKAAVTSVLHDLYKSKRLPPSIVITPDGNDKRGTSPLWDPQYFDGPNGKVGSAIGSELVSIVKSRYRTLEDPKFWAMGGQSSGGWGAFNIGLRYLNNFNILFSHSGYFTDRSGKANSPKYLVETLSVKDKQQLRAYLDAGEADENFLSSTQKFHEQLNGLGIANEFNKFPGGHGIVGPDVGWNYWHKHLADSLSYVGKQFKISLATQKN
>NC_019729.1|WP_015178370.1|5821074_5822754_-|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF
MLPQKTRIGLWTASFLTGLVGVINLLSAVSPSLPDRRNWLEPFFPFPVRAGGHFFAAVIGFMLLTLATNLWRRKRIAWLLTVGLLIVSIVIHLVKGLDVEESLLSGVLLFHLLVMRKTFTAKSDRPSIAQGIRVLLGALLFTLAYGTAGFYILDRGFEVNERAVNFDWDDAIFQTFAMFFTADNAGLVPKTRFANFFADSIYAVGTVTLGYALLMLLRPVLLRDSASISERNKAKEVVAKYGRTTLARLALLQDKSYYFSPSGKSTIAYVPKGRGAIALGDPIGPAEDRKEAILGFQEFCERNDWYPAFYQTLPQDLEIYSTLGFRVVQIGEEAIVNLKTFTLKGKSNQNLRTAINRLTKAGYQIEFYEPPLSSELMRQMKLVSDEWLQMVQGAEKKFSVGWFDEAYVRETRAVAIYTPDGRISAFANMISAGDGVVGVDLMRRRTEVENGTMECLFASMLQHCQALGYQEFDLGLSALAGVGEAEKSGRLEKVLIYLSDHLSKFYNFKGLHSFKDKFGPRWEPRYFVYPSLGSLPDVVVALIRADSGDRLLDYLRPGS
>NC_019729.1|WP_015178369.1|5819783_5821010_+|glycosyltransferase-family-4-protein
MHIAWLGKKSPFCGNVTYSREVTNALLDRGYQVSFLHFAQEADSLDRNSTGWNMANGSWGKGIAQTSYTNSLSPASCNEVSLPCHYKSQIYTIPTLKSRTVLMKSLRRLKPDVVHASLTLSPLDFLLPEICQELNLPLVATFHPPFDRKLRNLTSGTQHLMYQLYAPFLANYDSTIVFSQIQRDILVKLGVPQERVAVIPNGVDAVKYSPGPSGLKSELKADRIFVYQGRIAQEKNVESMLKAWKHCNFGPGNVLAIVGDGPLAASLQLFYGEDDGIVWLGFVAQEERRIEILRGADVFILPSLVEGLSLSLLEAMACGLACLATDAGADGEALEEGAGIVLNTQRVRSQLQTLLPLFCDHPELAMLLGQKARQRAMERYTLSQNITELEKLYAEILQKQRVPVRGLA
>NC_019729.1|WP_015178368.1|5818185_5819757_+|MFS-transporter
MMRLSDSDLRISVLAVTHHKMEERENFPDFDSYPLLADRQWSNVPDPEMDKYPTTPAPDWNNGKSQKSEAIPAVPTADLAAELSEAVAEIPEQETGFLPVLKNRNFLALWSGQVFSQLADKVYLVLTIALVASRFQAPDQTISRWVSAIMIAFTIPAVLFGAAAGVYVDRWSKKAVLVATNLLRGGFVLTLPVLLWLSDGWELGQLPLGFCLLLLVTFLVSTLTQFFAPAEQSVIPLIVERRHLLSANSLYTTTMMASVIIGFAVGEPLLALADTLFTNLGGGLGIGKELVVGGSYAFAGVLLLSMKTGEKNEVEHEPPHPLADLREGLRYINDQPKVRNALIQLIILFSIFAALAVLAVRLAEILPGMKASQFGFLLAAVGVGMAAGATTVGYLGHKFSHSQLSLIGSVGMAFALMALSAFTHHLWLSVLFITLLGLFASLVGVPMQTTIQAETPEEMRGKVFGLQNNATNIALSLPLALAGVAETFLGLPTVFLALAGLAIAGGVLTWYISRSTNSKVDRI
>NC_019729.1|WP_015178367.1|5817085_5817961_+|DNA-repair-protein-RecO
MTRTYKATGINLKSAPMGESDRVLTILTREFGLIRAVAPGVRKHRSTIGGRSELFVVNELLIAKGRSLDKITQADTVQSHPGLSRNLGKLSAAQYLAELAIASALSDEPQEELFWLLGEHLSRLERLSDRTEIQSAAVLMAHLCHGIFHLLALAGLAPQVQVCCATRHPLIPNFTDPNWQTGFSIPSGGTFSLSELANLEAELSSEIGSLYKSASRSRQTNSSKHLTNFEIDAKELAALQQLASPELGEGIADRTTWVSVENILRQYAQYHLGCTIRSGTSIDTYLESFEF
>NC_019729.1|WP_015178366.1|5816145_5816826_+|deoxyribose-phosphate-aldolase
MAANQPDIDIAPFIDYGLIDPTATPEQVEHCCQQAERFGFVTVCVYPAYVRQAVDLLHGKRPKVCTVIGFPTGASTSTVKLYEALEAAENGAVELDVSVNLGLLKAGRIDAFHRELAQICEETNLTIKAIIESSLLSDAEKQLAAQICMEAGAAYIKTNTGFFGPAKVEDVRLLKEVTKGRIGIKAAGGIRTHEQALDLVVAGATRLGTSRGPELIRQRDNLDKSH
>NC_019729.1|WP_015178365.1|5815365_5815728_-|hypothetical-protein
MNHLELEQEIGKMARAMMTRNSLIGKDLIADLRGRLSVDSLAALMIVSIERLIWHDCESVIWSLSYLIPADVMEEIRRITALIVCQRLMGQGFLLGKDFSIDATGQLLLSDRAKTAVVVA
>NC_019729.1|WP_015178364.1|5813988_5815011_-|tetratricopeptide-repeat-protein
MNLIQNLEAAWYYHLGSRHLEANDDHGALANFNRALKLQSDHYKAWFGRGMALGKLERHLEALKSFDEALAVEPNASFGWHNRAIALGKLGRPLEALNSFDRALEFSPCAASIWHNRGLTLIDMGLYEKAVLSFDRSLNLYPEAAWAWYNRGNALLELKLYYQALNSFDRAIEFKPDDAKAWYNRGIAANSMGLYKQAVASFSRSIALQPGRAEAVGERRVALEKLVGLNQRNGKFTPTSERSLEDYLIWYNRGVELARKGCYSEAIACYETVLEIKPDFANAFYNKACCYALLGFADLALDNLQRAVEFIPNLYRELALADSDLSCIWKQERFEALIQG
>NC_019729.1|WP_015178363.1|5813152_5813899_+|hypothetical-protein
MKKLILLTGMLLMMTAKSVFASPVAPKFEPSELMAASEITETVNKPVTSESVPNLEPIERMSTSEIRETINQPTTYIFEGIKGRELTLSLWAGQLKAELYSPNGENMGVIEKADNQWIGQLPESGIYRVRVTPKGETSSFVLGRDFNAKWTYRPDRAIPLAFKETQATIKLKMSGYQIQPITVQGKQGQTIMVTASNKNLDLAIESPSGQLLDQGEGQTFAQLPESGTYRVIVVAKRPVKPSIKVSVQ
>NC_019729.1|WP_015178373.1|5824522_5825434_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MTILTILGGGAWGSALANLGGKKGSRVNLWSRSSSVNLESVITGADVVVSAVSMKGVGATVDRLLALELSPSTIIVTVTKGLDPASTRTPSQIWQNAFPNNSIVVLSGPNLSEEIQQGLPAATVAASLDLAAAKQVQNIYSSDIFRVYVNEDPLGTELGGTLKNVFAIAAGVCDGLQLGTNAKSALLTRALPEMIRVGVRLGARAETFYGLSGLGDLLATCNSPLSRNYRVGFGLAKGKSLEQILQELQSTAEGVNTTNVLIDLANQRGIEVPVSRQVYRLLNGEITPEQAVLSLMERTLKPE
>NC_019729.1|WP_015178374.1|5825485_5825764_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAKLDGLQTVLDFLKGLQPKIAAQIAKKVLALNVDPLPNDSKQLIGYPGYYRVDSGEYRIIYSFNPEEDLVEIILVGKRNDDEVYKKLERLF
>NC_019729.1|WP_015178375.1|5825750_5826020_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MQSYTLAEVCNPQGTVFNRAAVEPVLLTDKSQPSHVIMSADAYQRLIERLMELEDMLLGSSAKSALSQSQMVGTKTFVETLQQLANGET
>NC_019729.1|WP_015178377.1|5826363_5826669_-|DUF4090-family-protein
MSSETNSAAQSTTGADAIDVAIASGIDFDGTPIPQAKLDLYKQVMGLEAGRQRSGVSNTMRSRIVRIGVKHIGQEELDKMLVAANFAPLKEKEIAFYYGGK
>NC_019729.1|WP_015178378.1|5826894_5830071_-|DEAD/DEAH-box-helicase-family-protein
MNLTDYPWRISYSSNENNPIADFYIPALECALQYDRKSGFFNSAILSKVAQGLGAMLHNQGRMRLIMGCQFSPQDLQAIQQGYALRDAVTMRLDTDLQPPQTFAQLKHFEILSWLIQNSYLDIKIAVPLKSNGLPIDTASLLDRQHIFHEKVGIFTDCNGAQLAFSGSNNESLSGWESNVESFHVYCAWEGGRDAERVSEEIFRFEQLWNNLSPNVRVFEVPEAVKNKLLKYAPSSKPVWNRESEFNAPLPPRAGLFRGNHGGMGGHGGTAPTKPSVGAVPPCPPCPELSADYAKFEPLLNLYASPSCLDYCLKSVPIKPWPHQIKILRRVAANFPKSFLIADEVGLGKTIETGLILRYLLVSQKVKRVLILAPASIQPQWHEELREKFNLHFWSYSKGELKNAYGERSQSGEENIWNSQNLILASSHLVRRSDRAKQLLDAQPWDLVILDEAHHARRQSPQNRKETPNRLLQLMQQLREKSRSLLLLSATPMQIDAIEVFDLLQLLGMRGHWSYGENFCNYFSTLSDKPDRQTLNFWQQMSVDYFQQGGSPCARLQEYLQKGDRLLYYKLRDVWEKNQRFNPKQVAEDTDFIAASRQYLTVNTPLKDLMFRHTRDTLRQYYQRGLLDRDIPHRAVRDNAISLENNREVPLYLAVSNYVRHFYNLAQKDNRKALGFLMTLYRKRLTSSFYAIRESLQRRLEGISITEDDFNDLDDADDVILAGMESYFEPADPEEIKYLEDLLYQFENTGEDSKLSHFITILRQELIQRESAIVFTQYTDTMDYLRTALQQLYGAQIACYSGRGGELYQNGEWRTFPKEQIKTKFREGIIKILLCTESASEGLNLQTCGVLINYDMPWNPMRVEQRIGRLDRIGQIYDTVRIHNFYYDGTVEAKVYKKLRDRIDAFQTVVGNLQPILATVPTFIEQAVMSADPEEEGVLLGEFDRVLDAPPPGPALDEMVAMDVESDLQEIRQPLQPTSLFPETIENFFVNSLILKQIGATFDRSENRTWQLNYKSRDYAVTFYPDIFDENASLQLMSFGNPLFEEMLNAIAPRPNCA
>NC_019729.1|WP_015178379.1|5830090_5830273_-|hypothetical-protein
MNPEQPALSPLHQKIDAGVKMAIAQAIEKHRRLGQSISIWQDGKVVTLSADEIPPQQIPK
>NC_019729.1|WP_150111601.1|5830551_5833308_-|DUF1156-domain-containing-protein
MPVNLLNEQVYYEHGGNPFKGLHRWYSRKPLSFSRASVLGSILPADISLEEFEYLLGLEPGKEIKLYKTPPSSVRIKKVHDYCEKVWGNRTPTILDAFAGGGSIPFEAARYGLNVLASDLNPVAVVTMKAAMEYPLKFGPDLQEDIDKWVQWVGDEAEKRLAEFFPSLPGETVQNYLWAHTVVCPSCQSVVPLSPNWWLYKRPEKQNLHKWCAVKPIPNLEQKRLDFELVKGKKGKDTTIKTDAGEYDPNTLSTLSRAVGKCCNCNAVITEQEIKLYTSVNNFGHQLYAVAYKKNQSVLEFRIPANLDFYGLQKAQDYLNQTYAEFIIKGLIPNEATSTDLHNSPGNYDYGLRKYEDLFNSRQLLTLVTYVEIINEAKALLQAEYEPEKVEAISTYLALVLDRCIDHNSRLSGWHSSRAVVDRASKTHALNLTWNYPEISGTGELWNWCADAFVSEYKSLCALFGTKPHSTGLPGIEKYDPKTILINAASADSLYHIPENSVHAIITDPPYYSTIPYADLSDFFYVWMKRTLGDIFPDLFWSELTEKAREAVANPFRFRNMGASPDELAKQDYEAKMALAFSEYYRVLRDDGVMTVQFNHKESGAWDVLTKSLIDAGFEITASWAVSTENPQNLHQAQKNSVSSTVLLVCRKRDTNAAQAWWDDLRPEVANLVEQRAPEFEANDIKGIDLYLSAFGPALNVFSRSYPILNSSGEEVRPEVAFAEARKAIANYRFRKLAQTDTAGFDALTQWYFLAWDAFGAVEFPFDEARQLALAVGGFNVVDLAKVYKLIDSTSGTCKLLTPKQRLKKSAFSVNPQDFSITYLVDGLHAIIGLYQEDGDIQIVREFMKKTALTDNENFMRAIEVALKVIPRIGDEKKRIPEEKALLDLWLAMDEIKAKVVYQQMEIPFEGQLSLDLG
>NC_019729.1|WP_015178381.1|5833379_5833613_+|hypothetical-protein
MPVKRRFNLIVGWASSPPPTGKMPVPQRFNFIVEWASSLPPTVGLFDIPALRQSDFSRVGLFASPTVRQGLKPPSQS
>NC_019729.1|WP_015178382.1|5834339_5834768_-|hypothetical-protein
MQEFQLRVLPLENNNFALELYQCAYKKAGEKKRPAAKKLGRLKGNALVLARQTIYATLKANNYDPKTLSQQRQTPYILSEESGVSLAILFQSLQPLSKTERIANIAEGIMAMSNEEAHYWFGKIANGNRSNALKALRILLGD
>NC_019729.1|WP_015178384.1|5835080_5838323_-|ATP-binding-protein
MLPLIFDTCLPRDEILSGDLSLDLFAAKLRLVVEGTAPQVYQDANKFFANTFATDGIKTLIREVFGRLMKQSAGAGVVRLETSFGGGKTHDEIALWHICKQGREILGLERFTDISVIPDRPLQVAAIDGRDLDPEQGVYHSDSGLTTYTLWGEIAYQIGGISGYQLLQGSDQSGVSPGTSVLERLTGGQPTVIILDEIARYLRSAKAKQIGRSDLAEQVVAFLFSLMDLAAACDNLVLVYSLASTADTFAEETAELQETMRASARQERVLSPSTDIEIYNIVKQRVFARVSEEAAQKAASEYLAAYRNCRVNLPDGCKDASYSKAIAQSYPFHPELFNLLTKKIASIPEFQKTRGALRLFAQVVRHLWENRDGWMPMIHTHHIPIGMDGEITNDLTSRLQRSPLRNAIGADIYNPDGRPAYAQLQDGEWIAAGKPPFSTWVARSIFLHSLTQGNSSGIRLAELNLSLLTPGVDSGFVDRALKTLTQVAWYLDFDPVTSLARFKEEPSINKIITEEKEQVGRGFAKDDLRIRRDSIFAKKFFTLVSNIESPGNVDDNPDDVALCAIDFDDATVNASTDAAPELIERIFNNSGESGKFRTYRNRLLFLVANRLELESAIDNAREYKAIQNILKSQNRLADLSGSQQKELKEREGAKDMAVRVSLTNTYRHLFYPSNDQVKAPKGLMHYTFTAQDASMVKGKNNQQDVILKALKDCGKIRPEEAKPFAPAFILQKVWPAGLDSWTTKALRDAFAKDLSLNILLDAEVSMLRETIRQGLKMGNWDMKVGERLFIKTDDSVLALPETIEFSDRAVLYRRGILEPPAPKEVELSAQLMPSSAGVSPATSVDVRVRWKAKGALTVSLYQDNILVPGNFRPSDEYDATIVNNTIFRVVADYGNGETAEKATNVNLNPQVSTVRDSGNSAYVVEGLQGTLWEAKPPIIELDGTINRVFAELGDRISDYKVQGIEVLELSVDRVMDYRKLGTAIALLQRWQPQIDQTATIQTGDQFVRLEYQGALRGFQSFFSTINNLLNSPDAQAEVSLKITLEFQPALPANASDISSIKQTLDRNPVERLNLMTRVTY

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Crispr_ID: NC_019729_54

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_54

5833416-5833506

Orphan

Consensus_repeat	Method
TGGGCTTCTAGCCCGCCCCCAACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_54

>merge|NC_019729|54|5833416-5833506|CRISPRCasFinder
TGGGCTTCTAGCCCGCCCCCAACAGGCAAGATGCCTGTTCCACAAAGATTTAATTTTATTGTGGAATGGGCTTCTAGCCTGCCCCCAACAG

>NC_019729|54|53|5833416-5833506|CRISPRCasFinder
TGGGCTTCTAGCCCGCCCCCAACAG	GCAAGATGCCTGTTCCACAAAGATTTAATTTTATTGTGGAA
TGGGCTTCTAGCCTGCCCCCAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178390.1\|5844697_5846098_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178389.1\|5843904_5844639_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381154
NC_019729.1\|WP_015178378.1\|5826894_5830071_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|197276
NC_019729.1\|WP_041623419.1\|5823867_5824296_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_019729.1\|WP_015178388.1\|5842248_5843841_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237609
NC_019729.1\|WP_015178379.1\|5830090_5830273_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178384.1\|5835080_5838323_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224400
NC_019729.1\|WP_190274265.1\|5824307_5824517_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111601.1\|5830551_5833308_-\|DUF1156-domain-containing-protein	unknown	unknown	gnl\|CDD\|224657
NC_019729.1\|WP_015178387.1\|5840771_5841785_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NC_019729.1\|WP_015178373.1\|5824522_5825434_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237771
NC_019729.1\|WP_015178385.1\|5838442_5839408_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|235918
NC_019729.1\|WP_015178386.1\|5839654_5840575_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NC_019729.1\|WP_015178371.1\|5822765_5823686_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NC_019729.1\|WP_015178391.1\|5846099_5846600_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NC_019729.1\|WP_015178392.1\|5846924_5847275_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NC_019729.1\|WP_015178377.1\|5826363_5826669_-\|DUF4090-family-protein	unknown	unknown	gnl\|CDD\|372561
NC_019729.1\|WP_015178375.1\|5825750_5826020_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019729.1\|WP_015178382.1\|5834339_5834768_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178374.1\|5825485_5825764_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178389.1\|5843904_5844639_+\|response-regulator-transcription-factor	gnl\|CDD\|381154	cd19927, REC_Ycf29, phosphoacceptor receiver (REC) domain of probable transcriptional regulator Ycf29. Ycf29 is a probable response regulator of a two-component system (TCS), typically consisting a sensor and a response regulator, that functions in adaptation to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Ycf29 contains an N-terminal REC domain and a LuxR-type helix-turn-helix DNA-binding output domain. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	3.18478e-44
NC_019729.1\|WP_015178378.1\|5826894_5830071_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|197276	cd09179, PLDc_N_DEXD_a, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	2.34615e-68
NC_019729.1\|WP_041623419.1\|5823867_5824296_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.06214e-37
NC_019729.1\|WP_015178388.1\|5842248_5843841_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|237609	PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.	0
NC_019729.1\|WP_015178384.1\|5835080_5838323_-\|ATP-binding-protein	gnl\|CDD\|224400	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only].	5.19211e-29
NC_019729.1\|WP_150111601.1\|5830551_5833308_-\|DUF1156-domain-containing-protein	gnl\|CDD\|224657	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].	1.47398e-109
NC_019729.1\|WP_015178387.1\|5840771_5841785_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.88988e-155
NC_019729.1\|WP_015178374.1\|5825485_5825764_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	5.30282e-13
NC_019729.1\|WP_015178386.1\|5839654_5840575_-\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NC_019729.1\|WP_015178371.1\|5822765_5823686_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	5.4582e-23
NC_019729.1\|WP_015178391.1\|5846099_5846600_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	7.18152e-70
NC_019729.1\|WP_015178392.1\|5846924_5847275_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.92003e-38
NC_019729.1\|WP_015178377.1\|5826363_5826669_-\|DUF4090-family-protein	gnl\|CDD\|372561	pfam13319, DUF4090, Protein of unknown function (DUF4090). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	1.5947e-52
NC_019729.1\|WP_015178375.1\|5825750_5826020_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.86255e-05
NC_019729.1\|WP_015178385.1\|5838442_5839408_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	gnl\|CDD\|235918	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase.	0
NC_019729.1\|WP_015178373.1\|5824522_5825434_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0

>NC_019729.1|WP_150111601.1|5830551_5833308_-|DUF1156-domain-containing-protein
MPVNLLNEQVYYEHGGNPFKGLHRWYSRKPLSFSRASVLGSILPADISLEEFEYLLGLEPGKEIKLYKTPPSSVRIKKVHDYCEKVWGNRTPTILDAFAGGGSIPFEAARYGLNVLASDLNPVAVVTMKAAMEYPLKFGPDLQEDIDKWVQWVGDEAEKRLAEFFPSLPGETVQNYLWAHTVVCPSCQSVVPLSPNWWLYKRPEKQNLHKWCAVKPIPNLEQKRLDFELVKGKKGKDTTIKTDAGEYDPNTLSTLSRAVGKCCNCNAVITEQEIKLYTSVNNFGHQLYAVAYKKNQSVLEFRIPANLDFYGLQKAQDYLNQTYAEFIIKGLIPNEATSTDLHNSPGNYDYGLRKYEDLFNSRQLLTLVTYVEIINEAKALLQAEYEPEKVEAISTYLALVLDRCIDHNSRLSGWHSSRAVVDRASKTHALNLTWNYPEISGTGELWNWCADAFVSEYKSLCALFGTKPHSTGLPGIEKYDPKTILINAASADSLYHIPENSVHAIITDPPYYSTIPYADLSDFFYVWMKRTLGDIFPDLFWSELTEKAREAVANPFRFRNMGASPDELAKQDYEAKMALAFSEYYRVLRDDGVMTVQFNHKESGAWDVLTKSLIDAGFEITASWAVSTENPQNLHQAQKNSVSSTVLLVCRKRDTNAAQAWWDDLRPEVANLVEQRAPEFEANDIKGIDLYLSAFGPALNVFSRSYPILNSSGEEVRPEVAFAEARKAIANYRFRKLAQTDTAGFDALTQWYFLAWDAFGAVEFPFDEARQLALAVGGFNVVDLAKVYKLIDSTSGTCKLLTPKQRLKKSAFSVNPQDFSITYLVDGLHAIIGLYQEDGDIQIVREFMKKTALTDNENFMRAIEVALKVIPRIGDEKKRIPEEKALLDLWLAMDEIKAKVVYQQMEIPFEGQLSLDLG
>NC_019729.1|WP_015178379.1|5830090_5830273_-|hypothetical-protein
MNPEQPALSPLHQKIDAGVKMAIAQAIEKHRRLGQSISIWQDGKVVTLSADEIPPQQIPK
>NC_019729.1|WP_015178378.1|5826894_5830071_-|DEAD/DEAH-box-helicase-family-protein
MNLTDYPWRISYSSNENNPIADFYIPALECALQYDRKSGFFNSAILSKVAQGLGAMLHNQGRMRLIMGCQFSPQDLQAIQQGYALRDAVTMRLDTDLQPPQTFAQLKHFEILSWLIQNSYLDIKIAVPLKSNGLPIDTASLLDRQHIFHEKVGIFTDCNGAQLAFSGSNNESLSGWESNVESFHVYCAWEGGRDAERVSEEIFRFEQLWNNLSPNVRVFEVPEAVKNKLLKYAPSSKPVWNRESEFNAPLPPRAGLFRGNHGGMGGHGGTAPTKPSVGAVPPCPPCPELSADYAKFEPLLNLYASPSCLDYCLKSVPIKPWPHQIKILRRVAANFPKSFLIADEVGLGKTIETGLILRYLLVSQKVKRVLILAPASIQPQWHEELREKFNLHFWSYSKGELKNAYGERSQSGEENIWNSQNLILASSHLVRRSDRAKQLLDAQPWDLVILDEAHHARRQSPQNRKETPNRLLQLMQQLREKSRSLLLLSATPMQIDAIEVFDLLQLLGMRGHWSYGENFCNYFSTLSDKPDRQTLNFWQQMSVDYFQQGGSPCARLQEYLQKGDRLLYYKLRDVWEKNQRFNPKQVAEDTDFIAASRQYLTVNTPLKDLMFRHTRDTLRQYYQRGLLDRDIPHRAVRDNAISLENNREVPLYLAVSNYVRHFYNLAQKDNRKALGFLMTLYRKRLTSSFYAIRESLQRRLEGISITEDDFNDLDDADDVILAGMESYFEPADPEEIKYLEDLLYQFENTGEDSKLSHFITILRQELIQRESAIVFTQYTDTMDYLRTALQQLYGAQIACYSGRGGELYQNGEWRTFPKEQIKTKFREGIIKILLCTESASEGLNLQTCGVLINYDMPWNPMRVEQRIGRLDRIGQIYDTVRIHNFYYDGTVEAKVYKKLRDRIDAFQTVVGNLQPILATVPTFIEQAVMSADPEEEGVLLGEFDRVLDAPPPGPALDEMVAMDVESDLQEIRQPLQPTSLFPETIENFFVNSLILKQIGATFDRSENRTWQLNYKSRDYAVTFYPDIFDENASLQLMSFGNPLFEEMLNAIAPRPNCA
>NC_019729.1|WP_015178377.1|5826363_5826669_-|DUF4090-family-protein
MSSETNSAAQSTTGADAIDVAIASGIDFDGTPIPQAKLDLYKQVMGLEAGRQRSGVSNTMRSRIVRIGVKHIGQEELDKMLVAANFAPLKEKEIAFYYGGK
>NC_019729.1|WP_015178375.1|5825750_5826020_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MQSYTLAEVCNPQGTVFNRAAVEPVLLTDKSQPSHVIMSADAYQRLIERLMELEDMLLGSSAKSALSQSQMVGTKTFVETLQQLANGET
>NC_019729.1|WP_015178374.1|5825485_5825764_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAKLDGLQTVLDFLKGLQPKIAAQIAKKVLALNVDPLPNDSKQLIGYPGYYRVDSGEYRIIYSFNPEEDLVEIILVGKRNDDEVYKKLERLF
>NC_019729.1|WP_015178373.1|5824522_5825434_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MTILTILGGGAWGSALANLGGKKGSRVNLWSRSSSVNLESVITGADVVVSAVSMKGVGATVDRLLALELSPSTIIVTVTKGLDPASTRTPSQIWQNAFPNNSIVVLSGPNLSEEIQQGLPAATVAASLDLAAAKQVQNIYSSDIFRVYVNEDPLGTELGGTLKNVFAIAAGVCDGLQLGTNAKSALLTRALPEMIRVGVRLGARAETFYGLSGLGDLLATCNSPLSRNYRVGFGLAKGKSLEQILQELQSTAEGVNTTNVLIDLANQRGIEVPVSRQVYRLLNGEITPEQAVLSLMERTLKPE
>NC_019729.1|WP_190274265.1|5824307_5824517_+|hypothetical-protein
MFRSSHIFHQFQEQAFRAVPQKNSMLLWNGLLARQEQAFRAVPQKKLNVIVERASSPFLRMLQHLSSSN
>NC_019729.1|WP_041623419.1|5823867_5824296_+|NUDIX-hydrolase
MTYRNPAPTVDIIIELADRPHRPIVLVERRNIPYGWAIPGGFVDYGEAVETAAKREALEETSLNVELIEQFYVYSDPNRDAREHTISIVFLASATGEPQAADDAKNLQVFESWQIPDRLCFDHDRILRDYWRYRHYGLRPRL
>NC_019729.1|WP_015178371.1|5822765_5823686_-|esterase-family-protein
MPKWLGKVLGIGAGTILLLGASGYWYVFIAGAPQLDPPKVVVDANLNFELKTYKSAAMNSERTYGLILPPGYAKNPKQRYPVIFLLHGGHGDARAYQDKAAVTSVLHDLYKSKRLPPSIVITPDGNDKRGTSPLWDPQYFDGPNGKVGSAIGSELVSIVKSRYRTLEDPKFWAMGGQSSGGWGAFNIGLRYLNNFNILFSHSGYFTDRSGKANSPKYLVETLSVKDKQQLRAYLDAGEADENFLSSTQKFHEQLNGLGIANEFNKFPGGHGIVGPDVGWNYWHKHLADSLSYVGKQFKISLATQKN
>NC_019729.1|WP_015178382.1|5834339_5834768_-|hypothetical-protein
MQEFQLRVLPLENNNFALELYQCAYKKAGEKKRPAAKKLGRLKGNALVLARQTIYATLKANNYDPKTLSQQRQTPYILSEESGVSLAILFQSLQPLSKTERIANIAEGIMAMSNEEAHYWFGKIANGNRSNALKALRILLGD
>NC_019729.1|WP_015178384.1|5835080_5838323_-|ATP-binding-protein
MLPLIFDTCLPRDEILSGDLSLDLFAAKLRLVVEGTAPQVYQDANKFFANTFATDGIKTLIREVFGRLMKQSAGAGVVRLETSFGGGKTHDEIALWHICKQGREILGLERFTDISVIPDRPLQVAAIDGRDLDPEQGVYHSDSGLTTYTLWGEIAYQIGGISGYQLLQGSDQSGVSPGTSVLERLTGGQPTVIILDEIARYLRSAKAKQIGRSDLAEQVVAFLFSLMDLAAACDNLVLVYSLASTADTFAEETAELQETMRASARQERVLSPSTDIEIYNIVKQRVFARVSEEAAQKAASEYLAAYRNCRVNLPDGCKDASYSKAIAQSYPFHPELFNLLTKKIASIPEFQKTRGALRLFAQVVRHLWENRDGWMPMIHTHHIPIGMDGEITNDLTSRLQRSPLRNAIGADIYNPDGRPAYAQLQDGEWIAAGKPPFSTWVARSIFLHSLTQGNSSGIRLAELNLSLLTPGVDSGFVDRALKTLTQVAWYLDFDPVTSLARFKEEPSINKIITEEKEQVGRGFAKDDLRIRRDSIFAKKFFTLVSNIESPGNVDDNPDDVALCAIDFDDATVNASTDAAPELIERIFNNSGESGKFRTYRNRLLFLVANRLELESAIDNAREYKAIQNILKSQNRLADLSGSQQKELKEREGAKDMAVRVSLTNTYRHLFYPSNDQVKAPKGLMHYTFTAQDASMVKGKNNQQDVILKALKDCGKIRPEEAKPFAPAFILQKVWPAGLDSWTTKALRDAFAKDLSLNILLDAEVSMLRETIRQGLKMGNWDMKVGERLFIKTDDSVLALPETIEFSDRAVLYRRGILEPPAPKEVELSAQLMPSSAGVSPATSVDVRVRWKAKGALTVSLYQDNILVPGNFRPSDEYDATIVNNTIFRVVADYGNGETAEKATNVNLNPQVSTVRDSGNSAYVVEGLQGTLWEAKPPIIELDGTINRVFAELGDRISDYKVQGIEVLELSVDRVMDYRKLGTAIALLQRWQPQIDQTATIQTGDQFVRLEYQGALRGFQSFFSTINNLLNSPDAQAEVSLKITLEFQPALPANASDISSIKQTLDRNPVERLNLMTRVTY
>NC_019729.1|WP_015178385.1|5838442_5839408_-|threo-3-hydroxy-L-aspartate-ammonia-lyase
MSAHFCAQNPLSVCFADVEAAANRLHGKAFKTPVLTSETFNKRTNSQVFFKCENFQRTGSFKFRGACNALMQLSEAEKQRGVLTFSSGNHAQAIALAARLLEIPATVVMPADAPKVKQEATRGYGAEIILYDRTQVSREELTAKIGAERHLTIIPPYDDARVIAGQGTAALELIAEVGELDLLLVCCGGGGLLSGCAIAAKTLSPQCKVMGVEPEQADDAARSFRTKTLQTVTNPDTIADGARTPSLGKLTFPLVLHYVDDMATVSEEAIRSTMFFMWERMKIVVEPTGVLAAAALLSGVVKAENARVGVIVSGGNVDFSH
>NC_019729.1|WP_015178386.1|5839654_5840575_-|ornithine-carbamoyltransferase
MDSLKGRDLLSLADLSIDELNYLLDLAASLKSGMVKLKRNKVLGLLFSKASTRTRVSFTVAMYKLGGQVIDLNPNVTQVSRGEPLVDTARVLDRYLDILAIRTFEQKDLATFANYAKIPVINALTDDEHPCQVLADLMTVKECFGKLKGVTLTYLGDGNNMANSLMLGCAMTGMNVRIACPQDFQPNAEIVEKAKNIAKGKTEVTVTADAEAAVKDAQVIYTDVWASMGQEEEAKLRIPLFEPYQVNEQLLKLADRNAIVLHCLPAHRDEEITDAVIEGSQSRVWDQAENRMHAQQALLASILESD
>NC_019729.1|WP_015178387.1|5840771_5841785_-|tRNA-dihydrouridine-synthase-DusB
MLALSPELKERLATPLKIGDFEVKSRVLQSPLSGVTDLVFRRLVRRYAPDSMMYTEMVNATGLHYVKQLPRIMEVDPNERPISIQLFDCRPDFLAEAAQKAVAEGADTVDINMGCPVNKITKNGGGSSLLRDPETAEAIVRAVVEAVDVPVTVKTRIGWTDKEINILEFAKRMEDAGAKMITVHGRTRSQGYTGPAKWEWIRRVKEVLSIPVIANGDIFSVEAAMRCLEETGADGVMCSRGTLGYPFLVGEVDYFLKTGVEKIAPTPIERLECAKEHLRALWEYKGESGVSQARKHLTWYAKGFPGAGELRGVLAVVETVEQGCDSIDRAIEQLPAS
>NC_019729.1|WP_015178388.1|5842248_5843841_+|glucose-6-phosphate-isomerase
MDAAALWQRYQDWLYYHSGLGLYLDISRMGFDDAFAAALKPKFDKAFKDMAALEAGAIANPDENRMVGHYWLRNPDLAPTPELKQEIVAGIAQVEEFVKKIQNRDIKPPFAPQFTDIISIGIGGSALGPQFVAEALSPDIPPLAIHFIDNTDPAGIDRILNKIKDKLASTLVITISKSGGTPEPRNGMIEVQKAFAAQKLDFAKQAIAITGVDSQLDKLAKSEGWITTFPMADWVGGRTSELSAVGLLPAALQGIDIRAMLDGAKVMDEATRTTEIKDNPAALLAMSWYFACNGRGEKDMVVLPYKDSLLLFSRYLQQLVMESLGKEQDLDGNTVHQGIAVYGNKGTTDQHAYVQQLRDGVPNFFLTFIEVLQDRQGISPEVETGVTSGDYLSGLLQGTRQALYENHRDSITVTIPQVNPETVGALIALYERAVGFYGSLVNVNAYHQPGVEAGKKAAAAVLDLQQRVLQVLKDAQKPLSVAELAKKAGRPEQIETIYKTLRHLAANGRGVALEGKLGQPATLTASYQEN
>NC_019729.1|WP_015178389.1|5843904_5844639_+|response-regulator-transcription-factor
MPLTILVADDDFATRLSITDYLEITGYSVIAAENGKQALGLVDEFQPHLIVTDITMPEMDGYDFVRRVRTRPAFRLLPVIFLTERTSTEERIRGYQMGCDNYLAKPFELQELGAVIRSLLDRYALIAQAPSRTPELEPTPTEARSRANDKPEADFLTQKSNTGDSLRDSSASRASPSQNAPTLTQRERQVLDLLTEGLSNIQIGSRLNLSPRTIEKHVSSLFRKTDSNNRAELVRFAMEHHLVR
>NC_019729.1|WP_015178390.1|5844697_5846098_+|hypothetical-protein
MVNNYLKNQKILYAAALAASIIFCIAMTSMGITKYYSVLQGGENYNDFPTSGFSLIRLIINGSYLIATVTYIIWLIQKKQTSSSFLDICKYAIPFLGLALIAYPQSSDIYTYLHYGAMSLHNINPYLNSSDTFVSNLSPFLHWLQTSTYGPVSLLFFWVSALALPISPLLAVYIFKIICVLVHALNAYLIWRLLTSYENRHLITMAYLVNPMLLNEQITNAHLDVLVANTSIVLIGCIYYQRYVFAILAIWVGFLVKTLPIIWLPLVFAFLCKERRWRDLAASVLLSLLIVAVITYTFMPTVSAWRSVLNPATAGATARSFHHALNLFLNFWPNVSVETRESILSFLKYFAYLSWIVYYTGTLIKLLFRKKYSEINLVSDIGWTTLTLFLFATPWLMPWYPSILLPIAALSINSPHFVLTSLTFSLSPSLILGAGSGTTVISLVTSFVSVVPPTALLIFGRKKALF
>NC_019729.1|WP_015178391.1|5846099_5846600_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MTKLLFVCLGNICRSPSAENIMNHLIEQAGLSDRITCDSAGTASYHVGSPPDRRMALAARKRDIELLGEARQFTRKDFENFDLILAMDRDNYRNILALDPAGKYKDKVRLMCDFCQKYDLKEVPDPYYGGPEGFDRVIDLLLDASEGLLEYVVSLKKLTVGGQQSI
>NC_019729.1|WP_015178392.1|5846924_5847275_-|YbaB/EbfC-family-nucleoid-associated-protein
MTKSGQGFGFGLGKMKELTEAFKKAQQVQEGAKKLQEELDVMEIEGTAGGGLVKVFLSGNQEPRRVEISPDALGEGAEVVSELVTVAMQDAYAKSTMTMREKMEELTGGLNLPGFG

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Crispr_ID: NC_019729_55

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_55

5851097-5851196

Orphan

Consensus_repeat	Method
AAACATAAAATTGGCGCGATGTCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_55

>merge|NC_019729|55|5851097-5851196|CRISPRCasFinder
AAACATAAAATTGGCGCGATGTCTGTTGTGAAGCGAGAGTTTTCTAATAAACGAGCTTATGGTTAAAAGCGTACAAACATAAAATTGGCGCGATGTCTGT

>NC_019729|55|54|5851097-5851196|CRISPRCasFinder
AAACATAAAATTGGCGCGATGTCTGT	TGTGAAGCGAGAGTTTTCTAATAAACGAGCTTATGGTTAAAAGCGTAC
AAACATAAAATTGGCGCGATGTCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178398.1\|5852126_5853146_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|180962
NC_019729.1\|WP_015178397.1\|5851219_5851936_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_019729.1\|WP_150111603.1\|5865138_5868606_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_041622720.1\|5855236_5856232_+\|DUF288-domain-containing-protein	unknown	unknown	gnl\|CDD\|308795
NC_019729.1\|WP_015178400.1\|5853816_5854770_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_019729.1\|WP_015178394.1\|5848444_5850001_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_019729.1\|WP_015178405.1\|5861522_5862203_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_015178389.1\|5843904_5844639_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381154
NC_019729.1\|WP_015178393.1\|5847337_5848294_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_019729.1\|WP_015178388.1\|5842248_5843841_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237609
NC_019729.1\|WP_015178387.1\|5840771_5841785_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NC_019729.1\|WP_015178386.1\|5839654_5840575_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NC_019729.1\|WP_015178391.1\|5846099_5846600_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NC_019729.1\|WP_015178392.1\|5846924_5847275_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NC_019729.1\|WP_015178406.1\|5862728_5864993_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|274008
NC_019729.1\|WP_015178404.1\|5860361_5861357_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NC_019729.1\|WP_015178390.1\|5844697_5846098_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111604.1\|5868662_5868887_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178385.1\|5838442_5839408_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|235918
NC_019729.1\|WP_015178403.1\|5856327_5860347_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178398.1\|5852126_5853146_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|180962	PRK07403, PRK07403, type I glyceraldehyde-3-phosphate dehydrogenase.	0
NC_019729.1\|WP_015178397.1\|5851219_5851936_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	2.85352e-60
NC_019729.1\|WP_150111603.1\|5865138_5868606_+\|FkbM-family-methyltransferase	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	9.33496e-23
NC_019729.1\|WP_041622720.1\|5855236_5856232_+\|DUF288-domain-containing-protein	gnl\|CDD\|308795	pfam03385, STELLO, STELLO glycosyltransferases. This domain family is found in Metazoa and in Virdiplantae. Two of the family members are characterized in Arabidopsis thaliana and named STELLO1 (STL1) and STELLO2 (STL2) respectively. They are Golgi-localized proteins that can interact with CesAs (cellulose synthase A) and control cellulose quantity. In the absence of STELLO function, the spatial distribution within the Golgi, secretion and activity of the CSCs are impaired indicating a central role of the STELLO proteins in CSC assembly. Point mutations in the predicted catalytic domains of the STELLO proteins indicate that they are glycosyltransferases facing the Golgi lumen. STL homologs are present throughout the plant kingdom, but STL proteins are distinct from distantly related proteins in nematodes, fungi and molluscs.	4.50207e-10
NC_019729.1\|WP_015178400.1\|5853816_5854770_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	6.43014e-161
NC_019729.1\|WP_015178394.1\|5848444_5850001_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_019729.1\|WP_015178405.1\|5861522_5862203_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.96171e-10
NC_019729.1\|WP_015178389.1\|5843904_5844639_+\|response-regulator-transcription-factor	gnl\|CDD\|381154	cd19927, REC_Ycf29, phosphoacceptor receiver (REC) domain of probable transcriptional regulator Ycf29. Ycf29 is a probable response regulator of a two-component system (TCS), typically consisting a sensor and a response regulator, that functions in adaptation to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Ycf29 contains an N-terminal REC domain and a LuxR-type helix-turn-helix DNA-binding output domain. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	3.18478e-44
NC_019729.1\|WP_015178393.1\|5847337_5848294_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.56567e-152
NC_019729.1\|WP_015178388.1\|5842248_5843841_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|237609	PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.	0
NC_019729.1\|WP_015178387.1\|5840771_5841785_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.88988e-155
NC_019729.1\|WP_015178386.1\|5839654_5840575_-\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NC_019729.1\|WP_015178391.1\|5846099_5846600_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	7.18152e-70
NC_019729.1\|WP_015178392.1\|5846924_5847275_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.92003e-38
NC_019729.1\|WP_015178406.1\|5862728_5864993_+\|FkbM-family-methyltransferase	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.69436e-23
NC_019729.1\|WP_015178404.1\|5860361_5861357_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.28687e-06
NC_019729.1\|WP_015178385.1\|5838442_5839408_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	gnl\|CDD\|235918	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase.	0
NC_019729.1\|WP_015178403.1\|5856327_5860347_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.03193e-19

>NC_019729.1|WP_015178394.1|5848444_5850001_-|UDP-N-acetylmuramate--L-alanine-ligase
MPSSVDFSGKPFHFIGIGGIGMSALAYILAKRKLPVYGSDIKSSHITERLQGMGAHIFWSQDASNFELFQTALNGSNPDCGQQERAVSSAVAGTVGTSVATAKALQLNGNGSSAQAIPGLPQVVCSTAIHPANAEYRAALDLGCPIFHRSDVLAALIQDYQSIAVAGTHGKTTTSSLIGFMLMAAGLDPTIVVGGEVNAWEGNARLGEGHYLVAEADESDGSLVKLVAKIGIVTNVELDHPDHYDTLDQVIDTFKVFAQNCQTLVGCIDDQIVKDCLHPHVSYSLQPDSGADYTASDVEYGAESTKARIWERGAFLGEMELKLLGTHNLSNALAAVAVGRLLGLEFSAIAKAIAGFEGARRRFEVRGFHNDILFVDDYAHHPSEIRVTLAAARLRIEGSEKNPRSRRVVAIFQPHRYSRTLTFLPEFAQSFGDADLVVACDIYSAGEPNLGEISGQQVADLIAKEGGKVEFAPSLESVTQFLTKNLQPGDLALFLGAGNLNQIIPEVMAFYQQADRPD
>NC_019729.1|WP_015178393.1|5847337_5848294_-|UDP-N-acetylmuramate-dehydrogenase
MVTISNDSSVKDNRRVYSPISLRGTDCKINSQVSLAGLTSFRVGGPAEWYVAPRSMEALQASFAWAHDEGVPVTLLGAGSNLLVSDRGLSGLVVGTRYLKQVNFNAETGQLTAGAGESIPRLAWLAAKRGWKGLEWAVGIPGTVGGAVVMNAGAHRGCTADILVNARVLSPGGKVEILTPQELEYRYRTSVLQGGDRLVTEATFQLQPGFDRSQVMAETNDHFSQRRTTQPYHLPSCGSVFRNPGPKTAGWFIEQAGLKGYQIGGAQVAQRHANFILNCGSATANDIFQVIRHVQQQVEQRWSLLLEPEVRILGEFPF
>NC_019729.1|WP_015178392.1|5846924_5847275_-|YbaB/EbfC-family-nucleoid-associated-protein
MTKSGQGFGFGLGKMKELTEAFKKAQQVQEGAKKLQEELDVMEIEGTAGGGLVKVFLSGNQEPRRVEISPDALGEGAEVVSELVTVAMQDAYAKSTMTMREKMEELTGGLNLPGFG
>NC_019729.1|WP_015178391.1|5846099_5846600_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MTKLLFVCLGNICRSPSAENIMNHLIEQAGLSDRITCDSAGTASYHVGSPPDRRMALAARKRDIELLGEARQFTRKDFENFDLILAMDRDNYRNILALDPAGKYKDKVRLMCDFCQKYDLKEVPDPYYGGPEGFDRVIDLLLDASEGLLEYVVSLKKLTVGGQQSI
>NC_019729.1|WP_015178390.1|5844697_5846098_+|hypothetical-protein
MVNNYLKNQKILYAAALAASIIFCIAMTSMGITKYYSVLQGGENYNDFPTSGFSLIRLIINGSYLIATVTYIIWLIQKKQTSSSFLDICKYAIPFLGLALIAYPQSSDIYTYLHYGAMSLHNINPYLNSSDTFVSNLSPFLHWLQTSTYGPVSLLFFWVSALALPISPLLAVYIFKIICVLVHALNAYLIWRLLTSYENRHLITMAYLVNPMLLNEQITNAHLDVLVANTSIVLIGCIYYQRYVFAILAIWVGFLVKTLPIIWLPLVFAFLCKERRWRDLAASVLLSLLIVAVITYTFMPTVSAWRSVLNPATAGATARSFHHALNLFLNFWPNVSVETRESILSFLKYFAYLSWIVYYTGTLIKLLFRKKYSEINLVSDIGWTTLTLFLFATPWLMPWYPSILLPIAALSINSPHFVLTSLTFSLSPSLILGAGSGTTVISLVTSFVSVVPPTALLIFGRKKALF
>NC_019729.1|WP_015178389.1|5843904_5844639_+|response-regulator-transcription-factor
MPLTILVADDDFATRLSITDYLEITGYSVIAAENGKQALGLVDEFQPHLIVTDITMPEMDGYDFVRRVRTRPAFRLLPVIFLTERTSTEERIRGYQMGCDNYLAKPFELQELGAVIRSLLDRYALIAQAPSRTPELEPTPTEARSRANDKPEADFLTQKSNTGDSLRDSSASRASPSQNAPTLTQRERQVLDLLTEGLSNIQIGSRLNLSPRTIEKHVSSLFRKTDSNNRAELVRFAMEHHLVR
>NC_019729.1|WP_015178388.1|5842248_5843841_+|glucose-6-phosphate-isomerase
MDAAALWQRYQDWLYYHSGLGLYLDISRMGFDDAFAAALKPKFDKAFKDMAALEAGAIANPDENRMVGHYWLRNPDLAPTPELKQEIVAGIAQVEEFVKKIQNRDIKPPFAPQFTDIISIGIGGSALGPQFVAEALSPDIPPLAIHFIDNTDPAGIDRILNKIKDKLASTLVITISKSGGTPEPRNGMIEVQKAFAAQKLDFAKQAIAITGVDSQLDKLAKSEGWITTFPMADWVGGRTSELSAVGLLPAALQGIDIRAMLDGAKVMDEATRTTEIKDNPAALLAMSWYFACNGRGEKDMVVLPYKDSLLLFSRYLQQLVMESLGKEQDLDGNTVHQGIAVYGNKGTTDQHAYVQQLRDGVPNFFLTFIEVLQDRQGISPEVETGVTSGDYLSGLLQGTRQALYENHRDSITVTIPQVNPETVGALIALYERAVGFYGSLVNVNAYHQPGVEAGKKAAAAVLDLQQRVLQVLKDAQKPLSVAELAKKAGRPEQIETIYKTLRHLAANGRGVALEGKLGQPATLTASYQEN
>NC_019729.1|WP_015178387.1|5840771_5841785_-|tRNA-dihydrouridine-synthase-DusB
MLALSPELKERLATPLKIGDFEVKSRVLQSPLSGVTDLVFRRLVRRYAPDSMMYTEMVNATGLHYVKQLPRIMEVDPNERPISIQLFDCRPDFLAEAAQKAVAEGADTVDINMGCPVNKITKNGGGSSLLRDPETAEAIVRAVVEAVDVPVTVKTRIGWTDKEINILEFAKRMEDAGAKMITVHGRTRSQGYTGPAKWEWIRRVKEVLSIPVIANGDIFSVEAAMRCLEETGADGVMCSRGTLGYPFLVGEVDYFLKTGVEKIAPTPIERLECAKEHLRALWEYKGESGVSQARKHLTWYAKGFPGAGELRGVLAVVETVEQGCDSIDRAIEQLPAS
>NC_019729.1|WP_015178386.1|5839654_5840575_-|ornithine-carbamoyltransferase
MDSLKGRDLLSLADLSIDELNYLLDLAASLKSGMVKLKRNKVLGLLFSKASTRTRVSFTVAMYKLGGQVIDLNPNVTQVSRGEPLVDTARVLDRYLDILAIRTFEQKDLATFANYAKIPVINALTDDEHPCQVLADLMTVKECFGKLKGVTLTYLGDGNNMANSLMLGCAMTGMNVRIACPQDFQPNAEIVEKAKNIAKGKTEVTVTADAEAAVKDAQVIYTDVWASMGQEEEAKLRIPLFEPYQVNEQLLKLADRNAIVLHCLPAHRDEEITDAVIEGSQSRVWDQAENRMHAQQALLASILESD
>NC_019729.1|WP_015178385.1|5838442_5839408_-|threo-3-hydroxy-L-aspartate-ammonia-lyase
MSAHFCAQNPLSVCFADVEAAANRLHGKAFKTPVLTSETFNKRTNSQVFFKCENFQRTGSFKFRGACNALMQLSEAEKQRGVLTFSSGNHAQAIALAARLLEIPATVVMPADAPKVKQEATRGYGAEIILYDRTQVSREELTAKIGAERHLTIIPPYDDARVIAGQGTAALELIAEVGELDLLLVCCGGGGLLSGCAIAAKTLSPQCKVMGVEPEQADDAARSFRTKTLQTVTNPDTIADGARTPSLGKLTFPLVLHYVDDMATVSEEAIRSTMFFMWERMKIVVEPTGVLAAAALLSGVVKAENARVGVIVSGGNVDFSH
>NC_019729.1|WP_015178397.1|5851219_5851936_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MGKIAILGGTFDPVHWGHVLVAETAASQFALDRVIWVPDRSPPHKWRPDLASFEQRREMLALAIADRPDFLISPPEANPSESSFAIDTLLYLQKLYPGDRRWYWIIGSDALLTLPKWHRCGEIARLCDWLVAPRPTQGDRVTAESGEIGGLSEWGDSPGGKPLDAAGDRMQVQANAVGRRVAEQMALLDVEIRWEVLSMAAIEISSSHIRRCCAERIDLRYLVPEVVGTYIAAHQLYQ
>NC_019729.1|WP_015178398.1|5852126_5853146_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MIRVAINGFGRIGRSFARCWLGRENSQLELVAINDTSDPRSNAHLLRYDSMMGTLKNVDISADENSITLNGKTVKCVSDRNPLNLPWKDWGIDLIIEATGVFVDQAGASKHITAGAKKVLITAPGKGSEVGTYVMGVNDDTYKHSDYTVISNASCTTNCLAPVLKVLHENFGIIKGMMTTTHSYTGDQRLLDASHRDLRRARAAAMNIVPTSTGAAQAVALVIPELKGKLNGIAMRVPTPNVSVVDFVAQVEKKTFTEQVNQVFKEAASGSMKGILEYNDLPLVSCDYRGSDASSILDSSLTLVMDGDMVKLLAWYDNEWGYSQRVVDLAELVAERWEA
>NC_019729.1|WP_015178400.1|5853816_5854770_+|GDP-mannose-4,6-dehydratase
MKKALISGISGQDGAYLAKLLLDRGYEVCGTSRDAQMSSFGNLTRLGIRDRVKLESMSLNDFRSVLQVLAKIEPDEVYNLAGQSSVALSFEQPVETLESIATGTLNLLEAIRFTGGKIKLYNASSSECFGDTRGNPADENTPFRPRSPYAVAKATAFWEVANYREAYNLFACSGILFNHESPLRPERFVTQKIVSVVCRIAAGSSEKLHLGNISVQRDWGWAPEYVEAMYLMLQQEEPDDYVIATGVSYPLEEFVQTAFVSAGLDWQEHLVTDASLYRPTEIAVGRGNPGKAKQKLGWEAKYKMPDVVRMMVEARMV
>NC_019729.1|WP_041622720.1|5855236_5856232_+|DUF288-domain-containing-protein
MKSLVITTINKPTAALFKYRDILLDLGWKIIVVGDKKTPRDFDLPGAEYFNVEQQCEEFGELASLIPMNHYSRKNLGYLYAMRMGAEAIAETDDDNIPYDDKYPNFLPSLVKTPAVDVKGAVNVYSYFTSKKIWPRGLPLDKVNSFVDENLATEKEVTCYVQQGLADLDPDVDAIYRLTVGDENIKFEPHKKLSLSPGCYSPFNTQNTLFDKQAFPLMLLPIGVSSRVTDIWKSYIAQRLLWCMNSSVLFLSPSVYQLRNEHNLMKDFSEEIPLYTQVHNLIDLLENFTSDASDACELMIEMYAYLNRNGFLGEIEVRLCELWIEEVKKYV
>NC_019729.1|WP_015178403.1|5856327_5860347_+|tetratricopeptide-repeat-protein
MTKKFLYLVQTDGELPSHYSNINHENADVLYLSWKHPRPGDIYFPNSTWTQGRNKLLEAAKQLQGDYLYYIFLDDDIEFVAGDWRIFEALLLEYQPGIATPQVTFYPTKFDDSVEVQIVYAFDAVFNAFHRDVVADNVLLPYLEKFDEESWLLSQLILIHMAGVCYHEKVWQFNHVKVTQVKHRPYPKGSASDIIQKEIWLKENIFQDNELVTSYFKDFQTALEMEVLVVEPPRKNYKIEKSFCVNNLKSSEEIWFNIQSSKGEQMLADDQRIVESNRDEAMGHCQLAEVHYSQGKWEEASVAYRRAIELYPHWEFYCKLSESLGKQGDWEDAIAACRHIFKLKPDFSQKCFLDSLATITSFRIEPEQLNIISGQKIAQECPPQITSLAGNEGFVFYGPYLSFHDGLYRVCVGFEFPELSAQQGMENSETVGFKFDVVTEAGNCVWYKTDVCTSQKQLEFFVELIDAKQTEFRFLATGVTFSLNFIELSLVYQPRENSADSYYLNLGNTLLQEADKLDKALAACSRAAELNPDYREGAIAAYQHAVSKRSQGTDYFNLGMLLAQQNQLDAALSCYQKALEIQPDQTQAYSELQGILARAYHNLAIRHAEQGGIEEALACFQKAPQKQPSAGEIYEQIWKGLNKLSPLDETNPYYQTQIEPETAYQYFSKTCHYKNIILESLTDDDIIYLENAGLSLANLELMKQDSAALQSIYINSLGCEQTTDLGQKVTKTFSGVDYQQSIVDTGYIYSICPVTGKILRSNQSFYVQLFNFLPTGIYRFAGGETFYLMFGCHHGVRLGVYFPKFELIVRFYNDPLSTDYPGVVNELKSGAVSFWREFQSYISSKESKREVAAVVGWLNNLGHYFWNDLTGIQHLYENGTFPKVDKYLIRDCNFLEVGDIFPEIPANDIVRISDRWSLFKTILDNHYMAVRLTEMVVKEPLAKRIYEASIKKCSQSFLQEVEKAKTHFPLLWINIRSHNKVWSSQVEGYANIINNLYQDYPNLGLVFDGFSTEKNTVEQILALVPPTVKFYNALDCAIHETIVWAHAVDVYIVVIGSGLTLVTWLANKPGVAHGNTVHSESSGWWANVRENAVPPVFIPVESIVDLDASHWAHCDYDFDWKILDGEVNKIVKELTREVKSPQSDPAQNQSAAINLRELAESFLAEGKLDEAVSVCKQALDIQPKFALGCKTLGNVFQAKGEFEEAKRWYTQAIEIQPDFAQGLANLGTVCAQQQQWPEAIAAYQKAIAIQPNFAGFYRNLARVFSQIGKPEDAADCWYAALILEPSKATAEEYLYLGNTLVEQQKLDRAIICYRRAIYLNPNFSEAQDKLRKIMAVVEE
>NC_019729.1|WP_015178404.1|5860361_5861357_-|methyltransferase-domain-containing-protein
MAILEQNENLILAIDHSWSDDCGLGIQGWIVGKKEGVLDEVVVGAGDTFVPISAWYPRPDVAAAYPQYNPNPNCGFIVYLPRIAKHQLTFQAKAQGITYSKNVTFAGSQPSLYDLATFTNDDDGIFLDFINLVNNNNLRVLEIGSRIVSPGTSSKRSLFSGAASYTGFDYYPDANTDVVGDAHKLSQYFSSQKFDAIFSTSVFEHLAMPWVVAMEINKLLAVGGITFHTTHFAWPLHETPWDFWRFSDEGLKVLFSQALGFEVIKSHLYVPLRMHLDTMIQGQETLTTQAAFGGVAILAKKVAEINSDKFRWDVTLTDILTSESHYPKPKA
>NC_019729.1|WP_015178405.1|5861522_5862203_-|class-I-SAM-dependent-methyltransferase
MDSWQVRRDIAFQYLSGEGIEVGALHIPLEVPAGVKVHYVDRMPVSELRKQYPELATVNLVEADIVDNGETLSSIADNSWDFVIANHMIEHCENPIGALENFLRVLKPGGLVYMGVPDKRHTFDIDRPLTSLDHLIRDYKEGPEWSKLGHYEEFIRLVAKPPEEQVAARIQHLLDIDYSIHFHVWTSETFPELLEYCQQQLGFNFTIELFQENSQEIVIILRKTAN
>NC_019729.1|WP_015178406.1|5862728_5864993_+|FkbM-family-methyltransferase
MRVEACCQRILSYVLPLVDEKREGICIDVGVGTFAFYCEMFSMLGFKTIAVEPLPVEGVRVLCQYDSITLIEACLSDVNGTKTIHLGNVAAGCDSNYASLEADWFGVSTETREVQSLTLSKLLLNFNAQKVTCLKLDIEGAESTVITKLGELPKAWLPSVVMFEYGGGDSKEKGQYGWSPKYVSATMECIRALKECGYNCSIMIDNALDTEAKIFELQSSTLEPDSIFYPNGGYGNIIAFRDFNIAQDEVAKVCAPYNETTPPSDGSGNNKNVITISGTEELELSKFQLHQTREELEQCKALLQQIQGEAQQYQSQLHQTQEVLEQFQDRMQQAETLLQEYQGQLHSTQAELEQSQSQLHSTQAELEQAQSQLHSTQAELEQSQSQLHSTQAELEQSQSHLHSTQAELEQSQSQLHSTQAVLEQSQSQLRSTEAVLEQSQSQLHQNRAELAHKNSQLHQSEWELERTRFQLHQTQAELAQSQAELAQCNSQVEHIQLEAERLGSQIGQVQGELEQSQSKLRSSSMEWKRAHSQLVQVIGELEQSQAQQRQTEAILQQSQSQNHQLQHELKRLYSQLVQVQEEPQHYQSQLVQVREESQHYQSQLVQVREESQHYQSQLVQVQEESQHYQSQLVQVQEESQHYQSQLVQVQEELDRSHFQQYAVSYRGVENQMPYTLLVWDAWYAYQSGDLKKMQERLQESLKITPLSRTESVVNWLDSFAKFSSEKGHGFDSYALTNSEEWKRLMQQRVTVSKR
>NC_019729.1|WP_150111603.1|5865138_5868606_+|FkbM-family-methyltransferase
MVEIISVHLPKTAGSTFRQILIQVYGSEQVFCDYFLDGFTEKVESRPVTHALEWISPQHRVIHGHFPVSKYKEYFPEAKWIIWLRNPILKLISYYFFQKGIPATDDSPLIRHIQETQMDIFEFAELPAIKYWSAPSIISGMKLSDFYFVGIQDFFKEDMEDLKKKLGWSEMEVSVFNENPYPKYQNLLQEMLDDSKLMNNLEHILSADMELYQEALNLREKRRGESKAASVNQHKLELSKKESSLEQIQIDLERSQSKLQQIQADVERSHLQPPQHQIKKEIEIDEYILQGQLNDQKLLTVVDDLVKQKLTDKAEGILSKILKQNSSNGEKLIEVLSGKGDWQTLWLMAQAAKKIGKINLVDKACAAVESINPQFWFAREYPNHARGYYSQCEQDKVIEKFFLDYPPKNKIFVEVGACDGVHYSNVRRLYETYGWTGLCIEPVKRNFEKLAQSYQNTSVKCIRAAVGLEEGELDINVGINPDIPEWQSDVSTFLESETLRWQEEYGMLWEKEKVSIQRLTTILDENGIPEIDFISIDTEGFDFDVLKSLDFSRFRPSMIVVEYGKDRQQIISYLAELGYSLMFDNGQDLFMVRLNHLFSEICPFLPATKAYTGGSGNPPYAEIQHTTEHYFHEFIGKSANEVGCIVIVGTHLGYEIDTFLQNYPNAEIHAFEASQRYFSLLLERFAGSRRVFCHNYAVSEENGTAVFYETTIDGTGSLLPMKIQEDQDQGLTTFGASPAEAYTVATVTLDSFAPLAGKKIDLLWCDVQGAELKVLEGAKQTLKRCSSLFLEVWLYRTMYQDQCQLSNLEKYLAEHSIYLSSIGLNQIGGGQGDGFWLKSNEIQQKEILDALNSRKKIVALIRQESYRELQLEDGGTDALSKEVRQLDSQPEETEEELKRSQSQTKQHQNPGGFEQFTTKLQQVQEELQPIKDELELRQIQYQKTQEELAHTKSQLIEALTQLREMEGAAAPLNQLAELYLVQGKLEDAISVCEQALKIRPTFAPAYKTLGNVFQAQGKLDEAKSWYIRALEIQPDFAQALANLGTIHAQQQQWQEAIASYQKAIAIQPHFAGFYRNLAKVFSQIGKPDEAVECSYAAVILEPQTTAEEYFNLGNTLLEQGKQERAIVCYRRAVYLNPSFSEAHDKLKEIMSVVGE
>NC_019729.1|WP_150111604.1|5868662_5868887_-|hypothetical-protein
MCVDESWSDDYDIGIRGWIVSKKRSLEQVEICLGNTCVPITSWHPRPDIAIALPQYYNEKCGFVVHLNRTALKV

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Crispr_ID: NC_019729_56

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_56

5969579-5969734

Orphan

Consensus_repeat	Method
AAGCCCCCCCTTAGCAAGGGGGAGTTGGAGGGGTTATCAA	PILER-CR

2 spacers

The CRISPR arrays of NC_019729_56

>merge|NC_019729|56|5969579-5969734|PILER-CR
CCCCCCCTTATCAAGGGGAGGAAGAAGAGTTATCTCAATTCCTCCCTCTTAAGCCCCCCCTTAGCAAGGGGGGGTTGGGGGGGTTATCAAGATTTGAGGAAGAAGCAAACCTCTCAAAGCCCCCCCTTAGCAAGGGGGAGTTGGAGGGGTTATCCA

>NC_019729|56|11|5969579-5969734|PILER-CR
CCCCCCCTTATCAAGGGGAGGAAGAAGAGTTATCTCAATT	CCTCCCTCTTAAGCCCCCCCTTAGCAAGGGG
GGGTTGGGGGGGTTATCAAGATTTGAGGAAGAAGCAAACC	TCTCAAAGCCCCCCCTTAGCAAGGGG
GAGTTGGAGGGGTTATCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178498.1\|5980253_5980736_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_015178494.1\|5976036_5976627_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015178485.1\|5963549_5963786_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|238126
NC_019729.1\|WP_015178482.1\|5959211_5959394_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178487.1\|5965444_5966233_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NC_019729.1\|WP_015178481.1\|5958400_5958838_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178495.1\|5976704_5977211_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178496.1\|5977500_5979084_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NC_019729.1\|WP_015178493.1\|5975229_5975961_+\|PaeR7I-family-type-II-restriction-endonuclease	unknown	unknown	gnl\|CDD\|309617
NC_019729.1\|WP_015178497.1\|5979268_5980159_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NC_019729.1\|WP_015178491.1\|5973235_5974015_-\|photosystem-II-S4-domain-protein	unknown	unknown	gnl\|CDD\|132113
NC_019729.1\|WP_150111607.1\|5971296_5971497_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178486.1\|5964012_5965347_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178480.1\|5956777_5958280_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|225125
NC_019729.1\|WP_150111564.1\|5966477_5967544_-\|ISKra4-like-element-ISOni2-family-transposase	unknown	unknown	gnl\|CDD\|273844
NC_019729.1\|WP_015178492.1\|5974186_5975233_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223931
NC_019729.1\|WP_015178483.1\|5959765_5961379_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369367
NC_019729.1\|WP_051041609.1\|5961728_5961947_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178490.1\|5971652_5973131_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178484.1\|5961993_5963460_+\|cobyric-acid-synthase-CobQ	unknown	unknown	gnl\|CDD\|234838

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178498.1\|5980253_5980736_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.03245e-15
NC_019729.1\|WP_015178494.1\|5976036_5976627_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	7.86645e-45
NC_019729.1\|WP_015178485.1\|5963549_5963786_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|238126	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.	1.16805e-10
NC_019729.1\|WP_015178487.1\|5965444_5966233_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	5.73339e-98
NC_019729.1\|WP_015178492.1\|5974186_5975233_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|223931	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair].	1.10119e-39
NC_019729.1\|WP_015178497.1\|5979268_5980159_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	3.59165e-96
NC_019729.1\|WP_015178493.1\|5975229_5975961_+\|PaeR7I-family-type-II-restriction-endonuclease	gnl\|CDD\|309617	pfam04555, XhoI, Restriction endonuclease XhoI. This family consists of type II restriction enzymes (EC:3.1.21.4) that recognize the double-stranded sequence CTCGAG and cleave after C-1.	1.28972e-118
NC_019729.1\|WP_015178480.1\|5956777_5958280_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.78601e-32
NC_019729.1\|WP_150111564.1\|5966477_5967544_-\|ISKra4-like-element-ISOni2-family-transposase	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	0.00353166
NC_019729.1\|WP_015178496.1\|5977500_5979084_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NC_019729.1\|WP_015178483.1\|5959765_5961379_+\|hypothetical-protein	gnl\|CDD\|369367	pfam07444, Ycf66_N, Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria.	1.33813e-43
NC_019729.1\|WP_015178484.1\|5961993_5963460_+\|cobyric-acid-synthase-CobQ	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NC_019729.1\|WP_015178491.1\|5973235_5974015_-\|photosystem-II-S4-domain-protein	gnl\|CDD\|132113	TIGR03069, RNA-binding_S4_domain-containing_protein, photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium. [Energy metabolism, Photosynthesis].	1.42094e-136

>NC_019729.1|WP_150111564.1|5966477_5967544_-|ISKra4-like-element-ISOni2-family-transposase
MTPSDQEQLKVYLKAAAEILYRNTAPSELESFDSIEKSLRQKMLEEVGPELGNFFFPAVSGIQTGKPRKIKSIVGSLEITDNQAKYFGLKAYSQFSPMMEKCCLLISANESYQMAEKDLEIFTGIKVSHSTLQRLVKRQEFELPTSKQGVQEITLDGGKVRLRNDTKGEGCYWKDYKAICLDNVYSGASFQNNQNLIDWTNSQKLRHPMYCLGDGHAGIWKIFQEIGDTEQRQEILDWYHLKENLYKVGGSLKRLKLAENMLWQGKIDEVINLFKEMKKQAFKTFCNYLETHRCRIVNYQYYKEESISSIGSGTVESIIKRIGFRVKISGAQWKIESVPSILSLRCAYLNGQLSI
>NC_019729.1|WP_015178487.1|5965444_5966233_+|SDR-family-oxidoreductase
MPTALITGASGGIGAAFAAELAKRQHNLILVARSEDKLQQLAAKLQQQFNIWVEIIVQDLSAPGAGTAVFDTVVKKGWTVDLLVNNAGFGDYGVFADRPLAKQLTMVQLNIVALVELSHLFLQGMRERKSGSIINVASIAAFQPMPYLSIYAASKAFVLSFSEALWAENKDLGIRVLCLCPGPTESDFAAVAEFPKALASSSGQKLVPAAEVVRDALKALEKNESNVVTGGIPNQIIVNMPRLMPREVLVKSVEKLFRAKDE
>NC_019729.1|WP_015178486.1|5964012_5965347_-|hypothetical-protein
MARLTDRAFEILRAEIDKCAAADSLGGEVYRRMVIKRLEKLRSQNGTFASREEIRDTFKDEFPNFSEQVLKAAVKANRPPGLFGKIIFAGSVLGSAAGIIWLINLPFPMIRWPVAKTMPILLLPSFMSMDRNYRQAIALVEQSDQLINKATAVADFDLGEIKAKEAQKHLDALPVWFLGYYPKRYCSFFSCSWRFTLDEFQAARKNVGRMEAQIFQQKNAFTQLNQVEQTLNAAKQQYQQAKTAADRQKATVNWQSAIDRLNQIPAETLAGETAKKTLKAAERDFQAMGGVATGSVQADNLIEAAKEFALSAAVASQKPPHPAAQWEQIAELWQEGINRLKLIPVDNPGYLDAQTKLAEYQKNLGTTQIRLEAEKDSAKALQAAKSLLANLQKDVNSQNPGYSLSQLQEIINQLESVKPGTTVYPESQKWLQSARKKQQEWQKN
>NC_019729.1|WP_015178485.1|5963549_5963786_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTKVCFLPDNVTVEAEPGELLLDVAKRAGVSIPTGCLMGSCHACEVEIDDGDTICACISGIPSGKKQVTINLYVDPTW
>NC_019729.1|WP_015178484.1|5961993_5963460_+|cobyric-acid-synthase-CobQ
MKAIMVVGTTSHAGKSLLVAALCRIFSRRGWRVTPFKGQNMALNSYVTAAGGEIGYAQAVQAWAAGVAPWVEMNPILLKPQGDMTSQLIVKGRAIANVRASQYYEQYFDLGWQAIRDSLEFLCQEFDMIVCEGAGSPAEINLKHRDLTNMRVAKYLKARTLLVVDIDRGGAFAHIIGTLELLDPDERALIKGFIINKFRGQKSILDPGLTWLEERTGIPVVGVIPWIDEVFPSEDSLDLLDRRSPNSQTDINISVIRLPRISNFTDFDPLESETSVTVKYVSPKDTLGHPDAVILPGSKTTISDLHVLRQTGMAKAIQNYLVAGGTVMGVCGGFQMLGQSITDKEGIEGEKGEFPGLGLLPLKTAMAPNKIARQRIVTSNYPQPGLPVSGYEIHQGKTQILESDLTQPLFDDASLGIVNTSQSIWGTYLHGIFDNGAWRRAWLNHLRQQRGLRALPTGIPNYREHRETLLDSLADTVEKHLDIKHILG
>NC_019729.1|WP_051041609.1|5961728_5961947_+|hypothetical-protein
MSFSTPSQQSTVNSQQSTVNSQQSTVNSQQSTVNSQQSTVNNQQSTVNNQQSTLNNQQSTINNHGRCNRNRY
>NC_019729.1|WP_015178483.1|5959765_5961379_+|hypothetical-protein
MLAYILALAVGLGSFSIYMAAFFFPEVHRKSDFTWSGVGLFYALILWACAGRITGALLLGQMAGVAMLGWFAWETLTLRRQVTPVAEQTPIPQSANLAAAGVPFAGLFAKKKEPAAKKPKFVRSPKPKTDVVPAPSVDKGEVKLEEQPAIPPIAESIAESAIAPDLKIPDSKTPAISEIPVFSVETPAAETSQPPAESAASSFTPLPLPLEISEIAVAPSVEPAEAQPEPQQQPEADDFDEETEWRTAVKQSQAAAAAAAAPTPPNPPQPAKKSGGFASLFGNIKNSLGGMLGRGAGKNKSDATPQTPKPSATPESIAPESQITATPAPGIDQVLESELAEAAAEVAAETSNIVVETSLGVPFPTDVEAMADLMATETASSEKIGETPIEDRSSAQTQTPLAAVGEPEAAAGVPEAEAPAVSLETQTPLAAVGEPEAAAGVPEAEAPPASIEMTVVEMVSVAPVEMEASGESELSAQVEAVSVTVISIESTGEELSSEADKTELSPPNHPAPNLVETAKPATESKSENLSGEDKPSS
>NC_019729.1|WP_015178482.1|5959211_5959394_-|hypothetical-protein
MLEKLLLAAGLTLSLQIFPGLSTSAKLPKNLVLRSTDRPAQTVKLPLVAVPAGITPNVQS
>NC_019729.1|WP_015178481.1|5958400_5958838_-|hypothetical-protein
MGLSDILLNENHRDNFVDDCVKLIDQQVAAASGLGGLALKAAYSTVKGIRADYCAQVVDQLLPEISIALDPMWTEAKNNGNPVEYLAQRKGEVADELLQISDKRVEKSTRAMVKGAYAKLRPSAKTYVENGVPDLAEIINKHSAA
>NC_019729.1|WP_015178480.1|5956777_5958280_+|sulfite-exporter-TauE/SafE-family-protein
MQYKMNRFFKLFLLFFLTISLLLTTSTRPVYSHWSDLSVAEIVVNDLQTEITLTFPTGLTNFADDNRDSQLQSAEIRSHQTQLEKFFSQQIRITNSSNIQGSLAVKPLEIAAKTASLIQQPNTHSTLILDYTWPAPSQNTTPGLPDSISISKSEKLRINYNLFLPGVVTASCQATIVQAGAVKSFVFTPQNREFLLAGNESIWDSGWSLLLAVAGAFVWGCVHAMSPGHGKTIVGAYLVGSRATPIHALFLAATTTITHTAGVFAVGGITLFASNLINPEKLDPWLSLISGLLVAFIGLNLLLQKIKTRLVVRTEVIKKIKSKVFNKNWFLRNKVVTAECEEPVNLLSRGTWEREFKPVKPDISHHYHHHGDGRIHSHLPPGADGSAITWKSLLALGISGGLLPCPSALVMLLSASALGNVGLGMTLVVAFSLGLALVLSAIGLILVYAKRNFDKLPKQITAVKFLPAISAMFVMFLGLGITGQAMLKILAANQWVIGNG
>NC_019729.1|WP_150111607.1|5971296_5971497_+|hypothetical-protein
MSSDNLHKPAPPNDRNAIAHSPNFSQIPSHANLRNPVSDCIFRTQPKFVSETGFLATYQKGRSHIP
>NC_019729.1|WP_015178490.1|5971652_5973131_+|hypothetical-protein
MTEPPQIKNPSITLYPFHLRDDSDEGYGQVARNAQSLWENLADNVGKEFNINELKSLRDKLICYKDGLYYPDGEQENLTNGKLLIPDGGKTLKFPQIIQPDHHKLDGSIYALRIHDTYTADLTFYYQNATIKVADLTRLNPQGCLLPNAIQPSLGQTLLLYAEPAVYDTYRKLADESVKAFVQDKQPSQVEFRAEGKLFGSPIFEYDSREDDATKRCHFLVWLQENSQTLKFATPTFNSYLMNLLCSRAKIVFVYGEARKKYRKAQQIVSELEKKLPEFSQIEREQDRQVKLQKLKQLLAEIRIKMFDCTQQVRYLQEDRNTIDTNAENYGDALTKIKGLSIPGDNLDFLKKFLDLAENKYQRQIEIDFNYLIASQDLFQQSISTVRGMVEIEQVELDREQMELYKQKEEEEKKRDRQLENIIFFVGTAIGGGQIFSAAYPLIKDKPIKWQPDFSLPLHPFAATILWSLLFGLLFGLLMLGIAVWVRKTFLR
>NC_019729.1|WP_015178491.1|5973235_5974015_-|photosystem-II-S4-domain-protein
MLPREELLKGIENRECVARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVAWGGYPQAERQRIAIARSDIPIDSASVSIAAVEIAGNFLFDTASHRDFLGAMLGTGIVREKTGDVIVLGERGAQAIVMPEMVEYLEMSLQQVRSVPVKTQRIELSELKIREPKKKEMTTVEASMRLDAVASAGFAMSRSKMADLIGSGDVRVNWKDVTQASYNVKSGDLIAVTGKGRLEIGEVAVTKKERYRVQLTRYL
>NC_019729.1|WP_015178492.1|5974186_5975233_+|site-specific-DNA-methyltransferase
MKSASLSKVNISTRLLCQEAAEPLKQALQDKSLVPEEATALLTADEQRAIPAISKNKALIQEIQNRVQGLPSFHSLLQGDSRNLIHIPDESVHLVVTSPPYWNLKEYLKNLNQLGEIADYEKFLQELDRVWQQVWRVLVPGGRLVIVVGDVCVARRRFGRHMVFPLHASIQEHCRHLGFDNLAPIIWYKIANASLEAAGNGASFLGKPYEPGGVIKNDIEFILMQRKPGGYRSPTLTARVLSVIPETLHRQWFQQIWQDIKGASTKQHPAPYPLELAERLVRMFSFAGDTVLDPFMGTGTTCVAAANWGRNSIGVDVEPTYHHLALKRMQETYGLRVVYDRTMGEVAE
>NC_019729.1|WP_015178493.1|5975229_5975961_+|PaeR7I-family-type-II-restriction-endonuclease
MTGQTPIIPDDVFQEAVQGFWDTRIAQTQAQVLAGKVDQGNRSAVTGGKQMDGFILTLTNFLLAAGVPQNHIHVKKSLTVIPGFFRPAKMYDFLVVNPEKRQLKVVIELKSQVGSFGNNFNNRTEEAMGAALDIWTAYREGVFGEAPPPPWLGYLFVLEDSPASRTRVQVAEPHFAVLPEFRGASYAKRYELFCQKMVRERHFTAACFLVTDREQVAQTPNYTEPCLELSAANFLEQLIRHAL
>NC_019729.1|WP_015178494.1|5976036_5976627_-|Uma2-family-endonuclease
MEAQTIPLHSPLELTLELTDEQFFQLCIDNRDLRFERTASGGLIIMPPTGSETGNFNIDLSYQLQSWSRQNKHLGIAFDSSTGFKLPDGTDISPDAAWVRRDRWDALTAEEKKKFAPICPDFVVELRSTTDSIEKLRAKMKVYVKNGARLGWLLDRKNRKVEISRQGSEVEILDSPATLSGEDVLPGFVLDLSDIL
>NC_019729.1|WP_015178495.1|5976704_5977211_-|hypothetical-protein
MNYLIAVLPDRIQAEAAYTALEKEGLPMKQVSILGRGYKTADEFGLIDPNQQAKKQAKLMAIWLIPFGFIAGVTFSLMTELKTFAWAGEIGDHAIGGLLGAIAAAMGSVFVGGAGGMAFGSGDALPYRNRLNAGKFLIAVKGTDDLTGKAANILQQFEPENIQGYTET
>NC_019729.1|WP_015178496.1|5977500_5979084_+|phosphoglycerate-dehydrogenase
MPKVLVSDPIDQAGIDILSQVAQVDVNTGLSAEELVRIIPDYDALMIRSGTQVTKEIIEAGNSLKIIGRAGVGVDNVDVPAATRKGIVVVNSPEGNTIAAAEHALAMMLSMSRHIPEANASVKGGKWERNRFLGVEVYKKTLGIVGLGKIGSHLAAAAKAMGMKLLAYDPFISTERADQLGCRLVELKLLMRESDYITLHIPKTPETLHLINAEVLSKMKPTARIINCARGGIIDEAALAEAIKEGQIAGAALDVYEHEPLQADSPLRTVGQNIVLTPHLGASTAEAQVNVAIDVAEQIRDVLLGLPARSAVNIPGIFPDSIEKLKPYLQLAETLGNLVSQLAGGRVDYLNVQLQGELASNQSQPVVVAALKGLLSQALRERVNYVNASIEAKERGIRVVETRDASIRDYTGSLHLSAKGTLGEHTVTGAVLGDSEIRITSVDDFPVNVSPTHHMLFTLHRDMPGIIGKIGSQLGSFNVNIASMQVGRKIVRGDAVMVLSLDDPLPEGILAEILKVPGIRDAYTVNL
>NC_019729.1|WP_015178497.1|5979268_5980159_+|50S-ribosomal-protein-L11-methyltransferase
MAHSWWEIRILCDPALEDIIFWRLERFNCRGTATEIKSNSCLMSAYLPEEQARLLDLAALSLWLRQDALCAGLPLPAMQWDLIEDEDWGSTWKEHWQPQEVGDRFLINPAWLPLPTDTDRIILRLDPGVAFGTGAHATTQLCLESLEMRLGFDDSKCVIADIGCGSGILSIGAVLLGATKVYALDTDPLAVRSTISNRLLNRVNSQQLVAELGSIDRLKEMVDEPIDGLICNILAEVIIDLIPQFTAISKPTTWGVLSGILLEQAKPIADTLEQHGWIVATLWKRQDWCCFNIRRS
>NC_019729.1|WP_015178498.1|5980253_5980736_+|pentapeptide-repeat-containing-protein
MDVEELYRRYAAGERYFPGVDLSHADLNVAEVEDLEELEPGQNDLSGINLSSANLTRADLSFVNLSGANLSSANLDSATLWGTILTGANLSDAILDYAELASDLVDVDLREASLECTQLIGTNLTRANLMGSYFAATGEGRLTFCNTIMPDGTIRNDNSS

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Crispr_ID: NC_019729_57

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_57

6082551-6082648

Orphan

Consensus_repeat	Method
GATTGGGAAAGATTGACTGAGTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_57

>merge|NC_019729|57|6082551-6082648|CRISPRCasFinder
GATTGGGAAAGATTGACTGAGTAGTAGAGGTTTGGGACTATCGATTGCGCGATTGCGCGATTGCGCGATTGCGCGATTGGGAAAGATTGACTCAGTAG

>NC_019729|57|55|6082551-6082648|CRISPRCasFinder
GATTGGGAAAGATTGACTGAGTAG	TAGAGGTTTGGGACTATCGATTGCGCGATTGCGCGATTGCGCGATTGCGC
GATTGGGAAAGATTGACTCAGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178582.1\|6082758_6083430_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111697.1\|6089003_6090410_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_019729.1\|WP_015178584.1\|6090406_6091792_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|381147
NC_019729.1\|WP_015178580.1\|6079021_6079267_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178588.1\|6096607_6096853_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237872
NC_019729.1\|WP_015178572.1\|6069113_6071588_-\|phosphoketolase-family-protein	unknown	unknown	gnl\|CDD\|235379
NC_019729.1\|WP_015178576.1\|6076073_6076517_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NC_019729.1\|WP_015178575.1\|6075696_6076068_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178574.1\|6073120_6073369_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178578.1\|6077190_6078525_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NC_019729.1\|WP_041622735.1\|6097263_6098835_+\|NAD(P)H-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235044
NC_019729.1\|WP_015178590.1\|6098988_6099588_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019729.1\|WP_015178579.1\|6078578_6079031_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NC_019729.1\|WP_015178587.1\|6095609_6096602_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270281
NC_019729.1\|WP_041622733.1\|6092054_6093065_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226651
NC_019729.1\|WP_015178577.1\|6076513_6077194_-\|Rho-termination-factor-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377850
NC_019729.1\|WP_015178586.1\|6093528_6095613_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_019729.1\|WP_015176254.1\|6073968_6075465_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_019729.1\|WP_015178581.1\|6079461_6082197_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_019729.1\|WP_015178591.1\|6099734_6101345_+\|cyclic-peptide-export-ABC-transporter	unknown	unknown	gnl\|CDD\|130262

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_150111697.1\|6089003_6090410_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.64631e-81
NC_019729.1\|WP_015178591.1\|6099734_6101345_+\|cyclic-peptide-export-ABC-transporter	gnl\|CDD\|130262	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other].	6.14958e-150
NC_019729.1\|WP_015178581.1\|6079461_6082197_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_019729.1\|WP_015178588.1\|6096607_6096853_-\|hypothetical-protein	gnl\|CDD\|237872	PRK14968, PRK14968, putative methyltransferase; Provisional.	0.00101893
NC_019729.1\|WP_015178572.1\|6069113_6071588_-\|phosphoketolase-family-protein	gnl\|CDD\|235379	PRK05261, PRK05261, phosphoketolase.	0
NC_019729.1\|WP_015178578.1\|6077190_6078525_-\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.09345e-30
NC_019729.1\|WP_015178584.1\|6090406_6091792_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.2386e-57
NC_019729.1\|WP_015178576.1\|6076073_6076517_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.18713e-11
NC_019729.1\|WP_015178590.1\|6098988_6099588_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.85867e-33
NC_019729.1\|WP_015178579.1\|6078578_6079031_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	4.72461e-11
NC_019729.1\|WP_015178587.1\|6095609_6096602_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270281	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.94818e-55
NC_019729.1\|WP_041622733.1\|6092054_6093065_+\|hypothetical-protein	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	9.00913e-10
NC_019729.1\|WP_015178577.1\|6076513_6077194_-\|Rho-termination-factor-N-terminal-domain-containing-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	4.06504e-05
NC_019729.1\|WP_015178586.1\|6093528_6095613_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	4.11795e-55
NC_019729.1\|WP_015176254.1\|6073968_6075465_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.36228e-35
NC_019729.1\|WP_041622735.1\|6097263_6098835_+\|NAD(P)H-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235044	PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit N.	0

>NC_019729.1|WP_015178581.1|6079461_6082197_-|type-I-DNA-topoisomerase
MSTLVIVESPTKARTIRNFLPSTYRVEASMGHVRDLPSSAEEIPEAVKGEKWAQLGVNVEADFEPLYVIPKDKKKIVKELKDALKDATELILATDEDREGESISWHLLQILKPKVPIKRMVFHEITREAIRDALTHCRDIDNRVVQAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQSVAVRLLVRRERERRAFRQGSYWDLKALLEKGKISFDAKLVTVGNVKVANGSDFDENTGQIIAGRRVLLLNEEQARALLSRIQNKPWTVTNLEERPVTRKPSPPFTTSTLQQEANRKLRLGARETMRIAQSLYERGFITYMRTDSVHLSEQAIEAARSCVQELYGSEYLSPQPRKYTTKSKGAQEAHEAIRPAGSTFRTPQQTGLDGIDFRLYDLIWKRTVASQMADSRQTHVTVLTQVEDAGFRSSGKRIDFPGFLRAYVEGSDDPNAALEDQEVILPALKVGDKPNCQDLEAVGHETQPPARYTEASLVKMLESEGVGRPSTYASIIGTIVDRGYAKLIANALIPTFTAFAVTTLLETHFPDLVDTGFTSRMEQTLDEIATGEAKWLPYLQKFYTGETGLATQVKEQESHIDAKVARTVVLENLPAKVCIGKFGAYLESESEEGLVKASIPQDLTPADLDPEQVEFLLKQKTEGPEKLGLHPETGEPIYVLIGSYGPYVQLGEVSETNKKPKRASLPKGTDKDSVTLDMAVSLLTLPRLLGTHPETGAKVQANLGMYGPYVVHDQGKVGKDYRSIKPPDDVLTIELDRALELLAQPKAARGRNSKATTPLKELGAHPESGEPINVYDGRYGPYVKHGDINASLSKDESVENFTLQKALDLLAAKEAAGGGKSSSKSKKSTKATAAKSETATKKTAAKKTTAKKTTTAAKTTTAKKTATATKTKKETKSS
>NC_019729.1|WP_015178580.1|6079021_6079267_-|hypothetical-protein
MIAELMVQPSYWIDREISIQKVRNLYLFKFTENLQARLEELADRKKANLLTSEEVVELASLLELDRIFTLINAKVIAASCP
>NC_019729.1|WP_015178579.1|6078578_6079031_-|HNH-endonuclease
MSVNRATRNLVRSRANFLCEYCHSAEESSSTLFTIDHILPRSIGGSDELENLALACHRCNNNRYNFVTGTDPETEQEVTLFNPRQQQWSEHFNWSADGLEIMGITPTGRGTCDRLDLNDLYHNEGAIIRARRLWIRAGWHPPSGDPRQNS
>NC_019729.1|WP_015178578.1|6077190_6078525_-|AAA-family-ATPase
MNAPATTIQAALQSLPQGASEAIVSAHFSPQFLQALGFESDEVVPEYDTNGGGIVDKAARKTIENDIFLHTKSNPYLLLELKGKDINLTEGTPGYLKTVNQLKRQLLGSNCKSAEWGIITNSSHVQLFRKHGKVIFPATQCLALDLNNVDRVVADIRKKIQAPSRALTVTIYNNKGGVGKTTTTVNLAGILTFLGKKVLVIDFDFNQQDLTSALGIPVSNGVLKAALTDKNAGLKSAVNPYNFSTKKIQLSFDIIPADNDLGNESDDKLRSFMQMRVLYKKLEFARQDYDYILIDSSPNWRFISQLAVYAADVILIPTKHNNLFSLENAATAIKKFIPAIQADKGEGNPIALPIFFNGEKITQPQLEVAQQEINNILKNAKKDKFDLLPYFYPKYTSAKKDLHIHQVPSYANIANAVFSRIPAVYRDRSAHEYYKNLAKEYFLQ
>NC_019729.1|WP_015178577.1|6076513_6077194_-|Rho-termination-factor-N-terminal-domain-containing-protein
MKISNIIGSLMHLYLDEIEPGEGTDAPEFLIKATANILKQKGGRNWLPVIVKETGEDKYQVISNSFVYAVAEEAGLERVWCIIADDSDDTITLTKILAGEDKPKINLSTASRDEIMAALQYLIEQPNSELKSVKLAVATNRIDEAPRQYWKNFEPITSLKCGITKGKKLDAIKSVFYLTPQSMPDTINDVTILRTMTTVELKAIAKKRGIAGITKMKKDALVEALS
>NC_019729.1|WP_015178576.1|6076073_6076517_+|HNH-endonuclease
MALSEQVRARVRAQAQNRCGYCRSLEMYVLGILEIDHIIPKAIGGSDEEENLWLACSLCNNYKGTQTDAFDRVTQKHVKLFNPRTQQWSQNFAWSEDATEIMGLTDCGRATVTALQLNNNIAVTVRRQWVSAGWYPQQNQVFPNRTH
>NC_019729.1|WP_015178575.1|6075696_6076068_+|hypothetical-protein
MTAQITLNLPDEVYHQAELLALQRHRTVSEILVETREIFLLPTAKPISALSDSEVITQTQLRLQPLQEQRLSELLDRQQSGTIASVELAELQALIHIYETRLLRQAQALNEAVRRGLLEPLKG
>NC_019729.1|WP_015176254.1|6073968_6075465_-|IS66-family-transposase
MLKTPALTSEPPEIAIAVEQMAQTMLSLGEWLLKQQQQLKQQQRKLAEKQQLIEEQQQEIEQLKEALSKLKNRSSSNSSIPPSADQIKKPSDKSKRKKGKKRGPKYDHPGKTRNGFGEPDHIIELQPERCPVCQAGVEAITTTPTKVQQVAELVEQPVEIREYRRPLCQCVDCGWSGYSQLPPSVIEGFSYGSRLCSVVGWLGYGGNLPWRKQEYFVEHVLGVPISQGSLAKMQRYFQQSLQPIYQQWLTYVQQPGVRCVDETTYCIDGIKYWLWVATSDRVCVLLLAPTRSSAELQQLLGQNFEGILSSDCFSAYNRQSAAAKQKCLTHLERDLEALKLSRFEANRLFAQGVGEILTTARTLHRDYHAGKLSCLQLAGNRSVIEAQLQAVLHNPPVTGWPADAQRLTNRMQRHWTEWFTFLDYPQVKPDNNDAERALRPVVVHRKVTGGARSDWGAQLVAQMFSFLETVRLQGHEAIAQLYQLLCLAGRSPPGLQFS
>NC_019729.1|WP_015178574.1|6073120_6073369_-|hypothetical-protein
MGINENLDWEEAFEYRAGLTVELKSQPGVLHKIAYYEVMMVPPIWLENDPRPRYPHEVRVVSQQPTVSNVCRISESPVLVAS
>NC_019729.1|WP_015178572.1|6069113_6071588_-|phosphoketolase-family-protein
MMLGTTEIPQLKPLSDSELHKMNAYWRAANYLSVGQIYLLDNPLLKEPLKIEHVKPRLLGHWGTTPGLNFIYVHLNRIIKAQDLNTIYIAGPGHGGPGLVANTYLEGTYSEYYSNISEDEEGIKRLFKQFSFPGGIPSHVAPETPGSIHEGGELGYALVHAYGAVFDNPDLIAAAVVGDGEAETGPLAASWHSNKFLNPVRDGAVLPILHLNGYKIANPTVLARIPRQELESLMVGYGYKPYWVEGSDPETMHQLMAATLDTAIGEIKAIQEKARTEGYSGRPQWPMIVMKTPKGWTGPKEVDGKKTEDYWRSHQVPLSEMASKPGHVQLLEDWMKSYKPEELFDEKGKLIPELAELAPKGSRRMGANPHANGGLLLRDLKMPKFEDYAVDVPKPGTVMAEATRVSGSFLRDVMKLNQENANFRIVGPDETASNRLDPVFEVTNRMWAGEILPEDDRISPDGQVMEVLSEHMCQGWLEGYLLTGRHGFFSCYEAFIHIIDSMFNQHAKWLKTTRHIPWRRPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHVINKKAEVVRIYLPPDANTLLSVTDHCLRSRHYVNVIIAGKQPALQYLDMDAAIKHCTAGIGIWEWASNDKGGEPDVVMACAGDIPTLETLAAVDILRRDYPDLKVRVVNVVDLMTLQPSSEHPHGLSDKEFDTLFTKDKPVIFAFHGYPWLIHRLTYRRTNHPNIHVRGYKEEGTTTTPFDMVVINDLDRFHLVGDVLDRVPKLSSVAAYGKQAIRDKLIEHRHYINEHGDDMPEIRDWKWPHAGAVSSEAPKETKDPAATGDQSVRSGAPG
>NC_019729.1|WP_015178582.1|6082758_6083430_+|hypothetical-protein
MTFEFDHLFILTDIGASEANRLSSFGLVEGSSRIHRGQGTTNRCFFFHNAMLELLWIHDPEEAQSEPIHQTRLWERSTNRNNGACPFGICLRPAKGSEDTVAFSSWAYRPPYLPETMSIAVGTNSDVLTEPMLFQIPFGKRPDRYSADKSQPLNHGVGFREITRVELVSPAANNPSPELQAVLETNQLKLRIGTEYFVELGFDGEVQGQQVDFRPGLPLIISW
>NC_019729.1|WP_150111697.1|6089003_6090410_+|response-regulator
MSHELRTPLNAILGFTQVLARDSSLSDVQQGQLGIISRSGEHLLALINDVLEMSKIEAGRIILNPTSFDLYYLLYSLEEMLKIKADSKGLQLCWHINSNIPQYVKTDESKLRQVLINLLGNAIKFTAKGSVTLRVAAINAKQKSPTDNELRTIRFEVEDTGHGIDPTEVDSLFEAFVQTDAGRKSQEGTGLGLPISRQFVQLMGGDITVSSTLNRGTIFSFYIQISSPKMAEVQPRQSRRRVIGLQPNQPSYRILVVDDKWESRLLLVHLLEPLGLEVREAVNGQEAIRIWETWKPHLIWMDMQMPVIDGYEATRQIKAKIQDEATPIVALTASAFEEERALVLSSGCDDFVSKPFQEEVIFAKMAEHLGVEYIYEDLPNFTSSQLEGQDLSVKEGEKTEFLRTTLAAMPADWVRQLHHGAIDADADQILSLVGTIPEYNKSFAETIADWANNFRFDKITDLTERFIP
>NC_019729.1|WP_015178584.1|6090406_6091792_+|hybrid-sensor-histidine-kinase/response-regulator
MNSLQLESHVANILVVDDTPDNLRLLSTMLRDKGYKVRGVINGQMALKAARSTPPDLILLDISMPQMNGYEVCQHLKADARTSGIPVIFLSALDRVLDKVKAFAVGGVDYITKPFHLEEVLARVENQLTIQRLQKKLHEQNARLRESEAKERKKSQQLELALQQLQHTQAQLIQSEKMSSLGNVVAGVAHEINNPISFIKGNLSPVTEYTQDLLRLVQLYEEDFPNPTAAIQEQLEAMDLTFLSNDLPKLIASMRIGADRIEEIVRSLRNFSRLDESELKAVDIHEGLESTLMILQHRLKDEAAQTIIKVVKEYEDLPKIECYAGQMNQVFMNVLTNAIDALQSQKSSANDVDDSSPIPTITICTKLLSECQVGIYITDNGPGITEDIQQRIFEPFFTTKKVGQGKGLGLSISYAIVVENHGGQLRCLSIPDRGATLEIEIPIHHSKKRFYKEDFVGYKPH
>NC_019729.1|WP_041622733.1|6092054_6093065_+|hypothetical-protein
MNLTAHFFSEKALAIVCVIAAFVVLGGKVFATAIDYAPPFKETSFYSTTISANNDLGDIYYPKPSDLNSGNYSFPIVLLLQGALVDKSFYSDYASHVARYGFVVVVPNHLRPSPFNPTSPPNLASETSQIAAVLSQMAIENKKPTSPIASVIDTQRLGLLGHSFGGAVGLSVIANKCLPELYLCQEPFTRPKELLAGAFFGANLRNPISNEFVAIANDGIAVALIQGGIDGVALPDRSHSTFDQIQTPPKALITVMGANHFSITNVNNPAGANPDRNTATLEQAVGIETIARWSALFLRANMLKDRAAFDYIYSQGDALDPNVRVTSVAVPKPSSK
>NC_019729.1|WP_015178586.1|6093528_6095613_-|SpoIIE-family-protein-phosphatase
MKRLFFNSIRTKLIVSFLVVALIPLLLLAFINKQTTEKALTDNARQALSAAANETAYRIDGFIDGNLNAVRVEAILPGLAAYLGIPPERRNGSPQEMLATETLTRLSRKDTLNIISYALLNLKGRNVLDTNTLDVGRDESGQDYFQEPLKTQLSFVSSIRQSPTIPNLVTLFFSSPVRDAKGNILGILRVTYNATSVQQLVSRKTERAGAKSLAVLLDENYIHLAHSTTPELLFKSIVPLSPNVVAQLQREGRLPKNITEELAINLPDLKQALDTKQPYLITRLTATGNNELSLLAIARLQYQPWSVLFAQPIAVALAPVEKQIQDALLLLAIIATIVTIIALAIAQLLTKPVIYLTQAVAEFTAGHLDMRVKMRSRDEIGLLARSFNSMARQIQESFETLEDKVKERTSELANANQEIITLNEKLKVDNLRLGAELNVARQIQQMILPNPHELEIDGLDIAGYMEPADEVGGDYYDVLQIDGVVTLAIGDVTGHGLESGILMLMAQTSVRTLQEIRGLDPVRFLDVLNRTLYKNVQRMNSEKSLTLAILNYSEGRISISGQHEETLVVRKNGDVERIDTMELGFPIALDDDIADFISHVLIELEPGDGVVLYTDGIPEAYNIRKKQYGLKQLCQVISQNWHKSAAGVKDAVIVDVRQHIGKQKVFDDITLLVFKRQADVTENGNLVNNIISSK
>NC_019729.1|WP_015178587.1|6095609_6096602_-|ABC-transporter-substrate-binding-protein
MSKLLNYICIFIITCWLLFACQSSQPLKVKRPSLKVSCVPFVGYTPLIVAQEKGFFKAQGVDVELSYIKHSQLLFADFSAGKYDAIALTLGDFVILSATYPDIQAVMVVDESTGADVVVAQSDIKTIPNLKGKNLGATLGDFSEVFVTEMLKTSKLTSDDVRLVKVETFEVPNRLQNNTIQAGHTWEPYLSEALKLGAHILFTSKQTPGLILDLIAFRGEVIRDRPEDIRAFVRGGLQGLSYWEANIPEGKEIVSKALNIPINTISFEGIDLTDFADNQFFFQSNSPNYIYKTAKKYADFFIRAGNVTRLPNLETLFNSSFLTPPPSLKP
>NC_019729.1|WP_015178588.1|6096607_6096853_-|hypothetical-protein
MTDSLSAYKPLILNDFNNRPDCENEFQKQAATRLVELAKVRSGKLVLDIATGTGLAAIADDALRSIGIEKISVAFSTPGMQ
>NC_019729.1|WP_041622735.1|6097263_6098835_+|NAD(P)H-quinone-oxidoreductase-subunit-N
MDFATLAAQLNAGTILPEGIVIITLLVVLVGDLIVGRSSSGWTPYAAVAGLLAAVAALCLQWDNTDTISFLGGFNSDALSLVFRGIIALTAAVTILISVRYVLQTGTALAEFIGILLTATLGGMFLSGADELVMIFISLETLSISSYLLTGYTKRDPRSNEAALKYLLIGASSSAVFLYGISLLYGLSGGETKLSAIAANLSSVNEGQSLGLVIALVFAIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLTTAFPALTEQWHFVFTALAILSMVLGNVVALAQTSMKRLLAYSSIAQAGFVMLGLIAGTEAGYSSMIFYLLVYLFMNLGAFACIILFSLRTGTDQISEYSGLYQKDPLLTLALSICLLSLGGIPPLAGFFGKIYLFWAGWQAGLYGLVILGLVTSVVSIYYYIRVVKMMVVKEPQEMSDAVKNYPEVRWNLQGMRPLQVSVVLTLVATTLAGILSNPLFNLANDAITKTPMLQSALSQVQPVVAAKIESNLVSRGD
>NC_019729.1|WP_015178590.1|6098988_6099588_+|Uma2-family-endonuclease
MLVQSKEKFYTPDEYRELEETAEFRNEYRDGQIVQMTGGSINHSQIIGNIYAFLKSALREKNARPFMSDLRLWIPRYRRGTYPDVMVVEGELVCTEGRKDEILNPVLIVEVLSKSTKDFDREDKFRFYRSIPEFREYVLVNQSEFLVAQYIKTESNEWLFREYEGESAIVSFASVEVQMSMLDIYELVVFETQETEVQE
>NC_019729.1|WP_015178591.1|6099734_6101345_+|cyclic-peptide-export-ABC-transporter
MNVIWLLLKASWLNVSIAILTGLISGGCSAMLISLINRAISDNSNGNLVWYFAGLAILALLSGFVSQFLLIYLSQEAVYNLRLSLSRGILSTPLRNLEELGANRLLATLTDDVGTLSNTIFLIPFLCVDIAVVVGCLTYLSTISGTVFVVVFCFLVLMIGTVQLLLSKMRKFFDLAREEQDILFKHFRSITDGIKELKLHSLRRQEFFTEQLQVSADASRDYNVTALNTGAVAIGVGQLLFFMLMGLLLFALPQFVPVSTPVLSAYILTSTYLMSPFQNILQRLPAIFRANTSVEKIERMGLALASQSEINSTVKPIQTAEWDRLELNRVIHSYPGEKEDSNFILGELNLKFHPGQLVFIIGGNGSGKSTLAKLITGLYIPESGEILLDGQPITDGNREWYRQHFSVIFSDFYLFERLLGMTDRDLDKQAAEYLREFHLEDKVQVKEGVLSTTALSQGQRKRLALLTAYLEDRPIYLFDEWASDQDPFFRDIFYKQLLPELKRRGKTVFVISHDDRYFDLADRAIKLDYGKVEYDR

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Crispr_ID: NC_019729_58

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_58

6125700-6130855

TypeV

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CRISPRCasFinder
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CRT
GCCGGAAAAAACCTAAAACCCTATCAGGGATTGAAAC	PILER-CR

70 spacers

The CRISPR arrays of NC_019729_58

>merge|NC_019729|58|6125700-6130855|CRISPRCasFinder,CRT,PILER-CR
TTTCAAGCCCTAGATGGGGAAATAGGTTTTTTCCGGCGCACTGGGATATCGCAGCTTTGAAACCTACTGTCAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGTCAGGAATCGATCAGAGTGTTGGAAGTATTGAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGAGTGCTCTTGCCAAAGATGTCTAAGGTTCCTTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTCAAGCTGGTTAGTCTGGCGCAGTTTTTCCCGTGCCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTATTAATCCTTTTAGCAGATATCTGGGCGCCTAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAGTCGTCGGGGTCTGGCGGTTCGTCGGTCGATTCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATTCTGATGCGCTTTCCCAGATGGGAGGATTGCTCCGTTTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATGATTGTCGATCGCAATTTGATGTTTCTGATGATTCTTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTAATGATAGGTGACTGCACGCGATTTAAATGAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTCAGCGTCAAGCGCCTTCGCCTGGTACGAATTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAATCGTTCCTTGGGACTTCCCCGCCCCGATGGGGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGGCACTTACTCTTACTACTGGCGCAAGCATCTCAAAAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATACAGAAGGCTAAAGGGCGATGGCTGGTAGTGTTTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCCTCAAAAGATAACTTGCAGCGGACTTTAAATCCTTAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGAATATATGCACCGCTTCCCCCCTAGGCAGAAAGGGTTAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTTTTCATAAGAATGGGAGGAAGCGATCGCCCTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGATTGATTCGCGCTTCCTGGGCGCGAGACTTTGCAACGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGAGATTGCGATTGTCCGTAGCGTCGCATCGCGGCCCGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTCTTCCTCTGCTTGCACCAATGCCTTGAGAGCTTCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTCAGGTTCACAGTGCAGTTCACGCGATTTGTTCTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGTTGCTTATCAACCCATTCAACAACAGCCAAAGGTTCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCACAGCGAAGGCAGCCGAGGCCCACGAACCAGAGCCCGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTAATTTTCTTGCTAACGAACCGACCACCGATGCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCCTAATTGTCCAAAAGTTGGATTAAGAACTGCCGCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTTTCGCTAAAGAAGCCTCGAAAGGCGACACGGGCGGTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGATGCGCGTGTAGGATGCGCGCCCCCCGTTGGATTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGTATCTAAACCAGGTGACAAGCAAGGAGCAAATTCTTTGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAAAAACGAGGTGACTAAAGGGTTTAAAAAATCTAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCACTTATCTTGGCTGCGCGTAATAATTATAAAAGTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGATACTTTACGGATTTTGAAAAGCGCTGCTCGATCGCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCACCTAATTTAACGGCTTTTGTTCGGTAATTCCGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCGAATGAGTGAGATTTAGTCAAGAAGTGAACCCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTTCCTGGAGCTTGTCTGTCGGTCGCTCACCTCTTGCTCCTTCGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAAATAATCCCGAAACAGCATCACATTGAAAATCGAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCTAGGAGCGATCGCACTTCTTGCACTTTTGCCCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGTTGGGCCAGATTTTCTGGCTCCGAAGTTAATGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCAAGGCAAAATACTGGATCTGTCGGCTCAAAAACTGGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGGGATGCCCTAAATTTTACGGGCAGTTAAGAGGACGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTATTTACCTCAAATTTCTTGACAGTGGCAGGACTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTCTCGAAAGCTTGGAAGATTGGTTGGAGCGAAACCCTGGTTTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTCGGCCAGGCGCATTCTTAAGCGCGGCAGCTACTGGGTATGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGGGGCGGGAGATGGCTCCCGCTGGAGTGCAGCCTTTTGTGCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCGTACTGGGGAAGGTGACCGGGCAATTCTTACCGATTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGTGCGGTATCCGCACCACAAAGTCCGCCCGATCGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTGGGTACGATAAGCCCCAGCCCGGATTACTCTAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCACCGACCGAGCCGATCGCACCGACCGACGTAGCCGCAATCAAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTAGTCAAATGTAACCTTAATTGATAGGAATAGAAGAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGGGGCCCGATTAGTTTCAGTGGCTCCCTAATCCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATTGAAAACTTTTAAATTACCTCTGTCCTCATCAAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTGAAAAAATTCTAGATGGGGCATTTTTCATATCTAGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTTGTATTTTTGGGTTAACTCATCTAAGGTTAGAATATGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCAGAGAAACCGTGTGGATGTCTGGCACAGCCGTCGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTTGCTGTTCAGTTAATTTAATATTTGTTTCAATAAAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGGCAGCTTGCATAGCCCAATCCATCGAAAACTCAATGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTTTTCTCCTGTGTTTAAATTACACACACCAAAAAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTCAAAAGTTGCGTGCTCATAGATATCTCCGGGCGAGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAAGTGAGAAAAGTCTGAGCATCAAAGGCACTAATGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTCTATCAATCATTTTAAAACAAGCAAATAATGTTTAAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATTTTATAGCCGCAACAATTGCTTGGGGGTGGCGAGTAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGGATTTGACTCAGCACAAGGTGAATATATTGGGCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGCACATCGTAGGCGATGTCGATAAAATAACAGCATTGCGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGTCAAAGCAGCCACTCCTTCACTGGCTACTGCTGTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTAAGTCAGGCATCCGTATTTCGGAATCTCGATCGAATGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAGGAGCAATGGAACTGTTTACAGTGTTTACAACAGGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCAAGCGCAAAAACTGTACCTCAAAGTATCTAGCGTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATAAAACTAGAGAGTTTCGATCGCACTCGATCGAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCGTTTTTAGCGCTTGCTGTTTTTTGTTGTCTTCTATATCATGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCATGAAGGTCATAGTTTCCACGAAATTGAAGAGAGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGAGCAAACCACTGCCGAGGTTCGCCGCCTGAAGTGGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGCTGTGGTGTGTGTTTGGGTTAAATCCTAAGCGTCGGTTGTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC

>NC_019729|58|56|6125700-6130855|CRISPRCasFinder
TTTCAAGCCCTAGATGGGGAAATAGGTTTTTTCCGGC	GCACTGGGATATCGCAGCTTTGAAACCTACTGTCA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTCAGGAATCGATCAGAGTGTTGGAAGTATTGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGAGTGCTCTTGCCAAAGATGTCTAAGGTTCCTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAAGCTGGTTAGTCTGGCGCAGTTTTTCCCGTGCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TATTAATCCTTTTAGCAGATATCTGGGCGCCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AGTCGTCGGGGTCTGGCGGTTCGTCGGTCGATTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTCTGATGCGCTTTCCCAGATGGGAGGATTGCTCCGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATGATTGTCGATCGCAATTTGATGTTTCTGATGATTCTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTAATGATAGGTGACTGCACGCGATTTAAATGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTCAGCGTCAAGCGCCTTCGCCTGGTACGAATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AATCGTTCCTTGGGACTTCCCCGCCCCGATGGGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGCACTTACTCTTACTACTGGCGCAAGCATCTCAAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATACAGAAGGCTAAAGGGCGATGGCTGGTAGTGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CTCAAAAGATAACTTGCAGCGGACTTTAAATCCTTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GAATATATGCACCGCTTCCCCCCTAGGCAGAAAGGGTTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTTCATAAGAATGGGAGGAAGCGATCGCCCT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGATTGATTCGCGCTTCCTGGGCGCGAGACTTTGCAAC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GAGATTGCGATTGTCCGTAGCGTCGCATCGCGGCCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTTCCTCTGCTTGCACCAATGCCTTGAGAGCTTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAGGTTCACAGTGCAGTTCACGCGATTTGTTCT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTTGCTTATCAACCCATTCAACAACAGCCAAAGGTTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ACAGCGAAGGCAGCCGAGGCCCACGAACCAGAGCCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TAATTTTCTTGCTAACGAACCGACCACCGATGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CTAATTGTCCAAAAGTTGGATTAAGAACTGCCGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTCGCTAAAGAAGCCTCGAAAGGCGACACGGGCGGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGATGCGCGTGTAGGATGCGCGCCCCCCGTTGGATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTATCTAAACCAGGTGACAAGCAAGGAGCAAATTCTTTG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAAAACGAGGTGACTAAAGGGTTTAAAAAATCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACTTATCTTGGCTGCGCGTAATAATTATAAAAGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GATACTTTACGGATTTTGAAAAGCGCTGCTCGATCGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ACCTAATTTAACGGCTTTTGTTCGGTAATTCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCGAATGAGTGAGATTTAGTCAAGAAGTGAACCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTCCTGGAGCTTGTCTGTCGGTCGCTCACCTCTTGCTCCTTCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAATAATCCCGAAACAGCATCACATTGAAAATCGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCTAGGAGCGATCGCACTTCTTGCACTTTTGCCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTTGGGCCAGATTTTCTGGCTCCGAAGTTAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCAAGGCAAAATACTGGATCTGTCGGCTCAAAAACTGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGATGCCCTAAATTTTACGGGCAGTTAAGAGGAC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TATTTACCTCAAATTTCTTGACAGTGGCAGGACT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTCGAAAGCTTGGAAGATTGGTTGGAGCGAAACCCTGGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTCGGCCAGGCGCATTCTTAAGCGCGGCAGCTACTGGGTAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGGCGGGAGATGGCTCCCGCTGGAGTGCAGCCTTTTGTGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCGTACTGGGGAAGGTGACCGGGCAATTCTTACCGATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTGCGGTATCCGCACCACAAAGTCCGCCCGATCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACCGACCGAGCCGATCGCACCGACCGACGTAGCCGCAATCAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTAGTCAAATGTAACCTTAATTGATAGGAATAGAAGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGGCCCGATTAGTTTCAGTGGCTCCCTAATCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTGAAAACTTTTAAATTACCTCTGTCCTCATCAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTGAAAAAATTCTAGATGGGGCATTTTTCATATCTAG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTGTATTTTTGGGTTAACTCATCTAAGGTTAGAATATG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCAGAGAAACCGTGTGGATGTCTGGCACAGCCGTCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTGCTGTTCAGTTAATTTAATATTTGTTTCAATAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGCAGCTTGCATAGCCCAATCCATCGAAAACTCAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTCTCCTGTGTTTAAATTACACACACCAAAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAAAAGTTGCGTGCTCATAGATATCTCCGGGCGAG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAGTGAGAAAAGTCTGAGCATCAAAGGCACTAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTATCAATCATTTTAAAACAAGCAAATAATGTTTAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTTTATAGCCGCAACAATTGCTTGGGGGTGGCGAGTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGATTTGACTCAGCACAAGGTGAATATATTGGGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACATCGTAGGCGATGTCGATAAAATAACAGCATTGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTCAAAGCAGCCACTCCTTCACTGGCTACTGCTGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TAAGTCAGGCATCCGTATTTCGGAATCTCGATCGAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AGGAGCAATGGAACTGTTTACAGTGTTTACAACAGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAGCGCAAAAACTGTACCTCAAAGTATCTAGCGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATAAAACTAGAGAGTTTCGATCGCACTCGATCGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTTTTTAGCGCTTGCTGTTTTTTGTTGTCTTCTATATCAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATGAAGGTCATAGTTTCCACGAAATTGAAGAGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGAGCAAACCACTGCCGAGGTTCGCCGCCTGAAGTG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTGGTGTGTGTTTGGGTTAAATCCTAAGCGTCGGTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC

>NC_019729|58|8|6125700-6130855|CRT
TTTCAAGCCCTAGATGGGGAAATAGGTTTTTTCCGGC	GCACTGGGATATCGCAGCTTTGAAACCTACTGTCA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTCAGGAATCGATCAGAGTGTTGGAAGTATTGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGAGTGCTCTTGCCAAAGATGTCTAAGGTTCCTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAAGCTGGTTAGTCTGGCGCAGTTTTTCCCGTGCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TATTAATCCTTTTAGCAGATATCTGGGCGCCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AGTCGTCGGGGTCTGGCGGTTCGTCGGTCGATTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTCTGATGCGCTTTCCCAGATGGGAGGATTGCTCCGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATGATTGTCGATCGCAATTTGATGTTTCTGATGATTCTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTAATGATAGGTGACTGCACGCGATTTAAATGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTCAGCGTCAAGCGCCTTCGCCTGGTACGAATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AATCGTTCCTTGGGACTTCCCCGCCCCGATGGGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGCACTTACTCTTACTACTGGCGCAAGCATCTCAAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATACAGAAGGCTAAAGGGCGATGGCTGGTAGTGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CTCAAAAGATAACTTGCAGCGGACTTTAAATCCTTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GAATATATGCACCGCTTCCCCCCTAGGCAGAAAGGGTTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTTCATAAGAATGGGAGGAAGCGATCGCCCT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGATTGATTCGCGCTTCCTGGGCGCGAGACTTTGCAAC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GAGATTGCGATTGTCCGTAGCGTCGCATCGCGGCCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTTCCTCTGCTTGCACCAATGCCTTGAGAGCTTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAGGTTCACAGTGCAGTTCACGCGATTTGTTCT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTTGCTTATCAACCCATTCAACAACAGCCAAAGGTTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ACAGCGAAGGCAGCCGAGGCCCACGAACCAGAGCCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TAATTTTCTTGCTAACGAACCGACCACCGATGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CTAATTGTCCAAAAGTTGGATTAAGAACTGCCGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTCGCTAAAGAAGCCTCGAAAGGCGACACGGGCGGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGATGCGCGTGTAGGATGCGCGCCCCCCGTTGGATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTATCTAAACCAGGTGACAAGCAAGGAGCAAATTCTTTG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAAAACGAGGTGACTAAAGGGTTTAAAAAATCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACTTATCTTGGCTGCGCGTAATAATTATAAAAGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GATACTTTACGGATTTTGAAAAGCGCTGCTCGATCGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ACCTAATTTAACGGCTTTTGTTCGGTAATTCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCGAATGAGTGAGATTTAGTCAAGAAGTGAACCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTCCTGGAGCTTGTCTGTCGGTCGCTCACCTCTTGCTCCTTCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAATAATCCCGAAACAGCATCACATTGAAAATCGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCTAGGAGCGATCGCACTTCTTGCACTTTTGCCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTTGGGCCAGATTTTCTGGCTCCGAAGTTAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCAAGGCAAAATACTGGATCTGTCGGCTCAAAAACTGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGATGCCCTAAATTTTACGGGCAGTTAAGAGGAC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TATTTACCTCAAATTTCTTGACAGTGGCAGGACT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTCGAAAGCTTGGAAGATTGGTTGGAGCGAAACCCTGGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTCGGCCAGGCGCATTCTTAAGCGCGGCAGCTACTGGGTAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGGCGGGAGATGGCTCCCGCTGGAGTGCAGCCTTTTGTGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCGTACTGGGGAAGGTGACCGGGCAATTCTTACCGATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTGCGGTATCCGCACCACAAAGTCCGCCCGATCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACCGACCGAGCCGATCGCACCGACCGACGTAGCCGCAATCAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTAGTCAAATGTAACCTTAATTGATAGGAATAGAAGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGGCCCGATTAGTTTCAGTGGCTCCCTAATCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTGAAAACTTTTAAATTACCTCTGTCCTCATCAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTGAAAAAATTCTAGATGGGGCATTTTTCATATCTAG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTGTATTTTTGGGTTAACTCATCTAAGGTTAGAATATG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCAGAGAAACCGTGTGGATGTCTGGCACAGCCGTCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTGCTGTTCAGTTAATTTAATATTTGTTTCAATAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGCAGCTTGCATAGCCCAATCCATCGAAAACTCAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTCTCCTGTGTTTAAATTACACACACCAAAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAAAAGTTGCGTGCTCATAGATATCTCCGGGCGAG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAGTGAGAAAAGTCTGAGCATCAAAGGCACTAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTATCAATCATTTTAAAACAAGCAAATAATGTTTAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTTTATAGCCGCAACAATTGCTTGGGGGTGGCGAGTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGATTTGACTCAGCACAAGGTGAATATATTGGGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACATCGTAGGCGATGTCGATAAAATAACAGCATTGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTCAAAGCAGCCACTCCTTCACTGGCTACTGCTGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TAAGTCAGGCATCCGTATTTCGGAATCTCGATCGAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AGGAGCAATGGAACTGTTTACAGTGTTTACAACAGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAGCGCAAAAACTGTACCTCAAAGTATCTAGCGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATAAAACTAGAGAGTTTCGATCGCACTCGATCGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTTTTTAGCGCTTGCTGTTTTTTGTTGTCTTCTATATCAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATGAAGGTCATAGTTTCCACGAAATTGAAGAGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGAGCAAACCACTGCCGAGGTTCGCCGCCTGAAGTG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTGGTGTGTGTTTGGGTTAAATCCTAAGCGTCGGTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC

>NC_019729|58|12|6125772-6130855|PILER-CR
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTCAGGAATCGATCAGAGTGTTGGAAGTATTGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGAGTGCTCTTGCCAAAGATGTCTAAGGTTCCTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAAGCTGGTTAGTCTGGCGCAGTTTTTCCCGTGCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TATTAATCCTTTTAGCAGATATCTGGGCGCCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AGTCGTCGGGGTCTGGCGGTTCGTCGGTCGATTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTCTGATGCGCTTTCCCAGATGGGAGGATTGCTCCGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATGATTGTCGATCGCAATTTGATGTTTCTGATGATTCTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTAATGATAGGTGACTGCACGCGATTTAAATGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTCAGCGTCAAGCGCCTTCGCCTGGTACGAATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AATCGTTCCTTGGGACTTCCCCGCCCCGATGGGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGCACTTACTCTTACTACTGGCGCAAGCATCTCAAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATACAGAAGGCTAAAGGGCGATGGCTGGTAGTGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CTCAAAAGATAACTTGCAGCGGACTTTAAATCCTTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GAATATATGCACCGCTTCCCCCCTAGGCAGAAAGGGTTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTTCATAAGAATGGGAGGAAGCGATCGCCCT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGATTGATTCGCGCTTCCTGGGCGCGAGACTTTGCAAC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GAGATTGCGATTGTCCGTAGCGTCGCATCGCGGCCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTTCCTCTGCTTGCACCAATGCCTTGAGAGCTTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAGGTTCACAGTGCAGTTCACGCGATTTGTTCT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTTGCTTATCAACCCATTCAACAACAGCCAAAGGTTC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ACAGCGAAGGCAGCCGAGGCCCACGAACCAGAGCCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TAATTTTCTTGCTAACGAACCGACCACCGATGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	CTAATTGTCCAAAAGTTGGATTAAGAACTGCCGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTCGCTAAAGAAGCCTCGAAAGGCGACACGGGCGGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGATGCGCGTGTAGGATGCGCGCCCCCCGTTGGATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTATCTAAACCAGGTGACAAGCAAGGAGCAAATTCTTTG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAAAACGAGGTGACTAAAGGGTTTAAAAAATCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACTTATCTTGGCTGCGCGTAATAATTATAAAAGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GATACTTTACGGATTTTGAAAAGCGCTGCTCGATCGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ACCTAATTTAACGGCTTTTGTTCGGTAATTCCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCGAATGAGTGAGATTTAGTCAAGAAGTGAACCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTCCTGGAGCTTGTCTGTCGGTCGCTCACCTCTTGCTCCTTCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAATAATCCCGAAACAGCATCACATTGAAAATCGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCTAGGAGCGATCGCACTTCTTGCACTTTTGCCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTTGGGCCAGATTTTCTGGCTCCGAAGTTAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCAAGGCAAAATACTGGATCTGTCGGCTCAAAAACTGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGATGCCCTAAATTTTACGGGCAGTTAAGAGGAC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TATTTACCTCAAATTTCTTGACAGTGGCAGGACT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTCGAAAGCTTGGAAGATTGGTTGGAGCGAAACCCTGGTTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTCGGCCAGGCGCATTCTTAAGCGCGGCAGCTACTGGGTAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGGCGGGAGATGGCTCCCGCTGGAGTGCAGCCTTTTGTGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCGTACTGGGGAAGGTGACCGGGCAATTCTTACCGATT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTGCGGTATCCGCACCACAAAGTCCGCCCGATCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTGGGTACGATAAGCCCCAGCCCGGATTACTCTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACCGACCGAGCCGATCGCACCGACCGACGTAGCCGCAATCAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTAGTCAAATGTAACCTTAATTGATAGGAATAGAAGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGGGCCCGATTAGTTTCAGTGGCTCCCTAATCC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTGAAAACTTTTAAATTACCTCTGTCCTCATCAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTGAAAAAATTCTAGATGGGGCATTTTTCATATCTAG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTGTATTTTTGGGTTAACTCATCTAAGGTTAGAATATG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCAGAGAAACCGTGTGGATGTCTGGCACAGCCGTCG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTGCTGTTCAGTTAATTTAATATTTGTTTCAATAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGCAGCTTGCATAGCCCAATCCATCGAAAACTCAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TTTTCTCCTGTGTTTAAATTACACACACCAAAAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCAAAAGTTGCGTGCTCATAGATATCTCCGGGCGAG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAGTGAGAAAAGTCTGAGCATCAAAGGCACTAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TCTATCAATCATTTTAAAACAAGCAAATAATGTTTAA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATTTTATAGCCGCAACAATTGCTTGGGGGTGGCGAGTA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GGATTTGACTCAGCACAAGGTGAATATATTGGGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GCACATCGTAGGCGATGTCGATAAAATAACAGCATTGC
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTCAAAGCAGCCACTCCTTCACTGGCTACTGCTGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TAAGTCAGGCATCCGTATTTCGGAATCTCGATCGAAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AGGAGCAATGGAACTGTTTACAGTGTTTACAACAGG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	AAGCGCAAAAACTGTACCTCAAAGTATCTAGCGT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATAAAACTAGAGAGTTTCGATCGCACTCGATCGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	GTTTTTAGCGCTTGCTGTTTTTTGTTGTCTTCTATATCAT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	ATGAAGGTCATAGTTTCCACGAAATTGAAGAGA
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGAGCAAACCACTGCCGAGGTTCGCCGCCTGAAGTG
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC	TGTGGTGTGTGTTTGGGTTAAATCCTAAGCGTCGGTT
GTTTCAATCCCTGATAGGGTTTTAGGTTTTTTCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178608.1\|6120255_6121293_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|177069
NC_019729.1\|WP_015178611.1\|6131944_6132691_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_019729.1\|WP_015178620.1\|6146923_6147685_-\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NC_019729.1\|WP_041622740.1\|6144853_6146116_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_019729.1\|WP_015178610.1\|6124488_6125691_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_019729.1\|WP_051041554.1\|6118543_6118897_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225724
NC_019729.1\|WP_015178605.1\|6116237_6116768_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019729.1\|WP_006634164.1\|6117416_6117614_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_019729.1\|WP_041622738.1\|6117898_6118537_+\|DUF3578-domain-containing-protein	unknown	unknown	gnl\|CDD\|371900
NC_019729.1\|WP_015178606.1\|6117040_6117397_-\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_019729.1\|WP_015178613.1\|6135612_6137844_-\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NC_019729.1\|WP_015178612.1\|6132790_6133690_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|180960
NC_019729.1\|WP_015178607.1\|6119576_6120023_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163410
NC_019729.1\|WP_015178617.1\|6143235_6144516_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NC_019729.1\|WP_015178616.1\|6140907_6143073_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015178609.1\|6121739_6124058_+\|DUF4101-domain-containing-protein	unknown	unknown	gnl\|CDD\|372576
NC_019729.1\|WP_015178604.1\|6115622_6116000_-\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_019729.1\|WP_015178614.1\|6137865_6139296_-\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|224512
NC_019729.1\|WP_015178621.1\|6147967_6149014_+\|peptidase-M42	unknown	unknown	gnl\|CDD\|349907
NC_019729.1\|WP_015178615.1\|6139329_6140685_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178608.1\|6120255_6121293_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|177069	CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed.	0
NC_019729.1\|WP_015178611.1\|6131944_6132691_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	5.78519e-70
NC_019729.1\|WP_015178620.1\|6146923_6147685_-\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	2.57225e-14
NC_019729.1\|WP_041622740.1\|6144853_6146116_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.32538e-177
NC_019729.1\|WP_015178610.1\|6124488_6125691_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.29844e-38
NC_019729.1\|WP_051041554.1\|6118543_6118897_+\|HNH-endonuclease	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	2.83544e-28
NC_019729.1\|WP_015178605.1\|6116237_6116768_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	8.28736e-16
NC_019729.1\|WP_006634164.1\|6117416_6117614_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	3.27056e-21
NC_019729.1\|WP_041622738.1\|6117898_6118537_+\|DUF3578-domain-containing-protein	gnl\|CDD\|371900	pfam12102, DUF3578, Domain of unknown function (DUF3578). This presumed domain is functionally uncharacterized. This domain is found in bacteria and archaea. This domain is typically between 177 to 191 amino acids in length.	2.02163e-62
NC_019729.1\|WP_015178606.1\|6117040_6117397_-\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	1.45158e-56
NC_019729.1\|WP_015178613.1\|6135612_6137844_-\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	3.30293e-62
NC_019729.1\|WP_015178612.1\|6132790_6133690_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|180960	PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.	6.40107e-86
NC_019729.1\|WP_015178607.1\|6119576_6120023_-\|hypothetical-protein	gnl\|CDD\|163410	TIGR03698, clan_AA_DTGF, clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	7.56081e-07
NC_019729.1\|WP_015178617.1\|6143235_6144516_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NC_019729.1\|WP_015178616.1\|6140907_6143073_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.86247e-50
NC_019729.1\|WP_015178609.1\|6121739_6124058_+\|DUF4101-domain-containing-protein	gnl\|CDD\|372576	pfam13355, DUF4101, Protein of unknown function (DUF4101). This is a family of uncharacterized proteins, and is sometimes found in combination with pfam00226.	1.56484e-42
NC_019729.1\|WP_015178604.1\|6115622_6116000_-\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	7.3303e-29
NC_019729.1\|WP_015178614.1\|6137865_6139296_-\|SLBB-domain-containing-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	9.8985e-30
NC_019729.1\|WP_015178621.1\|6147967_6149014_+\|peptidase-M42	gnl\|CDD\|349907	cd05657, M42_glucanase_like, M42 Peptidase, endoglucanase-like subfamily. Peptidase M42 family, glucanase (endo-1,4-beta-glucanase or endoglucanase)-like subfamily. Proteins in this subfamily are co-catalytic metallopeptidases, found in archaea and bacteria. They show similarity to cellulase and endo-1,4-beta-glucanase (endoglucanase) which typically bind two zinc or cobalt atoms. Some of the enzymes exhibit typical aminopeptidase specificity, whereas others are also capable of N-terminal deblocking activity, i.e. hydrolyzing acylated N-terminal residues. Many of these enzymes are assembled either as tetrahedral dodecamers or as octahedral tetracosameric structures, with the active site located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers.	6.3705e-103
NC_019729.1\|WP_015178615.1\|6139329_6140685_+\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.38514e-10

>NC_019729.1|WP_015178610.1|6124488_6125691_+|glycosyltransferase-family-4-protein
MQIIVEGWRFIYHSYCVANQFQLLEMLDSPRGKIELFHRDMPYIDAAWETKISLFDRPNETLLRSIKSPAVNQSADVTLRMYCPWDFSASSSAQTWVFAATEWGIVTSSVLQAMGVKSIAQTPVNSETKIITPSAWSKAGLIRSGVEADRIAVVPLGVDPQIYYPAAGDRRQSLRQSLGWSNYFIFLNIGGQTDRKGIRPLLKAFAAVVDKYPDARLVLKGSELLYPSRDEIAEACRVVLNGAERARVLPRLIYTGSQLSFAQIAEFYQAADVYVSPYLAEGFNLPVLEAAACGLPVICTAGGPTDDFTRSDFAMRIESKFTAVASDGETLFILAPEWEHLADLMQRAIEQPGIAAKARVAGPAFVAENFTWRRVVDRLLEVMGGDKKREERSIFEPIIL
>NC_019729.1|WP_015178609.1|6121739_6124058_+|DUF4101-domain-containing-protein
MLIPLDYYRILGLPIQATAEQLQQAHRDRTLQLPRREYSEVAIVARKQLLDEACAVLSDSDGRKAYDASFLAKTYDRESEAAQEAKHQRLKTSAGTATFLQDAGETAPESKALEAAPDPHTPSIEIDDNQFVGALLILQELGEYELVQKLGRPYLNNGSIAIAEGRFGDKELVRPDIVLTVSLACLELGREQWQQGQYENAARSLEAGQELLLLEGLFASVRGEMQADIYKLRPYNILELLSLPEEKVAERRRGLQILREMLQERGGIDGSGDDRSGLGIEDFLRFVQQMRKHLTSSEQQALFEAEAGRPSAVATYLSVYTLLAQGFAARQPSMIRRAKLMLMQLGRRQDVHLEKAVCSLLLGQTEEASRALELSSEKEPLAFIREHSQDSPDLLPGLCLYAEHWLQEEVFPHFRDLANESVSLKDYFADPKVQAYLEALPQDAETANEWVVVQPRSGKLSGRLQPTAGRSPAAIPPQPPTAKQGASTVTLTPVPGDASTAASGAKPQATAAAPSAVAPVSIPIATVPHPADSTAKQRRRQHSGRSGAIGHGVKGNLVDRARTKAAEITAQVKSMPPNRLALFLVAGVLSLLLLWLILSLLASAMQALSGPSLQGEQALLRLEEPPLEIPALAAAPEPSAAGPVSGEITEQSARDLVQSWLSAKAAALGPNHAVEELKQVLTEPALSRWQLMAEAQQRNNAHQRYVHKLEVSGVKTNPTNPDRAQVEAQVSEKAEVFDRSQLVSSRNENLRVRYDLIRQDGQWRIMDWQVIK
>NC_019729.1|WP_015178608.1|6120255_6121293_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MVQERTLPVFDAQSVNISRDEGLMLYEDMVLGRYFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGVIRSMRRDDTDYVSSTYRDHVHALSAGVPAREVMAELFGKETGCSKGRGGSMHMFSAEHRLLGGYAFVAEGIPVATGAAFQSKYRREALGDESSDGVTACFFGDGAANNGQFFECLNMAALWKLPIIYVVENNKWAIGMAHERATSDPLIYKKAHAFGMAGVEVDGMDVLAVREVAKEAVARARAGEGPTLIEALTYRFRGHSLADPDELRSKEEKEYWFPRDPIKKLAAELIDRTLATAEELKEIDNKIQAVIDDAVDFAEKSAEPDPSELYRFIYAEDE
>NC_019729.1|WP_015178607.1|6119576_6120023_-|hypothetical-protein
MINLDLTQASKNMGAVRVKVKLTNAIDEELVKRGLLNPNLLRVYEAEALIDTGAVRTAIPVEVCEHLGLRIRSQEIAKYADGRQETVGLTGPVIIEIEGRETIEAAMVLGDMVLIGQTVLETLDLLVDCKNQRLVPNPENPERPVLRV
>NC_019729.1|WP_051041554.1|6118543_6118897_+|HNH-endonuclease
MKKEAKNNEQKKEWFEDPTKYRLHRVTERNQTLSKKVKQLQGYECKACGFDFESRYGEIGRGYIEAHHNVPISNLSGAKIQLDPLKDFTVLCSNCHSMIHRIKPTPTLEEFRKNLQI
>NC_019729.1|WP_041622738.1|6117898_6118537_+|DUF3578-domain-containing-protein
MALRESIEKILWEYPLVSKDNFQGHSFASYVKNVVPKSISASLELPEIYSVEASAGKGSWAKVPWIAIFNKLVTESVQSGFYCVYLFRADFSGVYLSLNQGIADKRKKFGLGKSRDMVRDQAQLFKDKLGSDKLREFSEPLDLQLDSVPKKTTSRRLGLAYEAGNIASKFYSRESLPDDKELVDDVRKVLEIYFSLFEEVSLKEEADSDLFK
>NC_019729.1|WP_006634164.1|6117416_6117614_-|50S-ribosomal-protein-L35
MPKLKTRKAAAKRFRATGSGKIVRRKAYKSHLLQHKSSARKSRLSKLVVIDETNDANVRLMLPYL
>NC_019729.1|WP_015178606.1|6117040_6117397_-|50S-ribosomal-protein-L20
MTRVKRGNVARARRKKILKLAKGFRGAQSKQFRTANQRVMQALRNGYRDRKKRKRDFRRLWIARINAASRQHGTSYSRLIGNMKKANIEINRKMLAQMAIVDPATFGKVVEMANRAGA
>NC_019729.1|WP_015178605.1|6116237_6116768_-|tetratricopeptide-repeat-protein
MDSNLLIIYLSVLLAILGSTSWFVVRQILKTRKLEMSLERLENKLTVEKGTAQEYYELGSIYVDKKLYSQAIVLFQKALKAKDLEGEENQAVIYNALGFAHFGQEQYDIAIRQYKEALKLQPEYVTCLNNLAHAYERKKLTAQALEMYEQALACDPDNTTAKQRVESLRKRLVIYN
>NC_019729.1|WP_015178604.1|6115622_6116000_-|response-regulator
MTSILVVEDSWLTRRVICKILRAEGYDTWEASSGPEALEQLGTKTPNCMLLDLLMPEMEGREVLQAMRDRGYKIPVIVITADIQASTRSECMELGALAVIHKMPNSDELIGWIKKAVSVSEESTQ
>NC_019729.1|WP_015178611.1|6131944_6132691_+|dienelactone-hydrolase-family-protein
MTKTEISTKNITVPNGDLQIAAYLAQPASPGQFPAVIVIQEIFGVNSHIREVTERIAKEGYVAIAPAIYQRQAPGFETGYTPEAIKIGREYKEKTTASELLGDIQATIDYLKTLPSVKQQGFGCIGFCFGGHVAYLAATLPEIKATASFYGAGIATQTPGGGTPTIARTADIKGTLYAFFGNRDPSIPLKQVDQIAAELQKHHISHRIFRYNADHGFFCDHRGSYDATAAADSWMQVKQLFHQQLQPA
>NC_019729.1|WP_015178612.1|6132790_6133690_+|S1-RNA-binding-domain-containing-protein
MNSKSTGSQSAKASFSMDDFAKALEQHNYEFQKGQVVRGKVFEYDSNGAYVDIGGKSSAFLPIEEAALRTVTDLSEVVPLDEERDFLIIREQDADGQVTLSLRQLQIQQAWEDLIELQETGKVLQVRVSGANKGGVTVDVQGMRGFIPRSHLVDRDNLESLIGQSLSVNFLEVDREREKLVLSQRMATQSNAFKDLQIGQLVEGKVSSIKPFGVFVDLEGVSGLLHIKQVSQKYIDNLGKLFAPGQPLKAIVVDLDESRGRISLSTRVLENYPGEMVDKMADVMDTAQERSERARKTLS
>NC_019729.1|WP_015178613.1|6135612_6137844_-|polysaccharide-biosynthesis-tyrosine-autokinase
MDKKLLSSLKNDLNGQYLSVPSANYLASTPAEDDQVLDMNWVLAVIKRRLLVMGIVAASIATLSGSFVLRAAKNSITEYEGKFTVLAEPITADDRLSKLLVQAQNNSLGITDLNKIKSSVEEGSSVDYQSLSRVLKSPEVLLPLVNKLQKKYPKFDYKNLNSRLTIQRVTFLRDGKQGGTKLVDISYRDRDPKRIKYVLDETAKYYLEYMDKERLKVSKQSSDFIDRQMPPLQQKVDKLQQELQILRVQYNFNQPELRSRSLSDQLDSVTNRRLEVQAQLAESRLQYESYKKRSLTGDNRWIVDISPKSYENLMSKVNEIESQLALTSTQFYENSLPIQSLREKQQSLRALMKKEADTVLLQMQSQLKQLEARERLITNSQNLLQAKITQMPQAQRRYDDIQLKLELAKDTLKLFIEKQKALQLDAGQIEGSWQIISKPQLVTNENGEINPVTEKPTRRHLAIALVISTLLGIAIGFLVEVLNTVFHTPEEIKSATKSPLLGVIPIAKAMKIKSRRGERVPAQFTSVSSNTNSASLKRIIVSNYKDFPVVEAFHYLYTNIQLLNAEHPISSLTITSTIKGEGKSTVALYLAKTASAVGKRVLLVDANMRLPQLHTYLGLSNMKGLSNVLSSDLSLNEAIQRLPDDDNLFVLTAGTIPSDPIKLLSSRKMHYLMEQFLALFDLVIYDTPPLMGLADGHLLASQTDGTVLIVKIEKTDRGLVNKALDQLKVADFKVLGVVANGVK
>NC_019729.1|WP_015178614.1|6137865_6139296_-|SLBB-domain-containing-protein
MKWLTLPALQLPLLALVLTLSYPQTNLAQSPAPATSINTDYYLGGGDNIRIDIYDLPQLSGEYQIPAGGAIQIPIIGSIPLQGLTLEQAAQVISRAYGRVVKRPLVTISLQAARPLNIWLSGEISRPGSYLLPLANGGGNRPSVQFPTLPQALEKAGGIRASADIRRVIVRRRLTANKEITITYNLWDYLQTGQTSQDITLRDGDQILVPPQETINLAETSQLSESNFSIPAEQPRTVSVFGEVKRPGRYVAIGGDTQNGQRSNGQPTIIRALQLAGGITSIADIRQIQLQRYTRSGKQQIRTINLWQYLQEQDTSQDTILQEGDIIFVPTATAIDPGEVSVLTTASFAPGTVQVSVIGEVNTPGGLKLPPNTTLNQAIMSAGGFRQNRANSRYVELIRLNPNGTISRSQVAINLNQGIDAQSNPLIQDNDIIIVARSRTAILADNINTVLSPVNNIIGGILVPTRLIELLRLFGN
>NC_019729.1|WP_015178615.1|6139329_6140685_+|O-antigen-ligase-family-protein
MKDILRVPMFALMLLCLTLIVFVTIYILVARYPKFGARLEKIFVGILFFTITGGSGIVAMPFTKLHPNVFYNLETTPPTMIGQIAIYGAMILMIFPRLTKTTQKAVSICIKWIAGDIFLGLFLLIMTLSGLWSETPEITFRAIFAIWIVTLVSIYVGKVYSWLEIYGLLRWLTGLLALWLLVKRNPALDGCWTGVFGHKNPFSFQMANTASLWILYAFKERKYRYFSLFIILIALVGLQKGCSGASRILTVVLISLWSYLALLKRLPVKWAFLCFILFLVGTIGISILVLNNLEAIIVEGLKKDMTLTGRTDFWPLIIDRINQNHPIFGYGMKGFWQSWRGSANPAYGIVVAKTGFVPPHSHNGFIDILCELGWAGLLLFIGSFFNNIFRGIKYLVKGSFPESGLPLYLLTFMLMTNLTEGGLLGVGTYWCWYVVLSVKLSLDPTAKDRQH
>NC_019729.1|WP_015178616.1|6140907_6143073_-|HAMP-domain-containing-protein
MLAILNKIGEIIARWWSDFTLQTRLMAGATLVVSLIMSGLTFWAVNTIQQDARLNDTRYGRDLGLLLAANVAPLIAKNDRSEVARFSRQFYSSTSSVRYMLYADEAGDIFLGIPFSESEVQTSLTLRRQIKLPDNFLADIEARNLTSLPLVRQHLTPDGEVTDVFVPLIHEDKYLGVLAIGINPNPAAVISSNLTRDVTLAVFVTIWVMVILGAVFNALTITQPIKQLVFGVKNIASGNFKQRVDLPLGGELGELIGSFNEMAQKLESYEEQNIEELTAEKAKLETLVSTIADGALLLDANLQVILVNPTGMRIFGWEGKNALGVNVLNILPSEVQQELARPLQEIAAGDREGGEFRISMSEPVNRTIRIVLTTVILHKAPGAEPLCRSCIRHEEDTCTEPQRPVAVECTFYEQTSKHQGSGNYRESLKGIAMTVQDITREVELNEAKSNFISNVSHELRTPLFNIKSFIETLHEYGEDLLESERREFLEIANRETDRLTRLVNDVLDLSRLESCRVYHLEAVDLLQAVEQTLRTYQLNAKDKGIELEQEVDPYLPPALGHYDLLLQVFANLVGNALKFTESGGKVAIRAYLLEPETPTHKDSQSVNQNLSPDAKHCPVVRIEISDTGIGIDPEDQQAIFDRFFRVENRVHTLEGTGLGLSIVRNIIDKHHTKINLVSEVNVGTTFWFDLAVYQPKQTVEMENSWPVEATVESETIASHIK
>NC_019729.1|WP_015178617.1|6143235_6144516_-|phosphoribosylamine--glycine-ligase
MKVLVVGNGGREHAIAKKLLESTRIKQVFCVPGNGGTATTPGCQNLSLNIDDFQGIERFVMVNNIGLVIVGPELPLSLGIADYFQQRKMMIFGPTKAGAQIESSKSWAKELMLEAGIPTPKAAVFTDAEAAKAYVLEQGTPIVIKADGLASGKGVTVATTVKMAHSAINTIFRGEFGTDNIRVVVEEFLTGQEVSILALTDGITVEPLLPAQDHKAIGEGDKGANTGGMGAYAPAPIVTPELMERIQEEILEPTLAALQKRKIDYRGVLYAGLMITPDGEPKVLEFNCRFGDPETQAVLSLLETPLEDLVLACCQQRLGEYSIRWKSGASVCVVLASGGYPGSYQKGKVITGIEEAEAKGAEVFHAGTQLKQHQLVSDGGRVLGVTAAGETLEQAISKAYAAVDCIQFEGVYCRRDIGRRALGDKN
>NC_019729.1|WP_041622740.1|6144853_6146116_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKSNQTAASSSANFQRVGVVGGGQLAWMMGDAARALGIELVVQTPNATDPAVSVAAGAVLAAVDDVLATAQLAAGCDVITFENEFVDLDGLRPLEEQGVLFQPSLSSLSPLLDKYVQRCYLQGLGLPTPRFWEWDCSADLPPELFKAVAIDFPAISVSDSLQSEEDSDAGSIDFPFVVKVRRHGYDGQGTFIVKDRGSFESIRAKLKGQSLLVEEFVPFDRELAVIAARSANGEIAIYPIVETQQQNQVCHLVIAPADISLEVKTEACAIARTLLNSLQAVGVFGIELFLTADNKLLVNEIAPRTHNSGHFTIDACETSQFEQHLRAVCQLPLGNSALKCAGAVMVNLLGYESAQSDYLAKRKQLAQISGAFVHWYGKKVSRPGRKLGHVTVVFDADLVAQGRSQALAIAQTVEYIWYAS
>NC_019729.1|WP_015178620.1|6146923_6147685_-|FkbM-family-methyltransferase
MFVHKLQQLVQRQIRAKKLGIKFSRVANFQLPEQLIVQGKLHRVNVPSEKGMDGEFIEVLLDDCYGVEQLSESLMTIIDIGANVGLFPIAARNRFPQAVIHAYEANPYLENYLKHQSKIANFTYFMEAVGCRDGKVVLDIREVSGKTRSTVSESGEIPMISFRRAIERIGGSVDLAKVDCEGAEWLLFEDRDTWQLVQNLSLEYHLWSGHTHAETRQIIESLGFRIGKQIPIDKWYGSILASRSCNPQGYSRC
>NC_019729.1|WP_015178621.1|6147967_6149014_+|peptidase-M42
MLEFDRLFQTIEELVMLHSPSGAESEINQRLMEKFAALGVNAWVDRADNAIALIKGRNPEKSIAITAHKDEIGALVKTIGESGRVEVRRLGGAFPWVYGEGVVDLLGDKQTISGILSFGSRHVSHESPQKAQQEDVSLKWENAWIETKCTAEELAEAGIRPGTRMVVGKHRKRPLRLKDWIASYTLDNKASVAILLALAECLKEPAVNVYLVASAKEEVGAIGALYFTQRQPLDALIALEICPLAPEYPILDGENPVLLVQDGYGVYDEGLNAQLRAAAAAADVEVQLAVISGFGSDASIAMKFGHVARAACLAFPTQNTHGFEIAHLGAIGNCAAILKAYCDELSGE

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Crispr_ID: NC_019729_59

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_59

6543961-6544108

Orphan

Consensus_repeat	Method
AAGCATCCAGGATACAAGCCCCCGGATTCATCTCGCGCAAGTCAATGCTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_59

>merge|NC_019729|59|6543961-6544108|CRISPRCasFinder
AAGCATCCAGGATACAAGCCCCCGGATTCATCTCGCGCAAGTCAATGCTTCAATTCTTTAATCTAAAATCTAAAATCGCGCAATCGATTGACAATCAAGCATCCAGGATACAAGCCCCCGGATTCATCTCGCGCAAGTCAATGCTTCA

>NC_019729|59|57|6543961-6544108|CRISPRCasFinder
AAGCATCCAGGATACAAGCCCCCGGATTCATCTCGCGCAAGTCAATGCTTCA	ATTCTTTAATCTAAAATCTAAAATCGCGCAATCGATTGACAATC
AAGCATCCAGGATACAAGCCCCCGGATTCATCTCGCGCAAGTCAATGCTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178918.1\|6540841_6543127_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NC_019729.1\|WP_015178927.1\|6552841_6553267_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NC_019729.1\|WP_015178914.1\|6532157_6532985_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NC_019729.1\|WP_015178922.1\|6547565_6548978_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178911.1\|6528165_6528993_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_019729.1\|WP_015178917.1\|6535389_6540597_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_019729.1\|WP_015178925.1\|6550698_6552003_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377544
NC_019729.1\|WP_015178926.1\|6552241_6552688_+\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|143580
NC_019729.1\|WP_015178920.1\|6544377_6544785_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111615.1\|6543276_6543693_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178915.1\|6533190_6533883_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381154
NC_019729.1\|WP_015178921.1\|6544778_6547322_+\|protein-kinase	unknown	unknown	gnl\|CDD\|238121
NC_019729.1\|WP_051041561.1\|6528946_6529672_+\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NC_019729.1\|WP_015178923.1\|6549055_6550081_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178928.1\|6553458_6554430_+\|putative-2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|180488
NC_019729.1\|WP_190274278.1\|6533989_6534148_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178913.1\|6529679_6531737_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_019729.1\|WP_015178916.1\|6534499_6534859_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178929.1\|6554556_6555978_-\|2-succinylbenzoate--CoA-ligase	unknown	unknown	gnl\|CDD\|236019
NC_019729.1\|WP_015178924.1\|6550248_6550572_-\|TMEM14-family-protein	unknown	unknown	gnl\|CDD\|227835

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178918.1\|6540841_6543127_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NC_019729.1\|WP_015178927.1\|6552841_6553267_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	5.74751e-27
NC_019729.1\|WP_015178911.1\|6528165_6528993_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	4.83335e-67
NC_019729.1\|WP_015178917.1\|6535389_6540597_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.4924e-92
NC_019729.1\|WP_015178925.1\|6550698_6552003_+\|ATP-binding-protein	gnl\|CDD\|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	1.62313e-134
NC_019729.1\|WP_015178926.1\|6552241_6552688_+\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|143580	cd07176, terB, tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.	1.07719e-24
NC_019729.1\|WP_015178915.1\|6533190_6533883_+\|response-regulator-transcription-factor	gnl\|CDD\|381154	cd19927, REC_Ycf29, phosphoacceptor receiver (REC) domain of probable transcriptional regulator Ycf29. Ycf29 is a probable response regulator of a two-component system (TCS), typically consisting a sensor and a response regulator, that functions in adaptation to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Ycf29 contains an N-terminal REC domain and a LuxR-type helix-turn-helix DNA-binding output domain. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	8.56823e-56
NC_019729.1\|WP_015178921.1\|6544778_6547322_+\|protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.05138e-106
NC_019729.1\|WP_051041561.1\|6528946_6529672_+\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	3.00125e-90
NC_019729.1\|WP_015178928.1\|6553458_6554430_+\|putative-2-dehydropantoate-2-reductase	gnl\|CDD\|180488	PRK06249, PRK06249, putative 2-dehydropantoate 2-reductase.	4.8754e-173
NC_019729.1\|WP_015178914.1\|6532157_6532985_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	2.00806e-173
NC_019729.1\|WP_015178913.1\|6529679_6531737_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.03267e-59
NC_019729.1\|WP_015178929.1\|6554556_6555978_-\|2-succinylbenzoate--CoA-ligase	gnl\|CDD\|236019	PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.	0
NC_019729.1\|WP_015178924.1\|6550248_6550572_-\|TMEM14-family-protein	gnl\|CDD\|227835	COG5548, COG5548, Small integral membrane protein [Function unknown].	2.74779e-19

>NC_019729.1|WP_150111615.1|6543276_6543693_-|hypothetical-protein
MQRGREYSGLRDRHEGEYTAVCGQLRGFNCRRSIDRRHQGDRSNPATASQRPPPKNISRSAATCQPITWLTICLFVIVIWQHYNLRRLGAEISDCPTKYWWLGGLGGALMAAMAIGSAIKTETSWGWTWRGRTLQIKS
>NC_019729.1|WP_015178918.1|6540841_6543127_+|FdhF/YdeP-family-oxidoreductase
MDVNSQNVQPIPPFNETNEETPEIGGGLPVIEYWAEHTLSPEGPKLWKTLLHKSACLSCSWGTGGQKGGFTNEEGEKLQRCMKSVEAISAEIKPAISTQFFEQQSIAELQQLTSMEADRLGRLSFPMILRAGSSHYDRISWEEVYQIAEAAFRKTPERVASYSSGRSSNEAAFLLQLMMRAMGSNNLADCSDLCHAPSTTGLSEMFATRTSVVSLENLKEADCVVLAGSNSSYNHPRLMNELIKIRDKGGKIIVINPVMEIGLVKFGSPAFPVKSLIPGSDISSLYLQPIPGSDTALFVGIQKSLIEQGLLDESYLQAHTEGWEAAVQHARETDWETITETCGVSRAEIEAAAKIIGTSQRVVFGWAMGITQHDNGVDNVFSIANTALMTGNVGKEGAGLMPVRGHSNVQGFGSMGVTVKLKKEIQQALEKLLNRPLSSVKGYETRSLIEAADAGKVDTLICLGGNLYGANPDSMQAKRALSNVETVIYLATKPNLGHFHGLAKHNTIVIPVLNRFENPHKTTVESGNNFVRLNDEGETHLKNADLIPEVQFLTELASRIHGDFPVDWRQLQDTKYVRQLIAKTIPGYEKIATIDETQEEFTISGRIFTEPKFPTESGKAKMFVAPLPKLKLPEAKEFGVSESVRGLVVALMTGRSYSQHNTVVYKIEDKYRGMPHRNCILMNRADAENVGFQEHQRVTVQGNVGKMENVEVIYGAVREGAALMFYPEVNVIFNPEIERRSGTPAYKRVPAFVYAEVRQRM
>NC_019729.1|WP_015178917.1|6535389_6540597_+|hypothetical-protein
MINSHCQQDTAAQQNKSSLQTLSRTLSMSQGQFSLILVRCNYSAMREEIVRQLREESGIEIREIVLPPSVKTLYTTIETKLSCSHSHPPALMVFGLESVSAIDRVLTSTNYVREEFRNNFPFPVVLWVTDKILKKLIRLVTDIETWTTTVEFVIGPDDLVDFLGQSADRLFSNILESGNWRLSNSAILGANSLSELESASQDLQTCNIRLEPAIEASLQFIRGRHEYACHRIPAAIELYRKSLSFWKHQVAFIGSKTEFSDLLFTVHPAPVLEGIILFHIGLCYRFQAEKHRRGNRPYWTEAKNYFQECIDVLERAGRPDAVGIFINQLGEVLQHLEDWDALWNLAIKARRLHENMENSAVNLAQDYGFLARVALEQKNWQGAKEWALIALDVLNSNLEATGQGTPVKSQHQGLYLLILAEAQSQLGEVEEAIAHLELARSETEACYNPQLYLRVLEMLRSLYFQRGQYLEAFQIKQDYRAVEHTYRFRAFIGAGKLQPHREAVNPVAETVAGAATIADEITASGREEDLNRLIYRMNNTPDKLTVIYGQSGVGKSSIVTGGLVPALKQKKIEMRTVLPIVLQVYNNWPRELTRQLSAGKAEIFEPEITEAVAETAPVDFPVEAGEFKGNLISGFHGYSTGNNEARREHSQPVELIIQQQAIEYENIIKELQRNSEHLVTVLIFDQFEEFFFVWKEPAERQIFFDFLRECLKIKYLKVVLCLREDYLHYLLEFSRPKNQTGFVNNDILEDILSKNILFYLGNFSLVDARSVIRTLTERAQFYLQPELIEELVKDLAGELGEVRPIELQLVGAQLQQEDIRTLAQYQELGNNPQQKLVERFLEEVIKDCGPENEVAARRVLYLLTDEDEIRPLKTRAELASNLATFAEADKLDLVLELLVKSGLVFRWTELPAELYQLVHDYLVSFIRQQQELDKKAEFEELRKQNQINRDEIEQIRKDRERDALLSEARDKQRQARDKQHEAEAQLYQSRRWQLRAAVLGVLVLGGVSGMAFEQAKLAESARQEAEKSRTDALNSASEALVLSNEKNQLGVLENSIKIGRDSLKSTALPVDTKNQIAERLRQAVSGVQERNRFEQHSKFVLDVSVSPDGNSVASASADKTVKLWSKEGKLLKTFNHPDSVTSVSFSPDGKTIATGCADRTIRIWQVDNDKSAIGILSGHRDIVTSVSFSPDGKTLASASHDNTVKIWNLANKKLLQTLTGHKDWVLGVSFSPDGQTIASASVDKTVKLWNRESKTQKFKINPKTLTKHSGIVYSVKFSPNSRELVSASADTTAKIWNRNGEEIRTLKGHNDEVVSASFSRDGEKIVTGSADDTVKVWSRSGTLLNTFRGHQDDVRAVSFSGDGTIASASKDKIVKIWKPDSTPLNKILSGHGDWVYKVSFSADSKTIASASGDKKVRLWHADGSLFKILEGHKDSVTWVSISPDDKTVASASDDKTVKVWSLNGKLLDTLSHSGIVRSVSFSPDGKIIAAASADRKLYLWRWNGAKATLFAKLDHSNPVISVSFSPDGKTIATATAAEDKASGKKKAFEITGEKRVYLWQFNGSSAKILKTLDHQDSVKNVSFSPDGKTIAAACADKKVYLWEFDGKVANLTEKLDHSDTVESVSFSPDGKLIAASGGNTVKLWDFDGKKALLSKTLESSDRVLSVTFSSDSKTLAFASSDRTVILWAVENLELNNIIARSCEWLGDYLQNDPNVAEGDRLLCLGFGKQALNKRK
>NC_019729.1|WP_015178916.1|6534499_6534859_+|hypothetical-protein
MRKITARQTISAIAALPIVLIANTTQAFAADTGQKIDPIKKVSDFGDELDFDMGQPTTISIEESEDWDEPDFTATLDMEISKFMTKNLQAVIDEPPPVVYLSAARGQSSKECRISAICE
>NC_019729.1|WP_190274278.1|6533989_6534148_+|hypothetical-protein
MTDIWWLWYVTSACWWERGSGKTGVRKLVCDRTSHPLCLESEMNTRKRRGIT
>NC_019729.1|WP_015178915.1|6533190_6533883_+|response-regulator-transcription-factor
MSARLLLVDDEPGLREAVQAYLEDSDFAVEVASNARDGWELLQQYNPDLVISDIMMPQVDGYQFLKQVREDPRYKALPVVFLTAKGMTGDRIQGYQAGCDAYLSKPFDPDELVAIVTNLLARRAAAKETSESSESPDIAALTSQMARIESLLSGRSSIAQSPSPIKIDLTPREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGLTK
>NC_019729.1|WP_015178914.1|6532157_6532985_+|type-I-methionyl-aminopeptidase
MNIFSSLLSSPTQAPQVKKQRRGIEIKSEREIEIMRQAAKIVATVLKEISQMVKPGMTTADLDAYAEKRIRAMGATPSFKGYHGFPGSICSSINNEVVHGIPSAKKVIRAGDVLKVDTGAYYQGFHGDSCITIAVVEVTPESAKLIRVAEEALYKGIEQVKAGAYLLDLAGAIEDHVKSNGFNVVEEFTGHGVGRNLHEEPSVFNFRTREMPNVKLRAGMTLAIEPILNAGSKYTRTLSDKWTAVTVDNAMSAQFEHTVLVTETGYEILTDRSKV
>NC_019729.1|WP_015178913.1|6529679_6531737_+|response-regulator
MNMQSPHRVNVLLVDDRPENLVALEAILNSPSYNLVQANSGAEALRCLLNEDFAVILLDVQMPGMDGFETATLIRSRDRSRATPIIFITAFSSNDTHVFKGYSLGAVDYLFKPLEPEILTSKVQVFVELFQKTVEVKQQATQLAAVNSELSKSEERFRTLCACSPLGIYLADVEGRCTYINPRCQAICGLTLEESLAEVWQREVHPEDRDRVVADWLAWINESQEYSNEFRLAGSENVRWVHVQSSPMFSDLGKLIGHVGTVRDVTDRKQAEEERSRLIREQVARQEAERANQMKDEFLAILSHELRTPLNAILGWSRLLRSKTFDRDTIEKALETIERNAKSQAQLIEDILDVSRILRGKLNLNKHPIRLESAIKLAIDSLQPLTEEKSIVIELTCSPNVGEVIGDPDRLQQIVWNLLSNAIKFSPPEGKVQVRLESVGEEAQIEIIDSGIGIAPDFLPYVFDRFRQADSSTTRSYGGLGLGLAIVRHLVEQHGGKVYAENNPGEGAKFTVALPLAQRNALAADDDWSHLNDATEVLPTLANLQLLVVDDDDDTREFLIALLEDEGSVVRSAASVAGALAALESYWPDLLLSDIGMPEADGYELIRRVREMEVLRGGKMPAIALTAYAREEERKQALEAGFQMHLSKPVDINKLIVAIANLTGMLGNPAPTHILDDAQEQARCL
>NC_019729.1|WP_051041561.1|6528946_6529672_+|chemotaxis-protein-CheB
MNQLKVVINYTGELNKKNFEIVVVGTSLGGLEALTVLLADLPQSFPLPVVIVQHRHKSSQNRLTDFLQKQSSLQITEAQDKEELAPGRVYLAPADYHLLIESPSEEEFSLYGNDFTESGSVAVESIHNSKVPIPNRGTPTFALSTEAPVCYARPSIDVLFESAADAFGEKVIGIILTGANSDGSKGLAKIKAEGGLTFVEEPASALCPIMPASAIANVEVDWILPLSKIAPCLVNLLRIKD
>NC_019729.1|WP_015178911.1|6528165_6528993_+|protein-glutamate-O-methyltransferase-CheR
MSESHELETIEIQLLLEGMFRYYGFDFRNYALASLKRRIWNTIRSERLTTVSALQEKVLHNPAYLDRLLLDISVNVTAMFRDPSFYISFRNKVVPLLRTYPFIRIWHAGCSTGEEVYSMAILLQEEGLYDRCRIYATDMNELVLKRAKTGIFPLKQMQEYTQLYHQAGGKKAFSEYYTAAYENAIFRSSLKENIVFAHHNLATDNSFNEFNVILCRNVLIYFNSHLQERVHKLFYESLGMFGVLGLGHQESLIFTPYEKYYEPIESSDKLYRRIK
>NC_019729.1|WP_015178920.1|6544377_6544785_+|hypothetical-protein
MSEHRCCTIVKNGQDARSTKNEFSCGTGILPVPKQVNENGAISQSEVRSQKSEGKKSEGKKSEGSRPMEVGIRKERRRKETTIPNTQCPVLPRPNALFCQGPGTPNLPEKGYITDSTVQLFLAKINQKKAALLSW
>NC_019729.1|WP_015178921.1|6544778_6547322_+|protein-kinase
MVSQLLDGRYQIIEVIETGEFGQTYLAKDIRRPGEPQCFVKHLRPGTTEPKLINTTRRLFQKEAEVLEKLGQHDQIPQLFAYFEENEEFFLVESFVAGHSLSTEIVPGKPLSEEKMIALLKELLEILVFVHGQGVIHRDIKPANLIRRYSDNKLVLIDFGSVKEIHIAQRQAPVTVRIGTLEYMPIEQFQYNPQLNSDIYALGMIGIQAMTGLPAYDLPKLRDLKNSNKGEIVWRHLATCSQALADVLDNMVRYDFRERYQSAAEALADLRKIGDRSRARIPKLTIYREEVDRRSSSRGDITVVGRRILDELRVSLELLPEEAEAIEDEVLNPYRKYREKGERYEQSLQEAMQQEYPFSQETRDELKRLQQVLGLTDEDAAKIEELVIPKSLFAKLYKAISTVLEGHRNPSGPAASSAPHLELQASPAVSPQVNLNGKTDFSLAQPAPTGAALTERIASTAAIVPKETRKFNPYLAGATMAAILAAIGGIYGYLKWQEWQQRAQKESQQINQIEALYKASNYEGCISQIPTIANTSSSYSSAQKLQEQCQSGLRWKNAKVKNFAQHSDAVGSVAFSPDGLMLASGSKDKTIQIWDLATGKSLRTFPGDSSTIWSVAFDSNGTKLATGTGFWRVMLWDLKTGQVIRSLDHSASVWSVALSPDGQLVASGSGDKTTKISDAATGSVIQNLPDHTDFVYSVAFTPDGKSLVSASKDKTITIVDVATGRLLKTLQGHGEPVRSIAISPDGKTIVSGSYDESIKIWNLETGDLIRSIKGHSDDIVSVAISPDGKFIASGSKDKTIKIWDFATGELLNTLTGHSDEVYAVTFSPDGKTIASGSKDNTIKLWLR
>NC_019729.1|WP_015178922.1|6547565_6548978_-|hypothetical-protein
MDYIFTPATQARLNSGNLVQPAAKTGKLLPAARDPVTGEFVEIAKIFYQSRSETLSSRTVIGLLAQLVGGGPIQPLIAPVYVTQAPLQVAQTHQGFQKIYRMLNSLKINLAVMQATAAVIGIGAVSSTVLSAVNLNQVLKIRAEAKHQKLKIKDGFIDLRHILKDRGVEVIQQIFKVAHDSSFEMHRQKLVNGYDIFSKAIKRCQSALTVPDIKLRNSEINSGRDMLFDALKIYDNPSLLEDLCSAGKLRQMECVWAIEQAIGVTFHLQRAYDMVSDRLRELQSKICQNLLTVVKGCQSEPELDFLFPEVTRILGHDLSIIEFWQNEVDWMQTLSPKEQHQLASLDKLTGDSLKSSVYTTFAVLAAEPSLYESLKQKSHFLSLRDQLTFAVSPEIRRRYEVYVSQQAIATGYQALAASNWQEISDLTVANLYYFFQIRENSTENYPTEDELETPYWHFPPTLKNELNYTS
>NC_019729.1|WP_015178923.1|6549055_6550081_+|hypothetical-protein
MNEYLKAFQAITLFSDRLLADEYQSVEIKQSATQLSLDVEPCIDEIKQSAIRLKGLLQVCFKDVSQAEDVWNSKPRIARASPVDVWEQIGELSGCDVRIRSLGKQGKYDAVVKVRQSWSDKATKLKNQWFLWDKNPQGFQRNTIGFFDKDNLHKELRNEVDSQAERVIVIMENELSLIFQELQSIDIEKIEVCIECFDLKTQYKFRERLQSIGREIVSKFTEPLKYLPDSYMKSFKETLKEPVETLVHKSKMGISLVDFEYSCKVIELILDNVIIAIFEERMKLAIQTVEKAIKFYNNFLEKQARYQKETPEQRAAEKDWIECQRQQLREVQQYVDAVINH
>NC_019729.1|WP_015178924.1|6550248_6550572_-|TMEM14-family-protein
MNLGTAAAIGYGILTLVGGIMGYIKAKSQASLISGLTSGSLLIFAGTAQLMGQSWGLTLAAAISAVLVIVFIVRLVKTQKFMPAGMLILASLASLGAIVYEISGQYQ
>NC_019729.1|WP_015178925.1|6550698_6552003_+|ATP-binding-protein
MSALTSGAIAQIRYLQRQAASLLLYQSVLKSPAGQAFLDLLQALHHSEVSGLECQVAYGNWFKLQAAKNLTWKDSLISEILKNENPFSRRAQQTDFASLPPALVEAARHDLEVLQNIYECSSEQLSKWVRVAGQLDAVPPIWHSETVAEQGDLPLHGKLEKWSSAVESLAVYYRQFGTGLFAEYRAFAWRGGELANISHPDGITLKELVCCDWQRDALVKNTEFLLAGYPALHVLLYGSRGSGKSSLVKSLLNEFGSRNLRLIEVSKSDLQDLPLIVEQLRGVPQKFIIFVDDLSFEEDDDAFKALKVVLEGNVTARSQNVVVYATSNRRHLIREFFDDRPRPRDGDEVHAWDTVQEKLSFSDRFGLTLTFEPADQNTYLTIVRHLAELAGIKLAAEDLEHRAKEWATRRNGRSGRTARQFVDFLKADLAIFHK
>NC_019729.1|WP_015178926.1|6552241_6552688_+|tellurite-resistance-TerB-family-protein
MGLFDKVSQTRQETEVTLGPAESFAAIALIAVAADGYINDSESKAISMTLSRMQLFRSYPDDVMRKMLDRLLMIMQRQGVEVLFNAALATLPDELKETVFAVTTDIALADGEVSEEEEQLLNDLYSALGISEDIALKIIDVMLIKNKG
>NC_019729.1|WP_015178927.1|6552841_6553267_+|acyl-CoA-thioesterase
MPFTYTRTVRFQDTDAAGVVYFANVLAMCHEAYEASLAASGINLKAFFSNPEVAFPIIHASVDFYRPMFAGDRLIIQLTPKQVTGDEFEIAYQVFSEEVAGRSAAKALTKHVCIDAVSRNRKQLSEDLMQWMRKFEIEISD
>NC_019729.1|WP_015178928.1|6553458_6554430_+|putative-2-dehydropantoate-2-reductase
MSNRNYAIVGTGALGGFYGARLQQAGLEVNFLLRSDYDYVKEHGLIVESPEGDFTLPHVRAYHDAHKMPQCDVVIVALKTTQNHLLPKILPPLLKDNGAVLVLQNGLNTEPEVAKIVGAERVVGGLCFLCSYKVGPGHICHLDYGTITLGEYAQDYKAIGITNRMHQIAKDFKRAHIPIKMSEDLLLSRWKKLVWNIPYNGLSVVLDARTDELMANPDTLILVKEMMGEVVAGAKSCDRIIPDDFIPQMLEYTQKMKPYRTSMKIDYDESRPLEVEAIFGNPIRVAQQAGIKLPQIEVLYRMLKFVDVQRQEAERTRRLLGLH
>NC_019729.1|WP_015178929.1|6554556_6555978_-|2-succinylbenzoate--CoA-ligase
MATNLTVNILDIASGFPDNWLIGCDSREFARIVDRLFQEITQNPAQKTPPKICLAEPEPVQFLASFTAARATKCPIFLCNPNWVKPEWEQVFDLVQPDIFLGQYPLPTTPYIPVREGGLRLYSREFPSQTKSGFDTIMIPTGGSSGKIRFAIHTWETLTASVQGFQQYFQVDKINSFCVLPLYHVSGLMQFMRSFTSGGRLAIQPFKELENGKICDIEPEEFFISLVPTQLQRLLQNPDTANWLGRFRAVLLGGAPAWPELLETARNYQIKLAPSYGMTETASQIATLKPQDFLAGNNSSGQTLPHAQITIRSANGDILCDNQIGNIAVNAKSLALGYYPEQFGVSQYFQLDDLGFFDKNNYLNIVGRSSDKIITGGENVFPAEVEAVVRSTNLVADIAVIGLPDKDWGQVVTAIYVPANSEVTVKNLQAAIEDKLSKFKRPKYWVVVEQLPRNSQGKVNREQLQEIAMCHCR

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Crispr_ID: NC_019729_60

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_60

6575143-6575238

TypeI-D

Consensus_repeat	Method
AACGTAAAACCCATAGTCTGCCAG	CRISPRCasFinder

1 spacers

cas3,csc1gr5,csc2gr7,cas10d,WYL,cas4,cas1,cas2

The CRISPR arrays of NC_019729_60

>merge|NC_019729|60|6575143-6575238|CRISPRCasFinder
AACGTAAAACCCATAGTCTGCCAGCGGTTGAAACGCGATTTTTACAGTAGGGGATACGCAAGGGCAAGCCTTAACGTAAAACCCATAGTCCGCCAG

>NC_019729|60|58|6575143-6575238|CRISPRCasFinder
AACGTAAAACCCATAGTCTGCCAG	CGGTTGAAACGCGATTTTTACAGTAGGGGATACGCAAGGGCAAGCCTT
AACGTAAAACCCATAGTCCGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178955.1\|6582855_6585018_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_019729.1\|WP_015178948.1\|6575565_6576159_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_019729.1\|WP_015178950.1\|6577190_6577466_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019729.1\|WP_015178946.1\|6572020_6574297_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|274457
NC_019729.1\|WP_015178938.1\|6564105_6564420_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NC_019729.1\|WP_015178941.1\|6566349_6566805_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_019729.1\|WP_051041562.1\|6585885_6588834_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|225751
NC_019729.1\|WP_015178937.1\|6562046_6563984_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|224087
NC_019729.1\|WP_015178951.1\|6579564_6580683_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_019729.1\|WP_015178953.1\|6581213_6582221_+\|protochlorophyllide-reductase	unknown	unknown	gnl\|CDD\|180983
NC_019729.1\|WP_015178940.1\|6565073_6565925_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019729.1\|WP_015178956.1\|6585161_6585779_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015178949.1\|6576186_6577188_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_019729.1\|WP_015178939.1\|6564684_6564900_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178944.1\|6570043_6571060_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_019729.1\|WP_015178945.1\|6571236_6572040_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_019729.1\|WP_015178942.1\|6566801_6567230_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NC_019729.1\|WP_015178943.1\|6567290_6570032_+\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	unknown
NC_019729.1\|WP_015178952.1\|6580874_6581132_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_083888213.1\|6579284_6579440_+\|transposase	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178949.1\|6576186_6577188_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	1.28156e-133
NC_019729.1\|WP_015178950.1\|6577190_6577466_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.78405e-33
NC_019729.1\|WP_015178946.1\|6572020_6574297_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|274457	TIGR03158, cas3_cyano, CRISPR-associated helicase Cas3, subtype CYANO. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.	1.0778e-100
NC_019729.1\|WP_015178938.1\|6564105_6564420_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	7.34736e-44
NC_019729.1\|WP_015178941.1\|6566349_6566805_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.61467e-16
NC_019729.1\|WP_051041562.1\|6585885_6588834_+\|S-layer-family-protein	gnl\|CDD\|225751	COG3210, FhaB, Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion].	3.31778e-23
NC_019729.1\|WP_015178937.1\|6562046_6563984_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
NC_019729.1\|WP_015178951.1\|6579564_6580683_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NC_019729.1\|WP_015178953.1\|6581213_6582221_+\|protochlorophyllide-reductase	gnl\|CDD\|180983	PRK07453, PRK07453, protochlorophyllide reductase.	0
NC_019729.1\|WP_015178940.1\|6565073_6565925_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.37219e-11
NC_019729.1\|WP_015178956.1\|6585161_6585779_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.32334e-29
NC_019729.1\|WP_015178948.1\|6575565_6576159_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	7.0752e-57
NC_019729.1\|WP_015178944.1\|6570043_6571060_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	1.00848e-173
NC_019729.1\|WP_015178945.1\|6571236_6572040_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	8.57477e-68
NC_019729.1\|WP_015178942.1\|6566801_6567230_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	3.97303e-18
NC_019729.1\|WP_015178955.1\|6582855_6585018_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.37766e-110
NC_019729.1\|WP_083888213.1\|6579284_6579440_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.10807e-12

>NC_019729.1|WP_015178946.1|6572020_6574297_+|type-I-D-CRISPR-associated-helicase-Cas3'
MDHLKIKLEPASISACPQLPKPLEFMGQALQHQVDVYEASENNDIILDLAPTGTGKTKAGLSVLLHNSQRNAIYIAPTNALIDQQTEAAEKFVLDARLPHLVKAASAKQVNSWPDDRVGKRSGEKIYNVLREPATIFPECGGGRPILLVTNPDIFYYAAFFQYNPLDRGNIASEFYSSFSTVIFDEFHLYDAKQLVSLFFYLALSKEFGYFQYKRKIVLLTATPEPACEEALNVLGKNGVKIARIDGKSQISYLRPSQTEVNLEIRKQVDKETTIAEIVQEVLRRLRENPDQNGAVILDAKDTLGRISDQLRDRGFSDFCGRITGDTPKEERPLAAQKQVILATSTVDVGFNFDRENETPRQNLDWLIFSTRDRFSFWQRIGRVGRVLGKTQTEIPSEAIAYLPDRAWEQGIEQLDCFGGRKALTEMLESLDCMKRPFLDIYWRSEAFLEIAKPLLELEIVFDNLPEASLVMQLYQTMQIVLGGKRDWNSYRRRMKVLQGAENVAKSTIKQIQKEWQYIKGGQNCVISFMQANYPEDWAEIDSGRTSIELVEEKIRKNQKVAEELKEYATILKASYAPLFKFRESLFENVKIYDPKNFLLDEVGETNLDPIHLLRFFEFASDENGIVLTDRATETYGLKFALQVADLEDFANHYLGKLYAFKNCKIERTIGDNVRPTALISQLTPPLMPGVIVREHRKNRWAILKLRKQGIECYPITVKDSFANEQEYTFFPSLSGILAIASAGVTLKCPDNQEFWVI
>NC_019729.1|WP_015178945.1|6571236_6572040_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MPQLELFRTSFTSIIAYQTARLVELWCAEPVFFASRELSDTYYTEGAIGNYALAYALGWARSPYRLTGQDTSRPRYIEDLTPLSGNSYILPAWPAGGTLSFRFERFNALSDSYWYAMTNNRVATAREDLPLSRTGKKPSTYRPSNFPQTGRLRVIERGNRFQTLVFGDRELPEYIRVGKFTSKVRVEIVKKLDFVQLPRGDYRCNTYLSAADLPANIELLAFDLISMPPASLLKNLSFRGEALQAGDFILPANLEFCGGNNNGSSEN
>NC_019729.1|WP_015178944.1|6570043_6571060_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSIAKLQPFLAPSYENFPKGRTIGIVVLRTTQSETIFRTEGTGEPMCNEYVQAGIEDTESIPRLVMTKRKQVAPERRKGREFLRSHNLLYTAPKTDAICALNTNAPCEMCVDCFLYGFAAGGEGAQKSRVWTEDAFSVLHSTELIADRTINAIFETGTMRDEKGNASTALNTSEYIKPGVHFLDIVTLKDVTADELRYTLGNILLTSRYGAVSSRVGRMDNQILGVFGGIAELPSSLELVQGVYDKLKAQNTALEHPLKTASLVDATQEIIGSWTNKRGISMQLSPAECDALIADVDRHWSLPEQETFLKRLDESYAPWRKVKSENKTKGRGKKSEES
>NC_019729.1|WP_015178943.1|6567290_6570032_+|hypothetical-protein
MSTKSLLFDEETTTLDERYFAEVRPKLYQLHTNHGQYGTRQGRTLAEHLDSACQFVLTVSKIAGVPDDKRACILAATAVHDLNKLADDGRNVKTLARDRPFLLQQLDRACVSKFAQTDEELELVRRLIERHSGHNASDPMRFLPEDPNIKRWAAMLIGGDLFDLGIDEETRIRKVENELTVALQRDSKLFQVTLSEDRGYLTSLLLSACEEVLHDRNLHTLAIDPNGQIFVGEAFPDGDLSLILAQKWQKKIDRVFSSNVEQLVNATKDGIKIDPQAIQQNPEATLDEVDKLLLKKASGYKVEKVAKDIDKYGGDAGENAVTAAAAVGLHPVSNADEFAISEGLKTAYLSYRAAELSPKEVWDRIAAQVGLSPEQRAALEPFNAQYGRCLFAAKSIEGDREQKLEKVFAALEDSFQLRGKAEEIDVSEELVNAVRQLLNFSTPANWQGFNELTAYVEANPRQRCSLGTTSLQIGELSSPKMPPGTKVQAFSNRLPGGMIAEPKRRADNLSALGYQLMAVGANFPNSVKQDPLYLHFALPKGSSIELRIIWQNFLRNTAAQNEDGTVTVDEIKLYRENEIVFQSNKMVGLALPKRPEFINSTVTIPVLWGEVNNSLALLKSLRLALEMSLAFDLGFPFVLGANLEVEPTWDFFGKVEGIPSSLQPLLGSGQYRRNGHLSKEERRTAVTAEQVLERLRCIGKLAISVASIQKKDDCLYDLARAATRPLSFYYVLLRWLLREQDDPNLEAVWSRIKEPLNTLLRSLMSEEHDRVSSYLKQAAHIAEFAKLRGSSFRRTAQTEPFSEFIKAVRSRKSHMDWDTVFASLVQQYHNRLDRIREHGAGATKYEQIKQFYQVLQQLFEEVYHSRPERLLTDSKTLEAAYLFFLQEARQELKSKTESATTSKTESESTPANN
>NC_019729.1|WP_015178942.1|6566801_6567230_+|DUF86-domain-containing-protein
MSIQKTVVLTRLKFIGEYLLELRRFESMSLENYLASFDSKIISERIMELIVQAAVDINEHILTRGMKVNSDSNRESFVQLGSYGIITPEVSEELVKSAGLRNILAHRYLEIDYVMLFNSVQVALIYYPIYIEQVAEYISQKK
>NC_019729.1|WP_015178941.1|6566349_6566805_+|nucleotidyltransferase-domain-containing-protein
MLQISPTLTELQEIASQLPEQIPYLKMLILFGSRARGDTHAKSDWDFAALYDEKLREESCNNRGFAWFEVPGILGEAFSINSDEIDVVELNRCSPLIANFIARDGKLIYEQESGQFEQFVKTHLMNELELQELERQLYQSIDDFLKDWRSV
>NC_019729.1|WP_015178940.1|6565073_6565925_-|WYL-domain-containing-protein
MPRKKETITLSIPAGTKEQLEAIALRLGILWGKSPSVSGLLVAVAQQKIEVGEPFTLNSVQVQSLNKAVKFLNDSGEVEAAQIVMALLLDKANLETPFRQKLLEQVNQTAEAWRLRLNQLIDDRQPFRLFYQSGKDKVSEFTARSAKIRLYDKRLYLEIWCDDADSREIPELAHNRCLRLDKIVNLLPASEKWRETIDYLEVHLHFLRGLAGNYESKPDEDVANEMVGDLRHVVKRVSSRFWLFREVFRYGKDCVIVSPQNVRDRFQQELIDLCRQYNLEIRD
>NC_019729.1|WP_015178939.1|6564684_6564900_+|hypothetical-protein
MHPVQLLPGAICEILASVTDTGVLTLADRYGLMAATFDDSLNDEERGCVNRLLRAVLRGRVKVVNELSAAF
>NC_019729.1|WP_015178938.1|6564105_6564420_-|glutaredoxin-3
MLDFLNPILGRKPDRIKANVEIYTWQTCPYCIRAKTLLWWKGVNFTEYKIDGDEAARKAMADRANGRRSVPQIFINNQHVGGCDDIHKLDAEGQLDPLLAQPAV
>NC_019729.1|WP_015178937.1|6562046_6563984_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MPIDFRNTNTVWASVLAETLQRLGLTTAVICPGSRSAPLTIAFAQNNKIETLPILDERSASFFALGIAKKSGLPTALICTSGTAAANFYPAIIEARESRIPLLIFTADRPPELRDCHAGQAIDQVKIYGNYPNWQAELAIPSASRGMLDYLRQTIVYAWERSQFPTPGPVHLNIPFRDPLVPVPDIAVEALETQFNPEDFFAGLEPIFAAETSTPPSPPLLRGGEESTMQQWQKCDRGIIIAGVAQPQLAEKYCSAIGQISKYLNWPVLAEGLSPVRNYAQLNPHLIPTYDLILRNRELADKLTPEIAIQIGDLPTSKELRNWLDKTQPKRYIIDPSHHNFDPLHGQTIHLRTSVENLATILTQVPPLIKGGLGGDRAPATPAISPQIPPLNKDESTQIPPLNQGESTQVPPLNKGGLGGVPTSPSNEYLQLWRNTEIQVRQTIDKKIATINNIIEPKVSWLLSQILPPATPIFIANSMPVRDVEFFWKQNNLEIKPFFNRGANGIDGTLSTALGVAHRNQSSIMLTGDLAFLHDTNGFLMKNKFVGHLTIVLINNNGGGIFEMLPVAKFDPPFEEFFATPQQINFALLCATYGVKHEVIEDWGQFKEKLNLLPNSGIRVLELQTDRRSDAKWRQDNLSKFAKDL
>NC_019729.1|WP_015178948.1|6575565_6576159_+|CRISPR-associated-protein-Cas4
MNDSDYISIASLNQYSYCPHRCWRMSCAGEFTDNQYTIEGTSLHDRVHTMGEINRDENWQVRAIWLKSEKYKLIGKSDLIESAEGELYPVEYKRGRKGEWDNDELQVCAQALCLEEMTGKTIATGYVYYAQSHQRQLVEISEGLRQEAIATITAIQFLLQTGTMPRPNYTKRCQGCSLYQQCLPQAADKVLRYQEAN
>NC_019729.1|WP_015178949.1|6576186_6577188_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTLYINQDDVFIGKTDERLNVKAKNQMLQDVPLIHLDGVVILGRATISPAAIAELLQRKIPLTFITDTGHYLGKLEPELSKNIFVRNAQWKAAGETPQAIHVVRGFIRGKMKNYRSSLSQTQREHSELNLASAIMQISNAIAKLDKTDNIDSLRAQEGAGSAAYFRVFNQLIRAEGFVFQPRHRPATDPVNSLMNFAYTLLRHDVQSAINIVGFDPYLGYLHMQRYGRAGLAFDLMEEFRPLVADSIILNAINRRILTPNDFTVEPLSNVVRLSETGRKEFLKLYEKKKQSEFKHPVLKRKCTYQEAFEIQGRMLAKYLMGEIDKYPPLVLY
>NC_019729.1|WP_015178950.1|6577190_6577466_+|CRISPR-associated-endonuclease-Cas2
MHILISYDISEDKRRIKIHKMLKSYGQWMQYSVFECADLSETQYAKLRSRLNKVIKPNEDSILFFPLCACCQGKIERIGGVVPVDRTIFFA
>NC_019729.1|WP_083888213.1|6579284_6579440_+|transposase
MVVMDHLTFDKSGRIQELIQTAGCRLLYLPPYSPEFNKIEQRRVLAKKSNS
>NC_019729.1|WP_015178951.1|6579564_6580683_+|alkene-reductase
MTTQTTSPLLLSPFKIGDLPLKNRVLMAPMTRSRAGEARMPNALIAEYYAQRASAGLIITEATVVSSQGNGWLNTPGIYSDEQGEAWKQVVTAVHARETPIFMQLWHCGRASHSSFHENNQLPVAASAIKINGEGIHTPLGKQPYETPRALETDEISLVVEDYRKAAERAKMAGFDGVEIHAANGYLIDTFLQTKTNHRTDSYGGSVENRYRFLKEIVEAIITVFPANRVGVRLSPNGIYNDMGSPEYREDFLYFAEQLNACDLAYLHLVDGLAFGFHELGTPMMISEFRDVFAGAIVGNCGYTQEQAETALSSKVADLIAFGRDFISNPDLVERFTNGWPLNPPAEVGVWYSFGPEGYIDFPTYQEPAAIS
>NC_019729.1|WP_015178952.1|6580874_6581132_-|hypothetical-protein
MVIRIWGNVLDLNWEPLTFAAKLEIGARRQEAGGRRQEAGGRRKEPEEVFLQVGDAGSQRAIKIKYDSNSDSYFEQVTIHLLGAG
>NC_019729.1|WP_015178953.1|6581213_6582221_+|protochlorophyllide-reductase
MAQNHKSTVIITGASSGVGLYGAKALADKGWHVVMACRDVRKAGDAARELGIPEGSFSIMEIDLGDLESVRRFARAFKASGRRLDALVCNAAIYMPLIKEPLRSPEGYELTMTTNHLGHFLLCNLMMENMKPSYYSDPRIVILGTVTHNPDELGGKIPPRPDLGKFEGFEAGFKDPISMVDGKKFEPVKAYKDSKVCNVLTMRELHRRFHESTGITFTSLYPGCVADTPLFRNHYPLFQKLFPLFQKNITGGYVSQELAGERLAMVVADPEYKQSGAYWSWGNRQKKDGKSFVQKVSPQARDDEKGERMWELSAKLVGLTDGAQMGAAAGAGRSA
>NC_019729.1|WP_015178955.1|6582855_6585018_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MAGRSQKLFLLAGIFGLVWLGKPAKTSASTVEILTSNVEDLAAVSSGDDRAFLPDTNLDKRQDLPVKNEETQLPAESERSAAAETPDLPPSAANSVDATSYTILKNRQDACEAGSEFDCGVGILPARKMLIDNGATSQPDRTFSTKTQETELFNRARKLEESIDSKKIDLGGDRASHLAQLPNPILPREPELPAPEPPQPPAPSPLQPTRPTPVESEIRPGIPGTIKVAGFEFEGNTAFSDRELAEVTQQFAGREITFAELIAAEAAVTQKYVAAGYINSGAVIPANQTFPREGGVVKIRIVEGGLDEIVITGNRRLNSNYVRSRLDRATRRPLNRYRLLEALQLLQLDPLIGNISAELQAGSRPENSRLEVRVKEADSFSAEVFADNNRSPSVGSFRRGVRINQANLLGLGDGLEVSYANTDGSNEFNGSYTVPVNARNGTIGFAASAASTNIIEEPFDAAQIEGKSRTYELTYRQPIVEKPDRTLALGLSFSRQESDTFLSGKRFALSAGANERGETRVSAVRFFQEYVQRSSSQVFAARSQFSLGTNLFGATANDSGPDSHFLAWRGQAQYVRLLAPETLLIVRSDIQLADRPLLSLEQIGIGGVQSVRGYRQDLLLTDSGAIASAEVRIPVWRVPEVQGLLQVAPFIDFGVGWNHSEEKPNPDSDKLLGAGLGLVWQMGDRLNVRLDYGIPLINARSGDRTLQEKGLYFRINYFAF
>NC_019729.1|WP_015178956.1|6585161_6585779_+|Uma2-family-endonuclease
MVQIKTKLTFAEFLEKYPEGSGIYELVNGEIVKVEATRAHKNVARFLVKSFDRESDRLGLDYIVDKDIVLRTVTASGQEQGRNPDVGVVKASVWNSNVRGYGALTEPIQLAVEVTSTNWEDDYVDKLDEYQRLGICEYWIVDYLAIASRAYLGNPKIPTVFVYSLENGSYLVQSFRGNERIISKTFPELEITVEQLVLSSQIQNI
>NC_019729.1|WP_051041562.1|6585885_6588834_+|S-layer-family-protein
MPVPQILYFIVRWAFCPPVSYSLLFAFLLLFPSKTFAQIIPDNTLGPESSRTVTDTINNLPSDRITGGAIRGVNLFHSLREFNIREGRGAYFENPSGIANIFTRVTGGNPSNILGTLGVLGNSNLFLINPKGIIFGPNARLDLRGSFIGSTADSVVFNNGVEFSSTNPQTSPLLTVNIPVGLRFRDNPGAIVNQSTALGKVNLPASPVPIPISDRVGLAVEPGQTLALIGGDIQLQGGNLTASGGQILLGSVASPGLVNFALTPAEQQPANLTVNYDNIQNFGNIQISNGSLINTSGIGGGRIELKGGNVALSGARIYALTLGNIDGRGIDITAQKLRVENGTQFSTLTLGDGAGGDINFRAADSVEMSGLGVEGYQQVAIKYLVSGTTDPFDPLMMLFNASAGSGSGGDITIDTGRLLFNNGVVGSGIAFGGGNGGNLIIRANTFEMVGSGINSGTAKESSGAGGSISVDVEKLIMRDGSILGTTSYSSGPSGNINIKAAESVELSNSGPTTVVSTGISTLSIASNGRAGNINVDTKRLTLSGGSAFTLGTGVLVGRFLFSQEGGSAGNLTVRATESVEISGISQLLSSGIQNASALTSGTLSSSRGGDIRIDTPSLTVRDGGIVSTSSLGVGDVGNITVNADRIEVSGSGNNGLFVSTIDASVGKIFGTNPNATANAGSLHLKADRLIVRDGATVTVQATGTGRAGNINIVANSIDLDNKARIDGTTVSGTGANINLQARDIQLRRNSQITTDAGTSDGGNININSNILLALPQENSDITANARTAGGGRVNIDVPNVFGFTAASREQVRNRLGLSDAQFAALQVSPTSLLPSSDIAAISQSGGPALQGAVTFSSVGVNPVQGLVELPQNVVNPAALIVANPCIEGAENEFTVTGRGGVPPSPNEVLSSAEEPFPWVEPAVGGSQQVESQRASIEIRPTEIIPAQGWVMDDRGQVRLVAYNSRGGASLLRPKPTGVCVPR

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Crispr_ID: NC_019729_61

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_61

6575290-6575472

TypeI-D

Consensus_repeat	Method
TCATCAATGATTAAATTACTTCTTCAGTCGGTTTCAACC	PILER-CR

2 spacers

cas6,cas3,csc1gr5,csc2gr7,cas10d,WYL,cas4,cas1,cas2

The CRISPR arrays of NC_019729_61

>merge|NC_019729|61|6575290-6575472|PILER-CR
ATGAATGATTAAATTGCTTCTTCAGTCGGTTTCAACCTTTGCGCTTACTGTTACCTACAAGCTCAAAATCTCATCAATGATTAAATTACTTCTTCAGTCGGTTTCAACGCAGTAATTCGTAAGCTTGGAGGTACGGCACATACTTCATCAATGATTAAATTACTTCTTCAGTCGGTTTCAACC

>NC_019729|61|13|6575290-6575472|PILER-CR
ATGAATGATTAAATTGCTTCTTCAGTCGGTTTCAACCTT	TGCGCTTACTGTTACCTACAAGCTCAAAATCTC
ATCAATGATTAAATTACTTCTTCAGTCGGTTTCAACGCA	GTAATTCGTAAGCTTGGAGGTACGGCACATACTTC
ATCAATGATTAAATTACTTCTTCAGTCGGTTTCAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178955.1\|6582855_6585018_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_019729.1\|WP_015178949.1\|6576186_6577188_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_019729.1\|WP_015178950.1\|6577190_6577466_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019729.1\|WP_015178952.1\|6580874_6581132_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178946.1\|6572020_6574297_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|274457
NC_019729.1\|WP_015178938.1\|6564105_6564420_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NC_019729.1\|WP_015178941.1\|6566349_6566805_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_019729.1\|WP_051041562.1\|6585885_6588834_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|225751
NC_019729.1\|WP_015178948.1\|6575565_6576159_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_019729.1\|WP_015178951.1\|6579564_6580683_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_019729.1\|WP_015178953.1\|6581213_6582221_+\|protochlorophyllide-reductase	unknown	unknown	gnl\|CDD\|180983
NC_019729.1\|WP_015178942.1\|6566801_6567230_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NC_019729.1\|WP_015178956.1\|6585161_6585779_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015178939.1\|6564684_6564900_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015178944.1\|6570043_6571060_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_019729.1\|WP_015178945.1\|6571236_6572040_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_019729.1\|WP_015178940.1\|6565073_6565925_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019729.1\|WP_015178943.1\|6567290_6570032_+\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	unknown
NC_019729.1\|WP_015178947.1\|6574300_6575143_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019729.1\|WP_083888213.1\|6579284_6579440_+\|transposase	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178949.1\|6576186_6577188_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	1.28156e-133
NC_019729.1\|WP_015178950.1\|6577190_6577466_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.78405e-33
NC_019729.1\|WP_015178946.1\|6572020_6574297_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|274457	TIGR03158, cas3_cyano, CRISPR-associated helicase Cas3, subtype CYANO. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.	1.0778e-100
NC_019729.1\|WP_015178938.1\|6564105_6564420_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	7.34736e-44
NC_019729.1\|WP_015178941.1\|6566349_6566805_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.61467e-16
NC_019729.1\|WP_051041562.1\|6585885_6588834_+\|S-layer-family-protein	gnl\|CDD\|225751	COG3210, FhaB, Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion].	3.31778e-23
NC_019729.1\|WP_015178948.1\|6575565_6576159_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	7.0752e-57
NC_019729.1\|WP_015178951.1\|6579564_6580683_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NC_019729.1\|WP_015178953.1\|6581213_6582221_+\|protochlorophyllide-reductase	gnl\|CDD\|180983	PRK07453, PRK07453, protochlorophyllide reductase.	0
NC_019729.1\|WP_015178940.1\|6565073_6565925_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	2.37219e-11
NC_019729.1\|WP_015178956.1\|6585161_6585779_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.32334e-29
NC_019729.1\|WP_015178944.1\|6570043_6571060_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	1.00848e-173
NC_019729.1\|WP_015178945.1\|6571236_6572040_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	8.57477e-68
NC_019729.1\|WP_015178942.1\|6566801_6567230_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	3.97303e-18
NC_019729.1\|WP_015178947.1\|6574300_6575143_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.75071e-47
NC_019729.1\|WP_015178955.1\|6582855_6585018_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.37766e-110
NC_019729.1\|WP_083888213.1\|6579284_6579440_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.10807e-12

>NC_019729.1|WP_015178947.1|6574300_6575143_+|CRISPR-associated-endoribonuclease-Cas6
MPHSLVLNILPLAPIPPGYLTGRHLHALFLTLVSSVDKKLGDRLHDAAAQKSFTLSPLQTKKCPFKKHHFLQWEHTEPIPEHTLCWWRITLLDDTLFGQLTNLWLNLNPSKPWHLGPADLMIAKILGTPQVDQPWANACSYSQLYEQASETNRLIAFSFATPTTFRQGKFDSVIPTRDCVFNSLLSRWNKYSPIAIPDLSFDALFSSFVNIRSERLTNYQSDFVGMVGEVSYRILGDVEPLVIKQINALADFAVYCGVGRKTPMGMGMTRRIVVKKVLDN
>NC_019729.1|WP_015178946.1|6572020_6574297_+|type-I-D-CRISPR-associated-helicase-Cas3'
MDHLKIKLEPASISACPQLPKPLEFMGQALQHQVDVYEASENNDIILDLAPTGTGKTKAGLSVLLHNSQRNAIYIAPTNALIDQQTEAAEKFVLDARLPHLVKAASAKQVNSWPDDRVGKRSGEKIYNVLREPATIFPECGGGRPILLVTNPDIFYYAAFFQYNPLDRGNIASEFYSSFSTVIFDEFHLYDAKQLVSLFFYLALSKEFGYFQYKRKIVLLTATPEPACEEALNVLGKNGVKIARIDGKSQISYLRPSQTEVNLEIRKQVDKETTIAEIVQEVLRRLRENPDQNGAVILDAKDTLGRISDQLRDRGFSDFCGRITGDTPKEERPLAAQKQVILATSTVDVGFNFDRENETPRQNLDWLIFSTRDRFSFWQRIGRVGRVLGKTQTEIPSEAIAYLPDRAWEQGIEQLDCFGGRKALTEMLESLDCMKRPFLDIYWRSEAFLEIAKPLLELEIVFDNLPEASLVMQLYQTMQIVLGGKRDWNSYRRRMKVLQGAENVAKSTIKQIQKEWQYIKGGQNCVISFMQANYPEDWAEIDSGRTSIELVEEKIRKNQKVAEELKEYATILKASYAPLFKFRESLFENVKIYDPKNFLLDEVGETNLDPIHLLRFFEFASDENGIVLTDRATETYGLKFALQVADLEDFANHYLGKLYAFKNCKIERTIGDNVRPTALISQLTPPLMPGVIVREHRKNRWAILKLRKQGIECYPITVKDSFANEQEYTFFPSLSGILAIASAGVTLKCPDNQEFWVI
>NC_019729.1|WP_015178945.1|6571236_6572040_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MPQLELFRTSFTSIIAYQTARLVELWCAEPVFFASRELSDTYYTEGAIGNYALAYALGWARSPYRLTGQDTSRPRYIEDLTPLSGNSYILPAWPAGGTLSFRFERFNALSDSYWYAMTNNRVATAREDLPLSRTGKKPSTYRPSNFPQTGRLRVIERGNRFQTLVFGDRELPEYIRVGKFTSKVRVEIVKKLDFVQLPRGDYRCNTYLSAADLPANIELLAFDLISMPPASLLKNLSFRGEALQAGDFILPANLEFCGGNNNGSSEN
>NC_019729.1|WP_015178944.1|6570043_6571060_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSIAKLQPFLAPSYENFPKGRTIGIVVLRTTQSETIFRTEGTGEPMCNEYVQAGIEDTESIPRLVMTKRKQVAPERRKGREFLRSHNLLYTAPKTDAICALNTNAPCEMCVDCFLYGFAAGGEGAQKSRVWTEDAFSVLHSTELIADRTINAIFETGTMRDEKGNASTALNTSEYIKPGVHFLDIVTLKDVTADELRYTLGNILLTSRYGAVSSRVGRMDNQILGVFGGIAELPSSLELVQGVYDKLKAQNTALEHPLKTASLVDATQEIIGSWTNKRGISMQLSPAECDALIADVDRHWSLPEQETFLKRLDESYAPWRKVKSENKTKGRGKKSEES
>NC_019729.1|WP_015178943.1|6567290_6570032_+|hypothetical-protein
MSTKSLLFDEETTTLDERYFAEVRPKLYQLHTNHGQYGTRQGRTLAEHLDSACQFVLTVSKIAGVPDDKRACILAATAVHDLNKLADDGRNVKTLARDRPFLLQQLDRACVSKFAQTDEELELVRRLIERHSGHNASDPMRFLPEDPNIKRWAAMLIGGDLFDLGIDEETRIRKVENELTVALQRDSKLFQVTLSEDRGYLTSLLLSACEEVLHDRNLHTLAIDPNGQIFVGEAFPDGDLSLILAQKWQKKIDRVFSSNVEQLVNATKDGIKIDPQAIQQNPEATLDEVDKLLLKKASGYKVEKVAKDIDKYGGDAGENAVTAAAAVGLHPVSNADEFAISEGLKTAYLSYRAAELSPKEVWDRIAAQVGLSPEQRAALEPFNAQYGRCLFAAKSIEGDREQKLEKVFAALEDSFQLRGKAEEIDVSEELVNAVRQLLNFSTPANWQGFNELTAYVEANPRQRCSLGTTSLQIGELSSPKMPPGTKVQAFSNRLPGGMIAEPKRRADNLSALGYQLMAVGANFPNSVKQDPLYLHFALPKGSSIELRIIWQNFLRNTAAQNEDGTVTVDEIKLYRENEIVFQSNKMVGLALPKRPEFINSTVTIPVLWGEVNNSLALLKSLRLALEMSLAFDLGFPFVLGANLEVEPTWDFFGKVEGIPSSLQPLLGSGQYRRNGHLSKEERRTAVTAEQVLERLRCIGKLAISVASIQKKDDCLYDLARAATRPLSFYYVLLRWLLREQDDPNLEAVWSRIKEPLNTLLRSLMSEEHDRVSSYLKQAAHIAEFAKLRGSSFRRTAQTEPFSEFIKAVRSRKSHMDWDTVFASLVQQYHNRLDRIREHGAGATKYEQIKQFYQVLQQLFEEVYHSRPERLLTDSKTLEAAYLFFLQEARQELKSKTESATTSKTESESTPANN
>NC_019729.1|WP_015178942.1|6566801_6567230_+|DUF86-domain-containing-protein
MSIQKTVVLTRLKFIGEYLLELRRFESMSLENYLASFDSKIISERIMELIVQAAVDINEHILTRGMKVNSDSNRESFVQLGSYGIITPEVSEELVKSAGLRNILAHRYLEIDYVMLFNSVQVALIYYPIYIEQVAEYISQKK
>NC_019729.1|WP_015178941.1|6566349_6566805_+|nucleotidyltransferase-domain-containing-protein
MLQISPTLTELQEIASQLPEQIPYLKMLILFGSRARGDTHAKSDWDFAALYDEKLREESCNNRGFAWFEVPGILGEAFSINSDEIDVVELNRCSPLIANFIARDGKLIYEQESGQFEQFVKTHLMNELELQELERQLYQSIDDFLKDWRSV
>NC_019729.1|WP_015178940.1|6565073_6565925_-|WYL-domain-containing-protein
MPRKKETITLSIPAGTKEQLEAIALRLGILWGKSPSVSGLLVAVAQQKIEVGEPFTLNSVQVQSLNKAVKFLNDSGEVEAAQIVMALLLDKANLETPFRQKLLEQVNQTAEAWRLRLNQLIDDRQPFRLFYQSGKDKVSEFTARSAKIRLYDKRLYLEIWCDDADSREIPELAHNRCLRLDKIVNLLPASEKWRETIDYLEVHLHFLRGLAGNYESKPDEDVANEMVGDLRHVVKRVSSRFWLFREVFRYGKDCVIVSPQNVRDRFQQELIDLCRQYNLEIRD
>NC_019729.1|WP_015178939.1|6564684_6564900_+|hypothetical-protein
MHPVQLLPGAICEILASVTDTGVLTLADRYGLMAATFDDSLNDEERGCVNRLLRAVLRGRVKVVNELSAAF
>NC_019729.1|WP_015178938.1|6564105_6564420_-|glutaredoxin-3
MLDFLNPILGRKPDRIKANVEIYTWQTCPYCIRAKTLLWWKGVNFTEYKIDGDEAARKAMADRANGRRSVPQIFINNQHVGGCDDIHKLDAEGQLDPLLAQPAV
>NC_019729.1|WP_015178948.1|6575565_6576159_+|CRISPR-associated-protein-Cas4
MNDSDYISIASLNQYSYCPHRCWRMSCAGEFTDNQYTIEGTSLHDRVHTMGEINRDENWQVRAIWLKSEKYKLIGKSDLIESAEGELYPVEYKRGRKGEWDNDELQVCAQALCLEEMTGKTIATGYVYYAQSHQRQLVEISEGLRQEAIATITAIQFLLQTGTMPRPNYTKRCQGCSLYQQCLPQAADKVLRYQEAN
>NC_019729.1|WP_015178949.1|6576186_6577188_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTLYINQDDVFIGKTDERLNVKAKNQMLQDVPLIHLDGVVILGRATISPAAIAELLQRKIPLTFITDTGHYLGKLEPELSKNIFVRNAQWKAAGETPQAIHVVRGFIRGKMKNYRSSLSQTQREHSELNLASAIMQISNAIAKLDKTDNIDSLRAQEGAGSAAYFRVFNQLIRAEGFVFQPRHRPATDPVNSLMNFAYTLLRHDVQSAINIVGFDPYLGYLHMQRYGRAGLAFDLMEEFRPLVADSIILNAINRRILTPNDFTVEPLSNVVRLSETGRKEFLKLYEKKKQSEFKHPVLKRKCTYQEAFEIQGRMLAKYLMGEIDKYPPLVLY
>NC_019729.1|WP_015178950.1|6577190_6577466_+|CRISPR-associated-endonuclease-Cas2
MHILISYDISEDKRRIKIHKMLKSYGQWMQYSVFECADLSETQYAKLRSRLNKVIKPNEDSILFFPLCACCQGKIERIGGVVPVDRTIFFA
>NC_019729.1|WP_083888213.1|6579284_6579440_+|transposase
MVVMDHLTFDKSGRIQELIQTAGCRLLYLPPYSPEFNKIEQRRVLAKKSNS
>NC_019729.1|WP_015178951.1|6579564_6580683_+|alkene-reductase
MTTQTTSPLLLSPFKIGDLPLKNRVLMAPMTRSRAGEARMPNALIAEYYAQRASAGLIITEATVVSSQGNGWLNTPGIYSDEQGEAWKQVVTAVHARETPIFMQLWHCGRASHSSFHENNQLPVAASAIKINGEGIHTPLGKQPYETPRALETDEISLVVEDYRKAAERAKMAGFDGVEIHAANGYLIDTFLQTKTNHRTDSYGGSVENRYRFLKEIVEAIITVFPANRVGVRLSPNGIYNDMGSPEYREDFLYFAEQLNACDLAYLHLVDGLAFGFHELGTPMMISEFRDVFAGAIVGNCGYTQEQAETALSSKVADLIAFGRDFISNPDLVERFTNGWPLNPPAEVGVWYSFGPEGYIDFPTYQEPAAIS
>NC_019729.1|WP_015178952.1|6580874_6581132_-|hypothetical-protein
MVIRIWGNVLDLNWEPLTFAAKLEIGARRQEAGGRRQEAGGRRKEPEEVFLQVGDAGSQRAIKIKYDSNSDSYFEQVTIHLLGAG
>NC_019729.1|WP_015178953.1|6581213_6582221_+|protochlorophyllide-reductase
MAQNHKSTVIITGASSGVGLYGAKALADKGWHVVMACRDVRKAGDAARELGIPEGSFSIMEIDLGDLESVRRFARAFKASGRRLDALVCNAAIYMPLIKEPLRSPEGYELTMTTNHLGHFLLCNLMMENMKPSYYSDPRIVILGTVTHNPDELGGKIPPRPDLGKFEGFEAGFKDPISMVDGKKFEPVKAYKDSKVCNVLTMRELHRRFHESTGITFTSLYPGCVADTPLFRNHYPLFQKLFPLFQKNITGGYVSQELAGERLAMVVADPEYKQSGAYWSWGNRQKKDGKSFVQKVSPQARDDEKGERMWELSAKLVGLTDGAQMGAAAGAGRSA
>NC_019729.1|WP_015178955.1|6582855_6585018_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MAGRSQKLFLLAGIFGLVWLGKPAKTSASTVEILTSNVEDLAAVSSGDDRAFLPDTNLDKRQDLPVKNEETQLPAESERSAAAETPDLPPSAANSVDATSYTILKNRQDACEAGSEFDCGVGILPARKMLIDNGATSQPDRTFSTKTQETELFNRARKLEESIDSKKIDLGGDRASHLAQLPNPILPREPELPAPEPPQPPAPSPLQPTRPTPVESEIRPGIPGTIKVAGFEFEGNTAFSDRELAEVTQQFAGREITFAELIAAEAAVTQKYVAAGYINSGAVIPANQTFPREGGVVKIRIVEGGLDEIVITGNRRLNSNYVRSRLDRATRRPLNRYRLLEALQLLQLDPLIGNISAELQAGSRPENSRLEVRVKEADSFSAEVFADNNRSPSVGSFRRGVRINQANLLGLGDGLEVSYANTDGSNEFNGSYTVPVNARNGTIGFAASAASTNIIEEPFDAAQIEGKSRTYELTYRQPIVEKPDRTLALGLSFSRQESDTFLSGKRFALSAGANERGETRVSAVRFFQEYVQRSSSQVFAARSQFSLGTNLFGATANDSGPDSHFLAWRGQAQYVRLLAPETLLIVRSDIQLADRPLLSLEQIGIGGVQSVRGYRQDLLLTDSGAIASAEVRIPVWRVPEVQGLLQVAPFIDFGVGWNHSEEKPNPDSDKLLGAGLGLVWQMGDRLNVRLDYGIPLINARSGDRTLQEKGLYFRINYFAF
>NC_019729.1|WP_015178956.1|6585161_6585779_+|Uma2-family-endonuclease
MVQIKTKLTFAEFLEKYPEGSGIYELVNGEIVKVEATRAHKNVARFLVKSFDRESDRLGLDYIVDKDIVLRTVTASGQEQGRNPDVGVVKASVWNSNVRGYGALTEPIQLAVEVTSTNWEDDYVDKLDEYQRLGICEYWIVDYLAIASRAYLGNPKIPTVFVYSLENGSYLVQSFRGNERIISKTFPELEITVEQLVLSSQIQNI
>NC_019729.1|WP_051041562.1|6585885_6588834_+|S-layer-family-protein
MPVPQILYFIVRWAFCPPVSYSLLFAFLLLFPSKTFAQIIPDNTLGPESSRTVTDTINNLPSDRITGGAIRGVNLFHSLREFNIREGRGAYFENPSGIANIFTRVTGGNPSNILGTLGVLGNSNLFLINPKGIIFGPNARLDLRGSFIGSTADSVVFNNGVEFSSTNPQTSPLLTVNIPVGLRFRDNPGAIVNQSTALGKVNLPASPVPIPISDRVGLAVEPGQTLALIGGDIQLQGGNLTASGGQILLGSVASPGLVNFALTPAEQQPANLTVNYDNIQNFGNIQISNGSLINTSGIGGGRIELKGGNVALSGARIYALTLGNIDGRGIDITAQKLRVENGTQFSTLTLGDGAGGDINFRAADSVEMSGLGVEGYQQVAIKYLVSGTTDPFDPLMMLFNASAGSGSGGDITIDTGRLLFNNGVVGSGIAFGGGNGGNLIIRANTFEMVGSGINSGTAKESSGAGGSISVDVEKLIMRDGSILGTTSYSSGPSGNINIKAAESVELSNSGPTTVVSTGISTLSIASNGRAGNINVDTKRLTLSGGSAFTLGTGVLVGRFLFSQEGGSAGNLTVRATESVEISGISQLLSSGIQNASALTSGTLSSSRGGDIRIDTPSLTVRDGGIVSTSSLGVGDVGNITVNADRIEVSGSGNNGLFVSTIDASVGKIFGTNPNATANAGSLHLKADRLIVRDGATVTVQATGTGRAGNINIVANSIDLDNKARIDGTTVSGTGANINLQARDIQLRRNSQITTDAGTSDGGNININSNILLALPQENSDITANARTAGGGRVNIDVPNVFGFTAASREQVRNRLGLSDAQFAALQVSPTSLLPSSDIAAISQSGGPALQGAVTFSSVGVNPVQGLVELPQNVVNPAALIVANPCIEGAENEFTVTGRGGVPPSPNEVLSSAEEPFPWVEPAVGGSQQVESQRASIEIRPTEIIPAQGWVMDDRGQVRLVAYNSRGGASLLRPKPTGVCVPR

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Crispr_ID: NC_019729_62

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_62

6577718-6579210

TypeI-D

I-D,II-B

Consensus_repeat	Method
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	PILER-CR
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CRISPRCasFinder
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CRT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	PILER-CR

20 spacers

cas2,cas1,cas4,cas6,cas3,csc1gr5,csc2gr7,cas10d

The CRISPR arrays of NC_019729_62

>merge|NC_019729|62|6577718-6579210|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTCAACAGCAGCACCGCAGCCCAACAGCTCCAATCCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTCTGCAACGTATTTTTCTGCTAATCGAAAACCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACCGCTCCTTCAATTCCAGATGTAAAATTATCGGGGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACCAATATCATTTTTAGAAATATTGGAAATATTTTGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACGCAATTCAGCAGGTGTGCCAGCTAATCGATAAAATTCGGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTGACGAAAGTTTGGCGAAATATTCTCAGGCTCACGCCGATCGCATGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACGCAATTCTGGTAAACCTACCAAGCGGCATTTGTGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTTGAACTCAATCGCGCCGCTGGGTTCTGACTCAAGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAAGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTGAGCAAATAAATCACTTCTCAAACACAGAATTTTAGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTATCCCTGACGGTAACAGTTGGTCTGTAACAGTTGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACATCTGCAATTCCAATTCACTTTACCTAATAGGAGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTTTCCAGCCTCGGATAACTGATTCTAGTAACTCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTTGCCAAGCATTGATAGCAAAATCGTCCTTGAGGGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTTCATAGATGTGGAATTTGACGTTTTCCATGAGCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGAGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTTTTCCTTATTGATGTTAACACGCTTACAGCTAAAGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACCTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGCGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC

>NC_019729|62|14|6577718-6578110|PILER-CR
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCAACAGCAGCACCGCAGCCCAACAGCTCCAATCC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCTGCAACGTATTTTTCTGCTAATCGAAAACC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CGCTCCTTCAATTCCAGATGTAAAATTATCGGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CAATATCATTTTTAGAAATATTGGAAATATTTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	GCAATTCAGCAGGTGTGCCAGCTAATCGATAAAATTCG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTGACGAAAGTTTGGCGAAATATTCTCAGGCTCACGCCGATCGCATGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACGCAATTCTGGTAAACCTACCAAGCGGCATTTGTGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGAACTCAATCGCGCCGCTGGGTTCTGACTCAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGAGCAAATAAATCACTTCTCAAACACAGAATTTTA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TATCCCTGACGGTAACAGTTGGTCTGTAACAGTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ATCTGCAATTCCAATTCACTTTACCTAATAGGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTCCAGCCTCGGATAACTGATTCTAGTAACTC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGCCAAGCATTGATAGCAAAATCGTCCTTGAGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCATAGATGTGGAATTTGACGTTTTCCATGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTTCCTTATTGATGTTAACACGCTTACAGCTAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGC


>NC_019729|62|59|6577718-6579210|CRISPRCasFinder
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCAACAGCAGCACCGCAGCCCAACAGCTCCAATCC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCTGCAACGTATTTTTCTGCTAATCGAAAACC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CGCTCCTTCAATTCCAGATGTAAAATTATCGGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CAATATCATTTTTAGAAATATTGGAAATATTTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	GCAATTCAGCAGGTGTGCCAGCTAATCGATAAAATTCG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGACGAAAGTTTGGCGAAATATTCTCAGGCTCACGCCGATCGCAT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	GCAATTCTGGTAAACCTACCAAGCGGCATTTGT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGAACTCAATCGCGCCGCTGGGTTCTGACTCAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGAGCAAATAAATCACTTCTCAAACACAGAATTTTA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TATCCCTGACGGTAACAGTTGGTCTGTAACAGTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ATCTGCAATTCCAATTCACTTTACCTAATAGGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTCCAGCCTCGGATAACTGATTCTAGTAACTC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGCCAAGCATTGATAGCAAAATCGTCCTTGAGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCATAGATGTGGAATTTGACGTTTTCCATGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTTCCTTATTGATGTTAACACGCTTACAGCTAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC

>NC_019729|62|9|6577718-6579210|CRT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCAACAGCAGCACCGCAGCCCAACAGCTCCAATCC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCTGCAACGTATTTTTCTGCTAATCGAAAACC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CGCTCCTTCAATTCCAGATGTAAAATTATCGGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CAATATCATTTTTAGAAATATTGGAAATATTTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	GCAATTCAGCAGGTGTGCCAGCTAATCGATAAAATTCG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGACGAAAGTTTGGCGAAATATTCTCAGGCTCACGCCGATCGCAT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	GCAATTCTGGTAAACCTACCAAGCGGCATTTGT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGAACTCAATCGCGCCGCTGGGTTCTGACTCAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGAGCAAATAAATCACTTCTCAAACACAGAATTTTA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TATCCCTGACGGTAACAGTTGGTCTGTAACAGTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ATCTGCAATTCCAATTCACTTTACCTAATAGGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTCCAGCCTCGGATAACTGATTCTAGTAACTC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGCCAAGCATTGATAGCAAAATCGTCCTTGAGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCATAGATGTGGAATTTGACGTTTTCCATGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTTCCTTATTGATGTTAACACGCTTACAGCTAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC

>NC_019729|62|15|6578226-6579210|PILER-CR
	TCAACAGCAGCACCGCAGCCCAACAGCTCCAATCC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TCTGCAACGTATTTTTCTGCTAATCGAAAACC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CGCTCCTTCAATTCCAGATGTAAAATTATCGGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CAATATCATTTTTAGAAATATTGGAAATATTTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	GCAATTCAGCAGGTGTGCCAGCTAATCGATAAAATTCG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACTGACGAAAGTTTGGCGAAATATTCTCAGGCTCACGCCGATCGCATGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAACGCAATTCTGGTAAACCTACCAAGCGGCATTTGTGCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGAACTCAATCGCGCCGCTGGGTTCTGACTCAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TGAGCAAATAAATCACTTCTCAAACACAGAATTTTA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TATCCCTGACGGTAACAGTTGGTCTGTAACAGTT
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	ATCTGCAATTCCAATTCACTTTACCTAATAGGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTCCAGCCTCGGATAACTGATTCTAGTAACTC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTGCCAAGCATTGATAGCAAAATCGTCCTTGAGG
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCATAGATGTGGAATTTGACGTTTTCCATGAGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	TTTTCCTTATTGATGTTAACACGCTTACAGCTAAA
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC	CTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGC
GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015178949.1\|6576186_6577188_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_019729.1\|WP_015178950.1\|6577190_6577466_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019729.1\|WP_015178941.1\|6566349_6566805_+\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_019729.1\|WP_051041562.1\|6585885_6588834_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|225751
NC_019729.1\|WP_015178944.1\|6570043_6571060_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_019729.1\|WP_015178953.1\|6581213_6582221_+\|protochlorophyllide-reductase	unknown	unknown	gnl\|CDD\|180983
NC_019729.1\|WP_015178942.1\|6566801_6567230_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|366864
NC_019729.1\|WP_015178956.1\|6585161_6585779_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015178948.1\|6575565_6576159_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_019729.1\|WP_015178943.1\|6567290_6570032_+\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	unknown
NC_019729.1\|WP_015178955.1\|6582855_6585018_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_019729.1\|WP_015178946.1\|6572020_6574297_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|274457
NC_019729.1\|WP_015178945.1\|6571236_6572040_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_019729.1\|WP_015178960.1\|6594922_6595864_+\|carotenoid-biosynthesis-protein	unknown	unknown	gnl\|CDD\|367884
NC_019729.1\|WP_015178958.1\|6589002_6591924_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|273865
NC_019729.1\|WP_015178951.1\|6579564_6580683_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_019729.1\|WP_015178959.1\|6592044_6594660_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227328
NC_019729.1\|WP_015178947.1\|6574300_6575143_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019729.1\|WP_015178952.1\|6580874_6581132_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_083888213.1\|6579284_6579440_+\|transposase	unknown	unknown	gnl\|CDD\|315923

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015178949.1\|6576186_6577188_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	1.28156e-133
NC_019729.1\|WP_015178950.1\|6577190_6577466_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.78405e-33
NC_019729.1\|WP_015178941.1\|6566349_6566805_+\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.61467e-16
NC_019729.1\|WP_051041562.1\|6585885_6588834_+\|S-layer-family-protein	gnl\|CDD\|225751	COG3210, FhaB, Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion].	3.31778e-23
NC_019729.1\|WP_015178944.1\|6570043_6571060_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	1.00848e-173
NC_019729.1\|WP_015178953.1\|6581213_6582221_+\|protochlorophyllide-reductase	gnl\|CDD\|180983	PRK07453, PRK07453, protochlorophyllide reductase.	0
NC_019729.1\|WP_015178942.1\|6566801_6567230_+\|DUF86-domain-containing-protein	gnl\|CDD\|366864	pfam01934, DUF86, Protein of unknown function DUF86. The function of members of this family is unknown.	3.97303e-18
NC_019729.1\|WP_015178956.1\|6585161_6585779_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.32334e-29
NC_019729.1\|WP_015178948.1\|6575565_6576159_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	7.0752e-57
NC_019729.1\|WP_015178960.1\|6594922_6595864_+\|carotenoid-biosynthesis-protein	gnl\|CDD\|367884	pfam04240, Caroten_synth, Carotenoid biosynthesis protein. The representative member of this family is CruF, a C50 carotenoid 2',3'-hydratase involved in the synthesis of the C50 carotenoid bacterioruberin in the halophilic archaeon Haloarcula japonica.	4.83086e-79
NC_019729.1\|WP_015178946.1\|6572020_6574297_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|274457	TIGR03158, cas3_cyano, CRISPR-associated helicase Cas3, subtype CYANO. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.	1.0778e-100
NC_019729.1\|WP_015178945.1\|6571236_6572040_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	8.57477e-68
NC_019729.1\|WP_015178958.1\|6589002_6591924_+\|S-layer-family-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	2.17253e-22
NC_019729.1\|WP_083888213.1\|6579284_6579440_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.10807e-12
NC_019729.1\|WP_015178959.1\|6592044_6594660_+\|CHAT-domain-containing-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	1.28104e-144
NC_019729.1\|WP_015178947.1\|6574300_6575143_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.75071e-47
NC_019729.1\|WP_015178955.1\|6582855_6585018_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.37766e-110
NC_019729.1\|WP_015178951.1\|6579564_6580683_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0

>NC_019729.1|WP_015178950.1|6577190_6577466_+|CRISPR-associated-endonuclease-Cas2
MHILISYDISEDKRRIKIHKMLKSYGQWMQYSVFECADLSETQYAKLRSRLNKVIKPNEDSILFFPLCACCQGKIERIGGVVPVDRTIFFA
>NC_019729.1|WP_015178949.1|6576186_6577188_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTLYINQDDVFIGKTDERLNVKAKNQMLQDVPLIHLDGVVILGRATISPAAIAELLQRKIPLTFITDTGHYLGKLEPELSKNIFVRNAQWKAAGETPQAIHVVRGFIRGKMKNYRSSLSQTQREHSELNLASAIMQISNAIAKLDKTDNIDSLRAQEGAGSAAYFRVFNQLIRAEGFVFQPRHRPATDPVNSLMNFAYTLLRHDVQSAINIVGFDPYLGYLHMQRYGRAGLAFDLMEEFRPLVADSIILNAINRRILTPNDFTVEPLSNVVRLSETGRKEFLKLYEKKKQSEFKHPVLKRKCTYQEAFEIQGRMLAKYLMGEIDKYPPLVLY
>NC_019729.1|WP_015178948.1|6575565_6576159_+|CRISPR-associated-protein-Cas4
MNDSDYISIASLNQYSYCPHRCWRMSCAGEFTDNQYTIEGTSLHDRVHTMGEINRDENWQVRAIWLKSEKYKLIGKSDLIESAEGELYPVEYKRGRKGEWDNDELQVCAQALCLEEMTGKTIATGYVYYAQSHQRQLVEISEGLRQEAIATITAIQFLLQTGTMPRPNYTKRCQGCSLYQQCLPQAADKVLRYQEAN
>NC_019729.1|WP_015178947.1|6574300_6575143_+|CRISPR-associated-endoribonuclease-Cas6
MPHSLVLNILPLAPIPPGYLTGRHLHALFLTLVSSVDKKLGDRLHDAAAQKSFTLSPLQTKKCPFKKHHFLQWEHTEPIPEHTLCWWRITLLDDTLFGQLTNLWLNLNPSKPWHLGPADLMIAKILGTPQVDQPWANACSYSQLYEQASETNRLIAFSFATPTTFRQGKFDSVIPTRDCVFNSLLSRWNKYSPIAIPDLSFDALFSSFVNIRSERLTNYQSDFVGMVGEVSYRILGDVEPLVIKQINALADFAVYCGVGRKTPMGMGMTRRIVVKKVLDN
>NC_019729.1|WP_015178946.1|6572020_6574297_+|type-I-D-CRISPR-associated-helicase-Cas3'
MDHLKIKLEPASISACPQLPKPLEFMGQALQHQVDVYEASENNDIILDLAPTGTGKTKAGLSVLLHNSQRNAIYIAPTNALIDQQTEAAEKFVLDARLPHLVKAASAKQVNSWPDDRVGKRSGEKIYNVLREPATIFPECGGGRPILLVTNPDIFYYAAFFQYNPLDRGNIASEFYSSFSTVIFDEFHLYDAKQLVSLFFYLALSKEFGYFQYKRKIVLLTATPEPACEEALNVLGKNGVKIARIDGKSQISYLRPSQTEVNLEIRKQVDKETTIAEIVQEVLRRLRENPDQNGAVILDAKDTLGRISDQLRDRGFSDFCGRITGDTPKEERPLAAQKQVILATSTVDVGFNFDRENETPRQNLDWLIFSTRDRFSFWQRIGRVGRVLGKTQTEIPSEAIAYLPDRAWEQGIEQLDCFGGRKALTEMLESLDCMKRPFLDIYWRSEAFLEIAKPLLELEIVFDNLPEASLVMQLYQTMQIVLGGKRDWNSYRRRMKVLQGAENVAKSTIKQIQKEWQYIKGGQNCVISFMQANYPEDWAEIDSGRTSIELVEEKIRKNQKVAEELKEYATILKASYAPLFKFRESLFENVKIYDPKNFLLDEVGETNLDPIHLLRFFEFASDENGIVLTDRATETYGLKFALQVADLEDFANHYLGKLYAFKNCKIERTIGDNVRPTALISQLTPPLMPGVIVREHRKNRWAILKLRKQGIECYPITVKDSFANEQEYTFFPSLSGILAIASAGVTLKCPDNQEFWVI
>NC_019729.1|WP_015178945.1|6571236_6572040_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MPQLELFRTSFTSIIAYQTARLVELWCAEPVFFASRELSDTYYTEGAIGNYALAYALGWARSPYRLTGQDTSRPRYIEDLTPLSGNSYILPAWPAGGTLSFRFERFNALSDSYWYAMTNNRVATAREDLPLSRTGKKPSTYRPSNFPQTGRLRVIERGNRFQTLVFGDRELPEYIRVGKFTSKVRVEIVKKLDFVQLPRGDYRCNTYLSAADLPANIELLAFDLISMPPASLLKNLSFRGEALQAGDFILPANLEFCGGNNNGSSEN
>NC_019729.1|WP_015178944.1|6570043_6571060_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSIAKLQPFLAPSYENFPKGRTIGIVVLRTTQSETIFRTEGTGEPMCNEYVQAGIEDTESIPRLVMTKRKQVAPERRKGREFLRSHNLLYTAPKTDAICALNTNAPCEMCVDCFLYGFAAGGEGAQKSRVWTEDAFSVLHSTELIADRTINAIFETGTMRDEKGNASTALNTSEYIKPGVHFLDIVTLKDVTADELRYTLGNILLTSRYGAVSSRVGRMDNQILGVFGGIAELPSSLELVQGVYDKLKAQNTALEHPLKTASLVDATQEIIGSWTNKRGISMQLSPAECDALIADVDRHWSLPEQETFLKRLDESYAPWRKVKSENKTKGRGKKSEES
>NC_019729.1|WP_015178943.1|6567290_6570032_+|hypothetical-protein
MSTKSLLFDEETTTLDERYFAEVRPKLYQLHTNHGQYGTRQGRTLAEHLDSACQFVLTVSKIAGVPDDKRACILAATAVHDLNKLADDGRNVKTLARDRPFLLQQLDRACVSKFAQTDEELELVRRLIERHSGHNASDPMRFLPEDPNIKRWAAMLIGGDLFDLGIDEETRIRKVENELTVALQRDSKLFQVTLSEDRGYLTSLLLSACEEVLHDRNLHTLAIDPNGQIFVGEAFPDGDLSLILAQKWQKKIDRVFSSNVEQLVNATKDGIKIDPQAIQQNPEATLDEVDKLLLKKASGYKVEKVAKDIDKYGGDAGENAVTAAAAVGLHPVSNADEFAISEGLKTAYLSYRAAELSPKEVWDRIAAQVGLSPEQRAALEPFNAQYGRCLFAAKSIEGDREQKLEKVFAALEDSFQLRGKAEEIDVSEELVNAVRQLLNFSTPANWQGFNELTAYVEANPRQRCSLGTTSLQIGELSSPKMPPGTKVQAFSNRLPGGMIAEPKRRADNLSALGYQLMAVGANFPNSVKQDPLYLHFALPKGSSIELRIIWQNFLRNTAAQNEDGTVTVDEIKLYRENEIVFQSNKMVGLALPKRPEFINSTVTIPVLWGEVNNSLALLKSLRLALEMSLAFDLGFPFVLGANLEVEPTWDFFGKVEGIPSSLQPLLGSGQYRRNGHLSKEERRTAVTAEQVLERLRCIGKLAISVASIQKKDDCLYDLARAATRPLSFYYVLLRWLLREQDDPNLEAVWSRIKEPLNTLLRSLMSEEHDRVSSYLKQAAHIAEFAKLRGSSFRRTAQTEPFSEFIKAVRSRKSHMDWDTVFASLVQQYHNRLDRIREHGAGATKYEQIKQFYQVLQQLFEEVYHSRPERLLTDSKTLEAAYLFFLQEARQELKSKTESATTSKTESESTPANN
>NC_019729.1|WP_015178942.1|6566801_6567230_+|DUF86-domain-containing-protein
MSIQKTVVLTRLKFIGEYLLELRRFESMSLENYLASFDSKIISERIMELIVQAAVDINEHILTRGMKVNSDSNRESFVQLGSYGIITPEVSEELVKSAGLRNILAHRYLEIDYVMLFNSVQVALIYYPIYIEQVAEYISQKK
>NC_019729.1|WP_015178941.1|6566349_6566805_+|nucleotidyltransferase-domain-containing-protein
MLQISPTLTELQEIASQLPEQIPYLKMLILFGSRARGDTHAKSDWDFAALYDEKLREESCNNRGFAWFEVPGILGEAFSINSDEIDVVELNRCSPLIANFIARDGKLIYEQESGQFEQFVKTHLMNELELQELERQLYQSIDDFLKDWRSV
>NC_019729.1|WP_083888213.1|6579284_6579440_+|transposase
MVVMDHLTFDKSGRIQELIQTAGCRLLYLPPYSPEFNKIEQRRVLAKKSNS
>NC_019729.1|WP_015178951.1|6579564_6580683_+|alkene-reductase
MTTQTTSPLLLSPFKIGDLPLKNRVLMAPMTRSRAGEARMPNALIAEYYAQRASAGLIITEATVVSSQGNGWLNTPGIYSDEQGEAWKQVVTAVHARETPIFMQLWHCGRASHSSFHENNQLPVAASAIKINGEGIHTPLGKQPYETPRALETDEISLVVEDYRKAAERAKMAGFDGVEIHAANGYLIDTFLQTKTNHRTDSYGGSVENRYRFLKEIVEAIITVFPANRVGVRLSPNGIYNDMGSPEYREDFLYFAEQLNACDLAYLHLVDGLAFGFHELGTPMMISEFRDVFAGAIVGNCGYTQEQAETALSSKVADLIAFGRDFISNPDLVERFTNGWPLNPPAEVGVWYSFGPEGYIDFPTYQEPAAIS
>NC_019729.1|WP_015178952.1|6580874_6581132_-|hypothetical-protein
MVIRIWGNVLDLNWEPLTFAAKLEIGARRQEAGGRRQEAGGRRKEPEEVFLQVGDAGSQRAIKIKYDSNSDSYFEQVTIHLLGAG
>NC_019729.1|WP_015178953.1|6581213_6582221_+|protochlorophyllide-reductase
MAQNHKSTVIITGASSGVGLYGAKALADKGWHVVMACRDVRKAGDAARELGIPEGSFSIMEIDLGDLESVRRFARAFKASGRRLDALVCNAAIYMPLIKEPLRSPEGYELTMTTNHLGHFLLCNLMMENMKPSYYSDPRIVILGTVTHNPDELGGKIPPRPDLGKFEGFEAGFKDPISMVDGKKFEPVKAYKDSKVCNVLTMRELHRRFHESTGITFTSLYPGCVADTPLFRNHYPLFQKLFPLFQKNITGGYVSQELAGERLAMVVADPEYKQSGAYWSWGNRQKKDGKSFVQKVSPQARDDEKGERMWELSAKLVGLTDGAQMGAAAGAGRSA
>NC_019729.1|WP_015178955.1|6582855_6585018_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MAGRSQKLFLLAGIFGLVWLGKPAKTSASTVEILTSNVEDLAAVSSGDDRAFLPDTNLDKRQDLPVKNEETQLPAESERSAAAETPDLPPSAANSVDATSYTILKNRQDACEAGSEFDCGVGILPARKMLIDNGATSQPDRTFSTKTQETELFNRARKLEESIDSKKIDLGGDRASHLAQLPNPILPREPELPAPEPPQPPAPSPLQPTRPTPVESEIRPGIPGTIKVAGFEFEGNTAFSDRELAEVTQQFAGREITFAELIAAEAAVTQKYVAAGYINSGAVIPANQTFPREGGVVKIRIVEGGLDEIVITGNRRLNSNYVRSRLDRATRRPLNRYRLLEALQLLQLDPLIGNISAELQAGSRPENSRLEVRVKEADSFSAEVFADNNRSPSVGSFRRGVRINQANLLGLGDGLEVSYANTDGSNEFNGSYTVPVNARNGTIGFAASAASTNIIEEPFDAAQIEGKSRTYELTYRQPIVEKPDRTLALGLSFSRQESDTFLSGKRFALSAGANERGETRVSAVRFFQEYVQRSSSQVFAARSQFSLGTNLFGATANDSGPDSHFLAWRGQAQYVRLLAPETLLIVRSDIQLADRPLLSLEQIGIGGVQSVRGYRQDLLLTDSGAIASAEVRIPVWRVPEVQGLLQVAPFIDFGVGWNHSEEKPNPDSDKLLGAGLGLVWQMGDRLNVRLDYGIPLINARSGDRTLQEKGLYFRINYFAF
>NC_019729.1|WP_015178956.1|6585161_6585779_+|Uma2-family-endonuclease
MVQIKTKLTFAEFLEKYPEGSGIYELVNGEIVKVEATRAHKNVARFLVKSFDRESDRLGLDYIVDKDIVLRTVTASGQEQGRNPDVGVVKASVWNSNVRGYGALTEPIQLAVEVTSTNWEDDYVDKLDEYQRLGICEYWIVDYLAIASRAYLGNPKIPTVFVYSLENGSYLVQSFRGNERIISKTFPELEITVEQLVLSSQIQNI
>NC_019729.1|WP_051041562.1|6585885_6588834_+|S-layer-family-protein
MPVPQILYFIVRWAFCPPVSYSLLFAFLLLFPSKTFAQIIPDNTLGPESSRTVTDTINNLPSDRITGGAIRGVNLFHSLREFNIREGRGAYFENPSGIANIFTRVTGGNPSNILGTLGVLGNSNLFLINPKGIIFGPNARLDLRGSFIGSTADSVVFNNGVEFSSTNPQTSPLLTVNIPVGLRFRDNPGAIVNQSTALGKVNLPASPVPIPISDRVGLAVEPGQTLALIGGDIQLQGGNLTASGGQILLGSVASPGLVNFALTPAEQQPANLTVNYDNIQNFGNIQISNGSLINTSGIGGGRIELKGGNVALSGARIYALTLGNIDGRGIDITAQKLRVENGTQFSTLTLGDGAGGDINFRAADSVEMSGLGVEGYQQVAIKYLVSGTTDPFDPLMMLFNASAGSGSGGDITIDTGRLLFNNGVVGSGIAFGGGNGGNLIIRANTFEMVGSGINSGTAKESSGAGGSISVDVEKLIMRDGSILGTTSYSSGPSGNINIKAAESVELSNSGPTTVVSTGISTLSIASNGRAGNINVDTKRLTLSGGSAFTLGTGVLVGRFLFSQEGGSAGNLTVRATESVEISGISQLLSSGIQNASALTSGTLSSSRGGDIRIDTPSLTVRDGGIVSTSSLGVGDVGNITVNADRIEVSGSGNNGLFVSTIDASVGKIFGTNPNATANAGSLHLKADRLIVRDGATVTVQATGTGRAGNINIVANSIDLDNKARIDGTTVSGTGANINLQARDIQLRRNSQITTDAGTSDGGNININSNILLALPQENSDITANARTAGGGRVNIDVPNVFGFTAASREQVRNRLGLSDAQFAALQVSPTSLLPSSDIAAISQSGGPALQGAVTFSSVGVNPVQGLVELPQNVVNPAALIVANPCIEGAENEFTVTGRGGVPPSPNEVLSSAEEPFPWVEPAVGGSQQVESQRASIEIRPTEIIPAQGWVMDDRGQVRLVAYNSRGGASLLRPKPTGVCVPR
>NC_019729.1|WP_015178958.1|6589002_6591924_+|S-layer-family-protein
MPRQYSALFFAFLLLCPFGAIAQIVPDNSLGAESSRTVPDTINNLPSDRITGGAIRGANLFHSFQQFNVGEARGAYFANPNGIANIFTRVTGGNPSNILGVLGVQGNANLFLLNPKGIVFGPNARLDLRGSFIGSTGSGILFDNGFEFSAANSNAVPLLAINIPVGLRFRDNPGTIVNSSQTLAPTSALPPLPIEIPAFEKLGLAVDPGQTLALIGGDIQLQGGNLTAYTGQILLGSVKSPGLVQFEPTALGLNLNYRNIQNFGNIEMNGAFINTSGLGGGKVDIRGGNINLNGSGIYGLTLGNIDGRGININSQNLRVEGGSQIFASTLGEGRGSDIKIRATDSVEMIGLGIEGYQQLTENFQTSGTGNPFISQIVLFTSAIGSGAAGDINIEAGRLLMSNGVVGGAPTFGAGNGGNLAIRANTVELVSSTLYNGTTNESTGQGGNITVEAQRLILRDGGAFASFSLSDGASGNIAIKASESVELSGSLPVGLGQTRLGTNTFDGNGKGGDISIDTKRLSVSNGATISLTTGAIFGEVVFSTSGGTGGNLTVRASESIEVSGESRFLGNAGYVASSFVTQTASSGRGGDIRLSTPKLTVQNGGVISAASLGIADAGDITINANSLEVQGIGSNSRLSRSAIEASAGRAFNAVNPTASGNAGSLNLNANQLMLRDSAVVNVQSLGTGRAGNINVVANSIALDNKSIIDGTTVTGSGANINLKAQDIQLRRGSTITTDAGISDGGNIRINSDLLVALPRENSDITANARTAMGGQVTVNVPNIFGFTSINREQARSSLGLSDAEFAALQVNPTSLLPTSDIAAISQQAGPALQGAVTFSSTGVNPAQGLVELEQNVVDPSRLIAANPCIEGAGNEFTVTGKGGVPASPNDALSSAAAPFPWVEEAGRNATSNVGDLTDVTDKAKLEEGEIRDREVVPAQGWVVNAKGEVMLVGYNPGNAADSRNPRRSYGCVPR
>NC_019729.1|WP_015178959.1|6592044_6594660_+|CHAT-domain-containing-protein
MKFSRSLRQVILLFVISCLLSVAIPPGVARVNPPPAVQLVRQARTLYREERFSEAVPLLQQAAAQFEAKGENLDRAAALSNLAATYGQLGLWEEAEKAVNSSLSAVRTQAKTPEQQRILAETLNIQGQLQLERGQTQDAIDIWKQAAKIFEQIDSKNQLFQVQINQSRAWEILGLYPRACKMLLASFKLENQTCEVSAAGLETLKNQPVSLEQVRAIHALGRVLRVLGQLERSQDLLLVGLAAAQKLGSRPEEAAIYLNLGNTVRAKSNKPGLTPEQRGDWERFALEYYARSIEAMPERSLLQIQAKLNQLSLLVDRQDWSEAEGLWRSIEPQTAQFGSNRAGLYAQINLAQSLMKLAQSPAKTLSLSDIDTMLDRSLEPAKSLGDQRIQAYILAAKGKLSEIEKQYQKAENLTIQALSLAPAFQSPDIAYQLFWQLGRIRKAQGNTEGAIVQYTQAVNVLSSLRGDLVTVNPEVQFSFRESAEPVYRELVGLLLQEESPSQAKLKLARQTVESLQLAELDNFFRDACADAKPKSIEEIDPTAAVIYPIILSDRLEVILSIPGKPLRRYTTNKSQAELETAFRQAKNTIRPASFPRNRRQAVEQVYDWLIRPAEADLTASGIKTLVFVLDGYLRNLPMAVLHDGEKFLVEKYSIALAPGLQLLAPKPLNKVKLRVLAAALSEARQGFSALPGVTQEIQQIAAEMPASSLLNQDFVSGRLHDRIKALSYPIVHLATHGQFSSNAADTFIVTWDQKVNVKEFDRLLRVRTGEKQQPIELLVLSACETASGDNRAALGLAGAAIRSGARSTAATLWQVNDESTAIFMTEFYKQLASSKTSKAEALRNAQLTLLQNQQYQNPYFWAPFVLVGNWQ
>NC_019729.1|WP_015178960.1|6594922_6595864_+|carotenoid-biosynthesis-protein
MKQLLIAERFCLIAHVLSMAFGLAGLLLILPRPELVMSLPPAGQTLFQWGMAGGGVVYIIFGAAAVALYSLRTLGLGATLGFLLPSVFLSLSSELLGTSTGFPFGNYHYLSGLGYKIAGLVPFTIPLSWFYLGLVSYIIARAGVAVGKGELNWVRQIGAIALGALLLTAWDFVLDPAMSQTSVPFWEFEELGAFFGMPYRNLAGWMGTGALFMSVAAFLWRKTPIKLERSELGLPLIVYLVNFAFGAIITVTSLDSRFWFPTSLAVLLGVVPAIALSWIAKPATGDVTETMPSLETSAIAAEIPPQPVGVLRK

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Crispr_ID: NC_019729_63

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_63

6943851-6944038

Orphan

Consensus_repeat	Method
TTGCTTTGGCTTGATTGATTTGTTCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_019729_63

>merge|NC_019729|63|6943851-6944038|CRISPRCasFinder
TTGCTTTGGCTTGATTGATTTGTTCTTGGCCAGTTTCTGCTTTTTGTTTGAGTATTGCTTCGGCTTGATTGATTTGTTCTCGTCCTGTTTCTATCTTTTGGTTTAAGGTTGCTCTGGCTTGGTTAATTTCCTGCCTGCCTGTTTCTAACTTGCGTCGGAGATTGGCTCGGGATTGATTGATTTCCTGC

>NC_019729|63|60|6943851-6944038|CRISPRCasFinder
TTGCTTTGGCTTGATTGATTTGTTCT	TGGCCAGTTTCTGCTTTTTGTTTGAGTA
TTGCTTCGGCTTGATTGATTTGTTCT	CGTCCTGTTTCTATCTTTTGGTTTAAGG
TTGCTCTGGCTTGGTTAATTTCCTGC	CTGCCTGTTTCTAACTTGCGTCGGAGAT
TGGCTCGGGATTGATTGATTTCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_150111626.1\|6947755_6948571_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274455.1\|6940346_6940550_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179195.1\|6932430_6933120_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_019729.1\|WP_015179213.1\|6953108_6953519_+\|chaperonin-family-protein-RbcX	unknown	unknown	gnl\|CDD\|367041
NC_019729.1\|WP_015179207.1\|6946202_6946979_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|376814
NC_019729.1\|WP_015179197.1\|6934694_6935216_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622789.1\|6948672_6949107_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179210.1\|6949171_6950929_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019729.1\|WP_015179205.1\|6945077_6945815_-\|phycocyanobilin:ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|179478
NC_019729.1\|WP_015179200.1\|6938193_6939105_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179199.1\|6935572_6937654_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237862
NC_019729.1\|WP_015179206.1\|6945943_6946141_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|184859
NC_019729.1\|WP_015179203.1\|6941933_6943094_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_019729.1\|WP_015179211.1\|6951191_6951380_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179202.1\|6940934_6941795_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015179201.1\|6939131_6939854_-\|DevA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274374
NC_019729.1\|WP_015179212.1\|6951540_6952971_+\|form-I-ribulose-bisphosphate-carboxylase-large-subunit	unknown	unknown	gnl\|CDD\|176981
NC_019729.1\|WP_190274291.1\|6940632_6940785_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111625.1\|6947150_6947567_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179196.1\|6933129_6934473_+\|ATP-dependent-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015179195.1\|6932430_6933120_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	6.05684e-141
NC_019729.1\|WP_015179207.1\|6946202_6946979_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|376814	pfam02548, Pantoate_transf, Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.	9.95485e-162
NC_019729.1\|WP_015179199.1\|6935572_6937654_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237862	PRK14948, PRK14948, DNA polymerase III subunit gamma/tau.	0
NC_019729.1\|WP_015179210.1\|6949171_6950929_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.76519e-51
NC_019729.1\|WP_015179205.1\|6945077_6945815_-\|phycocyanobilin:ferredoxin-oxidoreductase	gnl\|CDD\|179478	PRK02816, PRK02816, phycocyanobilin:ferredoxin oxidoreductase; Validated.	6.71446e-146
NC_019729.1\|WP_015179213.1\|6953108_6953519_+\|chaperonin-family-protein-RbcX	gnl\|CDD\|367041	pfam02341, RcbX, RbcX protein. The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity.	3.4363e-65
NC_019729.1\|WP_015179203.1\|6941933_6943094_-\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	0
NC_019729.1\|WP_015179202.1\|6940934_6941795_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.31578e-07
NC_019729.1\|WP_015179201.1\|6939131_6939854_-\|DevA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	2.95689e-145
NC_019729.1\|WP_015179196.1\|6933129_6934473_+\|ATP-dependent-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_019729.1\|WP_015179206.1\|6945943_6946141_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|184859	PRK14857, tatA, TatA/E family twin arginine-targeting protein translocase.	8.00521e-18
NC_019729.1\|WP_015179212.1\|6951540_6952971_+\|form-I-ribulose-bisphosphate-carboxylase-large-subunit	gnl\|CDD\|176981	CHL00040, rbcL, ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit.	0

>NC_019729.1|WP_015179203.1|6941933_6943094_-|FtsX-like-permease-family-protein
MAKIPLAWAQLTREKMRLAVALAGIGFADLLMFMQFGFRDALFESSITFHAKLKGDIFITSTQSTALIAMKSFPQRRLYQALSFDGVTAISPVYLGFGLWKNPDPNQRNTRQLMVIGFDPAHPIFELPEIQNNLDKIKISDVVLFDQASRPEFGPVAEYFKQGKVVETEVDNRRVTVKGLFTLGASFGADGNLVTSDLNFLRIFASRRTKGLIDIGIIHLQPGTDVQAVVEKMRASLPNDVRISTKAEFVEIERKYWEESTAIGFVFTLGAAMGFIVGIVIVYQILYTDVTDHLPEYATLKAMGYKDFYFLSVVFQEALILAVIGYLPGFGVSLVLYNLGRNATSLPMYMTLGKALTVFVMTLIMCGASGAIAVRKLQAADPADIF
>NC_019729.1|WP_015179202.1|6940934_6941795_-|Uma2-family-endonuclease
MTQSFNPTALPPAFPDHTQLPESDGTFVKNFQEHPQSILLTDSLETTLQNLHPDGQYAIGQDCGIYWRETDPPEKGAEAPDWFYVPNVPPQLDGQYRRSYVLWREYIVPLIAIEFASGDGSEELDSTPLSALPSGGNQKPGKFWVYERIIRIPYYAIYKIQTSELEVYNWVNTRYRRLEPNDRGHYPIDLMGVELGVWSGSYQNQTMQWLRWWDSEGNLLLTGSERARWESLQAEQERQRAEAERERAQQERQRAEAERERADAEREQKERLAAYLRSQGIDPDLI
>NC_019729.1|WP_190274291.1|6940632_6940785_-|hypothetical-protein
MNAVQSIDFLACLKSLSIGRKLKKLTIDGLRVVGFCERYEWRSHFKRDSQ
>NC_019729.1|WP_190274455.1|6940346_6940550_+|hypothetical-protein
MSDFDSYPTIHPTLLPLGRSGNARDRSVPNADTHPTYYFCASAPIWMVLAVYRKECFLSTSFTGLAL
>NC_019729.1|WP_015179201.1|6939131_6939854_-|DevA-family-ABC-transporter-ATP-binding-protein
MNTLPVVSIKNLNHSFGEGQLRKQTLFDINLEIYPGEIVLMTGPSGSGKTTLLTLIGALRSIQEGSLKILDQELRGTPKNKLVKVRRDIGYIFQAHNLLKCLTARQNVQMSLELHSHLSPQETNDKIEGMLQAVGLGERIDYYPDSLSGGQKQRVAIARALVSQPKLVLADEPTAALDSKSGRDVVEIMRGLAKEQHCTILLVTHDNRILDIADRIIHMEDGHLAQDTSTTAATGVLSGK
>NC_019729.1|WP_015179200.1|6938193_6939105_+|hypothetical-protein
MSTQIILVEPRLAVASPKPKKAKPGDPSSDQLLIGGSGLLLLLLIGLAVFTKLKLDDLSKKLKFEEFRNRELQKKYKMALETMLKMEKNPDLIHSRDFNLDYLRMRMAEEVFHFAIVNQIKVKVKEKISIALRPTQGAVGDKNGNAGSGRQVDSMFDIEYETGDPAVKIEKRVLFRIQIKLMKLPTQATSATINQIIDCLETYLSPSDDHDSWQPTIQGRIVHIEWDQKAKPTPMLVLEQSNEGVNVTFRTTRTPAGRPTNATESQLVGAKGQKNGKSSSKTPAKAATKSPAKVGGKRPGSRK
>NC_019729.1|WP_015179199.1|6935572_6937654_-|DNA-polymerase-III-subunit-gamma/tau
MTYEPLHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSLNCISTVAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIERAQFSPVQCRYKVYVIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPLEAMIAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLVGAVPENDLMDLLQAIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKRSDLVALTSATWEKLATFARHWDAELILAGQKHLQTHEVQIKNTTQPRLWLEVTLLGLLPSAIRTQPQATAEPAKNVAQPPQHHPPQSRAGTGAPPLQSGGNQTSNIEQPPAAKPQNPPPTSPPVANRTENTPPAAIPAPVPTAETNQTNYSPTNWADEIDLNRVWEQVLDRVRPHGTQSLLRQHGQLVIFSNNTAHVKISSQPLLNMVKDKVANIEEAFVQIFNRRVTVKVGLTNPAETNSSRAKDLPTSNGRVGENPRNSHPADDAGQQVQNSAGSEIADNFLGNRGEEQKHPPAPENTAVNVPAVSESRSPTNVSTDSQNDFNAQAVAVRDDAQYVANTARKLADMFDGEVVDLSDDLEIWESETFRLESEPDFSELSSDLGEDDFIDW
>NC_019729.1|WP_015179197.1|6934694_6935216_-|hypothetical-protein
MRKILSEYDFPFLLAIDFESEWKRVLTVVKKHPWLTVDGYFQTEQQYRDYKIRMGTAASEFKLWQIENWNDKYYLDQIYRSRYWLSQLDLIKSFNYEDSSYGLKHDCENWWGVEKSKLGIQDTVSYVANGCLIVGALILEWKFTDTYQGHRSLNVCFPISKKSLKRLKPDYRG
>NC_019729.1|WP_015179196.1|6933129_6934473_+|ATP-dependent-protease-ATP-binding-subunit-ClpX
MSKYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVDLCNEILDEELFDSSAVPAAAVAQKQETTQKRRATSGKSMLMSQIPKPREIKNYLDENAIGQNDAKKVLSVAVYNHYKRLSFIQAKNSGKHPPEEVELQKSNILLIGPTGCGKTLLAQTLADMLDVPFAVADATTLTEAGYVGEDVENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNIMFICGGAFVGLEKVIEQRTGKKSMGFIQPGEAQPKEKRAADILKQLEPDDLVKFGMIPEFIGRVPVAAVLEPLDEETLMAILTEPRNALVKQYQKLLKMDNVQLDFKPEAIRAIAQEAYRRKTGARALRGIVEELMLDVMYELPSRKDVARCTITKEMVEKRSTAELLVLPSSLPKPESA
>NC_019729.1|WP_015179195.1|6932430_6933120_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MVVSQSSNYLITSYNDFDVSSSPSNVVPMVLEQSGMGERAFDIYSRLLRERIVFLGTPVTDEVADSIVAQLLYLDAEDPEKDVQMYINSPGGSVTAGMAIYDTMQQIRPDVVTICYGLAASMGAFLLTAGAHGKRMSLPSSRIMIHQPLGGAQGQAVDIEIQAKEILYHKRKLNQLLAHHTGQPIEKLEADTERDFFMSAEEAKNYGLVDRVIAKENLPAAGENVTALN
>NC_019729.1|WP_015179205.1|6945077_6945815_-|phycocyanobilin:ferredoxin-oxidoreductase
MLEISQPSLREQQHYLIRKLADRMEAVWHRYLDLEPYHLPAELGYVEGRLEGEKLIIENRCYQTPQFRKIHLELAKVGPVLDILHCVMFPRPNYALPMFGTDIVAGKGKVSAAIADLSPLNRDRTLSETYRTQLKILPVNQFSCPRQIPEWGDIFSEFCLFVRPESMEEENRFLDIVESYVEIHCQQAVASEPVSAAEESKILDAHIYYCSQQQQNDKTRRVLEKAFGQDWAEHYMTEVLFDFPK
>NC_019729.1|WP_015179206.1|6945943_6946141_+|twin-arginine-translocase-TatA/TatE-family-subunit
MFGLGLPEMGIIAVLAILIFGPKKIPELGNALGKTLRSFKEGVGQSDDRDVDREKDKEEEGQPKV
>NC_019729.1|WP_015179207.1|6946202_6946979_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSVTTHQLIQWKQQQRPIVALTAYDYAIAQLIDLAGVDIILVGDSLAMTVLGYETTLPLTLDEILHHAKAVRRGVKQGLIVVDLPFLTYQESPQQAMHSAGRVLKETGAQAVKLEGGYPAMAATVSQLTSAGIPVMGHVGLTPQSVHQLGYKKQGKTAQAADRIIAESIALQEAGAFAIVLEHIPADLAAQITQKLTIPTIGIGAGPHCDGQVLVTSDLLGLSEKQPPFAKAYANLRETITQAVKDYSLEVRESKFPE
>NC_019729.1|WP_150111625.1|6947150_6947567_-|hypothetical-protein
MCVLAIALVLGGANLDSATARDYESRTQAVDRFTDWFFDRVNPQLGGRKLRSDDSAAYIREWNAIRRTVDREMITTPGDCVGDAFWDFDYRSHGRSLDRIADTIWDIRDPSGDKTRADVSKQEWKKLRNSIIREHFCY
>NC_019729.1|WP_150111626.1|6947755_6948571_-|hypothetical-protein
MKNWICDRILVTTRIIAPLMGLIAIGYTSFAGAAPQQQVPSTNSAHIDTTSKKNYLNNPEKNSTIEALNKKVQVSLENSVNAPKKIPLQQGMPYKEARQILIQQRWQPSLQGQPNLRDRSVKELFDLGYKEIKDCSGTGEGPCRFEFINQQGELLVIVATTRGSENTKRFVRNWWIEKKTDSNQQKSSSNIIQEGRYWLGGTDRGLEVKGKQYRYYDESNIERPWQPLSELQYIKKGVVFDGSNYWCLSTLAPKTGGVSCSKNGWQDKSYN
>NC_019729.1|WP_041622789.1|6948672_6949107_-|hypothetical-protein
MVGALAIALAFISPNLAKAESREQAVDRLTDFLFYRVNPQLNNRKLQAGDREYSNQWRRLREAIDPRVKSVQEVCYGSGPGDTGWEFTTINGETYEQTYDLLADTIFYSRHPQRTGQPIPKSDRIGISEWSAIRREMYISNCGL
>NC_019729.1|WP_015179210.1|6949171_6950929_-|serine/threonine-protein-kinase
MPHPPSKAVHCINPDCPRPYPQTWGNNFCHSCGAPLRLKNRYVPLESLGSGGFAAIFTVWDTETQTERVLKVLLETSAKALKLFEQEAWVLALLRHPGVPRVEPDGYFHVQTQNFAGGDGNPAAKRLPCLVMEKIHGKTLEEVLDEHPQGCPQEWVFSWLSQAVEILEELHRCQIIHRDIKPSNLMLRDPESPQVLLSKGLGGLQLVAIDFGGVKQMGGVESVGKDSRSSTRLISPGYSPPEQIVGGGVVPATDFYALGRTCIHLLTGKYPAEIEDPMTGELRWRHIVSVSPALANLLDDMVRSNVQQRPATAGDVRARLQEIYARSKGKIAIAPMGQAIVEFCRQVVVAGAQKTASLTVLLFGAIAQIVVASLDTGWEMVLGAVGGSAGAIGGLVLGYASPLGPEIANFLNEGLHQLIPNMTFAVGPEVLLFGFAGFGTAIGLTDAGSFRQQKQYWLSGLMGAQGYLLAGLCWMEATASSGVQGVILGAFAIASLTVGMGLRSHQLVHALVVAVFSTGMFLFLNAWNIFPGSFFGIFSLSNVTFGWLQVWGSIVFFGLLGSAIGLCLGVSHYLVVPVLRWLGWR
>NC_019729.1|WP_015179211.1|6951191_6951380_-|hypothetical-protein
MPAAKDAGGKAGDRRVGSNFERPKDMVQRAEQRIYTVYVKNLILKNQNWSGVMGQGEVVTNT
>NC_019729.1|WP_015179212.1|6951540_6952971_+|form-I-ribulose-bisphosphate-carboxylase-large-subunit
MAYAQTQTQSKAGYKAGVQDYKLTYYTPDYTPKDTDVLAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQYICFIAYPLDLFEEGSVTNLLTSLVGNVFGFKALRALRLEDLRIPIAYLKTFQGPPHGITVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYEVLRGGLDFTKDDENINSQPFMRWRDRFLFVQEAIEKAQAETGEVKGHYLNVTAPTCEEMMERAEFAKEIKTPIIMHDYLTGGFTANTSLAKWCRRNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKCLRMSGGDHLHSGTVVGKLEGEKGITMGFVDLMREDHIEQDRARGIYFTQDWASMPGVMPVASGGIHIWHMPALVEIFGDDSCLQFGGGTLGHPWGNAPGATANRVALEACVQARNEGRNLMREGGDIIREACRWSPELAVACELWKEIKFEFEAMDTV
>NC_019729.1|WP_015179213.1|6953108_6953519_+|chaperonin-family-protein-RbcX
MDLKQVAKDTAKVLASYLTYQSVRMVVAQLSETNPPLAIWLNDFSSKGKIQDGEAYIQELLLENQDLGFRIMTVREYLAHDVVEFLPEMVRTNIQQANMEHRRQHLERITQLNWSLPSSNPESSIDSEPNLDNLSS

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Crispr_ID: NC_019729_64

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_64

6967218-6967673

TypeV

Consensus_repeat	Method
GATCGAGCCGCCTGTTGATATTGACCCGATCGTCCCGACACC	CRT

6 spacers

The CRISPR arrays of NC_019729_64

>merge|NC_019729|64|6967218-6967673|CRT
CATCACAAAGCCTGTTGATATTGACCCGATCGTCCCGACACCAACACCAACACCAACACCAACGCCGATCGAGCCGCCTGTTGATATTGACCCGATCGTCCCGACACCGACACCAACACCGGCACCAACACCGATCGAGCCGCCTGTTGATATTGACCCGATCGCCCCGACACCCACGCCGACACCAGCGCCAACACCAACACCGATCGAGCCGCCTGTTGATATTGACCCGATCGTCCCGACACCAGCGCCAACACCAACACCGATCGAGCCGCCTGTTGATATTGACCCGATTGTCCCGACACCCACGCCGACACCAGCGCCGACACCAACACCAGCACCAACACCGATCGAGCCGCCTGTGGATGTCGATCCGATCGTCCCGACACCGACACCAACACCGGCACCAACACCGATCGAGCCGCCTGTGGATGTCGATCCGATCGTCCCGACGCC

>NC_019729|64|10|6967218-6967673|CRT
CATCACAAAGCCTGTTGATATTGACCCGATCGTCCCGACACC	AACACCAACACCAACACCAACGCC
GATCGAGCCGCCTGTTGATATTGACCCGATCGTCCCGACACC	GACACCAACACCGGCACCAACACC
GATCGAGCCGCCTGTTGATATTGACCCGATCGCCCCGACACC	CACGCCGACACCAGCGCCAACACCAACACC
GATCGAGCCGCCTGTTGATATTGACCCGATCGTCCCGACACC	AGCGCCAACACCAACACC
GATCGAGCCGCCTGTTGATATTGACCCGATTGTCCCGACACC	CACGCCGACACCAGCGCCGACACCAACACCAGCACCAACACC
GATCGAGCCGCCTGTGGATGTCGATCCGATCGTCCCGACACC	GACACCAACACCGGCACCAACACC
GATCGAGCCGCCTGTGGATGTCGATCCGATCGTCCCGACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_150111709.1\|6960222_6962277_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_019729.1\|WP_015179225.1\|6963639_6964755_-\|magnesium-chelatase-ATPase-subunit-I	unknown	unknown	gnl\|CDD\|177020
NC_019729.1\|WP_015179224.1\|6963010_6963544_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NC_019729.1\|WP_015179233.1\|6972612_6972831_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_019729.1\|WP_015179219.1\|6957247_6957622_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179235.1\|6974024_6976685_+\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
NC_019729.1\|WP_015179234.1\|6972944_6973328_+\|DUF4339-domain-containing-protein	unknown	unknown	gnl\|CDD\|379517
NC_019729.1\|WP_015179217.1\|6955406_6956630_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_150111627.1\|6971663_6972050_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350305
NC_019729.1\|WP_015179239.1\|6978983_6979766_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|316044
NC_019729.1\|WP_015179221.1\|6958185_6959421_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_019729.1\|WP_015179226.1\|6965159_6965795_+\|PPC-domain-containing-protein	unknown	unknown	gnl\|CDD\|367843
NC_019729.1\|WP_150111628.1\|6972367_6972556_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179238.1\|6978208_6978817_-\|fasciclin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NC_019729.1\|WP_015179218.1\|6956850_6957120_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179236.1\|6976935_6977871_+\|cobalamin-binding-protein	unknown	unknown	gnl\|CDD\|238564
NC_019729.1\|WP_015179223.1\|6962433_6963003_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019729.1\|WP_015179227.1\|6965732_6966401_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179229.1\|6970807_6971569_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|275293
NC_019729.1\|WP_015179231.1\|6972036_6972285_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_150111709.1\|6960222_6962277_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.61055e-49
NC_019729.1\|WP_015179225.1\|6963639_6964755_-\|magnesium-chelatase-ATPase-subunit-I	gnl\|CDD\|177020	CHL00081, chlI, Mg-protoporyphyrin IX chelatase.	0
NC_019729.1\|WP_015179224.1\|6963010_6963544_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.7425e-69
NC_019729.1\|WP_015179235.1\|6974024_6976685_+\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.60136e-29
NC_019729.1\|WP_150111627.1\|6971663_6972050_-\|PIN-domain-containing-protein	gnl\|CDD\|350305	cd18738, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.74475e-30
NC_019729.1\|WP_015179239.1\|6978983_6979766_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|316044	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain. This family is part of the beta-lactamase superfamily and is related to pfam00753.	1.17864e-66
NC_019729.1\|WP_015179229.1\|6970807_6971569_+\|peptidylprolyl-isomerase	gnl\|CDD\|275293	TIGR04500, PpiC_rel_mature, putative peptide maturation system protein. Members of this protein family have a novel N-terminal sequence region. Close homologs to the C-terminal region of this protein score well to PpiC-type peptidyl-prolyl cis-trans isomerase models (see pfam00639), yet no sequence within the family scores well to such models, suggesting origin within a branch of the PpiC family but subsequent neofunctionalization with a rapid change of sequence. The genome context for members always includes an ATP-grasp enzyme associated with peptide modification and a short polypeptide likely to be the modification target.	3.45736e-17
NC_019729.1\|WP_015179226.1\|6965159_6965795_+\|PPC-domain-containing-protein	gnl\|CDD\|367843	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain. This domain is normally found at the C-terminus of secreted bacterial peptidases. They are not present in the active peptidase. It is possible that they fulfill a similar role to the PKD (pfam00801) domain, which also are found in this context. Visual analysis suggests that PKD and PPC are distantly related (personal obs:Bateman A, Yeats C).	9.59323e-05
NC_019729.1\|WP_015179236.1\|6976935_6977871_+\|cobalamin-binding-protein	gnl\|CDD\|238564	cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	2.56102e-75
NC_019729.1\|WP_015179238.1\|6978208_6978817_-\|fasciclin-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	1.74193e-55
NC_019729.1\|WP_015179234.1\|6972944_6973328_+\|DUF4339-domain-containing-protein	gnl\|CDD\|379517	pfam14237, DUF4339, Domain of unknown function (DUF4339). This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. There are two completely conserved residues (G and W) that may be functionally important.	6.03273e-09
NC_019729.1\|WP_015179223.1\|6962433_6963003_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.38885e-47
NC_019729.1\|WP_015179233.1\|6972612_6972831_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.35613e-09
NC_019729.1\|WP_015179221.1\|6958185_6959421_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.33237e-25
NC_019729.1\|WP_015179231.1\|6972036_6972285_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	7.38189e-12

>NC_019729.1|WP_015179227.1|6965732_6966401_-|hypothetical-protein
MATVSPATTPVLTATVLFELFVATVSLSFSAVEIAESVGGLSGGDVVSSLGSFSLADSVVATGFSCSDVRVASESVVTGLSVVFDVVSAADSVVARGFSGSDVRVASESVVTDFSVVVEVISTADSLVARGCFGSDVRVFSESVVTDFSVFVDVVSAANSVVSRGFSGSDVRVFSESVVTGLSVVVDVVSAAYSVVARGFSGSDVRVFSEFGVGSDWFVGSY
>NC_019729.1|WP_015179226.1|6965159_6965795_+|PPC-domain-containing-protein
MTELNIGALTDSTSYTGSIDTTNIFDLYKFNINSPGSFKFAIDGLSGNADVFLLNSSGAPLYSSTNAGTEAETIIVDSLLAGDYSLKVSQISDDIKYTLNLAPTSTQKSSDADTLIGAQSDSPLPSNSAATSEKPTANKDVITGTPVDEKTVTAETTSTTTDKPVTTDSETTLTSEPEKPLATTEYAAEITSITTDKPVTTDSELRKNSHI
>NC_019729.1|WP_015179225.1|6963639_6964755_-|magnesium-chelatase-ATPase-subunit-I
MSPTAEVSNTLNAGALPTVTATAARRAVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALTDLLPEIEVVADDPFNSHPTDPDLMSDEVRDRTLSQTEIKIARKKVQMVDLPLGATEDRVCGTIDIEKALSEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISIRHPAKFILIGSGNPEEGELRPQLLDRFGMHAEIRTVKDPNLRVEIVEQRSSFDQNPVEFLAKYQHEQDEMQQKLVEAQERLKSVTIDRELRVKISQVCAELDVDGLRGDLVTNRAAKAFTALECRTEVTVDDIRRVMTLCLRHRLRKDPLESIDSGYKVTKVFDRVFGLETTEG
>NC_019729.1|WP_015179224.1|6963010_6963544_-|crossover-junction-endodeoxyribonuclease-RuvC
MEKRILGLDPGLAHLGYGAISCQIVPGKQDQNSVSMIDCGVIQTTPKQEMGQRLKTIYDDLHEVIEQIKPDLAIAEKLFFYKMGNTILVAQARGVLTLVLAQCGVPLFEFTPAQIKQALTGRGNADKSEVQEAVARELELGYIPKPDDAADALAVALTGWYDDDICPKKIQLETGKI
>NC_019729.1|WP_015179223.1|6962433_6963003_+|Uma2-family-endonuclease
MTTVTLNLDTVELTDEQFYRLCQMNRDWQFERTAKGEIIIMSPVGGVSGNREADLITDLGLWNRQTQLGRVFSSSTIFRLPNNGDRSPDAAWVSLERWSALTAEEQEKFPPICPDFVIELRSRTDPLRPLQEKMQEYLNSGLRLGWLINPQDEQVEIYRPSREVEIVQFPVSLSGEDVLPGFVLNLPMI
>NC_019729.1|WP_150111709.1|6960222_6962277_+|tetratricopeptide-repeat-protein
MKGDFEDAIASYDKALEFKPNLHEAWYIRGLALGNLGRFEEAIASCDKALEIKPDLHEVWNNRGRALDDLGRLEDAIASYDKALKFKPDKHEAWSSRGLALVKLGRLQDAIASYDKALKFKPDKHEVWNIRGLALDDLGRFEEAIASYDKALKFKPDLHEAWYIRGLALYNLGRREEAIASWDKALEIKPDLHEVWYNRGYALDDLGRFEEALTSYNKALELKPDYHEAWNNRGLLLHNLGRFEEALTSYNKALELKPDYHEAWNNRGNALDKLGRIEEAIASYDKALELKPDYHEAWNNRGNALRNLGRLEEAIASYDKALEIKPDYHEAWNNRVLLLDNLGRIEAIASYDKALEIKPDDHEAWNNRGYALVNLGRIEEAIASWDKALEIKPDYHEAWYNRGVALVNLGRREDAIASWDEALKFKPDLHEAWYNRGVALVNLGRREDAIASWDEALKFKPDLHEAWYNRGLALVNLGRREDAIASYGKALKLKPDFHEAWYNLGVVLHDLGRIEDAIASYDKALEIKPDYHEAWFNQGVVLHNLGRFEEAIASFGKALKFKADYHEAWYSRGLALVNLGRFEEAITSWDEALKFKPDKHEAWYIRGLVLYNLGRFEEAIASYDKALKFKPDKHEAWYIRGLALYNLGRIKEAIASYDKALEIKPDDHLASKNRTIALKKLGIV
>NC_019729.1|WP_015179221.1|6958185_6959421_+|tetratricopeptide-repeat-protein
MLNKIWRFLKQLIQRLLGTTPPEIQPTPPQPRPTLTDAEYEAKLMELLEGVNEGWGRGDVAEFLSAKQIENGDLAAWLRGFGTRLLAGAQGSTEGGHGGTAPTDAVVSLQELARRLELLGRVAGGELGEVAGNVGREILVEFPLVSVKRGEDVDREAEACWNRGYEQLMKGDFEGAIASYDKALEIKPYSYEAWFNRGHALYDLGRLEDAITSYDKALEIKPDLHEAWYIRGLALANLGRLEDAIASYDKALEIKPDYHEAWYNRGVALGNLGRLENEIASYDKALEIKPDYHEAWYNRGVALRDLGRIEDAIASCDKALKFKPDLHEAWYIRGLALGKLGRIEDAVASWDKALKFKPDYHEAWYIRGVALVKLGRIEDAITSFDKALKFKPDDHLASKNRTIALKKLGIV
>NC_019729.1|WP_015179219.1|6957247_6957622_-|hypothetical-protein
MVIITSQQIAQFRSQLAEYPEALKALDAIEDCEGNIEDAAISLAIQAGQEPNISENWLDGLAKRCRVAICKSEVKEELTNGQLNAAFRDLVAAKICPDILVTSVIIYVFKTGVNDFCEPLEYKL
>NC_019729.1|WP_015179218.1|6956850_6957120_+|hypothetical-protein
MNPERQEAYLNLIERVLTCPNGQEPEVLSSCSDLIDAGFVQMLIQISASMAREGDEDTANFLVQLARLLGKSLGLSPDLKPAGYSSAKG
>NC_019729.1|WP_015179217.1|6955406_6956630_-|hypothetical-protein
MKIGIFLGNLGNPAIYYPKLAKITGGVGASIFLCQLLQWQSQQSNSGEWVKTNSSEIETATGLNQQEQELAIRLLKVRSLLKEKLTNPNTDSLELSADIDAFEEKLNNFWTPNPPDIITEIGRESHNHPVEIFRETSPPNHVVKTDKYFGQPRQQIAVAVTPNYRFSGPWNSQEELHNFQRALEAYAQERSLGFGNPSGWAFKIIDSMTKGLTSTFWDEFIAGIPLGESQKVKRDWEIEPEVPYPAFEEERIQYYIHKGEPLEAAVSKARADLRNPVLGKDLWEGFLRKCDRLADDALKAKQQGVDTPYLPSSFNEKPQITKDSVMQKLGAIAPQLALNQSTSETIAEPPNIELKEPPAPAEIPSISSLQKAYQTPLGRSIVEKQIAANPDWGYEIVDGEIVESIPF
>NC_019729.1|WP_015179229.1|6970807_6971569_+|peptidylprolyl-isomerase
MESIAFLKVNNHTISLSQAVGYLKASGKFGMFLAEILRQHILEHELAEVEAIDIDTAELEQTIVNFRLEKQLLDQNSFQNWLVKNGITYDNFRQGITNEIKLDKLKTKISQPKLEAYYQQQKPFFDRVVLSRIIVSDRELADTLKAAISAGKNQFESLAREYSVSDDRVVNGMMGPVSRGTLPDILKNMVDIAKVGEILGPLEIEGGYGLFRVEQFLDASLEDPKVKQELQNQLFEQWLQEKLQSLEIKLEFK
>NC_019729.1|WP_150111627.1|6971663_6972050_-|PIN-domain-containing-protein
MYASSGSRYVLDTNAIVALLQGNIQLIGLLKDADWIGVSVISKIEFLVFPGLTQDDRQLFEQFLQRVEILGLVAMDAVLIEKIIEIRQQHRLKLPDAVIAAMAIQNSASLVTADREFGKVTSLTVINW
>NC_019729.1|WP_015179231.1|6972036_6972285_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MNISLTPELEQFVQSTVKNGRYSSASEVILAALRLLKEREVLVVLNPVSSEEKQKSSYNFSDLVGRLTWQGDAVTMQRNLRE
>NC_019729.1|WP_150111628.1|6972367_6972556_+|hypothetical-protein
MARFCEILACKRRLAIALYPFLSKNCDRPFGISHKVRSPFLAFSQPKAIALLEFVNKGDRSF
>NC_019729.1|WP_015179233.1|6972612_6972831_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MNYRYSLLIQWSQEDGLYLVTLPELATIAMQPCTYGKTYEEAIANAKEAISSYLEYCQEEDLVPPSPAIVAA
>NC_019729.1|WP_015179234.1|6972944_6973328_+|DUF4339-domain-containing-protein
MALVWVAVWHFWGWPREVEIARGKPEAKKKRSPNYNSPPPNPVEQELNQLKATTGMNRMKPVRRSTQPTPEVAQWYVFRSGEAKGPYTKLQLWEVQEITARTKVRRGEAEWQRAGEIPELASYLTQK
>NC_019729.1|WP_015179235.1|6974024_6976685_+|phospholipid-carrier-dependent-glycosyltransferase
MAQQHRDSGSKSLLVLGIIWLLGAISDRLWFALDRSVPAWDQAEYLTSTLNYLQALQHPQWFSGEWWTNFWLLSTKIPPLAYILTVPFLQVFGTGGDRATLVHLLFSAILLASVYSLGVQLFNRQVGLWAAAICVLLPGLYRFRLQFLLDYPLTAAITFAFYCLTMWKASEGRSSATDSVTDVTDVTDRTQLKERTNKKYKFSPSPTLPLSASSFFWAIAFGISLGLSILVKHTTVLFLFTPIVWLAVGAVRQKAWGRLAQLAGSLLLSVAVFGPWAKTNWLLILTGGKRATVDSAIAEGDPALNTIDAWIYYGQHLPEHISWPLLLIPLVGFILYWRRRQDSSSIFYLNSCRWLAVFWGGAYLINSLNINKDDRYVIPYLPVLSIFLAYCLTLWPCRWGRQIRWGTIGLAILAMLFHILPLGGTLGNTLVQIISPGNSSYPYLGKEWPHREVIAEIIDREPYLQSTLGVLPSTPEINQHNLNFYGALANFQVYGRQVGTNLKEVPQDVRSLSWFVTKTGPQGSIREGIKQAQNAAVAAIEKGNQFELDKTWVLPDYTNLNLYRKRVQPVEIQPLNEGRSQVQLDRVTVGEKAVPGVALPVTYTWSGPWQQLQSGLVLVTWQNQQSGDIPPGQTFRILHDRAIAQATLHPGKLEADKFAVGFRVVDRTAMLPPANIAPGTYNLQATYLNRKTGETYPINVPAVSVKIEAEPRNENKAPGNEDNTDKPELDLVTQLRAMATDLPKGLPGLEPVFEQIGRINQYDPIQDYTVQAEQALEYRLKQEPNNLELAYALAFSRVLQQNVESSIAALEKVTQLDSKNPYAYAYLAFVHLYGWHPKAAQTALKPALALNSHLPEIRVLNGAAALMQGNLIQAWQDLQYLKKLKI
>NC_019729.1|WP_015179236.1|6976935_6977871_+|cobalamin-binding-protein
MNQLRIVSLIPSATEIVALLGLTDAIVGRSHECDYPPEIQNLPVCTQPKFNPEGTSSEIHNRVTELLQNALSVYKVEIDTLEKLQPTHIITQAQCEVCACSLTEVEQAVSTLVNSKPEIISLQPNLLAEIWTDIQRVADALGVDAKSAIDLLQSRIDAITSKAQASSIMTTKERLPKVACIEWIEPLMAAGNWIPELVAMAGGNSLFGIVGEHSPWLKWEALVEANPDVIIFMPCGFDLNRTRSEAMQITKYAEWANLQAVKTGKVYITDGNSYFNRPGPRLVDSLEILAEILHPQIFDFGYRGKGWQPFL
>NC_019729.1|WP_015179238.1|6978208_6978817_-|fasciclin-domain-containing-protein
MKNQNLPSWMKQLTGFAGIIGASALIGFPAVAHITSNTDVANANQTQQVPGKVKTAASPASTAATKDIVAIASGDPQFKTLTKALGAAGLVTTLQGKGPFTVFAPTDAAFAALPKGTLDDLLKPANKAKLTKILTYHVVPGSVLSTSLKSGDVKSVEGSSLKVAVSAGKVTVSGANVVKADIKATNGVIHVIDKVLMPPDAK
>NC_019729.1|WP_015179239.1|6978983_6979766_-|MBL-fold-metallo-hydrolase
MKRRQLIRYAQTGLLAAFFTGLPSGWESYQAQTADSLSVQWLGHTCFLFAGGGARVLVNPFRPLGCTAGYRSPKVQTDLILISSRLLDEGAIDGFAGNPGLLYEPGAYKSNGLRIQGIRTQKDREGGRRFGVNVAWLWQQAGVKILHLGGVAGPIGIEEQILIGRPDVVLIPVGGGPKAYTPAEAKQTLQLLKPKMVIPTHFKTQAADAAACDLVPLDEFLALMDGTPVRRLNNDTISIKSADLPQTGSVIEVLSYRFGG

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Crispr_ID: NC_019729_65

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_65

7311290-7311389

Orphan

Consensus_repeat	Method
CCCGCCGGCAACAATTTCTCTTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_65

>merge|NC_019729|65|7311290-7311389|CRISPRCasFinder
CCCGCCGGCAACAATTTCTCTTTCTCCTATGTCCCCATCTGATTGAGCATTCACTAAAACCGGCTCTTGAATTTCCCGACCGGCAACAATTTCTCTTTCT

>NC_019729|65|61|7311290-7311389|CRISPRCasFinder
CCCGCCGGCAACAATTTCTCTTTCT	CCTATGTCCCCATCTGATTGAGCATTCACTAAAACCGGCTCTTGAATTTC
CCGACCGGCAACAATTTCTCTTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015179502.1\|7318163_7319042_+\|choice-of-anchor-L-domain-containing-protein	unknown	unknown	unknown
NC_019729.1\|WP_041622809.1\|7309746_7310166_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_190274449.1\|7304470_7304908_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NC_019729.1\|WP_015179501.1\|7315922_7317650_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NC_019729.1\|WP_015179492.1\|7302859_7303996_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_019729.1\|WP_015179499.1\|7312400_7313177_-\|DUF1350-family-protein	unknown	unknown	gnl\|CDD\|115718
NC_019729.1\|WP_015179495.1\|7308298_7308916_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019729.1\|WP_015179500.1\|7313653_7314694_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_019729.1\|WP_150111633.1\|7313329_7313536_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179506.1\|7322575_7323160_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179488.1\|7300608_7300869_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319253
NC_019729.1\|WP_015179503.1\|7319487_7320705_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_041623653.1\|7302476_7302803_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NC_019729.1\|WP_015179505.1\|7321857_7322583_-\|DUF3120-domain-containing-protein	unknown	unknown	gnl\|CDD\|371465
NC_019729.1\|WP_015179496.1\|7309018_7309558_-\|DUF4347-domain-containing-protein	unknown	unknown	gnl\|CDD\|372982
NC_019729.1\|WP_015179508.1\|7323871_7325140_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|223353
NC_019729.1\|WP_015179504.1\|7320813_7321662_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_019729.1\|WP_015179489.1\|7300939_7301488_+\|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl\|CDD\|236521
NC_019729.1\|WP_150111714.1\|7305247_7307389_-\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179490.1\|7301532_7302237_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_190274449.1\|7304470_7304908_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	4.14588e-31
NC_019729.1\|WP_015179501.1\|7315922_7317650_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NC_019729.1\|WP_015179492.1\|7302859_7303996_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	7.53039e-63
NC_019729.1\|WP_015179499.1\|7312400_7313177_-\|DUF1350-family-protein	gnl\|CDD\|115718	pfam07082, DUF1350, Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.	8.94057e-148
NC_019729.1\|WP_015179495.1\|7308298_7308916_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	4.72364e-22
NC_019729.1\|WP_015179500.1\|7313653_7314694_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	6.77711e-41
NC_019729.1\|WP_015179508.1\|7323871_7325140_+\|ferrochelatase	gnl\|CDD\|223353	COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism].	5.52262e-81
NC_019729.1\|WP_015179488.1\|7300608_7300869_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319253	cd16395, Srx, Sulfiredoxin reactivates peroxiredoxins after oxidative inactivation. Sulfiredoxin reduces and thereby re-activates 2-cys peroxiredoxins. Peroxiredoxins act as molecular switches, inactivating in response to hyperoxidation from hydrogen peroxide and other free radicals. Sulfiredoxin reactivates Prx-SO(2)(-) via ATP-Mg(2+)-dependent reduction. Arabidopsis sulfiredoxin has been described as a dual function enzyme, having nuclease activity in addition to the sulfiredoxin activity. This protein is similar to ParB N-terminal-like domain of bacterial and plasmid parABS partitioning systems.	6.21407e-42
NC_019729.1\|WP_015179503.1\|7319487_7320705_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.78232e-26
NC_019729.1\|WP_041623653.1\|7302476_7302803_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.81264e-27
NC_019729.1\|WP_015179505.1\|7321857_7322583_-\|DUF3120-domain-containing-protein	gnl\|CDD\|371465	pfam11318, DUF3120, Protein of unknown function (DUF3120). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.42327e-108
NC_019729.1\|WP_015179496.1\|7309018_7309558_-\|DUF4347-domain-containing-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	2.64374e-60
NC_019729.1\|WP_015179504.1\|7320813_7321662_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.12211e-36
NC_019729.1\|WP_015179489.1\|7300939_7301488_+\|DNA-starvation/stationary-phase-protection-protein-Dps	gnl\|CDD\|236521	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional.	1.44541e-81
NC_019729.1\|WP_015179490.1\|7301532_7302237_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	7.16179e-06

>NC_019729.1|WP_041622809.1|7309746_7310166_-|hypothetical-protein
MIRRIAFVSGLVILNAFGFATVARAGEGGVAGSAAFTVTNNAVTGVAVSAAVGKENASAAAFNYGNNFFGNSNLQNSAWALGSAGTQNFQAVGDPNGFNVTPNADGNRGLAQTNTFSAGTVTVQLGTATGNAVVKSPTP
>NC_019729.1|WP_015179496.1|7309018_7309558_-|DUF4347-domain-containing-protein
MLNTSKTINPATRIVFIDAGVENADLLIEGVISTTEVFVLDGTADGMEQISLVLQHRQNIDAVHIISHGSPGCLYLGNSQLSLDTLNGYATQLQQWNVANLVFYGCKVAAGDAGQEFIARLHKLTGAQIAASALPIGSAAGLGDRLLLNSAVVRTNGISFRNNSAIGGHGGNFCDFFAR
>NC_019729.1|WP_015179495.1|7308298_7308916_-|calcium-binding-protein
MEGNSGSLDPIIKHPFYNPISGTPNNDILRGTATDDQIDGFAGSDALYGNAGNDAIDGGDGNDIVYGGNDNDVLLGGNGSDRLYGDAGNDELLGGDGDDILYGGDGNDILNGGAGSDRLYGNAGFDTFVLASGMGLDSIYNFQDGVDRIRLDGGLTFGALQIAQSGTSTLIKIASTGETLASLINTNSALIGAADFSSASAIDVT
>NC_019729.1|WP_150111714.1|7305247_7307389_-|hypothetical-protein
MIPPRIAPSVSDLPQATPLSETPNWSTSATNLEPSSPNLASEPEPTKPSSTNNPNGLPQPSAPSTDPDYIIPPRIAPDEKISPFTTTLPLNDIPISHLTEWEFSGFHTFADTTDSDIFFNGTLKLNSRVSESLSRNNIYRVDQKGTYFQLRTVPLERTITTTTTAPQTMTGLEIQMSLTGACIFPNTPSDQQCTYTPGLVIDRNSIDPEFFVPTRVFQTSQVGEVVKPETLAFMQLPGFQGGTSSQPIGVDFYFPNSGAYPGNSQSQKTKVERKEEVDYTIAGTVSRVRQVVKANDREAVLGRTIRGFTLFVDDENRWLNTAIQAGAQILPDVIPNLQGSKNPVNTNINRNLFLAANNTRLPSSSFTIYSAGVGRAESLTPNVTSLNQVPRANYNSLWLGLSPVIDRNIEDGRIFYDPTGPQVTLVDAGAEGGANTNVQLFSAVNQNQYSTANLQNFYAQVYLGFLQQDVNFVRESIYREKSRYYPHLSFTGNWTGGEDILRYYTGVIASEKPKLYLGADYTRNTLNNWSFRGGAIGYLNPDRDYYSQLWGSVAKTFRFSRRANLTLSTGFNYALDRETRIGDVVSISPASEVALSARLNWGIFSLGLTNYFGDILPNSYDDRLLAELTIRPLSTLTLSGYIAPIDKNSTRSLYGASVSWQLENNYNSPTLSLNWQNKQYDYGDDVFGNRLLLNDNVFTILFRIGSPANPLSR
>NC_019729.1|WP_190274449.1|7304470_7304908_+|ATP-binding-protein
MLKKADLQVNTGLNGLSWVLSWFAQLYDSRIPTSVWIRCQLALAEGFTNAVRHAHKGKPADLPVDIQVAVLAESLEIKIWDWGDPFDLEKKIQDISEKVDIHSPGGRGLKLIKDIADSISYERTADGRNCLSMVKNYSPCIDDRK
>NC_019729.1|WP_015179492.1|7302859_7303996_-|SpoIIE-family-protein-phosphatase
MFQILVIDDDTAVQELLRRTLKKQGYEVTVASNGEDGVAQAQKLRPALIICDWIMPRLTGIDVCRRVKADPDLSTTQFFLLTSLGSIADRVKGLDAGADDFISKPIELNELQARVRAGLRLHQLSRDLKIAKQSLEAELAEAAEYVQSLLPDPMTEPISIEAKFIPSRQLGGDCFDYNWLDADYLAIYLLDVAGHGLRAALPSVAVLNLLRSRALPNIDYYKPSDVLRALNTTFQMSYQNDKYFTIWYGVYNRISRQLVYASAGHPPAVLISQSPASTAKIQRLKTPGMPVGMFPDAPYVDNCCDVEDLSTLYIFSDGVYEIHQPDGNIWGLDPFIDLLAAYNGASADQLELVLNYIQKLNAKAVFDDDWSLLKVNFG
>NC_019729.1|WP_041623653.1|7302476_7302803_+|STAS-domain-containing-protein
MSPVVKIIQPSGILDGTKASQFRQEISDLVEAGADVVLIDFTDVTFMDSSGLGALVLALKTVRAAGSQLVVCSINEQIRILFELTSMDRVFEIFQTRDAFNSKILSTN
>NC_019729.1|WP_015179490.1|7301532_7302237_+|helix-turn-helix-domain-containing-protein
MYFLKARDSLRSRICPFINLDEFFVTANTPDYAPQLQRLMQQAGLSSDRELSNKAGVSEIQLSRLRRGLALQTRADILLKISQALQISLPELLATLAPNYVELEKTPPTALEQEYQRLQASIEQQRESLMQEFQLSSVQILESWMLQWPTAASKAQENHNLRAQKLLPLLRPVEQLLEHWGVESIAPVGAQIPYNPQQHQLMEGTADPGEPVKVRYTGYRQGDKLLYRAKVSPV
>NC_019729.1|WP_015179489.1|7300939_7301488_+|DNA-starvation/stationary-phase-protection-protein-Dps
MTANNHKQHLYPTRIDMSAATRSQVVGLLNATLATTLDLKTQVKQAHWNVKGMDFYQLHLLFDEMATELEEYVDTVAERVTALGGLAVGTARTAAADSILPEFPFDILDGKEYVTALADRYAPYAQHLRVAINKTGELGDADTADLYTEISRTIDKRLWFLEAHLQASATTATAAAEKVAVK
>NC_019729.1|WP_015179488.1|7300608_7300869_+|ParB-N-terminal-domain-containing-protein
MRIEEIPLNQIRRPLPRVNDQTKVAALMESIREVGLNEPIDVLEVDGRYYGFSGCHRYEACQRLGLETIRCKVRRATRAVLQMHLA
>NC_019729.1|WP_015179499.1|7312400_7313177_-|DUF1350-family-protein
MDWQEISGNWVFIPSKPIAIVHFLGGAFVATAPQLTYRWLLEALGNQGYVVVATPFVNTLDHIAIARDVLNKFENALDRLRATKLLKSSYLPIYGMGHSMGCKLHLLIGSVFDVERAGNILISFNNYAASEAIPIVEQISPVFNVEFTPSPQETNRLVQNSYQIRRNLLVKFNGDNIDQTLLLTKLLKARFPDMITVQTLTGNHQTPLGQDVSWPVGQIFTPFDAIGQWVKQEVYRELNQLKRTILLWLNPLSKDFKS
>NC_019729.1|WP_150111633.1|7313329_7313536_-|hypothetical-protein
MTVHILSGQSPAKPATAACSRAVGQYIQIFETCDRMSALIYSAASFNPIQGENSSDRQPCYLPSQQLE
>NC_019729.1|WP_015179500.1|7313653_7314694_-|glycosyltransferase-family-2-protein
MQVMNSQKVSVIIPAFNAADTLAETVASVLNGTHKNLEILIVDDCSTDATEKVAAKLVEQDSRIQYFRNPQNYGVSKSRNLMIYRATGEYVAFIDSDDTWEPNKLEVCLKMLADNPEVKAVAHALRYLDKHGKKLSYIPTYPTTKAEMQAIKETGESPWVFPSSVVVDRSILVEEGGFAEDWQVGEDTELFTKLAQKYGLLAATEPLGNYRIRGNSLTDKHWLKKRIASDCVKENQLRRLRGEKELSLQEYEELCFKNLPLLQRLNKFREVLAMHYMRKLGQSWLNREVLPTIVYGVATTLLNPQATVHKWKWMKTHEKLSHQTAEGISHSPQLNRERSSEIGGLP
>NC_019729.1|WP_015179501.1|7315922_7317650_+|gamma-glutamyltransferase
MLPKFSSKVQISTCCLTVLVLGGCQQQLQPNLQQQRSKQGMAVSAHPLASAAGLALLQQGGNAVDAAAATALAISVVEPFSAGIGGGGFLLLRRAETGTVQALDFRERAPKRAARDMYLDKQGKVRPRASLDGHLAAGIPGTVAGLYTVHREYGKLPWAAVVAPAIALAEKGFPVSSRFTTATGRRQDVFKKNRAAREVFTRGGILYQPGELLVQRDLARTLRQIAQNPQSFYTGEIARAIAADMAKNGGIITLEDLKNYTPIWRNPVCGNFRTYEICAMSPPSSGGVHLLQILNILGDTDLKRLGRQSPDTLHLLAESMRIAYADRAEYLGDPDFVSVPVKALTSSNYVKLRRSQIQMSKARPSSEVKAVDAETLSRLLWESPETTHLTVVDKERNVVSLTFTVNGGFGAGVVAAGTGILLNNEMDDFAAAPGVPNLFGLVGSEANSIAPGKTPLSSMTPVIVTENGKFRLAAGAPGGSTIITTVLQIVLNVLVYDMNVGDAVSAPRVHHQWQPDRLMVERGGFEAATLSELRRRGHLIVEGDGWGNANAIVLTADGWLEAAADRRGEGEARGF
>NC_019729.1|WP_015179502.1|7318163_7319042_+|choice-of-anchor-L-domain-containing-protein
MIITHKNAALTATLTTALSLLAAPAMAFSVGATNNIETLKNNLLGAKTAGLSNFSVSITGNSAAFGTFTNDPFGLSSGVVLSTGKVADIPGKNRKDNFTTKDSDLNTDFGAKGEQGDLTQLNLSFFADSTVQKLFFEYVFASEEFPEFGGSQYNDDFELLLNGTNLAKLSDGKTVTINNLVPDPYNRSKDHPDYIDNPSLTGIAANIVKLDGFTKVLGFEGLLKQNQTNVLSIRIKDVGDGNLDSAVFIKGGSVGTVQPEPVPEPMTVGGLMAGGAMLAAGRKLRTRHSGSN
>NC_019729.1|WP_015179503.1|7319487_7320705_-|pentapeptide-repeat-containing-protein
MNDLDQYYKVLGLLPGASREEITQAYKDLAFIWHPDRIPKDNPRLLQKAEEKIKEINQAREQLRSIQPRGQNQNVQHKHTQHKHTQHQNTQQQNAQYRNTQQQNTQYRNTQQQNTQYRNTQQQNTQQQNTQYRNTQQQNTQQQNAQYRNTQQQNTQQQNSQQQNSQQPHTQYRNTQQPHTQQPHTQQPHTQYQNTQYQNTQQPYTQYQNNQYRNSQYPNTQHQNSQPPPANPKEPRYSSEPSSGKYAGNYAGNYGGNPAGPYSDASRYQSQPPPSQSYRQAGPQAPDLSGSNFKGASLKEKDFSGRNLSNANLSEADLSDAFLHNVNLTGANLYQANLFRANLLGACLINANLRESNLIGADLSGADLSGADLTGAKIGYGDRVMVKLTRTTLTGTILPDGTVHS
>NC_019729.1|WP_015179504.1|7320813_7321662_-|alpha/beta-hydrolase
MSFISIRGVEHYYEWITADNSAGHSGKPVMVFLHGWAGSARYWESTARAIADDFDCLLYDMRGFGRSPLPKEPPESSYELETYARDLAELLESLNLSRVFLNAHSTGASIATLFLNLYPEKVEKAILTCSGIFEYDEKAFTTFHKFGGYVVKFRPSWLASIPFADRLFMARFLRRSLPREVSLGFLKDFLMADEQAAIGTMVTAVSKRAAEEMPQEFARLSVPTLLVAGEFDQIIPAIMGEQAASLSKKVEFVIIPNTAHFPMLEDAATYLQRIREFLPAAA
>NC_019729.1|WP_015179505.1|7321857_7322583_-|DUF3120-domain-containing-protein
MFNLNLVSSAIAPIATIARLDNPVTSGTTNSIKQWLIFSASAFLVSIPVFVQAPLVRLYPTISLLSTIPWFVLSLILIFRPKTQLWGDLLLGFAGCWLAGSIYWGWFRWEPILHLPIEAIGLPFAIWCLGKSWGKVGSYFYLGSLLGTAITDLYFYLTGLMPYWRQVMHAEPELAMPIFQSAIGQIETPWGIGCALVLIAVLLTVGLLSLRDRELHWRAFSGAVLSTLLVDGLFWLAASAA
>NC_019729.1|WP_015179506.1|7322575_7323160_-|hypothetical-protein
MRLVICPGVHEPKLTDCFLAGLSAVWGLAADRPNQQIVDRVKIFPAHKYPPFSALDIWHFLCSEELAGESLVFVSFSAGVAGAIGAAWMWQQLGGKVGAFFALDGWGVPLGGNFPIHRISHDRFTHWSSAILGGGGESFYADPAIEHLDLWRDPQTAKGWHVSQTVAGVETVAPATAAKFLVHLLKQYGVQSVV
>NC_019729.1|WP_015179508.1|7323871_7325140_+|ferrochelatase
MVASPEKIDFKTSAAPASNDRVAVLLMGYGEVESYDDFANYNEQALNLLTAKFAPVPLWIYPPLAKILAIFDLHEWSHQHGQFVSPHNAIFEQQRAGIEKNLQEKWGDKVKVFKAFNFCAPFLPEQVIPQIKAEGFDKILIYPLLVVDSVFTSGIAVEQVNKALAQTFDGKEHWVKGQRYIPSFYDEPAYIQLMADLVEEEIKNDLAVAHLPSQIGIVLMNHGCPHKAKGFTSGIVESQALYDRVRERLMYRYPLISVGWLNHDTPLIEWTQPDATLAAKNLIDLGATAIVFMPIGFATENHETLLDVDHVIESLQKQRKGVTYRKLPCVNDHPEFLKMAAEWANPQIEALLSETAVAVNPSLASAHREHSHSHGEHGHSHGEHGHSHGGHGHSHGHGHSHGGHGHSHEGHGHSHGGHGHSH

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Crispr_ID: NC_019729_66

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_66

7410696-7410797

Orphan

Consensus_repeat	Method
AGAACGGGCAAGATGCCCGTTCCACAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019729_66

>merge|NC_019729|66|7410696-7410797|CRISPRCasFinder
AGAACGGGCAAGATGCCCGTTCCACAAGAAAATTTACTCTTCGCTTCACAGGCATCTTGCCTGTTGCCTTCCAGAACGGGCAAGATGCCCGTTCCACAAGAA

>NC_019729|66|62|7410696-7410797|CRISPRCasFinder
AGAACGGGCAAGATGCCCGTTCCACAAGAA	AATTTACTCTTCGCTTCACAGGCATCTTGCCTGTTGCCTTCC
AGAACGGGCAAGATGCCCGTTCCACAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015179579.1\|7415508_7416309_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
NC_019729.1\|WP_015179565.1\|7398800_7401161_+\|after-VIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|274782
NC_019729.1\|WP_015179566.1\|7401491_7402904_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237218
NC_019729.1\|WP_015179575.1\|7411336_7412320_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369942
NC_019729.1\|WP_015179568.1\|7404470_7405172_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
NC_019729.1\|WP_015179572.1\|7408154_7409693_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NC_019729.1\|WP_015179580.1\|7416617_7418435_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224043
NC_019729.1\|WP_015179576.1\|7412493_7413408_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|178419
NC_019729.1\|WP_015179570.1\|7405896_7407312_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_019729.1\|WP_041622818.1\|7409689_7410373_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019729.1\|WP_015179581.1\|7418525_7418924_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NC_019729.1\|WP_015179582.1\|7419205_7419928_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NC_019729.1\|WP_015179569.1\|7405417_7405792_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179571.1\|7407533_7407962_+\|DUF202-domain-containing-protein	unknown	unknown	gnl\|CDD\|225060
NC_019729.1\|WP_150111716.1\|7402910_7404071_+\|ribonuclease-inhibitor	unknown	unknown	gnl\|CDD\|238064
NC_019729.1\|WP_083888221.1\|7420649_7420787_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|223717
NC_019729.1\|WP_015179578.1\|7414720_7415278_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NC_019729.1\|WP_015179577.1\|7413657_7414587_+\|agmatinase	unknown	unknown	gnl\|CDD\|212539
NC_019729.1\|WP_015179563.1\|7392743_7393526_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NC_019729.1\|WP_015179583.1\|7419914_7420463_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015179579.1\|7415508_7416309_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.7615e-104
NC_019729.1\|WP_015179565.1\|7398800_7401161_+\|after-VIT-domain-containing-protein	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	9.6578e-138
NC_019729.1\|WP_015179566.1\|7401491_7402904_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|237218	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	1.79989e-13
NC_019729.1\|WP_015179575.1\|7411336_7412320_+\|hypothetical-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	6.29728e-08
NC_019729.1\|WP_015179568.1\|7404470_7405172_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	8.18372e-142
NC_019729.1\|WP_015179572.1\|7408154_7409693_-\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	6.62509e-54
NC_019729.1\|WP_015179576.1\|7412493_7413408_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|178419	PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.	6.34486e-131
NC_019729.1\|WP_015179570.1\|7405896_7407312_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.84584e-58
NC_019729.1\|WP_041622818.1\|7409689_7410373_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.84744e-82
NC_019729.1\|WP_015179581.1\|7418525_7418924_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	5.33776e-89
NC_019729.1\|WP_015179582.1\|7419205_7419928_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	3.12535e-148
NC_019729.1\|WP_015179580.1\|7416617_7418435_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	1.90781e-121
NC_019729.1\|WP_015179571.1\|7407533_7407962_+\|DUF202-domain-containing-protein	gnl\|CDD\|225060	COG2149, COG2149, Predicted membrane protein [Function unknown].	2.37577e-31
NC_019729.1\|WP_150111716.1\|7402910_7404071_+\|ribonuclease-inhibitor	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	5.02114e-25
NC_019729.1\|WP_083888221.1\|7420649_7420787_+\|NAD(P)-binding-protein	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	4.62494e-10
NC_019729.1\|WP_015179578.1\|7414720_7415278_+\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	2.88691e-71
NC_019729.1\|WP_015179577.1\|7413657_7414587_+\|agmatinase	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	7.26352e-111
NC_019729.1\|WP_015179563.1\|7392743_7393526_+\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	4.8871e-31
NC_019729.1\|WP_015179583.1\|7419914_7420463_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	6.19385e-103

>NC_019729.1|WP_041622818.1|7409689_7410373_-|response-regulator-transcription-factor
MNVLYVEDEEKIANFVCMGLKEQGFVVDYCDNGNDGYGRAMDNEYDAIVLDIVLPGKDGLSILKHLRKAGRNVPVILLTARNELDDRIEGLHLGADDYLAKPFFVEELVARIYAVVRRASGGGQNILSVGPVKLDRILREVTCDRHAVELTTREFNLLEYLMRSPGRVLTRTQILEHIWGYDFNPNTNVVDVCIQRIRKKIEPIGGTGWVESVRGVGYRFRKPDSPS
>NC_019729.1|WP_015179572.1|7408154_7409693_-|HAMP-domain-containing-protein
MKLQSFRFRIALSSAVLASIALIGFSIVSWWLIYDAKVKRLDAEIKNQLIQSTRPQSTQWDVYNDSLPSVLGMNDGETTVALRVNDRDGNLLYRSSQWEDGIDANSLWRSLPQPPPDRRRIPFELEPPPPPPPPYPPPPDRPDSFSPRERRPPRDRPPQFDRPNFPQVFKAKLATQRTSRAVWRVGAIHSPQTQIAIAVNLQAIDREMASIRNIFLFSIPVVLLLVAGGAWVISRSILYPIGRLTMAIRNVTVQGLDRRVPVGSTDIEFVELIFVFNQMLERLERSFKQASRFSGDAAHELKTPLAILQGELERALHQVESGSEVQQTLSKLLDEVCRLSEITRKLLLLSLADAGRMGLNLVEVNMSALLSEIAEDMELLAPHLDVQMAIAPNLSIKGDRDLLVQVLQNMVGNAIKYNLPKGWLRLQANCQGKRVIVKIVNSSHDISLRERDRIFERFHRGDSTQIQKIEGSGLGLSLAREIARAHGGDIKLDAAILGQTGFILSLPVGDRD
>NC_019729.1|WP_015179571.1|7407533_7407962_+|DUF202-domain-containing-protein
MNKGAKIDRQREHQANERTFLAWLRTSLALIGFGFAIARFSLFLRQFQATVTQQEVSSPPFFNSETLGLSLVVFGIAVIALAAWRYNRVFWQIERGDYRPNRVLVWILTGVVMILGTLSIPLLLWRDRGNIAPTATPKKSQF
>NC_019729.1|WP_015179570.1|7405896_7407312_+|LCP-family-protein
MPAQKIPNQDPIQQSTAQPATKKASQPHRGRWLGFGFGLAGVAMLSATAGALLAVSLSTTPLQQQKLSPEEAAVFSQGDMAKLSMKMPELTRPVNILVLGLKVLSSDLDGHPDKELGYDVWQNSFKGLTDTMLLVRFDPQNKKLTVLSIPRDTRTYVEGRGVVKINEANYYGGPASSAKSVSGLLGGVGIDRYVTVNIQGIKSLVDALGGITINVPKDMKYTDESQHLYIDLKAGKQKLNGEQIVQYLLYRHDDLGDIGRVQRQQLLMRAFVEQEVNVGLLSRLPKILSVIQSHLDTNLSIEELVALAGFATQTDRAGVQMLMVPGKFSDAKDYKASFWLPDQYAIETMVAEHFDFGQNTWKIENADSTFLNVAIQDSTGDPSAVEAFVNNLTQAGYRNVQVYKAWPEPLEVTTLVAQQGDIKGAQAIRQFLGFGDVLVESTGSLQSDVTIRLGKDWLEKKAQSGGAAKSF
>NC_019729.1|WP_015179569.1|7405417_7405792_+|hypothetical-protein
MKKTDPLENPELDRASLFVLMIPVIGFFPALWTLYRRQGSPERKAVSRLAIALAFSWLLGHILLEAGAISAESPTLPMLLMSSLLTTSYFIVALGLMVRLWKRQPLWLPGISRVAEQVVGKHLS
>NC_019729.1|WP_015179568.1|7404470_7405172_-|ribulose-phosphate-3-epimerase
MTQSQKSIVIAPSILSADFSRLGEEIQAVDRAGADWIHVDVMDGRFVPNITIGPLIVEAIRPVTTKVIDVHLMIVEPEKYVEDFAKAGADIISVHAEHNASPHLHRTLGQIRELGKMAGVVLNPSTPLELIEYVLELCDLVLIMSVNPGFGGQSFIPAVLPKIRQLRKMCDDKGLDPWIEVDGGLKGNNTWQVLEAGANAIVAGSAVFKANDYAAAIEGIRHSKRPTPELAAV
>NC_019729.1|WP_150111716.1|7402910_7404071_+|ribonuclease-inhibitor
MINTALHCPLPNPIESSSEVVIELKSLIDYLQTDRPIAQKIVFPRGTVMPDGRLDLCKQDLGVMGCHLVTQALANNDAIASLLLGTNGIGDRGAQDVARLIQRNNRLEIVYLGCNAISSTGIAALAAALTQNQSITGLWLKRNPIGPEGADRLAEMLRHNTSIRTLDLVNTQIGDEGLAAILEVLTYTNRTVERLYLGGNQIQENHAALLANLLADNPVITGLFLNVNHLGDRGVTVLVDGLAENKTLVDLGLASNGIGVAGCNPLLAAVATHPKLSNLDLGYSPSTGVLGAQPNQIGDIGASAIAHSIARNQTLLKLNLCRNGIGNLGKKALIAALEINQKLRYLILDGQPDRRIEVLLDRNRMLNLGEELHQPRSVSLIQSVYR
>NC_019729.1|WP_015179566.1|7401491_7402904_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNLPPDQLEICLNVLQKISEDPAVIGDHDRFKSLIAKIYKQGRKGLRQSQQQQRRIEDRQLKASTVMVQHQHQQQPCAALPESTTRSSQHLHKPILCYICKTPYTEIHFFYHSLCPKCAQFNYQKRQQRTHLVGRTALVTGGRIKIGYQMGLRLLQDGARVILTTRFPYDCANRYSLEPDFEQWRDRLQIHGLDLRNIPALETFVRDLFHTESALDLIINNAAQTIKRPLAFYQHLLEREEEASQILSNNAQALIPLDSNLLKEQLPRHQSILLESQPNYKARLPSAIADYFPRDCFDADRQQLDLRPENSWLLKLDEVNTIELLEVQVVNAIAPFILNSQLKPLLLRSSFERRFIINVSAMEGQFNRSSKTPYHPHTNMAKAALNMMTRTSAVDYARSNIFMNSVDTGWITNENPDPKKIRVQGEQGFYTPLDAIDGMARIYDPIVQGIENPAPPIYGHFLKDYAPYPW
>NC_019729.1|WP_015179565.1|7398800_7401161_+|after-VIT-domain-containing-protein
MPSLKSPTDRTSGLYVRSPEGEQLIFPLKHTEVRAKIAGNLSRVEVSQQFENPFTKPLEAVYIFPLPEEAAVDEMEIKIGDRTIKGSIKKREEAQKIYEKAKQEGRTAGLLEQERDNIFTQSLANIKPGESIDVTIRYTDSLKFLAGDYEFIFPMVVGPRYIPGTPLDETAASGSAPAPMTVNSSTDIVPDASRLNAPILPPGMRSGHDIGVTLEIEAGVPIRNVNSPSHQLQIEYFDSPQTSLASEHKNGLRVRVQLGNQDTIPNKDLIVRYQIAGRETQSTVLTQADDRGGHFAVYLIPAIEYKTDEIVPKDVVFLVDTSGSQSGAPLQQCQALLRQFINGLNPADTFSILDFSDKVRRLSQQPLPNTAENRQQAIEYINKLRASGGTEMLGGIRAAIDFPAPSGRLRTVVFLSDGYIGNENQVLAEVQQHLKSGNRLYSFGAGSSVNRFLLDRIAEIGRGISRIIRHDEPVNEFVEKFFRQINNPVLVNLEITWQGEGENPVIYPSVAPDLFAEQPLVLFGKKGDRQAGTLHIKGVSAGGHQYVQTYQLDFTDPGNPAVAQLWGRHRIKDLMNQMVQYDTKVGVETVTETALTYQLLSQYTAFVAVSDDVRVEPTESISMNVPVEMPEAVEYEGVFGGTGYVEDNGCTDWMEPEGELERGISFKRLEKRMYPLRAPARASAPAPSKARRTSPVEVVSAAGLDEVTIDSLNQHLATLTVPPGTNGELVLEIVFSKVRPSRIVVDAEASTLADVELLKTIKKWLFSWRIPHFIGDTVRLTLRVRS
>NC_019729.1|WP_015179563.1|7392743_7393526_+|DsbA-family-protein
MNVSTIWRKLRSQQAFCLAALLAGCLVFIGCSPAQSGAGNSVDPKLKEQVLQIIRENPQAILESVQAYQQQQQQSLKAAQESFLQQMKSNPKSAIGDSPTTGSASQQIVLLEFSDFQCPFCARAYDTVKQFMAKHQDKVTLAYKHFPLTSIHPQALPAAKAAWAAGQQGKFWEYYSALFEGQKELGEPLYGSIAQKLNLKLDKFNTDRNSPAAEAAIAKDVQLAQKLGIEGTPFFIMNGKTFSGAIELSEMESILASISK
>NC_019729.1|WP_015179575.1|7411336_7412320_+|hypothetical-protein
MPALFPNSINAPGNPPQNQGAPGNPPPQNQGAPGNPPPQNQGAPGNPPPQNQGAQLTNSALPPQNPTPPPPPANSISTTAGNDNITGDSLDNFILGSSGTDTITGGLGTDTISYLSLTSGITIEAKGIVDKGAAGTDSLQNIEQIIAPLGQINTIDASTGSGTASINVDLSQNRLAVNNLPGIGTLNFTVENFVNVTGTPNVDVLTGNIQNNSLVGGDGNDTLSGLRGNDTLIGVNPSSATPGSNETDVLIGGRGRDIFVLGDATKTYYQGTGVALIQDFQQGIDRIQLRGSLSDYNIVGNSINLAGTSDQIAVIQGGFTPDSFLFV
>NC_019729.1|WP_015179576.1|7412493_7413408_-|alpha/beta-fold-hydrolase
MTSSTPTSSTAVAPQTWLWKGFPICYQAAGSRGPAVVFVHGFGASWGHWRKNLPALAADCRCYAIDLIGFGGSAKPAPKLEIDYTFETWGQLIADFCREVAGGPAFLVGNSIGCVAIMQAAVDFPDIASGVILLNCSLRLLHDRKRAEMPWYRSFGAPIAQKLLNVKWISQLFFKQLATPKTVKKVLLQAYHRPEAVTDELVNMLLKPAQDSGAVEVFVAFISYSQGPLPEDLLPRLSCPALILWGTDDPWEPIALGRELAKFPAVEKFIPLEGVGHCPQDEAPELVNPILLDWIKGRSAFAEN
>NC_019729.1|WP_015179577.1|7413657_7414587_+|agmatinase
MPTIVSTAVVPFLGSEIVPDYDTAKVVILPIPYEATTTYRRGCENGPAKLLEASHQLECYDEELDSEVCYDVGIYTKEPIADTRNRQPVSSSEMLQVTQAAVHQLVTENKFVISLGGEHSITAGVVEGYRQAYPNEPFTVVQIDAHGDLRHEYEGSIHNHACVMRRIVDMGLPTLQIGIRAICKEEADLIKAKQLNVIRAREIATQPDWADRAIASITTKRVFLTIDLDGIDPTLIPGVGTPEPGGLNWYSLTGFLRRIFESYEVIGCDIMELAPVVDSVVSEFTAAKLAYKMIGYQALAQGWLKPDEE
>NC_019729.1|WP_015179578.1|7414720_7415278_+|thioredoxin-family-protein
MSLLIDTTGTPINGYAPDFELPGVDEEVHHLARYLEKFRAIAVIFMCNHCPYVQFYLNRLKEIQAEFQDRGVTLIGMNANDANQYPEDSFENMKTFAANNQLNFPYIRDVAQDVAESFGASKTPEVFLLDRDGRLRYKGLIDDNAEDPAAVQVSYLRGAIDQLLNSQPVEPSTTEAVGCSIKWRS
>NC_019729.1|WP_015179579.1|7415508_7416309_+|molybdate-ABC-transporter-substrate-binding-protein
MKTKRILNLIVVAVAAMTLLITWNLFQSVPPVTAQQQTSLTVSAAISLSQALQEIKTVYQQINPNVTITYNFGASGALAQQIQQGAPVDIFFSAATKQMNDLQQSNLLINDTRRNLLTNRLVLITPKNGLALSDFKQLTDARIKKIAIGEPKSVPVGQYAQEMLNKLGLWRQIQPKLVLGNNVRQVLTFVESGNADAGIVYTTDAKASDKVTLRLTAAENLHSPIVYPLAVIGNSRNPAAAKGFVDFLGGDRAKIVFQKYGFGIAS
>NC_019729.1|WP_015179580.1|7416617_7418435_+|molybdate-ABC-transporter-permease-subunit
MEFDFSPLWISLKSSTIATFFTFFLGIAAARWMLSTRIRGKALIEGIFISPLVLPPTVVGFLLLLLFGRNGAIGQFLLQFDLTIIFTWQAAAITATVVSFPLMYKTALGAFEQIDANLLNAARTLGASEWQVFWRIMLPLAWPGILAGTILAFARALGEFGATLMLAGNIPGQTQTIPMAIYFAVEAGEMRQAAIWVLIILSISLSVLTAVNFWTDLQRRSPKANSSYRLQSNIPQVTSSFTTKPQKQPKSGLCLHIFKPLSSFSLDVGFDIGPEVLGILGASGSGKSMTLRCIAGLETPMSGKIAVNGRVLFDSVQGINVASKDRRIGFLFQNYALFPHLTVAQNIAFGLQHLSESEQKLRVKEQLISVQMSGLENRYPHELSGGQQQRVALARAIAPSPELLLLDEPFSALDTHLRSQLERELMQTLANYRGITLFVSHNLEEIYRVCKNLLVLAEGRPIAFDTKENIFDRPGNFTVAQLTGCKNFSAAKPISVTLVEAIDWGCTLTVVEPIPKSLVSVGIRAHQLSFVSGCDRENTFACWIASTVETPHRVTLYLKLHSPSNDSQDYHLQAEVFKEKWRAMKDNPFPWYVHIEPIRLILMEA
>NC_019729.1|WP_015179581.1|7418525_7418924_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTQKVQKTDAEWQQQLTPEQFKVTRKKGTERAFSGEYHDNKKPGIYKCICCGTELFKSETKYDSGTGWPSFYAPVSEENVKCESDNTLFMRRTEVLCAVCDAHLGHVFNDGPKPTGQRYCMNSAALNFVPKD
>NC_019729.1|WP_015179582.1|7419205_7419928_+|UMP-kinase
MVYQRVLLKLSGEALMGSLGYGIDPVVVQSIAQEVAKVVSQGIQIAIVVGGGNIFRGVKAASAGMDRATADYVGMIATVMNAITLQDALEQAGVPTRVQSAIAMQEVAEPYIRRRAIRHLEKKRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGVYDSDPHLNPNARRYQTLTYAHVLNQDLRVMDSTAIALCKENNIPIMVFDLSVSGNIYRAVMGESIGTLVGGFCEVS
>NC_019729.1|WP_015179583.1|7419914_7420463_+|ribosome-recycling-factor
MKLADAEDHMQKAVEATQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLANIGTPDATTITIQPFDRTALNSIEKAISLSDVGLVPNNDGSVIRLNIPPLTSDRRQEFVKMAGKFAEEGKVAIRNIRRDAVDSIRKQEKSSDISKDESRDLQDKIQKLTDKYVAKIEEVLAAKEKDITTV
>NC_019729.1|WP_083888221.1|7420649_7420787_+|NAD(P)-binding-protein
MFDCIIVGAGPAGSTAAYHLAKQGRSVARFAAGRRHSQSRRPPVR

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Crispr_ID: NC_019729_67

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019729_67

7425997-7426156

Orphan

Consensus_repeat	Method
CCGCTGAGGTTCGCGCCGCTGAGGT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_019729_67

>merge|NC_019729|67|7425997-7426156|CRISPRCasFinder
TCGCTGAGATAGGCGCTTCTTAAGTCAGCACCGCTGAGGTTCGCGCCGCTGAGGTTCGCCCCCGTCAGGTTGACGCCAAACAGGCTGGTGCCGCTGAGGTTCGCACCGCTGAGGTCAGCCCCCGTGAGGTTGGCTCGGCTGAGGTTAGCCAACCTCAAGT

>NC_019729|67|63|7425997-7426156|CRISPRCasFinder
TCGCTGAGATAGGCGCTTCTTAAGT	CAGCACCGCTGAGGTTCGCG
CCGCTGAGGTTCGCCCCCGTCAGGT	TGACGCCAAACAGGCTGGTG
CCGCTGAGGTTCGCACCGCTGAGGT	CAGCCCCCGTGAGGTTGGCT
CGGCTGAGGTTAGCCAACCTCAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019729.1\|WP_015179579.1\|7415508_7416309_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
NC_019729.1\|WP_015179594.1\|7434627_7435656_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179596.1\|7437042_7437300_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179590.1\|7429064_7429418_-\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224848
NC_019729.1\|WP_015179591.1\|7429695_7430940_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_019729.1\|WP_015179584.1\|7421728_7422181_+\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|271319
NC_019729.1\|WP_015179593.1\|7431977_7434386_+\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|185504
NC_019729.1\|WP_015179581.1\|7418525_7418924_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NC_019729.1\|WP_015179580.1\|7416617_7418435_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224043
NC_019729.1\|WP_015179592.1\|7431173_7431824_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179585.1\|7422550_7425556_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_019729.1\|WP_015179582.1\|7419205_7419928_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NC_019729.1\|WP_015179595.1\|7435657_7437073_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|273380
NC_019729.1\|WP_015179583.1\|7419914_7420463_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_019729.1\|WP_015179598.1\|7437437_7438409_+\|hypothetical-protein	unknown	unknown	unknown
NC_019729.1\|WP_015179587.1\|7426600_7427245_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019729.1\|WP_083888221.1\|7420649_7420787_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|223717
NC_019729.1\|WP_015179578.1\|7414720_7415278_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NC_019729.1\|WP_015179577.1\|7413657_7414587_+\|agmatinase	unknown	unknown	gnl\|CDD\|212539
NC_019729.1\|WP_015179589.1\|7428330_7428768_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267

Protein	Function_ID	Function_description	E-value
NC_019729.1\|WP_015179579.1\|7415508_7416309_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.7615e-104
NC_019729.1\|WP_015179590.1\|7429064_7429418_-\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|224848	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown].	8.36405e-36
NC_019729.1\|WP_015179591.1\|7429695_7430940_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.88429e-121
NC_019729.1\|WP_015179584.1\|7421728_7422181_+\|NADAR-family-protein	gnl\|CDD\|271319	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins. This family of uncharacterized domains was initially classified as Domain of Unknown Function (DUF1768). It contains members such as the E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. More recently, this family has been predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and has been named the NADAR (NAD and ADP-ribose) superfamily.	1.9988e-69
NC_019729.1\|WP_015179593.1\|7431977_7434386_+\|EF-hand-domain-containing-protein	gnl\|CDD\|185504	PTZ00184, PTZ00184, calmodulin; Provisional.	2.91268e-44
NC_019729.1\|WP_015179581.1\|7418525_7418924_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	5.33776e-89
NC_019729.1\|WP_015179580.1\|7416617_7418435_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	1.90781e-121
NC_019729.1\|WP_015179585.1\|7422550_7425556_+\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.22468e-37
NC_019729.1\|WP_015179582.1\|7419205_7419928_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	3.12535e-148
NC_019729.1\|WP_015179595.1\|7435657_7437073_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|273380	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70). [Transport and binding proteins, Amino acids, peptides and amines].	1.31565e-29
NC_019729.1\|WP_015179583.1\|7419914_7420463_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	6.19385e-103
NC_019729.1\|WP_015179587.1\|7426600_7427245_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.1056e-34
NC_019729.1\|WP_083888221.1\|7420649_7420787_+\|NAD(P)-binding-protein	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	4.62494e-10
NC_019729.1\|WP_015179578.1\|7414720_7415278_+\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	2.88691e-71
NC_019729.1\|WP_015179577.1\|7413657_7414587_+\|agmatinase	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	7.26352e-111
NC_019729.1\|WP_015179589.1\|7428330_7428768_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	6.82106e-12

>NC_019729.1|WP_015179585.1|7422550_7425556_+|GAF-domain-containing-protein
MQLRENTQELHYKLDREVLIRRITERIRQSLELEDILTSTVAEVRSFLKTDRIMIYRFSTDGSGEVVAESINNNCLPSLKGLHFPADDIPASAREMYVSLRQRTIIDVNSGTIVLSPLDAADTGQPLVNEEMHYRSLDPCHTAYLMAMGVQSSLVVPILHRRSASPNSKTDICEAATCLTRYEPGNDRKIHIELWGLLVSHHSAPLNISPADLEVVQLVSDQLSSAIAHALLLQQTRSQAAREATVSRIAALLYGHVNIQLQQGLEATVTALGGSGGRLYLNQPKINGEKLSTPKIEGGLPIAPAHSDATFELFTTGEQPTLPNWEKVKAIEAHPLWQEWLTKGFKNTEELPKFPIFTNSQFPVLIITDLYKEPLFRVLVPAFQSTKIRGLLVIPLHYKQQVVGCLTIFRNAIDTEKMWAGRFDSSAAQTLPRQSFELWREIKKGQSPEWKYEEIEQALAIGSQFCSAIGQYVLYKEVQTLNANLERQVQERTAQLQKSLDFAKVLTRVRDQIRSTLDLKIILQTIVREVRVLLDTDRTVIYQFTADKQGEVVVEAVCGQWRSILGIASPQGCFPEVSDCFYRAGRVRAINDINTEDLTPCHRQFLEELQVRGSLIVPMKGKDSQLWGLLIAHECSGPRVWQTAEQELLQHLAAQAAIAIHQAELYQESLNAATADRLKAEQLAKTLTELHNTQAQLIQTEKMSSLGQLLAGVAHEINNPVNFIYGNLSHASEYTKDLLCLLELYRQHYPNPNPEISECSEAIDIEFLAEDLPKILGSMTVGVERIRQLVVSLRNFSRSDRAEKKAVDIHEGIDSTLLILQHRIKANCDRKTVEIIKEYGNLPLVECYASSLNQVFMNLIGNALDALEIGQKERVMNLPLKAASAAATHLSSQMLAVESGDINATTECLIPDFPSPCIRIRTQLIDEKKVGICIADNGHGIPKELISHIFNPFFTTKPVGRGTGLGLSISYQIVVEKHQGVLKCVSVPGHGTEFWIEIPLN
>NC_019729.1|WP_015179584.1|7421728_7422181_+|NADAR-family-protein
MIIYFYKVEEPYGCFSNFSLHDICLHGQYWLTVEHYYQAQKFVSTDKRLVAAIQAVATPQEAAKLGRDPNHRIRADWEAVKIPIMREAVLTKFLTHTDIQAILLATGDRVIVEDSPTDYYWGCGCDRTGQNHLGKILMSVRQEISQHPGR
>NC_019729.1|WP_083888221.1|7420649_7420787_+|NAD(P)-binding-protein
MFDCIIVGAGPAGSTAAYHLAKQGRSVARFAAGRRHSQSRRPPVR
>NC_019729.1|WP_015179583.1|7419914_7420463_+|ribosome-recycling-factor
MKLADAEDHMQKAVEATQRSFNTIRTGRANASLLDRVMVDYYGSPTPIKSLANIGTPDATTITIQPFDRTALNSIEKAISLSDVGLVPNNDGSVIRLNIPPLTSDRRQEFVKMAGKFAEEGKVAIRNIRRDAVDSIRKQEKSSDISKDESRDLQDKIQKLTDKYVAKIEEVLAAKEKDITTV
>NC_019729.1|WP_015179582.1|7419205_7419928_+|UMP-kinase
MVYQRVLLKLSGEALMGSLGYGIDPVVVQSIAQEVAKVVSQGIQIAIVVGGGNIFRGVKAASAGMDRATADYVGMIATVMNAITLQDALEQAGVPTRVQSAIAMQEVAEPYIRRRAIRHLEKKRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGVYDSDPHLNPNARRYQTLTYAHVLNQDLRVMDSTAIALCKENNIPIMVFDLSVSGNIYRAVMGESIGTLVGGFCEVS
>NC_019729.1|WP_015179581.1|7418525_7418924_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTQKVQKTDAEWQQQLTPEQFKVTRKKGTERAFSGEYHDNKKPGIYKCICCGTELFKSETKYDSGTGWPSFYAPVSEENVKCESDNTLFMRRTEVLCAVCDAHLGHVFNDGPKPTGQRYCMNSAALNFVPKD
>NC_019729.1|WP_015179580.1|7416617_7418435_+|molybdate-ABC-transporter-permease-subunit
MEFDFSPLWISLKSSTIATFFTFFLGIAAARWMLSTRIRGKALIEGIFISPLVLPPTVVGFLLLLLFGRNGAIGQFLLQFDLTIIFTWQAAAITATVVSFPLMYKTALGAFEQIDANLLNAARTLGASEWQVFWRIMLPLAWPGILAGTILAFARALGEFGATLMLAGNIPGQTQTIPMAIYFAVEAGEMRQAAIWVLIILSISLSVLTAVNFWTDLQRRSPKANSSYRLQSNIPQVTSSFTTKPQKQPKSGLCLHIFKPLSSFSLDVGFDIGPEVLGILGASGSGKSMTLRCIAGLETPMSGKIAVNGRVLFDSVQGINVASKDRRIGFLFQNYALFPHLTVAQNIAFGLQHLSESEQKLRVKEQLISVQMSGLENRYPHELSGGQQQRVALARAIAPSPELLLLDEPFSALDTHLRSQLERELMQTLANYRGITLFVSHNLEEIYRVCKNLLVLAEGRPIAFDTKENIFDRPGNFTVAQLTGCKNFSAAKPISVTLVEAIDWGCTLTVVEPIPKSLVSVGIRAHQLSFVSGCDRENTFACWIASTVETPHRVTLYLKLHSPSNDSQDYHLQAEVFKEKWRAMKDNPFPWYVHIEPIRLILMEA
>NC_019729.1|WP_015179579.1|7415508_7416309_+|molybdate-ABC-transporter-substrate-binding-protein
MKTKRILNLIVVAVAAMTLLITWNLFQSVPPVTAQQQTSLTVSAAISLSQALQEIKTVYQQINPNVTITYNFGASGALAQQIQQGAPVDIFFSAATKQMNDLQQSNLLINDTRRNLLTNRLVLITPKNGLALSDFKQLTDARIKKIAIGEPKSVPVGQYAQEMLNKLGLWRQIQPKLVLGNNVRQVLTFVESGNADAGIVYTTDAKASDKVTLRLTAAENLHSPIVYPLAVIGNSRNPAAAKGFVDFLGGDRAKIVFQKYGFGIAS
>NC_019729.1|WP_015179578.1|7414720_7415278_+|thioredoxin-family-protein
MSLLIDTTGTPINGYAPDFELPGVDEEVHHLARYLEKFRAIAVIFMCNHCPYVQFYLNRLKEIQAEFQDRGVTLIGMNANDANQYPEDSFENMKTFAANNQLNFPYIRDVAQDVAESFGASKTPEVFLLDRDGRLRYKGLIDDNAEDPAAVQVSYLRGAIDQLLNSQPVEPSTTEAVGCSIKWRS
>NC_019729.1|WP_015179577.1|7413657_7414587_+|agmatinase
MPTIVSTAVVPFLGSEIVPDYDTAKVVILPIPYEATTTYRRGCENGPAKLLEASHQLECYDEELDSEVCYDVGIYTKEPIADTRNRQPVSSSEMLQVTQAAVHQLVTENKFVISLGGEHSITAGVVEGYRQAYPNEPFTVVQIDAHGDLRHEYEGSIHNHACVMRRIVDMGLPTLQIGIRAICKEEADLIKAKQLNVIRAREIATQPDWADRAIASITTKRVFLTIDLDGIDPTLIPGVGTPEPGGLNWYSLTGFLRRIFESYEVIGCDIMELAPVVDSVVSEFTAAKLAYKMIGYQALAQGWLKPDEE
>NC_019729.1|WP_015179587.1|7426600_7427245_-|pentapeptide-repeat-containing-protein
MNVDELLKLYAIGERNFSGVYLHEVYLYEAELIGANLYEADLIGAHLSKAKLNRVNFGKANLCKINLSKADLGGADLTEALLVEANLNRAELMGANLSKADLSKASLIQATLIGANLSRSTLSRADLHGVNLYGVNLRRAVLTECDLIGANLSKVDLSGADLMGASLIRADLTEAILSASDLSGANLLGANLTKVNLSGVYLKGTTMPDGTIHD
>NC_019729.1|WP_015179589.1|7428330_7428768_+|helix-turn-helix-domain-containing-protein
MAGVCKLSITETSEELKNLLNEQKTASGFQKIQALYLFKICHVKTVKELAMTIGVNRITVQRWLRKYRSDGLEGLLETKHSGGRKPAIPPLARASLAMRLSDPQKGFKSYGEIQEWLQQEYSIEASYKAVYATVRYHLKAKLTKV
>NC_019729.1|WP_015179590.1|7429064_7429418_-|metal-sensitive-transcriptional-regulator
MILSDTSTDKSLPSNSQHPHDDRSAHPHHHDEESMRRLVNRLSRIEGHVRGIKTMVQENRPCPEVLVQVAAVRGALDRVARIILDEHLTECIARAAKEGNIDTEIEELKAALDRFLP
>NC_019729.1|WP_015179591.1|7429695_7430940_+|trypsin-like-peptidase-domain-containing-protein
MRLFKFFRPAPRIGARWFALILAMTIALSALTINAAPAAAAEGTNPPNLKFQSSPATPPNPQLLALRSPELPGDTGSFVTAAVDRVGPAVVRIDTERTVSRNLDPLMEDPFFRRFLGEDLRSLTPRQERLRGQGSGFIIDKSGIVLTNAHVVDKADRVTVTLNDGRTFPGKVQGTDEVTDLAVVKINTKEVNLPVATLGDSDAVKVGDWAIAVGNPLGFDNTVTLGIISTLKRSSAAVGIPDKRLDFIQTDAAINPGNSGGPLLNSRGEVIGINTAIRADAMGIGFAIPIDKAKAIYAQLAKGEQVSHPFLGIQMIALTPEMARENNADPNAPLIVPEVQGVLVMRVVPNTPAEKAGIRKGDVIVQIDGEAVTQAEQLQSLVDNSKIGQILKLKVRRGAQIKEVAVQTAQLEDF
>NC_019729.1|WP_015179592.1|7431173_7431824_+|hypothetical-protein
MTRVQLAYPKIPDSKNCPDEQCIAFEKYDGTNLHWVWEVELGWYAFGTRRSRFDLDEMGIAEFNGAHPGLEAAPEIFKRDFASPLESIFRENEQYQCPEITVFAEFFGANSFAGMHQKDDRKQLVLFDVETDRGMVVPDRFIQDFGKLNIARVIYRGKLTGKFMDDVRKGKYGVDEGVVCKGGSNANNLWMVKIKTDAYMQRLQQAFQDDWENYWE
>NC_019729.1|WP_015179593.1|7431977_7434386_+|EF-hand-domain-containing-protein
MTSVQIEKKSMTEEEVAKLWEAFQVFDADGSGGISSEELGQVMRSLGQSPNETELRDMIKEVDVDLSGSIDFDEFKMLMVSQQGDRQSRLKMAFSVFDENGSGQITRDELHGVMSQFGLTEQELDEIIKEVDHDGDASIDFEEFCKLVPDESEIATGYQDSPVPIVSTQTTEISDSTAAAIATTATAIDEADSATIEPNLEEAPTDSNPEIARLKELLAQHPQAESKRGTSRLQMQIGLFRLIQGAAYRSFRESFSANHETHLRVRNLPYRIADFVQFVRCAIGLYKGLGVVESACNPVLDAVVKSIEDEYARLQDRIKNWKTIEKTPEMLAEQKAMLEARGKSATAKEKFAAGVEFAITIKKKSLNLRDIAEGVLAINELNRLRKMELSEEMAPPPAKSEGDPKEYLKKWNRVILSDASEEIDGAMMPVAYWYEDFMPKLLAAFSVSTAAEIPFNTVPDEAALNQWYEATKTSGEFGRYGADVVESFPKCAPKQKLMLKQAWRLTHNYLNGVQKRRERLEFGRESGELSQYVSFIDVYIDRSEIKNSQMRVSFPYYIGPAVWRFFHTTAEIVSTKTPQQQKTLVAIFKDFFKLFATMYPCPYCRHHLNAYVVQNKEVEMYPVEYLVLGRDPRLNNFEVSMEAKLSTVVDGDSLRLFFWKLHNTVSSSIARSEEWYHKDEKAFYTTRYWPSIDSELARAKALKHISIATDRMYRLYGMLKPAARLTGVRATLQKLLDKRDEEGIKEACLVAQDYIKELEEAIVTGQFLQETYYFDPDLVDRAPVFSPEEEEFARSGVFVEVA
>NC_019729.1|WP_015179594.1|7434627_7435656_+|hypothetical-protein
MGEAKRRKKLNPNYEKLTSQNDPIGIEENYECYGERAEYFKNLDFYLNQGGAFEESLPRYHRYRSVTESQLFQFIQNAIDREEQTATYILNKVKSLSDLTEIQSDLLGLVDKSIMSKRSGDLNQAFKYYDQVFSHNQTWFMLWYGLAKLLCLFREYRMAFACIKICTYLYPKMWNGRQYHSDPDLSYHYDQIYSLAIAGEENEPYLRTLGRPLNTVRIVNSNGKVIANSPVGKIKVVKPESLSSDIKTQVKGDSHNMVRIKVVDVGRSGNPEYAEYTQAQIKEFRSTIVTVLTRNLMPTSDDFVETVLGASLACHYWRKDLSFVGAVEQVVQDIERTMGRGY
>NC_019729.1|WP_015179595.1|7435657_7437073_+|tetratricopeptide-repeat-protein
MGKAKRRKQTPNYRKPTSQDDLGDKKGAIADYNRAIELQPDDALAYYNRGNVRYNLGDKKGAIADFNKAIELQPDLAEAYGNRGLFRSELGDKKGAIADLNKAIELQPDLALAYVNRGAVRSKLGDKKGAIADYNKAIELQPDYAQAYYNRGLVRSELGDKKGAIADYNKAIELKPDLALAYYNRGLVRSELGDKKGAIADYNKAIELQPDYAQAYGNRGTVRSELGDKKGAIADLNKVIELKPDLAQAYYNRGLFRSELGDKKGAIADFNKAIELQPDDAQAYYKRGNVRYILGDKKGAITDFNKAIELQPDDAFAYYNRGNVRYILGDKKGAIADYNKAIELKPDDAQAYFNRGNVRSELGDKKGEIADYNKVIELQPDYADAYINRGLVRYDLGDKKGAIADLNKAIELQPDYAFAYGNRGNVRYNLGDKKGAIEDLQKAAQLFKAQGQMADYEKAMELWQKVIVTTG
>NC_019729.1|WP_015179596.1|7437042_7437300_+|hypothetical-protein
MAKGDSHNRVRIKVVDVGRSGNPEYAEYTQAQIEEFRSTIVTVLTRNLMPTSDDFVETVLGASLACHYWRKDLSFVVLLNKLYKI
>NC_019729.1|WP_015179598.1|7437437_7438409_+|hypothetical-protein
MTKDKKVMNELKNLIYTQLKKKYNKCLWPKSNCTEDCINAHSIQNGQILDQLASKDHVVMAVPKQNLNTGPEIEFKQVGRNQATTFTGLCQKHDSELFRPIDINEFDVSNQQQKFLLAYRSVLRELHTRIKVAIELNTFYQGCVERGKCDPNNLNDPIRMGANIKKELASDFYKYKQVYDKIYNSNSFTKIEHECIRIERNCPLAVSSLFDPIESSSGQKRLEPKFIVLNVFPQKKDTIILLSYLRDHQQALKPHANKIITATGEDQLYLLSETILRYCENFVISPEHFNLFSQQKIDAIKNFFLATLTQIDLDHNDQNLMLF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_019729_10	10.1\|874089\|24\|NC_019729\|CRISPRCasFinder	874089-874112	24	NC_019729.1	4961135-4961158	2	0.917
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_019729.1	2069095-2069119	0	1.0
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_019729.1	2069130-2069154	0	1.0
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_019729.1	1072166-1072190	0	1.0
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_019729.1	5794919-5794943	1	0.96
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_019729.1	6540616-6540640	2	0.92
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_019729.1	1619865-1619889	2	0.92
NC_019729_13	13.4\|1072105\|19\|NC_019729\|CRT	1072105-1072123	19	NC_019729.1	7158302-7158320	2	0.895
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	4273128-4273155	1	0.964
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	4882083-4882110	1	0.964
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	2917017-2917044	1	0.964
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	2949589-2949616	2	0.929
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	7191874-7191901	2	0.929
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	1437436-1437463	2	0.929
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	5786579-5786606	2	0.929
NC_019729_26	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	NC_019729.1	7049610-7049637	2	0.929
NC_019729_39	39.1\|4217777\|30\|NC_019729\|CRISPRCasFinder	4217777-4217806	30	NC_019729.1	5786476-5786505	0	1.0
NC_019729_39	39.1\|4217777\|30\|NC_019729\|CRISPRCasFinder	4217777-4217806	30	NC_019729.1	5786635-5786664	0	1.0
NC_019729_39	39.1\|4217777\|30\|NC_019729\|CRISPRCasFinder	4217777-4217806	30	NC_019729.1	6048458-6048487	0	1.0
NC_019729_39	39.1\|4217777\|30\|NC_019729\|CRISPRCasFinder	4217777-4217806	30	NC_019729.1	1646908-1646937	0	1.0
NC_019729_39	39.1\|4217777\|30\|NC_019729\|CRISPRCasFinder	4217777-4217806	30	NC_019729.1	4852089-4852118	0	1.0
NC_019729_41	41.1\|4700691\|36\|NC_019729\|CRISPRCasFinder	4700691-4700726	36	NC_019729.1	962593-962628	2	0.944
NC_019729_49	49.1\|5412040\|33\|NC_019729\|CRISPRCasFinder	5412040-5412072	33	NC_019729.1	1646907-1646939	0	1.0
NC_019729_49	49.1\|5412040\|33\|NC_019729\|CRISPRCasFinder	5412040-5412072	33	NC_019729.1	4852088-4852120	0	1.0
NC_019729_49	49.1\|5412040\|33\|NC_019729\|CRISPRCasFinder	5412040-5412072	33	NC_019729.1	5786474-5786506	0	1.0
NC_019729_49	49.1\|5412040\|33\|NC_019729\|CRISPRCasFinder	5412040-5412072	33	NC_019729.1	5786633-5786665	0	1.0
NC_019729_49	49.1\|5412040\|33\|NC_019729\|CRISPRCasFinder	5412040-5412072	33	NC_019729.1	6048456-6048488	0	1.0
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	5824341-5824369	0	1.0
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	1094383-1094411	1	0.966
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	1094427-1094455	1	0.966
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	3238073-3238101	1	0.966
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	3727399-3727427	1	0.966
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	1449733-1449761	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	1449821-1449849	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	1648762-1648790	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	1848275-1848303	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	2216249-2216277	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	2440241-2440269	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	3921755-3921783	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	4990862-4990890	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	5476388-5476416	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	7198670-7198698	2	0.931
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019729.1	7239027-7239055	2	0.931
NC_019729_54	54.1\|5833441\|41\|NC_019729\|CRISPRCasFinder	5833441-5833481	41	NC_019729.1	3753297-3753337	2	0.951
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	1041207-1041230	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	1041240-1041263	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	5363291-5363314	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	1027015-1027038	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	1027027-1027050	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	1041144-1041167	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	5015420-5015443	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	5015426-5015449	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	5015432-5015455	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_019729.1	5357338-5357361	2	0.917
NC_019729_64	64.4\|6967464\|18\|NC_019729\|CRT	6967464-6967481	18	NC_019729.1	1746764-1746781	1	0.944
NC_019729_64	64.4\|6967464\|18\|NC_019729\|CRT	6967464-6967481	18	NC_019729.1	5015384-5015401	1	0.944
NC_019729_64	64.4\|6967464\|18\|NC_019729\|CRT	6967464-6967481	18	NC_019729.1	5015408-5015425	1	0.944
NC_019729_64	64.4\|6967464\|18\|NC_019729\|CRT	6967464-6967481	18	NC_019729.1	5015444-5015461	1	0.944
NC_019729_64	64.4\|6967464\|18\|NC_019729\|CRT	6967464-6967481	18	NC_019729.1	6804746-6804763	1	0.944
NC_019729_64	64.4\|6967464\|18\|NC_019729\|CRT	6967464-6967481	18	NC_019729.1	6804782-6804799	1	0.944
NC_019729_67	67.3\|7426112\|20\|NC_019729\|CRISPRCasFinder	7426112-7426131	20	NC_019729.1	911438-911457	2	0.9

1. spacer 10.1|874089|24|NC_019729|CRISPRCasFinder matches to position: 4961135-4961158, mismatch: 2, identity: 0.917

gcgcaatcgattgactgtgggctg	CRISPR spacer
gcgcaatcgattgactgttgactg	Protospacer
****************** *.***

2. spacer 13.3|1072038|25|NC_019729|CRT matches to position: 2069095-2069119, mismatch: 0, identity: 1.0

taattcttgtggggtgggcttctag	CRISPR spacer
taattcttgtggggtgggcttctag	Protospacer
*************************

3. spacer 13.3|1072038|25|NC_019729|CRT matches to position: 2069130-2069154, mismatch: 0, identity: 1.0

taattcttgtggggtgggcttctag	CRISPR spacer
taattcttgtggggtgggcttctag	Protospacer
*************************

4. spacer 13.3|1072038|25|NC_019729|CRT matches to position: 1072166-1072190, mismatch: 0, identity: 1.0

taattcttgtggggtgggcttctag	CRISPR spacer
taattcttgtggggtgggcttctag	Protospacer
*************************

5. spacer 13.3|1072038|25|NC_019729|CRT matches to position: 5794919-5794943, mismatch: 1, identity: 0.96

taattcttgtggggtgggcttctag	CRISPR spacer
taactcttgtggggtgggcttctag	Protospacer
***.*********************

6. spacer 13.3|1072038|25|NC_019729|CRT matches to position: 6540616-6540640, mismatch: 2, identity: 0.92

taattcttgtggggtgggcttctag	CRISPR spacer
taatttttgtgggatgggcttctag	Protospacer
*****.*******.***********

7. spacer 13.3|1072038|25|NC_019729|CRT matches to position: 1619865-1619889, mismatch: 2, identity: 0.92

taattcttgtggggtgggcttctag	CRISPR spacer
taaatattgtggggtgggcttctag	Protospacer
*** * *******************

8. spacer 13.4|1072105|19|NC_019729|CRT matches to position: 7158302-7158320, mismatch: 2, identity: 0.895

gatttcacaggcaagatgc	CRISPR spacer
gattttacaggcaagctgc	Protospacer
*****.********* ***

9. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 4273128-4273155, mismatch: 1, identity: 0.964

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctaaaatctaaaatcgactgacc	Protospacer
************** *************

10. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 4882083-4882110, mismatch: 1, identity: 0.964

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctcaaatctcaaatcgactgacc	Protospacer
******* ********************

11. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 2917017-2917044, mismatch: 1, identity: 0.964

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctcaaatctcaaatcgactgacc	Protospacer
******* ********************

12. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 2949589-2949616, mismatch: 2, identity: 0.929

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatcaaaaatctcaaatcgattgacc	Protospacer
****** ***************.*****

13. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 7191874-7191901, mismatch: 2, identity: 0.929

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctcaaatctcaaatcgattgacc	Protospacer
******* **************.*****

14. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 1437436-1437463, mismatch: 2, identity: 0.929

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctcaaatctcaaatcgattgacc	Protospacer
******* **************.*****

15. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 5786579-5786606, mismatch: 2, identity: 0.929

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctcaaatctcaaatcgaatgacc	Protospacer
******* ************** *****

16. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to position: 7049610-7049637, mismatch: 2, identity: 0.929

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatctcaaatctcaaatcgattgacc	Protospacer
******* **************.*****

17. spacer 39.1|4217777|30|NC_019729|CRISPRCasFinder matches to position: 5786476-5786505, mismatch: 0, identity: 1.0

cttgcatcccccgaatttatctcgcgcaag	CRISPR spacer
cttgcatcccccgaatttatctcgcgcaag	Protospacer
******************************

18. spacer 39.1|4217777|30|NC_019729|CRISPRCasFinder matches to position: 5786635-5786664, mismatch: 0, identity: 1.0

cttgcatcccccgaatttatctcgcgcaag	CRISPR spacer
cttgcatcccccgaatttatctcgcgcaag	Protospacer
******************************

19. spacer 39.1|4217777|30|NC_019729|CRISPRCasFinder matches to position: 6048458-6048487, mismatch: 0, identity: 1.0

cttgcatcccccgaatttatctcgcgcaag	CRISPR spacer
cttgcatcccccgaatttatctcgcgcaag	Protospacer
******************************

20. spacer 39.1|4217777|30|NC_019729|CRISPRCasFinder matches to position: 1646908-1646937, mismatch: 0, identity: 1.0

cttgcatcccccgaatttatctcgcgcaag	CRISPR spacer
cttgcatcccccgaatttatctcgcgcaag	Protospacer
******************************

21. spacer 39.1|4217777|30|NC_019729|CRISPRCasFinder matches to position: 4852089-4852118, mismatch: 0, identity: 1.0

cttgcatcccccgaatttatctcgcgcaag	CRISPR spacer
cttgcatcccccgaatttatctcgcgcaag	Protospacer
******************************

22. spacer 41.1|4700691|36|NC_019729|CRISPRCasFinder matches to position: 962593-962628, mismatch: 2, identity: 0.944

tttagattttagattttagatttattcccgtcagct	CRISPR spacer
tttagattttagattttagatttactcccgtctgct	Protospacer
************************.******* ***

23. spacer 49.1|5412040|33|NC_019729|CRISPRCasFinder matches to position: 1646907-1646939, mismatch: 0, identity: 1.0

ccttgcatcccccgaatttatctcgcgcaagtc	CRISPR spacer
ccttgcatcccccgaatttatctcgcgcaagtc	Protospacer
*********************************

24. spacer 49.1|5412040|33|NC_019729|CRISPRCasFinder matches to position: 4852088-4852120, mismatch: 0, identity: 1.0

ccttgcatcccccgaatttatctcgcgcaagtc	CRISPR spacer
ccttgcatcccccgaatttatctcgcgcaagtc	Protospacer
*********************************

25. spacer 49.1|5412040|33|NC_019729|CRISPRCasFinder matches to position: 5786474-5786506, mismatch: 0, identity: 1.0

ccttgcatcccccgaatttatctcgcgcaagtc	CRISPR spacer
ccttgcatcccccgaatttatctcgcgcaagtc	Protospacer
*********************************

26. spacer 49.1|5412040|33|NC_019729|CRISPRCasFinder matches to position: 5786633-5786665, mismatch: 0, identity: 1.0

ccttgcatcccccgaatttatctcgcgcaagtc	CRISPR spacer
ccttgcatcccccgaatttatctcgcgcaagtc	Protospacer
*********************************

27. spacer 49.1|5412040|33|NC_019729|CRISPRCasFinder matches to position: 6048456-6048488, mismatch: 0, identity: 1.0

ccttgcatcccccgaatttatctcgcgcaagtc	CRISPR spacer
ccttgcatcccccgaatttatctcgcgcaagtc	Protospacer
*********************************

28. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 5824341-5824369, mismatch: 0, identity: 1.0

caggaacaggctttccgggctgttccaca	CRISPR spacer
caggaacaggctttccgggctgttccaca	Protospacer
*****************************

29. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 1094383-1094411, mismatch: 1, identity: 0.966

caggaacaggctttccgggctgttccaca	CRISPR spacer
cagcaacaggctttccgggctgttccaca	Protospacer
*** *************************

30. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 1094427-1094455, mismatch: 1, identity: 0.966

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccgggctgttccaca	Protospacer
**.**************************

31. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 3238073-3238101, mismatch: 1, identity: 0.966

caggaacaggctttccgggctgttccaca	CRISPR spacer
caggaacaggctttccggtctgttccaca	Protospacer
****************** **********

32. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 3727399-3727427, mismatch: 1, identity: 0.966

caggaacaggctttccgggctgttccaca	CRISPR spacer
catgaacaggctttccgggctgttccaca	Protospacer
** **************************

33. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 1449733-1449761, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
catgaacaggctttcggggctgttccaca	Protospacer
** ************ *************

34. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 1449821-1449849, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
catgaacaggctttcggggctgttccaca	Protospacer
** ************ *************

35. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 1648762-1648790, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggcttttcgggctgttccaca	Protospacer
**.***********.**************

36. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 1848275-1848303, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccggcctgttccaca	Protospacer
**.*************** **********

37. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 2216249-2216277, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccggcctgttccaca	Protospacer
**.*************** **********

38. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 2440241-2440269, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccggcctgttccaca	Protospacer
**.*************** **********

39. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 3921755-3921783, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
catgaacaggctttccggcctgttccaca	Protospacer
** *************** **********

40. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 4990862-4990890, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccggcctgttccaca	Protospacer
**.*************** **********

41. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 5476388-5476416, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
cagcaacaggctttccggcctgttccaca	Protospacer
*** ************** **********

42. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 7198670-7198698, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccggcctgttccaca	Protospacer
**.*************** **********

43. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to position: 7239027-7239055, mismatch: 2, identity: 0.931

caggaacaggctttccgggctgttccaca	CRISPR spacer
caagaacaggctttccggcctgttccaca	Protospacer
**.*************** **********

44. spacer 54.1|5833441|41|NC_019729|CRISPRCasFinder matches to position: 3753297-3753337, mismatch: 2, identity: 0.951

gcaagatgcctgttccacaaagatttaattttattgtggaa	CRISPR spacer
gcaagatgcctgttccacaaagagtaaattttattgtggaa	Protospacer
*********************** * ***************

45. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 1041207-1041230, mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacgccaacaccaacgcc	Protospacer
*********.**************

46. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 1041240-1041263, mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccgacgcc	Protospacer
******************.*****

47. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 5363291-5363314, mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

48. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 1027015-1027038, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaaccccaacaccaacccc	Protospacer
********* *********** **

49. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 1027027-1027050, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaaccccaacaccaacccc	Protospacer
********* *********** **

50. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 1041144-1041167, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccgacacc	Protospacer
******************.**.**

51. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 5015420-5015443, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccagcccc	Protospacer
*******************.* **

52. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 5015426-5015449, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aactccaacaccaacaccaacacc	Protospacer
*** *****************.**

53. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 5015432-5015455, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaactccaacaccaacacc	Protospacer
********* ***********.**

54. spacer 64.1|6967260|24|NC_019729|CRT matches to position: 5357338-5357361, mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aactccaactccaacaccaacgcc	Protospacer
*** ***** **************

55. spacer 64.4|6967464|18|NC_019729|CRT matches to position: 1746764-1746781, mismatch: 1, identity: 0.944

agcgccaacaccaacacc	CRISPR spacer
agcgccaactccaacacc	Protospacer
********* ********

56. spacer 64.4|6967464|18|NC_019729|CRT matches to position: 5015384-5015401, mismatch: 1, identity: 0.944

agcgccaacaccaacacc	CRISPR spacer
agccccaacaccaacacc	Protospacer
*** **************

57. spacer 64.4|6967464|18|NC_019729|CRT matches to position: 5015408-5015425, mismatch: 1, identity: 0.944

agcgccaacaccaacacc	CRISPR spacer
agccccaacaccaacacc	Protospacer
*** **************

58. spacer 64.4|6967464|18|NC_019729|CRT matches to position: 5015444-5015461, mismatch: 1, identity: 0.944

agcgccaacaccaacacc	CRISPR spacer
agcgccaacaccaactcc	Protospacer
*************** **

59. spacer 64.4|6967464|18|NC_019729|CRT matches to position: 6804746-6804763, mismatch: 1, identity: 0.944

agcgccaacaccaacacc	CRISPR spacer
agcgcctacaccaacacc	Protospacer
****** ***********

60. spacer 64.4|6967464|18|NC_019729|CRT matches to position: 6804782-6804799, mismatch: 1, identity: 0.944

agcgccaacaccaacacc	CRISPR spacer
agcgcctacaccaacacc	Protospacer
****** ***********

61. spacer 67.3|7426112|20|NC_019729|CRISPRCasFinder matches to position: 911438-911457, mismatch: 2, identity: 0.9

cagcccccgtgaggttggct	CRISPR spacer
cagctcccgtcaggttggct	Protospacer
****.***** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	2596-2619	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	849309-849332	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295251-1295274	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295257-1295280	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295263-1295286	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37010-37033	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37016-37039	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78543-78566	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78549-78572	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19480-19503	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19486-19509	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19492-19515	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19498-19521	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204779-204802	1	0.958
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	MN047793	Xanthomonas phage Xoo-sp13, complete genome	136825-136848	1	0.958
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	MN047793	Xanthomonas phage Xoo-sp13, complete genome	136825-136848	1	0.958
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	849303-849326	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295245-1295268	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204773-204796	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	176077-176100	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_028998	Phormidium phage MIS-PhV1B, complete genome	18368-18391	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	979909-979932	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	MN694040	Marine virus AFVG_250M411, complete genome	33674-33697	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	KU160661	Arthrobacter phage Pumancara, complete genome	39319-39342	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	67319-67342	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_030925	Bacillus phage Shbh1, complete genome	126126-126149	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	DQ535032	Lactococcus lactis phage KSY1, complete genome	47372-47395	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_009817	Lactococcus phage KSY1, complete genome	47372-47395	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP037434	Lactobacillus plantarum strain EM plasmid pEM5, complete sequence	51096-51119	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP035132	Lactobacillus plantarum strain SRCM103311 plasmid unnamed1	43138-43161	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP035115	Lactobacillus plantarum strain SRCM103295 plasmid unnamed2	3137-3160	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP035115	Lactobacillus plantarum strain SRCM103295 plasmid unnamed2	64077-64100	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP020097	Lactobacillus plantarum strain K25 plasmid unnamed4, complete sequence	43804-43827	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP035567	Lactobacillus plantarum strain SRCM103300 plasmid unnamed1	34869-34892	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP046663	Lactobacillus plantarum strain 83-18 plasmid p83-18.3, complete sequence	29759-29782	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1748542-1748565	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	111183-111206	2	0.917
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	248092-248115	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP037434	Lactobacillus plantarum strain EM plasmid pEM5, complete sequence	51096-51119	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP035132	Lactobacillus plantarum strain SRCM103311 plasmid unnamed1	43138-43161	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP035115	Lactobacillus plantarum strain SRCM103295 plasmid unnamed2	3137-3160	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP035115	Lactobacillus plantarum strain SRCM103295 plasmid unnamed2	64077-64100	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP020097	Lactobacillus plantarum strain K25 plasmid unnamed4, complete sequence	43804-43827	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP035567	Lactobacillus plantarum strain SRCM103300 plasmid unnamed1	34869-34892	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP046663	Lactobacillus plantarum strain 83-18 plasmid p83-18.3, complete sequence	29759-29782	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1748542-1748565	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	111183-111206	2	0.917
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	248092-248115	2	0.917
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	2578-2601	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	2602-2625	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	2705-2728	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	849315-849338	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37004-37027	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78537-78560	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	170203-170226	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	821729-821752	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	821729-821752	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_010363	Lactococcus phage asccphi28, complete genome	13559-13582	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	187214-187237	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	879901-879924	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1019244-1019267	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP011457	Anabaena sp. WA102 plasmid, complete sequence	76049-76072	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	95717-95740	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	MN047793	Xanthomonas phage Xoo-sp13, complete genome	136825-136848	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	AP018399	Xanthomonas phage XacN1 DNA, complete genome	127624-127647	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_010811	Ralstonia phage RSL1, complete genome	36487-36510	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	AP014368	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C87, * SEQUENCING IN PROGRESS *	11185-11208	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	AB366653	Ralstonia phage RSL1 DNA, complete genome	36487-36510	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	MT276994	Aeromonas phage AhyVDH1, complete genome	9015-9038	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	241461-241484	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1513486-1513509	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	20480-20503	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	MG592515	Vibrio phage 1.144.O._10N.286.45.B3, partial genome	1306-1329	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	JX976549	Acinetobacter phage IME-AB2, complete genome	15259-15282	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	AP014367	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, * SEQUENCING IN PROGRESS *	21330-21353	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1042555-1042578	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	670410-670433	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1043554-1043577	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	170203-170226	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	283415-283438	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204773-204796	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204779-204802	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	245217-245240	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	4304-4327	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	5283-5306	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	849309-849332	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	95687-95710	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295251-1295274	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295257-1295280	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295263-1295286	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37010-37033	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37016-37039	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP033025	Agrobacterium fabrum strain 1D132 plasmid pAt1D132b, complete sequence	106703-106726	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP013153	Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence	21338-21361	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78543-78566	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78549-78572	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	MT310869	Microbacterium phage Truong, complete genome	49094-49117	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	MN693048	Marine virus AFVG_25M535, complete genome	31396-31419	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	MH412654	Synechococcus phage S-T4, complete genome	31602-31625	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	NC_048761	Microbacterium phage Akoni, complete genome	49092-49115	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19480-19503	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19486-19509	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19492-19515	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19498-19521	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	MG592560	Vibrio phage 1.190.O._10N.286.51.F12, partial genome	3999-4022	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	AP018399	Xanthomonas phage XacN1 DNA, complete genome	127624-127647	3	0.875
NC_019729_64	64.2\|6967326\|24\|NC_019729\|CRT	6967326-6967349	24	AP018399	Xanthomonas phage XacN1 DNA, complete genome	129825-129848	3	0.875
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	469704-469733	3	0.9
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	241461-241484	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1513486-1513509	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	20480-20503	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	MG592515	Vibrio phage 1.144.O._10N.286.45.B3, partial genome	1306-1329	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	JX976549	Acinetobacter phage IME-AB2, complete genome	15259-15282	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	AP014367	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, * SEQUENCING IN PROGRESS *	21330-21353	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1042555-1042578	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	670410-670433	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1043554-1043577	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	170203-170226	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	283415-283438	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204773-204796	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204779-204802	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP022424	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence	245217-245240	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	4304-4327	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	5283-5306	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	849309-849332	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	95687-95710	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295251-1295274	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295257-1295280	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295263-1295286	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37010-37033	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37016-37039	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP033025	Agrobacterium fabrum strain 1D132 plasmid pAt1D132b, complete sequence	106703-106726	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP013153	Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence	21338-21361	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78543-78566	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78549-78572	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	MT310869	Microbacterium phage Truong, complete genome	49094-49117	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	MN693048	Marine virus AFVG_25M535, complete genome	31396-31419	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	MH412654	Synechococcus phage S-T4, complete genome	31602-31625	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	NC_048761	Microbacterium phage Akoni, complete genome	49092-49115	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19480-19503	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19486-19509	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19492-19515	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19498-19521	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	MG592560	Vibrio phage 1.190.O._10N.286.51.F12, partial genome	3999-4022	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	AP018399	Xanthomonas phage XacN1 DNA, complete genome	127624-127647	3	0.875
NC_019729_64	64.6\|6967608\|24\|NC_019729\|CRT	6967608-6967631	24	AP018399	Xanthomonas phage XacN1 DNA, complete genome	129825-129848	3	0.875
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	37022-37045	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	78555-78578	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	KF437907	Phormidium phage MIS-PhV1A, complete genome	19474-19497	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_010849	Streptomyces sp. 44030 plasmid pRL1, complete sequence	31606-31629	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NC_010849	Streptomyces sp. 44030 plasmid pRL1, complete sequence	1131-1154	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	MH319749	Marine virus AG-345-F15 Ga0172271_11 genomic sequence	85030-85053	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	MN693269	Marine virus AFVG_25M487, complete genome	41033-41056	4	0.833
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	110338-110361	4	0.833
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NC_007412	Trichormus variabilis ATCC 29413 plasmid C, complete sequence	127874-127898	5	0.8
NC_019729_13	13.3\|1072038\|25\|NC_019729\|CRT	1072038-1072062	25	NZ_CP047244	Trichormus variabilis 0441 plasmid unnamed2, complete sequence	111650-111674	5	0.8
NC_019729_63	63.1\|6943877\|28\|NC_019729\|CRISPRCasFinder	6943877-6943904	28	NZ_CP011383	Calothrix sp. 336/3 plasmid unnamed1	22623-22650	5	0.821
NC_019729_64	64.1\|6967260\|24\|NC_019729\|CRT	6967260-6967283	24	MN830252	Lactobacillus phage JNU_P1, complete genome	24093-24116	5	0.792
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP021367	Acidovorax carolinensis strain P4 plasmid pACP4.1, complete sequence	41047-41076	5	0.833
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP021363	Acidovorax carolinensis strain P3 plasmid pACP3.1, complete sequence	27098-27127	5	0.833
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_018832	Providencia phage Redjac, complete genome	53573-53602	5	0.833
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP021360	Acidovorax carolinensis strain NA2 plasmid pACNA2.1, complete sequence	37102-37131	5	0.833
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP011543	Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence	17501-17530	5	0.833
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_009806	Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence	1630-1659	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP028383	Escherichia coli strain RM10466 plasmid pRM10466-2, complete sequence	2766-2795	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP012498	Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence	122343-122372	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP012501	Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence	226330-226359	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	KR827394	Uncultured bacterium plasmid pKAZ5, complete sequence	221713-221742	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	CP027641	Escherichia coli strain 2014C-4705 plasmid unnamed, complete sequence	119777-119806	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	CP027580	Escherichia coli strain 2013C-4282 plasmid unnamed1	20803-20832	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	CP027581	Escherichia coli strain 2013C-4282 plasmid unnamed2, complete sequence	107233-107262	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	CP027674	Escherichia coli strain 2014C-3003 plasmid unnamed2, complete sequence	96121-96150	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP028610	Escherichia coli strain 142 plasmid pTA142-3, complete sequence	52009-52038	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP027375	Escherichia coli strain 05-3629 plasmid unnamed2, complete sequence	113059-113088	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP012500	Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence	54569-54598	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP042297	Escherichia coli strain RM9088 plasmid p2RM9088, complete sequence	56213-56242	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP027458	Escherichia coli strain 88-3493 plasmid unnamed, complete sequence	93618-93647	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP027367	Escherichia coli strain 89-3156 plasmid unnamed, complete sequence	71222-71251	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP012499	Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence	154293-154322	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP026489	Streptomyces sp. 604F plasmid unnamed, complete sequence	151535-151564	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP027239	Dietzia sp. oral taxon 368 strain W5195 plasmid unnamed1, complete sequence	131183-131212	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	170203-170232	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP029339	Streptomyces sp. SM17 plasmid pSM17A, complete sequence	36900-36929	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	AP018399	Xanthomonas phage XacN1 DNA, complete genome	129837-129866	6	0.8
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_010311	Streptomyces sp. HK1 plasmid pSHK1, complete sequence	147650-147679	6	0.8
NC_019729_3	3.1\|377940\|36\|NC_019729\|CRISPRCasFinder	377940-377975	36	MK250016	Prevotella phage Lak-A1, complete genome	263932-263967	7	0.806
NC_019729_3	3.1\|377940\|36\|NC_019729\|CRISPRCasFinder	377940-377975	36	MK250019	Prevotella phage Lak-A2, complete genome	185066-185101	7	0.806
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP018798	Lactobacillus parabuchneri strain FAM21731 plasmid pFAM21731.2, complete sequence	54979-55011	7	0.788
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP040375	Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed1, complete sequence	24005-24037	7	0.788
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP028231	Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence	48179-48211	7	0.788
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP050807	Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP511, complete sequence	17050-17082	7	0.788
NC_019729_46	46.12\|4978698\|32\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4978698-4978729	32	NZ_CP016451	Sinorhizobium sp. RAC02 plasmid pBSY16_2, complete sequence	25066-25097	7	0.781
NC_019729_46	46.91\|4984593\|35\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4984593-4984627	35	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	30963-30997	7	0.8
NC_019729_46	46.91\|4984593\|35\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4984593-4984627	35	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	161097-161131	7	0.8
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	137678-137706	7	0.759
NC_019729_58	58.21\|6127187\|37\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6127187-6127223	37	NC_009930	Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence	143116-143152	7	0.811
NC_019729_63	63.2\|6943931\|28\|NC_019729\|CRISPRCasFinder	6943931-6943958	28	MN693656	Marine virus AFVG_250M403, complete genome	47043-47070	7	0.75
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1295263-1295292	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	MN047793	Xanthomonas phage Xoo-sp13, complete genome	269025-269054	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP034431	Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence	22756-22785	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	615560-615589	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	615569-615598	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	508384-508413	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP024249	Escherichia coli O182:H21 strain D181 plasmid unnamed1, complete sequence	31323-31352	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	637756-637785	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_017627	Escherichia coli 042 plasmid pAA, complete sequence	62683-62712	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	111722-111751	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1305152-1305181	7	0.767
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_019037	Escherichia coli plasmid pChi7122-2, complete sequence	16710-16739	7	0.767
NC_019729_5	5.1\|533418\|33\|NC_019729\|CRISPRCasFinder	533418-533450	33	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	105582-105614	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	48058-48090	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP048005	Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence	36905-36937	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP028237	Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence	41053-41085	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP024414	Lactobacillus plantarum strain ATCC 8014 plasmid pLP49, complete sequence	9321-9353	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP021459	Lactobacillus brevis strain ZLB004 plasmid p3, complete sequence	10027-10059	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP021461	Lactobacillus brevis strain ZLB004 plasmid p5, complete sequence	40417-40449	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NC_015603	Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence	17288-17320	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP017264	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.23, complete sequence	25418-25450	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP035157	Lactobacillus plantarum strain SRCM103362 plasmid unnamed1	26508-26540	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP017410	Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence	17106-17138	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NC_013200	Lactobacillus rhamnosus Lc 705 plasmid pLC1, complete sequence	26353-26385	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP040377	Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed3, complete sequence	8031-8063	8	0.758
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP028225	Lactobacillus plantarum strain SRCM101105 plasmid unnamed3, complete sequence	16023-16055	8	0.758
NC_019729_46	46.13\|4978767\|33\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4978767-4978799	33	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	220468-220500	8	0.758
NC_019729_53	53.1\|5824410\|29\|NC_019729\|CRISPRCasFinder	5824410-5824438	29	NZ_CP051549	Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1	95505-95533	8	0.724
NC_019729_58	58.24\|6127405\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6127405-6127438	34	CP002963	Emticicia oligotrophica DSM 17448 plasmid pEMTOL02, complete sequence	32337-32370	8	0.765
NC_019729_62	62.4\|6577966\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	6577966-6577998	33	NC_011775	Bacillus cereus G9842 plasmid pG9842_209, complete sequence	78458-78490	8	0.758
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	89483-89512	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	KT898134	Aeromonas phage phiARM81mr, complete genome	56161-56190	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	36686-36715	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP016381	Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence	24470-24499	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	258279-258308	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	MK448982	Streptococcus phage Javan554, complete genome	36147-36176	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP015268	Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence	44267-44296	8	0.733
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	MH593832	Phage sp. isolate ctcj9, complete genome	29649-29678	8	0.733
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP037436	Lactobacillus plantarum strain EM plasmid pEM7, complete sequence	12222-12254	9	0.727
NC_019729_15	15.1\|1286051\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	1286051-1286083	33	NZ_CP037436	Lactobacillus plantarum strain EM plasmid pEM7, complete sequence	23612-23644	9	0.727
NC_019729_19	19.1\|1581027\|31\|NC_019729\|CRISPRCasFinder	1581027-1581057	31	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	113031-113061	9	0.71
NC_019729_19	19.1\|1581027\|31\|NC_019729\|CRISPRCasFinder	1581027-1581057	31	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	118474-118504	9	0.71
NC_019729_44	44.7\|4873922\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4873922-4873954	33	MN693987	Marine virus AFVG_250M285, complete genome	5206-5238	9	0.727
NC_019729_44	44.12\|4874276\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4874276-4874309	34	NZ_CP023822	Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence	36367-36400	9	0.735
NC_019729_44	44.41\|4876390\|34\|NC_019729\|CRISPRCasFinder,CRT	4876390-4876423	34	MK291442	Paracoccus phage vB_PkoS_Pkon1, complete genome	44552-44585	9	0.735
NC_019729_46	46.8\|4978411\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4978411-4978444	34	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	6404-6437	9	0.735
NC_019729_46	46.8\|4978411\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4978411-4978444	34	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	273201-273234	9	0.735
NC_019729_58	58.6\|6126094\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6126094-6126127	34	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1536852-1536885	9	0.735
NC_019729_58	58.6\|6126094\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6126094-6126127	34	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	322407-322440	9	0.735
NC_019729_58	58.6\|6126094\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6126094-6126127	34	NZ_CP007231	Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence	6391-6424	9	0.735
NC_019729_58	58.6\|6126094\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6126094-6126127	34	MN694101	Marine virus AFVG_250M707, complete genome	15533-15566	9	0.735
NC_019729_58	58.24\|6127405\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6127405-6127438	34	AF440571	Sulfolobus islandicus filamentous virus, partial genome	33476-33509	9	0.735
NC_019729_58	58.26\|6127551\|36\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6127551-6127586	36	MN693849	Marine virus AFVG_250M1030, complete genome	16467-16502	9	0.75
NC_019729_58	58.53\|6129544\|37\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6129544-6129580	37	MN694774	Marine virus AFVG_250M941, complete genome	15009-15045	9	0.757
NC_019729_62	62.4\|6577966\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	6577966-6577998	33	NC_017483	Lactococcus lactis subsp. lactis CV56 plasmid pCV56A, complete sequence	32548-32580	9	0.727
NC_019729_62	62.4\|6577966\|33\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	6577966-6577998	33	NC_019308	Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence	16196-16228	9	0.727
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	MN813693	Mycobacterium phage Imvubu, complete genome	41069-41098	9	0.7
NC_019729_3	3.1\|377940\|36\|NC_019729\|CRISPRCasFinder	377940-377975	36	MK250029	Prevotella phage Lak-C1, complete genome	227759-227794	10	0.722
NC_019729_37	37.1\|4153115\|33\|NC_019729\|CRISPRCasFinder	4153115-4153147	33	NC_049930	Enterococcus phage vB_EfaP_Zip, complete genome	13109-13141	10	0.697
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	KY883658	Vibrio phage JSF27, complete genome	19371-19404	10	0.706
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	KY883657	Vibrio phage JSF23, complete genome	46923-46956	10	0.706
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	MT066160	Vibrio phage Saratov-12, complete genome	11589-11622	10	0.706
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	NC_015158	Vibrio phage ICP2, complete genome	18162-18195	10	0.706
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	KM224878	Vibrio phage ICP2_2011_A, complete genome	18160-18193	10	0.706
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	HQ641346	Vibrio phage ICP2_2006_A, complete genome	18135-18168	10	0.706
NC_019729_44	44.28\|4875437\|34\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4875437-4875470	34	MT767883	Vibrio phage Saratov-15, complete genome	17899-17932	10	0.706
NC_019729_62	62.17\|6578914\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6578914-6578947	34	NZ_CP007231	Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence	16996-17029	10	0.706
NC_019729_62	62.17\|6578914\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	6578914-6578947	34	NZ_CP028488	Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence	44022-44055	10	0.706
NC_019729_64	64.3\|6967392\|30\|NC_019729\|CRT	6967392-6967421	30	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	204767-204796	10	0.667
NC_019729_3	3.2\|378006\|36\|NC_019729\|CRISPRCasFinder	378006-378041	36	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	304791-304826	11	0.694
NC_019729_5	5.1\|533418\|33\|NC_019729\|CRISPRCasFinder	533418-533450	33	NZ_CP035463	Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-5, complete sequence	5564-5596	11	0.667
NC_019729_32	32.1\|3371418\|32\|NC_019729\|CRISPRCasFinder	3371418-3371449	32	MN694547	Marine virus AFVG_250M388, complete genome	1882-1913	11	0.656
NC_019729_40	40.5\|4644999\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4644999-4645032	34	MH976516	Corynebacterium phage PeteyPab, complete genome	40255-40288	11	0.676
NC_019729_40	40.5\|4644999\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4644999-4645032	34	MG198778	Corynebacterium phage PotatoChip, complete genome	40257-40290	11	0.676
NC_019729_40	40.5\|4644999\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4644999-4645032	34	MG198780	Corynebacterium phage Zion, complete genome	40255-40288	11	0.676
NC_019729_40	40.5\|4644999\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4644999-4645032	34	MH926056	Corynebacterium phage Cruella, complete genome	39410-39443	11	0.676
NC_019729_40	40.5\|4644999\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4644999-4645032	34	MG198776	Corynebacterium phage C3PO, complete genome	39410-39443	11	0.676
NC_019729_40	40.5\|4644999\|34\|NC_019729\|CRISPRCasFinder,CRT,PILER-CR	4644999-4645032	34	MK977700	Corynebacterium phage Stickynote, complete genome	39677-39710	11	0.676
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581091	Vibrio phage Cla, complete genome	44110-44142	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581096	Vibrio phage pVa-5, complete genome	44111-44143	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	MK672804	Vibrio phage Va_178/90_p41, complete genome	52481-52513	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658673	Vibrio phage H2 PGK-2017, complete genome	37033-37065	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581093	Vibrio phage Pel, complete genome	44111-44143	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581097	Vibrio phage pVa-6, complete genome	44111-44143	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658677	Vibrio phage P3, complete genome	44126-44158	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581098	Vibrio phage VaK, complete genome	44100-44132	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658674	Vibrio phage H8, complete genome	37041-37073	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658676	Vibrio phage P2, complete genome	37033-37065	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581090	Vibrio phage Her, complete genome	44110-44142	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658678	Vibrio phage pVa-3, complete genome	45228-45260	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658679	Vibrio phage pVa-4, complete genome	45179-45211	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	MK672800	Vibrio phage Va_90-11-287_p41_Ba35, complete genome	27156-27188	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	MK672799	Vibrio phage Va_90-11-287_p41, complete genome	27156-27188	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581092	Vibrio phage Len, complete genome	44110-44142	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581094	Vibrio phage pVa-2, complete genome	44110-44142	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	MK672803	Vibrio phage Va_91-7-154_p41, complete genome	8601-8633	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658680	Vibrio phage pVa-8, complete genome	44111-44143	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KY658675	Vibrio phage H20, complete genome	44108-44140	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581095	Vibrio phage pVa-1, complete genome	44111-44143	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581099	Vibrio phage Strym, complete genome	44110-44142	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	MK672801	Vibrio phage Va_90-11-287_p41_T265, complete genome	27156-27188	11	0.667
NC_019729_62	62.7\|6578193\|33\|NC_019729\|CRISPRCasFinder,CRT	6578193-6578225	33	KX581100	Vibrio phage pVa-7, complete genome	45152-45184	11	0.667
NC_019729_7	7.10\|604111\|35\|NC_019729\|CRISPRCasFinder,CRT	604111-604145	35	NZ_CP014068	Enterococcus gallinarum strain FDAARGOS_163 plasmid unnamed, complete sequence	55976-56010	12	0.657
NC_019729_44	44.3\|4873622\|37\|NC_019729\|PILER-CR,CRISPRCasFinder,CRT	4873622-4873658	37	NC_010579	Xylella fastidiosa M23 plasmid pXFAS01, complete sequence	9552-9588	12	0.676

1. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacacccacgcc	Protospacer
****************** *****

2. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

3. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

4. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

5. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

6. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

7. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

8. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

9. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

10. spacer 64.1|6967260|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

11. spacer 64.1|6967260|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

12. spacer 64.1|6967260|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

13. spacer 64.1|6967260|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

14. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 1, identity: 0.958

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
*********************.**

15. spacer 64.2|6967326|24|NC_019729|CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 1, identity: 0.958

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacaccgacaccaacacc	Protospacer
*************.**********

16. spacer 64.6|6967608|24|NC_019729|CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 1, identity: 0.958

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacaccgacaccaacacc	Protospacer
*************.**********

17. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccagcgct	Protospacer
*******************.***.

18. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacagc	Protospacer
*********************. *

19. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
cacaccaacaccaacaccaacacc	Protospacer
 ********************.**

20. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
gacaccaacaccaacactaacgcc	Protospacer
.****************.******

21. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_028998 (Phormidium phage MIS-PhV1B, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaacatc	Protospacer
*********************..*

22. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
accaccaacaccaacaccaactcc	Protospacer
* ******************* **

23. spacer 64.1|6967260|24|NC_019729|CRT matches to MN694040 (Marine virus AFVG_250M411, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacgcctacaccaacgcc	Protospacer
*********.** ***********

24. spacer 64.1|6967260|24|NC_019729|CRT matches to KU160661 (Arthrobacter phage Pumancara, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaccaccaaggcc	Protospacer
************* ****** ***

25. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
accaccaacaccaacaccaactcc	Protospacer
* ******************* **

26. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacgccaacaccagcaccaacgcc	Protospacer
***.*********.**********

27. spacer 64.1|6967260|24|NC_019729|CRT matches to DQ535032 (Lactococcus lactis phage KSY1, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaactccaacaccaactcc	Protospacer
********* *********** **

28. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_009817 (Lactococcus phage KSY1, complete genome) position: , mismatch: 2, identity: 0.917

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaactccaacaccaactcc	Protospacer
********* *********** **

29. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP037434 (Lactobacillus plantarum strain EM plasmid pEM5, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

30. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP035132 (Lactobacillus plantarum strain SRCM103311 plasmid unnamed1) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

31. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

32. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

33. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP020097 (Lactobacillus plantarum strain K25 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

34. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP035567 (Lactobacillus plantarum strain SRCM103300 plasmid unnamed1) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

35. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP046663 (Lactobacillus plantarum strain 83-18 plasmid p83-18.3, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

36. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
gacacccacaccggcaccagcacc	Protospacer
****** ************.****

37. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacacgagcaccaacacc	Protospacer
*********** .***********

38. spacer 64.2|6967326|24|NC_019729|CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccgacaccggcaccgacacc	Protospacer
******.***********.*****

39. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP037434 (Lactobacillus plantarum strain EM plasmid pEM5, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

40. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP035132 (Lactobacillus plantarum strain SRCM103311 plasmid unnamed1) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

41. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

42. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

43. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP020097 (Lactobacillus plantarum strain K25 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

44. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP035567 (Lactobacillus plantarum strain SRCM103300 plasmid unnamed1) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

45. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP046663 (Lactobacillus plantarum strain 83-18 plasmid p83-18.3, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccggcaccaacacc	Protospacer
.*** *******************

46. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
gacacccacaccggcaccagcacc	Protospacer
****** ************.****

47. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacacgagcaccaacacc	Protospacer
*********** .***********

48. spacer 64.6|6967608|24|NC_019729|CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 2, identity: 0.917

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccgacaccggcaccgacacc	Protospacer
******.***********.*****

49. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
cacgccaacaccaacacccacgcc	Protospacer
 **.************** *****

50. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
cacgccaacaccaacaccaacacc	Protospacer
 **.*****************.**

51. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
cacgccaacaccaacacccacgcc	Protospacer
 **.************** *****

52. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
ctcaccaacaccaacaccaacacc	Protospacer
  *******************.**

53. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaaatca	Protospacer
********************  *

54. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccaaatca	Protospacer
********************  *

55. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
gacaccaacaccaacaccaacaca	Protospacer
.********************.*

56. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaaaaccaacgtt	Protospacer
************** *******..

57. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaaaaccaacgtt	Protospacer
************** *******..

58. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_010363 (Lactococcus phage asccphi28, complete genome) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
tgcaccaacaccaacaccaacacc	Protospacer
 .*******************.**

59. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
tgcaccaacaccaacaccagcgcc	Protospacer
 .*****************.****

60. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaaaaccaacgtt	Protospacer
************** *******..

61. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
gacaccgacaccgacaccaacgcc	Protospacer
.*****.*****.***********

62. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP011457 (Anabaena sp. WA102 plasmid, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
accgacaacaccaacaccaacgcc	Protospacer
* *. *******************

63. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
cacaccaacgccaacacctacgcc	Protospacer
 ********.******** *****

64. spacer 64.1|6967260|24|NC_019729|CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
gacaccaacaccgacaccaacacc	Protospacer
.***********.********.**

65. spacer 64.1|6967260|24|NC_019729|CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
gacaccaacaccgacaccaacggc	Protospacer
.***********.********* *

66. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_010811 (Ralstonia phage RSL1, complete genome) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacagcaatgcg	Protospacer
**************** ***.**

67. spacer 64.1|6967260|24|NC_019729|CRT matches to AP014368 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C87, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaccaccaactac	Protospacer
************* *******  *

68. spacer 64.1|6967260|24|NC_019729|CRT matches to AB366653 (Ralstonia phage RSL1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacagcaatgcg	Protospacer
**************** ***.**

69. spacer 64.1|6967260|24|NC_019729|CRT matches to MT276994 (Aeromonas phage AhyVDH1, complete genome) position: , mismatch: 3, identity: 0.875

aacaccaacaccaacaccaacgcc	CRISPR spacer
actatcaacaccaacaccaacgcc	Protospacer
* .*.*******************

70. spacer 64.2|6967326|24|NC_019729|CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccatcaccggcaccaaaacc	Protospacer
.****** ************ ***

71. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
ctcaccaacaccggcaccatcacc	Protospacer
  ***************** ****

72. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacgccaacaccggcaccaacacg	Protospacer
 **.*******************

73. spacer 64.2|6967326|24|NC_019729|CRT matches to MG592515 (Vibrio phage 1.144.O._10N.286.45.B3, partial genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tgcaccaacacccgcaccaacacc	Protospacer
 .********** ***********

74. spacer 64.2|6967326|24|NC_019729|CRT matches to JX976549 (Acinetobacter phage IME-AB2, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tgcaccaacaccagcaccaacacc	Protospacer
 .**********.***********

75. spacer 64.2|6967326|24|NC_019729|CRT matches to AP014367 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tgcaccaacacctgcaccaacacc	Protospacer
 .********** ***********

76. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccgtctccaacacc	Protospacer
 ************ * ********

77. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacacgatcaccggcaccaacacg	Protospacer
***** * ***************

78. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccgtctccaacacc	Protospacer
 ************ * ********

79. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacaccaacaccaacaca	Protospacer
************..*********

80. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccggacccaacacc	Protospacer
 *************  ********

81. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
cacaccaacaccaacaccaacacc	Protospacer
 ***********..**********

82. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

83. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacgccgacaccaacacc	Protospacer
.********.***.**********

84. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacacctacaccggcaccaccacc	Protospacer
.***** ************ ****

85. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccggcaccggcacc	Protospacer
 *****************..****

86. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

87. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccagcaccggcaccagcacc	Protospacer
.******.***********.****

88. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

89. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

90. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

91. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

92. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

93. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP033025 (Agrobacterium fabrum strain 1D132 plasmid pAt1D132b, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacacgatcaccggcaccaacacg	Protospacer
***** * ***************

94. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP013153 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccagcaccaacacc	Protospacer
.*** *******.***********

95. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

96. spacer 64.2|6967326|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

97. spacer 64.2|6967326|24|NC_019729|CRT matches to MT310869 (Microbacterium phage Truong, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacatcaacaccggcaccaagacc	Protospacer
 ***.*************** ***

98. spacer 64.2|6967326|24|NC_019729|CRT matches to MN693048 (Marine virus AFVG_25M535, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccgacacccgcaccaacacc	Protospacer
.*****.***** ***********

99. spacer 64.2|6967326|24|NC_019729|CRT matches to MH412654 (Synechococcus phage S-T4, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
cactccaacacctgcaccaacacc	Protospacer
 ** ******** ***********

100. spacer 64.2|6967326|24|NC_019729|CRT matches to NC_048761 (Microbacterium phage Akoni, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacatcaacaccggcaccaagacc	Protospacer
 ***.*************** ***

101. spacer 64.2|6967326|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

102. spacer 64.2|6967326|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

103. spacer 64.2|6967326|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

104. spacer 64.2|6967326|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

105. spacer 64.2|6967326|24|NC_019729|CRT matches to MG592560 (Vibrio phage 1.190.O._10N.286.51.F12, partial genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
cacaccaacaccgccagcaacacc	Protospacer
 ************ ** *******

106. spacer 64.2|6967326|24|NC_019729|CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacaccgacaccaacggc	Protospacer
*************.*******. *

107. spacer 64.2|6967326|24|NC_019729|CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccttcaccaacacc	Protospacer
.***********  **********

108. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 3, identity: 0.9

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
aacgccgacaccagcggcaaccccaacacc	Protospacer
 *************** **** ********

109. spacer 64.6|6967608|24|NC_019729|CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccatcaccggcaccaaaacc	Protospacer
.****** ************ ***

110. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
ctcaccaacaccggcaccatcacc	Protospacer
  ***************** ****

111. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacgccaacaccggcaccaacacg	Protospacer
 **.*******************

112. spacer 64.6|6967608|24|NC_019729|CRT matches to MG592515 (Vibrio phage 1.144.O._10N.286.45.B3, partial genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tgcaccaacacccgcaccaacacc	Protospacer
 .********** ***********

113. spacer 64.6|6967608|24|NC_019729|CRT matches to JX976549 (Acinetobacter phage IME-AB2, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tgcaccaacaccagcaccaacacc	Protospacer
 .**********.***********

114. spacer 64.6|6967608|24|NC_019729|CRT matches to AP014367 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tgcaccaacacctgcaccaacacc	Protospacer
 .********** ***********

115. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccgtctccaacacc	Protospacer
 ************ * ********

116. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacacgatcaccggcaccaacacg	Protospacer
***** * ***************

117. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccgtctccaacacc	Protospacer
 ************ * ********

118. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacaccaacaccaacaca	Protospacer
************..*********

119. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccggacccaacacc	Protospacer
 *************  ********

120. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
cacaccaacaccaacaccaacacc	Protospacer
 ***********..**********

121. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

122. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP022424 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacgccgacaccaacacc	Protospacer
.********.***.**********

123. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacacctacaccggcaccaccacc	Protospacer
.***** ************ ****

124. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacaccaacaccggcaccggcacc	Protospacer
 *****************..****

125. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

126. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccagcaccggcaccagcacc	Protospacer
.******.***********.****

127. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

128. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

129. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

130. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

131. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

132. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP033025 (Agrobacterium fabrum strain 1D132 plasmid pAt1D132b, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacacgatcaccggcaccaacacg	Protospacer
***** * ***************

133. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP013153 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacagcaacaccagcaccaacacc	Protospacer
.*** *******.***********

134. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

135. spacer 64.6|6967608|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

136. spacer 64.6|6967608|24|NC_019729|CRT matches to MT310869 (Microbacterium phage Truong, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacatcaacaccggcaccaagacc	Protospacer
 ***.*************** ***

137. spacer 64.6|6967608|24|NC_019729|CRT matches to MN693048 (Marine virus AFVG_25M535, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccgacacccgcaccaacacc	Protospacer
.*****.***** ***********

138. spacer 64.6|6967608|24|NC_019729|CRT matches to MH412654 (Synechococcus phage S-T4, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
cactccaacacctgcaccaacacc	Protospacer
 ** ******** ***********

139. spacer 64.6|6967608|24|NC_019729|CRT matches to NC_048761 (Microbacterium phage Akoni, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
tacatcaacaccggcaccaagacc	Protospacer
 ***.*************** ***

140. spacer 64.6|6967608|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

141. spacer 64.6|6967608|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

142. spacer 64.6|6967608|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

143. spacer 64.6|6967608|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccaacaccaacacc	Protospacer
.***********..**********

144. spacer 64.6|6967608|24|NC_019729|CRT matches to MG592560 (Vibrio phage 1.190.O._10N.286.51.F12, partial genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
cacaccaacaccgccagcaacacc	Protospacer
 ************ ** *******

145. spacer 64.6|6967608|24|NC_019729|CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
gacaccaacaccgacaccaacggc	Protospacer
*************.*******. *

146. spacer 64.6|6967608|24|NC_019729|CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 3, identity: 0.875

gacaccaacaccggcaccaacacc	CRISPR spacer
aacaccaacaccttcaccaacacc	Protospacer
.***********  **********

147. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
tcaaccaacaccaacaccaacacc	Protospacer
   ******************.**

148. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
tcaaccaacaccaacaccaacacc	Protospacer
   ******************.**

149. spacer 64.1|6967260|24|NC_019729|CRT matches to KF437907 (Phormidium phage MIS-PhV1A, complete genome) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccagaatc	Protospacer
*******************. ..*

150. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_010849 (Streptomyces sp. 44030 plasmid pRL1, complete sequence) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
ctgaccagcaccaacaccaacgcc	Protospacer
   ****.****************

151. spacer 64.1|6967260|24|NC_019729|CRT matches to NC_010849 (Streptomyces sp. 44030 plasmid pRL1, complete sequence) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
ctgaccagcaccaacaccaacgcc	Protospacer
   ****.****************

152. spacer 64.1|6967260|24|NC_019729|CRT matches to MH319749 (Marine virus AG-345-F15 Ga0172271_11 genomic sequence) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
aataccaacaccaacaccaacagg	Protospacer
**.******************.

153. spacer 64.1|6967260|24|NC_019729|CRT matches to MN693269 (Marine virus AFVG_25M487, complete genome) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
gtgaccaacatcaacaccaacgcc	Protospacer
.  *******.*************

154. spacer 64.1|6967260|24|NC_019729|CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 4, identity: 0.833

aacaccaacaccaacaccaacgcc	CRISPR spacer
aacaccaacaccaacaccagcaag	Protospacer
*******************.*.

155. spacer 13.3|1072038|25|NC_019729|CRT matches to NC_007412 (Trichormus variabilis ATCC 29413 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.8

taattcttgtggggtgggcttctag	CRISPR spacer
actctcttgtgggatgggcttctag	Protospacer
   .*********.***********

156. spacer 13.3|1072038|25|NC_019729|CRT matches to NZ_CP047244 (Trichormus variabilis 0441 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.8

taattcttgtggggtgggcttctag	CRISPR spacer
actctcttgtgggatgggcttctag	Protospacer
   .*********.***********

157. spacer 63.1|6943877|28|NC_019729|CRISPRCasFinder matches to NZ_CP011383 (Calothrix sp. 336/3 plasmid unnamed1) position: , mismatch: 5, identity: 0.821

tggccagtttctgctttttgtttgagta	CRISPR spacer
gagctagttactgctttttgtttgagtg	Protospacer
 .**.**** *****************.

158. spacer 64.1|6967260|24|NC_019729|CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 5, identity: 0.792

aacaccaacaccaacaccaacgcc	CRISPR spacer
ttcaccaacaccaacaccaaccaa	Protospacer
  *******************

159. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP021367 (Acidovorax carolinensis strain P4 plasmid pACP4.1, complete sequence) position: , mismatch: 5, identity: 0.833

cacgccgacaccagcgccaacacc-aacacc	CRISPR spacer
aacaccgacaccagcgccaccaccgaacaa-	Protospacer
 **.*************** **** ****

160. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP021363 (Acidovorax carolinensis strain P3 plasmid pACP3.1, complete sequence) position: , mismatch: 5, identity: 0.833

cacgccgacaccagcgccaacacc-aacacc	CRISPR spacer
aacaccgacaccagcgccaccaccgaacaa-	Protospacer
 **.*************** **** ****

161. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_018832 (Providencia phage Redjac, complete genome) position: , mismatch: 5, identity: 0.833

cacgccgacaccagcgccaacaccaacacc-	CRISPR spacer
tacgcggacgccagcgccaacacc-tcaccg	Protospacer
.**** ***.**************  ****

162. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP021360 (Acidovorax carolinensis strain NA2 plasmid pACNA2.1, complete sequence) position: , mismatch: 5, identity: 0.833

cacgccgacaccagcgccaacacc-aacacc	CRISPR spacer
aacaccgacaccagcgccaccaccgaacaa-	Protospacer
 **.*************** **** ****

163. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP011543 (Corynebacterium mustelae strain DSM 45274 plasmid pCmus45274, complete sequence) position: , mismatch: 5, identity: 0.833

cacgccgacaccagcgccaacaccaacacc-	CRISPR spacer
cgcgccgacaccatccccaacacc-acacta	Protospacer
*.*********** * ******** ****.

164. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
agcgccgacaccagcgccgacaccagcgct	Protospacer
 .****************.******.*.*.

165. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP028383 (Escherichia coli strain RM10466 plasmid pRM10466-2, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

166. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP012498 (Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

167. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

168. spacer 64.3|6967392|30|NC_019729|CRT matches to KR827394 (Uncultured bacterium plasmid pKAZ5, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
cccgccgacaccagcgccatcatcaagtca	Protospacer
* ***************** **.***  *

169. spacer 64.3|6967392|30|NC_019729|CRT matches to CP027641 (Escherichia coli strain 2014C-4705 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

170. spacer 64.3|6967392|30|NC_019729|CRT matches to CP027580 (Escherichia coli strain 2013C-4282 plasmid unnamed1) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

171. spacer 64.3|6967392|30|NC_019729|CRT matches to CP027581 (Escherichia coli strain 2013C-4282 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

172. spacer 64.3|6967392|30|NC_019729|CRT matches to CP027674 (Escherichia coli strain 2014C-3003 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

173. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP028610 (Escherichia coli strain 142 plasmid pTA142-3, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

174. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP027375 (Escherichia coli strain 05-3629 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

175. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP012500 (Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

176. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP042297 (Escherichia coli strain RM9088 plasmid p2RM9088, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

177. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP027458 (Escherichia coli strain 88-3493 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

178. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP027367 (Escherichia coli strain 89-3156 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

179. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP012499 (Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctgacacctgcgccaccaccaacacc	Protospacer
  * *.****** ****** **********

180. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP026489 (Streptomyces sp. 604F plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
cagatcgcgaccagcgccaacaccaacccc	Protospacer
** ..**  ****************** **

181. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP027239 (Dietzia sp. oral taxon 368 strain W5195 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
cgcgccgccaccagcgccgacaccacccgc	Protospacer
*.***** **********.****** *  *

182. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
catccagacaccaacaccaacaccaacaca	Protospacer
**. * *******.*.*************

183. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP029339 (Streptomyces sp. SM17 plasmid pSM17A, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
cagatcgcgaccagcgccaacaccaacccc	Protospacer
** ..**  ****************** **

184. spacer 64.3|6967392|30|NC_019729|CRT matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

--cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
accaaacc--taccagcaccaacaccaacacc	Protospacer
  ** .**  .******.**************

185. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_010311 (Streptomyces sp. HK1 plasmid pSHK1, complete sequence) position: , mismatch: 6, identity: 0.8

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
cagatcgcgaccagcgccaacaccaacccc	Protospacer
** ..**  ****************** **

186. spacer 3.1|377940|36|NC_019729|CRISPRCasFinder matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.806

tatctaaatcaattaactgaattaggaatta-gcaga	CRISPR spacer
aattgaaatcaattaacagaattaagaattatacag-	Protospacer
 **. ************ ******.****** .***

187. spacer 3.1|377940|36|NC_019729|CRISPRCasFinder matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.806

tatctaaatcaattaactgaattaggaatta-gcaga	CRISPR spacer
aattgaaatcaattaacagaattaagaattatacag-	Protospacer
 **. ************ ******.****** .***

188. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018798 (Lactobacillus parabuchneri strain FAM21731 plasmid pFAM21731.2, complete sequence) position: , mismatch: 7, identity: 0.788

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--cgactgattaagttcctgggctgatcgcttttt	Protospacer
  *.**.  ****.******.*************.

189. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040375 (Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--cgactgattaagttcctgggctgatcgcttttt	Protospacer
  *.**.  ****.******.*************.

190. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028231 (Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--cgactgattaagttcctgggctgatcgcttttt	Protospacer
  *.**.  ****.******.*************.

191. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050807 (Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP511, complete sequence) position: , mismatch: 7, identity: 0.788

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--cgacttattaagttcctgagctgatagcttttt	Protospacer
  *.**.  ****.************* ******.

192. spacer 46.12|4978698|32|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016451 (Sinorhizobium sp. RAC02 plasmid pBSY16_2, complete sequence) position: , mismatch: 7, identity: 0.781

tctagggtgaaaagcttgaattcttccgagag	CRISPR spacer
gatgcggtgaaaagcttgaattctgacgagcg	Protospacer
  *. *******************  **** *

193. spacer 46.91|4984593|35|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 7, identity: 0.8

tatcgtccg---cgcggtcagcgaccgcacatcggcaa	CRISPR spacer
---cgaccggtatgcggtcagcgaccgcaattcggcaa	Protospacer
   ** ***   .****************  *******

194. spacer 46.91|4984593|35|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 7, identity: 0.8

tatcgtccg---cgcggtcagcgaccgcacatcggcaa	CRISPR spacer
---cgaccggtatgcggtcagcgaccgcaattcggcaa	Protospacer
   ** ***   .****************  *******

195. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 7, identity: 0.759

caggaacaggctttccgggctgttccaca	CRISPR spacer
aaggtacaggctttcggggctgtttgaac	Protospacer
 *** ********** ********. *

196. spacer 58.21|6127187|37|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NC_009930 (Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence) position: , mismatch: 7, identity: 0.811

gttgcttatcaacccattcaacaacagccaaaggttc--	CRISPR spacer
gttgattatcaacccattccacaacaa--gatggttccc	Protospacer
**** ************** ******.  .* *****

197. spacer 63.2|6943931|28|NC_019729|CRISPRCasFinder matches to MN693656 (Marine virus AFVG_250M403, complete genome) position: , mismatch: 7, identity: 0.75

cgtcctgtttctatcttttggtttaagg	CRISPR spacer
tgaagtgtttctatctcttggtttaata	Protospacer
.*   ***********.********* .

198. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
agcatcaacaccaacaccaacaccaacacc	Protospacer
 .*..*.******.*.**************

199. spacer 64.3|6967392|30|NC_019729|CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
atcacagacaccaacgccaacaccgacact	Protospacer
  *.* *******.**********.****.

200. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP034431 (Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gtcgacgaaaccagcgccaacaccaaaatg	Protospacer
  ** *** ***************** *.

201. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
ggcaacaacaccagcgccaccaccatcacc	Protospacer
 .*. *.************ ***** ****

202. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
ggcaacaacaccagcgccaccaccatcacc	Protospacer
 .*. *.************ ***** ****

203. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc-	CRISPR spacer
accgccgccaccagcgccagcacc-acgcaa	Protospacer
  ***** ***********.**** **.*

204. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP024249 (Escherichia coli O182:H21 strain D181 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctaacacctgcgccaccaccaacacc	Protospacer
  * *..***** ****** **********

205. spacer 64.3|6967392|30|NC_019729|CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
ggcaacaacaccagcgccaccaccatcacc	Protospacer
 .*. *.************ ***** ****

206. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_017627 (Escherichia coli 042 plasmid pAA, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctaacacctgcgccaccaccaacacc	Protospacer
  * *..***** ****** **********

207. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
tccagcgccaccagcgccagcaccaacagc	Protospacer
. *. ** ***********.******** *

208. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc-	CRISPR spacer
accgccgccaccagcgccagcacc-acgcaa	Protospacer
  ***** ***********.**** **.*

209. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_019037 (Escherichia coli plasmid pChi7122-2, complete sequence) position: , mismatch: 7, identity: 0.767

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
acctctaacacctgcgccaccaccaacacc	Protospacer
  * *..***** ****** **********

210. spacer 5.1|533418|33|NC_019729|CRISPRCasFinder matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.758

tttgttgcattaatttcagcaacaggcaagatg	CRISPR spacer
aatgttgcagtaattccagcaacaggctatagc	Protospacer
  ******* *****.*********** * *

211. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052067 (Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

212. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048005 (Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

213. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028237 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

214. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024414 (Lactobacillus plantarum strain ATCC 8014 plasmid pLP49, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

215. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021459 (Lactobacillus brevis strain ZLB004 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

216. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021461 (Lactobacillus brevis strain ZLB004 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggactgattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

217. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_015603 (Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

218. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017264 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.23, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

219. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035157 (Lactobacillus plantarum strain SRCM103362 plasmid unnamed1) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

220. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017410 (Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

221. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_013200 (Lactobacillus rhamnosus Lc 705 plasmid pLC1, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

222. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040377 (Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

223. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028225 (Lactobacillus plantarum strain SRCM101105 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

tccaacc--ttaaattcctgagctgatcgcttttc	CRISPR spacer
--ggacttattaagttcctgagctgatagcttttt	Protospacer
   .**.  ****.************* ******.

224. spacer 46.13|4978767|33|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 8, identity: 0.758

tatcactccgggcccctcacaccggagatggtg	CRISPR spacer
gatgcgctcgggcgcctcacaccggagctggtg	Protospacer
 **   ..***** ************* *****

225. spacer 53.1|5824410|29|NC_019729|CRISPRCasFinder matches to NZ_CP051549 (Phytobacter diazotrophicus strain UAEU22 plasmid unnamed1) position: , mismatch: 8, identity: 0.724

caggaacaggctttccgggctgttccaca	CRISPR spacer
ggggaacagtctttccgggatgttcatgc	Protospacer
 .******* ********* *****

226. spacer 58.24|6127405|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to CP002963 (Emticicia oligotrophica DSM 17448 plasmid pEMTOL02, complete sequence) position: , mismatch: 8, identity: 0.765

ctaattgtccaaaagttggattaagaactgccgc-	CRISPR spacer
ctaattgtgcaaaagttgtattaa-aattgttaaa	Protospacer
******** ********* ***** **.**...

227. spacer 62.4|6577966|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 8, identity: 0.758

caatatcatttttagaaatattggaaatatttt	CRISPR spacer
tattatcattgttataaatattggaaatagagg	Protospacer
.* ******* *** **************

228. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gtggtgcgcaccagcgccgacaccaacacc	Protospacer
   *.  .**********.***********

229. spacer 64.3|6967392|30|NC_019729|CRT matches to KT898134 (Aeromonas phage phiARM81mr, complete genome) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gccgccgacaccatcgccaaccccaagcga	Protospacer
  *********** ******* ****

230. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gccgccgacacccgcgccaacgccagaccg	Protospacer
  ********** ********.***.  *

231. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP016381 (Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gtggccgacaccagagccaagaccaaatgc	Protospacer
   *********** ***** *****   *

232. spacer 64.3|6967392|30|NC_019729|CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
cacgccgccaccagcgccaaccggtccgct	Protospacer
******* *************     *.*.

233. spacer 64.3|6967392|30|NC_019729|CRT matches to MK448982 (Streptococcus phage Javan554, complete genome) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
ccaaccgacaccagctccaagaccaactgt	Protospacer
*  .*********** **** ******  .

234. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP015268 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gccgccgacacccgcgccaacgccagaccg	Protospacer
  ********** ********.***.  *

235. spacer 64.3|6967392|30|NC_019729|CRT matches to MH593832 (Phage sp. isolate ctcj9, complete genome) position: , mismatch: 8, identity: 0.733

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gacgccaacaccaccgccaacaccggaaat	Protospacer
 *****.****** **********.. * .

236. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037436 (Lactobacillus plantarum strain EM plasmid pEM7, complete sequence) position: , mismatch: 9, identity: 0.727

tccaaccttaaattcctgagctgatcgcttttc	CRISPR spacer
tgacttattaagttcctgggctgatcgcttttt	Protospacer
*    . ****.******.*************.

237. spacer 15.1|1286051|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037436 (Lactobacillus plantarum strain EM plasmid pEM7, complete sequence) position: , mismatch: 9, identity: 0.727

tccaaccttaaattcctgagctgatcgcttttc	CRISPR spacer
tgacttattaagttcctgggctgatcgcttttt	Protospacer
*    . ****.******.*************.

238. spacer 19.1|1581027|31|NC_019729|CRISPRCasFinder matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 9, identity: 0.71

caaatcacctgtttatgccccaccaccagcg	CRISPR spacer
tggttgcgctgttcacgccccaccaccagcg	Protospacer
... *   *****.*.***************

239. spacer 19.1|1581027|31|NC_019729|CRISPRCasFinder matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 9, identity: 0.71

caaatcacctgtttatgccccaccaccagcg	CRISPR spacer
tggttgcgctgttcacgccccaccaccagcg	Protospacer
... *   *****.*.***************

240. spacer 44.7|4873922|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to MN693987 (Marine virus AFVG_250M285, complete genome) position: , mismatch: 9, identity: 0.727

aactccctttcctcgtcatcgtcgggcggttcc	CRISPR spacer
ttggccctttcctcgtcatcttcaggcggaggc	Protospacer
    **************** **.*****   *

241. spacer 44.12|4874276|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023822 (Escherichia coli strain 7/2 plasmid p7_2.2, complete sequence) position: , mismatch: 9, identity: 0.735

cgattagc-tacgaacaattggacgatgtagatga	CRISPR spacer
-aagaagtatacgaacaactggacgatgtatattc	Protospacer
 .*  **. *********.*********** **

242. spacer 44.41|4876390|34|NC_019729|CRISPRCasFinder,CRT matches to MK291442 (Paracoccus phage vB_PkoS_Pkon1, complete genome) position: , mismatch: 9, identity: 0.735

tccttgcgattgacaatgaagcccgccagcgagc	CRISPR spacer
ccttgtcgatgggcaatgaagcccgccagcaaag	Protospacer
.*.*  **** *.*****************.*.

243. spacer 46.8|4978411|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.735

ccaaagccatgttggcgccgatcgcaactgtgcg	CRISPR spacer
ccgtcagcgtgttggcgccgatcgccaccgtgcc	Protospacer
**.  . *.**************** **.****

244. spacer 46.8|4978411|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.735

---ccaaagccatgttggcgccgatcgcaactgtgcg	CRISPR spacer
tggtcaggg---tgttggcgccgatcgccaccgtgcc	Protospacer
   .**..*   **************** **.****

245. spacer 58.6|6126094|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.735

agtcgtcggggtctggcggttcgtcggtcgattc	CRISPR spacer
gatcgtcggggtctgcctgttcgtcggcggcctg	Protospacer
..************* * *********. * .*

246. spacer 58.6|6126094|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.735

agtcgtcggggtctggcggttcgtcggtcgattc	CRISPR spacer
gatcgtcggggtctgcctgttcgtcggcggcctg	Protospacer
..************* * *********. * .*

247. spacer 58.6|6126094|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007231 (Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

agtcgtcggggtctggcggttcgtcggtcgattc	CRISPR spacer
agtggtaggggtctggcggttcgtgagccagacc	Protospacer
*** ** ***************** .*.*.. .*

248. spacer 58.6|6126094|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MN694101 (Marine virus AFVG_250M707, complete genome) position: , mismatch: 9, identity: 0.735

agtcgtcggggtctggcggttcgtcggtcgattc	CRISPR spacer
agttgtcggggtctggcgtttcgtagaagggatg	Protospacer
***.************** ***** *.  *. *

249. spacer 58.24|6127405|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to AF440571 (Sulfolobus islandicus filamentous virus, partial genome) position: , mismatch: 9, identity: 0.735

ctaattgtccaaaagttggattaagaactgccgc	CRISPR spacer
gtaattgtccaaatggtggattaagctcattcgt	Protospacer
 ************ * *********  *  .**.

250. spacer 58.26|6127551|36|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MN693849 (Marine virus AFVG_250M1030, complete genome) position: , mismatch: 9, identity: 0.75

tgatgcgcgtgtaggatgcgcgccccccgttggatt	CRISPR spacer
cggtgtgcgtgtaggatgcgcaccccccgcgtgaag	Protospacer
.*.**.***************.*******.  **

251. spacer 58.53|6129544|37|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 9, identity: 0.757

tttgctgttcagttaatttaatatttgtttcaataaa	CRISPR spacer
tttgtttttcagttaatttaatatttctactatttat	Protospacer
****.* ******************* * ..* * *

252. spacer 62.4|6577966|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_017483 (Lactococcus lactis subsp. lactis CV56 plasmid pCV56A, complete sequence) position: , mismatch: 9, identity: 0.727

caatatcatttttagaaatattggaaatatttt	CRISPR spacer
tggagacatttttagaaatattggaaagactta	Protospacer
... . ********************* *.**

253. spacer 62.4|6577966|33|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_019308 (Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence) position: , mismatch: 9, identity: 0.727

caatatcatttttagaaatattggaaatatttt	CRISPR spacer
tggagacatttttagaaatattggaaagactta	Protospacer
... . ********************* *.**

254. spacer 64.3|6967392|30|NC_019729|CRT matches to MN813693 (Mycobacterium phage Imvubu, complete genome) position: , mismatch: 9, identity: 0.7

cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
agtaacacaaccagcaccaacaccaacacc	Protospacer
 ... *.  ******.**************

255. spacer 3.1|377940|36|NC_019729|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 10, identity: 0.722

tatctaaatcaattaactgaattaggaattagcaga	CRISPR spacer
aattaaaatcaattaacagaattaagaattatactg	Protospacer
 **. ************ ******.******    .

256. spacer 37.1|4153115|33|NC_019729|CRISPRCasFinder matches to NC_049930 (Enterococcus phage vB_EfaP_Zip, complete genome) position: , mismatch: 10, identity: 0.697

gtgatgagtaattttaagcaatttatggatgat	CRISPR spacer
gtgataagtaattttaaacaatttcatagtata	Protospacer
*****.***********.******   ..*.

257. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to KY883658 (Vibrio phage JSF27, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

258. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to KY883657 (Vibrio phage JSF23, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

259. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to MT066160 (Vibrio phage Saratov-12, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

260. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_015158 (Vibrio phage ICP2, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

261. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to KM224878 (Vibrio phage ICP2_2011_A, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

262. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to HQ641346 (Vibrio phage ICP2_2006_A, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

263. spacer 44.28|4875437|34|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to MT767883 (Vibrio phage Saratov-15, complete genome) position: , mismatch: 10, identity: 0.706

aagatgatttttagagagtgaacaaatccgatta	CRISPR spacer
cggatgatttttggagagtgagcaaagtctacag	Protospacer
 .**********.********.**** .* *. .

264. spacer 62.17|6578914|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007231 (Yersinia similis strain Y_sim_228 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ttcatagatgtggaatttgacgttttccatgagc	CRISPR spacer
gctgcaggggtggaatttgacgttatccatcaga	Protospacer
 ....**. *************** ***** **

265. spacer 62.17|6578914|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ttcatagatgtggaatttgacgttttccatgagc	CRISPR spacer
agctgcggggtggaatttgacgttatccatcaga	Protospacer
  *   *. *************** ***** **

266. spacer 64.3|6967392|30|NC_019729|CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 10, identity: 0.667

------cacgccgacaccagcgccaacaccaacacc	CRISPR spacer
gggcggcacaccaacaccaacaccaacacc------	Protospacer
      ***.**.******.*.********

267. spacer 3.2|378006|36|NC_019729|CRISPRCasFinder matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.694

catttaagcaaattaactgaattattcctaaataat	CRISPR spacer
agcttatgcaaattaacttaattattcctgagctga	Protospacer
 ..*** *********** **********.*.. .

268. spacer 5.1|533418|33|NC_019729|CRISPRCasFinder matches to NZ_CP035463 (Photobacterium damselae subsp. damselae strain KC-Na-NB1 plasmid pFPPDNB1-5, complete sequence) position: , mismatch: 11, identity: 0.667

tttgttgcattaatttcagcaacaggcaagatg	CRISPR spacer
attgttgctttattttcagcaacagcttttgct	Protospacer
 ******* *** ************ .   ..

269. spacer 32.1|3371418|32|NC_019729|CRISPRCasFinder matches to MN694547 (Marine virus AFVG_250M388, complete genome) position: , mismatch: 11, identity: 0.656

aaaaatccgttgccgaacttccttcttccttt	CRISPR spacer
cgtttcttcttgccgagcttcctccttccttt	Protospacer
 .   ... *******.******.********

270. spacer 40.5|4644999|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MH976516 (Corynebacterium phage PeteyPab, complete genome) position: , mismatch: 11, identity: 0.676

tccgtcagaagggcaaaaagaagggaaaggtttt	CRISPR spacer
ccgcgaagaagggcaagcagaagggaaaggccga	Protospacer
.*    **********. ************..

271. spacer 40.5|4644999|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MG198778 (Corynebacterium phage PotatoChip, complete genome) position: , mismatch: 11, identity: 0.676

tccgtcagaagggcaaaaagaagggaaaggtttt	CRISPR spacer
ccgcgaagaagggcaagcagaagggaaaggccga	Protospacer
.*    **********. ************..

272. spacer 40.5|4644999|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MG198780 (Corynebacterium phage Zion, complete genome) position: , mismatch: 11, identity: 0.676

tccgtcagaagggcaaaaagaagggaaaggtttt	CRISPR spacer
ccgcgaagaagggcaagcagaagggaaaggccga	Protospacer
.*    **********. ************..

273. spacer 40.5|4644999|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MH926056 (Corynebacterium phage Cruella, complete genome) position: , mismatch: 11, identity: 0.676

tccgtcagaagggcaaaaagaagggaaaggtttt	CRISPR spacer
ccgcgaagaagggcaagcagaagggaaaggccga	Protospacer
.*    **********. ************..

274. spacer 40.5|4644999|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MG198776 (Corynebacterium phage C3PO, complete genome) position: , mismatch: 11, identity: 0.676

tccgtcagaagggcaaaaagaagggaaaggtttt	CRISPR spacer
ccgcgaagaagggcaagcagaagggaaaggccga	Protospacer
.*    **********. ************..

275. spacer 40.5|4644999|34|NC_019729|CRISPRCasFinder,CRT,PILER-CR matches to MK977700 (Corynebacterium phage Stickynote, complete genome) position: , mismatch: 11, identity: 0.676

tccgtcagaagggcaaaaagaagggaaaggtttt	CRISPR spacer
ccgcgaagaagggcaagcagaagggaaaggccga	Protospacer
.*    **********. ************..

276. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581091 (Vibrio phage Cla, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

277. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581096 (Vibrio phage pVa-5, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

278. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to MK672804 (Vibrio phage Va_178/90_p41, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

279. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658673 (Vibrio phage H2 PGK-2017, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

280. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581093 (Vibrio phage Pel, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

281. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581097 (Vibrio phage pVa-6, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

282. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658677 (Vibrio phage P3, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

283. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581098 (Vibrio phage VaK, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

284. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658674 (Vibrio phage H8, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

285. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658676 (Vibrio phage P2, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

286. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581090 (Vibrio phage Her, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

287. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658678 (Vibrio phage pVa-3, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

288. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658679 (Vibrio phage pVa-4, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

289. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to MK672800 (Vibrio phage Va_90-11-287_p41_Ba35, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

290. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to MK672799 (Vibrio phage Va_90-11-287_p41, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

291. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581092 (Vibrio phage Len, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

292. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581094 (Vibrio phage pVa-2, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

293. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to MK672803 (Vibrio phage Va_91-7-154_p41, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

294. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658680 (Vibrio phage pVa-8, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

295. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KY658675 (Vibrio phage H20, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

296. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581095 (Vibrio phage pVa-1, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

297. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581099 (Vibrio phage Strym, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

298. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to MK672801 (Vibrio phage Va_90-11-287_p41_T265, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

299. spacer 62.7|6578193|33|NC_019729|CRISPRCasFinder,CRT matches to KX581100 (Vibrio phage pVa-7, complete genome) position: , mismatch: 11, identity: 0.667

gcaattctggtaaacctaccaagcggcatttgt	CRISPR spacer
cgtcttctggttaacttaccaagcggcaaagcg	Protospacer
    ******* ***.************

300. spacer 7.10|604111|35|NC_019729|CRISPRCasFinder,CRT matches to NZ_CP014068 (Enterococcus gallinarum strain FDAARGOS_163 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.657

cagaagtatcggtgtcaataatatcgaaacattga	CRISPR spacer
ggatgttataggtgtcaatcatatcgaaacaccag	Protospacer
 .. . *** ********* ***********....

301. spacer 44.3|4873622|37|NC_019729|PILER-CR,CRISPRCasFinder,CRT matches to NC_010579 (Xylella fastidiosa M23 plasmid pXFAS01, complete sequence) position: , mismatch: 12, identity: 0.676

ctaaaatcgcgcaacatcaaattaacagcagcatcaa	CRISPR spacer
tccattctgcgccagatcaaattaacagcagcattct	Protospacer
.. *  ..**** * *******************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1508884 : 1552510

Bacillus_virus(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015175158.1\|1508884_1510153_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	6.9e-89	44.5
WP_015175159.1\|1510379_1511288_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_150111647.1\|1511607_1513197_+	GMC family oxidoreductase N-terminal domain-containing protein	NA	NA	NA	NA
WP_190274339.1\|1513734_1513947_+	hypothetical protein	NA	NA	NA	NA
WP_150111506.1\|1514298_1514475_+\|transposase	transposase	NA	NA	NA	NA
WP_015175161.1\|1514711_1514813_-	cytochrome b6-f complex subunit 6	NA	NA	NA	NA
WP_015175162.1\|1514890_1515985_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_015175163.1\|1516081_1516852_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015175164.1\|1517059_1517896_+	paraslipin	NA	NA	NA	NA
WP_015175165.1\|1517886_1518756_-	dihydropteroate synthase	S4VNV0	Pandoravirus	7.5e-18	26.8
WP_015175166.1\|1518892_1519453_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015175167.1\|1519575_1520301_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_006633749.1\|1520376_1520562_-	PCP reductase family protein	NA	NA	NA	NA
WP_190274340.1\|1520662_1520965_-	hypothetical protein	NA	NA	NA	NA
WP_051041482.1\|1520971_1521175_-	hypothetical protein	NA	NA	NA	NA
WP_015175168.1\|1521404_1522418_+	PleD family two-component system response regulator	NA	NA	NA	NA
WP_015175169.1\|1522436_1522841_+	hemerythrin	NA	NA	NA	NA
WP_015175170.1\|1522973_1529003_+	response regulator	A0A1V0SGX0	Hokovirus	2.4e-62	31.1
WP_015175171.1\|1529255_1529558_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_051041483.1\|1530533_1531463_-	hypothetical protein	NA	NA	NA	NA
WP_150111641.1\|1532238_1533304_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_015175173.1\|1536761_1540604_-	GAF domain-containing protein	NA	NA	NA	NA
WP_015175174.1\|1541163_1542543_-	photosystem II reaction center protein CP43	NA	NA	NA	NA
WP_015175175.1\|1542699_1543758_-	photosystem II D2 protein (photosystem q(a) protein)	C7BUY8	Synechococcus_phage	1.1e-185	89.8
WP_190274341.1\|1543844_1544012_-	hypothetical protein	NA	NA	NA	NA
WP_015175176.1\|1544056_1545382_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	2.9e-37	34.3
WP_015175177.1\|1545503_1546070_+	photosystem I assembly protein Ycf4	NA	NA	NA	NA
WP_041622963.1\|1546391_1547177_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_015175179.1\|1547496_1548840_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_015175181.1\|1549685_1551386_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-109	38.3
WP_015175182.1\|1551391_1552510_+\|transposase	transposase	A0A191SB13	Nostoc_phage	1.2e-116	63.9

DBSCAN-SWA_2

1614940 : 1658250

Nostoc_phage(10.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015175235.1\|1614940_1616131_+\|transposase	transposase	A0A191SB13	Nostoc_phage	1.4e-136	64.7
WP_015175236.1\|1616319_1616967_+\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_015175237.1\|1617393_1618992_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_015175238.1\|1619466_1619706_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_015175239.1\|1619926_1620652_+	peptidase	NA	NA	NA	NA
WP_015175240.1\|1620689_1621157_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_015175241.1\|1621417_1621897_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_015175242.1\|1622309_1623029_+	hypothetical protein	NA	NA	NA	NA
WP_015175243.1\|1623046_1624867_+	hypothetical protein	NA	NA	NA	NA
WP_015175244.1\|1624868_1626356_+	DUF1802 family protein	NA	NA	NA	NA
WP_015175245.1\|1626416_1627208_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015175246.1\|1627384_1628101_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_051041484.1\|1628234_1631327_-	EAL domain-containing protein	G3MA91	Bacillus_virus	2.5e-23	41.0
WP_015175248.1\|1631523_1632357_-	prohibitin family protein	A0A1X9SG52	Bacillus_phage	7.2e-10	26.0
WP_015175249.1\|1633011_1634154_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	1.4e-69	42.0
WP_041622407.1\|1635666_1636320_+	deoxyribonuclease V	A0A1V0SJW5	Klosneuvirus	3.2e-21	34.3
WP_015175252.1\|1636793_1637021_+	general stress protein	NA	NA	NA	NA
WP_190274342.1\|1637026_1637314_-	hypothetical protein	NA	NA	NA	NA
WP_015175253.1\|1637501_1638032_+	FHA domain-containing protein	NA	NA	NA	NA
WP_015175254.1\|1638267_1640271_+	FHA domain-containing protein	NA	NA	NA	NA
WP_015175255.1\|1640407_1640836_+	hypothetical protein	NA	NA	NA	NA
WP_015175256.1\|1641037_1642180_+	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	3.0e-19	25.2
WP_041622409.1\|1642621_1643962_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_015175258.1\|1644159_1645230_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_015175259.1\|1645491_1646574_+	AI-2E family transporter	NA	NA	NA	NA
WP_041622410.1\|1646974_1647160_+	hypothetical protein	NA	NA	NA	NA
WP_015175260.1\|1647251_1648544_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.0e-22	28.2
WP_150111641.1\|1649545_1650611_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_015175262.1\|1651127_1651760_-	radical SAM protein	A0A193H1Z9	Shigella_phage	9.9e-12	32.3
WP_015175263.1\|1651756_1652572_-	radical SAM protein	NA	NA	NA	NA
WP_015175264.1\|1652619_1653450_-	fatty acid desaturase	NA	NA	NA	NA
WP_015175265.1\|1653556_1653706_-	hypothetical protein	NA	NA	NA	NA
WP_015175266.1\|1653708_1654242_-	cytochrome b6-f complex iron-sulfur subunit	NA	NA	NA	NA
WP_015175267.1\|1654263_1654479_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_015175268.1\|1654510_1654885_-	DUF4405 domain-containing protein	NA	NA	NA	NA
WP_015175269.1\|1656387_1656801_-\|transposase	IS200/IS605 family transposase	A0A7E6	Microcystis_virus	4.0e-30	46.7
WP_015175270.1\|1656846_1658250_+\|transposase	transposase	A0A1S5RF32	Helicobacter_phage	6.6e-08	24.6

DBSCAN-SWA_3

2918738 : 2966541

Bacteriophage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015176215.1\|2918738_2919950_-\|transposase	transposase	A0A1L2BWN4	Bacteriophage	5.3e-123	55.9
WP_015176216.1\|2920219_2920813_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015176217.1\|2920938_2921694_+	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_015176218.1\|2921935_2922211_+	DUF1816 domain-containing protein	NA	NA	NA	NA
WP_015176219.1\|2922373_2923384_-	J domain-containing protein	A0A1V0SF83	Hokovirus	5.3e-15	26.2
WP_041622501.1\|2923731_2924019_-	hypothetical protein	NA	NA	NA	NA
WP_150111534.1\|2924268_2924472_+	hypothetical protein	NA	NA	NA	NA
WP_015176220.1\|2924695_2925985_-	glucose-1-phosphate adenylyltransferase	G3MA50	Bacillus_virus	7.4e-06	24.3
WP_041622502.1\|2926169_2926433_-	hypothetical protein	NA	NA	NA	NA
WP_015176221.1\|2926744_2928211_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA
WP_015176222.1\|2928397_2928814_-	fasciclin domain-containing protein	NA	NA	NA	NA
WP_015176223.1\|2928980_2929406_-	DUF2358 domain-containing protein	NA	NA	NA	NA
WP_015176224.1\|2929535_2930033_+	hypothetical protein	NA	NA	NA	NA
WP_015176225.1\|2930082_2931249_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	6.3e-12	24.3
WP_015176226.1\|2931432_2931714_+	WGxxGxxG-CTERM domain-containing protein	NA	NA	NA	NA
WP_015176227.1\|2931892_2932600_-	ROK family protein	NA	NA	NA	NA
WP_015176228.1\|2932632_2933325_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_015176229.1\|2933800_2934286_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_015176230.1\|2934305_2934743_-	hypothetical protein	NA	NA	NA	NA
WP_190274424.1\|2934739_2935330_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015176232.1\|2936012_2938064_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_015176233.1\|2938060_2939413_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_015176234.1\|2939416_2940379_-	MoxR family ATPase	NA	NA	NA	NA
WP_015176235.1\|2940434_2940971_-	hypothetical protein	NA	NA	NA	NA
WP_015176236.1\|2941156_2942500_-	glutathione-disulfide reductase	NA	NA	NA	NA
WP_015176237.1\|2942750_2943593_-	DUF4231 domain-containing protein	NA	NA	NA	NA
WP_190274425.1\|2944304_2944997_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-31	36.2
WP_015176239.1\|2945167_2945536_-	hypothetical protein	NA	NA	NA	NA
WP_015176240.1\|2945574_2946786_-\|transposase	transposase	A0A191SB13	Nostoc_phage	1.1e-123	57.7
WP_015176241.1\|2947076_2947805_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_015176242.1\|2948239_2948740_-	nucleoside deaminase	S4VYT2	Pandoravirus	7.3e-10	38.7
WP_015176243.1\|2948818_2949415_+	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_015176244.1\|2949863_2950697_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_015176245.1\|2950926_2951256_-	hypothetical protein	NA	NA	NA	NA
WP_015176246.1\|2951806_2953021_+\|transposase	transposase	A0A1L2BWU7	Bacteriophage	1.2e-90	45.7
WP_015176247.1\|2953081_2954308_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_015176248.1\|2954452_2955157_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_190274389.1\|2955211_2955388_-	hypothetical protein	NA	NA	NA	NA
WP_015176249.1\|2955458_2956244_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_015176250.1\|2956633_2957044_+	hypothetical protein	NA	NA	NA	NA
WP_041622503.1\|2957156_2957579_+	hypothetical protein	NA	NA	NA	NA
WP_190274390.1\|2958030_2958204_-	hypothetical protein	NA	NA	NA	NA
WP_015176251.1\|2958242_2959454_-\|transposase	transposase	A0A191SB13	Nostoc_phage	3.7e-124	58.0
WP_015176252.1\|2960093_2960297_-	hypothetical protein	NA	NA	NA	NA
WP_015176254.1\|2963382_2964879_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_190274391.1\|2965125_2965299_+	hypothetical protein	NA	NA	NA	NA
WP_190274310.1\|2965340_2965850_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_190274409.1\|2965935_2966541_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

4206945 : 4326347

Tupanvirus(27.78%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015177197.1\|4206945_4208418_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_015177198.1\|4208451_4209126_+	hypothetical protein	NA	NA	NA	NA
WP_015177199.1\|4209430_4209991_+	sugar O-acetyltransferase	NA	NA	NA	NA
WP_015177200.1\|4210179_4210644_+	hypothetical protein	NA	NA	NA	NA
WP_015177201.1\|4211334_4213743_+	GAF domain-containing protein	NA	NA	NA	NA
WP_015177202.1\|4214021_4214621_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_015177203.1\|4214818_4215400_+	manganese efflux pump	NA	NA	NA	NA
WP_015177204.1\|4215543_4216098_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_006634808.1\|4216290_4216428_-	photosystem II reaction center protein K	NA	NA	NA	NA
WP_015177205.1\|4216488_4217619_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.1e-72	40.1
WP_015177207.1\|4217985_4218435_-	hypothetical protein	NA	NA	NA	NA
WP_015177208.1\|4218694_4219492_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_015177209.1\|4219660_4219960_+	hypothetical protein	NA	NA	NA	NA
WP_015177210.1\|4220019_4224462_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.6e-74	25.6
WP_015177211.1\|4224733_4229836_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	D0R7J2	Paenibacillus_phage	4.6e-51	41.2
WP_150111674.1\|4229839_4232755_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.6e-77	28.0
WP_015177213.1\|4234353_4236105_-	hypothetical protein	NA	NA	NA	NA
WP_190274228.1\|4236209_4236428_+	hypothetical protein	NA	NA	NA	NA
WP_015177214.1\|4236481_4236712_+	hypothetical protein	NA	NA	NA	NA
WP_015177215.1\|4236762_4236975_+	hypothetical protein	NA	NA	NA	NA
WP_190274229.1\|4238170_4238572_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	6.9e-11	31.2
WP_015177219.1\|4238675_4239332_-	hypothetical protein	NA	NA	NA	NA
WP_015177220.1\|4239683_4240649_-	ATPase BadF/BadG/BcrA/BcrD type	NA	NA	NA	NA
WP_015177221.1\|4240721_4241078_-	hypothetical protein	NA	NA	NA	NA
WP_015177222.1\|4241294_4241621_+	phasin family protein	NA	NA	NA	NA
WP_015177223.1\|4241920_4242508_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_015177224.1\|4242843_4246734_-	replicative DNA helicase	G9BWB0	Planktothrix_phage	3.9e-135	29.9
WP_015177225.1\|4247329_4247788_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_015177226.1\|4247952_4253055_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.0e-21	27.9
WP_015177227.1\|4253674_4254514_+	glycosyl transferase family 8	NA	NA	NA	NA
WP_015177228.1\|4254751_4255525_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_015177229.1\|4255745_4255949_+	hypothetical protein	NA	NA	NA	NA
WP_015177230.1\|4256149_4257151_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.2e-57	39.6
WP_015177231.1\|4257239_4258163_+	alpha-1,2-fucosyltransferase	NA	NA	NA	NA
WP_015177232.1\|4258192_4259029_+	hypothetical protein	NA	NA	NA	NA
WP_015177233.1\|4259303_4260455_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015177234.1\|4260547_4262551_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.1e-47	30.6
WP_041622600.1\|4262809_4264009_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015177236.1\|4264127_4265090_+	glycosyl transferase	NA	NA	NA	NA
WP_015177237.1\|4265089_4266217_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	1.3e-75	56.0
WP_015177238.1\|4266283_4267258_+	hypothetical protein	NA	NA	NA	NA
WP_015177239.1\|4267254_4268127_+	hypothetical protein	NA	NA	NA	NA
WP_015177240.1\|4268273_4269296_+	hypothetical protein	NA	NA	NA	NA
WP_015177241.1\|4269310_4270261_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9L4U8	Tupanvirus	9.0e-41	34.3
WP_015177242.1\|4270456_4270831_-	hypothetical protein	NA	NA	NA	NA
WP_015177243.1\|4271000_4272677_-	AarF/ABC1/UbiB kinase family protein	C7U092	Ostreococcus_tauri_virus	1.1e-46	30.7
WP_015177244.1\|4273235_4274393_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	7.1e-40	36.9
WP_015177245.1\|4274520_4275300_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_150111675.1\|4275487_4276554_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_150111554.1\|4280413_4280779_+	hypothetical protein	NA	NA	NA	NA
WP_051041522.1\|4280721_4281219_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_041622603.1\|4281329_4281821_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051041523.1\|4281825_4282401_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_150111676.1\|4282367_4282583_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_071883993.1\|4282584_4282890_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_083888237.1\|4282850_4283078_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_150111555.1\|4283946_4284093_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_083888119.1\|4290353_4291553_-\|transposase	ISAzo13 family transposase	NA	NA	NA	NA
WP_015177246.1\|4291712_4292093_+	hypothetical protein	NA	NA	NA	NA
WP_015177247.1\|4292147_4293839_+\|transposase	transposase	NA	NA	NA	NA
WP_015177248.1\|4294061_4294577_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA
WP_015177249.1\|4294619_4294967_+	DUF760 domain-containing protein	NA	NA	NA	NA
WP_015177250.1\|4295270_4296491_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-25	29.7
WP_015177251.1\|4296804_4297719_+	M23 family metallopeptidase	A0A075BS18	Microcystis_phage	1.5e-13	47.4
WP_150111556.1\|4298072_4298288_-	hypothetical protein	NA	NA	NA	NA
WP_015177253.1\|4298571_4300881_-	calcium-binding protein	NA	NA	NA	NA
WP_015177254.1\|4301011_4301575_+	hypothetical protein	NA	NA	NA	NA
WP_015177255.1\|4301676_4302480_-	DUF4058 family protein	NA	NA	NA	NA
WP_015177256.1\|4302713_4303415_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015177257.1\|4303717_4304002_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3IAZ0	Synechococcus_phage	1.3e-08	35.4
WP_015177258.1\|4304145_4304538_+	transcriptional repressor	NA	NA	NA	NA
WP_015177259.1\|4305007_4307218_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	9.7e-38	27.3
WP_015177260.1\|4308239_4310240_+\|protease	PatA/PatG family cyanobactin maturation protease	A0A2K9L1P3	Tupanvirus	1.7e-09	30.6
WP_015177261.1\|4310336_4310588_+	cyanobactin biosynthesis system PatB/AcyB/McaB family protein	NA	NA	NA	NA
WP_150111677.1\|4310615_4311371_+	cyanobactin biosynthesis PatC/TenC/TruC family protein	NA	NA	NA	NA
WP_015177263.1\|4311420_4313751_+	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_015177264.1\|4313885_4314113_+	microcyclamide/patellamide family RiPP	NA	NA	NA	NA
WP_041622606.1\|4314384_4316088_+	LynF/TruF/PatF family peptide O-prenyltransferase	NA	NA	NA	NA
WP_015177266.1\|4316175_4317138_+	LynF/TruF/PatF family peptide O-prenyltransferase	NA	NA	NA	NA
WP_015177267.1\|4317330_4321209_+\|protease	PatA/PatG family cyanobactin maturation protease	NA	NA	NA	NA
WP_015177268.1\|4321665_4322463_+	hypothetical protein	NA	NA	NA	NA
WP_041623246.1\|4322858_4323047_-	hypothetical protein	NA	NA	NA	NA
WP_015177270.1\|4323192_4323387_-	hypothetical protein	NA	NA	NA	NA
WP_015177271.1\|4323557_4323749_-	hypothetical protein	NA	NA	NA	NA
WP_015177273.1\|4324086_4325202_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_015177274.1\|4325336_4326347_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_5

4376273 : 4445746

Pseudomonas_phage(12.5%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015177313.1\|4376273_4376963_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015177314.1\|4377328_4378918_+	Hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	1.2e-16	25.8
WP_015177315.1\|4378991_4379819_+	DUF1963 domain-containing protein	NA	NA	NA	NA
WP_015177316.1\|4380008_4380530_-	L,D-transpeptidase	NA	NA	NA	NA
WP_015177317.1\|4380631_4381270_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_150111679.1\|4381510_4381870_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_015177320.1\|4382021_4383860_-\|protease	ATP-dependent zinc metalloprotease FtsH3	M4QMW8	Micromonas_pusilla_virus	4.2e-135	46.3
WP_083888238.1\|4384431_4385244_+	hypothetical protein	NA	NA	NA	NA
WP_015177322.1\|4385277_4385898_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015177323.1\|4386043_4392757_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.7e-06	33.7
WP_015177324.1\|4392841_4393405_+	hypothetical protein	NA	NA	NA	NA
WP_015177325.1\|4393396_4393591_-	hypothetical protein	NA	NA	NA	NA
WP_015177326.1\|4393862_4394714_-	DUF21 domain-containing protein	NA	NA	NA	NA
WP_015177327.1\|4395144_4396230_-	hypothetical protein	NA	NA	NA	NA
WP_015177328.1\|4396344_4397262_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_015177329.1\|4397827_4399093_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_190274434.1\|4399234_4400251_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	1.9e-20	43.6
WP_015177331.1\|4400367_4401084_-	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.1e-87	73.6
WP_015177333.1\|4401953_4405658_+	DUF4347 domain-containing protein	A0A2D1GMW8	Marinobacter_phage	1.2e-11	33.8
WP_015177334.1\|4406049_4406766_-	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-86	75.7
WP_015177335.1\|4407024_4408209_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_015177336.1\|4408277_4409705_-	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_015177337.1\|4409817_4410429_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015177338.1\|4410512_4411685_-	hypothetical protein	NA	NA	NA	NA
WP_041623260.1\|4411695_4413171_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_015177340.1\|4414286_4418759_+	PAS domain S-box protein	Q8QKV7	Ectocarpus_siliculosus_virus	2.7e-47	34.2
WP_015177341.1\|4418764_4420093_+	response regulator	W8CYM9	Bacillus_phage	4.3e-17	36.4
WP_041623266.1\|4420112_4420682_-	colanic acid biosynthesis acetyltransferase WcaF	NA	NA	NA	NA
WP_015177343.1\|4420845_4421643_+	cation transporter	NA	NA	NA	NA
WP_015177344.1\|4421683_4421854_+	hypothetical protein	NA	NA	NA	NA
WP_015177345.1\|4421986_4422943_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015177346.1\|4423044_4424016_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015177347.1\|4424325_4424901_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_015177348.1\|4425184_4425607_+	hypothetical protein	NA	NA	NA	NA
WP_015177349.1\|4425646_4426834_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A191SB13	Nostoc_phage	7.7e-175	81.0
WP_015175181.1\|4426839_4428540_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-109	38.3
WP_015177351.1\|4429987_4431469_-	insulinase family protein	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	1.6e-12	21.6
WP_015177352.1\|4431650_4433249_-	insulinase family protein	A0A2K9LA15	Tupanvirus	3.2e-14	21.9
WP_015177354.1\|4434115_4436185_+	AarF/ABC1/UbiB kinase family protein	G9E4X0	Ostreococcus_lucimarinus_virus	7.4e-48	30.6
WP_015177355.1\|4436321_4437818_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015177356.1\|4437939_4439049_-	VWA domain-containing protein	NA	NA	NA	NA
WP_015177357.1\|4439286_4439562_+	hypothetical protein	NA	NA	NA	NA
WP_015177358.1\|4439771_4440725_+	hypothetical protein	NA	NA	NA	NA
WP_051041525.1\|4440973_4443619_-	hypothetical protein	NA	NA	NA	NA
WP_190274435.1\|4443995_4444619_+\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	3.9e-53	52.4
WP_041622580.1\|4444618_4445746_+\|transposase	transposase	A0A7P9	Microcystis_virus	2.0e-84	47.3

DBSCAN-SWA_6

5990670 : 5997442

Streptomyces_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015178505.1\|5990670_5990988_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.2e-12	40.2
WP_015178506.1\|5991061_5991826_+	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	9.1e-20	33.9
WP_150111693.1\|5992076_5992532_-	HD domain-containing protein	A0A141E1X8	Streptococcus_phage	1.4e-28	45.2
WP_015178508.1\|5992662_5993103_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_015178509.1\|5993139_5994195_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	5.3e-18	36.7
WP_015178510.1\|5994324_5995536_-\|transposase	transposase	A0A191SB13	Nostoc_phage	2.6e-130	60.8
WP_015178511.1\|5996308_5997442_+	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	4.7e-20	25.3

DBSCAN-SWA_7

6267891 : 6277449

Ectocarpus_siliculosus_virus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015178693.1\|6267891_6270663_+	hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.9e-54	35.3
WP_015178694.1\|6270655_6271987_+	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_190274453.1\|6272085_6272226_+	hypothetical protein	NA	NA	NA	NA
WP_015178695.1\|6272405_6274490_+	FAD-dependent thymidylate synthase	G8EY29	Synechococcus_phage	1.7e-23	56.8
WP_015178696.1\|6274627_6275062_+	dUTP diphosphatase	A0A1L2BX65	Bacteriophage	1.6e-37	53.2
WP_015178697.1\|6275100_6275685_+	dCMP deaminase family protein	A0A2R4A259	Mycobacterium_phage	5.3e-20	47.2
WP_041623486.1\|6276142_6276403_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015178700.1\|6276504_6277449_+	histone deacetylase	A0A2K9L2T7	Tupanvirus	2.1e-34	30.5

DBSCAN-SWA_8

6377452 : 6446762

Microcystis_virus(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015178795.1\|6377452_6378316_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015178796.1\|6378637_6379096_-	hypothetical protein	NA	NA	NA	NA
WP_015178797.1\|6379150_6379513_-	hypothetical protein	NA	NA	NA	NA
WP_015178798.1\|6379597_6379936_-	hypothetical protein	NA	NA	NA	NA
WP_015178799.1\|6380115_6380613_-	hypothetical protein	NA	NA	NA	NA
WP_015178800.1\|6381307_6383308_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_150111611.1\|6383413_6383611_-	hypothetical protein	NA	NA	NA	NA
WP_015178802.1\|6383874_6385653_+	SWIM zinc finger domain-containing protein	NA	NA	NA	NA
WP_015178803.1\|6385662_6390423_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_015178805.1\|6390720_6391563_-	DUF1822 family protein	NA	NA	NA	NA
WP_150111612.1\|6391566_6392190_-	hypothetical protein	NA	NA	NA	NA
WP_015178807.1\|6392525_6393830_-	bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase	NA	NA	NA	NA
WP_015178808.1\|6394094_6394835_-	DUF1868 domain-containing protein	NA	NA	NA	NA
WP_015178809.1\|6395011_6395989_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_015178810.1\|6396231_6397221_+	hypothetical protein	NA	NA	NA	NA
WP_190274435.1\|6397738_6398362_+\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	3.9e-53	52.4
WP_015178812.1\|6402102_6403137_-	hypothetical protein	NA	NA	NA	NA
WP_015178813.1\|6403673_6405074_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_015178814.1\|6405143_6405698_+	hypothetical protein	NA	NA	NA	NA
WP_015178815.1\|6406183_6406666_+	BON domain-containing protein	NA	NA	NA	NA
WP_015178816.1\|6407071_6408283_+	hypothetical protein	NA	NA	NA	NA
WP_190274273.1\|6409272_6409416_+	hypothetical protein	NA	NA	NA	NA
WP_015178817.1\|6409769_6410831_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015178818.1\|6411014_6415913_-	response regulator	A0A2K9L0Z8	Tupanvirus	7.7e-19	26.9
WP_190274274.1\|6415986_6416130_-	hypothetical protein	NA	NA	NA	NA
WP_006633984.1\|6416627_6417050_+	adenosylmethionine decarboxylase	M4QTD5	Synechococcus_phage	2.9e-15	40.6
WP_015178819.1\|6417134_6417734_-	hypothetical protein	NA	NA	NA	NA
WP_015178820.1\|6417879_6418299_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.3e-15	40.4
WP_015178821.1\|6418336_6418534_-	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_071884005.1\|6418520_6418739_-	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_015175269.1\|6418885_6419299_-\|transposase	IS200/IS605 family transposase	A0A7E6	Microcystis_virus	4.0e-30	46.7
WP_015175270.1\|6419344_6420748_+\|transposase	transposase	A0A1S5RF32	Helicobacter_phage	6.6e-08	24.6
WP_015178822.1\|6420879_6422292_-	cytochrome c biogenesis protein	NA	NA	NA	NA
WP_015178823.1\|6422560_6423292_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_150111613.1\|6423520_6423763_-	hypothetical protein	NA	NA	NA	NA
WP_015178824.1\|6423872_6424589_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_190274275.1\|6424861_6425008_-	hypothetical protein	NA	NA	NA	NA
WP_015178825.1\|6425183_6425897_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015178826.1\|6426006_6427344_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_015178827.1\|6427463_6428015_+	peroxiredoxin	NA	NA	NA	NA
WP_015178828.1\|6428373_6428913_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_015178829.1\|6429294_6429897_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.1e-41	45.1
WP_015178830.1\|6430185_6432921_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015178831.1\|6433310_6435539_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.5e-184	44.6
WP_015178832.1\|6436010_6436751_+	pyruvate formate lyase-activating protein	NA	NA	NA	NA
WP_015178833.1\|6436875_6439506_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_015178834.1\|6439735_6440029_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_015178835.1\|6440152_6440467_+	hypothetical protein	NA	NA	NA	NA
WP_041623522.1\|6440647_6441553_+	30S ribosomal protein S6 modification protein RimK	S5VKI3	Leptospira_phage	3.0e-17	30.1
WP_190274446.1\|6441560_6442043_-	biphenyl 2,3-dioxygenase	NA	NA	NA	NA
WP_015178838.1\|6442263_6443382_-	tocopherol cyclase family protein	NA	NA	NA	NA
WP_015178839.1\|6443609_6444191_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_015178840.1\|6444374_6445181_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_015178841.1\|6445550_6446762_+\|transposase	transposase	A0A191SB13	Nostoc_phage	3.1e-123	57.7

DBSCAN-SWA_9

6640263 : 6725911

Leptospira_phage(40.0%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015178992.1\|6640263_6641004_+\|tail	low-complexity tail membrane protein	NA	NA	NA	NA
WP_015178993.1\|6641245_6641470_+	hypothetical protein	NA	NA	NA	NA
WP_015178994.1\|6641682_6642906_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015178996.1\|6643294_6644512_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L470	Tupanvirus	2.3e-41	30.3
WP_015178997.1\|6645079_6645655_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_190274282.1\|6645813_6645954_+	hypothetical protein	NA	NA	NA	NA
WP_015178998.1\|6646251_6646560_-	DUF3493 domain-containing protein	NA	NA	NA	NA
WP_015178999.1\|6646631_6647900_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	1.5e-88	46.1
WP_015179000.1\|6648132_6649365_-	DUF445 domain-containing protein	NA	NA	NA	NA
WP_015179001.1\|6649482_6650196_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_015179002.1\|6650706_6651651_-	response regulator	NA	NA	NA	NA
WP_015179003.1\|6651807_6652902_+	hypothetical protein	NA	NA	NA	NA
WP_015179004.1\|6653161_6654157_-	DUF4349 domain-containing protein	NA	NA	NA	NA
WP_015179005.1\|6654613_6657076_+	ATP-dependent helicase	NA	NA	NA	NA
WP_015179006.1\|6657602_6659285_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015179007.1\|6659585_6661460_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_150111705.1\|6661928_6664388_-	EAL domain-containing protein	NA	NA	NA	NA
WP_041622769.1\|6664753_6665581_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_015179011.1\|6665749_6666466_+	hypothetical protein	NA	NA	NA	NA
WP_015179012.1\|6666774_6669915_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.0e-77	24.7
WP_015179014.1\|6670360_6673498_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.0e-64	21.5
WP_015179015.1\|6673671_6675672_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_015179016.1\|6675946_6676396_-	hypothetical protein	NA	NA	NA	NA
WP_041623562.1\|6676824_6678036_+	sensor histidine kinase	NA	NA	NA	NA
WP_015179018.1\|6678203_6678842_+	response regulator transcription factor	NA	NA	NA	NA
WP_015179019.1\|6678958_6679582_-	precorrin-8X methylmutase	NA	NA	NA	NA
WP_015179020.1\|6679703_6680510_-	TPM domain-containing protein	NA	NA	NA	NA
WP_015179023.1\|6691429_6691630_+	hypothetical protein	NA	NA	NA	NA
WP_015179024.1\|6691637_6691820_+	hypothetical protein	NA	NA	NA	NA
WP_015179025.1\|6691824_6692013_+	hypothetical protein	NA	NA	NA	NA
WP_015179026.1\|6692322_6692781_+	hypothetical protein	NA	NA	NA	NA
WP_150111706.1\|6692803_6692995_+	cytoplasmic protein	NA	NA	NA	NA
WP_015179028.1\|6693102_6693303_+	hypothetical protein	NA	NA	NA	NA
WP_190274283.1\|6693470_6693776_+	hypothetical protein	NA	NA	NA	NA
WP_015179030.1\|6693849_6694500_+	Opioid growth factor receptor (OGFr) conserved region	NA	NA	NA	NA
WP_015179031.1\|6695032_6696388_+	hypothetical protein	NA	NA	NA	NA
WP_015176254.1\|6696403_6697900_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_051041563.1\|6697935_6700107_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_015179033.1\|6700140_6701100_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_041622770.1\|6703519_6703705_+	hypothetical protein	NA	NA	NA	NA
WP_150111533.1\|6704764_6706259_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041622773.1\|6706331_6706598_+	hypothetical protein	NA	NA	NA	NA
WP_083888215.1\|6706689_6707268_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_015179034.1\|6707337_6708054_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015179035.1\|6708101_6713576_-	AAA family ATPase	NA	NA	NA	NA
WP_015179036.1\|6714259_6715591_-	AAA family ATPase	NA	NA	NA	NA
WP_015179037.1\|6715929_6716820_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_015179038.1\|6717342_6718539_+\|transposase	transposase	A0A1L2BWT9	Bacteriophage	1.1e-38	58.0
WP_041622775.1\|6718659_6719934_+	cell division protein FtsZ	NA	NA	NA	NA
WP_015179040.1\|6720073_6720853_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_190274284.1\|6720899_6721193_+	hypothetical protein	NA	NA	NA	NA
WP_015179041.1\|6721185_6721995_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_015179042.1\|6722187_6722589_-	DNA sulfur modification protein DndE	NA	NA	NA	NA
WP_015179043.1\|6722855_6724853_-	DNA sulfur modification protein DndD	NA	NA	NA	NA
WP_015179044.1\|6725458_6725911_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_019729.1|WP_190274390.1|2958030_2958204_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_019729.1|WP_190274390.1|2958030_2958204_-|hypothetical-protein

2958030_2958204_-

57 aa aa

2918738-2966541

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_019729_26	Orphan	26.1\|2853118\|28\|NC_019729\|CRISPRCasFinder	2853118-2853145	28	2949589-2949616	2

1. spacer 26.1|2853118|28|NC_019729|CRISPRCasFinder matches to NC_019729 position: 2949589-2949616, mismatch: 2

caaatctaaaatctcaaatcgactgacc	CRISPR spacer
caaatcaaaaatctcaaatcgattgacc	Protospacer
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