CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_019741	Microcoleus sp. PCC 7113 plasmid pMIC7113.05, complete sequence	1 crisprs	NA	0	1	0
NC_019742	Microcoleus sp. PCC 7113 plasmid pMIC7113.06, complete sequence	0 crisprs	NA	0	0	0
NC_019743	Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence	0 crisprs	NA	0	0	0
NC_019761	Microcoleus sp. PCC 7113 plasmid pMIC7113.04, complete sequence	0 crisprs	NA	0	0	0
NC_019760	Microcoleus sp. PCC 7113 plasmid pMIC7113.02, complete sequence	0 crisprs	NA	0	0	0
NC_019738	Microcoleus sp. PCC 7113, complete sequence	27 crisprs	Cas14c_CAS-V-F,PD-DExK,RT,cas14j,csa3,Cas9_archaeal,DinG,c2c10_CAS-V-U3,csx3,WYL,csx1,cas10,csm3gr7,csx10gr5,csx19,c2c8_V-U2,Cas14u_CAS-V,cas2,cas1,cas4,cas6,cas3,csc1gr5,csc2gr7,cas10d,c2c5_V-U5,c2c9_V-U4,DEDDh,2OG_CAS	2	9	3
NC_019739	Microcoleus sp. PCC 7113 plasmid pMIC7113.01, complete sequence	0 crisprs	cas3	0	0	0
NC_019762	Microcoleus sp. PCC 7113 plasmid pMIC7113.07, complete sequence	0 crisprs	NA	0	0	0
NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	9 crisprs	cas1,cas2,cas6,csx21,csm3gr7,csx19,PD-DExK,csm6,csm2gr11,csx10gr5,cas10,WYL,csx3,cas3,cas4	0	53	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019741_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019741_1

36434-36542

Orphan

Consensus_repeat	Method
GTCGAGGTCGAGGTCGTCGCGGGTGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019741_1

>merge|NC_019741|1|36434-36542|CRISPRCasFinder
GTCGAGATCGAGGTCGAGGTCGAGGTCGTCGCGGGTGAGGGCGCTGGCGTTGGTGAGGGCGCTGTCGATGACGCGGGTGAGGTCGCTGTCGAGGTCGAGGTCGTCGCGG

>NC_019741|1|1|36434-36542|CRISPRCasFinder
GTCGAGATCGAGGTCGAGGTCGAGGTCG	TCGCGGGTGAGGGCGCTGGCGTTGGTGAGGGCGCTGTCGATGACGCGGGTGAG
GTCGCTGTCGAGGTCGAGGTCGTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019741.1\|WP_015186309.1\|26444_26687_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NC_019741.1\|WP_015186316.1\|31877_32765_+\|abortive-infection-family-protein	unknown	unknown	gnl\|CDD\|379577
NC_019741.1\|WP_015186314.1\|30242_30560_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NC_019741.1\|WP_015186308.1\|25739_26105_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_019741.1\|WP_015186317.1\|32761_35926_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NC_019741.1\|WP_015186311.1\|28060_29656_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NC_019741.1\|WP_015186313.1\|29927_30233_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_019741.1\|WP_015186312.1\|29664_29931_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227
NC_019741.1\|WP_015186315.1\|30546_31878_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341193
NC_019741.1\|WP_015186310.1\|26773_27925_+\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|206739

Protein	Function_ID	Function_description	E-value
NC_019741.1\|WP_015186309.1\|26444_26687_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.89621e-07
NC_019741.1\|WP_015186316.1\|31877_32765_+\|abortive-infection-family-protein	gnl\|CDD\|379577	pfam14355, Abi_C, Abortive infection C-terminus. This domain is found at the C-terminus of the Lactococcus lactis abortive infection protein Abi-859. This protein confers bacteriophage resistance.	3.13184e-17
NC_019741.1\|WP_015186314.1\|30242_30560_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	1.51528e-23
NC_019741.1\|WP_015186308.1\|25739_26105_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.86246e-14
NC_019741.1\|WP_015186317.1\|32761_35926_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.916e-162
NC_019741.1\|WP_015186311.1\|28060_29656_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	3.91907e-99
NC_019741.1\|WP_015186313.1\|29927_30233_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	5.67463e-16
NC_019741.1\|WP_015186312.1\|29664_29931_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	3.53463e-07
NC_019741.1\|WP_015186315.1\|30546_31878_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341193	cd17512, RMtype1_S_BceB55ORF5615P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Bacillus cereus HuB5-5 S subunit (S.BceB55ORF5615P) TRD2-CR2. The recognition sequence of Bacillus cereus HuB5-5 S subunit (S.BceB55ORF5615P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.79222e-91
NC_019741.1\|WP_015186310.1\|26773_27925_+\|50S-ribosome-binding-GTPase	gnl\|CDD\|206739	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins. The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.	1.53248e-23

>NC_019741.1|WP_015186317.1|32761_35926_+|type-I-restriction-endonuclease-subunit-R
MTPPHPDSEEALELETIALFEQLGYTTANCYNEWNSGTSTLGRETRSDVVLISKLRPALEKLNPHLPNQAITLAIEELTRDRSALTLASANREIYDRLKDRVKVTYRNDEGEDVTENVTVIDWQTPTNNEFFLASQFWIAGEMYTRRTDLIGFINGIPLIFIELKASRERVEFAYQNNFCDYRKEIPQLFWYNGIVILSNGSISKIGSLTATWEYFSDWKKINSEGEAGIISLDTMIRGTCDKTKLLDIVENFTLFSEEQGGLIKLVAKNHQYLGVNNCLEAVQNIRENQGKLGVFWHTQGSGKSFSMQFFSQKVHRTVEGNWTFVIITDRDDLDDQIYKNFAKTGAVTEPEKEVRAKSGEHLKQLLTEDHRYVFTLIQKFRTKKGEKYPKLSDRDDVIVIADEAHRSQYDSFARNMRTALPQAGFIGFTGTPLLVGEEATRREFGDYISIYNFRQSIEDGATVPLFYENRIPQLELTNSELNEEITDAIESADLDEAQENKLEREFSREYHLITREERLDEIAQDIVTHFLGRGYQGKAMVVSIDRFTAVKMYNKVQYYWQQQLTELQNQLTTARESEREQLTAKIQYLEETDMAVVISSSQNEEEAFNKKGLTIKPHRQRLAKEKPGLDVKFKDASNPLRIVFVCAMWMTGFDAPSCSTIYLDKPMRNHTLMQTIARANRVFGEKVNGLIVDYIGVFRDLQRALAIYGSASGGGVEAGDTPVQSKEALVEKLRKAIADTLQFCSDRGINFDQIQTTTQAFARTKLWNDAVEAILVNDDSKQRYLALTQNVTKLYKAILPDPSAGEFNPTLYAFGEITKRIRNLASPVDISEVKAAVEEILDESIGTLKYVIPESNQLIDLSQIDFDALKAQFDKGYKHTEAEKLKGAISIQLTQMVRLNKSRMNYLDKFQQMIDEYNAGSRNVETFFTELVEFAQELKVEDKRAIAENLEEEELAIVDLLTKPDITLTEKEKLDVKKVAKELLSTLKQEKLVLDWRRRQKTKAEVKVAIADILDQLPESYSTDVYERKCEEVYHHVYESYSGAGRSIYNTAA
>NC_019741.1|WP_015186316.1|31877_32765_+|abortive-infection-family-protein
MQISGITISQLALIITGDSNISPYRSRYQLIDFFQEIDSDNADREHLSRREYTECKIKEANGTSNLPIVFRNALDPRNFLETTFELEEVVKKLNVFLEYDKYKIVKIGEFYEVKDNRGMAVELELPFEGSTEISHVFIEEQIQKCERKIREGDFDGAITNARSLLEAVLLYVEKKLSQSPPEYDGKLPKLYTRVQELLNLEPSRKDISQALIQMLQGLTSVVSGLAGVSNMMADRHARKYKPAKHHAVVSVNASKTVADFIFETFSYQLSKGSIGLQTSQTISADEAADPGISKS
>NC_019741.1|WP_015186315.1|30546_31878_+|restriction-endonuclease-subunit-S
MTAIDDLTRLMQKHKKDGWRKVKLKEVCREITVGHVGSMAKEYVDEGIPFLRSQNILPFSLELSSVKYVTPEFHGKLRKSALSPGDVAVVRTGYPGTACVIPSKLSISNCADLVIIRPSEEVNAKYLTCVFNSTWGQGTIAGTLVGVAQQHFNVSAAKEMEVNLPPRQTQDKIAAIIYNYNDLIENNTRRIEILEEMARSLYRQWFVNFRFPGHEQVKMVDSEFGLIPEGWEVTSIGNHINTQKGYAFKSIWYQEEGIKIVKVSDFTNDSIDISKLVSISEEIAGQYKKHELEANDIIIQTVGSWASNPQSVVGKVIRAPKIAAKALLNQNAVKVIPKESINQVFLFYSLKNERFKSYIIGCAQGAASQASITLDAIREFEVLLPPISLLNSFDSFVQPVWALINNLEEKKNNLRYTRDYLLPKIISGEIDLEKFEKNLEGVA
>NC_019741.1|WP_015186314.1|30242_30560_+|nucleotidyltransferase-family-protein
MSETKQLPVAIPKEEIEQFCQRHHIRKLSLFGSVLRDDFTPESDIDFLVEFEPRKTPGFFKIVSMEMELSELLEGRKIDLRTPNELSIYFRDRVMDEAVVQYDSN
>NC_019741.1|WP_015186313.1|29927_30233_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSRYLISPSASRDLNAIADYFLTRNVDAGERLFHEFTKKCQYIAQFPNLGKSYSYLRPSLRGLPLDGYIIFYRVVEDGVEIVRVVSGRQDLESLFSESDDG
>NC_019741.1|WP_015186312.1|29664_29931_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MNISLKPEHEQFIQSQVASGRFANQEEVIDIAFRLLEKLYGEYEQWIEETRNKIDIGIAELDRGEGLDGETVVAGILERFKKARQEQE
>NC_019741.1|WP_015186311.1|28060_29656_+|SAM-dependent-DNA-methyltransferase
MPANYTEIEKRLWEAADELRANSKLKPSEYSVPVLGLIFLLYADYKFALVEQEIAAGRMSRRRTVGKTDYQAKGALFLPETARFDYLLNLPEAEDIGGAINAAMKAIADENEELGGALPRNYNSLEKPILRELLKIVNRISREGITEDAFGEIYQYFLGNFAQKEGQKGGEFFTPTSLVKLIVEVIEPDYGMILDPACGAGGMFVQSAVRIRNKLNQDPNKVISVYGQEKVDGTVKLCQMNLAVHGVSGLRNIRQGNTYYEDIHNSATYDKDAQDSIGAFDFVMANPPFNVNGVDREKIKGDPHYPFGVPSTDNANYLWIQLFYSALNQNGRAGFVMANSASDARGSELEIRRQLIEKGAVDVMIAIGSNFFYTVTLPCTLWFLDRGKVKTPRKEKVLFIDARHIYRQVDRAHRDFSEQQVEFIANIVRLYRGEAVEVTGAESKMLAETFPEGAYRDVAGLCKVATLAEIEAQGWSLNPGRYVGVAQRKEAEDFDFAERLEELNEELEILNVEARELEERIAENVAQLLNL
>NC_019741.1|WP_015186310.1|26773_27925_+|50S-ribosome-binding-GTPase
MAQTAADNWNESSFFESVEAKFEEKVPDFSKTLNIAIIGRVSAGKSSLINALLKRSRKKALAEVGAESGVTTNLKVLRLDERVRLIDSPGLDDVRSENSDVTREFLKRIDVGILVVSGSSDASQKKYLVDLQEHCDSVFIVLNKIDDYDRFARPNGDNPALEKVVDQWKQDLQIQKIYPVCAFGYDQDLPPDIPLDIRGVYGLREDIENFLASKGKDLLLARHMGDKESYAKSIIAAALVAVTGEAFLPGSAAFITATQVAAIASLYYLYTGEILSPKAAIAILPTFIAESARGNLFLWVQSFLPPNGITNLAAAGIAMSITLAMLTTVKFVLASGAKLQEEELLKSKFQYFRKKAENSVKNLALSEWNDREAWKGMIDAINQ
>NC_019741.1|WP_015186309.1|26444_26687_+|helix-turn-helix-transcriptional-regulator
MPVTESKLTAVLVKETRKRLGLTQLQFAQSLEVSFQSVNRWERSKTKPLPIVLKQIEVMVKEMGERGSDLVAKYFSVNEN
>NC_019741.1|WP_015186308.1|25739_26105_-|PadR-family-transcriptional-regulator
MAKKNTTNTPLTPAVFHILLALSTQERHGYEIMKQVENDSQGKVKMGPGTLYGSIGRMSEAGLIRESDKKIDPKMDDERRIYYEITGLGKKALAEELERYRSVLMVAQQKRIFPNTFTYDI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019741_1	1.1\|36462\|53\|NC_019741\|CRISPRCasFinder	36462-36514	53	NC_019741	Microcoleus sp. PCC 7113 plasmid pMIC7113.05, complete sequence	36462-36514	0	1.0

1. spacer 1.1|36462|53|NC_019741|CRISPRCasFinder matches to NC_019741 (Microcoleus sp. PCC 7113 plasmid pMIC7113.05, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcgggtgagggcgctggcgttggtgagggcgctgtcgatgacgcgggtgag	CRISPR spacer
tcgcgggtgagggcgctggcgttggtgagggcgctgtcgatgacgcgggtgag	Protospacer
*****************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_019738_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_1

391780-391877

Orphan

Consensus_repeat	Method
GCGCGTTTGGCTTCGGCTTCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_1

>merge|NC_019738|1|391780-391877|CRISPRCasFinder
GCGCGTTTGGCTTCGGCTTCTTTTTGTTGACGCTGCTCAAGAGCTGCCATCTCCGCCGCTTCTGCTAGTAATCGAGCGCGTTCGGCTTCGGCTTCTTT

>NC_019738|1|1|391780-391877|CRISPRCasFinder
GCGCGTTTGGCTTCGGCTTCTTT	TTGTTGACGCTGCTCAAGAGCTGCCATCTCCGCCGCTTCTGCTAGTAATCGA
GCGCGTTCGGCTTCGGCTTCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015180436.1\|394484_395681_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NC_019738.1\|WP_015180427.1\|381881_383441_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019738.1\|WP_015180444.1\|406582_407566_+\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|180321
NC_019738.1\|WP_015180425.1\|378986_381578_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224142
NC_019738.1\|WP_041779852.1\|404111_404297_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180443.1\|404324_405209_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019738.1\|WP_015180441.1\|403379_403874_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019738.1\|WP_015180433.1\|389186_390014_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NC_019738.1\|WP_015180440.1\|401659_403372_+\|DUF87-domain-containing-protein	unknown	unknown	gnl\|CDD\|223510
NC_019738.1\|WP_015180438.1\|396147_397821_-\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	unknown	unknown	gnl\|CDD\|225451
NC_019738.1\|WP_155897901.1\|386124_386343_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180428.1\|383775_385383_+\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_019738.1\|WP_015180435.1\|393964_394183_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180429.1\|385643_386072_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NC_019738.1\|WP_015180424.1\|378355_378781_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_172642264.1\|399583_400516_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NC_019738.1\|WP_015180432.1\|386656_389167_+\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|273193
NC_019738.1\|WP_015180431.1\|386339_386528_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180442.1\|403903_404113_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180423.1\|377286_377991_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|224351

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015180436.1\|394484_395681_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	4.1547e-36
NC_019738.1\|WP_015180433.1\|389186_390014_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.25102e-29
NC_019738.1\|WP_015180444.1\|406582_407566_+\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|180321	PRK05949, PRK05949, RNA polymerase sigma factor; Validated.	0
NC_019738.1\|WP_015180425.1\|378986_381578_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|224142	COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	6.76592e-60
NC_019738.1\|WP_015180443.1\|404324_405209_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.70035e-36
NC_019738.1\|WP_015180441.1\|403379_403874_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	6.07712e-16
NC_019738.1\|WP_015180427.1\|381881_383441_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.00317e-61
NC_019738.1\|WP_015180440.1\|401659_403372_+\|DUF87-domain-containing-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	5.89662e-49
NC_019738.1\|WP_015180428.1\|383775_385383_+\|FHA-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	7.67411e-71
NC_019738.1\|WP_015180429.1\|385643_386072_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	1.07041e-44
NC_019738.1\|WP_015180438.1\|396147_397821_-\|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF	gnl\|CDD\|225451	COG2898, COG2898, Uncharacterized conserved protein [Function unknown].	8.01433e-123
NC_019738.1\|WP_172642264.1\|399583_400516_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	5.96813e-15
NC_019738.1\|WP_015180432.1\|386656_389167_+\|DHH-family-phosphoesterase	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	2.97827e-174
NC_019738.1\|WP_015180423.1\|377286_377991_+\|YdcF-family-protein	gnl\|CDD\|224351	COG1434, COG1434, Uncharacterized conserved protein [Function unknown].	9.7902e-15

>NC_019738.1|WP_015180433.1|389186_390014_-|thioredoxin-domain-containing-protein
MYRSQLLANPFISLRRLAQKALALAGLLLSGLVLLTWSLPAQAASQVSPLVEEQVLQVIRKHPEQILQLIREHPEVIVQSVQGYQQQQQSQLQQIRQAFVQALQMNPKIVIRDSPTTGASDLKVVLLEFSDFQCPYCAQAHKIIQQFMSKHADEVTLVYKHFPLTPIHPEAMPAAKAAWAAFQQGKFWEYEDALFSQQDKLGNSLYVATAKSLNLDLEKFEQDQANADRAIEEDIQLAQTLGLSGTPFFVINGEAFSGDVKLSDLEKALTGASQS
>NC_019738.1|WP_015180432.1|386656_389167_+|DHH-family-phosphoesterase
MPEPQLQWQVSPPSEIPPWFLDAIKPHLPAQVLGDRDGHHAAQLLWKRGIRDVLSLPGFLNPDFYQPANPFEFGQEMQWAVERLQQACRTGEMVAIWGDFDADGITSTAVLWEGLGQFLPQEWQLIYYIPNRLTESHGLNHQGIDALQKQGCRLIVTCDTGSTNLKEIDYAQTLGIDVIVTDHHTLPAQRPPVKAIINPRYFSPDHPLFHLSGVAVAYKLIEALYQTLPDVPQQPLENLLDLVAIGLIADLVQLSGDCRYLAQLGIRRLQQQSKTQNPKSKITRPGVARLLELCQRNGDRPTDISFGLGPRINAVSRIQGDASFCVELLTSTDEKRCEQLATETELANTRRKSLQKDVTQQVKAKLEQLDLSTTSVIVIEDSQWPAGVLGLVAGQIAQEYGRPTILLSTENEVDNQLENKAQEDTIIESQSQSDPPKFARGSARSVNNIDLYQLVKSQEHLLHRFGGHPFAAGLSLPIENLPLFTEAINQQLRQQVSTTGASLTPVLEADLIVTVAELGKELFYELKLLEPCGMGNPVPKLLIQNCWFEEVRNYNTQDFKGRKVQFIKTEFEIWDNSCHTGFHGIWWGHYRDEVPKGRCDAIVELDYNNYKKRPEVRLLAVRSRVDLSSFSIPTRLDWILDWRGADEEIESQSFTGKAARLSEEGHQEMENNPHPKSIDPLTVSECPTSWDELQIWFRRAIASERKLALAYPPPSPLSPGEIWKQLVGIAKFLSRTGQTATLVQLQEKLDLSDRILHLGLDAISHLGFYVKHKDWAIAISGQPSLEVTDSVANEAIQKFLAAVEEEQFLRQYFYQVPLSTIQSQAWQITLNERLLA
>NC_019738.1|WP_015180431.1|386339_386528_-|hypothetical-protein
MDSNRSEVKQMATQLLAAMISNPHIYPKVSDESIQGQRERTLILLAVEMAEALIEKVESRIQ
>NC_019738.1|WP_155897901.1|386124_386343_-|hypothetical-protein
MTAFTQLMIQGFTFSLSSRNLSGRREQDMGLSSRCTLMTALSNSLRVFSWKAIAHNTLAEAIAPSTKPIVFR
>NC_019738.1|WP_015180429.1|385643_386072_-|peptidylprolyl-isomerase
MVQAKSGDTVKIHYTGKLDDGTVFDSSVNREPLEFTLNQGQVIPGFEEAVMGMTPGESKTQKIPVDQAYGPYREEMVIQVNREQLPPDLEPEVGQQLQVQQPNGQAVPVFITEVSNGKVTLDANHPLAGENLTFDIQLVEIS
>NC_019738.1|WP_015180428.1|383775_385383_+|FHA-domain-containing-protein
MAELKLRLKRGNTEKTISVNREEFTIGRLPECNLNLPFEGISRYHARLLKTASGVWTIEDMGSKNGTLMNKRPVISPEKIKDGDVIWLGDISLAVILVEPPQANARQVESSEKGATILHNVQELQQHWIQANADRDDISNKDKTIARLKDLVEIAKSLSAAESIEAIFFQVQEVVFRYLKSIERLALLIDVSGAGELELLNAATRNVFQQENLSPDGSWISQTICQKAFTEKVAIQTADAQVDQRFEGQQSILLKNIGSAMAVPLWDENKVVGVLYADAHFSSMQWAKEGEEDLSFFSTLANLVASSVQRWLLQQKLRSEEMIRQRLERYHSPAVVQQLISVGALPDGRLSPQESEISILFADIVGFTALSERLRPAEIAHLLNGFFEEMLQEVFAMGGTLDKYIGDCIMAFFGAPEPQKDHADRAVAAAQGMLTRLENLNANQVLREPLQLRIAINSGKAVVGDVGSSQRVDYTALGATINLASRMEGICPPGECVLSEATYQMLAQKQGFEEMGEHRFKGIDRPIPVYQTKRR
>NC_019738.1|WP_015180427.1|381881_383441_-|protein-kinase
MIGALLDQRYQVVRVLGQGGFGHTYIAEDTRRPGNPTCVVKHLKPASRDPEFLQIARRLFTREAETLEKLGNHDQIPRLLAYFEENQEFYLVEEFIDGHPLNVELEPSQPWSESQVIQLLQEVLYILDFVHTNGVIHRDLKPENLIRRKHDNKVVLVDFGAVKQVQMQSIVAQELVKETVAIGTPGYMPSEQGQGRPRTSSDLYALGMIGIQALTGMNPTQFGEDPDTGEIIWQQYAQVSDALAAVLAKMVRHYFKYRYQSATEALQALEPLANPNAAKAFAAIASQRVRYYLRDGYQSASKVLQTIQNISALKTRQAIATLKSLPSGQAALPSSNLMEETATVPPVQPSRSPMGVGSFSTIPSKLPLILGTSAVTLVIAAGIFSMVRPPSPSAVTTTNKTNAIPDPNKSNSTPEPNKSNSTSTPNQSDPKPEPEKAQDPNGCTFTMRRASNVRESPRSKKTGEVIKSGIQLTVTGKEENGYIEISSPVQGWVYKNRTKKTCPKPNKADAKKSASSKEN
>NC_019738.1|WP_015180425.1|378986_381578_+|sigma-54-interacting-transcriptional-regulator
MTFPNWVTWLKERTAFGILSEDVINALAQVMEERVVPGNTRLVIEDTPVEYLYILQQGRIESDRANQTSSAWAISWLPGAIIHLQELLFDQSAQRTVKTLSECHLWVIPAQQFQELLSQYPEIAQAFSPQLAAELAKLSSQLSYEQERQAILRPYLVSRAKRGIIGKSRYAVRLRQQIKKAGEDRQSALVFGEPGLEKDNIATLIHFGSAYRREPIIKVDCSTVQASGAELFGRAGGKPGLIEALGQGTLILNNIQELPSELMPTLANLLETGSYTPVEREQGNNREEPNPKSKIQNPKLQCQAHIVMISEKAQPDIEHRVSHLIKVPPLRVRKVDISDQMDYYISLWCRSKGSSKPRVTPEALRRLQAYDFPGNLRELQNLLERALVQLGTAKELTEEIVWPSQSKKKQFRLNLLNAYPRLRRFLRGEWWPDRINYGFTLWFFALIVTLGFVGPQNRQENFTLNLFWAWWWPLILVGFPFVGRLWCAVCPFMIYGEITQKLSLWLWPRQLKRWPREAAEKWGGWFLFGLFVLIFLWEELWNLENTAYLSACLLLLITAGAMIFSAIFERRFWCRYLCPIGGMNGLFAKLSMTELRAQQGTCSAECTTYQCYKGGSQKGEGLETAGCPLYSHPAQLEDNRDCVLCMTCLKACPHRSVEVNLRPPGIELWTTHNPRTYEVALLLLLLGGIFLHRLPEIQAELGLSLNLQDFWQHFGLSLFVLAIPATIPLIAYGGKQLFYRLIQALKFPIPNPKPKPFVELAYGYLPLVLAGNLAHYLRLGLSEGGRLLPVTLATFGLSGEGLPVFVAHPAVIAFLQGVTLMVGVVLTIFLTQKIACQPVRSLLAQHFASVILCICLWVIIVGY
>NC_019738.1|WP_015180424.1|378355_378781_+|hypothetical-protein
MIKINIWVFFSFYVIYALLSVPLFLSTSDGWLAVFLYLIFGSTYYIVSSILLFLSATFRTRRGRTKVKVNLNLLSKIIGFQVFVVLFNYRTCGDSLCYQGFLPSLLEENSIPMVITPPFVVVVFALLLYLILLSLFLLDVA
>NC_019738.1|WP_015180423.1|377286_377991_+|YdcF-family-protein
MRGRLIPRNWVNFKNWFRAKGRRLLSTSLLILGILLGSWLLINTVRLQVVASEPVDVFFVLGGGIDREIYVAQLAKQHPEVRVLISQGSEDPCILLIFQREQAPIRQVWLEKCADSTFDNFYFNIPILKQWGVRKVKLITSSSHLPRSQWMAQILLGAHGIWVETDIASHQGTPGNRESVLKGGLDISRSLVWAVVSQVVQPRCLKLVPLSAVDLEAWRNSGFRCERQQELKLE
>NC_019738.1|WP_015180435.1|393964_394183_+|hypothetical-protein
MASHDLAEHLNQKLWLVEQQSRNNLSSVEMPKRMTAGITINFYVELLNSVKSSVTFNASMFSVFAEFNVKLC
>NC_019738.1|WP_015180436.1|394484_395681_-|alpha/beta-hydrolase
MFYPIRAVLPWLALLLSSISLFLSSWIVIPVPTMSLLPLGVGTPEVSPWLVVLNVIAVGVSWFGGHEGWLQRGTLGASLLGLFLSLLPLIQLPATEQQMSEVMHDTLGANYEQQISPSVQNQLRPHPFILADAFRGIPQMPVRYTPDIPFAAPDGVPLNLDLYRPPQVGQYPAIVIIYGGGWQSGSASHYANFSRYMAHQGYTVFAIAYRHAPRYQFPAQLDDVRAALTFIQQHATEYETDITRIALLGRSAGGHLAMLTAYQPDALPVRAVVSYYGPFNLTNGYKNPPKPDPYNVRAVLEAFLGGSPDEQPEKYVQASPVTYVTRPLPPTLLVHGSRDHIVQVRFAQNMHQRLLAANSKAILLEIPWAEHAFDAIFHGPSNQLALYYTERFLAWALQ
>NC_019738.1|WP_015180438.1|396147_397821_-|bifunctional-lysylphosphatidylglycerol-flippase/synthetase-MprF
MLTRRTQIGVWTAAFLTSLVGVVNLLSAVTVSEWARVKWLKGIFPFEVRQGGHLFAALTGFFLLMLASNLLRRKRIAWLLTVGLLIVSIISHLLKGFDWEESLLSLVLLVQLLLMRDIFTAQSDRPSIAQGFRILIGALLFTLAYGTAGFFLVDLRHYDYNFTLTDALYQTLAMFFTEDNAGLVPRTRYGRFFANSIYLVGGVTLSSALIMLLRPVLLRGEPATPEERQRAKEIVKQYSRSSLAALTLLKDKAYYFSPSGRSVIAYVPKGRGAIALGDPIGPEDDRKEVIIGFQQFCQRNDWHPAFYQTLPDDLELYRALGFHTIKIGEEAIVDLKAFTLQGKAAQDMRSALNRMKKLGHEVKFYQPPISDQLLQELKPVSDEWLKMTQGSEKQFSLGWFYEDYLRDCEIAVVQAADGQISAFANLIPEYELNKTTIDMMRRRVEVEQGTMDFLFSSMFQHFKERGYDRFNLGLSALSGLGEKPQSPRLEKALNYLYEHLNQFYNFKGLHAFKEKYKPQWEPRFFIYPRRVALPEVVVALIRADSGDRLLDYLKPGE
>NC_019738.1|WP_172642264.1|399583_400516_-|esterase-family-protein
MKLRTLLITGIGIVALLAGAGYWYVFIAGAPQLDAPPTEAKDSKIKLFFELKTFNSKAMGEVRQYGVILPPGYEKNPNKHYPVIFLLHGGHDDANAWVKKIGIIPVLEDLYESGKLLPSIVITPDGNDKRGSSPLFDPQYYDGPNGNVGTLIGSELVQMLKSRYRTLESPQFWAIGGLSSGGWGAVNIGLHHRNTFHTMFSQIGYFTDQSGPENSPQSLIKKIPVKERKLLHIYMDAGKDDLMGKEFLDSSQKFHETLNELGIDNEFHAFPGGHGLQGPDYGWNYDHKHAHDSLSFVGRQFKKALTQPKN
>NC_019738.1|WP_015180440.1|401659_403372_+|DUF87-domain-containing-protein
MDLDKPLGSVIQGSLSAGLEVRLHPDIWVEDMRVGKFLVVQGMRSRFFCMLTDVTLGTSSQRILANPPSPDDDFLREVLAGSGTFGTVNLTPMLMFTPQDLSHQSRGVALNGDSSLGSFQSQSSEEMELLPVKTIPSHFSQVYDASDRDFRAVFGWEDDPTRRNFAIGNPLDMEVPICIDLDRFVERSNGVFGKSGTGKSFLTRLLLSGIIRKQAAVNLIFDMHSEYGWEAVSEGKQFSTVKGLRQLFPGQVQIYTLDPESTKRRGVRGTQELYLSYDQIEVEDIMLVRGELNLSEASLENAIILRNEFGKSWITQLLNMTNEDIQMFCDEKRGNKSSIMALQRKLLRLDELKYMRSACPHNYVGQILQSLEAGKHVVIEFGSQSNMLSYMLATNVISRRIHASYVKKAETFLQTKNPSDRPRPLVITIEEAHRFLDPATVRQTIFGIIAREMRKYFVTLLVVDQRPSGIDNEVMSQIGTRITALLNDDKDIEAIFTGVSGGQSLRSVLAKLDSKQQALILGHAVPMPVVVKTRPYDQTFYAEVGDTSWDEMPDEELFAAAEVAKADLGF
>NC_019738.1|WP_015180441.1|403379_403874_-|Uma2-family-endonuclease
MKWQEVCDNKYLQDLPFKIELNKWGQIVMSPAKPKHSIYQGLIQELLNSLLNTGFAFPECAISTSDNVKVADIVWASDERLNIIENEDVASIAPELCVEIKSASNTLEEMQTKKDLYFEAKAEEVWVCDKNGNLTFFNKHGKLDKSLLVPDFPTSIRRRHQSVN
>NC_019738.1|WP_015180442.1|403903_404113_-|hypothetical-protein
MSYCLNPNCLSPQNPDDAKCCQRCQSRLLLKDSPFWSIILANAYQDEKNKWYWALRPQVAEALEELGWV
>NC_019738.1|WP_041779852.1|404111_404297_+|hypothetical-protein
MLEGSREVYFYFALFKNMMLDVVSKNVILPQYKTIALHLFTAMTREGDYPKGSAPKSDRTP
>NC_019738.1|WP_015180443.1|404324_405209_-|pentapeptide-repeat-containing-protein
MNIRKLLRLYDQGDRDFEGVDLCGADLRGVLLMGVNLKGANLRGADLTRAFLIKSDLSGAQMNWANLSFVKMNEVKLIETELTRANLSGAFMVKSLLPGAKMSGADLMGANLRGANLWGANLCGSQLERVNLRDANLMGVNFKWANLSEARLMGAMLYGSSLNFANMSRAWLKGVDLGGFNLEGVNFRRAKLTAATLEGANLTGANLTDAQLNRVNLQGADLSGANLERACLEDANLTGAILRRTQLSEANMSGTKLYGVDFSDVRHSVGIESELSDCPKGSAKGDRAFYSAAV
>NC_019738.1|WP_015180444.1|406582_407566_+|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MPTANTKTKTTKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDEATLNKIVSQGTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQKFGRNATPAEIGQELDLEPAQIREYLSIARQPVSLDVRVGDNQDTELSDLLEDDGQTPVNYTTQESLRQDLDDLLAELTPQQREVLALRFGLEDGNELSLAKVGQRLNLSRERVRQLEHQALAQLRRRHANFREYIAS

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Crispr_ID: NC_019738_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_2

819238-819334

Orphan

Consensus_repeat	Method
CCCCCACGTCAGGCTCTCAACACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_2

>merge|NC_019738|2|819238-819334|CRISPRCasFinder
CCCCCACGTCAGGCTCTCAACACTCCACTCCTACCATTGCCGCTGGCACCGAACCTTTCCCCCAGCCCACTCCCCCCACGTCAGGTTCTCAACACTC

>NC_019738|2|2|819238-819334|CRISPRCasFinder
CCCCCACGTCAGGCTCTCAACACTC	CACTCCTACCATTGCCGCTGGCACCGAACCTTTCCCCCAGCCCACTC
CCCCCACGTCAGGTTCTCAACACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015180800.1\|828383_830231_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_019738.1\|WP_155897918.1\|830377_831313_+\|ATP-sensitive-inward-rectifier-potassium-channel-10	unknown	unknown	gnl\|CDD\|375232
NC_019738.1\|WP_015180794.1\|822015_824193_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|270916
NC_019738.1\|WP_015180798.1\|826774_827233_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041779878.1\|814505_815249_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180796.1\|824651_825830_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NC_019738.1\|WP_155897917.1\|820439_820751_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180786.1\|815513_816077_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_015180790.1\|817701_817947_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180787.1\|816232_816799_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_155898144.1\|821068_821746_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NC_019738.1\|WP_041779880.1\|817291_817495_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180781.1\|811320_812421_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NC_019738.1\|WP_041780417.1\|827619_828360_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_019738.1\|WP_015180780.1\|811132_811228_-\|cytochrome-B6-F-complex-subunit-VI-(PetL)	unknown	unknown	unknown
NC_019738.1\|WP_015180784.1\|813995_814370_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
NC_019738.1\|WP_015180795.1\|824313_824568_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041779879.1\|816897_817146_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019738.1\|WP_015180783.1\|813431_813683_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180797.1\|826110_826473_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015180800.1\|828383_830231_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.77184e-94
NC_019738.1\|WP_015180781.1\|811320_812421_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
NC_019738.1\|WP_155897918.1\|830377_831313_+\|ATP-sensitive-inward-rectifier-potassium-channel-10	gnl\|CDD\|375232	pfam17655, IRK_C, Inward rectifier potassium channel C-terminal domain. This cytoplasmic C-terminal domain has an Ig fold.	2.56409e-38
NC_019738.1\|WP_041780417.1\|827619_828360_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.40161e-16
NC_019738.1\|WP_015180787.1\|816232_816799_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.30074e-34
NC_019738.1\|WP_015180794.1\|822015_824193_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.96932e-65
NC_019738.1\|WP_015180784.1\|813995_814370_+\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	9.37851e-06
NC_019738.1\|WP_015180796.1\|824651_825830_-\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_019738.1\|WP_015180786.1\|815513_816077_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	5.22017e-40
NC_019738.1\|WP_155898144.1\|821068_821746_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	7.57409e-43
NC_019738.1\|WP_041779879.1\|816897_817146_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.28527e-13

>NC_019738.1|WP_015180790.1|817701_817947_-|hypothetical-protein
MDIVNWAPRDCSRQMTDRMYFTMAGMYNQATQSRRSDPDFFTSIGLDLDKTPDVLRFERLFYLGFQFNFEVTVWRGSGKTG
>NC_019738.1|WP_041779880.1|817291_817495_+|hypothetical-protein
MDSRDSMSYKERLQAWTIVRLLPDMQRTIVGRFRHRSDADGHVHFLRQQIPNASFVVVFDSQSGIEG
>NC_019738.1|WP_041779879.1|816897_817146_-|helix-turn-helix-transcriptional-regulator
MSARKSSQQPEENDSPLKRLREQANLTQEQLSVGLGVSTSTLRRWENGDVEPAMTREQWAVFCELLGVPFEQLPQKLNLRSQ
>NC_019738.1|WP_015180787.1|816232_816799_-|Uma2-family-endonuclease
MTISTEKKVWTDEEFMALSKDGHRYELVNGALVDMGNSGMEHGGIGSLLGGLLAIYVRQQKLGTVCDSSTAFTLKNGNKRSPDVSFVSREQLKGLKRPPRGFFQGSPDLAVEILSPSNTVEEIHDKIVEYFENDTRLVWVIHPDEKYVLVYHSPEPDRFLRPQDALEGEAIVPGFSMSVAELFEEWDF
>NC_019738.1|WP_015180786.1|815513_816077_+|Uma2-family-endonuclease
MTTVLNLEPITTLTREQFFQLCQANPDLQLERSPQGELIIVTPIGGEGGNQEASLIAKVVIWNEQTQLGVVFSSQTVFSLPEGGDRSPDVAWVQLSRWQGLSQEEREGFPPICPDFLIELRSRSDRLKPLQNKMQEYLASGLRLGWLINSKDKQVEIYRMGQEVEVVGIPVVLSGEDVLPGFSLEVS
>NC_019738.1|WP_041779878.1|814505_815249_-|hypothetical-protein
MLGLGALIASTVLEKPASYTPPIEKDSLVEPEPDTKDSDDLLAKERAELEAEKRRLEELRQQEEAAQQRAREQRIASTTQAWKDLLNVYISFNQLNQPGGNKNASDISLLFKNAVNDIASISTANVDPQLVELIDESEDVFTDFYQLIDTYQQQVTEQDSALGADALTACVSSGMEAETPLGALGKCLVGGFAGGASSAIKAEGSRARLDADTAMNIEQLQARLKQIANKLSQMPKYLDSEYGIRLE
>NC_019738.1|WP_015180784.1|813995_814370_+|hypothetical-protein
MAKPSDIDFQPYLTAIATTDEKWWQFYTLTDATGKQRQSKEVAPIFDVGLMVQTVKKEEREQRQEEKIERFSVLEGLRKYAEQQVLLVGRPGSGKSTALARLMLEVVTVSKIKFLVSSNPAVRG
>NC_019738.1|WP_015180783.1|813431_813683_+|hypothetical-protein
MTRIDVTLSVAEIPAHWQPPRYPYGQVIVYNKKFCEIVGRKYISPLSAAGKSDPDIVGWHYAIYETPDALNSIEIHETEVMTS
>NC_019738.1|WP_015180781.1|811320_812421_+|3-dehydroquinate-synthase
MDSVIGVNLPEQSYQIAVVAGGLDDLGVWMSRLKLGKKVLVVSNPVIFKKYGERTLAALKLVGYEVSTCTLPAGERYKTLKSVQKIYDVALENRLERSSTVVALGGGVVGDMAGFAAATWLRGINVVQVPTSLLAMVDSSVGGKTGVNHPQGKNLIGAFYQPKFVLIDPSVLKTLPPREFRAGMAEVIKYGIIWDAELFDKLEAAKRLDQLRYVDEELLSLILARSCQAKADVVGKDEKEAGLRAILNYGHTIGHAVESLTGYKLVNHGEAVAIGMVAAGQIAVQLKMWKSEEAQRQDALIEKTGLPTQLPSGLDIDAIVDSLQTDKKVKDGKVRFILPTQIGAVTITDQVPADVIRQVLRQMQVS
>NC_019738.1|WP_015180780.1|811132_811228_-|cytochrome-B6-F-complex-subunit-VI-(PetL)
MSGVVAYFLLLGGATGVALALFFGLKAVKLI
>NC_019738.1|WP_155897917.1|820439_820751_-|hypothetical-protein
MLPLLISAVSAHPANAINLDDAKSPKFLISQATQAGELAGSINSINGQTVEFAQSNGQTRNITISRRVINRLGLRAGSRIAVRVNSRGVATTVRVIRPIRALG
>NC_019738.1|WP_155898144.1|821068_821746_+|L,D-transpeptidase-family-protein
MIFLLIRQPQTTTPIAVKDTAKISQPQPPAKTPIVAKKTVPTNPPQSPAKTPIVAKKTVPTNPPQSLKPYGKQKPPASKKSSVKRPSQVIDPKSLSKGTHLVIKLGDRRVYVYKNKKLKISYPIGIGKAGWETPTGNYKVMDMQPHPIWEEPWTGKVILEGPDNPLGARWIGFWTDGRNSIGFHGTPAEKLVGQAVSHGCIRMRNRDVVALYEQVKLGTPVTVKP
>NC_019738.1|WP_015180794.1|822015_824193_+|tetratricopeptide-repeat-protein
MKALFKRTNPDQPLGGRYKIIGELGAGGFGQTFLAQDLHLPDHPQCVVKQLKPQVSDAESFQTATRLFDVEARVLYQLGNHDQIPRLLAHFEENQEFYLAQELIDGEPLTQEMKGGQPWSETQVIAFLQDLLPILTFVHEQNVIHRDLKPSNLMRRRQDGKIVLIDFGAVKQVSTQIVNPQTGQTRTISIGTQGYTPKEQLGGNPRFSSDIYSAGIIAIQMLTGIHPRNLAEDDQTGEISWRDRAPHVSAELAEFLDRMVRYDFRARYPTAAEALVALRNLSTSRTQFGPISPPFSEDLGELPTQKRQSSANSHESTGSGLGQAPTNPFPPPQTMESTGSGYEQSATNFLAPSAASSHSQTPSTHTDPTVPVGKFPCPEHSSVSAVPTAVAPQKGGQRRLLIPLSILAVLGTVGATFLMTKTFLSPQFANQTIDRREVPGVSSNPSSGESSVSPTEASSPTASPSETPDETPASPTVASSPTASSEATASPTSTAPSPTASPVATPTSPTPSAAPSAPKSAPASVPTTVKSAPSPAAPQVGEFVKQADRAREAGQFQKAIELYDQAIALNPKLAEAHWGRCYSLNSVQQPDDAIAACNQALAINPNYPEALWSKGSALDQKQRFNESLKLYQQATAVKPNFAEAWNNQGVSLLALDRITEAVTAFDKATALKPGFANAWGNRGAALWKLGRFDDAIVSMDKALQIQPNNPDIINLRQQAREKLGR
>NC_019738.1|WP_015180795.1|824313_824568_-|hypothetical-protein
MASSTPLQGLELVDCARANAKQGIETAAMQCGYGDNLHRFSQELKQACDDMGVTFNELTDLITEQDALIKTEGEIVAPETETIL
>NC_019738.1|WP_015180796.1|824651_825830_-|amidohydrolase
MLSRIKDLAEKLAPRLIEIRRHLHSHPELSGQEQQTAAYVAGVLSSCGIVVQEAIGKTGVIGELVGGTDDRLVAIRTDMDALPITERTCLEFASRKPGIMHACGHDVHTTVGLGTAMVLSQLGEMLPGNTRFLFQPAEEIAQGANWMVQDGAMNDVSAIFSVHVFPSIPGGSLGIRYGALTAAADDLEIFIMGESGHGARPHEAVDAIWIASQVITTLQQAISRTQNPLRPIVLTIGQISGGRAPNVIADQVRLAGTVRSLHPDTHADLPQWVEKIVANVCNMYGARYEINYRRGVPSVQNDLALTQLLEESAKEAWGSERVQILPEPSMGAEDFSIYLENAPGTMFRLGVGFPDKPNYPLHHPEFEVNESAIVTGVVTMAYTIYQYWQKRR
>NC_019738.1|WP_015180797.1|826110_826473_+|hypothetical-protein
MNQDKPNRIDQPEGSQNLYRRPSRPTRPEPKPIQVLDSATNQAGEVFNAGDMIQVTSPWGSKAKAEITDFYQDTEGKAWAHYTPNESREGWDWEGGCILASLLVKAAEAPSESTSVPLPE
>NC_019738.1|WP_015180798.1|826774_827233_-|hypothetical-protein
MFSPLSFEAHQQLANLTWVLQNCRAQVLDSKVACLQARQACQSCNLQLASAHLEASINHVPQEKLLAAFRRRLSKLKQMHRELNLDTIQLDLAALTDEYNATLYHIEVVQEGLMSLIDRYHTYCTAGLLEDFYQFEPKRITTFFEEKFTGVA
>NC_019738.1|WP_041780417.1|827619_828360_+|class-I-SAM-dependent-methyltransferase
MHNEYYKEDLAFIHDVGFADYALKSAPGLLEILKQNQIGEGLVVDLGCGSGLWALELTKAHYQVLGVDLSKSLIAIARQRVPEAEFRIGSLFQADIPPCNAVTSIGECLNYLFDSNNNHQTLIQLFSGIYRALTPGGVFIFDMAEPGQVLQETPTQGFTEGDDWIVLVEKAENREQKTLTRRIITFRKVGGHYRRDDEVHHLQLYDATEVAQELSAIGFQVQMMPSYGHYSLPKAHTAFIARKPTK
>NC_019738.1|WP_015180800.1|828383_830231_-|ABC-transporter-ATP-binding-protein
MSRPRKQSLENLRVPTRGLRQSLSVFRYSGRALELVWTTSHTLTIVLAILTLVAGLLPGAIAYVGKLIVDSVVLASQSGAQTQRWMALRYVGLEAIAVMALAATQRGLTVCQSLLRVLLGQRVNVLILEKALTLDLTHFENSEFYDKITQARHEASHRPLSLVMRTFGLIQSALSLVTYGGLLLNFSFWAVLVLVVAAVPPFIAETRFAGEAFRLFRWRSPETRQQHYLETLIAREDYAKEVQLYQLGSTMLQRYRDIFHRLYDEDRDLTIRRGISGYLLGLLSTATFYAAYAWIVLETIWGRISLGDMTMYLTVFRQGQSTFAGALTSIGGMYEDNLYLSNLYEFLEQNVPKPRGKARQGLIPGDGMRFIDVSFTYPGITKPALRNVSLHLKPGEKLAIVGENGSGKTTLIKLLTRLYTPDSGQILLDGLDLQEWDIEVLRQRIGVIFQDFVRYHFTVGENVGVGDVNHLEDAERWEDASDKGMAKPFIELLPEGFGTQLGRWFKGGQELSGGQWQKIALSRAFMRTGADILVLDEPTAAMDAEAEVRIFNHFRTITQNQMVVLISHRFSTVRMADTIVVMAGGEIIEQGTHEKLLQLEGRYARLFSLQAAGYQ
>NC_019738.1|WP_155897918.1|830377_831313_+|ATP-sensitive-inward-rectifier-potassium-channel-10
MDKKPRPLRPALSGQSLLPTRRENRKKRFDIVSNRRFDVKRIGVSHSHWRDPYHLLLTLDWPQFFLLTVVSYLATNTLFALLYLAGGDCIKNARPGSFLDAFFFSVQTMATIGYGAMYPSTDYANLLVTLEALIGLLGVAMTTGLMFARFSRPTARVLFSRVAVIAPHNGLPTLMLRVANERRNQILEAQIGLSLLRDEVTTEGIFIRRFYDLKLLRSQTRTFALSWIVMHVIDENSPLYGMTPELLEEAKTDIIATLTGIDETVSQTVHARHYYITDEILWNMHFVDIFSHKPDGRRVLDLTRFHDVTPI

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Crispr_ID: NC_019738_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_3

955855-956009

Orphan

Consensus_repeat	Method
AAATTGTCTAACTTTATTATTCC	PILER-CR

2 spacers

The CRISPR arrays of NC_019738_3

>merge|NC_019738|3|955855-956009|PILER-CR
AAATTGTCTAACTTTTTTATTTCATGGTGGAGCGTTGTACCAACCCAGAGAATCGCTCAGATTTAGAAATTGTTTAACTTTATTTTTAGGAAGTCTGTAGAGTGAACGGAAAATCAAGGGTTGTATAACCTTAAATTGTCTAACTTTATTATTCC

>NC_019738|3|1|955855-956009|PILER-CR
AAATTGTCTAACTTTTTTATTTC	ATGGTGGAGCGTTGTACCAACCCAGAGAATCGCTCAGATTTAG
AAATTGTTTAACTTTATTTTTAG	GAAGTCTGTAGAGTGAACGGAAAATCAAGGGTTGTATAACCTTAAATT
GTCTAACTTTATTATTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015180896.1\|951048_951321_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180910.1\|971921_972833_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019738.1\|WP_015180908.1\|968665_970588_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223520
NC_019738.1\|WP_015180893.1\|948235_949843_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_019738.1\|WP_015180904.1\|963829_964741_+\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372577
NC_019738.1\|WP_015180897.1\|951425_952058_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180903.1\|961184_961562_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180900.1\|956429_957104_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225829
NC_019738.1\|WP_015180238.1\|955030_955441_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180895.1\|950388_950634_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019738.1\|WP_172642223.1\|957297_958611_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NC_019738.1\|WP_015180909.1\|970702_971611_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180898.1\|952217_953861_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|379756
NC_019738.1\|WP_076612115.1\|953872_954951_+\|ISKra4-like-element-ISMic1-family-transposase	unknown	unknown	unknown
NC_019738.1\|WP_015180902.1\|958644_961176_-\|caspase-family-protein	unknown	unknown	gnl\|CDD\|334197
NC_019738.1\|WP_015180907.1\|968180_968372_-\|DUF2949-domain-containing-protein	unknown	unknown	gnl\|CDD\|371402
NC_019738.1\|WP_015180892.1\|945997_948217_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NC_019738.1\|WP_015180906.1\|967759_967975_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_081594704.1\|950753_951035_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015180894.1\|949866_950235_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_172642223.1\|957297_958611_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.41837e-59
NC_019738.1\|WP_015180904.1\|963829_964741_+\|IS5/IS1182-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.99054e-40
NC_019738.1\|WP_015180898.1\|952217_953861_+\|TniQ-family-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	2.44729e-116
NC_019738.1\|WP_015180908.1\|968665_970588_-\|hypothetical-protein	gnl\|CDD\|223520	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones].	1.87062e-36
NC_019738.1\|WP_015180892.1\|945997_948217_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	2.9357e-12
NC_019738.1\|WP_015180910.1\|971921_972833_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.17491e-33
NC_019738.1\|WP_015180902.1\|958644_961176_-\|caspase-family-protein	gnl\|CDD\|334197	pfam00656, Peptidase_C14, Caspase domain.	1.73195e-16
NC_019738.1\|WP_015180907.1\|968180_968372_-\|DUF2949-domain-containing-protein	gnl\|CDD\|371402	pfam11165, DUF2949, Protein of unknown function (DUF2949). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	8.41244e-23
NC_019738.1\|WP_015180893.1\|948235_949843_-\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.2616e-15
NC_019738.1\|WP_015180900.1\|956429_957104_+\|transcriptional-regulator	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	2.98212e-05
NC_019738.1\|WP_015180895.1\|950388_950634_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.95231e-15

>NC_019738.1|WP_015180238.1|955030_955441_+|hypothetical-protein
MPRKTSKDIERDKLARFERIKKAIAALEKQQRQILKQGELAPSGAWVARYQVRQNNKKYWYYKLQVPTPYFPCATSEELSKYKHLGKAGTTDHIDAVMSVFRRSVIDEIQKLIRSLDDCLLDITSGAEQEEEKPQD
>NC_019738.1|WP_076612115.1|953872_954951_+|ISKra4-like-element-ISMic1-family-transposase
MTMTPEDKKLLADHIKAIAKILYKNTPQEKIETLEGIETAVRDQVLEHVSPQITFFIGEKTGTESGRIRTIRSCVGRIKITQKQASRLGIEPYRRLSPLLEKCCLLLAANESFQDAENDLKVLTGVEVGHSTHHRQAQKVELSPPNIKQKLTEVCLDGGKVRLRSQEKGKPAYWKEYKTGRLQGIYYGAFFQDNFSLINWVNSQNLARTIYCLGDGHDGVWNLFAQIADDQTRQEILDWYHLKENLYKIQASKKFLEQIEADLWQGVVEEAISKLRKTNYVGATNFISYLRKHRHRLVNYMYFQAEQLSSIASGAVESAVKQIDKRLQIVGAQWKSQNLPQMLQLRCAYLNRQLAPSA
>NC_019738.1|WP_015180898.1|952217_953861_+|TniQ-family-protein
MVSFFPKPYPDEILYSVIARYQIRSGNTSPKVTLRELFNSATTVATADLPSNLNSLSESLQPFSNYTVEVLIERYTLYPFYSVFLPPNRATRVKESLKAECGSDIHTRAGIMASSVTMPRYFRFCPNCLKEDLQKYGEAYWHRLHQTPGALVCPVHAVALPDSIVPVQGFNKHEYQAASPENCLITHNQPIYSNDTLEKFWRLAQDISWLMNSKLSAQEPDWFRRRYIALLIEKGLATATGRVHQKRLLDNFMFFYGREMLEALDSMVDYEEEHNWVFGIVRKHRKSFHPMRHLLMIRFLAGSIEEFFNIDYDYKPFGDGHWLCLNAAANHYLQPVVTELAISLCCDTKKPVGTFRCSCGMIYCRTGPDETEDDKYRIGKIKAYGQVWEQKLRELVEIQRLGLRATARRLKVDARTVNRYALRLNLNTSWQSFQDNEIVQSPEQPEGDVNSTGESETRHRQKWLTLQLEHPEASKTTLRQMAPATYAWLYKHDREWLNQNSPTLKVPVPGASQFCKKAREREVYSRFLLANKGRLGGCCPNCDNLIS
>NC_019738.1|WP_015180897.1|951425_952058_+|hypothetical-protein
MTFVCRPPHHNKSSCQTDEELVEEWLNLVKEVYLAAGEAIARVKGKTTSQQIELLRAQAEKPEHLALIALEALNKVDHTATHQHSRLMNHAILQIDVLRTQLIERLRKSERLPPAIPTSMQPKNQRRLIEEFLTQLVSMSQQEKLALLYRVEGLTSQERARGNWSTRLIARYLGLHKNSYRTVAKIVKDWHKQGIDSNLAPNFQAAELKE
>NC_019738.1|WP_015180896.1|951048_951321_+|hypothetical-protein
MARTQKHQRVLQLHNQMFISPQEFSFRWGIEYEELAEICCVSKSTTYHWLGGQASRREAGEPYQRIMAVADFLLSHAEQIHPLLERWHTN
>NC_019738.1|WP_081594704.1|950753_951035_+|hypothetical-protein
MSPQIPPFGLPENIPETLPQQQFQLGDSVRWRQVPHPDFGRILGVIYTHSASCMATGLHYLVLLDEQSPSRHITSYDFAFEKDIERLNQSSTV
>NC_019738.1|WP_015180895.1|950388_950634_-|helix-turn-helix-transcriptional-regulator
MSQNNQLSIKQRFGKAIRRRRRELDLSQEELAERAELHRTYISNIERGELNPSLETMEKLVKALDITVSALFANYGIEVDE
>NC_019738.1|WP_015180894.1|949866_950235_-|hypothetical-protein
MAEENSIGLAELIEQVKRELLAPSLEGETDIPLLSVDEVELELQVTVKKEGKGAIKIYVLELGGGGSRDDVQKVKVKLSPVINKETLLNLYRKRHPERLEKLVEQNIEGTFKGGGDNVSDQF
>NC_019738.1|WP_015180893.1|948235_949843_-|CHAT-domain-containing-protein
MELFELYLSPVDGTRFKAIVTQSSAGEGETESELPFWEGTQDWRITLIKTLESTSFHSESFSRDREQDWMVAASILASDYSAFHPSFLVNIGKALYQSLFPPGSRVEKALQKSLSVAEDKNTQLHIQLKFEADVVQRSRLADYPWELLHDGQRFLLHHQVSFSRYIAHDTVPPNLPPVEQVNVLLVSSAASDPELGLQRLSKQEQQAIHKGLEKASEAGHIRLSELEYPTLKELRTYLTEHRGDTAPHVLHFDGHGLYGKRCSNQQCRVIHKSIKVERCRVCNSVLPKPQGFLVFENEKGEADYVSAAELGVLLRQSSYSDGTSQTGGVALIVLSACQSGMAVTGESVFNGAAQNLVAQRIPAAVAMQYSISVEAATQFAEQFYWSLGQKNSLAVAVSQGREAMGVEGNQWYRPVLYLRWRDNQGGQLFAISQVDAEINSAAISLTTDLQTNKTSDILQASSSLTASQRRRLQREWDELQELYDLLGQKLRRLRKDLATEVNPAVQLQREVQIEETQRELNKLKSQIDEIEQQLG
>NC_019738.1|WP_015180892.1|945997_948217_-|FHA-domain-containing-protein
MDRDLEIQEQYESLLKKRSLLREAVILETNPAIKLQREQQLKEVEKEIFEFEDKVELLRENRIILNLKGTNNEVHCVFDNNAVIGRSATYGFWIDDDSKEISKLHAVIYYKSKNNAYWIDDLKSVNGTYVNGIKIEEPMQIFVGTQIQLGSSPSFLFEHNKDDLLSQGVLIQHNFDGEEVARYIIAPKGKVLLGTNSNEVVRFPNFREGKSLGSLIRETDGFHFIGTDNEEQLLEHGGELSFDFLRVGVTIPSIVLKETLGETKLTENDLEPSQGGMEPEPKPPGEGDVPPYMRKVNIFCSLFIVGIGIILNFTCFRPNINQIDRKLIDECIAELKNPDSHSWFSAKAASNFPTNKSVKILFTRSLQKDKITEYFLNKSSLFNKKNVEISDYINPDISVESIIRNKINQQNSKDFWLGIEKSNFLGILLWKVTYWHPAPSSAGIPIYSTPIFKWNKTSFLYLPSVFILSVVVLSSRLTRYWIIERYRNRLQQDYDDFQKKRTEKIFEAKSYLDEARKLAQSGKLAQALAKTNELLKSTSMSFPVYKEIIELKKVVLAQIESGGGAITVESLNGINRTLNHSTDASKLLYLRILGTPYAYQAPYGLETISIGRQRRKQNVSDNVGNDVIIRVPGSDKKSLCISRRHLEIQRINTEYFVIDKSGGKTSLNGKILTKNEPSRLQSGDRLLIAGVITLEVLIRVKLSGAKTSNVIRINPPTEVQDNFLIEASIGDMVTEVFDD
>NC_019738.1|WP_015180900.1|956429_957104_+|transcriptional-regulator
MSSQDYRLDLPVPVSGEDLPIPVADAGPQEEKAREKAHLEWSNMASQRHIRDLAVDPVQGDLWLATGGGLLHWQLEKNRFTRYASEHGLPGNSVVAVAVDGLGQVWAASEQFGLSYLKNDIWRPYRILGEIKVSCLTLDSTGRLWVGTASGIYAIKSPDRKPAIELPPAGHPPRAILLRRRYANAVTSSNQRRQVTLNSAPTSLIRPLHLNCYAASPSNNLTAN
>NC_019738.1|WP_172642223.1|957297_958611_+|ammonium-transporter
MLASVGIAQAPQPSPSAQELLAQQERISTDTTFVTLAAIPVFFMNLGYALWSTVLCGEQPGKAIRQHLMILALSIFAFWALGFGLMFGNGNGFIGVEGVLFLSGADNSPAIGDAYQGAYSSMSWAGIPLNIKFLFLVSNVVVSTSILASTFIQRRNPSIVFIFCLLFVCFIYPITGHWIWGGGWLARMGFWDYAGSTVIFSVSGWAALVGVWVFGSDEEPHSKVEDSGGTQSINILYVGFLILCLGLIALNTGSTIGFGDGRSVNHIAITTIASAIGSAIGAIITCWIYLRRQNTTRIIQGVLSGLVAISASCAFVGTAWAVEIGFIASILTFLFLDYLKKSKISDISGLISIHLVGGIWGTLSVSFFAAGESNASNALYSIGPAVGLFNGGLSNGESFQQLFQQLVGIIAAGTFAALVSWMFCLIIKLSTKSDAIE
>NC_019738.1|WP_015180902.1|958644_961176_-|caspase-family-protein
MAKVALLIGVSEYEQGLNSLLAAAKDIEAMRDVLLDPGIGGFTKPNITVLKNPERQTMEEAIYSLFAGRHKDDLLLLFFSGHGIKDDLGNLYLATRRTRKSSNGELISPTAVAARFVHDCMSRSRSKRQIVILDCCFSGAFAEGLSAKDDGTINIREQLGGEGRAVLTSSSSTQYSFEQEGEELSLYTRFLIEGMKTGEADQDGDDVISIDELHEYASRKVKEVKPEVKPEIYAIREGFKIRLTKVPLGDPRQRYQKEVARYGKRGDLTIVSRGILDALRAKLEFSVDEAKVLEDEILEPYRKEFRQKIQRYEQIFTDLLQQEESVSDATRQELQNLQQVLELRNEDTVPIEAKVTAYIQAQKQNLRVYEQSLREALRQEYPLGEVKRSELRRLQLQLELSDADISRIEARLGSEVKEYYKKLRQYKQAFAEAVRHEFPLNEPKRNELKIHQQNLELSDIDVTSVEAQITAEIESYHQKLQQYEQAFIKATQYKQYPSESTRQQLKQTWQILGLNQVDVATIETKITTQIETYQKNLRQYEQEFASAAEQQYPLNSAKRQELRQQQQALNLTAEDIEPVETQIITQIEDHWKKLRQYEQVLISSIQYEYPFTDATREELRQFQKVLELGDGDVARIEKQVIANNNKKLQSGTDSTSDVDSSNQKSTSSVAKTNKKSPQENTSQTSQKDEIYQQKLKKYEQEVASKVNLGLINDDYIRGQLKELQRRLEIKDSDAAAIESRATGSVVETDKSTSIKDIAPRTSASSASKQTVATQSHPDSLIPKRTSTVSVSQNDLSNKFNSNRTLMLLFFVVSSFAIMSGLNPFLDKLSPLANHPSNLQNSKP
>NC_019738.1|WP_015180903.1|961184_961562_-|hypothetical-protein
MVEGSSIKVTINFNDPDLSPEDQEIEVQKLLKQLKELDELESVERILDPNPPEGNKALGGFLMGMLTTEVNPANVRNLIGFLGDRLSGKAIEMEVEANGKKLKVKASSQAELMAAIEAAQKFVTM
>NC_019738.1|WP_015180904.1|963829_964741_+|IS5/IS1182-family-transposase
MSNIPEYLEKNQQESKRLIGLEYEQLQQLIAAAELLHQQKDIEIEQRKVRINKAGGGRRPKLSVKDQIILTLVYLHPEPTFQMLGVQFGVSESTANDIFHYWSELLRELLPASLLEQVKKNPGEYKWVQEILAELELIVDSCEQPIPRPKDYQEQKKFYSGKKKNHTLKNQLIVTPNGQEIVDVIVGKPGPTSDINIWREGQSKLAPTQKFKGDKGYIGEVQIETPQKKPRARELSQEEKQKNREKASERIFVEHVIRLLKIFRVAQERFRLRAKSYQRIILLVCGLVRLRIGTLFINSSVCD
>NC_019738.1|WP_015180906.1|967759_967975_-|hypothetical-protein
MDEDIVASFSGNKQQAKQYDLRFLDCAIAFLLDLTDGSLTHPSRGQVVVIPPDTGFVASTRSAIASFARVK
>NC_019738.1|WP_015180907.1|968180_968372_-|DUF2949-domain-containing-protein
MNSKRLQGLICFLQDDLAIPSTSIDLAVRHLPDTLNLVPMILWQYGLVTLQQLDQIFDWLETA
>NC_019738.1|WP_015180908.1|968665_970588_-|hypothetical-protein
MQVLETIGFDLGHGETAVAKARIESIEPPEMLEINNKKVQITALGWHPELGYLIGEQALIQAGVTQLQISFKKKPNNDLNYRKTILNFLATYYRLLKDSKQIEGGTTSQFFVGCPSGWSVSDREEYQMLLKESGIPLLSVVPESRAAFMQAKEAGKLDYDKLKSAVLIVDIGSSTTDFTLVKSLHEIPIDFGSNHLGASLIDKAIFARTLANHEDKALLEQVFEDYPHHQARCELACRKAKEDYFSNEQLYSHPQSFARGFESINEQIYFIPQVSRVMAQEILNQPLPELEGNSWIQSFREAVNVAKEKLDQQGIVPRVVLMTGGASRMKFTREICEEIFPEPESQVRPDPEPERCIALGLARVGRWDLRASAFKSEINQVFDSKKLKDLIERHIPELIELLVKPLSQGLIDKAIKPGLKDWRNNKIRTLADLEDVMKKQAEDWIKSDRTRQIVNSQCVTWFNSKIQPELAQETDSICRKYQIPRSSLRFEEGINPDVVNPELSIGDTILADTVSFIVNVVIGGGTVGSIIALILTGHLTWPIVLIYGVSVLAAGVEITRSKTQDAIKTKVDVPSWSRPMLLNDSKLDSICEQMNPELERVFREQLTANQEAFDELIAKVGQELKNALNNKAEEAVILIQ
>NC_019738.1|WP_015180909.1|970702_971611_-|hypothetical-protein
MKTLFTLFSKERSELQTEIERASSPEQVVKLVQNRIDNLEKSYIGGLSVTQVRLASFFLDTLRQTIGTLTAANETKFLEPKPQQIDNQATRLPSNRVILKVLQALIGISILGSLFSLTQDTPGAWMDILLMTVLVGLEVVLQIEKGKPENRSDSTQSLGVPQPIVQVDSQILLNNLADALNTIDLAVTSAEPVKKPLDASGIEELPELLNLVQRLMGASFLEKPQMALELTKLLPQILMEQGIRSQLYRPDDAQSRREYFDFEPNIDRSAQDYVTITPALVKGDRLLRRGRVIEPAYSEVRE
>NC_019738.1|WP_015180910.1|971921_972833_-|pentapeptide-repeat-containing-protein
MANPEQLALLRQGVYFWNRQKPESCQIPIDLSDSDLKEANLCGAYFQCANLNRTNLSRANLSRANLSHANLSGARLECVSLSRANLNQADLEGAILFQSNLSQANLIGASLPETDLQVATLFQANLTGACLRGTIFWRSHLMRAVLRRVDFHEAILQETSFRQADLREADFTRVYFSEASLSEANLRGANLDQALVKRTSFWRTNLQQASLKGAYLKRIVFNQTDLSGASFQGAQLQGAVFRGANLTGANFEGANLERAVFRGANLTGTNLKGASLQWAVFKEVNIEQTEGWDSSFNQEALIR

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Crispr_ID: NC_019738_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_4

1265226-1265320

Orphan

Consensus_repeat	Method
AGTACCAGGAGTCGGTGCGGCTGAATTTCCTGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_4

>merge|NC_019738|4|1265226-1265320|CRISPRCasFinder
AGTACCAGGAGTCGGTGCGGCTGAATTTCCTGGAGAGGTATTGGTTCTGGGAGCCACCTGAGTACCAGGAGTCGGCGCGGCTGAATTTCCTGGAG

>NC_019738|4|3|1265226-1265320|CRISPRCasFinder
AGTACCAGGAGTCGGTGCGGCTGAATTTCCTGGAG	AGGTATTGGTTCTGGGAGCCACCTG
AGTACCAGGAGTCGGCGCGGCTGAATTTCCTGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015181159.1\|1275507_1275768_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181141.1\|1253142_1253886_+\|phycocyanobilin:ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|179478
NC_019738.1\|WP_015181158.1\|1274580_1275141_-\|DUF2854-domain-containing-protein	unknown	unknown	gnl\|CDD\|371342
NC_019738.1\|WP_015181142.1\|1253933_1254722_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181150.1\|1266129_1266840_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NC_019738.1\|WP_015181154.1\|1271209_1271887_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019738.1\|WP_015181144.1\|1256657_1257425_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|234910
NC_019738.1\|WP_015181151.1\|1267215_1267515_+\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NC_019738.1\|WP_015181156.1\|1272770_1274258_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|367144
NC_019738.1\|WP_155897939.1\|1260266_1261274_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181148.1\|1264084_1265119_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NC_019738.1\|WP_015181152.1\|1267645_1267849_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181143.1\|1254947_1256609_-\|peptidase-M15	unknown	unknown	gnl\|CDD\|311960
NC_019738.1\|WP_015181157.1\|1274320_1274578_+\|chlororespiratory-reduction-protein-7	unknown	unknown	gnl\|CDD\|371894
NC_019738.1\|WP_015181153.1\|1267894_1271080_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_019738.1\|WP_015181139.1\|1251298_1252507_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NC_019738.1\|WP_015181147.1\|1262031_1263867_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236018
NC_019738.1\|WP_015181155.1\|1272349_1272745_+\|response-regulator	unknown	unknown	gnl\|CDD\|381147
NC_019738.1\|WP_015181145.1\|1257525_1260189_+\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224563
NC_019738.1\|WP_015181140.1\|1252853_1253030_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|224739

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015181141.1\|1253142_1253886_+\|phycocyanobilin:ferredoxin-oxidoreductase	gnl\|CDD\|179478	PRK02816, PRK02816, phycocyanobilin:ferredoxin oxidoreductase; Validated.	1.58846e-159
NC_019738.1\|WP_015181158.1\|1274580_1275141_-\|DUF2854-domain-containing-protein	gnl\|CDD\|371342	pfam11016, DUF2854, Protein of unknown function (DUF2854). This family of proteins has no known function.	7.64089e-97
NC_019738.1\|WP_015181150.1\|1266129_1266840_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	3.29073e-48
NC_019738.1\|WP_015181154.1\|1271209_1271887_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.99071e-83
NC_019738.1\|WP_015181144.1\|1256657_1257425_+\|HAD-family-phosphatase	gnl\|CDD\|234910	PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.	1.99309e-23
NC_019738.1\|WP_015181151.1\|1267215_1267515_+\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	3.47048e-21
NC_019738.1\|WP_015181156.1\|1272770_1274258_-\|YdiU-family-protein	gnl\|CDD\|367144	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family.	0
NC_019738.1\|WP_015181148.1\|1264084_1265119_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	7.70858e-24
NC_019738.1\|WP_015181143.1\|1254947_1256609_-\|peptidase-M15	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	1.11041e-07
NC_019738.1\|WP_015181157.1\|1274320_1274578_+\|chlororespiratory-reduction-protein-7	gnl\|CDD\|371894	pfam12095, CRR7, Protein CHLORORESPIRATORY REDUCTION 7. This entry includes protein from blue-green algae and plants, including CRR7 protein from Arabidopsis. CRR7 is part of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. It is essential for the stable formation of the NDH Complex.	6.65316e-42
NC_019738.1\|WP_015181147.1\|1262031_1263867_+\|aspartate-kinase	gnl\|CDD\|236018	PRK07431, PRK07431, aspartate kinase; Provisional.	0
NC_019738.1\|WP_015181139.1\|1251298_1252507_+\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	1.22559e-07
NC_019738.1\|WP_015181153.1\|1267894_1271080_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.52557e-49
NC_019738.1\|WP_015181155.1\|1272349_1272745_+\|response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.63257e-27
NC_019738.1\|WP_015181145.1\|1257525_1260189_+\|WG-repeat-containing-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	1.11378e-58
NC_019738.1\|WP_015181140.1\|1252853_1253030_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|224739	COG1826, TatA, Sec-independent protein secretion pathway components [Intracellular trafficking and secretion].	7.9376e-16

>NC_019738.1|WP_015181148.1|1264084_1265119_-|endonuclease/exonuclease/phosphatase-family-protein
MGIFNKNPGINPIIGLISYALFLGLIATTLISVVSSLRGNIFLELLSPFKFQYFLLTLFLCGLLLLTRNKKLIIIRLFCLSIILVEIAPWYIPQTGIEINNPTKLRVLSSNVNVENQKYSQVLSLVRREKPDIAVFMEIHQDWVKQLDTLKDILPYSIVKANPYNLGIALYSKRPLEKASFAFLGTTQNPSIVGKLNINGQIVSLVAAHPPPPIKSALFKARNQQLEAIGKYIKSVSTPVLVMGDLNITMWSPYYKRLMSQAGLKNARQGFGIVPTWPLKTDYPPYSKMPVLFTRLFSIPIDHCLISPQIKVAKIRAGSSVGSDHRPLITDLVLPDKKGYINFP
>NC_019738.1|WP_015181147.1|1262031_1263867_+|aspartate-kinase
MSLVVQKYGGTSVGSVERIQSVAQRVLKTAQQGNSVVVVVSAMGKTTDGLIKLANEISSNPSRREMDMLLSTGEQVSIALLCMALQELGQPAISLTGAQVGIVTEAQHSRARILNIHTERIERHLNEGKVVVVAGFQGISSINELEITTLGRGGSDTSAVALAASLKADCCQIYTDVPGILTADPRLVPDAQLMDEITSDEMLELASLGAKVLHPRAVEIARNYGVMLVVLSSWTDDPGTKVVSPSPQPRSLEGLEIARSVDAVEFDTDQAKVALLRVPDHPGVAARLFGEIARRDLDVDLIIQSIHEGNTNDIAFTVVKGILKRAEAVAEAIAPTLRSHNAVNSEEAEVMVERGIAKISIAGAGMIGRPGIAAQMFKTLASSGVNIQMISTSEVKVSCVIDAQDGDKAIAALCQTFDINSSPVQQGLIRKSKETDQALTHPQSPVRGVALDLNQARLAIRYVPDRPGMAAQLFGLLADQNISVDMIIQSQRCRVMDGVPTRDIAFTVSQADAQAAQTVLQQAMSLLGCGEILLDLNIAKVSIVGAGMVGQPGVAAQMFEALAQHQINIQMITTSEIKISCVVSKEDGVMALQAIHKAFGLAGSQKIEVPA
>NC_019738.1|WP_155897939.1|1260266_1261274_-|hypothetical-protein
METERQSLKKKFYQFVMFRLALMIELFRNLKQYFKVALFYQRCDVVKTLGEGQQVKPIPPKVIAVIPHITSVEESQDRQKAVAKIEKLRLTIDSLLASFAHCELTIVIKTVADRHITAYLPEYQINCIQVQEESNLDPMFMGFKCQDEFVKRVDEFDWFLFLEDDILIQDSYLLEKLEKFNTTCGSKRALLFPNRYELWEGTKRYIDLIIDSGLEWNRLSSVEVDGVKFGECTNPHSGFFGLSKDQVKLWIESGREWNNKDLGFGGPRECAATYSLLECFSIYKPHPINLHFFEVRHYDTKYSQLYPELSPDYIFSAIQPKRPVMEEEELTKTLV
>NC_019738.1|WP_015181145.1|1257525_1260189_+|WG-repeat-containing-protein
MLSNSSFSDIQNHWAAECIRQLRSRNVISGYQDGTFRPNNPVTRAEFAALIGKAFANAPLIRTGITFKDVPSNHWANAAIQTAYRTGFISGYPDRTFKPNQPITRVQVLLALVSGLKYTTAAASSTSLQDYYDDAGAIPIYALGAIAAATLKRLVVNYPDVKRLNPNQNATRAEVSAFICQALNIPGIPSKYIAGGSLFVIAPQFDEADSFSEGLARVKTGEKWGYVDKQGQLVIQPKLDEAEAFSDGLALVRTYSTVGSSFTTIREEKVMETRGVWLTTTDSRVFNSKQSITEAMNFLADTGFNVVFPVVWNNAATLYPSKVMKETFGVEIDSRFVGRDPLKELITEAKRVGLAVIPWFEYGFASSYSQNGGPLLAKKPHWAARDASGNLLKKNDFEWMNALDIEVQDFLRSLILEVAKNYDIAGIQGDDRLPALPSEGSYDSKTSERYSRQFNQNPPSNPKEAQWLQWRADILTDFLTRLYQELIAINPNLIISMAPSAYPWGLQEYLQDAQAWIDQGLIDLIHPQLYRRDLEGYKLLVDRMVNQQYKPSQLYALAPGVLLKVGTYRMSAELLLQTIQYNRDRSINGEVFFFYEGLREDNNALAKVLKQGPYAQSAPFNPAIFKTRGFTPRRVGGKYSYINQFGQAVTQPQFDWVDSFKEGLAKVKMGYKWGYIDKTGNRISRLQFDEAELFSEGLALVRVGNKYGYINKLGQLITPLQYDAANSFQEGLAAVKISDKWFYIDTTGKVVLLPQCEEAALFSEGLAAIKLSGKFGYIDKTGKVTIQPQYDQAEAFTEGLARVKVDGKWGYINPLGQMIITPQFDASASFSEGLAAVQSNGLWGYIDKNGLLIISPEFSEAKPFREGLALVQLGNKWGYIRNILSSG
>NC_019738.1|WP_015181144.1|1256657_1257425_+|HAD-family-phosphatase
MVLVPLKQAITNNDWKQPRLIATDMDGTLTQQGTFTASLLQSLEDLSAANIPVLIVTGRSAGWVSGLATYLPVAGAIAENGGLFYPKHSAESVALTPISNLVKHRQQLAQAYQSLKSEFPQIQESSDNRFRLTDWTFDNGNLRVSQLERMNALCASLGWGFTYSSVQCHIKPASQDKAVGLRQVLQDYFPEYATQQVVTVGDSPNDASLFNPELFPFSVGVANVLDYVDELRYQPTYITAASEGEGFCELVQYLC
>NC_019738.1|WP_015181143.1|1254947_1256609_-|peptidase-M15
MATFSPDQRNYYYLIEAERVGIHKPILTALYAAHSSPSLADAETGLGISPANRVSLAQVNTFPQQVQSAANVIRSLSESLLDQGWKGGDLWEAEQGRYTEQFLQKVASGYAPIGSESAIARLEACDWTQLKQAYLTDLAADGKAANLPDNLAYLDRALISLVDGIPDYYVGLPHQRDAILSGVRIWRGLDTREAAIASLVPNAEVTTAMEDESQLDIPLKQFVQGISANYGGYPQQREALIRVVQLWRQMRTREEAIASLKTNSSPEENLTVIDPALIAFVQHLPNSYQGQGSQRHALTEAFRIWRQLDSRATALATLGIQAEQLNASTTDRTEMLNLATQMDRELLRFVRRLPGDYQELDHQREALIRLVQLWRSLPTRNQTIDSLLEDQKRLETVRPSAPEAPPPPIPVVILKRPTHWTPDNLQLFAPIIPDGHFTWADATHGGTQMPPNQATVEAIIRMATLAQRARDRIGRPLIVVNWYRPFDRHGAMGSEASHRYQVGDAIDFICEGLTGNQLYWFLEPWWPGGLGRYTQFPYLCHIDARSYRVRWRN
>NC_019738.1|WP_015181142.1|1253933_1254722_-|hypothetical-protein
MSTSTISMPPALVQAPVKPHSTSPASNATAPESHSLGQPWMFVSIGLVLLLIGLAVYGKLKLDEASKKLKFEQYKTKDLQRKIKLALDTIQKMEKNPDLIHSREFNLDYLRMRMEEEVFHFAIINQIKIKVKQIISVALRPNHKEQTVIGIAGAGRQVDEMFDVMYETESGGKRTLRVLFRIQIILMKLPTQATSATINQIIDCIETFLNPDDDRESWQPTIQGRIVFIRWDQKAKPTPLLVLEQSSEGVNVTLRTKRAGVQ
>NC_019738.1|WP_015181141.1|1253142_1253886_+|phycocyanobilin:ferredoxin-oxidoreductase
MLESSKPSLREQQHPLIRQLADCIESNWQRYLDLSPYELPAEMGYVEGRLEGEKLIIENRCYQTPQFRKMHLELARVGNMLDILHCVMFPRPEYALPMFGCDLVGGRGQISAAIADLSPVNAERILPDAYRHSLQALPTPEFSQPRELPPWGEIFSEFCLFIRPSSPEEEAKFLSRVDDFLRIHCTSACQASPVSVEQKSEILEAQRYYCTQQQQNDKTRRVLEKAFGSDWAEHYMTSVLFDLPIAQ
>NC_019738.1|WP_015181140.1|1252853_1253030_-|twin-arginine-translocase-TatA/TatE-family-subunit
MFGLGLPEVGLIALAAILIFGPKKIPEMGSALGKTLRGFKEEMNNPATEQDDNDPNNS
>NC_019738.1|WP_015181139.1|1251298_1252507_+|hypothetical-protein
MIAKSARYALGFFGLAGSLAFIAAAPAHAQQQPSSSGQDIVNITGGQASFIDGTIFVPGSGTSGSSSLVYGSSVKDGTLRIQTNRGDIPTPILFKEGTVPTLNITAGGTPAVGNTGSVDGNVSFRAFTSDGQPALFVGLPATLEFTLTSVDSTGSNFDSTKFSTPPDYTLITSGGVATSGSSTSTGSAITNVLIFQVQPKDSDPTDQTILGTTIPAADFTDEVEGKSYPTDFDVDLTGGFLTIPTPPGFSATGSSSNNNSNSNSNSNSNNNSDTDFASSTTTFIPEFSGSDEDSIQNVFSTEYQPSSGEPIAEGSDDSGSGRVYRVGENYYVTVGLSSRVFPGLIGVTPTPTPTPTTSPTPTPTPTTSPTPTPTPTPTTSPTPTPTPTTSPTPTPTPTTSPL
>NC_019738.1|WP_015181150.1|1266129_1266840_-|MotA/TolQ/ExbB-proton-channel-family-protein
MDIREIIQKGGPAMWPLLVLSILALGTILERMWFWTSILWRERKIVERVLDAAESNWQAATEMALEGRRQPIGRYLYAPLRLVNPDPEVFRLALEAAADDELALMRRGDKLMEAVITISPLLGLLGTVLGLIRSLRSISFSDLGTASVAGVPIGIGEALISTAAGMIIAIVSLVFYRFFQALWYNQVRIFRKAGSELELLYRQDWLQGEISDTLNNSDTSNSVKLKPAEIPEVSEK
>NC_019738.1|WP_015181151.1|1267215_1267515_+|DUF1232-domain-containing-protein
MNNFPQSIYNWYRNTLRNPKYRWWVILGSLLYIASPIDISPDFIPIIGQIDDVVILTLLVSEVSQLLIDTAKSRKGETVASSTENVTDQTVDVDAVSVK
>NC_019738.1|WP_015181152.1|1267645_1267849_+|hypothetical-protein
MESTINCAEACINGCVLGDQCPNKEFATEASKFIQETSLDRMLEMAEEARRKKMTQPPQWVIPDFPE
>NC_019738.1|WP_015181153.1|1267894_1271080_-|PAS-domain-S-box-protein
MRHKANVNILLVDDQPHYLLELEAILESLGHNLVKADSGEQALRYLLNQEFALILLDVQMPEMDGLETAKRIRDTPNGHHTPVIFIADSSSAQTGESSGETQRKYARGKPSKPHPQSHPSDTEVLKAYALGAVDYLFKPLVPEILRSKVTAWISLFQETQVLRQRTAQLEAAMQQLQQESAQGKQAELALQELNQQLELRVQQRTAELQQANERLQAEVEERRQAAAALRTSEARYKAIVQNSYDIITFTDEQDNIYYQNSTRERILGYPVTESSCKRPAHEVHLDDISKVQAAMSAILAQPGMPVTVEYRMKRADGSWAWLESVATNWLSNPDIRAIVANSRDISEHKQAQEVLRQRTQRERLISASIQRIRETLDLDVILSTTVEEVRQFLQVDRVLVYRIWPDSTGSTIAESVVPGCLRILGHTFPPEVFPPEFHHWYCQGRVRAIVHPETDQVSPCLIDFLKEWGVKSKLVVPIVYQGELWGLLIAHHCSQPRQWQPLEMDLLQQLAIQLAIAIHQANLYQQLQLKLAERKEAENALRQARDQLEIRVIERTAELTRINASLQAEIRERIAAEQALRTSEERFRVALKNSPTTVFNQDIDLRYTWLYNSLFGFSFEQVVGQLDCELFGTEDGQRLTAIKRQVLTTGVGSREETSMTINGEIRHYDLTVEPLLGSNRDITGITCAAMDITEILAREQQLRAIFESSLDAIAIIDNQGTYVEVNPAACQLFNRPLAELLGQSIADLIAPDCDFKRVWRTVVVLGQGRGELRLLRPDGSVRDVEYAAKASFLPGRHLAVLRDITERKQTEEIRRALAAEQELRRVQLRFFSMVSHEFRTPLSTILGSAQLLKSYTPAWTEEKKLRNLSRIETAAKNMTQLLDDLLTINRAESGKLEFHPQPINLEKFCRSLIEDLQLNADPKHQICLTIQGSCPTASVDEKLIRSILNNLLSNALKYSPQGGEIHLVLICSKKEAIFQIKDAGIGIPLEDQSHLFELFHRGKNIANITGTGLGLSVVKQCLDLQGGEISIDSQVGVGTTVTVKIPLASARCSLTQLKMNQ
>NC_019738.1|WP_015181154.1|1271209_1271887_+|response-regulator-transcription-factor
MKVLLVEDDELLAGVIAEFLTDHLHVVEVVTDGESAWNQISALEYDLILLDVMLPKLDGISLCQRLRSHGYSVPILMVTARDTSTDKVLGLDAGADDYMVKPLDFPELLARIRALLRRGSAVSSPILEWGDLHLDPATYEVSYHDNTLRLTPKEYKLLELLLRNGRRILSRNIIIERLWSFEKPPEEGTVKTHIKSLRKKLKVVGAPTNLIETVHGIGYRLKALT
>NC_019738.1|WP_015181155.1|1272349_1272745_+|response-regulator
MKNYSQDLKISTILVIDDNLLFLETLLELLETHGFQVIGSQSGLLGLQLAEEKMPDMIICDIRMPELNGYQVLIKLRQNSLTAKIPLIFITAKPIDQPQKVVQEMGANGYLIKPFSTTQLILTIKAQLETQ
>NC_019738.1|WP_015181156.1|1272770_1274258_-|YdiU-family-protein
MFLSLNYEPALESLGYDYFDEVAAANFPRHILRFRNDQVLPILGLNPEEVTDADFIQAFGKFQGVRPFLALRYHGYQFGEYNPRLGDGRGFLYGQVRGVDGELYDFGTKGSGTTPYSRSADGRLTLKGGVREVLAAEALYHLGVRTSRCLSLIETGESLWRGDEPSPTRSSVMVRFTRSHIRFGTFERLHYFKRPDLIKKLLDHVIEQYYPQITPPASLSKGGEPGKVFKVGETEVGQDECNRYIQFYTELVERVAQLVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYDPAFTAAYFDYYGRYCYGYQPEICRWNLEMLQRPLAAVIPQADMEDALATFGEHYYRNYRQLMINKLGFEQLPESQAEELLGLTIQFLQDSQMGYHAFFAELAQQFNSSWRDNLGQILTGESFLPFTQSVSSLGKWRELYHHILQDLSTDELEHVAQQLRNKNPKTALLRPVIEEIWHAITENDNWQPFYELLNRIQNKE
>NC_019738.1|WP_015181157.1|1274320_1274578_+|chlororespiratory-reduction-protein-7
MRDSIMFQEDAYVVLETNQPEQILTPEELLEKLKAVLSQRQDDLPRDVQKFTALQEQAQYLMETSCELDVGPEGYLQWYVVRLEK
>NC_019738.1|WP_015181158.1|1274580_1275141_-|DUF2854-domain-containing-protein
MLRQTSLGTLGLSIGGILTLMGFVAYATGNATLNLVGFFYGIPILLGGLALTASELKPVPLSQPTPPSVLKLREIQATSTQNQIRKDVMRYRYGQTAHLDSSLESLKLSPTDEERPLLVGLRETEVDGAYTLILEFESPLIPFETWQEKREKIEKFFGPDIRVDLSQAEDNRVDVALIATPQPVTS
>NC_019738.1|WP_015181159.1|1275507_1275768_+|hypothetical-protein
MIKEENQKATKKNSVILDQLNSLQQEDETLYNILAVDVWALAKTMDEFQPGFWSAFMKNREKALKRFISEVIKNKPTNPKRPPFLR

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Crispr_ID: NC_019738_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_5

1574448-1574559

Orphan

Consensus_repeat	Method
GTGAGCGCGAAGAGGTAGAGGATGAGGGTTGCTGGGT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_019738_5

>merge|NC_019738|5|1574448-1574559|CRISPRCasFinder
GTGAGCGCGAAGAGGTAGAGGATGAGGGTTGCTGGGTCGTAGGTTGTTCTGAAGTCGGATCGGAATTGGTAGACTGTGAGCGTGAAGAGGTAGAGGATGAGGGTTGCTGGGT

>NC_019738|5|4|1574448-1574559|CRISPRCasFinder
GTGAGCGCGAAGAGGTAGAGGATGAGGGTTGCTGGGT	CGTAGGTTGTTCTGAAGTCGGATCGGAATTGGTAGACT
GTGAGCGTGAAGAGGTAGAGGATGAGGGTTGCTGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015181407.1\|1559661_1560357_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181408.1\|1560488_1561400_-\|membrane-protease-subunit,-stomatin/prohibitin	unknown	unknown	gnl\|CDD\|259799
NC_019738.1\|WP_015181419.1\|1576377_1576704_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181424.1\|1583500_1583887_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181411.1\|1562907_1563663_-\|sucrose-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|130549
NC_019738.1\|WP_155898158.1\|1567191_1570419_+\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375611
NC_019738.1\|WP_015181422.1\|1582158_1582578_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_019738.1\|WP_015181420.1\|1576763_1579265_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_019738.1\|WP_071884126.1\|1582808_1582973_-\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NC_019738.1\|WP_015181415.1\|1571482_1572322_+\|DUF4231-domain-containing-protein	unknown	unknown	gnl\|CDD\|379418
NC_019738.1\|WP_155897950.1\|1582632_1582791_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181412.1\|1563959_1566752_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_019738.1\|WP_015181425.1\|1584158_1584512_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|227313
NC_019738.1\|WP_015181426.1\|1584522_1585128_+\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|377605
NC_019738.1\|WP_015181410.1\|1562128_1562761_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NC_019738.1\|WP_015181418.1\|1575779_1576319_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198397
NC_019738.1\|WP_015181414.1\|1570624_1571374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375603
NC_019738.1\|WP_015181421.1\|1579896_1581891_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_019738.1\|WP_015181416.1\|1572397_1573660_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NC_019738.1\|WP_015181409.1\|1561406_1561685_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015181408.1\|1560488_1561400_-\|membrane-protease-subunit,-stomatin/prohibitin	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	3.28919e-20
NC_019738.1\|WP_015181411.1\|1562907_1563663_-\|sucrose-phosphate-phosphatase	gnl\|CDD\|130549	TIGR01485, putative_sucrose-phosphate_phosphatase, sucrose-6F-phosphate phosphohydrolase. This model describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). SPP is a member of the Class IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose, contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.	5.74422e-112
NC_019738.1\|WP_155898158.1\|1567191_1570419_+\|SLATT-domain-containing-protein	gnl\|CDD\|375611	pfam18181, SLATT_1, SMODS and SLOG-associating 2TM effector domain 1. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often C-terminally fused to the SLATT_3 family, and is typically operonically linked to either inactive TIR domains or SLOG domains which could act as regulators of the SLATT channels. In relatively rare instances, it is genomically linked as a standalone domain to the RelA/SpoT nucleotide synthetase and the predicted NA37/YejK sensor domain.	4.13478e-26
NC_019738.1\|WP_015181422.1\|1582158_1582578_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	2.43242e-17
NC_019738.1\|WP_015181414.1\|1570624_1571374_+\|hypothetical-protein	gnl\|CDD\|375603	pfam18171, LSDAT_prok, SLOG in TRPM, prokaryote. Family in the SLOG superfamily, fused to or operonically associating with SLATT domain in diverse prokaryotes. Predicted to function as ligand sensor in conjunction with the SLATT transmembrane domain.	2.25773e-83
NC_019738.1\|WP_071884126.1\|1582808_1582973_-\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	1.27559e-15
NC_019738.1\|WP_015181415.1\|1571482_1572322_+\|DUF4231-domain-containing-protein	gnl\|CDD\|379418	pfam14015, DUF4231, Protein of unknown function (DUF4231). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 148 and 288 amino acids in length.	3.6388e-37
NC_019738.1\|WP_015181412.1\|1563959_1566752_+\|TIR-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.36973e-90
NC_019738.1\|WP_015181425.1\|1584158_1584512_+\|YtxH-domain-containing-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	4.8985e-24
NC_019738.1\|WP_015181426.1\|1584522_1585128_+\|DUF948-domain-containing-protein	gnl\|CDD\|377605	pfam06103, DUF948, Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins.	4.49571e-05
NC_019738.1\|WP_015181410.1\|1562128_1562761_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	5.78902e-74
NC_019738.1\|WP_015181418.1\|1575779_1576319_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198397	cd10450, GIY-YIG_AtGrxS16_like, GIY-YIG domain found in CAXIP1-like proteins, iron-sulfur cluster assembly proteins, and similar proteins. The family includes CAX-interacting protein-1 (CXIP1)-like proteins and iron-sulfur cluster assembly proteins, both of which contain a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC. CAXIP1 is a novel PICOT (protein kinase C-interacting cousin of thioredoxin) domain-containing Arabidopsis protein that activates H+/Ca2+ exchanger CAX1, and its homolog CAX4, but not CAX2 or CAX3. Iron-sulfur cluster assembly proteins in this family also contain a C-terminal NifU-like domain that corresponds to a common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	2.7247e-35
NC_019738.1\|WP_015181420.1\|1576763_1579265_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	3.33647e-18
NC_019738.1\|WP_015181421.1\|1579896_1581891_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	6.46379e-47
NC_019738.1\|WP_015181416.1\|1572397_1573660_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.3693e-62

>NC_019738.1|WP_015181416.1|1572397_1573660_-|PDZ-domain-containing-protein
MINFLGSKILKFITIISLIVFIIVWPIFLKVSSAQGSPYQATLNEVWQEVNDHFFDPNFNGVNWKAKRQEYENQLKPVQSLEEASVVINQMLSELKTSHTHFYTKQEPAYYQLLGIFNRGSFRKELERIFSNGKLDYTGIGIFTKDINGKIFISGVIDGTPAAQSGLKVGDEVIAVDGKPYQPIQSFANKAEQEVKVSIQQSPDPKSRKDLTVIPKKLNPNRLFLEAMRESTKIIERDNKKIGYIHIWSYAGDQYQQQLIEEIGFGKLKDADGLILDLRDGWGGAEPNYLNIFNKQVPILTQMSRDGVKRTIDLQWRKPVVMVVNNGSRSGKEILANGFKKYGIGKLIGTKTAGAVVGGSPFLLEDGNLLYLAVVNVWVDGERLEGKGVIPDIEVPFPLEYAQGKDPQFNKAVDVLFKQL
>NC_019738.1|WP_015181415.1|1571482_1572322_+|DUF4231-domain-containing-protein
MAKKNTYNDYLKQEMSELIEEIELPSLQKRFMKSRWLDQVLWLEGRATKSRSRHNSLRLITIIGGVLVPAVVSANSGNISQQNLKHLLGWTAFGLSQAVAISAAVEEFFHFGENYRRYRNTAENMKIQGWQFFQLTGPYKDAKNHSEAYPTFASNVENIIQQDVEGYISQAVESDTEIKAATQAVMAQNIALANIRLSEHLQPPPSATNTELSPHSTAQTHQPSPPVVLLKEDKVELVTSDSIPHTQLESNNNLDNKDSSIPSLSPPLVANSSPGVEPK
>NC_019738.1|WP_015181414.1|1570624_1571374_+|hypothetical-protein
MERPCNLTFPNQLCAKAIQVHNVVELSEALLTIGLHRTRPTLVLVGGASGIGEADKARLQQLFTDKIAPLAQELGVTVVDGGTDAGIMRFMGQARTQSGGTFPLIGVAALGTVIVPNVPAPSSDAAPLEPNHTHFILVPGTNWGDESPWLAYIATVLSQGFPSATIVVNGGEITFQDVSYSVQANRPVVTLDGTGRTADKLAAALRGEQTDPRASQLAASGKMQAIALLEHPDRVTAVIKEILSRLLHI
>NC_019738.1|WP_155898158.1|1567191_1570419_+|SLATT-domain-containing-protein
MQNQIESLDKAQSLALETAWQRYAQLETNAEAAYKQYLRLRGWVMALAVVATLLAILTSRSDSSLMVSPLGQVLRASLILVPLIGSVMLVFANRLQQGQYWRVFRTGAQEIRKEIYLYRTLLQGQPQRHQWLLERVSQIQRQVVETIGSNWIIKPYTGEILPDYPGNEPNSVLVLTDLGPDDYLRDRVEAPLKSYSQELENIHQTRTRLQTGILAFGALSAFLPALSGSLNIWVAFTTSLGTALIIWLEVSRLDLVVKNYNQLILELNIIRDHWQSLRPPEQTGAEFFKLVIATEKVLWSQHNQDINQMREAVIELRTQPNDMVTQVMSQPVLSKIEQTLLPEKSTQLEILPAKTEIIPEETVEIEVVKPEKQEPKKQNKKDLPHAFVVMPFGRKKGPDGRWIDFNSIYQQLIKPALEEAGFESFRADEESVSGDILTDMFQELLLADLVLTDLSIDNANVYYELGVRHALRKRGLVHIQCGRAYMPYDIFNVRTIPYQCDENGCPDPKHLEKDKQAIVKMARATWESDENRIHSPIFQLLAGLEEPDRRALRTPLATGYWQEYKEWQELVLIAQRQKRIGDVLLLTEEVRNPLIKEEAIADAGKALKNLGNHALALQEYRQGLKINSKNSEFRLEEAFHLSRLKQSEEAIVKLEGLLQDEPNNIKALFYLAGIYTEMWRDEWLKIKNEQERLEEAYEAAHLLRKAIKTYLKGYRLNQDHYHSGISALIFSCVLEHLVEQVGEDSDLEDEAIRQQLPSLKGAVQFTLDSVAQRESNDFWVFVCLADFAVCTAEDPKQVMKAYKKAFTLAGKNKFALKSTLDQLKLLEALSFRPDYVQSGIAVIQAELERFEDQEEAVADTTSNEPASVFLFSGHMIDSPNRAQPRFPADMEREARQKIEDVLDKLHACSGSMAIAPGAACGGDILFIEACLERNIKVEVFLTFSQAEFIQDSVSFAGDNWVARFYAIQKHPNVTIHLQPERLGSVPEGDSPYERNNRWALYSTLMYGIERVRLVVLWNGKGGDAPGGTGDMVQQVRQLGGIVEHIDTTKFDYWKMNEKVVEFPKTIEMAGQVQES
>NC_019738.1|WP_015181412.1|1563959_1566752_+|TIR-domain-containing-protein
MSDAFISYSRRDKDFVKNLHEAFVKLNRNVWVDWENIPLTADWRKEISEGIVAADNFIFVISPDSIASQECGVEIEQAIFHNKRLVPILYRNVDPKDTHPSLAAINWTFFRDSDDFDRAFQELLTAIDTDLEHVKIHTRLQQRSLEWDKKKRDLSFLLRGNDLKEAQQWVAKSTGKHPEPTSLQTQYIVASGQSQFKRQGVTLGAVVFGLIFTAVLAVFAEASRRDAVAQQNFARKQEIIALTALSQASLLTEDQLRALLESVKAAKQARLVKDLPEKVRQQTQEVLRDAVYGVQERNRLAEHTDTVNSVSFSPDRQLIASASDDGTVKLWRNDGKLLYSLNHQASVRSVTFSPDSQWIASASADKTVKIWKRDGSLLRTLQHNDRLRSVAFSPDGKLIAAAGADGTIKLWSLEGKLLNTLKGHTNEVNSVAFSPDGKLITSAGSDRTARLWTREGQPLKTLMGHRDRVWEVSFSPDGQTLASASGDSDVKLWSVDGTLIKTLESHTNWVSSVTFSPDGKKIATASDDDSVKLWSSSGTLLQTFRGHSGGVKNVRFSPDGETMATASADTTIKLRSLRGAVIEILQGHRYSIKGVRFSPDSTLIGTASDDKTVKLWNSQGTFLADLKYGAGMRNVSFSPDGQTMVTPSYDNTVQVWSVQGVLKGTMTEPLRTFKGHTSTVRNISLSPDGKLLASASADGTIKLWRFDDGKLLRSWEAHRPEVTDVMFSPQSDRLVSVGGDALVKIWTLEGKLLQTLQGHKAWINAVILSSDGQMIATASGDKTVILWKRDKNGEFQTTPYRVLTGHQDWVWDVAFSSDSQLIASAGKDDAVKLWNRKGDLLITLRGHQNWVRAVDFSSDGKKLASGSADKTAILWTLERLQGLEAQGQDLDEGKLLEQGCQLLRDYLASSSKLEKSDRHLCDGLTQHTAL
>NC_019738.1|WP_015181411.1|1562907_1563663_-|sucrose-phosphate-phosphatase
MTAFLFITDLDNTLVGDDNALKELKKQLSQHRQEYGTKIVYATGRSRSIYHDLKREKQLLDPDALIAAVGTEIYDHDGQDTPDPAWSDKLAQGWNRDLIVATAAHYSDLVPQPDSEQRPFKVSYYLTEEAAVEVLPQLESLLAERGLDVKLIYSGSKDLDLLPRHADKGLAVQFLKQKWGFDSTQTVVCGDSGNDIALFSVGEERGIIVGNARPELRQWYHKNPADYRYMAQGCCAGGILEGLHHFGFLKT
>NC_019738.1|WP_015181410.1|1562128_1562761_-|Holliday-junction-branch-migration-protein-RuvA
MISYLKGTVATIQKSSGNRVTLILDVNQIGYELQIPKRLSQELLAGSEGMVQVFTHLQIREDQQILYGFASAAERDLFRQLISVSGIGAQLGIALIDTLGLPNLVQAIVTGNIRALAKTPGVGNKTAERIALELKTKLAEWRQLAGVATPASATGPSSAILEDVEMTLLALGYENSEIGQALEAISQDTLVAKSRNAEEWIRSAIAWLSQ
>NC_019738.1|WP_015181409.1|1561406_1561685_-|hypothetical-protein
MKTISRWIVVGVIELIFCFWLLGNAAILVSSPSNIKVWWGVFCYLVGLLILPGASLGYVGSKVYQARLRQKQLRDAFLDDETSLIKLLDSKK
>NC_019738.1|WP_015181408.1|1560488_1561400_-|membrane-protease-subunit,-stomatin/prohibitin
MKIFKRRFLSVAGIAAAIGILTSGCGVIPGTSSKLIPPGYVGLKVELYGKNRGIQNATINTGRVWYNGYTEEIIVFPNHVQYYILTASTEEGSATNESITFGVGGTSVNADVSLSYFFNTDKIKDFYGKYLKDPDQFKATLVRSETRNCFNQWATGLKPEEIVGNKQAQLLKGVQTCLNDKFTPVGVTFDTVGFVSKPRFDKSIETQITARFQAEQQAVAAKAQLEVAEAEAKRKIAEARGDAEVARIQAVTVSPLTIRLRELELQQKMIDKWNGILPVYQGGTAPFPSFDPNAGRAPTQPSK
>NC_019738.1|WP_015181407.1|1559661_1560357_+|hypothetical-protein
MLVPITRQKFEQIIPVLATGPQYGYFWGKFPDFLKRLLISLISVVGVSLLRVFFGSSFDGLILLLCIIAGLYWLWGPIYWATMRNMEIRRYPYSGFWRGEVVDVYVTEDLIGKEETVNNSGELVIVENRERRLNVEVEDENGFGTRVQVPLRRIHKGIAAGQVAEMLVLSYQPDLRNIVKTTDIYIPSLNRFVSDYPYLQPDVFAQVSQKLSQFEEEEEPVKRGKNKRRRR
>NC_019738.1|WP_015181418.1|1575779_1576319_-|GIY-YIG-nuclease-family-protein
MVSETQISSLAELDYIPYLEETGNLPEQLQGKIGVYAIFDSDKTLQFINYSRDIYLSLKQHLVRQPESCYWIKVQTIDRPNRTQLENIREAWIQENGTMPIGNGTDEAAWTQPIDAKLTMTDQEKESYEKGDGLTQVKVLKQVARRVEAKILETLKYRGVQTEIRFNPKLKENGLLDLK
>NC_019738.1|WP_015181419.1|1576377_1576704_-|hypothetical-protein
MARLKILNNYDSRFVLAPEAKENLFSLLTSEPFLNQIAAQGQCQKVEFTELLFQPVPYSTATPKGMPAEFEPYHASDDYLIINVPPNFMFKAKIMTPSRLCAIYRKIA
>NC_019738.1|WP_015181420.1|1576763_1579265_-|iron-uptake-porin
MSITWWNSWLTSPVILGVALFVSDSVICGVASEAAIAHRSPLQETILDVKTEGKHPTGNNLVVSTTPVLATISATTLEEPSVADIEEMIPIIMSEDKSVVVDIEVPKTTDVVKPEQQLKSLITTPPKMVVESSPTSVLLPKDADVLEQIESYTNETNENNPDSLDQVTNVSQLRDVSPGDWAFEALRSLVERYGCIAGYPDGTYRGNRSLTRYEFAAGLNACLQQIERLISSSGEESVRREDLVTLQRIIGEFAPELAALRGRVDGIEERTNELELTQFSTTTKLDGEAIFGVAGIASGDDIFGESADNVWIFGSRARLNLETSFTGRDLLRTRLQAVGLETFTPRTQTFEGNLAFAGEDANNNVEIDALLYSFPISSSTQVVLMANGGAADDFASTVNFLDGDGGFGALTRFGTRNPIYYLVEGSGIGIRQQLGKTFELSLGYLAGDAGNPASGGGLFNGPYGAMAQLVYKPSDRFQIGLTYINSYNRETLTGSPLSNPQSLIRTLAGQPISTGDVPQPAPGIVPTTFFAGQQVPTGSTIPANTTLPPGTQLTASLALPFPLPDGLPFPITVGFITFPPGTPIPAGVPIPAGTSLPNATPIPQDFVLPVPISLTTPGTSLTALVPGTPLPPDNFTGTLGDLLQRPDFAGFPLGFDLNIPIISNSYGLQFSWQASDRFVLGGWVGYTNTSTLSTGNGLLSRGSIDTINGAITLAFPDLGKQGNLAGIIVGVEPTVLNSDIEVNQNLVNPASINNPALIPAGLALLNSSPRLRQLINTFDNPDPDVSLHVEAFYQMKVTDNIFITPGIIWITAPGSLAGNADLVIGTLRTTFRF
>NC_019738.1|WP_015181421.1|1579896_1581891_-|iron-uptake-porin
MTSRVFWRSWLISPAILGGALLASSSALAADGAATAKVAIDVSEVPLETVTTQPPTDEPAIATTEPMIAANPESQSGNLASVETEAAVSISELPGEDRDVNVVEPINPYNHNSESNSLESINKVSQLIQDSPQEIDGSDAGVIEPSYEDSTDPLEQVTNVSQLRDVSPGDWAFEALRSLVERYGCIAGYPDGTYRGNRAMSRYEFAAGLNACLQQIERLLGSGTNFATKEDLTTVQRLIQEFGSELANLRGRVDGLEARTTELELTQFSTTTKLNAQAIFALTGIATGENALGGNIPNVVAFGDRVRLNFDTSFTGKDVLRTRLQAVNLDSYSGTSTFTPEGDLRFGDGTFGSGSNNDIGIDALLYAFPIGEKTTVVIEANAGAPDDFANTVNPFIDGDGDTGALSNFGTRNPIYGLVGGAGIGIRHEFSDALELSLGYLAGDAGTPDEGSGLFDGAYGALAQITFKPINQLTLGLTYIHSYNADLTAGSNRANLRSALADNPNLPERLAPFAGLDLPVSSNSYGIQASWQFSPKFLVGGWAGYTATRTLAPLIATDGSGSVLERGDMSIWNFAAHLAFPDLGKEGSVAAIIVGMEPKVTGASRSLRDAIGKDSDTSLHIEAFYEYKLTDNISITPGVIWLTSPDHSSNNNDIVIGAIRTTFNF
>NC_019738.1|WP_015181422.1|1582158_1582578_-|helix-turn-helix-transcriptional-regulator
MTAHLSAQGATVSPVQEIKDLNCHSPHPVEMDDVERLQQKILSTEKAQRMAEFFSLLGDTNRLRIISVLAIQELCVCDLAAILDMSESAVSHQLRALRALRLVRYHKRGRKVFYHLQDNHVLNLYKSVAEHLEETDSDS
>NC_019738.1|WP_155897950.1|1582632_1582791_+|hypothetical-protein
MISVSNFRSQPQSGKPEVDPAASYSYRTLKVTVQGLQNPKVRLSGLTFSIAL
>NC_019738.1|WP_071884126.1|1582808_1582973_-|metallothionein
MTTVTSMKCACDSCLCVISTDDAVDKDGKFYCSESCANGHTDGKGCSHQGCTCG
>NC_019738.1|WP_015181424.1|1583500_1583887_+|hypothetical-protein
MVVVVVVINVVISLLCLYVAWYLWNLRRALAIATAVVTIFERDTHNALQGAPQAISQGQLGIRGSRGSYQQLEMQLQRIQQILGFLGFVQSLLPIVARSSTRFRQRTRADVLKSKSSRRSRRQQRSKR
>NC_019738.1|WP_015181425.1|1584158_1584512_+|YtxH-domain-containing-protein
MSKKSAGAFISGVLLGSAIGTVTGLLIAPRTGRDTRQLLKKSADALPDLAEDLSTSVQLQADRLSESALRNWDGTLARLREAIAAGIEASQRETLDLRPSKTDVAAESRPSVPDHQL
>NC_019738.1|WP_015181426.1|1584522_1585128_+|DUF948-domain-containing-protein
MIDPLFWLGLSILLVAVSLTAVLIAAIPALQELGRAARSVEKLADTLRRELPPTLEAIRLTGLEISDLTDDVSEGVKSAGQVAKQVDQSLSGVKNQAKNVQVNTRGVVAGVKAAWKTWRRPNLGRRSVDRLPPSQRTALDLRERDRSAPMTDSATSDNPYQEHEADYEDNDSNRHEAYYQNSPGDSRLPRQHEDEGLEFPE

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Crispr_ID: NC_019738_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_6

1787477-1787583

Orphan

Consensus_repeat	Method
GGAGCGAACCTCACTAGAGCGAACCTCTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_6

>merge|NC_019738|6|1787477-1787583|CRISPRCasFinder
GGTGCCGACCTGACGGGAGCGAACCTCACTAGAGCGAACCTCTTTTTAGTCGATTTCTCAACAGCCGACCTCACGAGAGTTGATCTCACTGGAGCGAACCTCACTAG

>NC_019738|6|5|1787477-1787583|CRISPRCasFinder
GGTGCCGACCTGACGGGAGCGAACCTCACTAG	AGCGAACCTCTTTTTAGTCGATTTCTCAACAGCCGACCTCACG
AGAGTTGATCTCACTGGAGCGAACCTCACTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015181567.1\|1786147_1786594_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181576.1\|1794038_1794263_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181572.1\|1789733_1790861_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019738.1\|WP_015181566.1\|1782047_1786031_+\|cobaltochelatase-subunit-CobN	unknown	unknown	gnl\|CDD\|235663
NC_019738.1\|WP_015181578.1\|1794958_1796359_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NC_019738.1\|WP_015181575.1\|1793260_1793995_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_019738.1\|WP_015181563.1\|1778591_1778861_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181571.1\|1789231_1789720_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NC_019738.1\|WP_015181577.1\|1794330_1794765_-\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226278
NC_019738.1\|WP_155897957.1\|1773608_1775897_+\|mucoidy-inhibitor-MuiA-family-protein	unknown	unknown	gnl\|CDD\|379285
NC_019738.1\|WP_015181568.1\|1786757_1787099_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|177056
NC_019738.1\|WP_015181573.1\|1791261_1792635_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_019738.1\|WP_015181574.1\|1792697_1793288_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_019738.1\|WP_015181570.1\|1788186_1788828_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224001
NC_019738.1\|WP_051055610.1\|1779002_1779416_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NC_019738.1\|WP_155898161.1\|1776634_1778218_+\|mucoidy-inhibitor-MuiA-family-protein	unknown	unknown	gnl\|CDD\|274045
NC_019738.1\|WP_015181559.1\|1772574_1773285_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
NC_019738.1\|WP_015181561.1\|1775967_1776612_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223716
NC_019738.1\|WP_015181579.1\|1796644_1798510_+\|NAD(P)H-quinone-oxidoreductase-subunit-F	unknown	unknown	gnl\|CDD\|236008
NC_019738.1\|WP_041779935.1\|1779485_1781882_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015181572.1\|1789733_1790861_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.000484051
NC_019738.1\|WP_015181566.1\|1782047_1786031_+\|cobaltochelatase-subunit-CobN	gnl\|CDD\|235663	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.	0
NC_019738.1\|WP_015181578.1\|1794958_1796359_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.0046425
NC_019738.1\|WP_015181575.1\|1793260_1793995_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	6.71639e-26
NC_019738.1\|WP_015181579.1\|1796644_1798510_+\|NAD(P)H-quinone-oxidoreductase-subunit-F	gnl\|CDD\|236008	PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F; Validated.	0
NC_019738.1\|WP_015181571.1\|1789231_1789720_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	0.00557857
NC_019738.1\|WP_015181577.1\|1794330_1794765_-\|DUF1311-domain-containing-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	1.47537e-23
NC_019738.1\|WP_155897957.1\|1773608_1775897_+\|mucoidy-inhibitor-MuiA-family-protein	gnl\|CDD\|379285	pfam13598, DUF4139, Domain of unknown function (DUF4139). This family is usually found at the C-terminus of proteins.	8.48151e-30
NC_019738.1\|WP_015181568.1\|1786757_1787099_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|177056	CHL00134, petF, ferredoxin; Validated.	1.18766e-41
NC_019738.1\|WP_015181573.1\|1791261_1792635_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_019738.1\|WP_015181574.1\|1792697_1793288_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.40125e-61
NC_019738.1\|WP_015181570.1\|1788186_1788828_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	3.42799e-26
NC_019738.1\|WP_051055610.1\|1779002_1779416_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.41122e-34
NC_019738.1\|WP_155898161.1\|1776634_1778218_+\|mucoidy-inhibitor-MuiA-family-protein	gnl\|CDD\|274045	TIGR02231, Hypothetical_protein_ZK1055.6b, conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.	8.70656e-67
NC_019738.1\|WP_015181559.1\|1772574_1773285_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	3.54309e-114
NC_019738.1\|WP_015181561.1\|1775967_1776612_+\|hypothetical-protein	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.23322e-06
NC_019738.1\|WP_041779935.1\|1779485_1781882_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.6891e-64

>NC_019738.1|WP_015181568.1|1786757_1787099_-|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MAVYQVRLVNPTLNLECTISVPDDQYILDMAEEAGIRLPAGCREGTCSSCIAKLVSGEVDQSEQKFLQPSELAAGYTVTCVAYPVSDCTLETHQEQVLYKSSLYLNTNPVQAN
>NC_019738.1|WP_015181567.1|1786147_1786594_-|hypothetical-protein
MSRLLYEKSVSYKGYLIIPFVFGIADNQSIYSYKLLSELGHKGKFHKSENPVGIYSSSLEGSIAIAKEHLDQNSEVVSSDDYFKRRYTYRNNLIIVYETGGKYFYDHYKPDHLNNVAAPKIFTSEQECISWIKQGLDRSAIGEEAEKL
>NC_019738.1|WP_015181566.1|1782047_1786031_+|cobaltochelatase-subunit-CobN
MHRIAATPGGWNPQAEGVIFIEQSAAPIVFLTAADTDIQTLAASTSQLPVGFPGLRVVNLLQLQQQLTIDTYAENVLSSAQIIILRVLGGRAYWSYGLEVVLDTVQQTSAALIVLPGDDRPDPDLMSHSTVSLTVVNQVWRYLTEGGVENFVNALKFVADVCLEQTYHPPAPKPVPRVGLYSWGIGKGDKGDKGDKGDNSLSRLPHPKSKIQNLKSKVGILFYRAHYLAGNLSPIDALCQALAKRQLEPVPIFVSSLRDSDVQAELLTYFQPKEGFGIDLLLNTTSFSLAKLNAETPQLELWKRLDVPVLQVIFSSGTVEQWDSQFQGLTARDTAMNVALPEVDGRIISRAVSFKSVQSWNPDLETDVVVYEPVPCRINFVADLAASWVQLRQTPPPERRIALILANYPNRDGRLANGVGLDTPASCVEILKGLQQAGYRVEDIPETGDELIGRLTAGVTNDPEGRDFRLVRQELSWEEYGEYFEGLPAEVHKGIGDRWGNLEQRTENPRVPFPISGIQLGNVFVGIQPSRGYDVDPSLNYHAPDLEPTHAYLAFYYWLRQHFGMQAVVHVGKHGNLEWLPGKSVALSGKCYPEVALGAMPHLYPFIVNDPGEGSQAKRRSQAVIIDHLTPPMTRAQLYGPLQKLEGLMDEYYEAQSLDPKRLGVISDRITQLIIQENLHQDLGIETDEIQNPDSNIQNRIDGYLCELKEAQIRDGLHIFGHCPDGRQLRDLIVAIARHPSHDRIGLTRALAEDLGWDFDPLTADLSGVGDNNYRTIGDMVEALEQQAAELVEQLIQNQIPPLLRGDSVGRGLGEASKRELEWICDRLLPSLQQTNQEITQLLRGLDGRYIESGPSGAPTRGRPEVLPTGRNFYSVDIRAIPTETAWAVGRKAAEVLIERYTQENGEYPKTLGLSVWGTSTMRTGGDDLAEALALLGVQPIWDYPSRRVVDFEILPVSVLGRPRVDVTLRISGFFRDAFPNLISLFDQAVAAVAALAEPPEDNPLAAQVQQEAEMWLSQGLSQEEANVRSRYRIFGSKPGAYGAGLQGLIESQNWTDEQDIARAYINWSSYAYTSSPPRACFQTSPQNSDPPLPSLTRGENSIKVPLKKGDLGGSPGLKADSNPLGGLGGVAAPEAFNQRLKQMQVVLHNQDNREHDLLDSDDYYQFQGGLTAAVRALTGKNPTIYFGDHSIPENPKVRQLREEIARVYRSRVVNPKWIEGVMRHGYKGAFEMSATVDYLFAYDATTTCVEDYMYQGVAEAYLFDSKVQEFIQQKNPWVLRDMAERLLEANQRGLWKEVKGEVLEELRAIALQAEAVIEGTHDQSLR
>NC_019738.1|WP_041779935.1|1779485_1781882_-|response-regulator
MPILGDPRFSRTLPLAMFERLQDLLKQMKSRLGEEALLLTDEKSLSKSATPPEFETQRFAVLLSLRFSVLLVGEPQEPDSVAGYDGQSRLYQVGLTFEPKAIASFLTQLSRHASHPPIALDTLHQSQTRLRTNDPTLQTEFTLSLLEILASGEMSDSAHCPVAVCQPLVDEALCQQIEQERLLNQVTTQIRQSLELPVILETAVEQLRNFLQVDRLLIYQFDEFNCVSAIYPDNIPSTQDKTESLNLRLTSQGSILNSTVYWGRVTYEAKASDAISSVLNLVEKEDCLLQVPNCRTKYRQGLTLSIDDVEAAYPDSSCILELMRRYQVRAKLVTPIIVQEKLWGLLIANQCFQPRHWLENEKIFLKQIAEHLAVAIHQAQLYAQLQQQKTTLEQRVIERTQELRDILQAAQAADRAKSEFLATMSHELRTPLTCVIGMSATLLRWSFGQEGTQQVPLHKQRRYLKTIQESGEHLLELINDILDLSQVEAGKAILNISEFSLNNLAHQTIRTFQEKADLRQLKLEMDLQVKSQSMNGTRRQEDRFCADQRRVKQILFNLLGNAIKFTPSGGKVILRIWREQNWVVFQVEDTGIGIAEEHIPLLFQKFQQLETVYQRNYEGTGLGLALTKQLVELHGGRIEVESVVGQGSFFTVWLPNQPLTSSTSMREAALQKNNFIVQGSIVLVEDQEESATSICEILTAAGYHVVWLIDGSTAFQQIELLQPNVVIVDWQLRGMDGYEVTHCLRNSPSTQQIKILALTTSTITEDQEDELSAFIDDYLLKPVEPLQLLQQVTELMAK
>NC_019738.1|WP_051055610.1|1779002_1779416_+|response-regulator
MCLALVVDDDPTQQLIISKLLKKIGLDVIVANDGIEALERVQSTSPVLVILDILMPRMNGYEVCQRLKSNEKTQHLPVLMYSGQEQEFKALMKGNKSGADAYLSKLSHPQELINAIYQLLPKKKKSLPEIEPIRVFK
>NC_019738.1|WP_015181563.1|1778591_1778861_+|hypothetical-protein
MATYAITGLTYLEIKTLIQSLNALHWETDYTEFCRILGLSEGTSYSLQKYTEFEELCKALNNFNIPTLLKLIEAGAMADQQPKSVSLLD
>NC_019738.1|WP_155898161.1|1776634_1778218_+|mucoidy-inhibitor-MuiA-family-protein
MQAIGQSPNTIQQLTLDAPVATVTLLEDRALVRRVGQVNLTQGLWRIKVENVAPVLSDKSLRAEFTGDYSGARIDDVRVRRQMRVLEEERSEEIKGLLAELRSLQNTFNHLTEDRQHQEYSFEQVGTILAHSLQELPIDAVWGQLDPKSWRDQFQTLFKQLRELRTEILNGYHNQEKLRELLNDLGTRIRALSSPELLYTAHIEADLMVNQAGEYAIAFDYVVPNAMWRPWHQARLLLEEKPSLSFRVDGCVWQRTGEDWKNVDLVFSTARASLGTEPPLLADDPLNVREKSKQIIIETRDQKIQTTGLGAGATPGTVELPGVDDGGEVRNLRPASKATIPSDGRPYRVPIFSFSSEAEVEYVLMPELSCQVVLKSEQTNTAQFPILAGPVDLVRSSEFVGKTSVGFIAPGEKFALGWGPDGAMRVQRTTTQKRKQDHLTKWNTVTTTIELFISNIGAESRTIKTTERVPVSELEQVKVEVIAQKTTDGVQPDENGFCTWHFTLEPYSQLQVTLVYKVSAAPEVQGF
>NC_019738.1|WP_015181561.1|1775967_1776612_+|hypothetical-protein
MQSEHLQQIMDYYIEDAQNHLAIIEQHLLKLQSTIEDPEIVSELFRAARCGIVGGANLLPISSFYINSIHKTGFCLVDCLKVIQQQGSIKIDQKLKDLLMQVFYRLKSLIEQLRQPSNLKDDQAKQVISEIEPIRAALIAHLHGLSHQSGGMNRQEIALTKCCNVSDMTLQESAHIASELDDDIPSLEELESLFDELFLDSSCANVAPISQDEL
>NC_019738.1|WP_155897957.1|1773608_1775897_+|mucoidy-inhibitor-MuiA-family-protein
MSDDKTPSVYEPLTSRIDKVKVYAAGATVTRVADLQLDAGEIPEQVEMAGLPLALDDSSVRVRVESALGASTAIATDVRIGLAVPPRQAVQNSPTDEEVREAKAEVQQLEDAIALIENEIAILYQLDVPERPDGEEGKAPPPSPLTARLALTNFKDEQVRARITEKRETTEKLRQAQEHLDDLLQKQARASNAKEVRPHELRKTVVVRLSNEGEPSTLAGQRLVVEYFVPGARWTPTYICRLDSTGNQATVAVRALICQRTGEDWSGVSLELSTAEPLSWCELPELPSLRLGRAQPRLKTSGWRLPPVGAEILFEDFDRQKQVAISAVSVHSVLTDIPSPSVPPLPNLAVEVLKHQGIDATQVPKKMSQSPLDTQEIFERSQELRKASFSQQRRRQRVELTTDEPSAPRDEFDITLMSPGMIDAGEYSGYAESMPAAAPAVFRSPSRPKTAAFHESRQAQVREEEDALTNLLAYSLMRMGAADEPTQRGKLSIEQRQEVYLEILKRRNVVVSFNVLTIVQQAAIDARNCIYINLPPGGINVRQVAGSFDYAYSADGRIDVPSDGEFHSVALTSNSTDVDLRYVVVPREDTNVFRIAQLKNPLQAPLLAGPADVYVDGEYILSTKITTVPPKGQMELGLGVEQAIKVARNTSYQEVRSGETLVAFNELRHNIQIDIANRLPRDAAIEVRERIPIPDADAKVDVQIDRASPEWEKYEQQERGIPIRGGYRWRVQVPGGEQTKLSVQYTIKTFVDSELIGGNRRE
>NC_019738.1|WP_015181559.1|1772574_1773285_-|N-acetylmannosamine-6-phosphate-2-epimerase
MVANSNNLIPSFLKGLIVSCQAPIDSPLHDPLVIAAMAQASVNQGAVAVRIDTPAHVQAVRRQCPKTPIIGLWKQQLPGFDVYITPQFHHAEAIASAGADIIAIDATLRQRPGGETIETIIERIHDELGKLVMADVDTIESAIASQKAGADIVGTTLYGYTAQTQHLSPPGFDLLSQIVEQLDVPVICEGGIASPQMAQEALKRGAYAVVVGTAITGIDLQVKAYQKAIIDVSPAP
>NC_019738.1|WP_015181570.1|1788186_1788828_-|alpha/beta-fold-hydrolase
MNGASDYTRRTQPERNPVLLIHGITDTIAVFSKMAPALSRRGWSVHHFNMIPNNGDCCLDLLAKQVADYVAQTFDPKQPIDIVGFSMGGLVSRYYIQRLGGAERVKRFVSISAPNNGTLAGYLSWRPGCVQMRPDSAFLQDLNRDAISILGRLNFTVIWTPYDLIIVPSNSSQMPVGKEVTVPVRLHSWMLTDDRCLKAVVTALSEPILSYVS
>NC_019738.1|WP_015181571.1|1789231_1789720_+|hypothetical-protein
MFGFIKNLFGGIAAFFSGLFSGKKSKDGESAPKAKKSKEYFLELDDSGSVPSAPEAKKSEPIKAKAAAPAKQAESSSKSAVATLERPKTSTVNEVPSGNEKVKVEAQPNPPAAATNGKVAPQEASTFAPNYLMPTPTNSRRRPGPNMDMFRDMARQVKTPNR
>NC_019738.1|WP_015181572.1|1789733_1790861_-|tetratricopeptide-repeat-protein
MIDQVADAFERKDYRTAARLLKQWVKQEPKNLWVQLYIGRLHEATGKQESAENVYRQLLRGTTNPKIISQARQGLGRLEAMEKERRRQALAEATADPNSGQVGVLVLEPIQAETKAEAVQKFARIMQLDAYSARLQLPMRGWRLYRTGSVGELNFYVSSLREASIPCFCAAIADIKKINVFNVHYFSPESQSSQPTVVCKNEQGQLGSLTFDWSEVTQRVEGLLPLFDEVVDRDARGNFKRKTQTLDYVQFCDLHLPERGSILRFGARNYQFQQGLALSPKPLADQRRKSKALSLEQGTTQKNWNHLVDFLNQNLPQVPVWSDFKTFAETATDFREMLGNLPSHIDLFRRKETPWDPAFQLYSGLVFLKNSSQEK
>NC_019738.1|WP_015181573.1|1791261_1792635_+|nicotinate-phosphoribosyltransferase
MNIEDQELILGAEDYSLLTDLYQLTMAACYTGEGFFARPASFELFVRQLPKGFGYLIAMGLAQALAYLEKFRFTHSQLEALQATGIFAGVPEQFWSILADGRFTGDIWAVPEGTAIFASEPLLRVEAPLWQAQIVETYLLNTINYQTLVATRAARIRDVAGPEAQLLEFGTRRAFSPQGSIWAARAAMAAGLDATSNVLAALKLGRKPSGTMAHALVMAISAIEGSEQDAFSAFYRYFPNAALLIDTYDTIAAAEKLAQREKAGEIQVAGVRLDSGDLVTLSQKVRSLLPNATIFASGDLDEYEIARLQQEGACIDGYGLGTRLVTGTPVNGIYKLVEIDGIATMKESNNKATYPGRKQIYRQIIKGKLIQDRLALFGETPLENEQPLLQLVMKQGERVQPPEPLTEISQRTAASVATLSTSIRQLDDPTPLAVQISDHLLQLTQATQRRQISQLTS
>NC_019738.1|WP_015181574.1|1792697_1793288_+|nicotinate-nucleotide-adenylyltransferase
MVNIALFGTSADPPTAAHQVIINWLSDHYDYVAVWASDNPFKSHQTPLEHRSQMLRLLIEGIEPPRRNVTLHQALSSPRTLETLEKAREHWGDQVSFSLVIGADLISQMPRWYQIDQLLKQVELLVVPRPGYEIDEVGLEELRKLGAKVAIADLKAPAVSSTAYRENGDTQAVTPPVEDYIHREQLYTCQDAAPRR
>NC_019738.1|WP_015181575.1|1793260_1793995_+|NUDIX-hydrolase
MPGRGTQKVNKKALADFKVGVDNVIFSVDTQQNRLLVLLVMRQDQPFLGQWSLPGTLVRNGESLEDGAHRILAEKIRVNNLYLEQLYTFGGPSRDPRESPSSFGVRYLSVSYFALVRFEEAELIADGVSGIAWYPIKQVPKLAFDHNEILEYGYRRLRNKLEYSPVAFDVLPEVFTLSDLYQLYTTILGENFADYSNFRARLLKLGFLSDTGLKVSRGAGRPASLYRFDAEAFAPLKDKPLVFI
>NC_019738.1|WP_015181576.1|1794038_1794263_-|hypothetical-protein
MLLELQRLSVPPGQRVLLRDVSWQEFETILQELGEHRAARLAYDMGTLEIMTPLPEQAAQSPTDDTPQSQNTKK
>NC_019738.1|WP_015181577.1|1794330_1794765_-|DUF1311-domain-containing-protein
MYKKLIHVSMLVIIAFCLSLASSTPSVSQAANSPITNNFAIAQRVDCSNAQTTVEMKYCSQQYYQAADKQLNQAYQKVISSIKGEQKGLLTTAQQAWIRFRDNNCNFEVYPNRGGTGYEIFRNGCLERLTKQRTKDLQDYLSNR
>NC_019738.1|WP_015181578.1|1794958_1796359_+|hypothetical-protein
MQLRFLSQLSLFLVILTFPYFLPATPKVIRCTFLAWNAQASDFGRDGRNGSDGQTGRRGRDGQSQTIFANGSPVNLDLSGEDGLDGDDGREGDDADCGRQPRDVDRNLRAADGGKGGNGGNGGDGGNGGSLTIYYTNPADLKQIFVRATGGRGARGGRRAEGGRGCNCRDRNWEIQTCKGTPGSPDYSCKTRKFSCEDGRDGSNGSDGKDGSDGTLGRITLIQRSETLAADNPTVTVGMAQLKDQVFPLSKNIFQTRKGASSVLAPGSVMADQYLEFVERAESSFQVVWNATRPITDFAREQVKVSLEDDKQVKVSFPEEVWVDGTTSQQGGTTQFIASNVILKKEATQLKRADFSGSGTDLNFAVIDAAGKSDLITTQFRIKYKVSESGDRFRDRFDYRTRYEGDIPAELVTRSNNRFVINIGKLPISPQYLKSGLPVEIELVATRSFAGRSAEQKIEWRGEIRR
>NC_019738.1|WP_015181579.1|1796644_1798510_+|NAD(P)H-quinone-oxidoreductase-subunit-F
MAQFFLETAWLIPCYALMGSILAIPWSPSLIRRTGPRPAGYINALMTLVAFLHGLIALSATWNQPAQEILIPWLQVVDLDLTIPLEFSSITIGATLVISGINLLAQIYAIGYMEMDWGWARFYSLLALFEAGMCALVLCNSLFFSYIILEVLTLGTYLLVGFWFNQSLVVTGARDAFLTKRVGDLFLLMGVIALYPLAGTWNFSELAEWASTANVDPKVAALLGLALIAGPMGKCAQFPLHLWLDLAMEGPVPSTILRNAVVVCTGAWVLIKLEPIIALSPLAASATLIIGAVTALGGTMVAIAQIDIKRTLSYLVSAYMGLVFIAVGTGQSETALTLMLTYAVSMALLVMSIGGIVWNSITQDVTKLGGLWAKRPASAFSYLVGAAGLVAVPPLGGFFALLQVGDHLSSTYPWFLGLLLLVNGLATFSLTRVFGLVFGGKPKPMSERSPEVHWPMALPMLLLMGFTLHVPLILLQWQLIPDWSTLNTTVAGLLVLSSAVGCTLGSFIYLNNGFAKPVRFGNKSLQDLFAYDFYTQKVYRLTIVFVVDLVSRAISWADRYIVDGVVNLVGILTVFSGQSLKYNVSGQTQFYALTILFGIVLFGIVVSWPLLARLSLIVNGF

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Crispr_ID: NC_019738_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_7

2087079-2087334

Orphan

I-D,II-B

Consensus_repeat	Method
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG	PILER-CR
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG	CRT

3 spacers

The CRISPR arrays of NC_019738_7

>merge|NC_019738|7|2087079-2087334|PILER-CR,CRISPRCasFinder,CRT
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACAATGAGGCATTGAAGTCTGAGAACGCCGATTTTAGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACGCCAGATTCCACAACCACATCGCTAGTGTTCGGAAGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACGCAGGGGTGGCTTACCTGGAAGCGCTGAAGCAAAAGTGTCTGAATTCCATCTAATCCCTATCAGGGATTGAAACG

>NC_019738|7|2|2087079-2087334|PILER-CR
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACA	ATGAGGCATTGAAGTCTGAGAACGCCGATTTT
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG	CCAGATTCCACAACCACATCGCTAGTGTTCGGA
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG	CAGGGGTGGCTTACCTGGAAGCGCTGAAGCAAAAG
TGTCTGAATTCCATCTAATCCCTATCAGGGATTGAAACG

>NC_019738|7|6|2087079-2087333|CRISPRCasFinder
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAAC	AATGAGGCATTGAAGTCTGAGAACGCCGATTTT
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAAC	GCCAGATTCCACAACCACATCGCTAGTGTTCGGA
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAAC	GCAGGGGTGGCTTACCTGGAAGCGCTGAAGCAAAAG
TGTCTGAATTCCATCTAATCCCTATCAGGGATTGAAAC

>NC_019738|7|1|2087079-2087334|CRT
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACA	ATGAGGCATTGAAGTCTGAGAACGCCGATTTT
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG	CCAGATTCCACAACCACATCGCTAGTGTTCGGA
AGTCTGAATTCCATATAATCCCTATCAGGGATTGAAACG	CAGGGGTGGCTTACCTGGAAGCGCTGAAGCAAAAG
TGTCTGAATTCCATCTAATCCCTATCAGGGATTGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015181798.1\|2083822_2084143_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181809.1\|2098054_2098252_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181805.1\|2091503_2093849_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|306677
NC_019738.1\|WP_041780602.1\|2076992_2078183_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NC_019738.1\|WP_155897964.1\|2074360_2074528_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181797.1\|2079841_2083435_+\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_019738.1\|WP_015181795.1\|2078207_2078831_+\|Eco29kI-family-restriction-endonuclease	unknown	unknown	gnl\|CDD\|370543
NC_019738.1\|WP_015181810.1\|2098664_2099681_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NC_019738.1\|WP_015181799.1\|2084378_2084600_+\|DUF4327-family-protein	unknown	unknown	gnl\|CDD\|372966
NC_019738.1\|WP_081594713.1\|2090821_2091502_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379504
NC_019738.1\|WP_015181803.1\|2089504_2090455_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_019738.1\|WP_015181806.1\|2094207_2094903_-\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235546
NC_019738.1\|WP_081594714.1\|2097620_2098052_+\|lysozyme	unknown	unknown	gnl\|CDD\|381599
NC_019738.1\|WP_155897966.1\|2095820_2095958_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181800.1\|2084763_2085456_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223489
NC_019738.1\|WP_015181807.1\|2095018_2095765_-\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|311960
NC_019738.1\|WP_015181802.1\|2087549_2089421_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224582
NC_019738.1\|WP_155897965.1\|2078805_2079582_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_019738.1\|WP_041779953.1\|2074548_2076678_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
NC_019738.1\|WP_015181801.1\|2085817_2086501_-\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|224837

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015181805.1\|2091503_2093849_-\|PAS-domain-S-box-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	1.50033e-84
NC_019738.1\|WP_041780602.1\|2076992_2078183_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	1.37242e-65
NC_019738.1\|WP_081594714.1\|2097620_2098052_+\|lysozyme	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	5.68903e-64
NC_019738.1\|WP_015181797.1\|2079841_2083435_+\|AAA-like-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.81288e-90
NC_019738.1\|WP_015181795.1\|2078207_2078831_+\|Eco29kI-family-restriction-endonuclease	gnl\|CDD\|370543	pfam09517, RE_Eco29kI, Eco29kI restriction endonuclease. This family includes the Eco29kI (recognizes and cleaves CCGC^GG ) restriction endonuclease.	2.62179e-67
NC_019738.1\|WP_015181810.1\|2098664_2099681_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	6.32009e-20
NC_019738.1\|WP_015181799.1\|2084378_2084600_+\|DUF4327-family-protein	gnl\|CDD\|372966	pfam14217, DUF4327, Domain of unknown function (DUF4327). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.	1.28588e-37
NC_019738.1\|WP_081594713.1\|2090821_2091502_+\|hypothetical-protein	gnl\|CDD\|379504	pfam14206, Cys_rich_CPCC, Cysteine-rich CPCC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 68 and 104 amino acids in length. There are six conserved cysteines and a conserved CPCC sequence motif.	1.13147e-33
NC_019738.1\|WP_015181803.1\|2089504_2090455_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.64558e-92
NC_019738.1\|WP_015181806.1\|2094207_2094903_-\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	3.94871e-90
NC_019738.1\|WP_015181800.1\|2084763_2085456_-\|alpha/beta-hydrolase	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	2.94783e-09
NC_019738.1\|WP_015181807.1\|2095018_2095765_-\|DUF882-domain-containing-protein	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	4.19047e-22
NC_019738.1\|WP_015181802.1\|2087549_2089421_-\|ABC-transporter-permease	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	0.00195585
NC_019738.1\|WP_155897965.1\|2078805_2079582_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	4.50174e-31
NC_019738.1\|WP_041779953.1\|2074548_2076678_+\|DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	0
NC_019738.1\|WP_015181801.1\|2085817_2086501_-\|phosphoribosyltransferase	gnl\|CDD\|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	9.39039e-85

>NC_019738.1|WP_015181801.1|2085817_2086501_-|phosphoribosyltransferase
MNRQFRDRTEAGQLLARKLTAYANRSDVMVLALPRGGVPVAFEVAKVLSVPLDICLVRKLGVPGHKELAMGAIAKDDVLVIDKGILEWLGISREVIEQVATIERQELQRRDRIYRGNRAIPNVQRRTVILVDDGIATGSTMRAAIATLRQHQPAQIVVAVPVASASTCRDLTTEVEKVVYVLAPEAINSISCWYANFSQTTDEEVCSLLAQANNEQTTAAPTRNIPS
>NC_019738.1|WP_015181800.1|2084763_2085456_-|alpha/beta-hydrolase
MNRTSTCNAQECLVSVPTGSVCLTGNLRVPDKARGVILLANGNGSNRYRSRDRYMTQVLCQAGLATLWIELLTPQEEAIDRQLRQLHFDIGLLAERVASASHWLTQHPITDNLGIGFLGTSTRSAAALMAAAQYPELIRAIVSSGGLPYLAGSALSRIKAPTLLIVGENNIPVLEMNQEALKHLHTEKQLEIIPGATHLLEDFGALENVTQLASQWFGQHLTPAHQSVLP
>NC_019738.1|WP_015181799.1|2084378_2084600_+|DUF4327-family-protein
MMHSVQYSLDVIEEEARQLVKKGLVMRQQPIYTLCQYIPGREWVCIECELERNDFLLRDPISDLLGREEWDDD
>NC_019738.1|WP_015181798.1|2083822_2084143_+|hypothetical-protein
MKKMKALMIILGVVLLSGTDALAANLNRVNDGMQAFAENSRFNCTSTDVASTQTNTGNPTLTPQKRSHHVELKDNSRFMIGGFAPEDRGNPGDRGNPPPPKSGGSR
>NC_019738.1|WP_015181797.1|2079841_2083435_+|AAA-like-domain-containing-protein
MLYSNAVTHSAYEYQVGGSLPINAPSYVVRQADSQLYDGLKAGEFCYVLNSRQMGKSSLRVRTMQRLQAEGVACAAIDITAIGTYDITPEQWYAGIIDSLVGSLNLYETFDLFSWWAEQDLLSNVQRLSKFIEEILLKLIPHNIVIFVDEIDSILSLNFNIDDFFAVIRDCYNNRADRPDFRRLTFALIGVATPSSLIQDKRRTPFNIGRAIELTGFALQEAQPLALGLAPKAHNPQSVLQAVLDWTGGQPFLTQKLCQLILKAESSIPEGQEREWVEKLVRSRLIENWEVQDEPEHLKTLRDRLFRSQQCTARLLGLYQQILQQGEIAADDSSEQMELRLSGLVVEHHGSLSIYNPIYAAVFHQTWVERALCDLRPYGEAIAAWLSSHCQDESRLLRGQALHSAQAWAAGKSLSNDDYQFLRASQELDRRDIQIALETERQAKQLLAEAQQKAELALEEERKANRILAEAQKKATQTIRTGLCGLVSSFVLAITVSVWAIPALKQAQQGVRLEQEGIKALRSFDSEEIEALLSAMEAGQKLKTMIGEYHSLNDYPALSPLWVLQSILDNIHERNQLQGHQGRVDSVTFSPDGQYIATTGEDGTVRLWNLSGKQLTQFTVAQARVKCVTFSPDGQHIATASEDGIARLWNLSGKQLAQFVGHQDKLTSVKFSPDGQHLATASEDGTARLWNLSGKPLTQFKGHIGQIWSVSFSPVRGGTSAAQGVGQRLATAGEDGTVRVWDLSGRELAQYQHSGPVSTVSFSPDGQSLVTVTGLDGTVRLWNLQKQLLAQWKGSRDLVLSASFSPDGQRIATAGVDGTTRLWDLSGQLLAELKGHQGWVYRVSFSPDGQRLATAGADGTARLWDLSGQLGRDRQQLAGWRAHWGEAWSVNFSPDGQTLASAGADGTARLWNLSGQLLARLNGHQGGINAVVFSPDGQRLATAGQDGTVRLWNLSGEALVEIKDHKRPVYSLRFSPDGQRLVSAGEDGTARLWDLNGKMLAQFVGHKEAIWSVSFSPDGHTVATAGKDGTVRLWNLFGQQLIQWRAHQDGVYSVNFSPDGQRLVTAGIDTTVRRWNLSGQELARLNTHQGGVLSASFSPDGQRIATTGQDGTVHLRLLSGLQIAQLSGHQGRVYSVSFSQNGQYLATAGRDGMIKLWRIEDLDDLLARGCDWLQDYLVTHPNTSIGCPNPNPDSVRR
>NC_019738.1|WP_155897965.1|2078805_2079582_-|YdcF-family-protein
MLESAWCDHSMTQWLTLKNLLSQWLMTPTLILVPLVILVGLLWLIPRRRWKRLFAGLGIILLVIYFTATSSLTVTLASQGLVAFLPEDSGETVDAMVVLGRGYPFRASRVEVAAKLWQEHRAPLIFASGAGDASETIELFTAAGIPNQALAHEDCSRTTKENAEFTAAVLQPQGVRTILLVTDPPHMLRSLLTFRHFGFQVIPRTSPLPSELTPRRKAVMVFYEYLAFVSYGLQGRLFPQSISEVTSLQLLKYNPISL
>NC_019738.1|WP_015181795.1|2078207_2078831_+|Eco29kI-family-restriction-endonuclease
MLEIFRIPPDLSESLIAFCSKQDCYNLQELNALKADLSQYVGVYILYYRGDFSMYELIKQANLNSCCMPIYVGKAAPSGRRTGRTTIGSTLYGRLSEHKKSIQAVDNLSVEDFQFKVAAMDIDLVSWGEAVLIRHFNPIWNWEISGFGIHDPGSGRAGQKRSVWDQLHPGRTFATKFSVANNSIDVNLLAVKIAEHCQRIKEKLGCT
>NC_019738.1|WP_041780602.1|2076992_2078183_+|DNA-cytosine-methyltransferase
MNSVELFTGAGGLAIGISNAGFRHQAAIERDKDACLTIRSNQQRGIQAVADWPVFQADVSQFDFTTLQVKGEIDLLAGGPPCQPFSQGGKHQGWDDSRDMFPQFFRAVRELKPKAILVENVKGLLRSSFSQYFEYIILQLTYPEIVQKPGEDWVDHLSRLERHHTVGRHDGLSYRVVFRNLNAADYGIPQKRDRVFIVGFRSDLGVEWSFPAPTHSQEAMLWEQWVTGDYWERHQVPLCERPEVPRKQCSSLYNLQSSLFPPLTKPWRTVRDAIWDLPVPGSEEGFSKVLNHVVIPGARKYPGHTGSPLDEPAKTLKAGVHGVPGGENMLAFHTGEVRYFTVREAARLQTFPDEYFFPHCWTQTMRQLGNAVPVALAEMIASSIRTHLLRVRAIQV
>NC_019738.1|WP_041779953.1|2074548_2076678_+|DNA-helicase-RecQ
MYQLQSLEEALKHFFGYDAFRPGQRQIVEEALAQRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLIALMQDQVDALVDNGIGATFLNSTLSWDDVRSRELAILNGKIKLLYVAPERLLGEKFLPFLEKVRAQIGISAFAIDEAHCVSEWGHDFRPEYRQMKQLRQRYPDIPILALTATATKRVQQDILEQLTLRQPGIHIASFNRPNLYYEVQPKERHSYNQLLKKIKSHKGSGIVYCLSRRAVDEVAFRLQKDGIDALPYHAGMSDEARATNQTRFIRDDVQVMVATIAFGMGINKPDVRFVIHYDLPHNLERYYQESGRAGRDGEPAHCTLFFGAGNIRTIDYLIEQKPDPKEQRVARQQLRQVIDYAEGTDCRRTIQLRYFGERFKGNCGNCDNCRNPKPVEDWTIEAQKFLSCVARCKERFGMAHIIDVLRGSRKQKIEQYGHHLLSTYGIGKDRSADDWKMLGRSLLHQGLLDETTDGYRILKLNKLSWEVLRSQRTVEIAITQTAVAKALAEINPRSAEAEMLLERLRKLRKQIADAHSVAPYVVFADSSLRLMAQQQPQTLEAFAKISGVVTNKVNQYGDKFVSEIRAFCQEQKLPIPLPANTHMVTLQYYQQGLSVEEIAQKRGFTPRTIVTHLSELLEMKQPVDLNRLVVPERQKIILQGIQVVGESSLKTLREHVGEEYSYEEIQLVRAWWRKEKS
>NC_019738.1|WP_155897964.1|2074360_2074528_-|hypothetical-protein
MMRLLYQPQMNTVCLHPGRIGYLGKPCNEKCDRPVLIEAIAFHKLIDQKLLIYCK
>NC_019738.1|WP_015181802.1|2087549_2089421_-|ABC-transporter-permease
MQLNFLDRIGDWNPQLFREIKGRLNVRNIAIAVASSLLGQILLFLFWLNQLPHYPYYQNQPYCRLQKTFLAAQNQSYKLNDQYRQLQAQFKIYSNPKNYDLEKIQQLKGSIAEVKEKIQHVQGILKNDLCPSDAIDIPLWWHDHYPKMFMSLSVFVLFIMLGVGTYMLISNLANEERRGTLNFIRLSPQSTLSVLGGKLLGVPILLYLAAIIAVPFHLWLGFSAQIPLAEICTFYAVLIASCAFFYSAALLFGLVTPWLGGFQSWLGSGAVLLFLLMVNFKPIENTLLDWLNLFSPVVVLPYLVNRMGTEYTGGNFPFSMGKILNWEWFNLPIGATGIGLAIFALLHYGLWTTWIWQALNRHFHNPNSTILSKHQSYWLVGCFEVVTLGFAMGDPRGNFWVSPYSFLTNPVLLAFFNGVLFIGLIAVLAPQRQALQDWARYRREKVATRKGFWNRALVQDLLWGEKSPELLAIALNLAIAMTPFLVWITFLPGDAVDKTKALLAVGFFVSLVMIYASVAQLMLLMKTNKRSLWAVGTIAALLVVPPMSLSILGIEPVENATLWLLSTFPWAAIEHAATTTGLMVLLGEWTVLVLLNVRLTRQLQRAGESQTKAMLAGRPVLPN
>NC_019738.1|WP_015181803.1|2089504_2090455_-|ABC-transporter-ATP-binding-protein
MSKELAISTRGLTKQFDRHIAVNDVDLQIESGEVYGLIGPNGAGKTTLIRMLAAAEEPTTGEIFINGDRLLRDHSNPTLKRRLGYLPDDYPLYDDLTVWDYLDYFARLYRLREPLRTQRLREVLELVQLTNKRNSLISTLSRGMKQRLSLARTIIHEPILLLLDEPVSGLDPIARMQFREIIKTLQEAGMTILISSHVLSDLAELCSSVGIMELGYLVESASLQELYRRLARQHIVMSTLGNLDALTAELKNHPWVEEWEVIPGSKNVRVHFSGTPEDSAKLLRSLVESGIPLTEFHCTQEDLETIFLKLGHQQAS
>NC_019738.1|WP_081594713.1|2090821_2091502_+|hypothetical-protein
MLYPCPCCGYMTLNQEPPGTYLICPICFWEDDAEQDFSSNRVSLRQAQRNFIEFGACEREWLKDVRHPTSNDQRAPGWETIDILAEKTRLLLIEKITAAFDGVSRQNGISLHAARALDDYSSLEEAKKIGREMDRDTQWQEVPDKWLMQFQDIFPFLDPKGFRYYIPAYMVWSLKEPKASSSNSLSSLMWALENKSRHFQPHLEILNQEQLQVVSDYIDFVNNYIY
>NC_019738.1|WP_015181805.1|2091503_2093849_-|PAS-domain-S-box-protein
MSSLLNKLLSLLTIRRKEYLTIDRDFNILETSMGIQRFAESPEEVTKGQDVRLGFPELLGLEETLLDILEGRQMNFEIQAIARSSEQGNPIYIDICIIKNYLDEDSNHYLIIFLEEVTERMILEQNLVQSSNEKSLLLSALTASKAYIETIIVSIAEALIVTTPSGMIKTINRATQYLFGYSEEELIGQPLSILTCEDGVLLAATQSPLLFQETLNVVEVICKTKTGEKLAIAFSCSAIQTDVEGVQNYIYVGRDVTERQRSQKRLAVQYATTRILSESATPSEAIPKILQAIGENLLWDLGECWTVEVHNSTPQLRCLDTWVRPSLSISELIEKSRQTILVPTVGLVGHVWDIASGYWSFDIVEDIHFLRSEQAAIAGLQGAFAVPIQSDGEVLGVITFFSCEKQPRDEFLLQVMVGIGSQVGQFIKRKQAEAALAESEERYRDLFENATDLIQSCDLKGQFLYVNRAWRETLGYSEAQVYRMNLFDILHPDCKASFLESLSLAIGGEKIDQIQAAFISQNGTKISVEGNINCKFVEGKPVATRAIFRDITQRLQAEQALRYQQAQTERLLLNILPEPIADRLKHDTRTIAEDFAEVSVMFADIVGFTQIAARLRPIELINLLNQVFSAFDRLSEKHGLEKIKTVGDAYMVVGGLPVRRADHAVAIAEMALDMQAAISQFRQETGKEFNIRIGINTGPVVAGVIGIKKFSYDLWGDTVNIASRMESHGVPGKIHVTAVTYERLQEQYLFEKRGVIPVKGKGEMTTYFLKGRKSTFSEDAL
>NC_019738.1|WP_015181806.1|2094207_2094903_-|3-oxoacyl-ACP-reductase-FabG
MKGKQVLLTGGTGGLGMGVTSVVLAQGAIVTIPYIVDSEIEGLKERLSPTDFSKIRFVSVDLSHEAAVERLVEDMERVDVLIHLVGGFSMGKTHEYSYEQWKKDFDLNLNTTFLVCKHSLKKMLEHGYGRIVTVGSRGAVQPGGQLAAYCASKAGVVALTKAIADETKGTNITANSVLPSVIDTPANRQAMGSEEADQWVKPESLAQVICFLASEAAKDMRGAAIPVYGSI
>NC_019738.1|WP_015181807.1|2095018_2095765_-|DUF882-domain-containing-protein
MHFPKLTGFTGTIEIERINDRELAQEIQTLLVKGKFLNPGKLTFEQTKQAFDRFKQDFHLGYPGLLGESTAKILLDLHDPVDEDSPSNRPQDMPVPPETKISAPDRGRPITIPKLEVVYLGEPILKGGHFSWAEATKNGTRIPASVGVVDGILKVAEAMEEVRDYMGGKSITINSWYRDPASNRAAGGATKSRHLSGDAVDFVVSGVHPKETHRRLESWWGSRGGIASASCFTHLDCRGYAARWSYGF
>NC_019738.1|WP_155897966.1|2095820_2095958_+|hypothetical-protein
MKDHSLVSNLIGDIKADSCRDRVSVSEALARALRRPADRSSLGNL
>NC_019738.1|WP_081594714.1|2097620_2098052_+|lysozyme
MNAAGMRILKECEGLYLNSYKCPAGVWTIGYGCTKGIRPGMTITEAEAEEMLRKELTEFEKGVERILSHIPLNENQFSALVSLTYNCGMEPITEGMTIRRKLEARDYRGAAEGFLLWNKGGGRVLPGLVKRREMERKLFLTEV
>NC_019738.1|WP_015181809.1|2098054_2098252_+|hypothetical-protein
MEQDYSERYSEPYSDSYRAPRSETEILIERLDKLTMTLEKQHENHDRLMSLLERQMTVIERLLLR
>NC_019738.1|WP_015181810.1|2098664_2099681_+|helix-turn-helix-domain-containing-protein
MVMQPTYGNGVIENQTIEISQEGLRLILNQIEAELINSEVYRRTMAGLQTMLGEASSTAQILVKAVGREAVRLTFQQVIKQYNVVPVTTANTHQAGQEKSDAAERVEDNSWEQKLQEGAGLEEATQPFNFNSKQMGEPKPPKKFTKAEMTAQKVAQERGEMLRKVGQQLLEARLERSLSLEQLHNQTLVPPHHIVALESGHIEQLPEDVYVRGFIRRMAHALGLNGSALIASIPEPDLSKAAVPSWHNSIAVPEFQVNSMHLYLGYTALIAGAVGGLSLMSKQASPGVSVTPEPAGSSQAMPSPKMERTEKTNKPGLQSNQTGVKAGAGIAPPEAMSF

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Crispr_ID: NC_019738_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_8

2127069-2127163

Orphan

Consensus_repeat	Method
GAACAAAGAGGATGCTACCAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_8

>merge|NC_019738|8|2127069-2127163|CRISPRCasFinder
GAACAAAGAGGATGCTACCAAGACAGGCGACGCCGTGAAGGAAGATGAGAAATCCACCACAGGTAAAACCGAGAACAAAGAGGATGCTACCAAGA

>NC_019738|8|7|2127069-2127163|CRISPRCasFinder
GAACAAAGAGGATGCTACCAAGA	CAGGCGACGCCGTGAAGGAAGATGAGAAATCCACCACAGGTAAAACCGA
GAACAAAGAGGATGCTACCAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015181843.1\|2138198_2139587_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NC_019738.1\|WP_015181839.1\|2134290_2134722_+\|DUF2809-domain-containing-protein	unknown	unknown	gnl\|CDD\|378530
NC_019738.1\|WP_015181838.1\|2130391_2134033_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_019738.1\|WP_041779957.1\|2119379_2120009_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223477
NC_019738.1\|WP_015181836.1\|2128085_2128808_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NC_019738.1\|WP_041780611.1\|2116066_2116852_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NC_019738.1\|WP_015181825.1\|2117016_2117169_+\|DUF2256-domain-containing-protein	unknown	unknown	gnl\|CDD\|378353
NC_019738.1\|WP_015181831.1\|2124119_2125136_+\|PRC-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|368352
NC_019738.1\|WP_015181827.1\|2118344_2118893_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_015181826.1\|2117303_2118248_+\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|271340
NC_019738.1\|WP_015181840.1\|2134752_2135472_+\|transaldolase	unknown	unknown	gnl\|CDD\|188643
NC_019738.1\|WP_015181832.1\|2125179_2125959_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|378389
NC_019738.1\|WP_015181835.1\|2127467_2128076_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NC_019738.1\|WP_015181837.1\|2128851_2130183_-\|murein-transglycosylase-A	unknown	unknown	gnl\|CDD\|225377
NC_019738.1\|WP_081594715.1\|2114074_2115859_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_019738.1\|WP_015181830.1\|2120295_2124045_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274009
NC_019738.1\|WP_015181841.1\|2135519_2136626_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NC_019738.1\|WP_051055862.1\|2125971_2126595_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237125
NC_019738.1\|WP_015181844.1\|2139636_2139876_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015181842.1\|2136812_2137997_+\|NAD(P)H-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl\|CDD\|180969

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015181843.1\|2138198_2139587_+\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	2.28695e-93
NC_019738.1\|WP_015181839.1\|2134290_2134722_+\|DUF2809-domain-containing-protein	gnl\|CDD\|378530	pfam10990, DUF2809, Protein of unknown function (DUF2809). Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.	5.73622e-27
NC_019738.1\|WP_015181838.1\|2130391_2134033_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	5.47347e-114
NC_019738.1\|WP_041779957.1\|2119379_2120009_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.43166e-45
NC_019738.1\|WP_015181836.1\|2128085_2128808_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	5.49784e-80
NC_019738.1\|WP_041780611.1\|2116066_2116852_-\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.31369e-96
NC_019738.1\|WP_015181825.1\|2117016_2117169_+\|DUF2256-domain-containing-protein	gnl\|CDD\|378353	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256). Members of this family of hypothetical bacterial proteins have no known function.	5.78702e-18
NC_019738.1\|WP_015181831.1\|2124119_2125136_+\|PRC-barrel-domain-containing-protein	gnl\|CDD\|368352	pfam05239, PRC, PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.	0.000404723
NC_019738.1\|WP_015181827.1\|2118344_2118893_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.77769e-21
NC_019738.1\|WP_015181826.1\|2117303_2118248_+\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|271340	cd14949, Asparaginase_2_like_3, Uncharacterized bacterial subfamily of the L-Asparaginase type 2-like enzymes, an Ntn-hydrolase family. The wider family of Asparaginase 2-like enzymes includes Glycosylasparaginase, Taspase 1, and L-Asparaginase type 2. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.	4.25524e-158
NC_019738.1\|WP_015181840.1\|2134752_2135472_+\|transaldolase	gnl\|CDD\|188643	cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea. Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.	8.52235e-52
NC_019738.1\|WP_015181832.1\|2125179_2125959_-\|anti-sigma-factor	gnl\|CDD\|378389	pfam10099, RskA, Anti-sigma-K factor rskA. This domain, formerly known as DUF2337, is the anti-sigma-K factor, RskA. In Mycobacterium tuberculosis the protein positively regulates expression of the antigenic proteins MPB70 and MPB83.	2.229e-25
NC_019738.1\|WP_015181835.1\|2127467_2128076_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	6.56415e-51
NC_019738.1\|WP_015181837.1\|2128851_2130183_-\|murein-transglycosylase-A	gnl\|CDD\|225377	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane].	1.57489e-126
NC_019738.1\|WP_081594715.1\|2114074_2115859_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.13259e-71
NC_019738.1\|WP_015181830.1\|2120295_2124045_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NC_019738.1\|WP_015181841.1\|2135519_2136626_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	5.55309e-171
NC_019738.1\|WP_051055862.1\|2125971_2126595_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237125	PRK12519, PRK12519, RNA polymerase sigma factor; Provisional.	2.01363e-98
NC_019738.1\|WP_015181842.1\|2136812_2137997_+\|NAD(P)H-quinone-oxidoreductase-subunit-H	gnl\|CDD\|180969	PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H; Validated.	0

>NC_019738.1|WP_051055862.1|2125971_2126595_-|sigma-70-family-RNA-polymerase-sigma-factor
MMGSGLFYEKPTDLKGIGTPEDCHDLQSDEELIQALKAGQSSALGILYDRYASLVYRLALRILTNPQEAEDLTQEIFLNLWRSGSYNPSRGSLSSFLTTLTRSRAIDKIRSRGSNLKFIQRWSQMMVNETSSLTPFESAALSQRSHQVRQALTQLPEKQRQVLEMAYYEGLSQSEIAAQLGIPLGTIKTWSRQGLLNLRKNLRDFIE
>NC_019738.1|WP_015181832.1|2125179_2125959_-|anti-sigma-factor
MTGPLLPERLEELMAGYVLGNLSSEEAEELNQLLTEHPELATEVQQLQEVLEVLPYALPEVEPPQHLRQAILNTTSPDPTAALITAKPRRWKQLMRSPLFWSRLIGGAVVLLALILGFDNYRIRLKFTTMQAKVARQKDVIALLQKPDTHVVPLKGMAQASAATGSMLMTPSESQAVLILQNLPVLPPGEFYQLWSVQNDEKIPWGQFRTNKQGTVFVKLYRPSDFEVTALAITVEVTPEPTTPAGPMVMAGNLTINNQ
>NC_019738.1|WP_015181831.1|2124119_2125136_+|PRC-barrel-domain-containing-protein
MTTEQNRQRSDILNTQVVTIDTAKRLGVVKELLVDIDRREVVALGLRDNLLALAGMPRYMLLSSIRRVGDTILVDDEDVIEDVEVEAYSTLINSEVITETGELLGRVRDFKFNIEDAKVSSLIIASIGLPQIPDQVISTYELPIDEIVSSGPNRLIVFEGAEERLVQLTVGVLERLGIGRPPWEREEEETYYTPVTRPENQLGTGIPVRTPIAQPIQTVTPVEERWDDDDWREEPEPEPIPLRREAPPPKYAKQELEQDNWGDDEWDDAPGRSTQYQKPAYTEPPRYERERDYADDYDDYEVEGDAWDDEVDSEPYQAPRINIPEKTKAPEYEEEAGY
>NC_019738.1|WP_015181830.1|2120295_2124045_+|chromosome-segregation-protein-SMC
MVHIKRVELTNFKSFGGTTSIPLLPGFTVVSGPNGSGKSNILDALLFCLGLASSKGMRAERLPDLVNHDKERRGTVEASVTATFDLSDAPDALLDDEEENDDVGAVPPYPHQNQENPESDSCEPLDPPQPPTPPPTAPPLTKGGTQGGLEWSVTRRLRVTQQGTYTSNYYINGESCTLTELHEQLNRLRVYPEGYNVVLQGDVTSIISMNSRERREIIDELAGVAAFDRKIVQTKETLAQVKEREDDCRIIEQELVAQRDRLASDRLKAEKYQKLRADLLEKQQWEAVLKWRFLQQQEGKLREQIEAGDREEAQLTSQLTALEAEIRQTTGELDQLNSRVKALGEEEQIAVASTLATQEAERRQLQNRQQELAENIEQTERRLKRTQEEIQQYEQTLQQLNEQKHHVETQDLEALRTARDEVQHSLNQSREEANAIASASEVWVQQQTVLNRQIETLLQTIDPQRTEQAQLQERHNQLSRQIEEQTQLLQTLEPEITTKQAQSTDLETQLASFSQQAQTLAQSLVTAEQELQIQQQTQTRLLAEQREKQRQLDKLEAQAQAQQEAQGTYATKVILHSDLPGVCGLVAQLGRVEPRYQLALETAAGARLGNLVVEDDGVAAAGIELLKQKRAGRATFLPLNKIQAPRFTETAALRYVNGFIDYAVHLIDCDPRYRDIFAYVFGNTVVFETLNTARPYLGKHRIVTLEGEILEMSGAMTGGSSSHRSELHFGTSDATESAEVALLRNRLQDIEQILSRCGELIHQGVARVKQLTQELTEAKAKRSETQLRLEQLNKEIKSLTAQLEQVRSLLAKNTHELSTASDRLQALSLNLPTQEAQLVELRQQLAQLEQSQTPNEWQQIQGMIKGWEAQLSEREQALRAAEKQLLDLDSQQQRTKEKITEGYRQVAEYQTQHQSVQEQLAAISHQLVGMNEAITKTQGTLTQLEQQLGEVKQERDRVEQHLRERHLFQQQQSWQRQKLQETQVARREELSSLQAQLQLQQTELPDPLPELPEHWQTETPNLRTPDLPSLLEHLQKEIRNAQKRLQAMEPVNMLALEEYDRTQNRLSELSEKLATLEAERTELLLRIENFTTLRFRAFKEAFDAINENFQSIFAELSDGDGYLQLDDPEDPFNGGLNLVAHPKGKPVQRLASMSGGEKSLTALSFIFALQRYRPSPFYAFDEVDMFLDGANVERLARMIKQQAMLAQFIVVSLRRPMIESSERTIGVTQARGAYTQVLGLKLPPKSAIR
>NC_019738.1|WP_041779957.1|2119379_2120009_+|dienelactone-hydrolase-family-protein
MSLNFISVPPAKGQSPVGLVVCLHGFTGNSQQLAPFAPMFALPEYQFLFPDAPYSSPYGGRMWYNLRSRDDQGLTASRQQLTDWLKSLESSTGVPLSRTVLAGFSQGGAMTLEVGLTLPLAGLVCISGYLHSKPTPISGKSFPPVLIVHGRQDPMVPLSSAQSAREALKAVGVSVEYQEFDMGHIVIPAVFGVMRNFVMDTVQASQVRH
>NC_019738.1|WP_015181827.1|2118344_2118893_-|Uma2-family-endonuclease
MVATEILSNSPKISSLEDWMQNPPDSTEWVNGELVEKTGMTLKHSKVQGNLYFYWRSYKDSSGQGGEVYTDVPCRTNKQGRFPDVAYLTPELVTQYGDAKVLPQSFPLSAEIVSPTDLAEDVIAKAQEYLQSGGEEVWLIYPENRWIIVATENSRQIFISGEVVNTQKILLGFSISVDELLA
>NC_019738.1|WP_015181826.1|2117303_2118248_+|isoaspartyl-peptidase/L-asparaginase
MQPKLIIHGGAGSSLKGKAGADVVRKSLYKVIEEVYSLLLTGADATEAVVLGCQLLEDDPRFNAGTGSVLQSDGQIRMSASLMQGSVQRFSGVINVSRVQNPINLAEFLQSSPDRVLSDYGSGELMRELNTPTYNPLTDLRLQEWMLERQGNFEKEMAGVVAEKELVTASEDGRGTIGVVVLDSQGRLAVGTSTGGKGFERIGRVSDSAMPAGNYASRHAAVSCTGIGEDIIDECLAARIVVRVTDGLSLVEAMQRSFTEAKEHGRDFAAISLDATGAIAWGKTSQVLLAAYHDGNQIGDTLEWQNEELIGFVS
>NC_019738.1|WP_015181825.1|2117016_2117169_+|DUF2256-domain-containing-protein
MARQRSKSDLPQKTCLVCGLPFTWRKKWADCWDEVKYCSERCRRRKSKAS
>NC_019738.1|WP_041780611.1|2116066_2116852_-|RNA-methyltransferase
MKLDNVKIILVEPAGPLNVGSVARVMKNMGLHQLVLVNPQCDPFGIEARQMAVHGRDILDAAQQVPTLPDALKGCQRAIATTARSRALPTPLEPPRTALPWLLEPGITSALIFGREDRGLSNVELNYAQRFVGIPSSSEYASLNLAQAVAICCYELYQSTQTLSSPAHILNRVPPPQTGETAPLDVLEGYYEHLETVLLKIGYLYPHTAQSRLEKFRRLLNRATPTSEEVSMLRGILRQMEWALQSLPKSDVVEGNSSQES
>NC_019738.1|WP_081594715.1|2114074_2115859_-|serine-hydrolase
MRLRRRQRRTLQKQIFEQEVPPLPSPQPPQRSFGKSILRRLSTVPRSTRPPLEPPRPRIPRPQRIQPSSSIHSSVPPLRPVSAINPQRPSTTAQESTFLPQSNPREFRTQTPGYRREEQGSNLSARVNPWQVQPKTPSPLSPLPRVGSQTPQSLDTHQGAKRREGASLPIRREVRAEGSALSALNVLKNSSKRRREHHPFRTAAPVAAPISEGQASYRRVSVKSGSSTAKNPIKGTAKRSPKPKRPVHPFVYIIRLLILGIGIGAIAGTLLSALHPATQASVKVNNDQAKPQVKDTPSPASPVTPLALTQEILSLKSQIQTLAANNPKLQPGVFIVDINTGTYIDINSRSPVPAASTIKVPILVALFKEVDEGKIRLDESLTLQSEMIATGSGNLQYQKPGAKFTVLELATKMITISDNTATNMLIARLGGIEALNQRFRAWGLTTTVLRNALPDLEGTNTASPQELAALMAMINQGQLVSLPSRDRILSIMQSNEINSLLPQGLGSGAIIAHKTGNIGALLADVGLVNMPSGKSYIISVMVQRPFNDDSAQELIRKISKTAYEYFNQPQVSPSTSSMPSDTTATGNRAVALDQ
>NC_019738.1|WP_015181835.1|2127467_2128076_+|cytochrome-b/b6-domain-containing-protein
MDSPIPSQASQFRPWPNQAILVKIFHWVNLISLCLMMTSGLQIYNANPVFGGRAGWHFPPIFLLGGWLAGGRHWHFAAMWIFSLNLLGYGLYIVITRRWKHRFLGSNDLKALQNSNNKKRVTYAWHRLAYTIIIPILLLAILSGLGMYKPAQLHWIVDFFGSWQALRIVHFTSVPIVVIFALIHSLLGLKVGGQRLLESIFW
>NC_019738.1|WP_015181836.1|2128085_2128808_+|molybdopterin-dependent-oxidoreductase
MNLIQVPRRSFSRRQFLQLSGLSSMGLVLGGCASSLFEDLVGKTVEPLNQSVETLLLNPQKPVPEFPASAIEPNALIVNTFDFTPKIDVNTFHLTIDGEVNNPISVSMEQIQQLPLTAMTIRHVCVEGWAAIVQWGGVRLRELVTLAQPKADVKYIYFQSADGYYESWDIASALHPQTLMAYQKNSQPLSIDNGAPLRLASPIKLGYKQSKWVTRITLVSHLFPRRGYWEDQGYEWFAGL
>NC_019738.1|WP_015181837.1|2128851_2130183_-|murein-transglycosylase-A
MKRTLICYTLSLGVGIGIILYTLFPSSRDKDEALQQGKVATSSLTEVSTLPCLLLSSSPNWFQNDYQPMSDQDRFRAPVRPKKAAISFPPCSTQNLGVDEQLWGELGQSGDKPALLAAMAQSLRYLQSSTAAAAYQKYRVSGVTRERVYRSLVRFRQLVLASRSPEQLEAAVKREFVFYQSVGKDGLGNVLFTAYYEPVYAASRVPTPEYRYPLYRRPSNLEAWPKPHPTREQLEGKDGLQSSKGKLRGLELFWLRDRLQAYMIHIQGSARLVLPDGKQTTVGYAGHTAYNYSSIGRALADDGKLPLEGMTMPKILQYFQDNPAELNIYIPRDKSFVFFQENHGEPAMGSISVPLTASRSIATDKSLMPPGALALIRAPFPFKNAKGGMDFRTVSRYVLDQDTGGAIKGPGRVDYFLGTGEEAGDRAGVTVADGQLYYLLLKK
>NC_019738.1|WP_015181838.1|2130391_2134033_-|hypothetical-protein
MAVQKQRRKRGVVLTSVGFKKLQEARAQAEFGDNGGERYTLEELSDRTQLAPYTVAKVLAREEGVDKQTLILFFRAFNLELADGDYDRVNSNREQPNQTTILPTRCSWGEAIDVSVFFGRTDELAKLEYWILQQRCRLIALVGMGGIGKTALSVKLAEQIQNQFEFVIWRSLRNAPPLPEILAHWIECLSDGETDLSEQRNQRISQLIDYLRSSRCLLILDNVESILDSGAHVGRYRDGYEEYGELLRRVGEASHQSCLILTAREKPKEIACLEGGHLPVRSLPLMGLNVVEGQEIFRYQNHFNGSESDWNVLIHRYIGNPLALRIVATTIQDLFNNSISEFLEQGTTVFGDIRDLLDQHFHRLSPLEMQIMYWLALNREPISLTELREDIVAPCSQAKLLEALESLLRRSLIEKATPAFLAKNQLLFTLQPVVMEYLTEKFIEDSIQEIITYLENHPSSSIRQFKDYAFIKATAKDYVRETQIRLILNPMIQQLLYLLGSPSNIQHQLCQLLNQLRGKSPIETGYAAGNALNLMNQLPIDLRGQDFSHLTVWQAYLCDVDLHQVNFAYSDLSKSVFAENLENVLSVTFSPDAKILATGDTNGDICLWQVVDGQRLLNCQGHAGGVLCVAFSPDGKTLASASYDHTVRLWDASTGQCLNVLTGHDLWVWSVVFSPDGKRVASGAVDSTVRLWDITTGQCLHVLHDDSQSVLSVAFSPDGKRLISGSIDHQVRLWDVATGRCLHVYRGHTRWVWSVAFSPDGKTIASGSQDHTIRMWDVATGDCIQVCHGHTNWVWSVAFSPDGQLLASGSTDHTVKLWDTPTGYCLKTLQGHISWIWSVAFAPQRQGNSPDSYILASSSIDQTVKLWDVATGRCLRTVQGRCSWIRALAWSPDGKILASSSYNQGVKLWDTTTGQCLKTFQGHSDTLLNAVLSVSFSPKNRILASGSYGQTVKLWDIETGQCLRTIQGLNGGGWSVAFSPDGQYLATGSDRTIRLWDVDTGQCLKTWTGHADIVFSVAFSPDGSMLASGSEDTTVRIWHVATGECLMVLQGHISWIQCVAWSPDGQILASGCSDETIKIWDVQTGECLRGWQEDTHGYGIWSIAFSPNNRTLASVGTDQNVRLWDASTGECLNLLQGHDQGLFSVAFSPNGHRLASGSRDDAIKIWDVQTGECLKTLRSHRPYEGMNITRVTGLTEVAIANLKALGAVDVANP
>NC_019738.1|WP_015181839.1|2134290_2134722_+|DUF2809-domain-containing-protein
MASLKSQQYRFLKYRLALLISLLIIVPLGYMIRFHGAAPEWMNDLFGSIAYEIFLILLVALLFPKASPLWTAIGVCLATCMVEFLQLWHPPFLEAMRATLPGRLVLGNSFTWSDFLSYFIGSFFGWAWMWGLRQQTIVRSGVL
>NC_019738.1|WP_015181840.1|2134752_2135472_+|transaldolase
MIYSNYPVLPEAHTPRIRLFLDTADITQWQNWLPMGLFYGVTTNPLLLEKAQVTCSVKSLKELAQEAFNLGAKEVQLQTWGTSVDALVKTGERLAGIDDRVVVKVPITQVGTQAASRLIAQGIQITLTGVYAVPQVLIAAALGANYAAPYLGRINDLGRNGCDDLVAMQKAIVGVGSTTRILVASIRSVDDMAFLATQGLDTFTFPEAIASAFFDVTATHQAATDFEQAARRMGAEEIS
>NC_019738.1|WP_015181841.1|2135519_2136626_+|glutathione-S-transferase-family-protein
MPQLTTPPKDNPILTEPQTETAKPKKKGKSLPPKLIIKLGKFVWTTLWHIMMSNLAPRNKQGAYIRPSSQFRNFIGTEADNPYPPAAGRYHLYVGLSCPWAHRTLVVRALKGLEDAISVSIVSPSPIEGGWVFNEEELGCRTLAELYQLAKPGYTGRSTVPVLWDSQTKTIVNNESSEIIVMLNSQFNEFAKNPTLDLYPEEQRDKMDEWNEKIYHSVNNGVYRCGFAQTQEAYNQVCNELFATLDEIDAALETSRYLCGDRVTLADVRLFTTLFRFDVAYYGIFKCNRRRIRDYQNLGAYLRDVYQLPGVADTCNLEAVKQDYYGNLFPLNPGGIIPSGPDMTNLLEPHDRENVGKESVVSVKTDKL
>NC_019738.1|WP_015181842.1|2136812_2137997_+|NAD(P)H-quinone-oxidoreductase-subunit-H
MAMIETKTQPMILNMGPHHPSTHGCFRLILTLDGEDVIDCEPVLGYLHRGMEKIAENRTNLMFVPYVSRWDYAAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGSFLLDVGAGTPLFYIFREREMIYDLWEATSGQRLINNNYFRIGGVAADLPYGWVDKCQDFCDYFAPKVDEYERLITNNPIFRRRMEGIGTITREEAINWGLSGPMLRGSGVKWDLRKVDHYECYDDFDWDVQWETAGDCLARYLVRIREMRESVKIIHQALQGLPGGAYENLEAKRMVEGKKSQWHDFDYQFIAKKIAPTFKIPSGEHYVRIETGKGEVGIFLIGDDNVFPWRWKIRTADFNNLQVLPQLLRGVKVADIMPILGSIDIIMGSVDR
>NC_019738.1|WP_015181843.1|2138198_2139587_+|cytochrome-P450
MKSINLPPSPKGHFLFGILNEYVRDSLGFLTQSAQEYGDIVYFPGIRFVGYKAYFINHPDYIEEVLATKTHQFGKFNQGLGIIGRILGNGIVTSEGDFWRHQRRLIQPAFHRERIAAYGEVMVAYTNRMLTRWQAGEIHDVHEDMMRLTLEIAAKTLFDADMADQADEVGQALAFAIAYFDQWQRNPIAMLLPENVPTPGNLRSRKVIQRLDAIAYELIRQRRETGQDTGDLLSVLLHTQYEDGSPVTDQQVRDEVMTILLAGHDTTALAMTWMLYLLSQHPEVEAKLVTEWQTVLNGRDPTFADLPQLRYTDSVVKEAMRLYPPVWGMARRANTDSEIGGYPIPKGSVIILSQWVMQRDSRYFNQPEVFNPDRWADGLAQRLPTYAYFPFGGGPRVCIGKSFAQMEAVLLLATMAQKFQFTLVPGQKVEPWPAFTLRPKQGIKMVLSERSLQDTPVLSSNL
>NC_019738.1|WP_015181844.1|2139636_2139876_-|hypothetical-protein
MDKLTPQERALRDRILNWQSPTVDDLKNIRILEQMGSQMLESILQYCPHNHERDEAIDCLEILLTWTRKSIVRGNGVDH

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Crispr_ID: NC_019738_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_9

2818455-2818579

Orphan

Consensus_repeat	Method
GGGTCAGCTTAGATAAAGACCCTAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019738_9

>merge|NC_019738|9|2818455-2818579|CRISPRCasFinder
GGGTCAGCTTAAATAAAGACCCTGAGCAGGAGACTGCAAGTAGGGTCAGCTTAGATAAAGACCCTAACCATACATAAGTTGGGTTTAATTTTTCCAATGGGGTCAGCTTAGATAAAGACCTTAAC

>NC_019738|9|8|2818455-2818579|CRISPRCasFinder
GGGTCAGCTTAAATAAAGACCCTGAG	CAGGAGACTGCAAGTA
GGGTCAGCTTAGATAAAGACCCTAAC	CATACATAAGTTGGGTTTAATTTTTCCAATG
GGGTCAGCTTAGATAAAGACCTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015182400.1\|2816754_2817201_+\|photosystem-II-protein-PsbQ	unknown	unknown	gnl\|CDD\|274404
NC_019738.1\|WP_015182397.1\|2811196_2811838_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_019738.1\|WP_015182393.1\|2806870_2807464_-\|DUF3177-family-protein	unknown	unknown	gnl\|CDD\|371497
NC_019738.1\|WP_015182410.1\|2831429_2832278_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|178633
NC_019738.1\|WP_015182398.1\|2811921_2815983_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|368641
NC_019738.1\|WP_015182399.1\|2816089_2816497_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041780722.1\|2809816_2810920_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NC_019738.1\|WP_015182411.1\|2832476_2832908_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182408.1\|2829404_2830934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226699
NC_019738.1\|WP_015182405.1\|2826436_2827654_+\|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NC_019738.1\|WP_015182406.1\|2827909_2828566_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226696
NC_019738.1\|WP_015182409.1\|2830993_2831347_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182394.1\|2807680_2807908_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367139
NC_019738.1\|WP_172642232.1\|2807436_2807706_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182407.1\|2828583_2829363_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NC_019738.1\|WP_015182404.1\|2822574_2826111_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226702
NC_019738.1\|WP_015182401.1\|2817206_2818313_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|334462
NC_019738.1\|WP_015182402.1\|2818613_2821976_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|237426
NC_019738.1\|WP_015182403.1\|2822003_2822465_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_019738.1\|WP_015182395.1\|2808281_2809529_+\|FIST-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|226833

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015182400.1\|2816754_2817201_+\|photosystem-II-protein-PsbQ	gnl\|CDD\|274404	TIGR03042, hypothetical_protein, photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology. [Energy metabolism, Photosynthesis].	2.04732e-51
NC_019738.1\|WP_015182397.1\|2811196_2811838_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	3.63969e-65
NC_019738.1\|WP_015182393.1\|2806870_2807464_-\|DUF3177-family-protein	gnl\|CDD\|371497	pfam11375, DUF3177, Protein of unknown function (DUF3177). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.26738e-111
NC_019738.1\|WP_015182410.1\|2831429_2832278_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|178633	PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.	2.39761e-49
NC_019738.1\|WP_015182398.1\|2811921_2815983_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	7.92643e-24
NC_019738.1\|WP_015182404.1\|2822574_2826111_-\|PAS-domain-S-box-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	4.24619e-58
NC_019738.1\|WP_015182401.1\|2817206_2818313_+\|FAD-binding-oxidoreductase	gnl\|CDD\|334462	pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.	2.01006e-58
NC_019738.1\|WP_015182408.1\|2829404_2830934_+\|hypothetical-protein	gnl\|CDD\|226699	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only].	3.57011e-56
NC_019738.1\|WP_015182405.1\|2826436_2827654_+\|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NC_019738.1\|WP_015182406.1\|2827909_2828566_+\|VWA-domain-containing-protein	gnl\|CDD\|226696	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only].	1.1423e-71
NC_019738.1\|WP_015182394.1\|2807680_2807908_-\|hypothetical-protein	gnl\|CDD\|367139	pfam02672, CP12, CP12 domain. The function of this domain is unknown, it does contain three conserved cysteines and a histidine, that suggests this may be a zinc binding domain (Bateman A pers. observation). This domain is found associated with CBS domains in some proteins pfam00571.	2.43967e-25
NC_019738.1\|WP_015182407.1\|2828583_2829363_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	1.6419e-63
NC_019738.1\|WP_041780722.1\|2809816_2810920_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	7.93157e-29
NC_019738.1\|WP_015182402.1\|2818613_2821976_-\|PAS-domain-S-box-protein	gnl\|CDD\|237426	PRK13558, PRK13558, bacterio-opsin activator; Provisional.	3.19735e-28
NC_019738.1\|WP_015182403.1\|2822003_2822465_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.92185e-65
NC_019738.1\|WP_015182395.1\|2808281_2809529_+\|FIST-C-terminal-domain-containing-protein	gnl\|CDD\|226833	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown].	4.05259e-173

>NC_019738.1|WP_015182401.1|2817206_2818313_+|FAD-binding-oxidoreductase
MSRVAIIGCGIVGAAIAYELSLIRGLEITVLERQQPAQESTGAALGVLMGAISKKKGRAWQLRQASMQRYETLIPELEALTGRPIPFNRRGIVMLCFAEDDLASWQKLVQTRQSQGWQLEIWDAQDVHSHCPQLHPDNIAGAIYSPQDRQVDPTVLTQALVTAAQSNGVTFEFGVTVEDVQSQVLDGSVTRECIQLHTQLGQIDVDFVVVAAGLGSTPITVALEQAIDIRPVLGQALHLRVEHPLGHPDFQPVITGHDVHIVPIGEREYWVGATVEFPDASGDVMAEPTLLEQVRQEAIAFCPALAQATILRTWSGQRPRPEGRPAPIMGQLPGYNNVLLATGHYRNGVLLAPATALVIRDLIVSGMS
>NC_019738.1|WP_015182400.1|2816754_2817201_+|photosystem-II-protein-PsbQ
MLRKSYRSLLAVMLTLVMTLLVSCSSPTVTKPPTYTPDKIAQIQKYASTVTDLRETMPTLATSIQNRNWTEVGSFIHGPLGELRQKMSYLTRELLPQDQKAAREAAQDLFTRLESIDLATESGNYQKAVDNYRLAIKDFDAFLQLIPE
>NC_019738.1|WP_015182399.1|2816089_2816497_-|hypothetical-protein
MNEGNLFSISFHQGEVAFPYNLKIHVTQVNQDDSPKYSYHFVAFNQDNHGNPNLQFIPAFFAALTYLEYDANFSGLEFKYIVPDENETEIYFERIVRVDNPIFDSLLVTGYVGKDEVVISSLSCPPQRETEAQTQ
>NC_019738.1|WP_015182398.1|2811921_2815983_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MIRPVFRFWRAGYLLLGCLATASSVQAQIVPDDTLPVNSWVTPGCTVCTIDGGTHRGVNLFHSFSEFSVPTGGEAFFNNALQIQNIFSRVTGNSVSNIDGLLRANGTASLFFLNPNGVIFGQNARLEIGGSFFATTGNSFKFSDGSEFSAIKPQAPPLLTINVTPGVQWGTNQPGATITNRGNLAVGQDLTLAAGNLDLQGQLVAGRNLTLQATDTVKVRDSSTSPFIASSGGTLLVQGNQKVDIFALNHPDSGLFSGGNMVLRSANTLGGDAHYWSGGSFRIEKLDGSLGDLYSPNDPIIRSLGDVSFDIYQGTSLHILAGGEVNIGTVIITGAETGAAGVDYLQETVPLSNGSEVSINGRLQPTLDIRAGVDPAFIGVPGITGFNFPRDRLLGWALGTNTPTSANITIGDVWIVPPNGLVFITNQYQPNTTLPGGDITITGAGVFGDGIDASSRRGNGGSVILDSRRNIGITNSGIDSFSEAGNAGSILLNAKDTISLTSSFVTSATSGGGKGGDVTINAGQLLLKDGSQILVGTLGAGIGGNLIVNSRGSIVLTNSIIDSSSEAGNAGSIFLNAKDTISLTSSFVASQTFGAGKGGDVTIKTGQLLVRDGSQILVDTFGVGTGGNLVVNASESVQLNGVLPINPLAGSSLSASTEGTGKAGNITITTPSLHIQDGGRIIVSTEGAGDAGSLTVNASESVEIIDLSPEGLIVSALFAQANRGATGNAGDLTINTKHLLVRDGAQVAVSNLGTEGAGGILTVNASESVEVIGIGISANGGEVTSGLFARTEGAGDAKDLTINTRQLIVQDGAEISASTKGAGDGGDLIVNASESIQLIGESSGFFTQVNRGATGNAGDLTINTKHLLVRDGAQVSSGNLGEGNGGNLIVNAFESVKLIGTSPDGLVPSGLFAVTKAVGDAGDLMITTPTLLVQQGAWMSAFTSGVGSAGSILVKDANLVLLSNNSGISTESVSAGLAGDVTLDTQQLILEQGSQLTAATVSSQGGSIILQNLETLEILNSSISASTETGTAGNIVIGSSESVQLYGVSRLSVEATEGGTAGDIIVKTNEMSVTGGAQVTVSSPQGQAGNLSITANSLTLNRGTLSAVTGTSSPGGGANITLSGLDFLRMDNESLISASALNNANGGNVTIDSTLIVATPPIGPEGSDIIANAEQGNGGRVNITTQGLFGIQFRPQRTPKNDITVSSTFGLSGTFALNTPGVDPSRGLAQLPTNLVDASQQIDQRCTPKAANQGGSFTVTGRGGIPPSPNDTLQAESLITPNWVILDFETENNTPPAPTTPSNSAPKQLVEAQGWRINEQGQVVLTASAPNVTPHHTWQTPVECPAEANPVPE
>NC_019738.1|WP_015182397.1|2811196_2811838_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MPKVRVRQHVNPLSKKYQTPVQPPLWNCVYAQPAQPLHLDIGCARGEFLLSMATLEPNWNFLGLEIREPLVEQANAKASELGLRNLYYLFGNVNNSLKPLLESVEVGMLRRVTLQFPDPWFKKRQAKRRVVQPELVDTLATYLMDRGEVFLQSDVEAVAVEMCDRFEAHPAFQKQGADLWLATNPLPVPTEREVSTLSRGEPVYRALFVRREL
>NC_019738.1|WP_041780722.1|2809816_2810920_-|metallophosphoesterase
MGLNFRFAVVSDPHIGLAHTIWDHPNRFHLVEVSIPALELILEHLNQQNIDFLLLPGDLTQHGERDNHAWLQKRLSQLPFPVYVVPGNHDVPNLLSNEHSIGLKDFPYYYHQLGYDNPDQLYYTTEILPGVQLIGLNSNQFDASGKQLGCLDEQQLVWLEQVLQESQDKLVLVMVHHNVVEHLPYQSRHPMGRRYMLDNAPALLKILKQAGVNLVFTGHLHVQDVAYHEGVYDITTGSLVSYPHPYRIFELRTDEQGQRWLQIESHRVTSVPGWENLPQKSRELMGDRSHPFMLKLLTTEPLNLPLADAEKLAPSLRYFWANIAAGDFLFDFPEFFPEARRYFEAFSAKSSDGEPALIDNHTTLLLK
>NC_019738.1|WP_015182395.1|2808281_2809529_+|FIST-C-terminal-domain-containing-protein
MANPIQWANALSTCPSLEAAIAEVVDRAQKSLTATPDLGLVFISSAYASEYSRLMALLQKQLSVPVIIGCGGSGIIGMNSQGETQEIEGEPALSLSLAHLPDVQVQAFHIPGDGLPDLDSPPNTWVDLIGVPPQEEPHFILLADPFSAINDLLQGLDFAYPGSSKVGGMTSAGAMGVQSALFCNYKLYREGTVGVALSGNIVLETIVAQGCRPIGQTYQVTACERNIVLELATQDNVEKTSSEIESRRPLEVLRDLLQSLSEEDRQLAQHSLFVGVARDEFKQQLGHGDFLIRNLLGVDPRVGAIAIGDRVRPGQRIQFHLRDARTSEEDLELLLHRYQKDTSGTTEAAGALMFACLGRGKGLYGKPDFDSQLFGRYLSNIQLSGFFCNGEIGPVGGSTFLHGYTSVFGICRAKH
>NC_019738.1|WP_015182394.1|2807680_2807908_-|hypothetical-protein
MSNNIEEKIQQEREAARAACDINGAESGACAAAWDVVEELQAEAAHQRQKAPKKNAFEQYCDANPDADECRVYED
>NC_019738.1|WP_172642232.1|2807436_2807706_-|hypothetical-protein
MNVGCTKTNIQSLNVSFSRFRYISQWAQVAGTPNLRIPALCCTGLRLGGSTPTQPNAIQPDWVESCAYWNNIDKGLFGNEQCKTNFFDP
>NC_019738.1|WP_015182393.1|2806870_2807464_-|DUF3177-family-protein
MQDEFLRSLVWTDYRLAVLITVIIPLILLIWAFVQKVDSMVRLLIIYWRVASLLAITVYLFIASLPIGFVSGWFGRILIPIALWFWVDVNEDIEDQPQRPLKLALTSWRWAITAYCILGALASIPFLSCAFLPGSIKTPFCQVWLQPPLLFKQYFHNDSRPGFLGFLGVTGLIAYVLYLSYFVLIRLGKQGRSAMEQ
>NC_019738.1|WP_015182402.1|2818613_2821976_-|PAS-domain-S-box-protein
MLRILLLEDSLLDTELIQAYLTNGGIEGELVQVETRTDFESALKTGSFNLILSDYSLPAFDGIAALDIAQILCPDVPFIFVSATLGEELAIETLKRGATDYVLKQRLDRLVPAVKRALRETQERVERQRTQAELCQLTAELERRVEERTAQLAQANQSLQAEIAERKKTEERLRLLESVAVTANDAIMITEAEPIEEPGPRIIYVNEAFTRMTGYTQAEVLGKTPRILQGPKSPCAQLDQFRSALKQWQPTVVELINYRKDGSEFWVEISTVPVANAEGWYTHWVAVERDITERKRAEDTLRLSDQILQQMPDAVLLTDLNLNIQKWTGKAEELFGYTAQEVLGTKATFLMHSGITPTMTERIIRIIQETGTFCGEMICLHKDGSEVPIEVTAKALYDATGNPVGFLSINRDITERKRAEKQKEQLIREQAARLEAEVQGLKSAFLAEASTVLASSLDYETTLASVAKLAVPFIADWCAVDILEKNQTIRRVAIAHLDPAKVKLAWELNQRYPEDLYGATGLAAILRTGESAIATEILDSDLVAIAQDAQHLQSLRELCLKSCIGVPLVARGRTLGAITFATAESGRCYSSDELSLVEDLACRAAMAVDNAQLYRDTQDARRIAEETAKRTASLQSLTASLSEALSLAQVGEVVVNQSLAALRANAGFIALLHERDRTLELVNALGYPQELLKNWNRFPLTAEVPITDAVKTNKAIFIESREVFAERYPHLTTQYSDSLHHSWAAIPLNVDGHTLGGIGFSFVNAQRFSAEDCAFMQALAQQCAQAIERARAYAAERQARADSEAANCMKDEFLAILSHELRTPLNAMLGWTQLLRTRTFDPLKMTKALETIDRNTKSLAALIEDILDVSGIIMGKLQLSVAPCELISVIEAAIDTIRPAAEAKLIQVECFLDASVELVWGDANRLQQVVWNLLSNAVKFTPKGGRVEIRLERVEQWERSVQELQVEGNHPRTISQETVNSDPLTRDHRIPKPATSSISSGFPSEYPSPSAIESRLTDHSSLTQVSNAYAQIRVTDTGKGISANFLPYVFDRFRQENSSSTRSHGGLGLGLALVRYLVEQHGGTVQAFSPGEDKGATFIVQLPLLVAQPAEPIPTTEVPP
>NC_019738.1|WP_015182403.1|2822003_2822465_-|response-regulator
MHELKRILLVEDSPNDVELILTALSENRLANEVVVVRDGEEALDYLYRKGVFKLRMEGNPVVVLLDLKLPKVDGLEVLAQIKSDPELKAVPVVVLTSSREEQDLINSYNLGTNAYVVKPVDFHEFVDVIKELGLFWAVVNQPPPGSVPSRRTI
>NC_019738.1|WP_015182404.1|2822574_2826111_-|PAS-domain-S-box-protein
MVRATQSQMQPYGVAVLAVGLAMLLMRLLNSWVTMSHSPFLMFFGAVMVSAWYGGMGAGLFATFLSALLSTYFIDSPSHGLAFSLSNSLRLSVFVLEGILISGLCETLLTTNRQLQVSVRKLRESEERYRRVLDTAYEGIWTVDAQGQINYVNQRIAEILGYTMQNMLARPMFDFMDEEAQSEANHYLERQQQGIKEQYDFRFRHQDGSSVWAIVSTSPICSETGEFQGAIAMITDVSERKRAEESLREQAATLQNQQSWLESVLNFLPSPLLLIEPGTARVTFANQAADQMAGGEFPKNKPSEEYHTVYYCTDAKGERIPDDQMPGVRVARGEQLKGFEMDWHTPEGIRSLIIFADTLSPMYGHPPTCVLVFQDISERKRVEQALELRLQQQAIVAQLSQRALSGIELSTLIDEVPILVAQSLDVEYCKVLELLPDGKALLLRSGVGWHPGLVGHATVGSETHSQAGYTLLSSQPVIVEDLRKETRFNGPPLLHEHQVISGMSVIIHGQNRPFGVFGVHTTRKQKFSQNDINFLQAVANVLAIAIERKRAEEAMRESQELFERFMSHAPVVAFIKDEQGRFLYVNSLLERTWNRPLADWLGKTDFDLFPAEQAQQWRDNDTAVLAGDKAVQLLETSVNQDRVQSWLSFKFPFIDASGRRFLAGMSLDISDRKRLEDELRQSEAKFRRLFDANIVGIIFSDFSGKILEANDAFLEMVGYTREDLHAGRVCWDTMTPSEYKPLDELAIAELRTSGVCTAFEKEYIRQDGSRVPVLLIGALLEGEPEQAVSFILDLSDRKQALAELRESESRFRNMADTAPVLIWMSGTDKLCNYFNQPWLDFTGRTMEQEFGNGWAEGVHPDDYQRCLNTYMNAFDARQSFRMDYRLRRFDGEYRWVLDTGIPRFTPDGGFLGYIGSCIDISDRVLAEEEVVKLNHSLEQRVKERTAQLEAANQELESFSYSVSHDLRAPLRHINGFVDLLQKQAATTLDERSLRYLSIITETTKQAGKLVDDLLSFSRMGRTEMRYIKVNMTLLIQEVKRDIEQDICGRNITWQIEDLPQVYGDPSMLRLVVHNLIDNAVKYTAKRDRAEIKIGSTETEDEFVFFVRDNGVGFDMRYVHKLFGVFQRLHSFQEFEGTGIGLANVKRIIDRHKGRTWAESVVKKGASFYFSLPKLNNKI
>NC_019738.1|WP_015182405.1|2826436_2827654_+|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MQTLSTPQTAPTAPEFDTTIHRRKTRPVKVGNITIGGGYPVVVQSMINEDTLDVEGSVAAIRRLHEIGCEIVRVTVPSMAHAKALAEIKQKLIQTYQEVPLVADVHHNGMKIALEVAKHVDKVRINPGLYVFEKPKADRNEYTQAEFEEIGEKIRETLEPLVISLRDQGKALRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNIVISLKASRAPVMVAAYRLMVKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGLAPLLADGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGFISLYRGREEIKKVPEDQGVEELINLIKADGRWVDP
>NC_019738.1|WP_015182406.1|2827909_2828566_+|VWA-domain-containing-protein
MPVGLPEFAENPENRCPVILLLDTSASMAGQPIQELNRGMGLFKEDLLKDTQASLSAEVAIVSFGPVKLLQDFVTVDSFTPPPLTADGVTPMGQAIDYALDLLETRKATYKENGIQYYRPWVFLITDGAPTDNWQRAAQRVREGESQGKFSFFAVAVEGADINTLQQIAPPERPPVTLRGLDFSALFVWLSTSMKRVSSGKIGEAVPLPPVGWGQINT
>NC_019738.1|WP_015182407.1|2828583_2829363_+|protein-phosphatase-2C-domain-containing-protein
MAWRAVVRSSVGTRHQKQQQPCQDYGNYCILNQNVIVGAVADGAGSAKYADVGAKLAVEAVITIVREIANSPQPKENLSHPLNEQEARKLFSKIVAEVVATLEEKAIHENYAIADLACTLLVVVATPDWVAAMQIGDGFIVVGLQGEAYQLLFQPDKGEFVNQTTFVTSTHALDEMQVDVLLGQHKFICAATDGLEKVAIRMSDWTPFLPFFKPLEEYLWESHHPEQEDEYIKSFLNSERLNARTDDDKTLLLCLYAQN
>NC_019738.1|WP_015182408.1|2829404_2830934_+|hypothetical-protein
MRILTCVSTGNPICLTKQIASSGEGAVWQTERSGYLAKLYHSFEDERIEKLKVMVAHPPKDPNAHLNHVSLAWPEELLKDRNGTILGFLMPAIAGAKELLDVYSSKRRQQLKLEVDWKFLHITALNIASIIEAIHAEGYVLGDIKPQNILVNNRALPSIIDTDSFQVYHPHKSQVYRCLVGSEGFTPVELLGKDFRTTNQAEIHDSFRLAVIIHLLLFGDKPFKGKWIGTGDSPDPTELLRRGFWPYASNSLIKPGPFTIPLEIVHPEIQRCFLRCFNEGHTNPSLRPTAREWRKALSVAVEHLTICGRVDSHYYSTIYGKCYWCDRKLDKGLDIFASPIPKIQPPSALPRTPPPKPVYPATSTHPGVTVAPVITQPKKVSSSKFAQSSVGLAPFFTPPKKVSSSKFPQRTVTSIPSKTRAIIGWTTGTGLATGGILWLIRTFLGDSSETFKDWVVSYPPEVMQFPFIRIPPENLLDVIQPVQWLSGGVGTFIVGFMMGFVIITMRCRR
>NC_019738.1|WP_015182409.1|2830993_2831347_+|hypothetical-protein
MNQVKNRDNGCGFLTLLLLLFIWSIGTIAFWTVNIFAAIGTTFILLIDSLANIFTIIGIKNPAIGWLLLGCFFGGSLGLSQGLKRTGHSSQVYKVYLVAAAVFFMLQIVAYSKWQPR
>NC_019738.1|WP_015182410.1|2831429_2832278_-|alpha/beta-fold-hydrolase
MSISEQSIEVGSLKWFYREANPIGRSEALPVLLLHGLPSHSYCWTSLMPDLAEKGLRAIAPDWIGSGLSAKPDKRDFAYTPDAFINALREFLNALEIDRFHLVVQGFLASVGLQYALRYPEQIERIAILNTPLTSDAKLPWTMQQWGFPFVGDMLTQDPLLVDRTLEGGSRYRISDKDLDIYRKPFLKSSDPGRSLVATIKNMQWKSSMAEIESGFRNWKQPTLIVWGMKDPWLPVELAQQFAKGIQNVELVQLEESGHYPQDHWSEKVSESLLLFLRRQAL
>NC_019738.1|WP_015182411.1|2832476_2832908_+|hypothetical-protein
MNAVEQARSLEFTTKIAAIVNLFKSEFPDAKADLKPWQNDPDTQELVDPDSIDIGFHLPGWSRKFQCRSILVQIRLYEDPIMGCRRAIGIEAAGFDHRGKAWRCSTIQNWQFVGEGEPVPEVQAKLKYFCREAINILSQIGNS

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Crispr_ID: NC_019738_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_10

2916270-2917173

Orphan

I-D,II-B

Consensus_repeat	Method
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	PILER-CR
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	CRT

12 spacers

The CRISPR arrays of NC_019738_10

>merge|NC_019738|10|2916270-2917173|PILER-CR,CRISPRCasFinder,CRT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACGTGCAGGTGTTCAAGGGTGGAAATACCTTTGAGATTGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACGCTTCAGTAGAAACCGACTGGACAAAATACATGGGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTTCAAACCATTGAAGACTTGGTAAAAAAGGTTATCGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTGCCAGTTGATGCCGGTGGCTCGTGCCACCTCATGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTAAACACTTTAAATCAGTTGGGGGGAGAACCAGCCGGGGGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACGGCTGCTCGGACCAGATATCGGCGACATACTACAAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACAAAAAACAAGCAAAACACAAAGGAATTGCAAAAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACGAAAAAAGCCGGTGAGCGGCAGTAGACCCCGAGACATGGGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACATACTTTTCCGACACCTCCATCACTTCTGTAGGTGGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACGCAAGGACAATGTCGATTACTTCGTCGGGCTTTAAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTGCTGCACCCATTGGACAAGGGTTGTCAGGCTCCAAGGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACATTGCCTAGGGCAACCAAGTTATTCGGCTAAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC

>NC_019738|10|3|2916270-2917173|PILER-CR
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GTGCAGGTGTTCAAGGGTGGAAATACCTTTGAGATT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GCTTCAGTAGAAACCGACTGGACAAAATACATGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTCAAACCATTGAAGACTTGGTAAAAAAGGTTATC
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TGCCAGTTGATGCCGGTGGCTCGTGCCACCTCAT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TAAACACTTTAAATCAGTTGGGGGGAGAACCAGCCGGGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GGCTGCTCGGACCAGATATCGGCGACATACTACAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	AAAAAACAAGCAAAACACAAAGGAATTGCAAAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GAAAAAAGCCGGTGAGCGGCAGTAGACCCCGAGACATGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATACTTTTCCGACACCTCCATCACTTCTGTAGGTG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GCAAGGACAATGTCGATTACTTCGTCGGGCTTTAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TGCTGCACCCATTGGACAAGGGTTGTCAGGCTCCAAG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATTGCCTAGGGCAACCAAGTTATTCGGCTAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC

>NC_019738|10|9|2916270-2917173|CRISPRCasFinder
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GTGCAGGTGTTCAAGGGTGGAAATACCTTTGAGATT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GCTTCAGTAGAAACCGACTGGACAAAATACATGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTCAAACCATTGAAGACTTGGTAAAAAAGGTTATC
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TGCCAGTTGATGCCGGTGGCTCGTGCCACCTCAT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TAAACACTTTAAATCAGTTGGGGGGAGAACCAGCCGGGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GGCTGCTCGGACCAGATATCGGCGACATACTACAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	AAAAAACAAGCAAAACACAAAGGAATTGCAAAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GAAAAAAGCCGGTGAGCGGCAGTAGACCCCGAGACATGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATACTTTTCCGACACCTCCATCACTTCTGTAGGTG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GCAAGGACAATGTCGATTACTTCGTCGGGCTTTAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TGCTGCACCCATTGGACAAGGGTTGTCAGGCTCCAAG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATTGCCTAGGGCAACCAAGTTATTCGGCTAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC

>NC_019738|10|2|2916270-2917173|CRT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GTGCAGGTGTTCAAGGGTGGAAATACCTTTGAGATT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GCTTCAGTAGAAACCGACTGGACAAAATACATGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTCAAACCATTGAAGACTTGGTAAAAAAGGTTATC
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TGCCAGTTGATGCCGGTGGCTCGTGCCACCTCAT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TAAACACTTTAAATCAGTTGGGGGGAGAACCAGCCGGGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GGCTGCTCGGACCAGATATCGGCGACATACTACAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	AAAAAACAAGCAAAACACAAAGGAATTGCAAAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GAAAAAAGCCGGTGAGCGGCAGTAGACCCCGAGACATGG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATACTTTTCCGACACCTCCATCACTTCTGTAGGTG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	GCAAGGACAATGTCGATTACTTCGTCGGGCTTTAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TGCTGCACCCATTGGACAAGGGTTGTCAGGCTCCAAG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATTGCCTAGGGCAACCAAGTTATTCGGCTAA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015182475.1\|2903194_2904556_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NC_019738.1\|WP_015182491.1\|2928740_2929562_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|130252
NC_019738.1\|WP_015182480.1\|2910461_2912063_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019738.1\|WP_015182478.1\|2905947_2906925_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182489.1\|2926417_2927272_+\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NC_019738.1\|WP_015182482.1\|2914968_2915757_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378945
NC_019738.1\|WP_081594721.1\|2899102_2901148_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NC_019738.1\|WP_041780741.1\|2918492_2919314_-\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|379721
NC_019738.1\|WP_015182479.1\|2907308_2910311_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_019738.1\|WP_015182485.1\|2920866_2921133_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182488.1\|2924962_2926066_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NC_019738.1\|WP_015182492.1\|2929941_2930658_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182487.1\|2923656_2924844_+\|DUF3095-domain-containing-protein	unknown	unknown	gnl\|CDD\|371453
NC_019738.1\|WP_015182473.1\|2902540_2902780_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_019738.1\|WP_015182490.1\|2927287_2928691_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NC_019738.1\|WP_015182481.1\|2912444_2914109_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019738.1\|WP_015182477.1\|2905079_2905646_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_015182484.1\|2919555_2920299_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|225040
NC_019738.1\|WP_015182476.1\|2904605_2905016_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041780025.1\|2921406_2923455_-\|magnesium-chelatase-ATPase-subunit-D	unknown	unknown	gnl\|CDD\|274135

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015182475.1\|2903194_2904556_-\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	1.48905e-152
NC_019738.1\|WP_015182491.1\|2928740_2929562_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|130252	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other].	7.32513e-131
NC_019738.1\|WP_015182480.1\|2910461_2912063_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.65688e-52
NC_019738.1\|WP_015182489.1\|2926417_2927272_+\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	1.40044e-70
NC_019738.1\|WP_015182482.1\|2914968_2915757_+\|hypothetical-protein	gnl\|CDD\|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	3.93334e-07
NC_019738.1\|WP_081594721.1\|2899102_2901148_-\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.29904e-43
NC_019738.1\|WP_041780741.1\|2918492_2919314_-\|nucleotidyltransferase	gnl\|CDD\|379721	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase. This family is likely to be an uncharacterized group of nucleotidyltransferases.	1.48052e-11
NC_019738.1\|WP_015182473.1\|2902540_2902780_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.19871e-16
NC_019738.1\|WP_015182488.1\|2924962_2926066_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	5.43403e-63
NC_019738.1\|WP_015182487.1\|2923656_2924844_+\|DUF3095-domain-containing-protein	gnl\|CDD\|371453	pfam11294, DUF3095, Protein of unknown function (DUF3095). Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.	0
NC_019738.1\|WP_041780025.1\|2921406_2923455_-\|magnesium-chelatase-ATPase-subunit-D	gnl\|CDD\|274135	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.	0
NC_019738.1\|WP_015182490.1\|2927287_2928691_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	3.72947e-70
NC_019738.1\|WP_015182481.1\|2912444_2914109_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	7.44687e-80
NC_019738.1\|WP_015182477.1\|2905079_2905646_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	8.83007e-33
NC_019738.1\|WP_015182484.1\|2919555_2920299_+\|metallophosphoesterase	gnl\|CDD\|225040	COG2129, COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only].	9.245e-18
NC_019738.1\|WP_015182479.1\|2907308_2910311_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0

>NC_019738.1|WP_015182482.1|2914968_2915757_+|hypothetical-protein
MAVQSKERSGTDSMREAMATANQIAVSAHQWATAVAQVAADNVANTTAAVGKTVVPAAQQFVEQGTETVGKIVTPIAENPLVKYASKVPGINVLMAALGQVDVDKAQAEVDKLRQDYPLESPAQIAHRIIVDTAMKGGGIGLLTNFVPPLALALFGVELAAVTALQAEMVYRIAAAYGFSLKDPARRGEVLAIFGLSVGGSGVLKGGLSFVELLPIIGAGVGASSNAALLYSLGQVACQFYEGKKNSTKAVEVSVVGNGANL
>NC_019738.1|WP_015182481.1|2912444_2914109_+|serine/threonine-protein-kinase
MNLLVGKTLQGGKYTLEQELGRGGFGVTYKATHHYLEQVVVIKTLNESLQLHPEFPRFQHRFQDEAKALALCVHPNIVRVSDFFVEAEWPYMVMDYVAGLTLQALVFPGRPLDEATAIYYIRQVGEALKVVHQKGLLHRDIKPANIILRQGTQEVVLIDFGIARGFNTDSTQTHTNLVSDGYAPLEQYLVKEKRTPASDVYGLAATLYALLTAQVPTPSVIRDRQPMPAPRELQPQMSAAVNQAIMRGMAVEARFRPANVEEWLSLLPNPQLAQVNGTPIASSTHTGTTAPINAQQLAQLKKTALSSPPLPLFKRLGVRGMAIGGVAAIATGLVAVGAVRHQSQPKPPTATPTPTVEPSASPIPLPSTEANKEETSTRNSEETSEKSTQSPSPIQSQSSVKQNRSSSSSSASSEEKPIRRTYPRKTYRQKSDPPKESQSTPDSSSSSPSQSSRRKRIQSPSNPTNNSSPPVSKPTPVSSPPAPQPQVQRPSGKTQAPASEAPLLPPEPISKPKPVENSVPLPPPEAVQPKKSAPDNPSGDNQSRSGEDASGGIN
>NC_019738.1|WP_015182480.1|2910461_2912063_-|protein-kinase
MGRYKVIRELGRNQEGGRITYLATDTSLNPPQQVVIKEFRFAALGANWSGFKAYEREISILQQLEHPRIPRYLDSFETKSGFCLVQEYKNALSLAVRCSFTPEDIKKIAESVLEILVYLQKLTPPVIHRDIKPENIVVDKQLNAYLVDFGFARIRSGELAVSSVAAGTPGFMPPEEQFGRSLTKASDLYSLGATLICLLTGTRSQDVGNLIDDYYRFNFKKLVPKLNPRFISCLEKMVEPNVKQRYANALDALQALKPIQVLGGATGLESLVTAVKSRMSTTGIGLATLGIFALFMINLIDFNRENSVKIENSTLLLSPVRSSQSSLVGYWNFDQCSSAGKPMLANELGSQIQGTMLQGVTCEQGRFGYAAFFDGVDDLIEIPDQPSFHFTNQMTVAAWVKPLRVSGLQTIVNKWYAMDSYMLLIENGNFVFTVAIPGGQWGTSIKVSAKVTPDVWTQWTHIAGVYDGQMLLLYINGQLVASTAASGRLQDSDRPISIGNHPSWNAFKGSIDEVRLYNVALNASQVSQLLSNP
>NC_019738.1|WP_015182479.1|2907308_2910311_-|excinuclease-ABC-subunit-UvrA
MPEPIDLSDALPGETLPATSMHTNGRHHSTSNNLNEIRIRGARQHNLKNVDLELPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQLDKPDVDVIEGLSPAISIDQKSTSNNPRSTVGTVTEIYDYLRLLFGRAGEPHCPICDRNIAPQTIDQMCDRILELPDRTRFQILAPVVRGKKGTHKKLLSSLASEGFVRVRVNGEVRELSDSIELDKNYTHNIEVVVDRLIKKPDLQERLTDSLSTCLKRTGGIAVVEVLNDTSVESEDAVNHGSTITENPTNSEDSHHKSAKELVFSENFACPEHGAVMEELSPRLFSFNSPYGACPHCHGLGSLRTFSPELVVPDPEAPVYAAIAPWSDKDNSYYLSLLYSVGQAYGFEIQTRWNHLTDEQKQVLLYGAEKAIWIEERNDYRHYAGVIKILQKQYDETGSDLQKQKLEQYLIDQPCEVCQGKRLKPEALAVRLGQFRIRDLTSVSIQESRERIEQLQLSDRQAQIGDLALREIKARLQFLLDVGLDYLTLDRAAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNGRLLQTLTKLRDLGNTLIVVEHDEDTIRAADYLVDIGPGAGIHGGQIVAQGNLETLLGAEESLTGAYLSGRRVIETPAERRKGNGRSLVIKDAHRNNLQHITVEIPLGKLVCITGVSGSGKSTLVNELLYPALQHHLTRKVPFPKELEKIKGLNAIDKAIVIDQSPIGRTPRSNPATYTGIFDAIREIFAQTIEAKARGYKAGQFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCEVCKGARYNRETLQVKYKGHSIADVLNMTVEEALEVFKNIPRASTRLQTLLDVGLGYIHLGQPAPTLSGGEAQRVKLASELARRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDKGNSILVIEHNLDVIRCADWVIDLGPEGGDKGGEVIVVGTPEDVAQNQRSYTGQYLQGVLQQHPPVVCKV
>NC_019738.1|WP_015182478.1|2905947_2906925_-|hypothetical-protein
MTQSEETHIPLDKICTDDGFASREEENPSIIQRFAQDIREGYNYPSIMCFWDGKDYKLVYGLNLLKAAIEARQDTILVDKHPDPSGQLNNIQKDRIVKKMLSLLDSMGEEEKTNWPWCKIAERCGVDEGTVRNKAKEVGYKAPKIIKRAAKNGSLHLVDTSRLGQSSKLKSKGFNWTAIDDKQFEELVYEIVNAKKPIKIDWRSGPGGKGRDIEARFTITGSLGEFREERYFLEAKHFKKQGVNSGHISDAFTWSQAERPTVLVIAVSSHLTPDCRDIYIPSWKKNHPGIEVVVWERKDIEERILSQKSTKELAIRFKLIPKSMR
>NC_019738.1|WP_015182477.1|2905079_2905646_-|Uma2-family-endonuclease
MPMMTVTDLEQLQATLNQAGYDYQLELEDGKIIVVGPSDIDSSEIGVLFSRLLANWVYPRRLGRVFDSAGGFILPNTDLKAPDVSFVRASRLRQRRRYFAEMVPDLVVEIKSQSDRIKPLEEKIQMFLSLGAIVGILIDPDKETVTVYRPTDESTVLGNGEILTIPELFPGWELPIAEVWPPVFDEEE
>NC_019738.1|WP_015182476.1|2904605_2905016_-|hypothetical-protein
MIDPLRRLQYLPWRSLLQVSGLTVILVTLAEFLLSLGTLHSSLIRNTLSLLFAPPLGIVIFMAAAVGVGTLAVYLLERFYPQVLINTAILWALIPCLLLFVLIKSLLPIPGLVNLTYPQLFGIIVGVFWKGRPYWR
>NC_019738.1|WP_015182475.1|2903194_2904556_-|MATE-family-efflux-transporter
MTEKPLKSRVIAEIKQYLILAIPLAGAQLSQAATTFVDTIMMGILGSQIIAAGALGAITFHLLITIGSAIISAVSPLVAEAYGAGRIEQVGRVVGQGLWLSIILAIPATLLIWHSGSLLRLLGQEPENVILAAAYLRAIAWGYLPALGFAVLRSFVSSLSRPRPVIVTMIGGTLLNVVANYILAFGKFGFPALGLVGLGWASALSLWAMFASLAIYILYQPQLRVYGAFSNLHQFEAKVFGELLRVGMPIGVLAGVEGGFFTCVTFLMGQLGTTTLAAHQIALQTAVVTFMIPVGISIATTVRVGQCMGQGNPNGARLAGFVGIGMAALCMMLTGILFWTIPGKIVSLYLDTANPANAVVVNLAKTMLAVAAMFQIVDGIQVAAAGALRGLKDTQVPLLIGTLAYWGIGLPCGYTLGMVWGLGGVGLWWGFAIGLAVAAGILTWRFSIARAWR
>NC_019738.1|WP_015182473.1|2902540_2902780_-|helix-turn-helix-transcriptional-regulator
MIHWKLAVVMAERNISNKELALLIGMNPKSVSRLKVRRRLTRIDESTLNSLCKALNCQPGDLMVYEEEEAASEPNSWNF
>NC_019738.1|WP_081594721.1|2899102_2901148_-|sensor-histidine-kinase
MEKTIQANLETVSTDLAIEVRFWHQQNLNALKQLAEVAVHSDIKSSIKLQESTELLQRTFSTIDQLFVMNREGQTLSFAGIGSTIASYSELEKTITESIGMKASDLTQPSITSQVLLIDDHHAPPRLVQIVPIIRNYRLVGSVVSEIDLSHLAQLLKSFTTLREMEITLLDRQDRVITSTRLDMPTLSKFKQRQGGEIRPLNDKVYQWLPLGEMPIMMRWKKSFYVQKTSAGEKLPFQVIVAVPTQPHFIYLENLYIKSLSILLLITALALAMANVISRWLAQPLLQLAELTTDLPDKLLNQKAIHWPNSWITEMNTLVSNSQFMAELLEQKFHEINAAKEQLEQRVQERTRELSTANQELELEVSKRQRVAEALQESEALLRTQAKDLETALYELQHTQAQLIQTEKMSSLGQLVAGVAHEINNPINFIYGNLIHAQDYTQDLLRLVELYQQHCPNFLSIMQEEIEAIDLDFLKDDLPKLMDSMQVGAERIHEIVQSLRSFSRLDEAEVKAVDIHEGIDSTLMILKSRLKATLKHPGIEVIKEYGQLPLVECYPGQLNQVFMNILVNSIDSLEDKFTYNAEENRPSLDSLPWIRIYTEIVKEDWVAIRISDNGMGIKKDQSCKLFDPFFTTKPIGKGTGLGLSISYQIIVEKHGGKLYCVAEPKQGAEFMIEIPLRQTRG
>NC_019738.1|WP_041780741.1|2918492_2919314_-|nucleotidyltransferase
MMQSYKISQDDLDPQTRAFYCRSFDVLSQAQIPFLVGGGYAFKRYTKIARQTKDLDLFVHPRDCSRILEVFSQQGYHTEFPASHWLAKVFCGEDFVDIIFNCANGNGEVDDIWFEYAIEEEVLGQSVRLCPPEEMIWSKAFIMARDRFDGADIAHLIRACSENLDWSRLLQRFGSQWRVLFSHLILFGFIYPGERSRIPNWVMNELSQRLQQEVSTPTKEEKLCQGTLLSPLQYEIDVEQWGYEDARLFPKGSMTTAELCEWTAHLKTDKAKD
>NC_019738.1|WP_015182484.1|2919555_2920299_+|metallophosphoesterase
MADTPEVVRLAAVGDIHCTKTSQGNLQPLFSKITESADVLLLCGDLTDYGLPEEAHVLVKELAAVKIPTIAVFGNHDYESGNPEAIEQILCDSGVTILNGDTCEVQGIGFAGVKGFAGGFGSKALGAWGEDIIKNFVHEAVNEALKLEAALAKLETPQRIAVLHYSPIQATVEGEPPEIFPFLGSSRLEEPLTRYGVTAAFHGHAHHGHLEGRTRSNIPVYNVSMPLLKKAFPDQPAFRLLEIPTTP
>NC_019738.1|WP_015182485.1|2920866_2921133_+|hypothetical-protein
MLGEMCWLPLLGTDGDKILHLRTNPGQPWQPYTAYPQFSVPDYEIPKGTKGWATYQKLMQQKWTLIPSERALQALSLSNQNIDQRRAS
>NC_019738.1|WP_041780025.1|2921406_2923455_-|magnesium-chelatase-ATPase-subunit-D
MPAPTISSTVSTFPLTAVVGQEAIKLALLLAAVDPGLGGVAIAGRRGTAKSVMARALHALLPPIEVVKDSICNCNPSYPNEWDDYLLAQYLSGKDGTTPISTIAELPTEIIPAPFVQIPLGVTEDRLLGSVDVEQSVKQGETVFQPGLLAQAHRGVLYVDEINLLDDQIANQLLSVLTEGRNIIEREGISFQHPCKPLLIATYNPEEGPLREHLLDRIAITLSADGVLSLDQRVEAVDQAIAYAKSAQAFLEQYNADTDDLKTQIILAREWLKEVNVTHDQIAYLVNEAIRGVVQGHRAELFALRVAKACAALDGRQNVIADDLRRAVELVIVPRATQIQTPPEEQQPPPPPPPPQDDSQQEQEEQEEKEEEEDQEQEQEPPSIPEEFVFDPEGVLLDPSVLYFAQMAQRQGKSGSRSIIFSDDRGRYVKPMLPKGKVRRIAVDATLRAAAPYQVSRRKRQPGRKVIVESGDIRSKRLARKAGALVVFVVDASGSMALNRMQSAKGAVMQLLTEAYQNRDQVSLIPFRGEQAEVLLPPTRSIALARGRLERLPCGGGSPLAHGLTQAVRVGMNAKMSGDIGQVVIVAITDGRGNIPLARSLGEPMAEGEKPDIKAELLDIAARIRALGIQLLVIDTENKFVSTGFAKELAKNAGGKYYHLPKATDRAIAAMAKGAIADMKSR
>NC_019738.1|WP_015182487.1|2923656_2924844_+|DUF3095-domain-containing-protein
MFTDTFYSELPTLEHFVEITNSQNFLPVHPDWYIVITDIMGSTQAIEAGRYKDVNILGVSSIIAILNRAKHLEIPFVFGGDGASLLIPPSLFLDTKQALLATQDMAKREFNLGLRVGIVPVATVRDANYDVRVAKVRVSAKYTQAVFTGGGLTYATELVKNPETSELYSLSSSGIIPQADFSGLVCPWQDIPSQHGEILSLIVMATAHQGQEETSIYKEAIKKIYKIYGGANNFHPVDFERIRLSLNRQILYKETQVVHQSQNWWYKQLSLWQKLLGIIAIKVSIKLGLIDWQTNKKTLISDSDYQKFDDILRMVISGNSGQREKLIRYLETQYKAGKLVYGFHVSDRALMTCLVYKAQGRHTAFIDGADGGYALAAKMLKEKLKPAKGWGTGTG
>NC_019738.1|WP_015182488.1|2924962_2926066_+|YihY/virulence-factor-BrkB-family-protein
MKPKVIVELLKETFKEWQEDKASRLAAALAYYTAFSIAPLLIIAIAIAALVFGEEAARGGIEDQLRGLIGQQGAEAIEEMIKNSSKPAEGTIATIISVGFLLFGASGVFAQLQDSLNTIWEVAPKPGRGVMGFIKDRFLSFSMVLGIGFLLLVSLVLSAVLAGLNNILGGMMPGLSFLWEILNFLISFGVITLLFALIYRVLPDAKIAWGDVWFGAIITALLFTIGKTLIGLYLGNSSVGSTYGAAGSFVVLLLWVNYSAQILFFGAELTQVYANKYGSHIVPTENAVRLTEEDRVQQGIPHSSHVESMADQERNPNRSAQQTLPSPQRNRREKRNPAATALGGLMGMYQSLARLTGRKKNRNNRHR
>NC_019738.1|WP_015182489.1|2926417_2927272_+|nitrate-ABC-transporter-permease
MVCQLNLAAMFAVATQATWKRAKPLIVRDVVLLPLAGFAGVIILWWVIALFRHELMPTPPEALAKNWDYILNPFYRRGPGDLGIGWLLLASLRRVGLGFGLGAVVAIPLGFLIGMSRAALLALNPLIQIFRPVSPLVWLPIALAIFNSAEPSAVFVIFITSLWSTITNTALGVSSVSKDYLEVAQVLEMPRSRQILKIILPASLPYIFTGLRISLGIAWLVIVAVEMLTGGIGIGFFVWDEWNRLNLSSVFLAVVVIGLTGLVLDSALARLQAWVTHRPAAKQG
>NC_019738.1|WP_015182490.1|2927287_2928691_+|ABC-transporter-substrate-binding-protein
MMYNKKNRRTFLIGMGATAAGIAFSSCGISGDRSPKGMTKTALAVEPVVDPKTLEKPNLTIGFVPVNDCAPFAVAWEKGFFRKYGLNVNLSREASWGNARDGIIFGRLDAAPVVSGAVTNARTGAEGARHVPLCAAMTIHRHGNAITMNRKMWEAGVRPWQEYQGNLEAFGKDFRSYFDKLPLDERVLAVVLSSAIYEYFIRYLAAASGVNPLDEFRIIITPPPQMVSNVRIGAMQAYMVAEPWNTRAISGNEGVGFTFAQGREIWQGHPDRLLGVMESFIKENPKTYRSLVKAMIEACQYCGKPENREEVAQIISQRSFTGAAPKFTKPGIVGDYNYGGFDGQDRITNAPETTIFFDLPPHLAKVPGDHSTFLWQSESLWLMTQAARWQQIPEIPKNALEIARQGWKTDLYREIAAEMGIACPKEDYKVEPAEAFIDNKAFDPSDPVGYLKGFEIRADRPQSFFLS
>NC_019738.1|WP_015182491.1|2928740_2929562_+|ATP-binding-cassette-domain-containing-protein
MSQSTSFTANANRESNAGTGFLEIEDVFKSYPKPDGSRFVVLDGVNLTVGEEEFISVIGHSGCGKTTLIKIVAGLEKPTSGSVRLDGKEIRKPGADRMMVFQNYSLLPWLTVRENVRLAVDEVLKKATRVEKNDIVNEHLAMVKLTEAADKYPDELSGGMKQRVGVARALATRPKMLLLDEPFGALDALTKPRLQQQVLDIWESHRQAVMMITHDVDEAIFMSDRVVMMTNGPAATIGGTLNIPFSRPRDRHAMRESQEYYDLRNHILNFLDS
>NC_019738.1|WP_015182492.1|2929941_2930658_+|hypothetical-protein
MNIKSMIARLESTLNRNDLMEQLVLLPEPASADSKWTNSTQSVNLVVGYNASLSSQTALDLTMWIAHQTRLATQNHVTVQVVYVVDEIQSRKCPDLFNLADVKRSSIHPFPSGLPKTSTATMSATSVLTKPKQQELALENQRKLARKCCPKATANQSDWFEQADHILWQARCLAEEWRGSFKAHLRLGDVATELREVVDSEAATLLFLGCNSVNHPIVQQLNFNFPCSVLGVPRGLNL

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Crispr_ID: NC_019738_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_11

2962665-2962758

Orphan

Consensus_repeat	Method
AGGTCGAACCCTACAACGGAGGCCACAACTAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_11

>merge|NC_019738|11|2962665-2962758|CRISPRCasFinder
AGGTCGAACCCTACAACGGAGGCCACAACTAACACCATGCCCAGCATCATCAGCTGCATTAGGTCGAACCCTACAACAGAGGCCACAACTAACA

>NC_019738|11|10|2962665-2962758|CRISPRCasFinder
AGGTCGAACCCTACAACGGAGGCCACAACTAACA	CCATGCCCAGCATCATCAGCTGCATT
AGGTCGAACCCTACAACAGAGGCCACAACTAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_041780029.1\|2964688_2964946_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182523.1\|2965585_2966320_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019738.1\|WP_015182509.1\|2948019_2948658_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NC_019738.1\|WP_015182513.1\|2952615_2953053_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|377609
NC_019738.1\|WP_015182529.1\|2971302_2971527_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182524.1\|2966319_2967267_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|161659
NC_019738.1\|WP_015182515.1\|2953278_2954313_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NC_019738.1\|WP_041780028.1\|2947048_2947774_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182518.1\|2959736_2960303_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_155898190.1\|2948738_2949962_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133045
NC_019738.1\|WP_015182527.1\|2968685_2969303_-\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|312763
NC_019738.1\|WP_041780752.1\|2965225_2965408_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182517.1\|2956908_2959563_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_019738.1\|WP_015182525.1\|2967246_2967996_-\|phycobilisome-rod-core-linker-polypeptide	unknown	unknown	gnl\|CDD\|366093
NC_019738.1\|WP_015182512.1\|2950892_2952602_+\|D-aminoacylase	unknown	unknown	gnl\|CDD\|226179
NC_019738.1\|WP_172642278.1\|2955727_2956888_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019738.1\|WP_015182530.1\|2972530_2973049_+\|phycocyanin-subunit-beta	unknown	unknown	gnl\|CDD\|271301
NC_019738.1\|WP_015182511.1\|2949954_2950872_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199214
NC_019738.1\|WP_155897986.1\|2969444_2970728_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_019738.1\|WP_015182526.1\|2968141_2968729_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015182523.1\|2965585_2966320_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.86186e-15
NC_019738.1\|WP_015182509.1\|2948019_2948658_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	4.23878e-05
NC_019738.1\|WP_015182513.1\|2952615_2953053_+\|DUF962-domain-containing-protein	gnl\|CDD\|377609	pfam06127, DUF962, Protein of unknown function (DUF962). This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein YGL010W has been found to be non-essential for cell growth.	6.81247e-08
NC_019738.1\|WP_015182524.1\|2966319_2967267_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|161659	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family. In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP\|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine. [Protein synthesis, tRNA and rRNA base modification].	3.3399e-122
NC_019738.1\|WP_015182515.1\|2953278_2954313_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	1.03587e-41
NC_019738.1\|WP_015182511.1\|2949954_2950872_+\|hypothetical-protein	gnl\|CDD\|199214	cd10146, LabA_like_C, C-terminal domain of LabA_like proteins. This C-terminal domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain an N-terminal LabA-like domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain) has been shown to play a role in cyanobacterial circadian timing. LabA-like C-terminal domains described here may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains).	7.25664e-10
NC_019738.1\|WP_015182518.1\|2959736_2960303_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	6.63327e-46
NC_019738.1\|WP_155898190.1\|2948738_2949962_+\|glycosyltransferase	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	6.48383e-51
NC_019738.1\|WP_015182527.1\|2968685_2969303_-\|phycobiliprotein-lyase	gnl\|CDD\|312763	pfam09367, CpeS, CpeS-like protein. This family, that includes CpeS proteins, is functionally uncharacterized.	1.15659e-97
NC_019738.1\|WP_155897986.1\|2969444_2970728_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.30948e-13
NC_019738.1\|WP_015182517.1\|2956908_2959563_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	3.68623e-30
NC_019738.1\|WP_015182525.1\|2967246_2967996_-\|phycobilisome-rod-core-linker-polypeptide	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	3.21115e-60
NC_019738.1\|WP_015182512.1\|2950892_2952602_+\|D-aminoacylase	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.57363e-106
NC_019738.1\|WP_172642278.1\|2955727_2956888_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.43373e-42
NC_019738.1\|WP_015182530.1\|2972530_2973049_+\|phycocyanin-subunit-beta	gnl\|CDD\|271301	cd14768, PC_PEC_beta, Beta subunits of phycoerythrin and phycoerythrocyanin; phycobilisome rod components. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	1.58997e-108

>NC_019738.1|WP_015182518.1|2959736_2960303_-|Uma2-family-endonuclease
MNHITLTIPNLTSKDFVKLCEVNRDLRLERAATGEVIIMPPTTPWTGKKNGEVYGQLWLWNRQTGLGKTFDSSTGFTLPNGAVKSPDATWVSNERWNTLTEDEQQEFSRLSPDFVVELRSKNDTLKELQEKMREYIDNGVRLGWLIDPKTNKVEIYKPGQDVVVLNSPSTISGEDVLPGFVLDLTQIW
>NC_019738.1|WP_015182517.1|2956908_2959563_-|HEAT-repeat-domain-containing-protein
MVKHTQAKVLLTAILKVAILCLFLFLQVSGKALAQPVPYAPVAPLIEKLTDTDFRVRHDAADAIAKIGSPAVPFLINALKAENQQVRWRAASALADIGAEASTAVPTLLTTLHDQDEYIRRIAAYALGKIGPEASTAVPDLIEALHDSDRNLRLVAAYALGKIGSAASSATPALIVTLQDTNAEVRWNAAMALGRIGADANTVVPALIAALQDKTKHVRQGAADALGQFGAKAKTAVPALITTLKDENKYVRLNAASALGRIGLEAKPAIPALIAALQDDKVEVRRNAANGLGGIAGVFQDKAKKLSNTELDKDISDLEKALKIVEDPEAKFPEEYIAVVRRPLLALQAEKQTRLFDRTLEWILQHKWWLGAIAYILFVPLIWFILLRVRPLWLLQINNALKPYTDVPLPVIGISVPIRYALFVGFFHYHPKVLDGWVASHVKSVREEFQQKDTVRDRNVYIPVPVVLDGETVPQLTAQDLQPKFQKQRSCLLIWGEGGAGKTSLACQIAKWATSDDPAERLCEHQMLPVLIEEELDFEATDKPPFIAAIRGQLQDLTNEADPISEELLERLLRQRRILVIVDHLSEMSEATRKAIRPELPDFCVNALVITSRTEETLGKVTKTTLKPLRIEGNRLSSFMEAYLTQRGKRDRFTDTEFFDACSRLSTMVGTRNITVLLAKLYAEQLIARQDGTASATGTQSLAPLPDNIPDLMLSYLNELNRDVNADKLDDRMIQEDAKALAWECLKGTYRPAAAKRKDALALLNGDDAEARLKYLEDRLRLIQTIGPAQDQIRFALDPLAEYLAALQLIENYGKNQGQWRKFLNQAATMPGAPAAIQGFLLAVHDCCLRQGADVKVPDFVAQELRKQAGLASPSGQTQMAQQP
>NC_019738.1|WP_172642278.1|2955727_2956888_+|HAMP-domain-containing-histidine-kinase
MNDQFFGFIVFDNCTKAKVWSASAVDLLRAAAAALSLQHERFKAEVALRHSEAQLREQATQLEQALNKIKQTQTQLVQSEKMYSLGMMVAGIAHEINNPVGFVYGNITPASESIQDLLTLVNLYRQHYPNPVPVIQEYEETIDLDFIMDDLPKLLQSMKVGAERIRDIVASLRTFSRTDQSQMKRVNIHEGLDTTLQILQHRLKKKPGRPAIEVIKKYGRITSVECYSGQINQVFMNILANAIDALESMIISSEHIESETMVAHPSPQIQIYTELIDARESISNLPSVVIRIIDNGPGMTERVRLLLFDPFFTTKPIGQGTGLGLSISYQIIVAKHGGQIRCVSAPGQGTEFIIEIPIRQCHRKFSPSRQDSSEPQVLPAKNWQLC
>NC_019738.1|WP_015182515.1|2953278_2954313_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MQIFNNWNVVAKGWYIACPSHELLKGKVKSLEVCGQRIVIFRGEDGQVRAMDAYCPHLGTDLGIGQVDGNWIRCAFHHWAFDETGHCQNIPCQPEIPAKAKLQAYATEEKYGFIWIYPDASAPEKVADFDELKNKAIAIQYDRAFERSCHHHICMMNGIDAQHLKTIHHLDIKMELSLDRDESGTQMDFTMRGQFPQTTFRERLGQRFLGSTYEYSMRYAHGCIGLLTMMKNVRFFSPLQMIFAYTPITPGRTRIQPIYVTEKRRGIGGWLLSQFLLLCTRLAYYMLRDEDGEIYDNIRFNPKVLLGIDTPLVQYMDYVNKLEPSQWSLTKTDASVKHETFQRF
>NC_019738.1|WP_015182513.1|2952615_2953053_+|DUF962-domain-containing-protein
MSNLNPTLRQTLSNRINDQILEHPFTDYWDIFVLKHQHPINVALHIVGIIFFYSLLFWTWKLQNFWFLLGLPLTQLIGLTGHFLFEQSHIDRQDAVFSWRASCCLGRMLLRILLGKYGEDIRQRQEVLQQYQSKGDSTDICLENG
>NC_019738.1|WP_015182512.1|2950892_2952602_+|D-aminoacylase
MLDLLIQNGLIFDGLGSAPIRGDIGIQKGRIIAISPSLPNNAREVVDASGLWVTPGFIDIHTHYDLELEIAPGLSESVRHGVTSVVIGNCSLSVAVGKPQMLADIFQRVETLSHRLIEKWLKQSLSWHTPAEYLNHLQQLPLGPNVAPLFGHSALRAHVMGLERSLTVQPSKTELKTMQQIAADALDAGFFGISIDMFPWHRMSGEWRGCSIPSQHAKLGEYAMLANLCRQRDRVFQVTPNLQRLASFLDILRMGLGIGQRPLRLTVLSALDAVHDRKLWRIFSPLLFIWNRILRGNVRFQTLTEPFTIYSDGPVTPLFEEFSTGAQLNSCESRQERQKLWQSERFRRQFRQEWSNPWRKSFHRQLELMEIVRCPEVSWQGLSFAEIARQKQQDPVDFFIQALHHYDTDLGWVATGANDRLEPRLAMMQHPYILPGFTDAGAHVRNLGYYDGALSLLKQAVTTHFLSPETAIHRVTGEPAQWFRLDTGVLKIGAKADLVLLNPQALNQPISPQVEISDPVLDGELRRVKRGSDDIVQAVYINGIQAVHQGQVCEQLGREQLGTVLSPIL
>NC_019738.1|WP_015182511.1|2949954_2950872_+|hypothetical-protein
MNEEADNLLEKQKKYFTLIGLTVYESQCIEHKLKMLSKFMPLPYDKFHSTKEEFLSRETSLDKKTLGFVINELKKRSFTLNDDAEFLINKFVIERNTVVHHLVKLPGFNVNTEEGIDRGIKFLDEYRKTIQVINDIFDPILISVHIVLCENANTDDIKLYQEKLNELYLLLNDSLKRAGGSLEIEFHDNNNIDDRFDSLIKNHLNKNDSSALNPQKEKKKLWKKTKIIQALSRIAADIANQDGWIALSVCEQRLKTECPDIKPDDYGFNTILEIIKTCNLFEIKKSKHKKHKISVRFHQERNEIG
>NC_019738.1|WP_155898190.1|2948738_2949962_+|glycosyltransferase
MVLFVWGFVSLLHWQPQTQWLMVGLTAVLTIQTVRMLMAKANPPRVEGDADLPTVSILVPAKNESVVLPDVVHSLFHLNYPSTHLDIWIVDDGSTDETPQILRKLQTEFPGLQVHQRESKGGKSGALNAVFPFTQGDIVLVCDADAQLPANFLRQTVPLFQKRAIGAVQVRKAILNADTNFLTRCQQMEMSCDVFLQTHRIAIGGMTELRGNGMLVRRELLEKCNGWSEDTVTDDLDLCFKLYLTGTEIEFVIVPAIQEEGVTTWREFWHQHCRWAEGGYQRYLDYFPQILTLGWAKEIDLLLFFLLQFILPIGLIPDLLWTIFYSHHPVLFPLQTLLSIILTVAFIAGLYQYQKLRGGSLLWATIQGSFYMVHWIPVMIVTTLKLCIKPQKLNWIKTEHRGGMNYE
>NC_019738.1|WP_015182509.1|2948019_2948658_+|nuclear-transport-factor-2-family-protein
MREQRRLSRYKWSQRLGAILLVLAIWNVPQCALADVNQQEVNAIIRTREMALQALNTRNFSKIEPYLHPSFTITTVDNRVFHKVPEFEQYWNQQFSSSIKDIKMEAKVDTPRTFLSPETAISYGDALATFYFKDGNKPTMAMRWTAVLQKFQDRWTIQSLHFSSNLLDNPVLNGAQLASRVWAVAAGVGGILLGAVAMLLWRRKPKRTIERV
>NC_019738.1|WP_041780028.1|2947048_2947774_-|hypothetical-protein
MQARLVEVQQLLKSDRIAMYSLLNTHFQGVKPERFEADLEQKNWVILLEDRETKTLKGFSTLLVYETQFEGEVVSVVYSGDTIVDPSAWSSSLLPRAWIASIHFLRDKYPNGKLYWLLISSGYRTYRFLPIFWKEFYPCYDTPTPPRIQVLMQFLAHTRFDNYYDKQAGVVRFPHPQVLREKLCGIPQERLKDSHICFFQTQNPGYEQGDELVCLTEIKEENLTPAGRRMWFAKASLGVAS
>NC_019738.1|WP_041780029.1|2964688_2964946_+|hypothetical-protein
MNCQKAVNKPEQFICTIQPVTPTAAKPLDPSTFLQYVDALSTIIHGSTILVVALTQFSKVFVPLIGQKPDNKTNLPVQRTAKPKK
>NC_019738.1|WP_041780752.1|2965225_2965408_+|hypothetical-protein
MTKKQCLNPWAVARQLPSLKWLIIGRYRSRSDADGHLLLLRQRVPNIQFKVVFDVSDRKQ
>NC_019738.1|WP_015182523.1|2965585_2966320_+|Uma2-family-endonuclease
MVTQLQSSTPKDIIYPESDGQPMADNTKQFNWIVAIKLGLELLFTNDSNIFVAGNLLWYPLEGSNKTRCAPDVMVIFGRPKGDRGSYQQWREDNIPPQVVFEILSPGNTVKEMIEKYKFYQRYGVDEYYLYNPDGGELTGWLRSSNELEAIEEMMGWISPRLGIRFELSEGELIIYRPDGERFATYVELAQRLEQERQEKEQEQQRAEQAEARAEQTEALLEQERLKAQALEAKLRELGINPEQ
>NC_019738.1|WP_015182524.1|2966319_2967267_+|RluA-family-pseudouridine-synthase
MTEINLQVEEKDDRIDRYLSQHLRDLSRSRIQQLLEQGQVQVNDKLCTSKKVTVQSGDRISITIPEAKPLDLQPEAIPLDVLYEDDSLIIINKPAGLVVHPAAGHESGTLVNALLAHCTNLAGIGGVQRPGIVHRLDKDTTGAIAIAKTDQAHQHLQAQLKAKTAQREYLGVAHGSPSAESGTIDQPIGRHPVDRKKMTILPVDKGGRTAITHWQVRERLGNYTLIYFQLETGRTHQIRVHSAHIGHCLVGDSVYGSGRSVGVNLPGQALHAWRLRLQHPVSGEWIEAIAPLPPAFITLLDVLRRRTAALTPRHP
>NC_019738.1|WP_015182525.1|2967246_2967996_-|phycobilisome-rod-core-linker-polypeptide
MALPLLSYSPKSQNQRVAAYEIPGDEQPRIFTTDNLLSSGDMDNLIEAAYRQIFFHAFAWDREPALESQLRNGQSTVRDFIRGLLLSKTFRNSFYEKNSNYRFVEQCVQRVLGRDVYSEREKIAWSIVVATKGITGFVDQLLNSDEYLSNFGYNTVPYQRRRVLHSRNEGERPFNIKSPRYDAYYRSQLGFPQIIWQNEIRSYIPQERKARAGDPSLYAEMARSIAPQSNPVPRVSAQNIDYLSRVPRR
>NC_019738.1|WP_015182526.1|2968141_2968729_-|hypothetical-protein
MSWPSDSFSPPWVGESTISAIPFVRGYQYLTAVRQLALEPEMLDVTDDLRESERIYTWIGNHIDAINAELNTYLEACHGCFHPEQRRPMHILATPLATEYGIDGLCNIMVYPAVILIDVGRTARQDWLSIVVHEYAHAHLGSPGHDWQFFNIISHLCLGLGLAPPHWQPNMENYLRNWPHCASLANPLTFWMGYS
>NC_019738.1|WP_015182527.1|2968685_2969303_-|phycobiliprotein-lyase
MDGMEFFQLSAGKWRSQRTTHHLAFRRAETGESEINVATLAADHPQVVEICRLHQVEPSKAAGGALVSWQGTMAWDRSEEENHTGSTVMVIVPDQDNPRQGRLLRERGYAEIVPVAGRYLIDDEDALVLLTEYETMSSEERFCFVSSDVRMRTSTVKRFGGFSTASLCVETRIGSDLDDERRETLVPQQAQDVLAVRQFQSSLGW
>NC_019738.1|WP_155897986.1|2969444_2970728_-|hypothetical-protein
MPKKRRGAPNLHSKTPVKMGESLTPKGLHFLSTLAEKAGLSPSELCEAMAAGRIALYSDSAEIKLAIQAAANESAKGSELQGVTIEKQPKNQVAKPKDQSLSSEKDESQQKQSAEQAHIITDLQQQITQLQGQLESQVADQASVQSSYDSLQQQSQQQLAEKEQQIGQLQEQLQSRMSEQTQLQSSYDSLQQQSQQQLAEKEQQIGQLQEQLQSRMSEQTQLQSSYDSLQQQSQQQLAEKEQQIGQLQEQLQSRMSEQTQLQSSYDSLQQQSQQQLAEKEQQIGQLQEQLQSRMSEQTQLQSSYDSLQQQSQQQLAEKEQQIGQLQEQLQSRMSEQTQLQSSYDSLQQQSQQQLAEKEQQIGQLQGRLESQVVLQTSQNSTYESLKQQSQEQATELATLRQQIAQLRSLAAVGETRLNKWQSRNASR
>NC_019738.1|WP_015182529.1|2971302_2971527_+|hypothetical-protein
MFETCFVTPGLLSLFNPRVASQWQAQILIITGAGLADLVNVELAWSIALVQLDWKRDFLQPKQQVSLKNQEFRT
>NC_019738.1|WP_015182530.1|2972530_2973049_+|phycocyanin-subunit-beta
MFDAFTKVVSQADTRGEYLNSGQLDALISMVKEGNKRIDTVNRITGNASSIVANAARSLFAEQPQLIAPGGNAYTNRRMAACLRDMEIILRYVTYAMFAGDASVLDDRCLNGLRETYLALGVPGASVAAGVQKMKEAAIGIANDRSGITQGDCSALMSELASYFDRAAAAVS

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Crispr_ID: NC_019738_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_12

3131505-3132053

Orphan

I-D,II-B

Consensus_repeat	Method
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	PILER-CR
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	CRISPRCasFinder
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	CRT

7 spacers

The CRISPR arrays of NC_019738_12

>merge|NC_019738|12|3131505-3132053|PILER-CR,CRISPRCasFinder,CRT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTTGCTCTATAAGCAGGTGCCTCGCGCCGATGTTGAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTTTACTGGTTTAAGTAGTTCATCAGAGGCAAATTGTTAGGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTAAAGACTGTAAGGGATATTGAGTAATTATACTCAGCTAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACATAATGTTATCTCTGACTTATCAAGCTTGTATTTGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACACATTGAATAGGAAGAGAAAAACAAAGACGGATTCAGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACTTTTAAGTACGTAAGGTGCATTCATTTTTACTTCACGTTTAAATTCCACTTAATCCCTATCAGGGATTGAAACAAGCTTACACCTAAACAACAAACTAATCTCTTCGGTTTAAATTCCACTTAATCCCTATCTCGGCTCCGGTT

>NC_019738|12|4|3131505-3131982|PILER-CR
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTGCTCTATAAGCAGGTGCCTCGCGCCGATGTTGA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTTACTGGTTTAAGTAGTTCATCAGAGGCAAATTGTTAG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TAAAGACTGTAAGGGATATTGAGTAATTATACTCAGCTA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATAATGTTATCTCTGACTTATCAAGCTTGTATTT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ACATTGAATAGGAAGAGAAAAACAAAGACGGATTCA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTTTAAGTACGTAAGGTGCATTCATTTTTACTTCAC
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC

>NC_019738|12|11|3131505-3132053|CRISPRCasFinder
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTGCTCTATAAGCAGGTGCCTCGCGCCGATGTTGA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTTACTGGTTTAAGTAGTTCATCAGAGGCAAATTGTTAG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TAAAGACTGTAAGGGATATTGAGTAATTATACTCAGCTA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATAATGTTATCTCTGACTTATCAAGCTTGTATTT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ACATTGAATAGGAAGAGAAAAACAAAGACGGATTCA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTTTAAGTACGTAAGGTGCATTCATTTTTACTTCAC
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	AAGCTTACACCTAAACAACAAACTAATCTCTTCG
GTTTAAATTCCACTTAATCCCTATCTCGGCTCCGGTT

>NC_019738|12|3|3131505-3132053|CRT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTGCTCTATAAGCAGGTGCCTCGCGCCGATGTTGA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTTACTGGTTTAAGTAGTTCATCAGAGGCAAATTGTTAG
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TAAAGACTGTAAGGGATATTGAGTAATTATACTCAGCTA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ATAATGTTATCTCTGACTTATCAAGCTTGTATTT
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	ACATTGAATAGGAAGAGAAAAACAAAGACGGATTCA
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	TTTTAAGTACGTAAGGTGCATTCATTTTTACTTCAC
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	AAGCTTACACCTAAACAACAAACTAATCTCTTCG
GTTTAAATTCCACTTAATCCCTATCTCGGCTCCGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015182646.1\|3123644_3123992_-\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|378240
NC_019738.1\|WP_015182645.1\|3121598_3122759_-\|response-regulator	unknown	unknown	gnl\|CDD\|381116
NC_019738.1\|WP_015182653.1\|3132545_3133268_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240048
NC_019738.1\|WP_015182658.1\|3137033_3138110_-\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NC_019738.1\|WP_015182642.1\|3116256_3118596_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_019738.1\|WP_015182654.1\|3133294_3134530_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182661.1\|3139231_3139543_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182641.1\|3115185_3116256_-\|response-regulator	unknown	unknown	gnl\|CDD\|237135
NC_019738.1\|WP_015182643.1\|3118631_3120152_-\|CHASE3-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_019738.1\|WP_155897992.1\|3134554_3134830_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182648.1\|3125919_3127941_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320697
NC_019738.1\|WP_015182655.1\|3134962_3135436_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182659.1\|3138203_3138416_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177653
NC_019738.1\|WP_015182660.1\|3138649_3139225_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NC_019738.1\|WP_015182647.1\|3124178_3125807_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_019738.1\|WP_015182656.1\|3135458_3135620_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182657.1\|3136003_3137050_-\|DUF1611-domain-containing-protein	unknown	unknown	gnl\|CDD\|225902
NC_019738.1\|WP_015182650.1\|3129934_3131239_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_019738.1\|WP_063822982.1\|3128703_3129573_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|319862
NC_019738.1\|WP_015182644.1\|3120259_3121453_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015182646.1\|3123644_3123992_-\|DUF4870-domain-containing-protein	gnl\|CDD\|378240	pfam09685, DUF4870, Domain of unknown function (DUF4870).	9.38805e-21
NC_019738.1\|WP_015182645.1\|3121598_3122759_-\|response-regulator	gnl\|CDD\|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.11858e-27
NC_019738.1\|WP_015182653.1\|3132545_3133268_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240048	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	9.53443e-35
NC_019738.1\|WP_015182642.1\|3116256_3118596_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	7.10254e-141
NC_019738.1\|WP_015182659.1\|3138203_3138416_+\|hypothetical-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	5.02454e-05
NC_019738.1\|WP_015182641.1\|3115185_3116256_-\|response-regulator	gnl\|CDD\|237135	PRK12555, PRK12555, chemotaxis-specific protein-glutamate methyltransferase CheB.	1.49216e-92
NC_019738.1\|WP_015182643.1\|3118631_3120152_-\|CHASE3-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.13287e-50
NC_019738.1\|WP_015182648.1\|3125919_3127941_-\|M48-family-metalloprotease	gnl\|CDD\|320697	cd07338, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	1.10799e-65
NC_019738.1\|WP_015182658.1\|3137033_3138110_-\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	4.17227e-112
NC_019738.1\|WP_015182660.1\|3138649_3139225_+\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.32906e-45
NC_019738.1\|WP_015182647.1\|3124178_3125807_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_019738.1\|WP_015182657.1\|3136003_3137050_-\|DUF1611-domain-containing-protein	gnl\|CDD\|225902	COG3367, COG3367, Uncharacterized conserved protein [Function unknown].	3.78892e-107
NC_019738.1\|WP_015182650.1\|3129934_3131239_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_019738.1\|WP_063822982.1\|3128703_3129573_+\|GUN4-domain-containing-protein	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	7.68338e-65
NC_019738.1\|WP_015182644.1\|3120259_3121453_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	4.75543e-30

>NC_019738.1|WP_015182650.1|3129934_3131239_+|glutamate-5-semialdehyde-dehydrogenase
MTASPVASLPLTAIAKATRQAARQLAVLPTEARNQAVEAIAQALEAATPEILAANAADCQAAQAEGIAKPLYNRLKLDETKLKAAIEGVRDVGKLADPVGTVQIQRELDEGLILKRITCPVGVLGIIFEARPDALIQITSLAIKSGNGVILKGGKEAIRSCETLVKAIHQGLSTTAVDAAAVQLLTTREEIRALLQLDEYVDLIIPRGSNEFVRYVQENTRIPVLGHADGICHLYIDRAAELQKAVEITVDAKTQYPAVCNAIETLLVHSAIAPTFLPLAAAALQKRNVELRGDEVTCQILEMAAATEEDWSTEYNDLVLSIKVVDSLEEAIAHINTYGSRHTDAIVTEDPNIADTFLNQVDSANVFHNCSTRFADGFRYGFGAEVGISTQKMPPRGPVGLEGLITYKYKVTGNGHIVAPYAGKDAKPFTHRDF
>NC_019738.1|WP_063822982.1|3128703_3129573_+|GUN4-domain-containing-protein
MTNHLNQPRPGNFLLREQSSSTEMSCLMGLEELKSHLSSKSKETRIAVLSEALKCGQPGKNWIFQILKHETGPVQWGAYDVLWDSANESTRQKLLPYWPLHSEVGVDYTRLRDLLAAGQWKEAEGETKKVMLKAAGREKEGLLDREASENFPIVDLRTIDQLWVKFSKGRFGFSVQKQILQRLVGEENVNPETSERRRVAEDFKVHINEFGEQVGWRMAGNWLNFRDLMFDTCAPEGHLPSPSFATPCNGNEGEEQQPWGRWCVSFCFGGIKCGVLFLGWWSLLSRLDS
>NC_019738.1|WP_015182648.1|3125919_3127941_-|M48-family-metalloprotease
MSLQAGLDALNEGRYRDAVQILQDFCQYYTQRGSKGYIQAQVGLVKAYHRLGDTEQAIALAKDLSTNENPQVSSWAMNALNSLSSTQTAESAPSPSPIPQPSHAIQKASRATQVGVKLTMASVAGNLALASGVTVSLLIGMVLVLSLALVFILDSHDPTTGLAIALGITVIFNIAGFFLSPFLMDLTQRWLYNTRWVSLDEVARQSPEAARVIGRVCQQKKLKTPRLGIIDDQNPTAFTYGALPNSARLVVSQGLFTYLDDDEIATVYAHELGHIVHWDFAVMTLASTLVQITYLIYNFARRFGRGGNDKLKDAAGTAALVAYPFYIIGTYLVLYLSRTREYFADHFAAETTGNPNALSRALVKIAYGILEEGKHSSEPSRLIEGTRALGIYDHKAAASTGTAYRVAAKPYQLGRVFLWDLFNPWGWWMELNSTHPLTGKRVRALSTYAEQLGLPTEFDMGRVVGEGKSLSKKKLYGSFVLDLVIFSAMPIGLFVGLAVGIVLTGTIPMALVALPILGLGLGTLIRTFVMFPNFKEAPESDVLKLMSDPYASPLRGKPVKLQGELMGRGDAGYEFGSDLKLQDRTGLIFLHYASRFGPLGNFWFGMKRVKNLLGAQVGVTGWFRRGVGPWVDLTQFTTESGTVVNSFHRLWSFIFGGAAMLLGVVLLVIGLPG
>NC_019738.1|WP_015182647.1|3124178_3125807_+|peptide-chain-release-factor-3
MSTELQTELQAAVERRRNFAIISHPDAGKTTLTEKLLLYGGAIHEAGAVKARRSQRKATSDWMEMEQQRGISITSTVLQFEYQGCQINLLDTPGHQDFSEDTYRTLAAADNAVMLIDAAKGLEPQTRKLFEVCRLRRLPIFTFVNKLDRPGREPLELLDEIEQELGLQTYAVNWPIGMGDRFKGVFDRCHQQIHLFERSAHGSREAKDTVINLGDPRIEALLEQDLYYQLKEELELIEGIGPELDLEQVHQGQMTPVFFGSAMTNFGVQLFLDSFLDYALKPYARNSSEGTIPLEYPEFTGFVFKLQANMDSKHRDRVAFVRVCTGKFEKDMTVNHARTGKIVRLSRPQKLFAQDRESIDVAYPGDVIGLNNPGVFAIGDTIYNGKKLEYEGIPCFSPELFAYLRNPNPSKFKQFHKGVTELREEGAVQIMYSVDEAKRDPILAAVGQLQFEVVQFRMQNEYGVETRLEALPYSVARWVTGGWDALDKVGRLFNTVIVKDNWGRPVLLFKNEWNLNQVMEDHPELKLSAIAPVVSGHEPVSL
>NC_019738.1|WP_015182646.1|3123644_3123992_-|DUF4870-domain-containing-protein
MEFDPDKRKLLSALCHGSIFFSSVVVSVAIPIAILFVSEDPVVKDNAKEAINFHLNVWVYEAIIGVLAFLTLGLLGFILGPIFFLFHWVPPIFAIIQALGNPIQAYRYPFIFHVI
>NC_019738.1|WP_015182645.1|3121598_3122759_-|response-regulator
MLNASSYQAGQLVNFLKNLKDEYVSGTVYIKTIVNPDQKPRTRVFVVNNGEIIYGGLKIPHNNQEFARMIGIKLNHSFADTAIKYTMQKLRNPSSFQELLERIVRIRVFKWEEIEAIVHTQVVQVLEQALPHPGQLKLETTVPFDLSYGEDNRGLDWAKLMHDVTTRQQEWATLTPIIPSMDAVPKLIPISWQAITDSKVQQHLRQWVNGVRSLIDIAEQLEEDPLQLARSYMAWAISGWVSLRNEIPETQVISATQKQRPIVLSVDDSLVVQTMIKRALDDNYQVLLVSNAVDALKVINTNPIALLLLDVTMPGIDGLEFCRTVRSIPKFKHLPIIMLTARDKFSDKLRGQMVGATHYLTKPIEPKQLLQTVAKCVDPKALSLQP
>NC_019738.1|WP_015182644.1|3120259_3121453_-|chemotaxis-protein-CheW
MENKQYLTFRWHEQQYAIEAPLVQELFPLPEITLIPKAPIELIGMLNLRGQLLPMMHLDLIQGNSLKGCKFSDYVITVQWEGLHFGLVVHQVLEVLELNPENITTEIQDELLSNINPVFISGFAQVENEQILLLNIKTLMSESDDLLALIWDAQTQLDIIATSPTNALEDSAQIVPNQDKSHEQKQSVNKEEFNELLQPPKEIQEIQNHNAIPSFYDLYFPNATPEERNIFRQRADHLKSPLENVQVINDIIPLAVIGFGNEYFGLDLELVREFIDITNLTPIPGCPSHIVGNMNLRGEIVTLVDIRKVLNLPLAPIKIDSQAVVVQVNDIVAGLPVDQVLEMVYLNSDDMTLPPNISCDLGESYIRGAAVLEEKNLKILDMVKLFTQGELVVNEEA
>NC_019738.1|WP_015182643.1|3118631_3120152_-|CHASE3-domain-containing-protein
MLQAIQIPQKQEIVQAEHKKKRRLTVSQIVPIGFGIVLALAGISTILTQIAKSNSADTQQTVNQGYQVKELLRQVEKDLVDAETGQRGYLITGVLNYLEPYDSGRKNSQENIAELKKLIIDPAQRTRVEKIEPLIQQKFTELEETINLKKAGKEKEAVSYVLTNKGKQVQDELRAKLVEMADAQDKLVAERQKATDQLQQLSSIVGWGGLILEISAGLFVSYYVANYVVSLIIKPITNAAQEVASSSAGIADTVEKQERTVLDQTASVNETTGTIEELGMFTLQSAEQAENAATGARQALILAEGGTQTVGRTIEGISGLRDQVTAIANQIIRLSEQTAQISTVSDLVADLANQTNMLALNAGVEAARAGEQGKGFAVVAGEIRKLADQSKKSANRINSLVNEVQAAINSTVMVTDEGTKKATVGIELAEDTGDVFASIADSVNQVFLNTQQIAQSAKQQAVSVQQVVASMNVINLGAKETAAGIIQVKDATHNLNKAAENLEAVV
>NC_019738.1|WP_015182642.1|3116256_3118596_-|hybrid-sensor-histidine-kinase/response-regulator
MMIDDEELRNLYKVASADHIQKIETGLLHLEKNPQDGTQLEQLLREMHSLKGDSRMLGVTDVETLTHQMEDILGGVKRSERVLTPPVFECLYQGLDAVRQIATEAVTGQAAGVSVFHVLALLMGAASEDASEDALTLMAETVGEVQGEASSQPHERPVVFNDSVQTQEPILPAADTLAQVSDYQIDTIRVAAQKLDKLLTQASELAVTKGQISDRLSDIDQLMTLWEEWNREAFVSRLTYDELERRLQTPELQPLQNFYNLVEARLEQLGTLLNRLRNITFEDNAKLETVASELESGIHALRLLPFSTIFNLFPRTVRDLAKQQGKDVNLVLEGGDISVDKRILEEMKDPLLHLLRNAIDHGIETPQERQSLGKPAIATIRLRGYQVGSTVSIEIIDDGRGLDVPAIKQAAMSRGIRSPQELAAMSTAEVQALIFAPGFSTRTAVTEISGRGVGLDVVRANVERLKGSIQVEFTPGRGCLFRIMLNSSLATTDALIVQVSEHPYAIPVGYVEAMQLVSPQEIFAHASEAVATLEVSGCQTLPFQGESVSVVWLADLLGLPVKAPASTKALRAATKTIPCIILRIGSERLAVLVDTILEQQDIVLKPQSQLLKRIRNISGATILGTGDVCMVLHPPDLFKSAKKAIVSVTVKELTEQAQVKQKILLVEDSIPIRTQMKRILESAGYDVTAAVDGEDGFKKLKTGMFKAVVSDVQMPHLDGLGLTTRIRQFREYQDLPVILVTTLASEEDKHQGKQAGANAYITKGDFEQGILLDTLRRLI
>NC_019738.1|WP_015182641.1|3115185_3116256_-|response-regulator
MATNKVVLIEDSPVALEILQRLLNSSPDVDVVGVARDGAEGLEVITKTKPDVICTDFMMENMDGLELTKRVMADDPRPILVISNFVQKTDVDNVFRLLQAGAADVFPKPTTDSPTDYERLKSSLVAKIKVLSSMKVTARRSQQPLSGSVKPITSGAFSGTQPLMRNVSSRVKVIAIGASTGGLQSIQKILGQLPSNFPLPIICTVHVSTGVLSGLVNWLSSECPLKVKIAEVGETPAPGTVYFAPEKCDLEVDFRGKFIYSNCPVENKHCPSINVAFKSLAQFYGKAMAGVLLTGLGRDGAEGLQAIVQAGGITVAQDEKGGGAFGMVKEAITMEAVQQVLTIEKIAPFLLKTLSE
>NC_019738.1|WP_015182653.1|3132545_3133268_-|NUDIX-domain-containing-protein
MNQIILRAAIDNGVTMISEKMLQFQPDAEEVFDILDPVTGYPTGQTKARSLVHAEGDWHGAFHLWLVSHSKEPMMYLQRRKEDKDVAPGYLDVPVGGHYRSGEKMADGVREVEEEIGLTVKLEDLTPLGKRLVVYREQGVKNNELIDVFLYETDLTIEAFKLQPEELAGFYEIPVREMLKLFTLEGYSYEAQGVELLNRLPQAHQMNVTKKSFVPSIDAYPYKVAIQVERYFEGKQYLSI
>NC_019738.1|WP_015182654.1|3133294_3134530_-|hypothetical-protein
MNTTTSNSLPQSSVTTDNAPDNITNQDTMALIELLKEELTRQLGSLPSNAVTVIQRIVTEVERICDKSDRIQQGGDIRSWQLTLARHRLSKCVEYYKLGSKQGRVELHSNLSVMIYRQVAPAQAQLSFAARRLLIEDFLQDFYADSLKAFRRENQVADNYTPRTKIELAEYMAFTEQYAKRRVMTGYGAVQLLVLRAKSFAKRQPTDTVMDIEQVTEFAKGEEAQMQSRSPMIQQVRERLVAETKDPHDAVLRDRVVGELVQYLESQGHKDCADYLILKLQDFAAPEIDNIMGLTPRQRDYLQQRFKYHVEKFARTSQWQLVHQWLGADLDQKLGLSSKQWDAFVGQLDPMQQQLLELKRAKMSDFEIVKALKITPKQVQKRWTQVLEMASLVRNNGVETVQEGNNQSVAA
>NC_019738.1|WP_155897992.1|3134554_3134830_-|hypothetical-protein
MIQPVDGLSTPIASIQDGDSSPEKWLKSWHSEQLRAADPANQPLRQFALHQPYWGACTRRAQTLSEALYSRIVDEKKRGEPNTNLLKSSPL
>NC_019738.1|WP_015182655.1|3134962_3135436_+|hypothetical-protein
MTAAVKIQPIGFSVQYPKTQWRVNFVEDASGKYRFSLSGRDFKFEPRDRYYYPSHDDAKRAAYCFLELMKRLERSRMRLSVLAEIGLLKFPEELYRTYELWVVIDRTRYTWELTTANGFCVRSQRWYKHPDTALAKAKAHIDRELAVSQIRGVVGWV
>NC_019738.1|WP_015182656.1|3135458_3135620_-|hypothetical-protein
MNRWIDIVIFMLVIAFPVVMTWLLVTDRLELWFYLSLHGTILCALEIVKKLEH
>NC_019738.1|WP_015182657.1|3136003_3137050_-|DUF1611-domain-containing-protein
MRLTPNHRVAILLHEGIRGSHGKTGLTFLRYGETPIVAVIDSQCAGESLSQLTGISCDAPIVDSVTSALVYQPDVLLIGIAPSGGALPDVWWQEVKQAVAAGLSVVNGLHTQMDSDAELRGLLRPHQWIWDIRREPEGLAVGSGKARSLSCQRLLTVGTDMSVGKMSASLELHRAARFQGIRSKFLATGQAGVMIAGEGIPLDAIRVDFAAGAVEQLVMRAGDDYDLLIVEGQGSLLHPGSTATLPLMRGTQPTGLVLVHRAGQAHIRNHEHVPIPPLPEVIGLYETVARAGGAFAAVRVVAIALNTGHLDGEAAQRAIAQVQEETGLPCTDAVRFGGDSLVDAVIAE
>NC_019738.1|WP_015182658.1|3137033_3138110_-|dipeptide-epimerase
MHFVLETFTVHKRFPLTISRGTTSQTTNIWLRVEQQGIEGWGEASPFSIRGDDKAGISGVRQSAEELWEALQMVASRLETFSPWERQKIEQVLRETEVPSAACAAIDLALHDWMGKLTGVPLWRQWGLNRRRIVPISVTVGINSPEGARQRVRDWLPLTGGGVLKIKLGSPAGIEADREMLLAVRDEAPQAQLLVDANGGWSLEAAIQMCDWLASQGVKYVEQPLAAGEENQLPILYERSPLPIFVDESCFTSHDIPKLADRVHGINIKLMKSGGLTEAMRMVHTARACGLQVMFGCYSDSTLANTAASHLAPLADYLDLDSHLNLVDDPFTGATVQDGRLIPNDLPGLGVQYRASNP
>NC_019738.1|WP_015182659.1|3138203_3138416_+|hypothetical-protein
MTRSGAIVDEQGKLNNFAIEPKMYVDENPRTGFTSYAEVLNGRLAMIGFISLLALEAISGQGLIGLLTTL
>NC_019738.1|WP_015182660.1|3138649_3139225_+|NUDIX-hydrolase
MTSIQPWKILNSQLVLNNPWCKVRRDEVELPSGQVIDDFFVNVRPDIVLILAVTQQQEIVFVRQYRHGVQDILLELPGGGFHPQRETSLSAAHRELEEETGYVAEQMRLLATLYDNPVKDTNKIHLFLAENAHPSSIQQLDVTEEVEIVLVPIKEVLGKISTGEICVCGTVTALFLGLNVLASSSFPGNSP
>NC_019738.1|WP_015182661.1|3139231_3139543_-|hypothetical-protein
MLDTILIFVLGLTPPILSLWMMRRAKERMEARLLAVRQQSFVRVPPRNHLPPDQYYLDGVGYLIGDITCQFNARSAYIRCAINPSGPCEQCCHYQPKEEILEN

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Crispr_ID: NC_019738_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_13

3304124-3304229

Orphan

Consensus_repeat	Method
TCAACCCTCCCTTAATAGAGTGGGTTGAAAGA	CRISPRCasFinder

1 spacers

csx1

The CRISPR arrays of NC_019738_13

>merge|NC_019738|13|3304124-3304229|CRISPRCasFinder
TCAACCCTCCCTTAATAGAGTGGGTTGAAAGATCGCGACTTCTACAAGGTGTTTCGTCGTTCCGTCAAGTTTTGTCAACCCTCCCTTAATAGGGTGGGTTGAAAGA

>NC_019738|13|12|3304124-3304229|CRISPRCasFinder
TCAACCCTCCCTTAATAGAGTGGGTTGAAAGA	TCGCGACTTCTACAAGGTGTTTCGTCGTTCCGTCAAGTTTTG
TCAACCCTCCCTTAATAGGGTGGGTTGAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015182785.1\|3306924_3307506_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041780054.1\|3307607_3308219_+\|chorismate-lyase	unknown	unknown	gnl\|CDD\|366866
NC_019738.1\|WP_015182780.1\|3300807_3300945_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182787.1\|3308423_3309935_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235998
NC_019738.1\|WP_015182784.1\|3306350_3306914_+\|metal-binding-protein	unknown	unknown	gnl\|CDD\|370771
NC_019738.1\|WP_015182782.1\|3302696_3303137_-\|hypothetical-protein	csx1	mkCas0112_csx1_CAS-III	unknown
NC_019738.1\|WP_015182774.1\|3292471_3294583_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019738.1\|WP_015182793.1\|3316177_3316549_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NC_019738.1\|WP_015182778.1\|3297766_3298447_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NC_019738.1\|WP_015182790.1\|3313830_3314292_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041780810.1\|3294742_3295519_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_019738.1\|WP_015182789.1\|3312609_3313683_-\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|183150
NC_019738.1\|WP_015182791.1\|3314350_3315376_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|365904
NC_019738.1\|WP_015182788.1\|3310118_3312470_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_019738.1\|WP_015182779.1\|3298465_3300505_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019738.1\|WP_015182792.1\|3315400_3316060_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182776.1\|3295610_3296240_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376437
NC_019738.1\|WP_015182783.1\|3303231_3304047_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376025
NC_019738.1\|WP_015182781.1\|3301489_3302521_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|235072
NC_019738.1\|WP_015182777.1\|3296469_3297711_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_041780054.1\|3307607_3308219_+\|chorismate-lyase	gnl\|CDD\|366866	pfam01947, DUF98, Protein of unknown function (DUF98). This is a family of uncharacterized proteins.	1.91653e-85
NC_019738.1\|WP_015182787.1\|3308423_3309935_-\|amidophosphoribosyltransferase	gnl\|CDD\|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NC_019738.1\|WP_015182777.1\|3296469_3297711_-\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NC_019738.1\|WP_015182774.1\|3292471_3294583_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.79571e-08
NC_019738.1\|WP_015182793.1\|3316177_3316549_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	1.88622e-55
NC_019738.1\|WP_015182778.1\|3297766_3298447_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	9.17534e-87
NC_019738.1\|WP_041780810.1\|3294742_3295519_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.31598e-11
NC_019738.1\|WP_015182789.1\|3312609_3313683_-\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|183150	PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NC_019738.1\|WP_015182791.1\|3314350_3315376_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|365904	pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase.	7.99538e-72
NC_019738.1\|WP_015182788.1\|3310118_3312470_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_019738.1\|WP_015182779.1\|3298465_3300505_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.5566e-65
NC_019738.1\|WP_015182776.1\|3295610_3296240_-\|hypothetical-protein	gnl\|CDD\|376437	pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1. Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localized to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localize predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. The budding yeast member of this family has been found unexpectedly to encode a BH3 domain-containing protein (Ybh3p) that regulates the mitochondrial pathway of apoptosis in a phylogenetically conserved manner. Examination of the crystal structure of a bacterial member of this family shows that these proteins mediate a calcium leak across the membrane that is pH-dependent. Calcium homoeostasis balances passive calcium leak with active calcium uptake. The structure exists in a pore-closed and pore-open conformation, at pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline transition; together these findings suggest that pH controls the conformational transition.	0.0083505
NC_019738.1\|WP_015182783.1\|3303231_3304047_+\|hypothetical-protein	gnl\|CDD\|376025	pfam18599, LCIB_C_CA, Limiting CO2-inducible proteins B/C beta carbonyic anhydrases. Limiting CO2-inducible B protein (LCIB)-LCIC complex plays an important role in the microalgal CO2-concentrating mechanisms (CCMs).LCIB and homologs (LCIB1-4 and LCIC) structurally resemble beta carbonyic anhydrases (b-CAs) with striking similarities in overall fold, zinc-binding motif, and especially putative active site architecture.	1.48568e-95
NC_019738.1\|WP_015182781.1\|3301489_3302521_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|235072	PRK02812, PRK02812, ribose-phosphate pyrophosphokinase; Provisional.	0
NC_019738.1\|WP_015182784.1\|3306350_3306914_+\|metal-binding-protein	gnl\|CDD\|370771	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227). Members of this family of hypothetical bacterial proteins possess metal binding properties; however, their exact function has not, as yet, been determined.	5.94554e-72

>NC_019738.1|WP_015182783.1|3303231_3304047_+|hypothetical-protein
MTQGSVNQLGETIPQLLNGYDPNVFPAFHQTLSTHFPGALPMTKYMRKTFQSLSAYGFCDENTMGMIAICRDEIAEPLFTEVIRYWGKTFNCCSLAGFVMMGKTGLAAATDHTPIVDGIRRFAFYAMPHIAISRHGDMGKVYRDGLQKASHACGALETVVQELASGHLKLEMDMQDIEQTIIRQKILSTLTYGDKPDLIEITKLASRIISDDVKNLLNILDSSVFNYAVMTGIQIHGPLGSHWIYPQDFYVVGSDLPEGKAEIEAFQSGRK
>NC_019738.1|WP_015182782.1|3302696_3303137_-|hypothetical-protein
MRAEQPPVGEAMLLEAASVLAKLHMNCAIAKAWRDWCRRELRQVAKNNTNTQWWKEEKLEGIGPLSLQGVPEEIKAGLRRCKQKLMEANWRSRQLGCGERRVALVCCYNWTKSLKSELEVELEKAVRENQTQIQKQLPPSDQKQGR
>NC_019738.1|WP_015182781.1|3301489_3302521_+|ribose-phosphate-pyrophosphokinase
MIRLQSNELRGFAVSRSATLTLQPMLPPIADNNRLRLFSGSANIPLAQEVARYLGMDLGPMVRKQFADGELYIQIQESIRGCDVYLIQPTCQPVNAHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITEAGASRVLAMDLHSAQIQGYFDIPFDHVYGSPVLLDYLASKRLSDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVMNVIGDVEGKTAVLVDDMIDTAGTICEGARILREEGARQVYACATHAVFSPPAIERLSSGIFEEIIVTNTIPVSEEKRFAQLTVLSVANLLGETIWRIHEDSSVSSMFR
>NC_019738.1|WP_015182780.1|3300807_3300945_+|hypothetical-protein
MDDHSQKAGIVSKRLAFAAKKLNLEQRLPERSMLLAGQQLPKREM
>NC_019738.1|WP_015182779.1|3298465_3300505_-|serine/threonine-protein-kinase
MEPPIPSGTILQNRYHLLSVLGQGGFGRTYLAEDQGRFNERCALKELIPPETGAYELEKSKELFQREAESLYKINHPQVPQFRANFEQDGRLFLVQDYVEGKTYRELLNDRKAQTYIQSTNPSGGSPEPSTGVFSEAEIRQLLIQLVPVLDHVHSKGIIHRDITPDNIIRRNSDGLPVLIDFGVVKELATRIFTSVASAPITTVGKVGYAPSEQIQTGRAYPSSDLYSLAATAVVLLTGKEPQALFDDNQLTWSWRRWANVSDELASVLNRMLSYRPGDRYQSATEVMQALQSPTPQSPVSPPPPQRPDPNLSQVATMAVGRPPAGGAGARTPQRGNPSIPDPNRNTIWDNPMAVLGIGITLALLAGLGSWALFSSLRNQGDPQATLTPTEPIGDELPTPLVIETLPPTPIETLSPIPTTTLSPIPATPLSPVPTTPTPTSFSRNLNVPVGKTITTEGALNANTTVNYIIKGEQDQRLTARIPEEGVLMTILGPNGKPVGNRATRVKDWEGTLPFTGNYTIQLRPVQGVADRDYTLALTLAPSPSASPSPSPSPSPSAKYDSETVKVPAGKSVDVSGKTSPQLIKRYVVTVPQGQALTVKPVEADVRINVQYPDGTVQQNAAGINFVRPGQYRVDVIAGNEASFKLNLSLQNVAPTPTPTPTPSPTPTPTPTPTPTTTP
>NC_019738.1|WP_015182778.1|3297766_3298447_-|ATP-dependent-dethiobiotin-synthetase-BioD
MNALLITGTDTGAGKTVLTCALVAYWQTYRPQESLGVFKPIQTGEGDCELYQQLFNLNQSPEEMTPLRFQTPVAPPVAAEREGRTVDLGLVWQAFSRLQQQRQWVLVEALGGLGSPITHELTVADLARDWRLPVVLVVSVKLGAIAQAVANVALARSCGVQLQGIVLNCVQPCSQEDIANWTPIDLIKSLTNVPVLGILPYLTDPTDLSKLAQVASSLDLELLMPS
>NC_019738.1|WP_015182777.1|3296469_3297711_-|amidohydrolase
MVSTFPHPHSVDFSQIRLAIRSLQPQLVEWRRHLHQRPELGFKEQLTAAFISQKLQEWGFEQTLNSSVPLRYQTGIAKTGIVATISSNRPGPVLGIRADMDALPIQEANDVPYRSQHDGIMHACGHDGHTAIALGTAYYLAHHREDFTGTVKIIFQPAEEGPGGAKPMIEEGVLKNPDVQAMIGLHLWNNLPLGTVGVRSGALMAAVEGFDCTIFGKGGHGAMPHQTVDSIVVSAQIVNALQTIVARNVDPIDSAVVTVGTLHSGTARNVIADTAKMSGTVRYFNPKLEGYFSQRIEQVIAGICQSQGALYEFNYVQLYPPVINDVQMAELVRSVASDVVETPAGVVPECQTMGGEDMSFFLKEVPGCYFFLGSANPSRDLAYPHHHPRFDFDETALLMGTEIFVRCVEKFCR
>NC_019738.1|WP_015182776.1|3295610_3296240_-|hypothetical-protein
MTYTNRPGDNLITEPPVVNQVVEYHDRVRWGPIISGLVVALATQLILSALGAAIGASFLSGSGAPRSNAPGVGTGVGIWSIISLLIALFIGSWVAARASGPMNRNTALLNGAILWATTLALGSWLLASGVTGAFGIAASNAGEVVNQVQQGGVNLPDNPPNVTAQQTRNIAGDAAKGLWSFVIGSLLGLAASMGGASVGTRSPRVYRER
>NC_019738.1|WP_041780810.1|3294742_3295519_-|Uma2-family-endonuclease
MYQTDPPLDPKKVLPTMYDLPSEDPEEPGLPDEYHLLQPQLLGYTFCPANYPEGEIFVASDLNLYYNVRHPLWYKRPDWFAVLGVSRLYEQRELRLSYVVWQEGVNPFVVVELLSPGTEKEDLGQALREVNQPPTKWEVYERILRVPFYIVFDRYSDQLRAFQLVGSSYSELELSEPRVWMNDIQLGLGLWQGVYQGIDRVWLRWYDAAGNWILTPEERERQRAEQESQQLERERRRVERLTEQLRSLGVEPDLDDEV
>NC_019738.1|WP_015182774.1|3292471_3294583_+|helix-turn-helix-transcriptional-regulator
MNISIYDVSGDIGKTLAELRKAAKKKQADIAESLNVAQSHVSRIEKGKLIPTNEEIEGYLSAIDTDEARDYLAFLKPWEILKRPSFRNPQRDELWKAETSLRELNQLISNDAPDLLKAQAQMYDKRVREEAEYLTSLKHSIAYVGSVGVGKTTAVCKLTGLIMPQEKNFLRQSILAVGSGRTTVCEVCIRPGAKFGIRVKLKSKDEIHKLVEDFCAAKRNIDKGNQENQLEVVSEEMQRLLLNMAGLQPESLAELIKQCDNADTLPLKFLELLKLPERTREEIEYDKTSNQTGIEWLKETFKLINYGRHKEFSVPQRIDVIVPDNVFQFSDYELEIIDTQGIDKTAIRRDLLGYLNDQRTLTVLCSRFKDAPDREIYDLLENLIKNGAKKTLKERVLILALPQNDEADNMMNYAGDPVNSTDEAYNLKREEVQTKLQPLLQSIEGIDIPIIFFNAKSEEDNPAKIANELIKKLDNLRDSYVKQLSSTVEAINVLIKNQKEQNARDAYKEVSESLKIFLKDYRNKPLPLWNVYTSLIEQMEKTPASTIRATMRRNGTWHKFDVYLHLGNKARSNAWSATRPAFYGLKELVKNMNHKPKLEPAYNFLSEILANWEVWHEEFLKYAEQIGEQIFRPTLVKSYIWAECAALEGAGFREQVIWKLRPWFKNPEQQHLHNFLKNRIEEAWQEKVLAQLEKLTDKGTEGD
>NC_019738.1|WP_015182784.1|3306350_3306914_+|metal-binding-protein
MPSGQTHDRITLWSLPVVTGLTIASTQSGNLALIVSGGFLFSGLMLSPDLDLKSLPFKRWGWLRWIWIPYQKAMRHRSIFSHGPLIGTTLRMLYLATWTALVGILILGVVQLFRDVPWSWQQFGEDIKQWLINYQAEWIALFVGLELGAMIHSVSDWTSTALKRSQRKPKRKSTTRKRTPSRRTSKK
>NC_019738.1|WP_015182785.1|3306924_3307506_-|hypothetical-protein
MDSALDQAIEFLTTPSAIAPTPEAVVEALLMAEKAAKQSKRRYAYPQLLGTWRLGFITGTKKSRQRAGIMLGAGRFLPKWVKIHLSYSPSDSNQERGRVQNCVELGLLQFILTGPTQFWSKTNILAFDFTRMNVSLSGLKVYEGYIRGGKERETRFYEQSVKEQAFFTYFLVQNQSIAARGRGGGLALWTRIS
>NC_019738.1|WP_041780054.1|3307607_3308219_+|chorismate-lyase
MTATLKPTNSASVSTTWHALDPLWEGGEETVQQGLPHSQLAPAWQILLLGDGSPTRHLQLLTTEPTEVDVIDMSLIGMADDGAPKHIQAVPAPRLRRQVWLRTASGQRLAYAASWWDANHVDEYLQNRNIPIWASLSRLRSELYRDIQGIYYGHSEALELAFGEKGPFWGRHYLFWHHGQPLTLIYEVFSPYLKKYLGETHLT
>NC_019738.1|WP_015182787.1|3308423_3309935_-|amidophosphoribosyltransferase
MMHHEPLSSQQNLAQSEDGYAQRPDKQEEACGVFGIYAPGEDVAKLTYFGLYALQHRGQESAGIAAFQGDQVHLYKNMGLVSQVFNESILAELPGDMAIGHTRYSTTGSSRIANAQPALVETRLGKLALAHNGNLVNTGELREHLLQRNCNFTTTTDSEMIAIAIGSEVDSGKEWLEAALSAFGHCSGAYSLVIGTPVGLMGVRDPNGIRPLVIGTVGSHPQRYVLASETCGLDIIGAEYLRDVEPGELVWITEEGMASFHWSPKPERKLCIFEMIYFARPDSIMTDETLYSYRLKLGRQLAKESLVDADIVIGVPDSGIPAAIGFSQESGILYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLLGKRVVIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPVTHPCFYGIDTDSQDQLIAATKSVEDIAMQIGVDSLAYLSWKGMLESTGEDPNSFCSACFTGDYPILIPEMVKRSKLMLEKMQKAEKVVTV
>NC_019738.1|WP_015182788.1|3310118_3312470_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSSISSAPFSPEEIAAEGLKPEEYEDIVHRLGRHPNKAELGMFGVMWSEHCCYKNSRPLLKQFPTEGDRILVGPGENAGVVDLGDGLRLAFKIESHNHPSAVEPFQGAATGVGGILRDIFTMGARPIAVLNSLRFGSLEDARTRRLFSGVVEGISHYGNCVGVPTVGGEVYFDPAYSDNPLVNVMALGLMETPEIVKSGAAGIGNPVLYVGSTTGRDGMGGASFASAELSEQSMDDRPAVQVGDPFLEKSLIEACLEAFKTGAVVAAQDMGAAGITCSTSEMAAKGGVGIELDLDLIPVRESGMVPYEYLLSESQERMLFVAHKGREQELIDIFHRWGLQAVVAGTVIAEPIVRILFQGGVAAEIPATALADNTPIYHRELLAQPPEYARQAWEWTANSLPACTLEGIDIQGNHKTWSDILLQLLDTPTIASKRWVYRQYDHQVQNNTVMLPGGADAAVVRLRPLEVGIPNPKSAVAATVDCNSRYVYLDPYEGAKAVVAEAARNLSCVGAEPLAVTDNLNFGSPEKPIGYWQLASACQGIAEACRIMETPVTGGNVSLYNETLDATGTPQPIYPTPVIGMVGLIPDMTRVCRQGWQAEGDLIYLLGLPLTDSTPHVCLGGSEYLASIHGVVAGKPPVVDFDLERRVQAATREGIRQGWVRSAHDCAEGGIAVALAESCIASQLGAQINLRLTNIERRWDEVLYGESASRILVSVKPEHQARWESYLKEQWGEQTQHWQNLGFVKSQNAGLKLLIDDNQPIIDVTMIEMSERFSNALERRLNV
>NC_019738.1|WP_015182789.1|3312609_3313683_-|dihydroxyacetone-kinase-subunit-DhaK
MKKLINNPDDVVRESLQGMAVAHSDLIKVHLDPHFIYRADAPIQNKVALISGGGSGHEPMHGGFVGIGMLDAACPGEVFTSPTPDQMLEAANMVNSGAGVLNIVKNYSGDVMNFEMAAELAHSEGIPISNILIDDDIAVKDSLYTQGRRGVGTTVLAEKICGAAAEQGYDLQQLANLCRKVNLNGRSMGIALTSCTVPANGSPTFELGEDEMEAGIGIHGEPGRQRMPLKSADEITEMLAVSIIEDTNYSRTVREWDADTSQWIEVELTDPPLQSGDSVLAFVNSMGGTPLSELYIVYRKLAEVCQKHNLQIVRNLIGPYITSLEMQGCSITLLKLDEEMIKFWDAPVKTPALRWGM
>NC_019738.1|WP_015182790.1|3313830_3314292_+|hypothetical-protein
MDNGRSQTQKATRPKLWEGNLIYEIAKTLNSFLAANTIQTAVAAFQMLTFKDIVFVNMRPDALTDEDKKQFGMNGNNPIRIEGYKASDTNLPDVTDLQHLIKEVNFSQQRVLVMWFPDNVAVPNRIDTDKPLNMSIMALPVSVVKTELARFNP
>NC_019738.1|WP_015182791.1|3314350_3315376_-|DNA-cytosine-methyltransferase
MKTAIFNNKPLYWDFLELELQLPPREPTEPLVIDLFAGCGGLALGFEVAGFKTIGYEMLEDACATYQHNLHGTCYQLTLTRNPNLMTEPDVLVGGPPCQPFSVNGHQLGLQDSRDGFPIFIDAVDRYRPKIALFENVRGMLFRNKAYFEEIVIALKELGYIVEWNILNAAHYGVPQRRERLFCVAHQGGWQWPEKTHLNSPYTAGEALGEFAFVAPPNSKFLTSSMDEYVKKYEIASKCIKPRDLHLDAPSRTVTCRNLSAPTGDMLRIRLPDGRRRRLTVREGARLQSFPDWFEFQGSEDSQYNQIGNAVPPILAHAVACSVKACLQAHESISRTEFELS
>NC_019738.1|WP_015182792.1|3315400_3316060_-|hypothetical-protein
MCFSATASFTAGITLSVLGIITLKQVPSRREFLLGTFPLLFAIQQFSEGLVWLTLGQASLKPINALVTYNFLFFATVIWPISCPLAIYLLETQAVKRKMSLGLAFIGLAFGIYLFGFVLIHGVDSAKFSGNLLYDLNFIPFYEGNKYLYLIVTAFPFLLASELRLKLFGAFVLLSFGISELFYKVTFVSVWCFFAAVLSAGLYFIVRGFKYRDIQVVGE
>NC_019738.1|WP_015182793.1|3316177_3316549_-|Lin0512-family-protein
MARKRLIIEMGMGVDQHGQEPTVAAARAVRNAIAHNALPGVWEVAGLSDPDQMMVEVQVAVPYPEQVREAEVLAVLPFGQKTLTVESGGMVVQGRAIPSLHDKNDEMLVAVAAVTVWIESESR

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Crispr_ID: NC_019738_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_14

3339612-3339680

Orphan

Consensus_repeat	Method
TTTGGTCATCATCTTGGTCATCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_14

>merge|NC_019738|14|3339612-3339680|CRISPRCasFinder
TTTGGTCATCATCTTGGTCATCATCTTGGTCATCATTGGAGGCCGTTTGGTCATCATTTTGGTCATCAT

>NC_019738|14|13|3339612-3339680|CRISPRCasFinder
TTTGGTCATCATCTTGGTCATCAT	CTTGGTCATCATTGGAGGCCG
TTTGGTCATCATTTTGGTCATCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_172642238.1\|3349893_3352674_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|237426
NC_019738.1\|WP_015182825.1\|3355762_3356287_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182811.1\|3336728_3337373_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|312763
NC_019738.1\|WP_015182804.1\|3328067_3331175_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182809.1\|3334396_3335587_+\|TIGR00303-family-protein	unknown	unknown	gnl\|CDD\|235300
NC_019738.1\|WP_041780815.1\|3337449_3338673_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270379
NC_019738.1\|WP_015182817.1\|3345402_3345843_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239520
NC_019738.1\|WP_015182803.1\|3325999_3327973_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212673
NC_019738.1\|WP_015182821.1\|3349101_3349824_+\|hemoglobin-like-flavoprotein	unknown	unknown	gnl\|CDD\|381269
NC_019738.1\|WP_015182824.1\|3355231_3355672_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182810.1\|3335872_3336253_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182823.1\|3353138_3354647_+\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379073
NC_019738.1\|WP_015182807.1\|3332633_3333155_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_019738.1\|WP_015182816.1\|3344825_3345371_+\|RNA-2'-phosphotransferase	unknown	unknown	gnl\|CDD\|179136
NC_019738.1\|WP_015182818.1\|3345917_3347123_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223541
NC_019738.1\|WP_015182806.1\|3331756_3332464_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_019738.1\|WP_015182815.1\|3342241_3344302_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_019738.1\|WP_015182819.1\|3347269_3348166_-\|DUF3050-domain-containing-protein	unknown	unknown	gnl\|CDD\|378614
NC_019738.1\|WP_155898196.1\|3333450_3334161_+\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|226692
NC_019738.1\|WP_155898197.1\|3338688_3339159_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_172642238.1\|3349893_3352674_-\|PAS-domain-containing-protein	gnl\|CDD\|237426	PRK13558, PRK13558, bacterio-opsin activator; Provisional.	1.12982e-46
NC_019738.1\|WP_015182811.1\|3336728_3337373_+\|phycobiliprotein-lyase	gnl\|CDD\|312763	pfam09367, CpeS, CpeS-like protein. This family, that includes CpeS proteins, is functionally uncharacterized.	2.54459e-25
NC_019738.1\|WP_015182809.1\|3334396_3335587_+\|TIGR00303-family-protein	gnl\|CDD\|235300	PRK04447, PRK04447, hypothetical protein; Provisional.	9.62717e-171
NC_019738.1\|WP_041780815.1\|3337449_3338673_+\|extracellular-solute-binding-protein	gnl\|CDD\|270379	cd13661, PBP2_PotD_PotF_like_1, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from plants and plant-symbiotic cyanobacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.99961e-113
NC_019738.1\|WP_015182817.1\|3345402_3345843_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239520	cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies.	7.19561e-27
NC_019738.1\|WP_015182803.1\|3325999_3327973_-\|hypothetical-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0.000627352
NC_019738.1\|WP_015182821.1\|3349101_3349824_+\|hemoglobin-like-flavoprotein	gnl\|CDD\|381269	cd12131, HGbI-like, Hell's gate globin I (HGbI) from Methylacidophilum infernorum and related proteins. HGbI is a single-domain heme-containing protein isolated from Methylacidiphilum infernorum, an aerobic acidophilic and thermophilic methanotroph. M. infernorum grows optimally at pH 2.0 and 60C and its home is New Zealand's Hell's Gate geothermal park. The physiological role of HGbI has yet to be determined. It has an extremely strong resistance to auto-oxidation, and has fast oxygen-binding/slow release characteristics. Its CO on-rate is comparable to the O2 on-rate, and it is able to bind acetate with high affinity in the ferric state. The coordination of the heme iron changes in the ferrous form from pentacoordinate at low pH to predominantly hexacoordinate at high pH; in the ferric form, it is predominantly hexacoordinate at all pH.	5.96069e-64
NC_019738.1\|WP_015182823.1\|3353138_3354647_+\|Ig-like-domain-containing-protein	gnl\|CDD\|379073	pfam13205, Big_5, Bacterial Ig-like domain.	0.00122067
NC_019738.1\|WP_015182807.1\|3332633_3333155_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	3.56106e-30
NC_019738.1\|WP_015182816.1\|3344825_3345371_+\|RNA-2'-phosphotransferase	gnl\|CDD\|179136	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed.	1.09374e-91
NC_019738.1\|WP_015182818.1\|3345917_3347123_+\|AAA-family-ATPase	gnl\|CDD\|223541	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].	1.20863e-17
NC_019738.1\|WP_015182806.1\|3331756_3332464_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.65394e-49
NC_019738.1\|WP_015182815.1\|3342241_3344302_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	4.69451e-23
NC_019738.1\|WP_015182819.1\|3347269_3348166_-\|DUF3050-domain-containing-protein	gnl\|CDD\|378614	pfam11251, DUF3050, Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.	4.14725e-125
NC_019738.1\|WP_155898196.1\|3333450_3334161_+\|DUF2232-domain-containing-protein	gnl\|CDD\|226692	COG4241, COG4241, Predicted membrane protein [Function unknown].	2.87368e-47

>NC_019738.1|WP_155898197.1|3338688_3339159_-|hypothetical-protein
MPQSTWAQTSSIPTPSFEPLETKLLDETTLPPSSDWVTANTISPTSLTNPSLWWAEEQFDEFDGKLIQNWIAYRGKKRVDLVVNRQLWSILDYLGRYSFLSRFGAAARDYQYNVRVFNERAGLLATYTCNYSTTPPDCQLKVFDSFGRDSLPVRSK
>NC_019738.1|WP_041780815.1|3337449_3338673_+|extracellular-solute-binding-protein
MKRRSFLVSASALALGQLVSGCTREQPQSLNVQLLKGSIPARILNEFRQELQLPAQLNFDPANQLKDLFKRLQTWKQLAEKKDDRQGFSLPFVGKKTPKLADLVTLGDYWLESAIGQGLIKPLEVQELEGWKNLPSRWQEIVTRNQQGLLAKNGQVWGAPYRWGTTVIVYRRDKFEELGWTPKDWSDLWRPELRDRISLLDQPREVIGLTLKKLGFSYNHKNLSQVPNLKEELLKLHQQVKYYSSNQYLEPLLLGDTWLALGWSTDVLSVQSGYRQIDSIVPLSGTALWADVWVQPAPIAARSNTVKTSASSTPQQDSSVNMPLTKQWIEFCWKPLPAQQISVLSHAASPMFADVEPTKLPKTLRENRLLVPDSKVLKKCEFLEPLPQEISQDYEKLWTEIRNVRHS
>NC_019738.1|WP_015182811.1|3336728_3337373_+|phycobiliprotein-lyase
MLDFQEFFTACTGLWKTERIYHSLIEGQVERSFTEFRVESLTGDQKQQILSLSSLEGMQFDLAQVESGEIVCPGFAIAFDTLSETGEQVSMSLKALFIPDTYFDGVPEETSAAVPPLPLTAQVPATPEVIKGYYLRDEGYSEPGAVKSRFTYLPSRQTLEMTTYYRRSVAIDQMRLVAPDLRLRTIITYKRPETGEAPTVIDLVGFGVERRQDL
>NC_019738.1|WP_015182810.1|3335872_3336253_-|hypothetical-protein
MDAVQKQIVALSHKIDALYQMIDQLSCKVSDSLTEIKQMPRQETNPFSSAGQFRSHGYQSPSLLDSVMEHKDVLIDGKSEFTNSHQNSENALSADIQVQRLTAQLTAAYNRIAALEEQLLARRIHS
>NC_019738.1|WP_015182809.1|3334396_3335587_+|TIGR00303-family-protein
MIRIYTQIPQGNQWLQQYQGRRPILACILGFTATALIPGISAAGATPEDRRYTAIADAEFLVNGVTPQPQYPLPPLTAGASPVLISRAVVEALELPVYLFNAGLPQPPAVPAIDLGGVPAKCLSSGDALPLGTVKHLFEQGLKWGQKLADVTDGGYLILSECVVGGTTTALSILTGLGIRADGKVNSSHPTCNHAQKWQIVHQGLRRAGLESDPFQLVAAVGDPMQIAAAGMVIAATRRCGVLLAGGTQMLAVYALAQALSQQPTSDLAVPPPSSETGMGEGETGKEGFLPSSNPPITPLIWQPERIVVGTTRWVAEDPTGDTVGLARDIGGVPLLATQLSFATSRYPQLQAYEQGYVKEGVGAGGCAIAIHLYQGWNTVQLLQAIEALVERYCRS
>NC_019738.1|WP_155898196.1|3333450_3334161_+|DUF2232-domain-containing-protein
MSIDEDYLIDSPEEATFPPKYAQQERSQVVPKAPLAMVETAFLASAASLIWLINYYFPLGPVLRMFFPIPIALVYLRWGNRASWMAAIVSGLLLSVLMGPTRSILFVIPYGLMGVQLGAMWRRQSNWLFSILTGGLLGTLGFFFRFWLLSLLLGEDLWVYVMTQITQLTEWGFTRLGLLAQPSLTLIQALAVVMIIISNLVYLFVVHLVALLLLDRLGNPIPRPPNWVQVLLDYEG
>NC_019738.1|WP_015182807.1|3332633_3333155_+|universal-stress-protein
MSFKKILVAINHSPLSPHIFRAAMELAQPNHAALRLIHCIATEMIAEPTVPMSYDPGLQPTQAMGGYQTQQLLMEQQIESAQALLDRYRQTALNQAVIIEADYHVGEAGHLLCQVAKDWQADLIVVGRRGLSGLAEALLGSVSNHVVHHAPCSVLVIQEIESAIDGEVVTDLA
>NC_019738.1|WP_015182806.1|3331756_3332464_+|Crp/Fnr-family-transcriptional-regulator
MEDRYNSHEMNSNVNELICAAPFFAGLPEATVEQSTAHVVTRSHPANRVILLENDWGGSVYFILEGWAKIRTYNLDGKEVTLNILGKGELFGEMAALDEVPRSTDVITLTPTTIGSIPAQDFVQLVHSEPLAGVRLSQLLAKRLRQVNRRLRLRESDSTSRVADTLLFLAEGQGKLKQEGTEIPNLPHRELSSLSGLARETVTRVLTKLEKKGLIKRDNDIMYIPDVGALEKIIA
>NC_019738.1|WP_015182804.1|3328067_3331175_-|hypothetical-protein
MTSLKDIQSLIADLDSILPKAETRLPWSKPGDVARERRVLERVRSYLVSQQQNLVIGSKQSPVPTTPAQPEAVVQQIVQAVTQEMSFLRADIMQPLQADLDVLRQQREALVQEIQQLEHQRRQIDSINQRSTPQQQMISELSQGVIDRCTASLTQHLAQILANFERRVINAESPQRLLDTSVVPQWAIAPATAEQNPMEGVMQAQASQEQLRQLQKNSDQWLTTLEANQRAIFETLSQDLQAYQTSLSQGLERMHSLGSQSEMVFTAWVNRTLEALARETSAPLSSSVPPSDLASPTQATGIRATTPETQPSDPLPVAEQEPRSVQPETAKEEDSSPLSTDDPQMMPQADSWQSLRAQPLGRSHPDTSESPSPDKALENLISEDWEIVEGLDTENLDLERGENDPLETFIQLDINEQGFFSSQDVVNTPNALDDPQADFLLNWLNERQQSDSDLPADAVTELDKTEVAAELTLSLDRRRQEIDELYQSLFGTEALTDTSHLNESDLVEGEADASEPIAASQEGEAITDHHSINTDSVMPLPAQVEDVLFAGLGMDSAAEPAHPASLSSPTQPAIEAVGELAPSWEAVLFEEPAPHTPNQTARGQDAQLSSNTDDSLLHRIGINEQEDIETIGALTDLFEEMGLNPPATATEATENHSMPMPAPPQSECSTPDPEASLAEDHYITASPEEDLLETASLESDPDRAICLDPNTLQQLQQDLYSFETSFEQNAPRQEEQSWLSYDLEESTSAPETVPDDEHNQPFFMPPQESLAEDWEEFVIQHWITRHELDDEAISTAPELVASDFDPDLFPSEALELDQESTIQRREATSEEFVPPSELIQPGDAPTYFAVEEENLVDEMRWDEPTDSMTEEALMAQWDAVASCPAPELELDSDFFTQDALDTDLEGEGSSMMPGALRDEEHSESSNPTPDLLLPQDVLAHDLEPLPKDEVDLGQHKTEHLEQSTPEDQLLPPQEQVPPPAQGLTEDMPSENLTPEEQASGEANFEVNFPETEASNSEPSDNPQKMNPSSDSDAQP
>NC_019738.1|WP_015182803.1|3325999_3327973_-|hypothetical-protein
MPEPSQQPEAIANNAAWYLGIDLGTTGVSAVLLNSTTGQRYPIYWSYEIARQPEELPTVKPPFTFYGSDKPIFRLPALTYSEPATNSLSVEPSSTAMVVGALASPLAHNQPGVFLEKFKPYLNLGIPYYCPKRHEWEPTLHLPNQQIISLYRVRQSLQALLATLTPNRTQPNDLIQVGAQGLGSETLTAALQQLQGVIMGSPATWGDTYRLNVREAVLAAKLVKYPEQIFFVEDAIASVLAGLLSLGSGGAGENLSNPTHEKEQSFTAEVSSTTLSSPELLTQSPIASSPSPWRGGTLVLNIGATTTELTLVNLPVDLQDLIYSDFSLCSLPYAGDAIEQDILCQLLYPQLSAEQQQQLALHEELKALQPGQPESQRRDRLAWMLQSSPLGQALLKAASCLKLILQHQEKFSLDLSQQQFTLTRLDLEDRVLQPFLQVLNQQLNVLLIETGISEHGIEQILLLGGTANLIALTQWLQKRLPNATLIQDIDLPRESWLAAGLASLPLYPQVLNRTRQQYSDYFLLLELLRAFAQTTGEAATRAYSLEEIMQQLERRGVNTGACYERIVRLVEGQLPEGLVPALEEAILLSPTSKQNSIYGQVAASPGLFSREDDGSKETGKGNRLYRLNLKQQSFLHNYMKIILSSIYQKFEEPLILR
>NC_019738.1|WP_015182815.1|3342241_3344302_-|iron-uptake-porin
MKSCLSFEKTASSALIFATLSCFTANFAPAHAAPPTRPATVSESIESSTQEFSASTDLLKLTQTAELAPATNPQTGLALANPTDEFAITTPTEQAGVEATEPTVNEIAVVTPTHPLLQPDTSLTDLKTARRSTEALGETNLKDLTIKPPLQAQVLPADEASESLSPAIMPLDPLEEVEADASMDQVTNVTQLSDVRPTDWAYEALRSLVERYGCIAGYPDGTFRGNRAMTRYEFAAGLNACLQQIERLVGGGGSNFASKQDLEALRRLTNEFQTELAAIGTRVDNLEGRTARLEDNQFSTTTKLFGQAIFGVQGRSDNSFDFFLNRLEDQGTNINVVDNVQLSLFTQFSPRSLLLTGLAAGNGNNSTTRLDKFVSLGYESGNNNNLELSDLNFRHLLTNKLAVILGPVGVNPVNVFRGVNRVESAGSGPLSRFAQRNPIINIGGNGGGIGFDYQLATRVSLQGVYSANRSNDPFNGGIFGGNEGSTTAGAQLVVSPMDTLDVSLQYLNNYSPSGDLLTGVGDDVLAIQTVNAAGFLRAPMQTNAFGLGVEWRLSPRFTIGGWGGYTTSNFKDGPGSVETVNWMAFMNFPDLLGEGNLAGIYVGQPPKITSSDLPTGRNRPSFVNRGDFSAGEGDQPDTTLHLEGFYRIRVTDNISVTPGVIVILNPNHNDNNDNITIGALRTTFTF
>NC_019738.1|WP_015182816.1|3344825_3345371_+|RNA-2'-phosphotransferase
MNNSRLVKISKYLSKHLRHTPEQIGIELSPGGWVAVDELLAACKKRSFVINRSELDEVVAKNDKKRFAFDSTGSLIRANQGHSVEVDLQLEPAIPPDILYHGTGHGAVEAILQEGLCKMSRHHVHLSTDITIAEKVGLRHGRPVIFQVNAAAMYEDGYTFYCSENGVWLVDNVPSEYLQLL
>NC_019738.1|WP_015182817.1|3345402_3345843_+|NUDIX-domain-containing-protein
MRQVKSCGFIVMRTQPQLSFLLLMKHSSRYDLPKGHIEVGENELSCAFRELYEETGIAASSLHLDQTFRFTTIYQTSEQRFGLQEIAEKTLVIFLGWLKQDVKLQLSEHDAYIWVDWKPPHAIQKKTIDPLLAELEQHFHKNEIRF
>NC_019738.1|WP_015182818.1|3345917_3347123_+|AAA-family-ATPase
MSSGYFSNEENPTRHNLQSRGLLGAGWRPLSRQFDLDFLLHLASKDPWELTQKTLDFASDIADTLGRNQYAWWANILNIFSENMRYELDEFWDYITPTPPVPDHRYGDVLSVDTPVNQLVSRNSIPIDYVLTRLQEITVFNVLDLLGNPELITQYYMERIFYFPVNRFVNWERLEIIGTAFAYWSQQQVWLQIDHLGRGQRRYTIIAKNITPLINKATYNLAVMLSGYQSRVGQIHSQFPIRTFPVDIQSFTDTVQQAILDQNQLAVLVSGEPGTGKTAWTQAVAKEILMPLGFVIFILDHDAVENFVPPNYLERICIIINEADNLAQNRASTAAQSSNKTEHILSLLDGTLYQSVVDESGIQHRQKLVVLMTCNTTERLDPAILRKGRIDLMSEFTHLYV
>NC_019738.1|WP_015182819.1|3347269_3348166_-|DUF3050-domain-containing-protein
MVDQYARLIEGISPLRNSLINHPVYTQLCDLKSLQIFMESHCFAVWDFMCLVKTLQARLTCVTTPWLPPSDIFSARLINDIVLAEETDEVAPGYFISHFDLYVAGMKEVSANVIPIQNFIRQLREGKSVQVALNNVATLTTTKAFVLNTIKATHKTTHEVAATFLLGREDVIPSMFRRILQSLGDSSIDCQQLSLYLERHTHLDEDVHGPMGEQLLRNLCGDDDEKWKQSTFAAQQALLARISLWDGLVLQLRQGRHSTPTLTRKPMTFVSNLPEGKNWWQGTSAQGSINIPDSIHTW
>NC_019738.1|WP_015182821.1|3349101_3349824_+|hemoglobin-like-flavoprotein
MPAKDFLNSVQKKQLQQTLRDSEQPHLREGCLILLLINDGKTAREITDLLGCSFRTVAYWQFNGFPENLESLPDEQELEYRPDQQEPEYLAHQRERRNSHKALEDFIPLSDIKVLEVSFALIQPQATEFASKFYKNLFTDYPQLQPLFAYTHIEVQEKKLITALVLVINNLRKLTYLKNILKDLGTRHVRYGTIQEHYPMVGGTLLKTLESFLGKEWTPEVKRAWTHGYKAIANLMQEEH
>NC_019738.1|WP_172642238.1|3349893_3352674_-|PAS-domain-containing-protein
MVAKKASCRVLDANQSEPVDIGNKRVYDRALAATSCGIVISDARCFDNPIIYCNPAFLKITGYSQEEVIGRNCRFLQGHDTDPIAVEQIRQSIRTGQEVRVVLKNYRKDGTLFWNDLTISPVRDSSGKVTHFIGVQTDITERKQAEETQQLMQFSIDRAADAVFYIRPDGTLFYVNETASKALKYSREELLRLSIQDIDPNFSLSVWQSHWQQVREGGSFSIETQHRAKDGQVFPVEVTFNYLRFNNQEYNCAFARDISEAYRQAQASKQAQKALQRSNALLKAQQESDPNGVLVTDETGATLSYNQRFCEMWQIPEGMRQLGEHKIIFNWLLPLIQEPQRVFSQMEYLEENPSLISREEIHLTNGRVFDCYSAPARSPEGESYGRIWSFQDITEQKQTETRLRQQAERERLVSGINQRIRQSLNLDEVLNTAVEEVRQFLACDRTLICRFNLDWSGTIVVESVGEEWTPASAINIQDTCFQESKAHLYQKGRIRAINDIYNTDLSPCHIQLLERFQVRANLVVPILQGDKLWGLLIAHQCSKTRDWQDSTIELLRQISVQLSVAIQQAALFKQLAEELAERKAAEAALRRSKQALKTQATELKKALNDLKQAQLQLIQTEKMSGLGQLVAGVAHEINNPVTFISGNITHAEMYAQDLLELVELYTENYPQPVPAIAKQIEVIDFDFLKKDFPKLLKSMEIGAYRIRQIVLSLKNFSRVDEAERKLVDIHEGIENTLLILQHRLKPEAGNIQLVKEYGNLPFVECYPGQLNQVFMNLLNNAIDALEKSVPVVTTEHHTTQATTPSQPKTKIIKISTEVADCSPSQTSNSDEIGTPQNVIIRIADNGSGIPKDVKKRIFDPFFTTKPVGEGTGLGLSISYQIIVEKHGGQLECLSVPGEGTEFIVQIPLAPSKIKTLQTTTLPSGEG
>NC_019738.1|WP_015182823.1|3353138_3354647_+|Ig-like-domain-containing-protein
MSGQTVTPKKFLQPIDRAALGVMVVLSLLISILLLSGDRTAPRVRDFSWQNQQVSAEDTAFILTFSRPMNHDSVEANLKIEPPIPGKFSWAGRRMAYTPKFPVPYGNQYKVELKGARDQISARENEGKQMQPFSASFRTRDRAFAYIGVEGKEQGRLILYNLTTQKKSILSPADLVVMDFKPYPEGEKILFSASDRKYQEKGLLNQQLYTVTTGISFQSDDQSAAELPPEGRLNLVLDSKDYQNLKFDLSGDGKTIVVQRLNRRNPGDFGLWIIQPNAKPRSLGNQPGGDFIIAPDSGSVAVAQGQGVAILPLQPQTKPLDFLPKFGILLSFAKDGSAAAMVKFNTDYTRSLYLVTNQGTQKELLRTTGSIQSCEFALGRNTLYCLLTQLIKGEQYEEEPFFATIDFTPDPKSTQVSVKPLVVLPNQRDIQMSLSPDGLALLFDQIVTRPPTATDTLRSNDGQAIATGWLWMLPLTEDTSSTPPSQIKPEQLLPGFHPRWLP
>NC_019738.1|WP_015182824.1|3355231_3355672_+|hypothetical-protein
MNLFQHCRKILTALVLILVLTTTAACSGGVQAKQPSNSLPTTLNSNGYYTQLERGNSPVGQDFGNWVVQTAQGVVQDAYVRDNNKLGVVITRQVRPNEVKPLAKSLVQGFHKNFPNQDLKVLVYAPDKKLILTAQYDEQSKLIEYQ
>NC_019738.1|WP_015182825.1|3355762_3356287_+|hypothetical-protein
MTSSEQYKRQILNDLAQGNVESLDDAPTNTAQEYENFDDFAQRSSAAERRHLFGRSLHPDKIPPSQMEPELQKAIAQIKPNERDDVARAFFKHLKQRGLSDRNLEQQLGLSTHHASRMSAEDVSKLASFAYHSHPDIFQEVLTEQPGIMKFLSNPVVAAVLGVAAAKWLGNRHK

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Crispr_ID: NC_019738_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_15

3557701-3557913

Orphan

Consensus_repeat	Method
GTGTCGATTTGGGCAGTTGCCGTTCGACTCACTTGCAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019738_15

>merge|NC_019738|15|3557701-3557913|CRISPRCasFinder
GTGTCGATTTGGGCAGTTGCCGTTCGACTCACTTGCAAAAGAAATACAACGACAATTTAGAACAATTGTACTATAAGCTGAATTTTGGAGAGGTGTCGATTTGGACAGTTGCCGTTCGACTCACTTGCAAAGAAGGCAAAGCTCGCTCATACTCAACAAAAATTTTTCAACGAGATGTCGATTTGAGCAATTTCCATTCGACTCAATCACAAA

>NC_019738|15|14|3557701-3557913|CRISPRCasFinder
GTGTCGATTTGGGCAGTTGCCGTTCGACTCACTTGCAAA	AGAAATACAACGACAATTTAGAACAATTGTACTATAAGCTGAATTTTGGAGAG
GTGTCGATTTGGACAGTTGCCGTTCGACTCACTTGCAAA	GAAGGCAAAGCTCGCTCATACTCAACAAAAATTTTTCAACGAG
ATGTCGATTTGAGCAATTTCCATTCGACTCAATCACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015182991.1\|3560274_3560670_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319947
NC_019738.1\|WP_015182977.1\|3543709_3546274_+\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NC_019738.1\|WP_015182978.1\|3546285_3546576_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NC_019738.1\|WP_015182994.1\|3564429_3564783_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182984.1\|3555946_3556372_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NC_019738.1\|WP_041780070.1\|3556410_3557664_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NC_019738.1\|WP_015182983.1\|3554431_3555514_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|184487
NC_019738.1\|WP_015182986.1\|3557925_3558282_+\|YciI-family-protein	unknown	unknown	gnl\|CDD\|226318
NC_019738.1\|WP_015182989.1\|3559467_3559809_+\|DUF1579-family-protein	unknown	unknown	gnl\|CDD\|377882
NC_019738.1\|WP_015182995.1\|3565081_3565486_-\|response-regulator	unknown	unknown	gnl\|CDD\|381104
NC_019738.1\|WP_015182987.1\|3558376_3558808_+\|YciI-family-protein	unknown	unknown	gnl\|CDD\|226318
NC_019738.1\|WP_015182988.1\|3558867_3559278_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899
NC_019738.1\|WP_015182981.1\|3551811_3552948_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NC_019738.1\|WP_015182992.1\|3560962_3563572_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235751
NC_019738.1\|WP_015182993.1\|3563961_3564168_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015182979.1\|3546853_3550528_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_019738.1\|WP_041780069.1\|3546638_3546860_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_155898004.1\|3559334_3559553_+\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176903
NC_019738.1\|WP_015182980.1\|3550759_3551806_+\|dihydroorotate-dehydrogenase-like-protein	unknown	unknown	gnl\|CDD\|236051
NC_019738.1\|WP_015182982.1\|3552966_3554031_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015182991.1\|3560274_3560670_+\|VOC-family-protein	gnl\|CDD\|319947	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.93956e-26
NC_019738.1\|WP_015182977.1\|3543709_3546274_+\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NC_019738.1\|WP_015182978.1\|3546285_3546576_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	1.22708e-31
NC_019738.1\|WP_015182984.1\|3555946_3556372_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.71672e-61
NC_019738.1\|WP_015182987.1\|3558376_3558808_+\|YciI-family-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.84108e-41
NC_019738.1\|WP_015182983.1\|3554431_3555514_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|184487	PRK14071, PRK14071, ATP-dependent 6-phosphofructokinase.	1.33686e-161
NC_019738.1\|WP_015182986.1\|3557925_3558282_+\|YciI-family-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	2.43255e-35
NC_019738.1\|WP_015182989.1\|3559467_3559809_+\|DUF1579-family-protein	gnl\|CDD\|377882	pfam07617, DUF1579, Protein of unknown function (DUF1579). A family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Sinorhizobium meliloti and Agrobacterium tumefaciens.	1.50277e-34
NC_019738.1\|WP_015182995.1\|3565081_3565486_-\|response-regulator	gnl\|CDD\|381104	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains. Thermotoga maritima RR468 (encoded by gene TM0468) is the cognate response regulator (RR) of the class I histidine kinase HK853 (product of gene TM0853). HK853/RR468 comprise a two-component system (TCS) that couples environmental stimuli to adaptive responses. This subfamily also includes Fremyella diplosiphon complementary adaptation response regulator homolog RcaF, a small RR that is involved in four-step phosphorelays of the complementary chromatic adaptation (CCA) system that occurs in many cyanobacteria. Both RR468 and RcaF are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.03024e-66
NC_019738.1\|WP_041780070.1\|3556410_3557664_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	6.26146e-155
NC_019738.1\|WP_015182988.1\|3558867_3559278_+\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	1.50016e-40
NC_019738.1\|WP_015182981.1\|3551811_3552948_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NC_019738.1\|WP_015182992.1\|3560962_3563572_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	0
NC_019738.1\|WP_015182979.1\|3546853_3550528_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_019738.1\|WP_155898004.1\|3559334_3559553_+\|SRPBCC-domain-containing-protein	gnl\|CDD\|176903	cd08894, SRPBCC_CalC_Aha1-like_1, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.86365e-13
NC_019738.1\|WP_015182980.1\|3550759_3551806_+\|dihydroorotate-dehydrogenase-like-protein	gnl\|CDD\|236051	PRK07565, PRK07565, dihydroorotate dehydrogenase-like protein.	0
NC_019738.1\|WP_015182982.1\|3552966_3554031_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	7.8605e-175

>NC_019738.1|WP_041780070.1|3556410_3557664_-|RNA-polymerase-sigma-factor
MASTAKSDVAQTIAAVYRTEWGRIVAILIRLVRDFDLAEEAAQEAFAAAVNQWESSGIPDLPRAWIIRTARYKAIDRLRRRTRLTEKLEWYAASGLIPSTEEPTYDSDEIGDDHLRLIFTCCHPALAIETQVALTLRMLGGLETDEIARAFLVPTATMAQRLVRAKRKIRDAGIPYKVPDLGDLPSRIEAVLTVIYLIFNEGYAATKGDSIVRADLCTEAIRLGQLVRQLLAPQPPSEVTALVALMLLHDSRRDARLDEAGDLILLEDQDRSRWNHPQIAEALPLVEEALRSGTGVYALQAAIAALHCQAARAEETDWAQIVRLYKVLERLQPSPVVTLNRAVATAMAEGPQAAFRLIDQLAPELDSYHLFHAIRADLLRRVGVLEEATQSYRRALELVTNDSERRFLERRLREVQP
>NC_019738.1|WP_015182984.1|3555946_3556372_-|VOC-family-protein
MDNNPSILSHVSIGTNDFERAIAFYDAVLPTLGCKRLMEHPGAIAYGKQYPEFWVGTPFDGQPATVGNGTHIGFIALTKEAVHAFYEAALAAGGKDEGAPGGRPDYSEPYYGCFVRDLDGHKIEAAFWDEQLEQELNQNND
>NC_019738.1|WP_015182983.1|3554431_3555514_+|ATP-dependent-6-phosphofructokinase
MKTQKRIGILTSGGDCPGLNAVIRAVVSHATLTYDWEVIGIPYATQGLLEQKAIALSRHGLDLRGIDPLLSMGGTILGSINKGNTLEHADEIIASYQALALDALIAVGGDGSLSILNDLACRGNWQLVAVPKTIDNDVALTERSIGFDTAVNTITDALNRLTFTAASHDRVMIVEVMGRSTGHLALHAGIAGGADVILLPEIPYSIQGVCRTLAELRDRWAHKFAIVVVAEGAKTTNEVLSCDPALPSLTPQCGIGQYIAEQISRYSTMPIDTRVSVLGHIQRGGIPSALDRLVATTFGKAAVDLVAQGQLRQMVAWQNGRVVAVPLAEVLAHSPLPVDPNGYLVKTAQALGIYVGDVLA
>NC_019738.1|WP_015182982.1|3552966_3554031_+|hydrogenase-expression/formation-protein-HypE
MTGLKNFTLSCPIPIQQYPTVLLAHGGGGRLMHQLIEQMFLPIFGSPNDVQHDAAVLSISSHRIAFTTDSYVVRPLFFPGGDIGSLAVHGTVNDLAMAGARPLYLSVGFILEEGLPMETLWRVVQSIKQAADRANVKIVTGDTKVVDRGKGDGIFINTAGVGILEHNQRINPTSVQPGDIILLSGDIGRHGIAIMAVREGLEFETTIESDSAPLADLVGELLSANIEVHCLRDLTRGGLASALNEIASAANVAINIDEQKIPVREDVRGACELLGLDPLYIANEGRFIAFVPSSDAERALGVIKAYQEKMGDVKTACAIGQVREQPAKSVIVNSKIGVDHLLEMLSGEQLPRIC
>NC_019738.1|WP_015182981.1|3551811_3552948_+|hydrogenase-formation-protein-HypD
MKFVDEYRDAQLAQQYAEAIASIATRPWSIMEICGGQTHSIVKFGIDTLLPKTITLIHGPGCPVCVTSAEIIDEAIALAALPNVIFCSFGDMLRVPGSAISDAASTPSDLLTVKASGGDVRMVYSPLDALKIAQNNPDKQVVFFAVGFETTAPATAMAVYQAYQQGVTNFSLLVSHVLVPPAMEAILSSPTCQVQGFLAAGHVCTVMGYREYEAIAPKYRVPIVVTGFEPIDILQGIYFCLKQLEEGRAEVENQYARSVRRQGNEAAQHLIQDVFEVVPRCWRGLGEISQSGLGLREQYAPFDVHNKGLLPISPSPHPPMSSECISGLILQGIRKPHDCPAFGSRCTPEHPLGAPMVSSEGACAAYYRYRQRSPITVS
>NC_019738.1|WP_015182980.1|3550759_3551806_+|dihydroorotate-dehydrogenase-like-protein
MNLTTTYMGLELRSPLVVGAAAPLTEDIDNIKRMEDAGAAAVVLHSLFEEQIEQEMLTIHHHLEQGTESYAESLTFFPEPEIFHVGPSLYLEHIRKAKERVNIPIIASLNGSTLGGWTNYARQIEQAGADALEINIYYIPTEIHLTGAAIEQQYLDILKAVKASVTIPVAVKLSPYFTNLANMAHQLTREGADALVLFNRFYQPDIDVEELEVRPNVLLSTPQAMRLPMRWIAILYRRIGADLAATGGIQKGVDVVRMLMAGAKVTMIVSSLLRHGINHLQEIEQELRHWMQEHDYSCVSELQGIMSQRSCPNPSEFERVQYMKAIQTYTPKPPVLAETAYVVYQQED
>NC_019738.1|WP_015182979.1|3546853_3550528_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MPLKNFATIDGNEAVARVAYRLSEVIAIYPITPASPMGEWADAWASAAQPNLWGTVPSVVEMQSEAGAAGTVHGALQAGTLTTTFTASQGLLLMIPNLYKIAGELTPAVIHIAARSLAAQGLSIFGDHSDVMAVRGTGCGLLCSASVQEAQDLAAIATRATLESRIPFLHFFDGFRTSHEIQKVELLSDDDLRAFIPNELILAHRDRALTPDRPVIRGTAQNPDVYFQARETVNRFYNACPGIVQQAMDEFAQLTGRQYQLYEYHGDPAAEQVIILMGSGCETVHETVDYLNARGAKVGVLKVRLYRPFDGTRLVAALPESVKAIAVLDRAKEPGSTGEPLYLDVLSALVESNRQTIQVVGGRYGLSSKEFTPAMVKAVFDNLTVDQPLNHFTVGIYDDVTHTSLNYDPSFSIEPDNVVRAIFYGLGSDGTVGANKNSIKIIGEETDNYAQGYFVYDSKKSGSVTVSHLRFGPQLIRSIYLVDSANFVACHQWEFVEKFDLLGTAKPEAVFLLNSPYNSEETWRRLPERLRAQILEKQLKFYVINASQVAREVGMGRHINTVMQVCFFAIAGVLPREEAIARIKQSIRKTYGKKGETIVEMNLKAVDRTLDNLYEVEYQNYQQAAIPSQVGEAPSPVPDTAPAFVRDVLGKMMARQGDDLPVSALPIDGTYPSGTSKWEKRNIAQEIPVWDADVCVQCGKCVMMCPHAVIRSKVYEPEALENAPETFKSANAKDHDWTNLKFTIQVAAEDCTGCGLCVDICPAKNRAEPRKKAINMAPQLPLREQERENWDFFLNLPNPDRSKLKLHKIAQQQMQEPLFEFSGACAGCGETPYVKLVSQLFGDRMLVANATGCSSIYGGNLPTTPWTHNAEGRGPAWSNSLFEDNAEFGLGFRVAIDKQMEYARELLQELSSSMNGSSPIPVDLASAILNAEQKDEADIVEQRERVAILKQHLEEWCNQLEGDQNLKSKIQTLKSLADYLVKKSVWLIGGDGWAYDIGYGGLDHVIASGRNVNILVLDTEVYSNTGGQMSKATPRGAVAKFAAGGKPAPKKDLGLMAMTYGNVYVASVAMGARDEHTLKAFLEAESYNGPSLIIAYSHCVAHGIDMTTGMQQQKAVVESGRWLLYRYDPRRTERGENPLILDSRSPKISVEQAMYSENRFKMLTRTKPEDAKRLVELAQADVNTRWQMYQYLAAQHLGKPNGHHDGHTDAGATSSKQSEPSTAQ
>NC_019738.1|WP_041780069.1|3546638_3546860_-|hypothetical-protein
MALPHPLFVITKVQFVHAWQARFISMLEINIEAIVRIKINIHKDEWIEIEIENPRFCVGWVEQRKTQRNPIYC
>NC_019738.1|WP_015182978.1|3546285_3546576_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAVPGKVIGIEENSERNGNSSLWRTGKVSFGGIIKEVSLAYVPDVKIGDYVIVHVGFALSIVDPEEAEETLNYLEQLEVKPSPINAVLGEVSSS
>NC_019738.1|WP_015182977.1|3543709_3546274_+|carbamoyltransferase-HypF
MVTTASGFIQNSTKRRLCLAVEGIVQGVGFRPFVYGLAKDVGVVGWVKNTDRGVSIDIEGTIEQLQVFQKRLEQDKPPHAFLQHIETEWMSLAGYTDFDIRPSDAADSSISTPKSALILPDLATCPACLHEIYDPANRRYRYPFTNCTHCGPRFSILRSLPYDRPNTTMQQFQMCPECRAEYQNPLDRRFHAQPNACPTCGPHLELWDRQGKTLASHDQALLQTANAIRQGKILAIKGLGGFHLVVDAGNETAVRTLRDRKRRPDKPLALMYPSLELIREHCQVSEEEEKLLCSSEAPIVLLQSKIQNLKSKIAPSVAPGNPDLGVMLPYTPLHHLLLSELGFPIVATSGNLSSEPICTDELDALNRLQNIADLFLVHDRPIARPVDDSIVRVVGEQPIVLHEHFKPHPSPPLTKGREQEVSPLTKGGLRGVSSIRAGGLIVLRRARGYAPFPITPPSKLTSHDSSIILAVGAHLKNTVALYLNHQILMSQHLGDLDNLSTIDRFQEAIHHLLNIYEVQPVAIATDAHPDYYSTQFANALIELNAQSKQATEQKRFPSALCPLPSAFRTSTPVIPVQHHYAHVLSCMVDNQLEPPVLGIAWDGTGYGLDGTIWGGEFLNIPANGFERTAHLRSFPLPGGEQAVKEPRRCALGLLYECFGNRAFEMVELAPLQAFSPQELKVLQTMLQRGLNTPKTSSAGRLFDAIAALLGLCQQASFEGQAAMQLEFAPNGFKTNETYPYELLCPVDSPMILDYSPMLNAILDDIHEQISQEIVAAKFHNTLIEGMVAIAKRVGVEQIVLTGGCFQNCYLLECAIARLNREGFSIYWHHRIPTNDGGIAAGQIMAALRVLQNQS
>NC_019738.1|WP_015182986.1|3557925_3558282_+|YciI-family-protein
MKYMLLIYMDENALSETEREHCYVESAQVAQDLHTQGQFVASAPLHPVATATSVRVREGKSLVTDGPFAETREQLGGFFLINAQDLDEAIAIAARIPGARAGTVEIRPVLEIARLPAY
>NC_019738.1|WP_015182987.1|3558376_3558808_+|YciI-family-protein
MKVMVFVKATQNSETGVIPSEQLLTEMGQFNEELAKAGILLAGEGLHPSSKGVRVKFSGTERTVTKGPFTPAQELVAGYWLWQVDSMKEAIAWVKRCPNPMPGDSEIEIRPVFEAEDFGELLTPELREQEDRIRAQVETRQQE
>NC_019738.1|WP_015182988.1|3558867_3559278_+|VOC-family-protein
MKLNPYLMFNGNCEAAFKFYEQCLGGKITMMMTHKEAPSAENVSPELHDKIMHACLELEDRLLMGSDCPPEYFEPPQGFYVQISAPEPDEAERIFHALAENGKVKMPIAQTFWSVRFGMLIDQFGTPWMVNCEQVV
>NC_019738.1|WP_155898004.1|3559334_3559553_+|SRPBCC-domain-containing-protein
MTTFKTSREIPATMEQVFAAISDSERLARWWEPAGFTNTFKEINNGNEPNRTNLTHACSTSKRTSVAPETCR
>NC_019738.1|WP_015182989.1|3559467_3559809_+|DUF1579-family-protein
METNQTGQTSHMPVQPQKEHQWLQKLVGEWTYETEGLMEPEQPPVKSTGTETVRSLGGLWILAEGQGEMPGCGPATTLMALGYDPQKQRFRREDYLMRLNLLLDDTTYSYLSI
>NC_019738.1|WP_015182991.1|3560274_3560670_+|VOC-family-protein
MEITASAISLNVDDVTTSAEFVKQHFGFKEEMSAEGFVSLSRPDAGFNLIFLQTGLKSFKPAHLRGHRADGLLVVFVVDDIDREYIRLQSEGVTITTPIETEPWNERFFQVTDPNGVVLQLVQWISEQVSS
>NC_019738.1|WP_015182992.1|3560962_3563572_+|phosphoenolpyruvate-synthase
MSSLVVGFQDIDQTKLTVVGGKGANLGELSKIEGICVPDGFCISTEAFQRVIEKTPSIHELLDQLSFLKVNDRDKIHELSSKIRRIIEGIAIPEEISEAIAHFLSRLGEQNAYAVRSSATAEDLPTASFAGQQDTYLNIIGKEAILKHIHKCWASLFTERAVIYRLQNGFDHRKVYLSVVVQKMVFPQAAGILFTADPVTSNRKVLSIEASFGLGEALVSGLVNADSYKVRNGMVIDKKISTKKLAIYALKDGGTKEQEIEPERQNRQALTDEQILQLERIGRTIEAHFGSPQDIEWCLVDDTFYIVQSRPITTLFPIPETNDQENHVFVSVGHNQMMTDAMKPLGLSFFLLTTHAPMHTAGGRLFVDVTATLASPVGRETILNVTLGKSDPLMKDALTTILERGDFVKSLPDDPSPGKSRKGRSLADFQTLNDCDPAIVADLIQQSQTSIEALKQTIQTKSGSDLFDFILEDIQQLKKTHSDSQSFGVLMTGMNASSWINEKMNEWLGEKNAADTLSQSVPNNITSSMGLELLDVADVIRPYPEVIEYLQQVKEDNFLGELVKLEGGQEAQNAIATFLHKYGMRCVGEIDITRTRWSEKPTTLVPTILSNIRNLEPGECDRKFEQGQQEALKKEQELLERLKQLPDGEQKVNETKRMISLIRNFIGYREYPKYGIVSRYFVYKQALLKEVEQLVQAGVIHEKEDIYYLTFEELREVVRTNKLDYPIISKRKDEYKFYEKLTPPRVITSDGEIIAGEYKRENLPAEAIVGLPVSSGVIEGRARIVLNMEDADLEDGDILVTSFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVDNATKLIKDGQRIRVHGTEGYVEIL
>NC_019738.1|WP_015182993.1|3563961_3564168_-|hypothetical-protein
MTSIRDLVQEALAAGHLSVTAEEQLRWLLRSKYSTEDLRAFMDLQLAAMNGLVKQESRELLLYQQESK
>NC_019738.1|WP_015182994.1|3564429_3564783_-|hypothetical-protein
MSKQLVNLTLPVVTEEIENILETYPAHPYQQVFSAAGLRQDLIAYVLSRVPNTYTVIEETQSSLNPTLLPHYSSERLLNIEHWIHLGIRDVLHVYNRSNCYMPQTVSVNPTTSSLVG
>NC_019738.1|WP_015182995.1|3565081_3565486_-|response-regulator
METAIATKRILFIDDELHVRQVVKACLEALGGWNVLLAASGQEGLVKAASEKPDAILLDVMMPEMDGLALLQQLKANPVTGSIPVVFLTARLSLTEPQRFHELGVQGAIAKPFNSLTLVPQIANALGWKVEIQY

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Crispr_ID: NC_019738_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_16

3653441-3653594

Orphan

Consensus_repeat	Method
GCGATCGCTCATTTATTCCCTCCCAACTTTTCCAGCAACGCTTGCCACA	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NC_019738_16

>merge|NC_019738|16|3653441-3653594|CRISPRCasFinder
GCGATCGCTCATTTATTCCCTCCCAACTTTTCCAGCAACGCTTGCCACAGCCCAATCTGCTGCTGTAATTGCTGGATGCGATCGCACCTCGGACAATGAGGAAAAGCGATCGCTCATTCATTCCCTCCCAACTTTTCCAGCAACGCTTGCCACA

>NC_019738|16|15|3653441-3653594|CRISPRCasFinder
GCGATCGCTCATTTATTCCCTCCCAACTTTTCCAGCAACGCTTGCCACA	GCCCAATCTGCTGCTGTAATTGCTGGATGCGATCGCACCTCGGACAATGAGGAAAA
GCGATCGCTCATTCATTCCCTCCCAACTTTTCCAGCAACGCTTGCCACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_155898006.1\|3651603_3651912_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183068.1\|3656337_3656640_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183073.1\|3660715_3661291_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_051055703.1\|3662281_3662842_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180967
NC_019738.1\|WP_015183069.1\|3656740_3657055_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183066.1\|3653690_3653933_-\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|279710
NC_019738.1\|WP_015183067.1\|3654121_3654472_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183074.1\|3661297_3662107_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_019738.1\|WP_172642242.1\|3649492_3649915_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341176
NC_019738.1\|WP_015183059.1\|3646393_3646972_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_015183056.1\|3644841_3645666_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NC_019738.1\|WP_015183060.1\|3646972_3648049_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_019738.1\|WP_081594698.1\|3649924_3650899_-\|transposase	unknown	unknown	gnl\|CDD\|376574
NC_019738.1\|WP_015183061.1\|3648236_3648839_+\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019738.1\|WP_071884131.1\|3651928_3653380_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019738.1\|WP_015183071.1\|3657276_3658590_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NC_019738.1\|WP_015183058.1\|3646253_3646394_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183072.1\|3658888_3659929_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|180967
NC_019738.1\|WP_015183062.1\|3648880_3649468_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019738.1\|WP_015183070.1\|3657051_3657261_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015183066.1\|3653690_3653933_-\|CopG-family-transcriptional-regulator	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00342272
NC_019738.1\|WP_172642242.1\|3649492_3649915_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341176	cd17287, RMtype1_S_EcoN10ORF171P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli N10-0505 S subunit (S.EcoN10ORF171P) TRD2-CR2, and Herpetosiphon aurantiacus S subunit (S.HauORF5277P) TRD2-CR2. The recognition sequences of Escherichia coli N10-0505 S subunit (S.EcoN10ORF171P) and Herpetosiphon aurantiacus S subunit (S.HauORF5277P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.32551e-63
NC_019738.1\|WP_015183059.1\|3646393_3646972_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.41001e-48
NC_019738.1\|WP_015183056.1\|3644841_3645666_-\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.46044e-48
NC_019738.1\|WP_015183060.1\|3646972_3648049_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	9.56321e-07
NC_019738.1\|WP_081594698.1\|3649924_3650899_-\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	4.75611e-39
NC_019738.1\|WP_071884131.1\|3651928_3653380_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.85087e-20
NC_019738.1\|WP_015183071.1\|3657276_3658590_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.42505e-161
NC_019738.1\|WP_051055703.1\|3662281_3662842_-\|hypothetical-protein	gnl\|CDD\|180967	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB.	5.93586e-43
NC_019738.1\|WP_015183072.1\|3658888_3659929_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|180967	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB.	1.06025e-40
NC_019738.1\|WP_015183062.1\|3648880_3649468_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.11394e-44
NC_019738.1\|WP_015183074.1\|3661297_3662107_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	4.63214e-37

>NC_019738.1|WP_071884131.1|3651928_3653380_+|pentapeptide-repeat-containing-protein
MLAGHLSWKTVKGNQAFRWMLQIAIAIAAKGGHTFRGANLTDADFTGATLKLCDLRGANLKRTRLFEAKGLEFSRLGNTYLANPKIRQLVVTLNGQAQNFDGLNLEGVNLQDANLQDASFIGANLNHANLQNTDLSRAILKQAQLDGADLTGAILTGACIEDWGITGTTKLEGVRCDYIFMRLETKDNPDRLRKPDNWRETFADGEFSDFIKPYVDTLDLYHSQDIDPRAISIALKNLSVNHPEEKLQFVAIERRGGNGLNLRFTTAPGADKSELSHEYFTDYARIKKELPIAVQLRLAEQDAEIRTLKGTIEQFIEAGTHQSKIQAETIQVIQGELVVTENKGINITSGGGSIGDISGLVGGDVSGVVNLGTISGNVTNTINQLPDASEPDQPNLKELLTQLQQAIENDSNLSDPDKADLLEQVQVLAEAKQTEEPAKKEGLARKARKMFDATLSSLPQTASIVEACSKLLPMVLKALGVSA
>NC_019738.1|WP_155898006.1|3651603_3651912_-|hypothetical-protein
MGIARTIGITLNVRMVAAAIRIVGINTLTAATGIDSITTAARVIDSPVIAIPEATRTMEPAPVKKEVPMSIPVSFVGRIVDRSKNGVNDAMPTITPSGNPLR
>NC_019738.1|WP_081594698.1|3649924_3650899_-|transposase
MKLLTELLNIKGIKVISHRQHEGIGIIVQVELIGKESNCPRCGAKSRRLHQNHRHIVKDLPWGEMPVFLEINRRQFKCEKCEKPFSEQLEFVSSRRTYTKRLANQIIQDVLENDIHSVAKKGVVTTAEIERMLKDASKDLLKIKPIDLKRLGIDEIALIKGKGNYCAVLVDLIKTAKCREEKAEHSPVLEGLKKSKYVLLKNESDLSEQQKVKLIQVKNVSLTLKRMHELKEQIRQIFTQTQHWLAGLFHLGGWLKQAKSYFPDSQKTIIRWLDEIIAYFDNRTTSGVVEGINNKLKLIKRSAYGFRNFDNYRIRCLLNWHFIC
>NC_019738.1|WP_172642242.1|3649492_3649915_+|restriction-endonuclease-subunit-S
MGMREILIKSENFENSSLDRKPEDWEVSKIEELAFISSGSTPNRSIAAYWQDGTIPWVKTGEINYTVIKSAEEKITQKALNETSVTVYPVGTVLVAMYGQGLTRGKVGILGIEATTNQACAAIIPKNENLIPSYLWFFRM
>NC_019738.1|WP_015183062.1|3648880_3649468_+|Uma2-family-endonuclease
MVAVSDRQYFTPQEYLDWEEQQSIKYEYIDGEVFAMTGGTIPHNDLAVNLTTALKNHLRGKGCKVSMADAKVGVSERGPFHYPDVMVTCDERDRRAIRVIYYPCLIVEVLSPSTEAKDRGKKFQNYRRISTLKEYVLISAEQKVIECFRLNEKGVWELYTYSEGDEVELKSIDFRCPIELVYEDVMLEVVEEDEE
>NC_019738.1|WP_015183061.1|3648236_3648839_+|hypothetical-protein
MAYSDFSTLSKFKKAFNLRIDEESDLFATVEAVQPSESLANTLEETVELALAINTEKARSEMMITPMLLEVRRRANYQISLFSGSDFNVDFEKGLNGYCDFIISRSKEQLTINAPVAIVVEAKNEDIKGGLGQCAAAMLAAQLFNQQEGNDIKTIYGAVTTGDIWRFLKLEDSDVFIDLSNYYIKDVDKILGILFKSIQV
>NC_019738.1|WP_015183060.1|3646972_3648049_+|hypothetical-protein
MDYLDFVPAITQRGQIKAFIESDAGVQATEAKLYGVFSAWWQLHAPGLGELPKTKKVMELRAEFLSSFVDSLQSVGLLDRFKVAGVVASWWDEVKYELRTLSESDFGGLVDSWVDTIRDALEQDEETQNNQTKFDPLNHKLVVRLMPDYLEEIAEAEARIAELEQQKEAFERGEEAEAEEGEATEEESEAVNFAKELETRLKTLKGSIKEPKKDIKDLRKNSPLLNAAKIAELEAMVEPMEAEIAEIEKQLEPYKEIKKQLAQAKGILRTLKNELVKRLEAKRAALTDEECQGLVLAIFQDGLTAQLERYVTAHRQQVIVAVENWWDKYRVTLQDIEGERDAAAKQLSEFLSGLGYAN
>NC_019738.1|WP_015183059.1|3646393_3646972_+|Uma2-family-endonuclease
MMSVTLQLPPVLKLTDEQFEQLAAANQDLQLELTAKGELIIMPPTGGDTGNRNFEVYIDLGIWNRQTRLGKAFDSSTGFRLPKGGTRSPDASWVRIERWNALSEEQRKKFLPLCPDFAVEVVSETDDVEETRSKMQEYINNGLRLGWLINPRTRQVEIYRPNQVVEVLQSPATLSGEDVLPGFVLDLQPIFA
>NC_019738.1|WP_015183058.1|3646253_3646394_+|hypothetical-protein
MGKLTLPQLERHLFSAADILRGKVEAKRSLLEAHGFNPTRILVERN
>NC_019738.1|WP_015183056.1|3644841_3645666_-|PHP-domain-containing-protein
MIELHCHTTCSDGTLTPTQLVQAAVQAGVFALAITDHDTLSGWNEALAAAKPYNLEIVPGVELSTVHRDRSLHILGFYPNADQLKAPLAERIEGRKRRAHEMVAKLAELGYPISLPQLGEGVAPSRPHLAKALVEAGYFPSMEKAFDRLLGDNQPAYVQYEKFSISEGIALLRDCGAVPVWAHPYLFRGGAVEDVLKELVEVGLMGIEVYHPSHTSKQTKNLEALCVEYGLLMTGGSDYHGPSPDGKAQSISLNMMQLPLGLLDPIKHAAHRLK
>NC_019738.1|WP_015183066.1|3653690_3653933_-|CopG-family-transcriptional-regulator
MRDRRKKKQNQAERMAWGEAKERFSIMLTPTAAQKIDERAKALGLSRSELLEQAARGVVSISDTEMNQEDKENLGKPSAN
>NC_019738.1|WP_015183067.1|3654121_3654472_+|hypothetical-protein
MTKNQAISLIDGYQQALEDFAIAPLITRLKTYSDADFDAAWMNLTQPELESLAAILIRELTANLNGKAIAGYLNALRHGSIDIPPSLVHLVFGPPSIDLPANFPDVQTPRYLGLAE
>NC_019738.1|WP_015183068.1|3656337_3656640_+|hypothetical-protein
MKPRPLTEREQTLIDFYGYCQLGMTPQQFYAKWQVNHEAIAFICSRSMSTVRRWFRRGKNYRRPQPSDLRHLALMDFLLEHYQDIPEQLLNALCSPKRNP
>NC_019738.1|WP_015183069.1|3656740_3657055_+|hypothetical-protein
MRTFKANQRKANNHRASGRRIAQEIEIIRAALKRRGYRIRKQPKQAAWAVYVTDDKFYLLTYQPAPISAWVLHPQDNDSTRATLSNLIQRALTKQPAGNTRRNS
>NC_019738.1|WP_015183070.1|3657051_3657261_+|hypothetical-protein
MTTYLERLSPWCLVRLLPKMQRLTVGRFRRWNDAHEHMRCSCSEDRRSHELGQANAKDFSFPPLISRRS
>NC_019738.1|WP_015183071.1|3657276_3658590_-|2-oxo-acid-dehydrogenase-subunit-E2
MIHEVFMPALSSTMTEGKIVSWVKSPGDRVEKGETVVVVESDKADMDVESFYEGYLAVITVPAGESAPVGAAIALLAESEAEIEQVKQQAAQSSQGTAVSTPQKDSVPTPTPGQVEAAPVAAQDTPSPRNGRIVASPRARKLAKELRVDLNSLKGSGPYGRVIAEDVEAAAGKGSTPAATPAATTTAPKPTSTPAPTTPAPRPAPTPAVPVAALGETVPFNTLQNAVVRNMVASLQVPTFHVGYTITTDELDKLYKKIKTKGVTMTALLAKAVAVTLQKHPLVNASCVEQGIQYHSSINIAVAVAMPGGGLITPVLQQADQVDIYSLSRNWKDLVERARLKQLQPEEYSSGTFTLSNLGMFGVDRFDAILPPGQGSILAIGASRPSVVATEEGMMGVRRQMQVNITCDHRIIYGADAAAFLQDLAKLIETDPQSLTL
>NC_019738.1|WP_015183072.1|3658888_3659929_-|rhodanese-related-sulfurtransferase
MLDVRTNLSNFIPQGNPVGKLTQLPVVGNRFVQTQVPQMSVQQLQQLLTKNATNLLLIDVRYNSEFNIAHLPGEWFLIPYPQIKSGAALAKIKKLIQDKQQHHPNEEIQVLILCRAGIRSAHSVFRLQQAGIKATNITGGIDAWRDYIDPSLPTYVRKDIPEIKLSLANKRVPKQRWLSGCGVALALGAVGAVGAVRYNSDLLRPVIQAGVPLAVASDLPIIGDAIQEASEPVMSVQQLKKLMNSKQENYLLVDVRTPDEYKFSHIPGAVSLPLQDIEQGKGINAIKSQLKGRKLLAYCTTGKPSARALVLLQKAGIAGTKVQGGIEAWTKEIDPSLPRYQGRKIS
>NC_019738.1|WP_015183073.1|3660715_3661291_+|hypothetical-protein
MSGQLKNSLVLLASVAITLSACNRVNVESRNIEGNRSELTPQETTPVKSPSPLVTPSPILSQDKSEIKTSSASVKVNRENYKPIALTQLTKNEALTGEEPKAIALAAFGDVDSEGGSRDVKVEYPQPDRAVVIITQTGVADDSVRAIRYRAELVPTSKSQTGKQWKIVWAGSQFTCQRGRGHQDWSIKLCS
>NC_019738.1|WP_015183074.1|3661297_3662107_-|YdcF-family-protein
MFDSNLCERTLNKLPIFIPWWQIEWLNQPLLLALALFVFFVILWLIKYRTWKHKLKNRKFYWFLFIFTAIFPLFILFSSKLLVVFLPTDPGAKADAIVVLGRGGGEFYDYRVNLAAKLWNNGQAPQIFVSGIADAPSMIEQLKAKGISPQSIDGENCSLTTAENATFSAAILQSRGVQRIILVTDEPHMLRSMLVFRANGFTVIPYTTPLPSYLGFKDETFLVFREYGGLIGYGLQGLFFPKDSPESSRSDILELIQKAREYGKQRSLK
>NC_019738.1|WP_051055703.1|3662281_3662842_-|hypothetical-protein
MKNTLENQLTQTKQRPSKKLWLYGVGVALALGAFGALAAVRHNPDLLIPVIKAGVPVKWASNVGFVDYAIKRAETPQISAQELKQLIDSKDKNYLILDVRTPEEYKLSHIPGSVLVPLTEIEAGSGIQKVKSMLNGRRLIAYCTHGYRSGVALVRLQEAGVEGIQYSGGIKEWTEKIDPSLPRNNW

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Crispr_ID: NC_019738_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_17

3859458-3860565

TypeI-D

I-D,II-B

Consensus_repeat	Method
GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC	PILER-CR
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CRISPRCasFinder
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CRT

15 spacers

cas2,cas1,cas4,cas6,PD-DExK,cas3,csc1gr5,csc2gr7,cas10d,WYL

The CRISPR arrays of NC_019738_17

>merge|NC_019738|17|3859458-3860565|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACAAAGGAAAGCATCATGATTACCAAGCAGAAAAGAGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACGGGAAGGCGTTCGTTCATCTTGAATTTCAAACGGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACTTCATGTGAGAGCGGATAAACGCCTCGATTTGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACGACTTGCAGTCTACAAGCCATCTACCTCGATTGAGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACACCAGTTGATGAGCCGTCTTGTAGTGGAAGTCCTTGCGTTTCAATCCCTGATAGGGATTAAGTCGAATTTAAACGAGGAGCGGGAGAAAGGGGCACGAATCATTTTCACGGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACGTTCCTCGTTCGGAAAGGCTCTTTGGCCCAAGCCAGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACACACCACTAAAGCCGTTTGCCTAATTGGCGCTCAAGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACCCCAAGACTCGTATTCAGAGGCTTGATCGATCGCCGCGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACAGCAAATGGCAAGATGAAATCTTAATCGCTGTCGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACCGATCGCCCTTGGACTTGATAGAGGTGAAGTTCTTGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACTAACGTTTCCCGTGACATTAAGAACCAAGTGTCTGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACTTTTAAGGCTATTCGTGGCGAAAAATGACCGGGCTGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACCCCATTCTCTCACCGGTGAAACGCAGGATATCAGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAACACAATCCTGGAGGAATTTCTCTAGTTTGGCTCTGGTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC

>NC_019738|17|5|3859458-3860565|PILER-CR
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	AAAGGAAAGCATCATGATTACCAAGCAGAAAAGA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GGGAAGGCGTTCGTTCATCTTGAATTTCAAACG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TTCATGTGAGAGCGGATAAACGCCTCGATTT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GACTTGCAGTCTACAAGCCATCTACCTCGATTGA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACCAGTTGATGAGCCGTCTTGTAGTGGAAGTCCTTGC
GTTTCAATCCCTGATAGGGATTAAGTCGAATTTAAAC	GAGGAGCGGGAGAAAGGGGCACGAATCATTTTCACG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GTTCCTCGTTCGGAAAGGCTCTTTGGCCCAAGCCA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACACCACTAAAGCCGTTTGCCTAATTGGCGCTCAA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CCCAAGACTCGTATTCAGAGGCTTGATCGATCGCCGC
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	AGCAAATGGCAAGATGAAATCTTAATCGCTGTC
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CGATCGCCCTTGGACTTGATAGAGGTGAAGTTCTT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TAACGTTTCCCGTGACATTAAGAACCAAGTGTCT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TTTTAAGGCTATTCGTGGCGAAAAATGACCGGGCT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CCCATTCTCTCACCGGTGAAACGCAGGATATCA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACAATCCTGGAGGAATTTCTCTAGTTTGGCTCTG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC

>NC_019738|17|16|3859458-3860565|CRISPRCasFinder
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	AAAGGAAAGCATCATGATTACCAAGCAGAAAAGA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GGGAAGGCGTTCGTTCATCTTGAATTTCAAACG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TTCATGTGAGAGCGGATAAACGCCTCGATTT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GACTTGCAGTCTACAAGCCATCTACCTCGATTGA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACCAGTTGATGAGCCGTCTTGTAGTGGAAGTCCTTGC
GTTTCAATCCCTGATAGGGATTAAGTCGAATTTAAAC	GAGGAGCGGGAGAAAGGGGCACGAATCATTTTCACG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GTTCCTCGTTCGGAAAGGCTCTTTGGCCCAAGCCA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACACCACTAAAGCCGTTTGCCTAATTGGCGCTCAA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CCCAAGACTCGTATTCAGAGGCTTGATCGATCGCCGC
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	AGCAAATGGCAAGATGAAATCTTAATCGCTGTC
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CGATCGCCCTTGGACTTGATAGAGGTGAAGTTCTT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TAACGTTTCCCGTGACATTAAGAACCAAGTGTCT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TTTTAAGGCTATTCGTGGCGAAAAATGACCGGGCT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CCCATTCTCTCACCGGTGAAACGCAGGATATCA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACAATCCTGGAGGAATTTCTCTAGTTTGGCTCTG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC

>NC_019738|17|4|3859458-3860565|CRT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	AAAGGAAAGCATCATGATTACCAAGCAGAAAAGA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GGGAAGGCGTTCGTTCATCTTGAATTTCAAACG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TTCATGTGAGAGCGGATAAACGCCTCGATTT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GACTTGCAGTCTACAAGCCATCTACCTCGATTGA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACCAGTTGATGAGCCGTCTTGTAGTGGAAGTCCTTGC
GTTTCAATCCCTGATAGGGATTAAGTCGAATTTAAAC	GAGGAGCGGGAGAAAGGGGCACGAATCATTTTCACG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	GTTCCTCGTTCGGAAAGGCTCTTTGGCCCAAGCCA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACACCACTAAAGCCGTTTGCCTAATTGGCGCTCAA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CCCAAGACTCGTATTCAGAGGCTTGATCGATCGCCGC
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	AGCAAATGGCAAGATGAAATCTTAATCGCTGTC
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CGATCGCCCTTGGACTTGATAGAGGTGAAGTTCTT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TAACGTTTCCCGTGACATTAAGAACCAAGTGTCT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	TTTTAAGGCTATTCGTGGCGAAAAATGACCGGGCT
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	CCCATTCTCTCACCGGTGAAACGCAGGATATCA
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC	ACAATCCTGGAGGAATTTCTCTAGTTTGGCTCTG
GTTTCAATCCCTGATAGGGATTAAGTGGAATTTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015183232.1\|3854538_3854895_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NC_019738.1\|WP_015183229.1\|3851105_3851561_+\|DUF3531-family-protein	unknown	unknown	gnl\|CDD\|371866
NC_019738.1\|WP_015183238.1\|3863130_3863976_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019738.1\|WP_015183235.1\|3860815_3861088_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019738.1\|WP_015183228.1\|3850427_3850943_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NC_019738.1\|WP_015183226.1\|3847369_3848047_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NC_019738.1\|WP_015183236.1\|3861090_3862095_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_019738.1\|WP_015183241.1\|3866954_3867746_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_019738.1\|WP_015183243.1\|3868774_3871486_-\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	unknown
NC_019738.1\|WP_015183233.1\|3855442_3856675_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|224482
NC_019738.1\|WP_015183242.1\|3867749_3868763_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_019738.1\|WP_015183240.1\|3864673_3866962_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_019738.1\|WP_015183244.1\|3871674_3872547_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019738.1\|WP_015183225.1\|3846911_3847268_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|315619
NC_019738.1\|WP_015183234.1\|3856922_3859238_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274400
NC_019738.1\|WP_155898208.1\|3848279_3850355_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_019738.1\|WP_015183237.1\|3862361_3862955_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019738.1\|WP_015183231.1\|3852160_3854389_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NC_019738.1\|WP_015183239.1\|3864010_3864619_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019738.1\|WP_015183230.1\|3851647_3852100_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240044

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015183232.1\|3854538_3854895_-\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	2.05806e-42
NC_019738.1\|WP_015183229.1\|3851105_3851561_+\|DUF3531-family-protein	gnl\|CDD\|371866	pfam12049, DUF3531, Protein of unknown function (DUF3531). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.	8.85288e-96
NC_019738.1\|WP_015183238.1\|3863130_3863976_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.07465e-52
NC_019738.1\|WP_015183235.1\|3860815_3861088_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.13368e-36
NC_019738.1\|WP_015183228.1\|3850427_3850943_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.46295e-51
NC_019738.1\|WP_015183226.1\|3847369_3848047_+\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	7.82973e-49
NC_019738.1\|WP_015183236.1\|3861090_3862095_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	8.96144e-154
NC_019738.1\|WP_015183241.1\|3866954_3867746_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	3.5292e-64
NC_019738.1\|WP_015183233.1\|3855442_3856675_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.96921e-16
NC_019738.1\|WP_015183242.1\|3867749_3868763_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	6.64527e-170
NC_019738.1\|WP_015183240.1\|3864673_3866962_-\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.49798e-100
NC_019738.1\|WP_015183244.1\|3871674_3872547_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.03679e-09
NC_019738.1\|WP_015183225.1\|3846911_3847268_+\|cupin-domain-containing-protein	gnl\|CDD\|315619	pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR.	4.77911e-18
NC_019738.1\|WP_015183234.1\|3856922_3859238_+\|glycosyltransferase	gnl\|CDD\|274400	TIGR03030, Cellulose_synthase_UDP-forming, cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.	6.2942e-113
NC_019738.1\|WP_155898208.1\|3848279_3850355_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	5.09812e-17
NC_019738.1\|WP_015183237.1\|3862361_3862955_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.98705e-55
NC_019738.1\|WP_015183231.1\|3852160_3854389_-\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.51317e-54
NC_019738.1\|WP_015183230.1\|3851647_3852100_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240044	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.13464e-33

>NC_019738.1|WP_015183234.1|3856922_3859238_+|glycosyltransferase
MRVSPASRKVSQPKHKPLPKTQTKNLVPPWIWAIFIASLLFFVGTVYFTSWTSTGPTFLPSELSSPSSVFISPFITPLTPPGVRYLPEFLHLPENSVEILWPVAGAALLSVLTCIVPSTNWTRLIVKVILIVLATRYMIWRTVGDTMNFSTWFSSALSLWLYAVEVFGFVGLVLTSLQTIWSNARLRSAQADRYYQDIQSGQYLPSVDVFVPTYSEQDFIVRRTVVGCQAMDYPNKKVYILDDSIRPQMKALAEELGCGYVTRKPGTINKHAKAGNLNNALPQTDGELITVMDADFVPFKHFLTRTVGFFQQRDVAIVQTPQNFYNPDHHTRNLGIDHLFPNDLAQFFEHDQSTRDVANAAMCCGTSYVIRRKALESIGGYFTRCVSEDSSSSTLLLTRGWRVVYLNETLSMGESTRNYRDFLKQRMRWLQGNLQIFYCAKEVPIWSKMNWIQKSYMVTHLTGCFQPLVRVTFLLSPLVSLYLGVSSYISTLPEFLYYCAPFLLLLVGTFSWASNYCNSYFYSEVHQTILCFPGLIRLFSTLKSPFGKGFAVTPKGVTVGKKNYNFRSTWPLLLVMALTFIIIGLQLMGYRMGLWQVLSNPEFGLVFYWLIYNCIIMGLSVLAAIDQPEKRLMDRFPLRTACKLTCGNRHYWGHTDDVSEGGAGMTLITEEVIQRHSSVVLEFLEGGVSLEAEVVKSRRKHHSTSVSVRFTNLTPEQNRHIIEILYTEKNWWKRSKRIGGLDSFLAILSAFLRFRPVMTVYDGQSSGQNKI
>NC_019738.1|WP_015183233.1|3855442_3856675_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MQGQPTSPLTDDLVAPRSLIANLLIFFVSAGLIALSARLLHTRITSVISRDAVINGTLININAPEEGTVTDLPLKTGEALTKDKTIVTLKNDRVSQLQVQGIQSRINEQQAQLDRAKAQLDRQKALLQTLLEDQQNQYRLEISEAQDSVAQVESQLKAAQARYRIAQSSYNRSNFLRKEGALAQTQLDTATRELEESKQDVATLESRLKAIRTSQNATQLGLSLSRSRTNYDPKIRLQELQLQIADQRKAIATLEQNIKDAKAELIQAKTDTQRQEKVLVKVPTSGVVWRLSAQIGQYVQQGATLGQVLDCSRRWVDVFVDEQAVRSIQPGTLATIKLYGSDSEVLQGRVSMIRSGLGRLAAGEDVAVPITPNMPRNSQVRVDLESGSAQGESNLMCYVGYTGRVTFKVQ
>NC_019738.1|WP_015183232.1|3854538_3854895_-|dihydroneopterin-aldolase
MDCIQLTGIRCYGYTGYLAEEQVLGQWFEVDLTLWIDLAPAGESDDITDTLDYRQAIETVKQLVKTAKFALVEKLASAIATALLELEPVQQVRVQLTKPAAPIPDFGGKITIDITRTR
>NC_019738.1|WP_015183231.1|3852160_3854389_-|S8-family-serine-peptidase
MINKRFFSRILLTGYILGVGSASPLVLSAPSSAQAQASDELYYTYFEQKIPLTLRSDAIAVAFKPVGRTRGTRSNQPLHLQLQQDLQKGAGTRGSTRAGTLKVEVSPLGENYALVNLPSGTRSSPTAVQQQIQQQPYVETTLPVLSRPATPSPSPHKRPQLIVLPNEILVNFKPGVSESEKQSILAANSLEMIRPLRFSQNRYLVRSKTVTGTAVLGVANRLNSQAKVQSATPNFIQSLTNQSYSSASIPGATLKPPHASWKLKNPLLSLLKADNSPIKTALLPVQWHLNSTPLSTCLNQRREDKKGLMEYLTTCFNNRTLQAAKTSLPRTDMRVIDAWKNSNQGNNVVVAVIDTLIQWNHPDLAGNLHNVGDIPDRLPGEVSGWDFVENDPDTRMSKNELTILKGKFQDAFLATADELRQKYPDTFQEAEQENPEQSVEEIANRVRYRLLNSEVAGEFHGTMVAGVVTARPQEESGVVGVAPKAKLLPVRVLGLNGSFSVTAYLEGMGYAASRGADVINISLGGRVPTQGEAELISEVLQANPKLVIVASAGNENLNEIGFPAAFPGVVAVGATNLAGNRAPYSNYGATHPLGQGVTLVAPGGDMSSPGLIGGILTTGGTWLDEFWQDLPTPGNWGPNQDTKGKYRWTQGTSFSSPAVAGAIALMKGEDSTRRLTREQLVTILKQTASYNGLAVNEDDAKLYRSQLAEKGIPRSISQQQYFFGSGLVNADAAVKVVKQKLR
>NC_019738.1|WP_015183230.1|3851647_3852100_+|NUDIX-domain-containing-protein
MQPNKIRLKVLGLIRDDDRASQQNRPIRTLLAQGYDPVKQQTFYRALGGSVDFGETSYDALKREFNEELHAELIHIKYLGCIENLFTFNGQPGHEIIQLYQCDFADPKFYQCDQLEFTEGEDKHTAFWLDIPECKSGNLRIVPEEFLDYL
>NC_019738.1|WP_015183229.1|3851105_3851561_+|DUF3531-family-protein
MQVQFREFNPFDLWIWLEFSTVPSQMEKEYVEEVFNSWFLLGKLGGFDAENLQVQDVGLDISYMDYDEQIADNSMMALMHNKSEFDYQGTWGRCWFDLGTSDAIAIDVLINALRQLAKEYVAIERLVIGGENEDWSIGRDSRSLFYEANQN
>NC_019738.1|WP_015183228.1|3850427_3850943_-|N-acetyltransferase
MLSFASETENTTTGIREVVTAAFGQPSEANLIEAIRHSPDFIPELSIVAVEKGTVLGHILFSPIVIETQPESVPALALAPLAVTPARQREGIGRQLVQVGLSKCRELGHKIVVVLGHSDYYSSFGFQKASLFGVQAPFSVPDEAFMVLELQPDALMGVSGIVRYPSYFDEV
>NC_019738.1|WP_155898208.1|3848279_3850355_+|iron-uptake-porin
MVYGLPLQATANQVPSKEAIAKVPPSPLSLEAPADVPSLAITDQTPSEVKFQDNSSSPLGWTGIDLESALSPLERTCYMSQRINSLADEPLNAECEVNKVTSIAELTSHTREINPNPVQDTVSIPPPIISQTNPVESFAEIPTLEVPSVAELSSGDGDSDSMSQVTNVTQLRDVSPGDWAFEALRSLVERYGCIAGYPDGTYRGNRATTRYEFAAGLNACLQQIERMMKTGGDGFVTRQDLETLQRLTEDFKTELASLGTRVDQVEGRVAYLEDHQFSTTTKLSGLAWFNMTGANAGRNVKVEAINAASPDVRFAGRGADGRPLVQEVGNPNITMSGLTWLTFNTSFTGKDLLVTQLAAGNALSPANQFASAGLFNTFGTPFLDQTAGPNNGFAEVVIHDLFYQFPVSNKIQLVVGPRVNWHRYFDNNAFTFFLTGGSTFNSNGTTVHDPIDRGSGVVALINLSKQFDLHVGYLGENNEFLPAAFGFNTSSNPSKGLFSGTNTITAELTYKPTPTANIRLIYSHNTLDNNGGVVSAEPIYGVADDGQGGRIKPATVNAFGVNFDWLLTSKFGIFGRYSYASTEIDPSTPGRSGGNINSQAFQFGLGFPDLGKPGALATLSFLVPFDVLSGRRFLVAGGGDGGTQYEFEATYHYPITNNIAIVPAFYWIGNANNFDSNPAIYVGNLRAQFSF
>NC_019738.1|WP_015183226.1|3847369_3848047_+|cysteine-hydrolase
MVSISAQPYDYELPAHGGLALLIIDMQRDFLEEGGFGDALGNDVTRLRAIVPTLKELLAAFRAYKLPIFHTIEGHQPDLSDCPPSKRHRGRGELKIGDVGPMGRILVLGESGNGIIPELQPLPGETVITKPGKGAFYNTHLESLLHEQGITHLLITGVTTEVCVQTTMREANDRGFECLLVEDATESYFPAFKQSTLDMIVAQGGIVGWTASAANVLQSLAKWKS
>NC_019738.1|WP_015183225.1|3846911_3847268_+|cupin-domain-containing-protein
MQRVLILKELFDIAAHQDELSWEPFHPGVDIYRLYKDSESGAAAALLRYKPGASVPMHVHTGFEHIFVLSGSQTDENGEHQTGTLVINSPDTHHSVMSQAGCIVLAIWEKPVLLCQES
>NC_019738.1|WP_015183235.1|3860815_3861088_-|CRISPR-associated-endonuclease-Cas2
MYVVISYDIPEDKRRTKIHSILKSYGQWMQYSVFECELTETQYAKLRSRLGKVIKPDEDSIRFYGLCACCQGKVERIGGEQLRDNSIFFA
>NC_019738.1|WP_015183236.1|3861090_3862095_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYITQEDSFIGKTDERLIVKADKKNILDVPFIKVEGVVVLGRATVSPAVVSELMERKIPLSFMMGTGKYLGRLEPEMTKNIFVRKAQWQAAGETEQSVHVVRGFVRGKLKNYRSILNRNQRKYSELDWQAAIDRVQNAIAPIDKTNSINSLRGLEGAGSAAYFGAFNQLIRVEGFSFAARRRRPPTDPVNALLSFGYSLLRHDVQSAVNIVGFDPYLGYLHFEHYGRPGLALDLMEEFRPLVVDSMVLNAINHGILKPSDFTSEPLSNAVFLSPEGRREFLRQYEMKKQSEFKHPVLGRKCTYQEAFEIQARLLAKYLMGEIDKYPPLFLR
>NC_019738.1|WP_015183237.1|3862361_3862955_-|CRISPR-associated-protein-Cas4
MNEIDYIPIASLNQYAYCPHRCWRMFCAGEFTDNQYTIEGTSLHDRVHTLGESNREETWQIRAIWLKSEQYKLIGKSDLIESDSGQLYPIEYKRGRKGEWDNDELQVCAQALCLEEMTGQSVTTGYVYYAHSHQRQPVEISAQLREDAIATIQSVTTLLQTGIMPQPIYSKRCSGCSLSAQCLPQVVNKVGRYQEAD
>NC_019738.1|WP_015183238.1|3863130_3863976_-|CRISPR-associated-endoribonuclease-Cas6
MPHSLILNLLPQSPIPPQFLTGRHLHALFLTLVSSVDRKLGDYLHESKADKPFTLSPLQLIHSPLIKGGQGRNRYTLQWEHTKAIAAGTPCWWRISLLDDTLFSKLTQLWLNLNPNHPWHLGPADLHITSILGTPQSTQPWANAISYTQLYEESSESNRQIELAFCTPTAFRQSNYDCALPTRDLVFNSLIKRWNQYSGIELPKTLIEPIFPSFFDIHTEMVADSRSKFIGCVGAMSFRLLGEVEPLTIKQINALSNFALYSGVGRKTTMGMGMVRRLNNQ
>NC_019738.1|WP_015183239.1|3864010_3864619_-|hypothetical-protein
MRLLNPNQSYTFSKIFELRILPDELANEFGYNLIRKRLQLPQYQPELEHLEYLKTSIEAVLPYVDLASETSRREVLISQVLLQVVQYTKAQLRIEYPIKVTEQLQGYLDYLLRSQTELLVIEAKREDLDYGFTQLVAEMIALDQWERTPEQSVLLGAVTTGKIWQFGRLNRATKHIEQGLDSYRVPDDLEPLMRILVQSLVV
>NC_019738.1|WP_015183240.1|3864673_3866962_-|type-I-D-CRISPR-associated-helicase-Cas3'
MSNLKINLEPRSIALCPNPDLPSGLAQAFMNQTLQHQVDVYKAAETNDIILDLAPTGTGKTKAGLSVLHHNRDRNAVYIAPTNALIEQQTEAAEKFVRDAGLPHIVKAASARHIKSWRDDLVGNRSGEKLYNVLREPATIFPECGGGRPILLVTNPDIFYYATFFAYNKLDRGNIASEFYNSFSTVIFDEFHLYDAKQLVSLFFYLALSKIFNYFQYNRKVVLLTATPEPACEAALEVLKKSGVRISSSINGESQTDHLTPSQTAVNLEIRKQLDRDALINDIANEVVQRLQNYPEHNGAVILDSKDILNRLSDNLRARGLEDICGRITGSTPIAQRQKAAQKQVILATSTVDVGFNFEREVEPERQNLDWLIFSTRDRFSFWQRLGRVGRVLGKKQTDIPSEAIAYLPEQAWEQGIENLDCSGGREALKEMLESLDCMKRPFLDIYWRSEAFLEIAKPLLELETFLEELPDDHLVIKLYQTLQEVLKGKRKWEDYQKRMKVLKGAEDIARKTVKEIQKDWKYVKGGQSFVMSYLRAYCPEDYEEIKTGRASFKTIEEMIKKEQELAKDIQKYAVILKASYAPLFRFRDSLFGNVKIYDPHNLLLDEVGETNLDPIHLLRFYEFESDGDRIEVTARVDEPYNLAFSLQVSDLQDFKNTLLCKLYAFENCSIKRMHGDVVRPTPSIIEKQLIPGVIVSETAKNRWAIVRLRKQGLECYPIYVSSYDCPSPKQYTFFPSLSGILAIASAGVALKCPDEEDFWVI
>NC_019738.1|WP_015183241.1|3866954_3867746_-|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MPQLEISPTSSDANLPFQTARLIELWCAEPVFFASRELSDTYYTEGAIGNYALAYALGWARSPYRLTGKDTGRPRYLEDLTPLAEQCYILPAYPVEGGISFRFERFNALSDSYWYAMTNNRVATAREDLPLKRTGKKPNTFRPSNFPQTGRLRVIERGSRFQTLVFGNRELPEYIRIGKFTSKVRIDVVRELTITLLPVADYCCNVYLSAADIPNNLELFTFDLISIPPVSLLKNLRFHGAAWKVGDFTLPANLKFCGGRTDE
>NC_019738.1|WP_015183242.1|3867749_3868763_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSIEKLQPFLASSYENFPKGRTIGVVVLRTTQSETIFRTEGTGEPMCSEYVQAGIEHTESIPRLVMTKRKQVAPERRRGREFLRSHELLYSAPKSDSICALNTNAPCEMCIDCFLYGFAAGGEGAQKSRVWTEDAFSVLPSTELIGDRTINAIFETGTMRDEKGNASTALNTSEYIKPGVHFLDIVTLKDVTADELRYALGNILLTSRYGAVSSRIGRMENQILGIFGGIAELPSSLELVQGVYDKLIGDGKALEHPFNTEALVSVTQSVIANWTNKRGISVQLSADELDALIADVDRHWDLTEQETFLKRLDQSYAPLRKVKSEGKKKGRGEKQEE
>NC_019738.1|WP_015183243.1|3868774_3871486_-|hypothetical-protein
MSKRRWLLNGEPESLDEHYFKEIRPRLYELHATHGQHGSRKGRTLAEHLDSACQFVLTVSKIAEVPEDKRACILAATAVHDLNKLTEDGRNVKTLARDRNFLTEQLEGAGVSTLIKTDADLELIRRLIESHSGHGNTDGMRFVAEDPKIKDQIKRWAAMLIGGDLFDLGIEEEKRIRKVENELTVVFSRASRLFKVTLSEERGYLTSLLLSACEEVLHKRSLHTLAIDPDGQIFEGEAFPEEDLTVEIARQWQKRIDRVFSGNVEQLVKATKDGIKVDPQAIQQNPEAALEQVEILLTRKLSGYKSDKVAQDIEKYGRDAGEDAIAAAQSVGLTPVATADEFALSEGMKAAYLSYREAELSPKAAWDHIATHVGLSPEQRTALEPFNAQYGRSLFAVKAVARGIESVRATLQDSFQLRQTEDVDVSEDLIIAVRRLLNFSSVTDWKRFAELTAYVEANPRQRCSLGATSAQVDELISNKMPPGTKVQAFSNRLPGGMSAEPKRRADTLASLAYQLMTVGANFPKASKQDPLYLHFALPKGSSPQLQAIWRKWLHDTAATNAEGGTVTIDELQLYRDNLIAFKANKVVGFALPKRPEFTYSTVTIPVVWGDANNSVALLKSLRLALELSLAPDFGLPFILSANLEVEPEWDVFGRVEGIASALQPLLGSGIYQRQGHLSRQEQQFALTAEEVRQRLECIGKLVISVASLQKKDDCLYDLARAAQRPLDLYHILLRWVLREQDDPNLEAIWTRICEPLATLLKSLMSEEHDRVSQYLKKAAHIAEVGKLRGSSFRRTAQAEPFSEFIKAVRSRKSHMDWETIFAALVQDYHTRLDRIREHGVGATKYEQVKQFYQVLKELFEEVYHSRPERLLTDSKTLEAAYLFFLQEARQELKAQTKQVTEAK
>NC_019738.1|WP_015183244.1|3871674_3872547_+|WYL-domain-containing-protein
MPRKKETLTLSVPPGTKEQLEAIARRLNIFWGKSPSPSGLIAAIAQAKLEIGKSFTLAPDQVKALQQATKILYDSGQITEAQTLIGLLLERGNLEVSQRQALLQQASQLAEAWRIIVDQHRSNQQPFLLLYRDAQDQDLEYTVRYAEISFEEKRFYLNIWCEETEDIKDTDFPELIHNRCLRLDRIKAIVPTSGLWREEGLDFLKVYLHFKKGMIKAYELRNTDITSEVVVVGEETVRQVVRRVSNPFWLEREVLRYGGDCVVMSPESVRDRLKQKLLSLCHLYNIDTRS

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Crispr_ID: NC_019738_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_18

4023938-4024049

TypeV-U5

V-U5

Consensus_repeat	Method
GTTTCATCACCCCTCCCGCCTTGGGATGGGTTGAAAG	CRISPRCasFinder

1 spacers

c2c5_V-U5

The CRISPR arrays of NC_019738_18

>merge|NC_019738|18|4023938-4024049|CRISPRCasFinder
GTTTCATCACCCCTCCCGCCTTGGGATGGGTTGAAAGCCCGCTTCAAGGAGTGCAACATTGGGCATCCTTACCGCGTTTCATCACCCCTCCCGCCTTGGGATGGGTTGAAAG

>NC_019738|18|17|4023938-4024049|CRISPRCasFinder
GTTTCATCACCCCTCCCGCCTTGGGATGGGTTGAAAG	CCCGCTTCAAGGAGTGCAACATTGGGCATCCTTACCGC
GTTTCATCACCCCTCCCGCCTTGGGATGGGTTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015183350.1\|4014580_4016080_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|372641
NC_019738.1\|WP_041780929.1\|4018399_4018588_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369567
NC_019738.1\|WP_051055901.1\|4018749_4019040_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183365.1\|4031765_4031942_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041780932.1\|4024488_4025358_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NC_019738.1\|WP_015183349.1\|4011808_4014562_-\|Z1-domain-containing-protein	unknown	unknown	gnl\|CDD\|378453
NC_019738.1\|WP_155898020.1\|4032308_4032545_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183353.1\|4018093_4018318_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_155898019.1\|4030964_4031597_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377965
NC_019738.1\|WP_015183361.1\|4026729_4027983_+\|RNA-polymerase-sigma-factor-SigC	unknown	unknown	gnl\|CDD\|236067
NC_019738.1\|WP_015183368.1\|4033177_4035721_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019738.1\|WP_015183357.1\|4021457_4023371_+\|hypothetical-protein	c2c5_V-U5	-	gnl\|CDD\|273793
NC_019738.1\|WP_015183351.1\|4016386_4017622_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_019738.1\|WP_015183362.1\|4028078_4029227_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NC_019738.1\|WP_015183355.1\|4019036_4019345_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183367.1\|4032656_4032920_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_155898213.1\|4019474_4021316_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|226003
NC_019738.1\|WP_015183360.1\|4025413_4026325_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237771
NC_019738.1\|WP_015183363.1\|4029545_4030736_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225943
NC_019738.1\|WP_015183348.1\|4010804_4011812_-\|PD-(D/E)XK-motif-protein	unknown	unknown	gnl\|CDD\|379594

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015183350.1\|4014580_4016080_-\|ATP-binding-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	6.30485e-32
NC_019738.1\|WP_041780929.1\|4018399_4018588_-\|hypothetical-protein	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	8.8006e-14
NC_019738.1\|WP_041780932.1\|4024488_4025358_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NC_019738.1\|WP_015183349.1\|4011808_4014562_-\|Z1-domain-containing-protein	gnl\|CDD\|378453	pfam10593, Z1, Z1 domain. This uncharacterized domain was identified by Iyer and colleagues. It is found associated with a helicase domain of superfamily type II.	1.05917e-120
NC_019738.1\|WP_015183368.1\|4033177_4035721_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.62115e-22
NC_019738.1\|WP_015183360.1\|4025413_4026325_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NC_019738.1\|WP_155898019.1\|4030964_4031597_+\|hypothetical-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	0.00854823
NC_019738.1\|WP_015183361.1\|4026729_4027983_+\|RNA-polymerase-sigma-factor-SigC	gnl\|CDD\|236067	PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated.	0
NC_019738.1\|WP_015183357.1\|4021457_4023371_+\|hypothetical-protein	gnl\|CDD\|273793	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam01385, and other proteins. [Mobile and extrachromosomal element functions, Transposon functions].	0.00534939
NC_019738.1\|WP_015183351.1\|4016386_4017622_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.98807e-73
NC_019738.1\|WP_015183362.1\|4028078_4029227_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	7.79108e-20
NC_019738.1\|WP_155898213.1\|4019474_4021316_+\|DUF262-domain-containing-protein	gnl\|CDD\|226003	COG3472, COG3472, Uncharacterized conserved protein [Function unknown].	1.09422e-85
NC_019738.1\|WP_015183363.1\|4029545_4030736_-\|peptidoglycan-binding-protein	gnl\|CDD\|225943	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane].	1.51729e-19
NC_019738.1\|WP_015183348.1\|4010804_4011812_-\|PD-(D/E)XK-motif-protein	gnl\|CDD\|379594	pfam14390, DUF4420, Putative PD-(D/E)XK family member, (DUF4420). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 310 and 334 amino acids in length. Advanced homology-detection methods supported with superfamily-wide domain architecture and horizontal gene transfer analyses have established this family to be a member of the PD-(D/E)XK superfamily.	8.31498e-117

>NC_019738.1|WP_015183357.1|4021457_4023371_+|hypothetical-protein
MSIITVQCQLKATKDSLRHLWSLMVEKNTLLVNELLKQINTHPDLENWLKVGNIKAEVIEGLCDNLRTESRFQDMPGRFANAAEKLVKDIYKSWFALQEERRFRLWRKQRWFSLLRSDLELEQESGLSLEKLRTEATKILIKAQLECSREAEPDQATTDNSSALWDNLFTAYDKFKSPRLRCVIAYLLKNGCQVNKVEEDPEAYQRRRRKKEIQIERLKEQLKSRLPKGRNLSEQEWLEALEQAQGLIIDDEHLRQVQASLTRKQSPVPFSISYETSTDLRWSSNEQGRICVSFNGKGISKHTFEVFCDQRQLHWFERFYEDYKIFTQNKDQVPAGLLTLRSARLVWQEGEGEGEPWQVHRLLLHCSVETRLWTAQGTEEVRAEKIAQTQAAIDRQKAKGTQSKKLNTSLERLKTFQGFSRPSRASYKGNCSIVIGVSFGRAKPATVAVVNVETGEVLAYRDVKQLLNKPIKEGKTKKKKTQYEYLKRRQEQQRLNSHQRHNAQKNGAPCNFGESKQGEYVDRLLAKAIVEVASQYRASSIVLPDLRNIEEAAESEVRARAEQKFPGNQKLQDSYAKDYRASIHCWSYSRLAQCIELKAGKAGIATEKVHQPHGDTPQEKARDLVLAAYANRKVSVS
>NC_019738.1|WP_155898213.1|4019474_4021316_+|DUF262-domain-containing-protein
MTSISTFDITKEPLLDLLRDIQQGKIQLVDFQRSWCWDEERIERVIASVSLGFPVGAVMLLQQGNPDVKFKPRLVESLNLAHPPVPTALILDGQQRLTSLFMCLLSDQPVRIDRGKRYPPEQRWYYIDIAQALDYPHTDRRDAIWGLTVDKKLYRPGQPVIDCSTPKKEFELGLFPISQVFNFPQWRSQYCKYWHYDPQKLALIDEFEATVIKKFEHYQMGLFVLRAELPKEAVCYIFEENNKRQCELTQFDLLTSSFAAADFDLRSDWIAREKRFSSHPVLRLLKPTDFLQAIALMGNYARRVQAQQQGCHPERLPGVACNRQDVLGLELAQYQHWMEPISAAFEEVARFLHTQAIFDANDLPYPMQLVVMAPLFAILKEGIKLDWVRQHLQQWFYSGAASGIYSRSREATAGKDLLEVPKWIKGGEVPSTVKEAHLSAERLQSLVNSQGATYRAIAALLRRDGALDFVSGEPITAARYFDEKIENHHIFPQQWCKQQGIPRSRYNSIINKTPLTAKTNKFLGGKAPSEYLAKLGEQGMSRQRINEILRSHLIEPTTLHNDDFEAFFELRTQALLAKIGRAMGKSLVGESLPENGSGNGFHPKRFIDYHAPK
>NC_019738.1|WP_015183355.1|4019036_4019345_+|hypothetical-protein
MTSPRPLGQRELELIRLYANCQLGMSLRAFEAKWNVTRSQMAAICQCSLATVQRWFERGTNFSPPTRYHLRYLALADLFIEHFEEIPDRLKALLCPISNSQE
>NC_019738.1|WP_051055901.1|4018749_4019040_+|hypothetical-protein
MDELPPSVRLPTDFPDGTAIPKFLYGDRLQWKPLSDIDETDRGIVIGRFYAFASHRCQWAWKYLIFLAPESPSAQFCVADTCWEEHLEPLPLETNS
>NC_019738.1|WP_041780929.1|4018399_4018588_-|hypothetical-protein
MSKRVFLTLPDLVYEKLERWANYQGRPVANLAAYIVEKAMEEAEAEGKIPLPPKKQPPAEKG
>NC_019738.1|WP_015183353.1|4018093_4018318_-|hypothetical-protein
MIEETLSNRDWALGRLAADAEMPVERINELLEGDRASDAELQNLAQRLVKPDSEAWEEGELVDIRPAEDLKWRR
>NC_019738.1|WP_015183351.1|4016386_4017622_-|DNA-cytosine-methyltransferase
MSKKVPANFKIPTVLDIFCGAGGMSLGFQNAGCKILGGIDNNSHAIRTHHRNFPNCKFKLPALDISSLDLQKLPINPGEVDILIGGPPCQVFSRVGIGKMKSLGKKVEEDPRNFLYKYFVKCLQYYKPLFFVMENVDALVLKKDLFSKILNSLELGLPRQRESFPGYRIQHSILNASNYGVPQVRQRLFIVGIRQDLDFKFEFPKAFRRKKVSVSEAISDLIPLTPPYIPLREKSSGPKQLDTKQPYLSKPKSEYQIKMSKKIRKKKEPDGVMNHICRAHNPLDMICFAMLSPGGKYLDLPEFMRRYRWDIFDDKYKRLPWDKPAWTLTAHMGKDCLAYIHPKQNRSISVREAARLQSFPDDFVFDAPMTRMFELVGNSVPPLLAEAIAKPIAKQVQAYYASTQLSLFDAL
>NC_019738.1|WP_015183350.1|4014580_4016080_-|ATP-binding-protein
MTLATKLTEEEYDIAEPHAPAMIESLRAFGYNIQTAIADLIDNSISAGAKNVWLTFFWDGSESYVSIRDDGKGMTETELINAMRPGSRNPLEEREPDDLGRFGLGLKTASFSQCRRLTVRSRAVGDKPVTRRWDLDYVNQTGEWRLLRSAAPGSEARLAELDEITSGTVVLWECMDRLVGGTKTDDQKAQNRFLEIMEDVEKHLVMVFHRFLERRNQLQIWINGLPIEPWEPFLTKEKATQFLPEENLYIGSERVVVQPYVLPHHSKVDQQTYEKAAGPNGWNAQQGFYIYRNERMLVAGDWLGLGLQRDEHCKLARIQVDLPNSMDSDWSIDVKKSRARPPSSLRADLKRIARLTRGKAADIYRHRGKIIARQSSESYVFPWQKKVKHGKVFYSINQEHPLVKEALNVPKEHRQVIRALLRLIQETVPVQQIWLDSAEHLDQHSQPFEGVLSKEVKEVMIQVYNALIKSGLSPLEARRRLITMEPFQHFEELVASLDE
>NC_019738.1|WP_015183349.1|4011808_4014562_-|Z1-domain-containing-protein
MNDYDMARQLAQVMLKVEPTPTREIIQEKVRVVLSMLGSQRNHAVEVDEEKLVRELQSLFNTWIGIGTILDNQEDHIHWLPDRNSEIIWDFWDRYRRYLEEEKGWAPATIDSVDRLTNSVLERLEDPQRPGAWDRRGMVVGQVQSGKTANYTGLICKAVDAGYKLIIVLAGMQNSLRSQTQLRLDEGFLGFDSQVNRAFDRGNSFLGVGKIPIGKWLVANSATSSANNGDFNRRVVNSFGVHPGGKDPLLLVVKKNKSILTNLFKWALSVRGIVHEESGRKIVRDVPILIIDDEADNASINTNPLQFDESGNLEEDHEISAINKLIRQLLYSFEKSAYVGYTATPFANIFIYPDVTTPECGEDLFPRSFIINLPTPSNYIGPAQVFGLDVDQTSSLEASEGLPIIRLVDDHESWMPNKHKKDHVPDYLPWSLKKAIRAFILACAMRMARGQENEHNSMLVHVTRYANVQSEVTEQVRDELASLKRRLRYGDGNALDQVLREFEQLWTRDFLPTTQAISDTQLQPVSWEEVKPLLKQVVSKIQVKKINGTAKDVLDYWEYKNGLSVIAIGGNKLSRGLTLEGLTVSYYLRASKMYDTLMQMGRWFGYRPGYLDVCRLYTTDDLVEWYKHITIASEELRQEFDYMADSGGTPEDFGLKVRTHPQGLMITGANKMKTGTKMELSFAGSISETTIFYKDNQINQRNFEATEELLKNLGAYIERENDNYIWKKVSFAQIIDFLSGYESHPKSRVAKTSLLTQYIKAQRPLNELVSWTVILISSQRPKNRASIAGYGVGLIERQQADSSTAEYRLKKSRLLSPTDEWLDLPQPTRDAILDETRHLRELAGKPPSSSKTPNGKVIRSKRLPRNGLLLLYPLDPAEIESDFPVIGFAVSFPNSPTARRIEYQVNNVYWEQEFGEI
>NC_019738.1|WP_015183348.1|4010804_4011812_-|PD-(D/E)XK-motif-protein
MTVQDTWKLLEEDTVTVSSGYLTRRILPEVKYDVYLAIEKPTNTRLLMMRVKHSSVERGTVFPKSSSFEIRRVALPNDDNSYLTLQLVLTDPRYSDIFTTLVQDIVYHIASLADERNAVVGFITRLRRWQAFLERHNPEGLSTAAQQGLYGELWFLRQVVIPQIGSRQGVQCWTGPRGTQQDFQLERCAIEVKTTVAKQHQKLAIASERQLDDTGTGTLILLHLSLDVRQKRGESLPDIVASVRSLVENDPLAKEELETLLFEVGYLDIHTPRYEQIGYTEREVNYFKVEGDFPRIVEADLRNGVGDVRYTISVAECRRFSLPEIKVISLISGNS
>NC_019738.1|WP_041780932.1|4024488_4025358_+|lipoyl-synthase
MVVKPEWLRVKAPQWERVGNVKEILRDLALNTVCEEASCPNIGECFKAGTATFLIMGPACTRACPYCDIDFEKKPKALDPTEPTRLAEAVRRMGLNHVVITSVNRDDLPDGGISQFVQCIEGIRSVSPQTTIEVLIPDLCGNWDALETLCQAKPEVLNHNTETIPRLYRRVRPQGNYQRSLELLQRTHEVAPWIYTKSGLMVGLGETDSEIRQVMQDLRGVNCDILTIGQYLQPSQKHLNIADFITPAQFDAWREYGESLGFLQVVSSPLTRSSYHAEQVRELMQRYPR
>NC_019738.1|WP_015183360.1|4025413_4026325_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MTKIAIIGAGVWGSALSYLASQNGHEIRLWSRSSSERLEDILQGASIILSAVSMSGVNSVVTKLQRLSIHPEQILITATKGLDPATTRTPSQIWQEAFPANPVVVLSGPNLSKEIKQGLPAATAVSSTNAKAAQFVQQAFASPKFRVYTNPDPLGVELGGTLKNVMAIASGTCDGLQLGTNAKAALLTRGLAEIIRVGTDWGAQAETFYGLSGLGDLLATCNSELSRNYQVGYQLAQGKTLSEILAQLEGTAEGVNTTPVLLERANRQGVSVPITYQVYRLLKSEITPQAAVEALMLRDTKPE
>NC_019738.1|WP_015183361.1|4026729_4027983_+|RNA-polymerase-sigma-factor-SigC
MPATPFYADTEFDQELLPYSFESNGTSDDLELSVEDDLVDLESDGPEAASFSKTTNRRTTDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMRMLDLRAEFAKTSDTVIERYVHLIETHDRLVSQLGHRPSLERWAATAGVEVSDLKPILAAGKQRWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIALELEMTKEQVREVLLRVPRSVSLEIKVGKEKDTELGDLLETEETSPEEVLMREALQRDLQQLLADLTSRERDVIRMRFGLGDGHPYSLAEIGRALELSRERVRQIEAKALQKLRQPKRRNRVRDYLEALT
>NC_019738.1|WP_015183362.1|4028078_4029227_-|peptidoglycan-binding-protein
METLAYLHLALANEEPTETDYGDLTASWESLKQLSRGTIHQVWNQPKFSRCAAVSLLSFSIALGVVGMANQAFAAVQEGDQGAEVTTVQQRLQELGYFKANITGYFGTLTKDAVIQFQQAQGLAPDGIVGTNTLAALGEQSKPGAKLVRQLNSQPLPKPKPVRVSTTRNLRLGDRGSQVSALQESLAIAGFPGGANGIFDEATQKAVIRFQQAKGLAPDGIVGPQTLAALPVIGGPNPSSSRRNPSNRSKPSTTTTRTTSRDSTNRSKPSTTTTRSTSRNSTNRTTPSTTTTRSTSRNSTNRSKPSTTTNRQTPKTTTSRLNTANTNLSNSTTLALQKRLQELGFYRGEIDGIWGPQTQAAVEAAQRSYDVSAADLEKRQPN
>NC_019738.1|WP_015183363.1|4029545_4030736_-|peptidoglycan-binding-protein
METLTYFHLALDYEATTDTTELLIRDSLKLLEWWKRQKLVTQARISWLSLLVILGTLGVAGEALAQRTIQLGDRNPQVTFIQNRLQQLGYLDRSADGIFDQATQDAVIRFQRDKRLNPDGVVGAQTESALFEEFDRRTNISRRDFSVSNRSNRVLKQGDRGAEVTAVQRRLRDLGYFNGQLTGYFGRATKEAVSRFQQAYLIQPDGIVGSETQSALFGSATATSQFFQNDSLDLPPPPPLSGSPFPGRFNPIPSAQILRLGDRGPEVTNLQQELRQRGFNPGRVDGVYGLQTQEAVRQFQRTRGLLDDGIAGGETLTALGLSSQARRNRYVVVVPVLNENTLYQVRDIEGFASASLASSKRGKYVNAGSFPNRATAESRSYQLRSQGLDARVAYFP
>NC_019738.1|WP_155898019.1|4030964_4031597_+|hypothetical-protein
MSHWGRPIAVFALVLSTVGGMKATATVLSNTATGNSRLASEAIFSLKKSNIQLAQRVGECRAAARSTFIYQDRSTTNRIRALQSNEKVILAEAGGRDGWIAVSSPISGFVQTQDLKRCAEVSTLPARRNLCRQVIYEGVEGVAVREKPEISSSQVSTVFFGDRITLSNPPEFITDGMGREWTKLTDPSVGWMSNGIPARGDINLVACFQS
>NC_019738.1|WP_015183365.1|4031765_4031942_-|hypothetical-protein
MYNKNSNKDWLGAAVTAALGAGIVTSFAVSQGQHPLMALAITGFSVLVALLCSELGLI
>NC_019738.1|WP_155898020.1|4032308_4032545_+|hypothetical-protein
MESRRLALAPHNKGVKFIMNEKPSLKPWAIARQLPTLKWLIIARYRSRSDADGHLLLLRQRVPNMKFKVVFELFETTR
>NC_019738.1|WP_015183367.1|4032656_4032920_-|hypothetical-protein
MSNNNKEQLNLFNQPIEVLVEAACTVERASMLVGRSKGCVYSQLRQNQQFRRDVATGTWNVYPTGKKDGSILVNVAFAPTGNTWKVV
>NC_019738.1|WP_015183368.1|4033177_4035721_+|tetratricopeptide-repeat-protein
MSAEVLEAIFVQRQELAHNLIECIRDRILASARHHTLLTGARGIGKTHLVSLVYHRIRDMKDLQEHILIAWLSEEEWSVTSFLDLLLCVFQALQEESKNSKGTQPCLPTERVESLYELPIEDAESDGAALLKEFIGDRTLLLLVENLDDLFSGLGKDGQKQLCTFLEENNCIILATAQSYFKDVKQKNAPFYGFFRHEELKDLNTSEATQLLANIAKLKGNSALESFIQTPTGRDRIKAVHFLAGGNHRLYVIFSEFLTHQESLDQLVDAFMRTLDDLTPYYQERMRFLSPQQRKIVDFLCDRRQAVTVKEIAQRCFMTHQTASSQLKKVLEMGYVRSEPIGRESYYELREPLMRFCLEVKKQRGEPVRLFVDFLRIWYTRTDLEQRLGRLPPNAKLEREYLLHALRETEEEAEEIVEICLEDYYAYLEEENFAQALQIAQELVAIRGHIEDWLEQGYCLGVLGRIEEALASFSKAIKLDPNEPIAWFNRGIALRCLERYEEALASFNKGLELNPNESITWRNRGATLGNLGRHEDALISYDKAIELEPANANALINRGAALGNLGRYEEALVSYDKAIELDPTNANALINQGVVFSKLRRYNEALVCADKAIELDPNYGLVWNYQGWVLGQLERYDEALTSYDKAIELDPTDADGWFNRGWLLGELGSYDEGLESCDKAIELGEQSSFVFLNRAEYLLALNRWEDGIAALDKALHRFAHADEPDTGDEKAIIRNLFKSTHDASIWRSRISTLIELYDKHQVISALGQGLVRSIPELMSEMVSDKARQTWLEVWQELTSDRTQFQLPLRLLNIAVRYRETKGDKRVLLQLPIEERNLLKPLLRIDQP

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Crispr_ID: NC_019738_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_19

4084977-4085098

Orphan

Consensus_repeat	Method
CTGCCCCACTTAATGACAGCCAATCAGGATTATTCTATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_19

>merge|NC_019738|19|4084977-4085098|CRISPRCasFinder
CTGCCCCACTTAATGACAGCCAATCAGGATTATTCTATCTGGATACTGTTAAATCTCAACGTTTTTGTTCCACTTGTCCCATCTGCCCCACTTAATGACAGCCAATCAGGATTATTCTATCT

>NC_019738|19|18|4084977-4085098|CRISPRCasFinder
CTGCCCCACTTAATGACAGCCAATCAGGATTATTCTATCT	GGATACTGTTAAATCTCAACGTTTTTGTTCCACTTGTCCCAT
CTGCCCCACTTAATGACAGCCAATCAGGATTATTCTATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015183403.1\|4082244_4083852_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375554
NC_019738.1\|WP_015183407.1\|4085756_4086335_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_019738.1\|WP_015183414.1\|4096305_4097076_-\|DUF2272-domain-containing-protein	unknown	unknown	gnl\|CDD\|370785
NC_019738.1\|WP_015183413.1\|4094627_4096109_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183411.1\|4092322_4093387_-\|catalase-family-protein	unknown	unknown	gnl\|CDD\|163708
NC_019738.1\|WP_015183408.1\|4086505_4090336_-\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|215643
NC_019738.1\|WP_015183409.1\|4090481_4091354_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274027
NC_019738.1\|WP_015183402.1\|4080794_4082012_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_019738.1\|WP_015183415.1\|4097166_4098048_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270619
NC_019738.1\|WP_015183397.1\|4072586_4073540_+\|asparaginase	unknown	unknown	gnl\|CDD\|377601
NC_019738.1\|WP_015183406.1\|4085433_4085748_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NC_019738.1\|WP_015183396.1\|4072003_4072504_+\|CGLD27-family-protein	unknown	unknown	gnl\|CDD\|369086
NC_019738.1\|WP_015183401.1\|4080143_4080575_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183412.1\|4093592_4094567_-\|DUF3616-domain-containing-protein	unknown	unknown	gnl\|CDD\|372008
NC_019738.1\|WP_015183399.1\|4076900_4077803_-\|Ycf66-protein	unknown	unknown	gnl\|CDD\|369367
NC_019738.1\|WP_015183404.1\|4083876_4084866_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|133475
NC_019738.1\|WP_015183398.1\|4073840_4076744_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NC_019738.1\|WP_015183410.1\|4091396_4092263_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NC_019738.1\|WP_015183400.1\|4078084_4079533_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NC_019738.1\|WP_015183395.1\|4071577_4071997_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015183403.1\|4082244_4083852_+\|hypothetical-protein	gnl\|CDD\|375554	pfam18105, PGM1_C, PGM1 C-terminal domain. This is the C-terminal domain found in PGM1 present in Streptomyces cirratus. PGM1 is a gene product that links precursor peptides together to form the antibiotic Pheganomycin.	1.72988e-07
NC_019738.1\|WP_015183407.1\|4085756_4086335_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	5.39774e-39
NC_019738.1\|WP_015183414.1\|4096305_4097076_-\|DUF2272-domain-containing-protein	gnl\|CDD\|370785	pfam10030, DUF2272, Uncharacterized protein conserved in bacteria (DUF2272). Members of this family of hypothetical bacterial proteins have no known function. However, given its similarity to the CHAP domain it seems likely that this is an enzyme involved in cleaving peptidoglycan.	6.28833e-27
NC_019738.1\|WP_015183411.1\|4092322_4093387_-\|catalase-family-protein	gnl\|CDD\|163708	cd08152, y4iL_like, Catalase-like heme-binding proteins similar to the uncharacterized y4iL. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin.	5.77546e-116
NC_019738.1\|WP_015183408.1\|4086505_4090336_-\|magnesium-chelatase-subunit-H	gnl\|CDD\|215643	PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.	0
NC_019738.1\|WP_015183409.1\|4090481_4091354_+\|hypothetical-protein	gnl\|CDD\|274027	TIGR02196, Gene_56_protein, Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.	0.00212744
NC_019738.1\|WP_015183402.1\|4080794_4082012_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.8049e-25
NC_019738.1\|WP_015183415.1\|4097166_4098048_-\|hypothetical-protein	gnl\|CDD\|270619	cd14486, 3D_domain, 3D domain, named for 3 conserved aspartate residues, is found in mltA-like lytic transglycosylases and numerous other contexts. This family contains the 3D domain, named for its 3 conserved aspartates. It is found in conjunction with numerous other domains such as MltA (membrane-bound lytic murein transglycosylase A). These aspartates are critical active site residues of mltA-like lytic transglycosylases. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. MltA has 2 domains, separated by a large groove, where the peptidoglycan strand binds. The C-terminus has a double-psi beta barrel fold within the 3D domain, which forms the larger A domain along with the N-terminal region of Mlts, but is also found in various other domain architectures. Peptigoglycan (also known as murein) chains, the primary structural component of bacterial cells walls, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc); lytic transglycosylases (LTs) cleave this beta-1-4 bond. Typically, LTs are exolytic, releasing Metabolite 1 (GlcNAc-anhMurNAc-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala) from the ends of the PG strands. In contrast, membrane-bound lytic murein transglycosylase E (MltE) is endolytic , cleaving in the middle of PG strands, with further processing to Metabolite 1 accomplished by other LTs. In E. coli, there are six membrane- bound LTs: MltA-MltF and soluble Slt70. Slt35 is a soluble fragment cleaved from MltB. Bacterial LTs are classified in 4 families: Family 1 includes slt70 MltC-MltF, Family 2 includes MltA, Family 3 includes MltB, and family 4 of bacteriophage origin. While most LTs are related members of the lysozyme-like lytic transglycosylase family, MltA represents a distinct fold and sequence conservation.	8.82852e-22
NC_019738.1\|WP_015183406.1\|4085433_4085748_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.06287e-22
NC_019738.1\|WP_015183396.1\|4072003_4072504_+\|CGLD27-family-protein	gnl\|CDD\|369086	pfam06799, DUF1230, Protein of unknown function (DUF1230). This family consists of several hypothetical plant and photosynthetic bacterial proteins of around 160 residues in length. The function of this family is unknown although looking at the species distribution the protein may play a part in photosynthesis.	2.83335e-87
NC_019738.1\|WP_015183397.1\|4072586_4073540_+\|asparaginase	gnl\|CDD\|377601	pfam06089, Asparaginase_II, L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.	3.45018e-166
NC_019738.1\|WP_015183412.1\|4093592_4094567_-\|DUF3616-domain-containing-protein	gnl\|CDD\|372008	pfam12275, DUF3616, Protein of unknown function (DUF3616). This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.	2.08472e-07
NC_019738.1\|WP_015183399.1\|4076900_4077803_-\|Ycf66-protein	gnl\|CDD\|369367	pfam07444, Ycf66_N, Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria.	1.29998e-44
NC_019738.1\|WP_015183404.1\|4083876_4084866_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|133475	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.	7.86127e-19
NC_019738.1\|WP_015183398.1\|4073840_4076744_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_019738.1\|WP_015183410.1\|4091396_4092263_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	5.37981e-37
NC_019738.1\|WP_015183400.1\|4078084_4079533_+\|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NC_019738.1\|WP_015183395.1\|4071577_4071997_+\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	2.97737e-42

>NC_019738.1|WP_015183404.1|4083876_4084866_-|N-acetylmuramoyl-L-alanine-amidase
MKQYLVSLIFLLALWLTIIIVSPKTGRTELVSDNEFGVPHQLSPNSNIDGKNMAPAIPSRCALQPEINKQTWNQFTDIEFQPITLSRFRKLGNEVNPSTGEPINRQSPFRLFNNSQPIESIAVAHPTNYGERFLNDLYGKPAQYAPIVVIHETVGSARSAINLFRTPHPLDSQQVSYHSLIKRSGEIVYIVPPDMRAYGAGNSVFESENGRETVKTSPKHPPSVNNFAYHVSLETPRDGNNNRRRHSGYTKAQYQSLAWLIAKTGVPDYRITTHKAVDRSGQRGDPRSFNQQNFLKFLQAQPRTKEIMIDCQPPDSSVETLQNPKSKID
>NC_019738.1|WP_015183403.1|4082244_4083852_+|hypothetical-protein
MKTLNSSSSAYAEQFRHLQNQLRERWHSVDFFDQDDHDILIVPSVSMDQRELKKIEGCLHYEERLLFSLIRLRNPRTRLIYITAVPLSPIIIDYYLQLLPGIPFSHARDRLLLLSTYDGSPKPLSQKILERPRLIERIRQALRPQKSYMVCYNSSEFERELSVKVGIPLLAPDPDLLYLGTKSGSREIFAESGVPYPDGSKTMKTVSDLVEAAAELWERQPSLKRIVVKLNEGFSGEGNAILDLRKIPQVAPEKASHAERVATLHERMESMSFQAKNETWENFASRIPELGAIVEAFIEGEEKRSPSVQGYISPSGEVHILSTHDQILGGPDGQIYLGCKFPGDEAYRLLLQEMGLRVGRVLADKGAIERYGVDFVAVHQPDSPGAQWDLQAIEINLRKGGTTHPFMSLKFLTNGRYDQSTGLFYSHEGREKYYMATDNLQKERYRGLMPQDLMDIIAHHRLHFDSSTKTGNVFHLMGSLSEFGKLGVTSIGDSLQQAEDLYNQVVNVLDEETKPSLNPAQHPSYPSPPIAWGTI
>NC_019738.1|WP_015183402.1|4080794_4082012_-|acyltransferase
MHYPKVNCANQLDPFLALRGLACLVVVFYHVAPPRNFIGYQNYDFSWILFGHGYAAVLVFFCLSGYLMGKVFYSGRYTLDRTGVFNFWRNRILRIFPLYYFSIFILAVFVYTPILQISNWEYLFRLSTFTYNQSLPIEFSGSFWSLSTEFQFYLVVPLIYAGFKNRLQTQKQVIFSFGAILLLVCLLRLGFTVIFKTQEIHDNYIQYIYTPLLTNIDVFMCGFLVNAWLKCKKSNEPKPSTDVLTKPFVFNVSSHAKKIIAFTLVIILFLFTAYYYYYHGPGESIVYPAVTAIITSLFIGLFESSGNDESFHKNEKLSLDAIVRNPVRILEIGGVLSYGVYLWHQAILAKITTIITSIHPVEVFLIKLVGTLVLSSVLATITYYAIEIPAARWKLYRSSTKTNTP
>NC_019738.1|WP_015183401.1|4080143_4080575_+|hypothetical-protein
MCLAKTYDIHLELAVDVFKSQNPALIISLKNFLTVLPNPQCVEDVLMAAIYMLAKTEPEACRWILRNSYYLKPEVDLVEFTSNLALTKLQNQGFLLNQDFNFEPNRHLQVTEQAKAGLMVDNSDGDRLLLEEILQIRDSTPAL
>NC_019738.1|WP_015183400.1|4078084_4079533_+|decarboxylating-NADP(+)-dependent-phosphogluconate-dehydrogenase
MTQPSFGLIGLAVMGENLALNVERNGFPVSVYNRTAAVTEKFMEERAKGKNFTATYSIEEFVKSLQRPRKILIMVKAGAPVDAVIAQLKPFLEQGDMIIDGGNSYYPDTERRTQELEAAGLGFVGMGVSGGEEGALNGPSLMPGGTQQAYAELQPILTKIAAQVDDGPCVTYIGAGGAGHYVKMVHNGIEYGDMQLIAEAYDLLKNTLGLDHQQIHEVFTEWNTTDELNSFLIEITADIFRFIDPDTNLPLVDVIQDAAGQKGTGRWTVQSALELAVPIPTMIAAVNARIMSFYKEDRVAASKELPGPTGKYEGDTKEFINKIRDALYCSKICSYAQGMALLSKASKDLNYNLALSEISRIWKGGCIIRAGFLDKIKTAFRDDENLPNLLLAPEFKQSILDRQEAWRDVLIVANKLGIAVPAFSASLDYFDSYRRARLPQNLTQAQRDYFGAHTYERTDKPGAFHTEWTKVAEESLQTGTTD
>NC_019738.1|WP_015183399.1|4076900_4077803_-|Ycf66-protein
MLAYVLALVIGLGSLGMYLAGFFLPEVHRKEDFIWSGIGLFYALVLWVCAGRITGGVLLGQTASVALLGWFGWQTLTLRRELTSPERRTPISPEVQEKIKGFSFTGLGQKLQQQVSGLQKKQPSAAPSSSASPTTANTPKDKNKATGGQATTQVPETAPAPTDTADTPNSSKVVTIIDSRNTSTEIAIQENATTEVSPSPTPVDEPAADNAEMSASPELVRPNPPAPERVKAAQESAMSNTADSGVDAATPIEDIAPEVELAPPAEPPGDGDPMMRQNPPDGDIAIEGVPIDPENPPTLS
>NC_019738.1|WP_015183398.1|4073840_4076744_-|isoleucine--tRNA-ligase
MTEAKSYKDTVNLPQTKFDMRANAVKREPELQQFWAEHQIYEQLSQNNPGEIFILHDGPPYANGSLHMGHALNKILKDIINKYQLLQGRKVRYVPGWDCHGLPIELKVLQNMKSEERQNLTPLTLRHKARDFALKAVDEQRQGFKRYGVWGDWEHPYLTLTPEYEAAQIGVFGQMVLKGYIYRGLKPVHWSPSSQTALAEAELEYPEGHTSRSLYAAFRMTQPAAGVKEVLEPFLPDLGVAIWTTTPWTLPGNLAVAVNPELNYAVVQVGSESPYKYLIVAADLVERLSETFGTPLTVKATMPGKALEHSTYQHPLFDRQSPVVIGGDYVTTESGTGLVHTAPGHGQEDYQVGQRYGLPILSPVDDKGNFTQEAGKFAGLNVLKDANEAIIQAMEAAGSLLKEEPYLHKYPYDWRTKKPTIFRATEQWFASVEGFRDEALKAIASVKWIPAQGENRITPMVAERSDWCISRQRSWGVPIPVFYDEATNEPLLNEETIAHVQAIIAEKGSDAWWELSVEELLPENYRNNGKSYRKGTDTMDVWFDSGSSWASVLQQREELRYPADLYLEGSDQHRGWFQSSLLTSVATNGCAPYKTVLTHGFTVDEEGRKMSKSLGNGFDPMEVIEGGTIQLQKKGKKEKVTMPPYGADVLRLWVSSVDYSADIPLSTTILKQLGDVRGKIRNTARFLLGNLHDFDPEKHTVPYEELPELDRYMLHRMTEVFQEVTEAFNSYQFFRFFQTIQNFCVVDLSNFYLDIAKDRLYISSPDSSRRRSCQTVMVVALENLARAIAPVLSHLAEDIWQYLPYKTPYKSVFEAGWVKLEDKWKKPELAASWTILRTIRTEVNKVMEQARAQKMIGASLDGKVLLYVSEPELRKQLEALNPQDSLSGDRVDELRYLFLASQVELLDSPEAIQKAEFKSESDKLSVGVVKADGEKCDRCWNYSTRVGTLSEHPLLCERCVPALKGQF
>NC_019738.1|WP_015183397.1|4072586_4073540_+|asparaginase
MTRGKRTQTPVIEVRLLREGIVESTHRVQAVVCDNRGRVLSVAGNPETSTFIRSALKPFQALAVTTTGTLERYNLNDRDLAIICSSHQGKVEQVRQVFHILWRCDVDPSALQCPIPEGTKSPLQHNCSGKHAGMLAVCQQRQWPLTSYLQYHHPVQKLILSQVAELMKMPGEELIRAHDDCGAPTYFVQLRQMASLYAQLASGDNLAMERIVRAMTHHPHLISGEGAFDTELMRLSEGELVSKAGSEGVQCIGRIGEGMGIAIKVMDGAKRAKYAVAIHLLKQMGWITPSISETLSETFLKLGNYKRLEVIGELSML
>NC_019738.1|WP_015183396.1|4072003_4072504_+|CGLD27-family-protein
MMESSVSICPVPTEQQPINEYQELQESWFFRWGTLDLPNYIKKLVWVWGVSWMVAGPWASASFAPTRYTVQFLLCGAAGAGVFLALTLLRLYLGWSYVRDRLLKETIFYEESGWYDGQTWTKPPEILTRDRLIVSYQVQPILKRLKRTFGILILLVFGGSLIWNFL
>NC_019738.1|WP_015183395.1|4071577_4071997_+|ribosome-silencing-factor
MRDQLKMPSTLVSTNTQAQDMSKGLALTIAEAADDRKAGDIVILRVGDVSYLADFFVIVTGYSKAQVRAISQAIEHKVEMEWERRSLRTEGVAESSWILQDYGEVIVHILLPQEREFYNLEAFWGHAEQIEFQVSQPQQ
>NC_019738.1|WP_015183406.1|4085433_4085748_-|nucleotidyltransferase-family-protein
MTAINLKTEVSEDAIASFCQRWKITELALFGSILRDDFRPDSDVDVLVSFAPDAKWSLWDIIAMKEELETLFGREVDLVQKDCLRNPFRRYEILSTKQVIYAAQ
>NC_019738.1|WP_015183407.1|4085756_4086335_-|Uma2-family-endonuclease
MIAIPEQPQNITIEEYLEWEPQQDLRYEYVNGEVFAMTGGTIPHNDIALNLYTALRPHVRSRGCRANVSDVKVQVSPKSPYYYPDVIVSCDPQDLNARKFIQSPKLIAEVLSPGTSAKDRGEKFTCYLTIPSLQEYIMIDSEKISVERYCRGEGRMWLYYPYMAGDIITLSSLEFNCPIELLYEGVVFETEV
>NC_019738.1|WP_015183408.1|4086505_4090336_-|magnesium-chelatase-subunit-H
MKRIVLIAGFESFNADLYRKAAELATLRCPKLDIRVFSDSSLTTEPAVIEEALKDAQVFFASLIFDYDQVLWLRDRTSSIPIRLVFESALELMSLTQIGAFKIGDKPKGMPKPIKFILDKFSNGREEDKLAGYISFLKVGPKLLKYIPAKKVQDLRNWLIIYGYWNAGGVDNVASMFWTLAEKYLGLKVGEIPPPVETPNMGLLHPDSADYFESPRHYLEWYRQAKPETWHLPVVGILLYRKHVVTKQPYIPQLIRHFENAGLIPVPIFINGVEGHVAVRDWMTSTHETKQRQQGNVETPSLSPQSVEVDAIVSTIGFPLVGGPAGSMEAGRQVEVAKRILSAKNVPYFVAAPLLIQDIHSWTRKGIGGLQSVVLYALPELDGAIDPIPLGGLVGEDIYLIPERVKRLTGRIKRWIALRKTSPTEKKIAIILYGFPPGYGATGTAALLNVPRSLLNFLHSLKEQGYNVGELPEDGEELIRTVKEADEATPPYQGGAKETFLPYQGEAKEISMPSQSRKAKEILPPYQGGVRGGSTVNAQTLETWLGYLLTTRIEKQWKSLTGTGIKTYGDELQIGGIQLGNIWIGVQPPLGISGDPMRLMFERDMTPHPQYAAFYKWLQNDFKPDAVVHFGMHGTVEWLPGSPLGNTGYSWPDILLGDMPHLYIYAANNPSESILAKRRGYGVLISHNVPPYGRAGLYKELMALRDLISEYREDSEKNYALKEIICKKIVDTGLEADCPFEEAKKLGMAFTPENARMFSVHAFNDYLVKLYEYLQVVEQRLFSSGLHTLGEVPDSEGLGSYLRAYFGEELSEEVLEAIAEGRIEPLQKREYTEEGLERLKEGLKIRELLMQTSDELTNLLRGLNGEYIPPAPGGDLLRDGLGVLPTGRNIHALDPYRMPSPAAYERGREIAQKIITQHLQEQGEYPETVAVMLWGLDAIKTKGESLGILLELVGAEPVKEGTGRIVRYELKSLAEVGHPRIDVLANLSGIFRDSFVNIIELLDDLFKRAAEAEESEEQNFIRKHALALRSQGVENTSARLFSNPAGDFGSLVNDQVVDGNWESGDELGNTWQSRNSFSYGRKDKGQARPEILNQLLKTTNRIVQEIDSVEYGLTDIQEYYANTGGLKKAAEQKQGKKVSASFVESFSKDTTPRKLEDLLRLEYRTKLLNPKWADAMANQGSGGAYEISQRMTALIGWGGTVDFTDSWVYDQAADTYALDVEMAKKLREANPEAFRNVVGRMLEAHGRGFWQPSEEKLQKLRALYELTDEQLEGVTV
>NC_019738.1|WP_015183409.1|4090481_4091354_+|hypothetical-protein
MQPHRVSLVLITRTLTITLLGIAAGCSQAEPPQTTVVSDKPSTPAATTLPKSSAPAKASPASTSFATPAPQADPFPQAMDTAMGAATLTQSAICQDDWNLIANQWQRAIVLLKSLPTSHPKRALAQQKIAEYQRKLAYAKQQVVVGSKPIASSISPSSTLPASQPPTSPTQRPPASVPFQPTTPSTQSSYVSPTVALARHLQKIGAKMYTTFWCSACRRQEQQFGEEALSLINIIECDPRGKNAQPRLCRESGIRAYPTWEINGQLYEGGMPLETLANLSGYQGSRNFSN
>NC_019738.1|WP_015183410.1|4091396_4092263_+|cytochrome-c-biogenesis-protein-CcdA
MRRTKPFTPNSTKPNLSKFLLPALLFGGTVLLILAASQFNGGALSEAIDNLAFGLGDRYQQWFDKQSTNNPLVLLSLSFAGGLIASISPCILCLLPVNLSYIGTREITSRWDALIKAGSFVLGVVTMLSLFGLFSSLAGAVLIHFRGYVQVVVGAVIIVMGLMLLGIVHLPLPQTNFKLPIAGPFGVGLTFALVSSPCTSPVMFAVLAAAAATGSQIQSVLSMVSYSLGYTAIIFFASLFTGLVKRTRFLLNHSQGIVRFGSVALILIGGYYLVDGVSWFVLPIMSNS
>NC_019738.1|WP_015183411.1|4092322_4093387_-|catalase-family-protein
MAKAPLELGKEYPPQEEEAQIEQILKISKLSMKGKPHPPMSRDQHPKSHGYVQGEFIVEEDIPETMKAGVFKQSKTYPIWIRFSNGGSDRNPQTGDFVPDTVGDVRGMAIKLMHVEGEMVLPDSEHQGEQDFILMNHPTFFIRDVQGYIDFFPVVRAIKEEKIVFKPGEPPDVPAELQANFQAVAYAFPRFQKIKAKVTTSPLEIPYWSATPYKLGNQAIKFSVVPHVTGESFNPDNAADKSNYLREAMTQHLASQDACFDFKIQLQTDAVKMPIEDPTVEWDEQESPYIKVATIRIPAQDFNTEERKRLDEKQSFSPWHTLLEHQPLGGVNRARKRIYGELAKFRNDMNQSET
>NC_019738.1|WP_015183412.1|4093592_4094567_-|DUF3616-domain-containing-protein
MQKLSFAVEKELKHHGICDASGAIALDDNSFIVANDEDNFLRVYSADESGKPRTIIDINNYFPNNPEKEEVDIEAATELNGLIYWITSHGRNKKKKRKPLRHQFFANKITHPGQPILEQVGKSYTQLVFKDMFQDERLKNYVLEKAEELAPKEKGGLNIEGLTATPDGKLLIGFRNPIPRGKALILPLTNPLDLIQEKEDEVNAIFGNPIELDLGGLGIRSIEYWQVYQVYLIIAGAYDSSDEFALYWWSGNCQDTPEKIEAINLPSDFRPEAVLFYPNRKNQLQIISDDGAIIRADGKECKEIKDENHSEKYFRSLWITVSET
>NC_019738.1|WP_015183413.1|4094627_4096109_-|hypothetical-protein
MTTLQDLINGNSVLTRTQLKADKGLVREIQLRLRNLGLYPGGQWIDGDLGGNNSFSWKGLKEFCQALEPSSLPSDTVAINADIAKKLLETKQLPFILEQAENTKFILEKLTGIQTNSPAPVNIGVNDAFIARTTRNSPFAAEISNYPQYLAQKPDGTSIISYGDSITLSSGKTVTFSDYPNQGKLPIIDNTGLNFLASNISHACICIGSFSDGSSSIKTHWLGKNALEPIQLLSATKFIGVLNAICQIHANPLSIDIDNCTIESPKFRFHDLLIDMVSYREDAKGNIGRSNRIGALFKRFTKREHLEAWLKGQTGNNKLEFRGGYGKDFPSLISNPQVKDIASGTSVLSSTSEGNIGNNHVSAYDLVRIISMLGWHLHLTPNTRLPNAQWNSLESVVRAMGTDPARYVDVALETLGVVDVISEPVIISKVGFGESSFTYVAFVKFVDRRVQPAKLRTFAMALRTPNGSNELRDTNLAAAVTEIVRRIINEKLA
>NC_019738.1|WP_015183414.1|4096305_4097076_-|DUF2272-domain-containing-protein
MATLKVKTDSLNLRRSPEIKSDNIITALPLAQEVEVVNGNPSARFWEVKTIINGSTLQGFASAAFLRQPVSAAKEALISAAVKEWLRFDQGDKLEFEDPQFKYVGEYWSKIGANHDGRDRDMFWSAAFISFVARVAGYNNFKFASAHSTYIHDAVKKRRSNTNSAPFWGFNVNEHKPQLGDLVCRWRGNNAISSMDSLPNGGFTSHCDIVVEIRDTEVRTLGGNVSNSVSITTYPLNGSGFLRATGRVFGILKNNF
>NC_019738.1|WP_015183415.1|4097166_4098048_-|hypothetical-protein
MSDFRVISAELNLRSSGVVASNNIIAVLPQGQIVTRIGSESDSEKWWQVRAIVDGRTLNGFVSKSFLSTVLDQFNFPSPNSSALGKKLNLWATFYFIPLVNHDSTGIDLLDMSGNKLGVKLSDKDWCSAAVEGTVNVRTGTGETKTFNFAGTGAVEQVNCRPFFPSLATISKTNKTRFGLSKGIFGEGVNGLKLVPYRSIAVDRTEIAIGTVIYIPAARGVKVIVPSGESTFHDGYFFAADVGGAIKDNHIDVFLGVANKNPFPFVKSNESGTFDAFIVNDASITKELKNAHS

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Crispr_ID: NC_019738_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_20

4158003-4158281

Orphan

Consensus_repeat	Method
GAAGACCCCTACGGTGACCCAGCNGAT	CRT

4 spacers

The CRISPR arrays of NC_019738_20

>merge|NC_019738|20|4158003-4158281|CRT
GAAGACCCCTACGGTGACCCAGCAGATTACGGTTCCTACGGTAATGTCCGTCCTGCCAGTGAAGACCCCTACGGTGACCCAGCAGATGGTATGTATGGGCAATTCGGAGATGTTCGCCCTGCTAGCGAAGACCCCTACGGTGACCCAGCCGATTACAGTTCCTACGGTAATGTTCGCCCCGCTAGTGAAGACCCCTACGGTGACCCAGCCGATGGTATTTATGAGCAATTCGGAGATGTTCGCCCTGCTAGCGAAGACCCCTACGGTGACCCAGCCGAT

>NC_019738|20|5|4158003-4158281|CRT
GAAGACCCCTACGGTGACCCAGCAGAT	TACGGTTCCTACGGTAATGTCCGTCCTGCCAGT
GAAGACCCCTACGGTGACCCAGCAGAT	GGTATGTATGGGCAATTCGGAGATGTTCGCCCTGCTAGC
GAAGACCCCTACGGTGACCCAGCCGAT	TACAGTTCCTACGGTAATGTTCGCCCCGCTAGT
GAAGACCCCTACGGTGACCCAGCCGAT	GGTATTTATGAGCAATTCGGAGATGTTCGCCCTGCTAGC
GAAGACCCCTACGGTGACCCAGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015183456.1\|4153400_4155167_-\|peptidase-S8	unknown	unknown	gnl\|CDD\|173810
NC_019738.1\|WP_015183461.1\|4158505_4160479_-\|sulfite-reductase,-ferredoxin-dependent	unknown	unknown	gnl\|CDD\|131097
NC_019738.1\|WP_015183453.1\|4149272_4149992_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183458.1\|4155343_4155778_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183451.1\|4144170_4146399_+\|caspase-family-protein	unknown	unknown	gnl\|CDD\|379557
NC_019738.1\|WP_015183452.1\|4146794_4148888_-\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NC_019738.1\|WP_015183464.1\|4164378_4166187_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_019738.1\|WP_015183467.1\|4169824_4170232_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183462.1\|4161031_4161232_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183455.1\|4153179_4153404_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183450.1\|4141645_4143508_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|224271
NC_019738.1\|WP_015183460.1\|4157297_4157807_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183465.1\|4166514_4168353_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_019738.1\|WP_015183463.1\|4161416_4161956_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379226
NC_019738.1\|WP_015183466.1\|4168689_4169820_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_019738.1\|WP_041780955.1\|4150051_4152532_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_019738.1\|WP_015180559.1\|4162563_4163871_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019738.1\|WP_015183469.1\|4171792_4172788_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_019738.1\|WP_015183459.1\|4156089_4156623_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183468.1\|4170356_4171493_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270308

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015183456.1\|4153400_4155167_-\|peptidase-S8	gnl\|CDD\|173810	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	2.56649e-133
NC_019738.1\|WP_015183450.1\|4141645_4143508_+\|PAS-domain-containing-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	9.76028e-72
NC_019738.1\|WP_015180559.1\|4162563_4163871_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.13897e-11
NC_019738.1\|WP_015183451.1\|4144170_4146399_+\|caspase-family-protein	gnl\|CDD\|379557	pfam14326, DUF4384, Domain of unknown function (DUF4384). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	1.42336e-19
NC_019738.1\|WP_015183452.1\|4146794_4148888_-\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NC_019738.1\|WP_015183464.1\|4164378_4166187_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_019738.1\|WP_015183466.1\|4168689_4169820_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.44901e-160
NC_019738.1\|WP_015183465.1\|4166514_4168353_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_019738.1\|WP_015183469.1\|4171792_4172788_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.22559e-77
NC_019738.1\|WP_015183463.1\|4161416_4161956_-\|hypothetical-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	0.00643461
NC_019738.1\|WP_041780955.1\|4150051_4152532_-\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.55116e-21
NC_019738.1\|WP_015183461.1\|4158505_4160479_-\|sulfite-reductase,-ferredoxin-dependent	gnl\|CDD\|131097	TIGR02042, Sulfite_reductase, ferredoxin-sulfite reductase. Distantly related to the iron-sulfur hemoprotein of sulfite reductase (NADPH) found in Proteobacteria and Eubacteria, sulfite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulfite to sulfide. [Central intermediary metabolism, Sulfur metabolism].	0
NC_019738.1\|WP_015183468.1\|4170356_4171493_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.89303e-132

>NC_019738.1|WP_015183460.1|4157297_4157807_+|hypothetical-protein
MNTIYPKPRKYLRPTALLLSVLLGVPFFAGCASDTRTTPPPPVDDTRSGAQTYPAPGNQPQARTGNPPQAKKGISTGQKVAILAGAAALYYLYNRHKNKQEQGAQGKYYLSKNGRVYYRDAQNRAHWVTPPPGGIQVPESEAQQYRDFQGYNNQPTGRDLTDLVPSGAQ
>NC_019738.1|WP_015183459.1|4156089_4156623_+|hypothetical-protein
MNVQHHKSSIKKIFSLVGVATASAFLGLPGFAQVTPNAGDMNQQLVAQGMPENELDNVCGGYEGNATSGGGYYCARGRMNGQSSNWGGDTQYRRTAPQSSSLREGNSTTGAGYPGTGVRPQGVDNNMNQDSNNPAGNFQNQTPSQEGSNMDNGGSTTGAGYPGSGVRPQGVDNNMNR
>NC_019738.1|WP_015183458.1|4155343_4155778_+|hypothetical-protein
MERGLLWLPLLAVFIWLAWSGWNEYQKVEAYRHWASQFERAKYDIYAVLGQKGSDLTWGKPTRQGPVEIETFSLQDVQAIHLLVDNQTADLDKPPQKGRAIALEFLRPEPAASIKVPFTEVPLAAEWGKFLQQQLKRLRLEPAE
>NC_019738.1|WP_015183456.1|4153400_4155167_-|peptidase-S8
MRKFLIACLFILGLLFAPFNFKGLANQGEYESIVLDFREDVPAAEIAAKVNLLAAQYGLEPRLNSEFSAPDHVYIARGDRQTISKLKKLGFGKLTEFIEPNYIYKAFDVPNDPDYGQQWNLRQINVESAWDDTKGSGVTVAVIDTGISPVPDLKDTQFVKGYDFVNDQIEAFDDNGHGTHVAGTVAQSTNNNYGVAGIAYEATLMPLKVLSGSGGGTVADIAESIRFAADNGADVINMSLGGGGESQLMKEAIDYAHQKGVVIIAAAGNSNDNSASYPARYPHVIGVSALDSAGVKAPYSNFGAGVDISAPGGSEVGKILQETIDPQTGEPIFAGLQGTSMASPHVAGVAALIKAAGIQEPDEIADVLTKSARVIQQDPLNHFGAGHLDAAAAVKLAIKGQITFKDFFRWLRDNGYLNPRFWIDGGTVMLLPKIAMVLGSYLLAWFLRNYLPFWGLSLTTGLVAGSSGLFVLRGLYIFDLPQWPFRVMGSSIPELGSAIQGSSMLNPIFASVLIPFILVTLLLGHKEWKWVAIGSALGVASCLAVSAVMSPSLLWLGSGVVARVFLVANALLCFGLAYLASKGEMQKA
>NC_019738.1|WP_015183455.1|4153179_4153404_-|hypothetical-protein
MSISVKGVIERKGLGTGTWALVSDSGETYELKDAPDELKKSDLKVKVEGQVRDDVMTIAMIGPVLEVKSFKVLD
>NC_019738.1|WP_041780955.1|4150051_4152532_-|CHAT-domain-containing-protein
MAQEFHISVTPLGEDEYLVRIERVAPGVPLAEEQVHWPVEHWLSQARQLMNDPLLGLLQGGGAFTEDVFFLSEWDEPANPSTQNLVELGHELYNALFQGSLRDSWMMAQAIAQNQRQVLRLRLGLKGTRLPRLPWEVMHAGDRPLATGIDVAFSRYQLGPGLWNPTQRFLSSPNQPLKILMVISGPSDQEMLELAQEASHLQEELQRRTPNGPPAIQLTVLEQPGREQLTQALEQGQYQVFHYAGHSNLGDSGGDVYLVSNRTGLTETLNGDDLAGLLVNNGVQLAVFNSCRGAYTATSKAIENGKERNLAEALVKRGIPGVLAMAERIPDEVALTLTRLLYRNLNQGYPIDLSLSRARQGLISAYGSNQLYWALPVLYLHPEFDGFLSNDTQEKREELFVIPELPDTPLVPKTEDIIFTRSARPPLPPDDEDELDSFFLDLKGSDAPDEENPADFIRGLLNQIEPSSPPTPEVVRPHIEADQGAQNRSEAVSWELPAHASDPTPTAQGESITASSGATGASSAQPDTRTSTTQAVEQRPSQGVNRGWQKLRGIPRVWLVIGAMGALAIALLGFLIFQNRNPQIGDMTQQNPSTPTLPTDGTKSSLAKLDTPNVTAIAIEQFSQENIPTGLNAVEELLNREALPPAEAALAAVPVTKLDDPAVSFLRGRLAWQSLKKEQSERGSKNYDLSDARKYWEMARKGNPKSVPYLAALGFAYYTEGNYGRANNAWFEALQLKTASQSGGNVPQATPDQETLTIYAGLALGLRQEAQKQPTAQRASLLSKSLNMRQYVLSNDPVNFQPDALSQNWLWTEKAIQDWRSLLAAK
>NC_019738.1|WP_015183453.1|4149272_4149992_+|hypothetical-protein
MLNISSNPSELQHRLQAFKQLLYKHPFAFCGGLWVLLVFLAGVATLGLFNPGPIEEGGSRPLPPHTTFEKVTGKPPSFKIWKSSKPEPTPVMTQKDSTPEQVPFTSVEESTPKQDLPLSLLGAIALGCAGGSLLLTQILKYSAESYEKSRRLKPVGTIRKKRRNPPPKSRPVPRPPQSVNSKPKSQDINPSIVTQDRSLAQITVLPPEQSHPLDGGKESLADMMDLRKRYSLSSLMRDK
>NC_019738.1|WP_015183452.1|4146794_4148888_-|biosynthetic-arginine-decarboxylase
MGVKLTPKTGNILEESANEDQTRLKIKPTAGVEPNPPHPLSPTKSWTIEHSEKLYRIQGWGEPYFSINAAGHVTVSPKGDRGGSLDLFELVESLRQRNLGLPLLIRFSDILEDRIERLNACFAKAIARYKYPGTYQGVFPVKCNQQRHLVEDLVRFGQPYQFGLEAGSKPELMIALATLKTPNSLLICNGYKDQEYIETALLAIRIGHKPVIVLEQLEEVPLVIEAARRLGIEPILGVRAKLTTKGTGRWGESAGDRAKFGLTLPEILNCVEQLGAAGILHSLQLLHFHIGSQISAIGVIKDAIREASQIYVELSALGANMHYLDVGGGLAIDYDGSKTNFYASKNYNMQNYANDIVAEVKEACEARQLGVPILVSESGRAIASHQSVLVFDVLGTSDVPSETPVPLQEKEHLIIRNLWETYSNINVENYQEAYHDALQFLEEAKSLFSLGYLSLTQRARAEQLYWVCCHKILEIARTQDYVPDDLEDLEKTMASIYYVNLSVFQSVPDSWAIDQLFPILPIHRLDEEPTRRGILADLTCDSDGKIAQFIDLRDVKSVLELHPLREVGERDSSPIPNSPNPKSPIQNRQSKEPYYLGLFLAGAYQEIMGNLHNLFGDTNAVHINLTPRGYEIEHVVKGDTMKEVLGYVQYDSEDLVESIRRSTEQALQENRITLEESQLLLQNYEKSLSRYTYLNCQ
>NC_019738.1|WP_015183451.1|4144170_4146399_+|caspase-family-protein
MPRIKRRHFLQSTASLLATLGLSQLDLQRAGDRYGRALAQGTPRKLALLVGINEYPETGEYSALRGCITDVDLQRHLLISRFGFNPKNILTLTDKQATRQGILTAFEEHLIKQAQPGDVVVYHFSGHGSQVRDPDCDAPNCLNSTFVPVDSVAATGTRGSGDVVQDIMGHTLFLLMYALKTENVTAVLDSCHSGGGTRGNLQVRSLRGGDQLQIANTEREYQQRLLSMVNLAPDEFKRLRRQGVAKGVVIASTKPEQVAADAAFNDIYAGAFTYIMTQYLWQQTRSETLGSVVVNVARSTKKASFTGQDPLAEVKPNSDYKQRNVYFVEQQTPPAEAVILGVEGDLAQLWLGGVNPKSLQAFEQGTIFSIIDSQGNPQGQVVLESRQAETLIGRGKLLGKAQPGAFLQEQVRGVANDVTLCIGIDPSLGNDATAAKQALQSIRRIEAIPLQQKEVHYIFGRMTDAYSRQLQQQRVTKLPPVGSVGLFTPGLELIPDSFGAADESVSAATNRLQAKFKSLLAAHLVKLILNSDSSRLNVTAVMNREDQKEVLATAFTVRGSVGQASFPNRPTQPLPADASKLPLGTRVQFRINNKESRDLYLSILVIDPTGEISVIFPNQWSATDDVMRVKAGQTIQIPDPSKGDSFALVAQEPKGVAEALIIASATPMSKALQGLREVATRGGNTRGFLTPNEPTEVIGSFLDDIDRGTRGSRSSNTAQPSQGVKSVDTSQMAAMSITFEVI
>NC_019738.1|WP_015183450.1|4141645_4143508_+|PAS-domain-containing-protein
MAITPDDPTFEVLLHYLKQTRGFDFTGYKRPSLMRLAKKRMQIVGAESFTQYLDYLEANPLELNHLFDALLLNVTTFFRDLPAWNYLTQEIIPRILEMKPDNELIRVWTAGCASGEEAYTIAIILAEILGEEAFRSRVKIYATDLDEDAITYGRLATYTARQLGNIPEPLREKYFEVTRSAYIFRHDLRRCVIFGRNNLVQDAPIGHLDLLICRNTLMYFNAETQSRVLARFHFALKDRGFLFVGKAEMLLTHANLFTPVNLKYRIFAKLSHVTLRDRQFVLAEAGNTEIGNHTLRNIRLRDEAIESLPIAQIVVDIHGKLAIANRQARIWFNISNSDLERPLQDLEVSYRPAELRSLIQKAYTERRPIQLNHVEFSKVGESNPIWLDIEILPLMDTQGELLGVLVVFQDATRYNQLQQELSRSTQEVETAYEELQSANEELETTNEELQSTNEELETTNEELQSTNEELETINEELQSSNEELQATNDELRARTDELNCANAFLESILTSLQMGMVVLNNRLSVQLWNGEAVNLWGIPASEVEGYFFFDLDLGLPLEQLREPVRECQTGVSNYRDMVLDAINRRGRAIRCRVICTPLIVAAQQQGIILLMEDVSNKQQP
>NC_019738.1|WP_015183461.1|4158505_4160479_-|sulfite-reductase,-ferredoxin-dependent
MVNSPTSPSVQKRSKNEALKERSNYLREPVATELLQDTTRFTEDAIQILKFHGSYQQDNRDNRAKGQEKDYQFMLRTRSPGGFIPPELYLTLDRLSQEYGNHTLRATTRQGFQIHGILKKNLKTVFASIIRSMGSTLGACGDLNRNIMAPPAPYKNRPEYQYAWEYANHIADLLTPQTGAYYELWLDGEKVISAEEAPEVKAARERNLNGTNLPDPEEPIYGQHYMPRKFKIAVTVPGDNSIDLYTQDVSLVVITNKKGKLEGFNVLAGGGLGRTHNKEDTFVRMADAIGYVSKEDVYDLVKAIVATQRDYGDRANRRHARMKYLLQDWGVEKFTAKVEEYFGKKIAPYKPLPAFKYQDYLGWNEQGDGKLFLGISVENGRVKDEGTFRLKSALREIVQQYSLPMRLTGNHNIILYDIEPSQQLAIEQLLEQHGIQISPEGIEPLVRYSMACPALPTCGLAITESERAIPGILERIRALLDKVGLENEHFVVRMTGCPNGCARPYMAELGFVGSAPESYQVWLGGSPDQTRLAQAYVDRMPIHELELFLEPIFVFFKKERKAGEKFGDFCDRVGFDAIRQYTVEYESPKLNSQSDTGLVNEVIKPEPSAIPVASGKTRYRVGVRDELYKRLKNVATKQGKTMTELAAEALEAYLKDI
>NC_019738.1|WP_015183462.1|4161031_4161232_+|hypothetical-protein
MMHAFYHFPSILEEIYSESLCSRQISRTQLHQLQSLSHEAALNSQQNRLVKRLIHASRRGWLNVID
>NC_019738.1|WP_015183463.1|4161416_4161956_-|hypothetical-protein
MKLTLKSIVTFAALAVTVIAPTVLSASRASADPVKGTKADYIGAGVSAGVTNGGSATGGDAATLGGNIQGRLTTQKAPVSVRGAVLFSDDTSAIMPIVTYDVPIAKNTNVYVGGGYSFVEKQGQATPLGNKNAPVVTVGAESQLGQNLVIYGDTKWGVDAYQNSPADAVSFQAGAGFKF
>NC_019738.1|WP_015180559.1|4162563_4163871_-|transposase
MNYKQLQEFRQQVYDLINFAQDATFELTDAVLTTRNVYSLAEFSLSPFFRRKWPSIYEALQDCRPNRNKLMRLYIKQILVQERPVLAVDHTAWARVHSPTLQDRTYCHQPSAIASNKPISIGQGYSTIAWIPEHKGSWALPLRHERITSWENPISKAAWQIKQACKYLPLRPMILLDSEYGNASLLNQTAQIEADFLMRIRSNRCLYSAPPAYTGKGRPRKHGQKFKLNDSSTWWEATEMVEVEDSRFGQLRVRMWQDLHFSGSASIAMQLILVERILPEQSHSKSQPLWLVWVGQEMLPLPEIWRQYLRRFAVDHWYRFLKQRLHWTVPQLSTPCQCERWSDLMPILTWELWLARDLVAQHHLPWQKPLSNLTPGRVAESFALLLPEIGTPAVSPKPRGKSPGWQAGNKRTKKTRYPVVKKGKTPHKKRTKKAA
>NC_019738.1|WP_015183464.1|4164378_4166187_-|penicillin-binding-protein-2
MSVFQPSSGGRKPTPRTVGRNYQSIFVMLFVSAFLVGGMGSRLAYLQLMQGSRNRQLAENNRIRLIPKQPVRGNIFDRKGRVLASSRLSYAVYLWPIALKKGDWPQTRQRLSKTLNIPEADIQKRVERAGFNSPSLIRIERDISPAQITALAEYSNQLEGVEVDIEAVRNYPNGDLAAHVLGYTGELNDEELAKRKSEGYRMGDIVGQMGVEQAFEDKLRGEWGGQQVEVDGAGQVLRVLGQKKAKSGKDVQLTLDLKVQKAAEAALGNRKGAIVALDPNNGAVLAMVSRPTFDPNIFSTRITAATWKQLQGKGNPFVNRSMRGFPPASTFKVVTATAGMESGKYAPSTILPTYAALQVGNTAFGEWNKAGFGPIGFVRALAMSSNTFFGQIGRGAGGPTLIEWSRKYGFGQKTGIELSEEAQGLVADAAWKQKVYKWDWTVGDTVNMSIGQGFTQATPLQVAVMFATPANGGYRVKPHLLKDNEESKSWRKSLNIKPTTIKVIRQGLREVISAGTGKALDVPYMPPIAGKSGTAEAPPGKPHAWFGAYAPADKPEIVVVAFAEHSGGGGSKVAAPMTLQVLEAYFNKKPPQPSKDKQARPN
>NC_019738.1|WP_015183465.1|4166514_4168353_-|penicillin-binding-protein-2
MTVNQPPSLGRKPTPRTVGRNYQSIFVMLFVSIFLVGGMSARLVYLQLLEGNRNQQLADNNRIRLIPKQPVRGNIFDRKGRVLASSRLSHAVYIWPLARKKAEWPETLKLVSKILNIPEGEIEKRLEKAGYNSPSLLRIARGITPAQITAMEEYSNQLEGVEVDIEAVRDYPNGAMAAHVLGYTGELNDEELAKRKSEGYRMGDIVGQMGVEEAFESQLRGEWGGQQVEVDGAGHVLRVLGQKKAKSGKDVQLTLDLDVQKAAEKALGEQKGAIVALNPNTGAVLAMVSRPTFDPNIFSTRITAATWKQLQGKGNPFVNRSMRGFPPASTFKVVTATAGMESGKYSPSTILPTFAALQVGGTAFGEWNHAGFGSIGFVRALAMSSNTFFGQIGRGAGGPALIEWARKYGFGQKTGIELSEEAQGLVADAAWKQKVYKWDWTVGDTVNMSIGQGFTQATPLQVAVMFAVPANGGYRVKPHLLKDNEESKSWRQSLNIKPPTLKVIRQGLREVVAAGTGKALNVPELPPSAGKSGTAEAPPGKSHAWFGAYAPADKPEIVVLAFAEHSGGGGGSVAGPMVREVMEAYFKHNNPGLIPKPKSEAPTSKPKPAARN
>NC_019738.1|WP_015183466.1|4168689_4169820_+|ABC-transporter-ATP-binding-protein
MSQTSVKEQRAPDTATELDVELRKVFKVFAGETAVRGVDLQIHRGEFFSILGPSGCGKTTTLRLVAGFETPSAGEVLIQGQLMNHIPPHRRPVNTVFQSYALFNHLRVSENIAFGLRLKKLKSADVEERVKQALKQVKMEAYANRFPGQLSGGQQQRVALARALVNRPAVLLLDEPLGALDLKLRKEMQVELSNLHQELGLTFIMVTHDQEEALSLSDRIAVMRGGKIEQVGSPTEIYERPRTTFVADFIGDTNLFKGRIESSDASSLQILTPTGLKIVVQSKPPSHAAAQAQEMVVSIRPEKIRLSLSPPESTINCFEGYLQHVMYLGTHVHYVVELESGDRITVRLPNVTHKLPDTNTPVYARWAPADCLALEE
>NC_019738.1|WP_015183467.1|4169824_4170232_+|hypothetical-protein
MSITGMSSFLQELESYCFSVAIVTFLDSNREPMVITLTRQGQQVTYGDDWGIKELFISKLLWDCNPSGSLILRSFTQEIDEFTQLPIKELRGYILQGDGDDLAFEKLSPKAMFACHNTDAQTDEPLALEQSVRYC
>NC_019738.1|WP_015183468.1|4170356_4171493_+|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MPTPDQDTFLKRPNRRQFLKLAASATLSSTALSGCGWTLAEVRPPATEQGSAKASKDVYIYTWAGYTDQDLLKRFEKETGFRAVADVFDSNEAMLARLQAGGGGGYSIIYPSDYMVSKMSEMGLLTQLDASRITGLNQLFPKFRNPVSDPGNQYSVPVSWGTTGLIYNPKKLKQAPEDWSYLWENQQQLSKRMTLLNDVREVMGATLKMLGYSYNSTDPQHIQQAYQKLMDLKSNLASFTSDAWRPQVLSGDLSVAMCYSADANEVMGENESLEYVVPKSGSSLWMDTLAIPKSAPNVEGAYAWINFMLQPDVAAEVCKRLSFATPNQEAFKLLPPDVKSNQSLFPPEAILETCESIAPVPESISAVYDGYWTKLASA
>NC_019738.1|WP_015183469.1|4171792_4172788_+|ABC-transporter-permease
MDGTESVVLSEKKRPKGKWVEPFVLLSPAGIWLFLLLVLPTLVIFELSLVPNIKPGMVVNPSGIDNYLKVFSSTNLLVMGRSLFFAIGSTLICLILGFPVAYWIAQMTPKRWRNLLLLGFILPLWTSSLLRSYAWITILRPTGVLNTFLLEPLAPFLNPLLGGLNQLLESFNLVLENLSLPTLPLLQLLPWNILNEWPAVLIGMAYSYLPYMVLILYASLEKLDKRLLEASADLGANPIQTFWKVTVPQTLPGIAAGSLLVFISGLGDFVDPELLGGASSMTGARLIYNQFLGPTPNWGFGSALSMLLIVAVSMAIALLIKYGDRDAASQR

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Crispr_ID: NC_019738_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_21

4580266-4580523

Orphan

Consensus_repeat	Method
GTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG	CRT
GTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG	PILER-CR

3 spacers

The CRISPR arrays of NC_019738_21

>merge|NC_019738|21|4580266-4580523|CRT,PILER-CR
ATTTCTATTCAATTAGGTTTCCCAGCGAGTGGGAAGCCAAAGCGCGATTGGTGACCCATACCACAATAATGAGTTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAGCAAAGAACAAGCTGACCAAATCCGTGCAGATCAAGCTGCGTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAGGAGCAACTCAATAAACGCGATTTGTTGGTAATTGATGCAGTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG

>NC_019738|21|6|4580266-4580523|CRT
ATTTCTATTCAATTAGGTTTCCCAGCGAGTGGGAAG	CCAAAGCGCGATTGGTGACCCATACCACAATAATGA
GTTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAG	CAAAGAACAAGCTGACCAAATCCGTGCAGATCAAGCTGC
GTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG	GAGCAACTCAATAAACGCGATTTGTTGGTAATTGATGCA
GTTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG

>NC_019738|21|6|4580267-4580523|PILER-CR
TTTCTATTCAATTAGGTTTCCCAGCGAGTGGGAAGC	CAAAGCGCGATTGGTGACCCATACCACAATAATGAG
TTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAGC	AAAGAACAAGCTGACCAAATCCGTGCAGATCAAGCTGCG
TTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAGG	AGCAACTCAATAAACGCGATTTGTTGGTAATTGATGCAG
TTTCCATTCAATTAGTTTTCCCAGCGAGTGGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_155898228.1\|4585834_4587331_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NC_019738.1\|WP_041781011.1\|4585153_4585756_-\|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT	unknown	unknown	gnl\|CDD\|180961
NC_019738.1\|WP_155898045.1\|4570353_4571271_-\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|368580
NC_019738.1\|WP_015183793.1\|4583990_4584896_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|178539
NC_019738.1\|WP_015180904.1\|4577343_4578255_+\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372577
NC_019738.1\|WP_015183790.1\|4578981_4580103_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NC_019738.1\|WP_015183796.1\|4587723_4587993_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NC_019738.1\|WP_015183785.1\|4571419_4572148_-\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|368580
NC_019738.1\|WP_015183791.1\|4582633_4583689_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|319862
NC_019738.1\|WP_015183799.1\|4592289_4594116_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019738.1\|WP_015183786.1\|4572326_4572746_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015183781.1\|4560495_4562685_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_019738.1\|WP_155898046.1\|4580827_4581466_-\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NC_019738.1\|WP_015183788.1\|4573998_4577130_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|225115
NC_019738.1\|WP_015183782.1\|4562901_4564314_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235059
NC_019738.1\|WP_015180904.1\|4581650_4582562_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372577
NC_019738.1\|WP_015183783.1\|4564468_4569949_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NC_019738.1\|WP_015183787.1\|4572910_4573417_-\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_019738.1\|WP_015183798.1\|4589631_4592073_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NC_019738.1\|WP_015183797.1\|4588051_4589143_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_155898228.1\|4585834_4587331_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	1.14575e-149
NC_019738.1\|WP_041781011.1\|4585153_4585756_-\|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT	gnl\|CDD\|180961	PRK07402, PRK07402, precorrin-6Y C5,15-methyltransferase subunit CbiT.	8.51864e-130
NC_019738.1\|WP_155898045.1\|4570353_4571271_-\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	4.12876e-06
NC_019738.1\|WP_015183793.1\|4583990_4584896_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|178539	PLN02953, PLN02953, phosphatidate cytidylyltransferase.	7.02192e-60
NC_019738.1\|WP_015180904.1\|4577343_4578255_+\|IS5/IS1182-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.99054e-40
NC_019738.1\|WP_015183790.1\|4578981_4580103_-\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	3.86367e-16
NC_019738.1\|WP_015183796.1\|4587723_4587993_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	2.33915e-06
NC_019738.1\|WP_015183785.1\|4571419_4572148_-\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	5.19074e-07
NC_019738.1\|WP_015183791.1\|4582633_4583689_+\|GUN4-domain-containing-protein	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	1.53962e-43
NC_019738.1\|WP_015183799.1\|4592289_4594116_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.58993e-14
NC_019738.1\|WP_015183781.1\|4560495_4562685_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_019738.1\|WP_155898046.1\|4580827_4581466_-\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	1.50966e-11
NC_019738.1\|WP_015183788.1\|4573998_4577130_+\|PAS-domain-S-box-protein	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	3.65104e-41
NC_019738.1\|WP_015183782.1\|4562901_4564314_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235059	PRK02705, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
NC_019738.1\|WP_015180904.1\|4581650_4582562_-\|IS5/IS1182-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.99054e-40
NC_019738.1\|WP_015183783.1\|4564468_4569949_-\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	4.66061e-22
NC_019738.1\|WP_015183787.1\|4572910_4573417_-\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	1.65764e-19
NC_019738.1\|WP_015183798.1\|4589631_4592073_+\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NC_019738.1\|WP_015183797.1\|4588051_4589143_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0

>NC_019738.1|WP_015183790.1|4578981_4580103_-|DUF4351-domain-containing-protein
MIDHDRLFKELLSTFFVEFIELFLPDVIAYLEPDSVAFLDKEVFTDVTAGERYEADLLVQAQFRGELSCFLIHVENQAKAQANFGKRMFRYFARLSEKYDLPIYPVVVFSYDQPKLAAASQFHVEFPDFRVLEFNYRVIQLNRLNWRDYLGQANPVASALMAKMQIAPADRAKVKAQCLRLLVTLRLDPARMQLISGFVDTYLDLTESEEQAFQDELGRIELEEKERVMEIVTSWMRTGIEQGRREGIEEGIRLGKVSLVMRLLHRRLGELDAKLEARIGDLGVSQLDVLSEALLDFSTVEDLIYWLDSQDKRGLISIIWRQLKRKFGQLNPEVEAQVRGLELASLEELSEALLDFENVEDLKVWLRNRDVIR
>NC_019738.1|WP_015180904.1|4577343_4578255_+|IS5/IS1182-family-transposase
MSNIPEYLEKNQQESKRLIGLEYEQLQQLIAAAELLHQQKDIEIEQRKVRINKAGGGRRPKLSVKDQIILTLVYLHPEPTFQMLGVQFGVSESTANDIFHYWSELLRELLPASLLEQVKKNPGEYKWVQEILAELELIVDSCEQPIPRPKDYQEQKKFYSGKKKNHTLKNQLIVTPNGQEIVDVIVGKPGPTSDINIWREGQSKLAPTQKFKGDKGYIGEVQIETPQKKPRARELSQEEKQKNREKASERIFVEHVIRLLKIFRVAQERFRLRAKSYQRIILLVCGLVRLRIGTLFINSSVCD
>NC_019738.1|WP_015183788.1|4573998_4577130_+|PAS-domain-S-box-protein
MTNARGHNVEPSTSWQTDGVAVHTYPNLLQGVAQATNQLLTTDDLATAINQTLAILGQVTHVDRVYIFEIHPHTETAEPAMSQWCEWARETVTAEIDNPQLQNLPFASVGMSRWYGALSDGHSCHGLVRDLSLPERQLLEPQGILSILVVPIPVNGNLWGFIGFDDCHSEHQWSPDESAVLMTMAAMIGSCITHRQTADALKQSQLRLEQITANVPGMIFQFLQRLDGSRSVLYASSGCQEIYELEPEAIQADFQMLSNLIHPDDREAYERSVANSAAKGEPWNWEGRIITPSGKLKWVQGTSRLEQQRNGDLFWDGVLVDITDRKQAEGGLRASEARLQSFFDATFEAVMIHDRGLILDVNSATEALLGYSKAELVNQSVLKITAPCSQPIIQIRAQFPCDDPLEVVGLKKDGTTFIAEISAKSISYQGRTARVVGIRDITVRKQAEDALRQSEARNRALLHAIPDLIFRLSREGIYLDCHAENANDLVVPARELIGKKVEEVLPAPLAQEIRQLMAQALSCRTIQTLEYQLPIDGTLRYWEARIVVCGEDEVLVIVRDITERNRAQEDRLLTAQRAREAAVRHRLLGEIALRIRQSLDLERILQTTVAEVRQFLECDRVFITHFDKRLQGNIAAESMAPKWGSVLEVLRGNSVYIRELQALFESDDLQVIDDTTQADISPLRTHYFGQYQVKACLAVPIMISDKKLFGVLVAHQCDRTRHWQPFEVDLLKALSTQVAIAVQQSQLYEQVQTLNTNLERQVEERTQELKQKYTELQELHRLKDIFLHAVSHDLRTPVLGWLMVLNNLLHRQESDGLSVGKSQELKVSQLNIEGSDESLQPCQPESIPVSRSVLERMMQSSDRQLRLINSLLEVHASEVAGVALQCDPIQLGELVRILVEDFEPLLAKNQATLMNLVPANLPLISADAGQLRRVFENLLNNALNHNPPGITIRLEAQVKEEMICCTVADNGVGMSQEMCDRLFQLYFRGKDAKNFSQGHRPYTGLGLGLYLCRQIITAHGGEIGVKSRPEQGTTFWFTLSVLL
>NC_019738.1|WP_015183787.1|4572910_4573417_-|cyclic-nucleotide-binding-domain-containing-protein
MSYNQFRAFQYLNQTQLQNFVSACQKIIIPAGQRIVQQNSQGNQIFFVLEGNVRVFLDTPTGEKDLSTITAPTVLGEISFFSGEPNSANVMALTQVRALTIPFDVLRQRLHTGDAASSIVMLNMAAAIAQRASAMTRKVSELYSTQPDDKLSELQNASKNLFGEWSFL
>NC_019738.1|WP_015183786.1|4572326_4572746_+|hypothetical-protein
MSNLSIEAQALRQRISRYFQPTREELDQILKLEFQFVQLLDVVLRLYPLDAQTQEAIAYLEESRTWAGLSVKRGQQIGYQPSDYPPHSDILATDSESVESAFDVVHNTILSRCMPNREMDLALARLDDAKAALNLGASR
>NC_019738.1|WP_015183785.1|4571419_4572148_-|phytanoyl-CoA-dioxygenase-family-protein
MTEIEQYLFDLQGFLIVEDALTGAELAALNEIIDQQIALVDEPGKLWLRFNRLLSWGTPFQNLIDNPRISPYLLDLLGPKFRLDHDYIHIIRQGTGPIGSDLHGGGTPYDPCQYYLYKNGRMYNGLTAVAYNLTDVNPGDGGFGCIPGSHKSNFPLPAELQDLAYPHVCVQEIVGKAGTAIIFTEALTHGTLVWKGKCDRRTLFYKYSPYPSAWLRNYYNHDDYPNLTEAQRDILKTPGVYP
>NC_019738.1|WP_155898045.1|4570353_4571271_-|phytanoyl-CoA-dioxygenase-family-protein
MLMSQAKTILSSLGHELDCRSDTFGDLKDSSDLLSRPDALRLRMQEEGYLYIKSLLNSQKIWQARREIADCLAAEGSLRADSPIEDCIAKPGLTMSFRPDLATRSPTLQEVLYSGAMMDFFHLLLGGEVRHYDYTWLRAVAPGRGTYPHGDSVYMGRGTDFLYTAWTPLGDISWELGGLMILEKSHRLETIKNGYGRKDVDSYCTNRKNASMYASGEKWWDGALTKNPVSLRKKYGGRWLSAEFQAGDVLIFSIFTIHASLDNRSCAIRLSSDSRYQLASEPVDERWVGKNPVGHSAAGKRGRSC
>NC_019738.1|WP_015183783.1|4564468_4569949_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MSVNRIWKGGLCRKGLQWTTGALGLLPIGLAVFSVPVFAQIVPDNTLGNESSLVTPNVNIRGLPAERIDGGAVRGSALFHSFSEFNVNNGQRVYFSNPAGIADIFSRVTGSNVSNILGTLGVDGGANLFVLNPNGILFGPNAQLDIGGSFLATTGSSFKFSDGSEFSATQPQAAPLLSINVTPGVQWGASQPGATITNRGNLRAGQDLTLAAGNLDVQGQLQAGRDLTLQAQDTVKVRDSVTNPFIASAGGKLEVQGNQGVDIFALNHPDSGLFSGGDMVLRSGNTVGGDAHYWSGGNFRIETLDGNLGNLFSPNDPVIRASGDVNFGGYTGASLHILAGGSVTITRSVEIRRADPINGLVEDVTLSDGTPVKINGRTQPTLDIRAGTTAFGTPGTIGTSTATSANITLGTITNNGGMVFLTNQYQPNLALAGGNINVNGDINAFTGVFSSEKNGGSITIDARGNISTASLYSSTSEEGNGGAIALIAGGNISTQKLSSASNYLSIPDYSGGNGGALSLKAGGYISTGELDAYSLGGNGGAITLDAGGYIKINGDIFTESPNSGDIGGGAITLTAGGEIITGNLSSVSSRLLSKDIGTGGAITISTTSGNISLGKVNSFSYSQYGNSGAGGAIDISTTNGNISLKGDLNSFSYSKFGSSGTGGEISLSVRNGNIVGERFTADDSRQRFPLLNSFSVSEQGTAGNGGKVTLEAKNNVSNLEILTLSSSSEAGAVDVKGFGNLSLTDTNIITSKPLTLTIPGNPSETITLDVGKTGRSGDVAITSLGNLTFNNSRILSDTKGSSPAGNVNITSPGLITFNNSQVISNTTNTGQAGSITVKAPELRLDSSSRLSAETSSSGRAGDLTLRPYDSGQTLSVLLQEGAKISASTTDIGKGGNITITAPESVTLSGKGSISATTSSNGQAGSVTITTPTLAIDGTQISTSTSGRGKGGDLNITAPNSVTLSGDGRLSAETTGSGQAGSVNITTPTLNINTGAKVSTTTTQPATGTGGDITVSTNTLNLSGADSSLLAETQGVANAGNLTLNPYSGNDLQVNFAEGAKVSASTFGSGQGGSLNVTAPNSVTLRGDGQLSAEATNGGNAGGVTINTQQLSIEQGAQVAASSKNGSGTAGDVNITASTVTLNDGKVTAETDAGGSAKPANITLRNLNTLNLSNNSSISASTQTGQAGSINLNQGANPAALVTLNNSRISAQADGERGNAGGVTLNTSQLSLENGAKISASNISGTSQDITLQGLNTLQLRDRSEISASTQTGKGGSVSVNAQGGNVALTGNSHIQSEAKGGQAGNLDITANQLTLRDGSSATVSSTGGGTAGKLAVSAPEVILEYSAKLAATTQAGSGGDIQLQNLSSLQLRNSSEISASTQTGKGGSVSVNAQGGTVALTGGSHIQSEAKGGQAGNLDITANQLTLRDGSSATVSSTGGGTAGKLAVSAPEVILEYSAKLAATTQAGSGGDIQLQNLSSLQLSNNSEISASTQSGKGGNVSVNAQGGTVALTDKSSLKAEATNGGQAGNLQITANQLRLREGSQATVSSPQGQAGNLSITANNLSLDRGQITAETGQRSDKGGANINLQVTDLLLLRHQSLISANATGDANGGNITIKAPFVVAVPSENNDIIANAFSGDGGQINIIDNYRVFGLKPQNRQSFDTLRQNRTSDISASSQSGNQGNINIQSLSIDPSQGLTQLPVEVIDSSQQIANRCGPGNSKSANGQGEFVVTGRGGLPPSPDDMQRSGAIPPSWVTRDGGNISRSAAPVAPPATPATPPLVEAQGMFINAKGEVVLTAQTPTATPHQPGISEPLCSPATKGNE
>NC_019738.1|WP_015183782.1|4562901_4564314_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MPNAQIIGLGRSGIAAARLLQQQGWQVTLSDSASAESIAARNGSESLQQQQQSLAAEGITVKLGCSLTLDDADLPQLIVVSPGVPWDIPVLVAARSKGIDTIGELELAWRHLQSCPWVGITGTNGKTTTTALIAAIFQSAGFHAPACGNIGNAACELALESGARSEESSSQNPPDWVIAEISSYQIESSHDLAPRIGVWTTFTPDHLSRHKTLENYYNIKAQLLRRSQLQIFNGDDPYLHKMGVKHWPDAYWTSVKGRDSLLGDPNRGFYIQEGWVVSQNEPIVKVESLRMVGEHNQQNLLMAVAAARLAGIEKEAIQEAIANFPGVPHRLEHIITWQGIDFINDSKATNYDAAQVGLSSVASPAILIAGGEAKAGDDTGWIETIHAKAAAVLLIGDAASAFAERLKQSGYERYEIVETMAKAVPRAAQLAQDHNAHVVLLSPACASFDQYQSFEHRGDDFRQLCQRLLD
>NC_019738.1|WP_015183781.1|4560495_4562685_+|glycine--tRNA-ligase-subunit-beta
MPTFLLEVGTEELPADFVDSAIAQWKERIPQSLKEQCLTHDEIEYYGTPRRLGVLIPGLLEQQPDREEEVKGPPAKAAFKDGKPTPAAVGFARKQGVELDTLEVRDTDKGEFVFVLKKIPGRAATEILTELIPQWIFGLEGRRFMRWGDGDLRFPRPIRWLVTLLDGEVLSLELENGSETINSDRISYGHRILHPQSITLSQATDYVESLRSASVMVEPEKRQNLIKEQVESAAQKLSGYAPIDQDLWEEVTNLVEWPTAVVGKIEQEFLSLPSEVVTTVMVTHQRYFPVFTNETEGKLLPNFITISNGDANKSDIIAAGNERVIKARLADGQYFYKTDLSLPLENYLPKLEKVTFQDELGSVRGKVERIEKIAAQIADQLAVSASERTDILRAALLCKADLVTQMVYEFPELQGIMGQKYAAASGESEAVATAIFEHYLPKGASDKLPDTLTGQVVGLADRLDSLVSIFGLGMIPTGSGDPFALRRAANAVINITWGSNLSINLHQLLQDISADFVAAYPDKSSPVESLQEFFIQRIRTLLQEGSVVYNLPNVDYDLVNAVLGENDPEYTERALKDLLDVRDRALFLQEIRNNGKLDEIYETVNRSSRLATQKGDLDTQQLDPTALIDTTLFQKTSEQAFYDAIVNLVPQTKAAQEQRNYQQLVNALAENAPTVSRFFDGDDSVLVMVAAKENPTEEELAIQRNRLNLLGLLRNHARVLADFGAIVKS
>NC_019738.1|WP_155898046.1|4580827_4581466_-|IS1634-family-transposase
MYTADNLKRMKQLKYHTLEAVEIIEQDHYSQPGRPAKQTRPTHKTYHIQATLVVNETVLEQQRQQAGRFILATNVLDKEQLNNDAVLSEYKEQQSTERGFSFLKDPLFFADSVFLKDPGRIAAVGMVMGLCLLVYNLGQAALRQALVQADESLPNQLKKPTQRPTLRWIFQCFQAVHLLVIDGVEQIANLTDERLKILRFFSQACRDYYLLC
>NC_019738.1|WP_015180904.1|4581650_4582562_-|IS5/IS1182-family-transposase
MSNIPEYLEKNQQESKRLIGLEYEQLQQLIAAAELLHQQKDIEIEQRKVRINKAGGGRRPKLSVKDQIILTLVYLHPEPTFQMLGVQFGVSESTANDIFHYWSELLRELLPASLLEQVKKNPGEYKWVQEILAELELIVDSCEQPIPRPKDYQEQKKFYSGKKKNHTLKNQLIVTPNGQEIVDVIVGKPGPTSDINIWREGQSKLAPTQKFKGDKGYIGEVQIETPQKKPRARELSQEEKQKNREKASERIFVEHVIRLLKIFRVAQERFRLRAKSYQRIILLVCGLVRLRIGTLFINSSVCD
>NC_019738.1|WP_015183791.1|4582633_4583689_+|GUN4-domain-containing-protein
MSNSVKNISRLSQVAGKLQERGLSPDANEGWNQASRAMDISNDELRQAMLFASISKAHQQLGRQYEESKEKEDAKTQWEQAAETLKESVKRLPPKENMDVPEQWATLVHVKRVQGSFFKEQKNIQDALTAYKEAFDTLKKASSTLQKFDTNIEIIIYDEFLPEKQKILSANAIENLHREFIALLSESSNPNKQQKIREVRESLQAHLFAELNYLMKVRNWKGADQKNAVLMLNIAGIEKRGYLDTSDIEKFPCPALRAIDKLWVKHSEGKFGFSVQKDILDSVSKQPGHYDNINEETWGNWVSRVGWQGSDTNYNLNQAEPGHLPRKEGVDMGGFGRLWRGFFSLSATCRL
>NC_019738.1|WP_015183793.1|4583990_4584896_-|phosphatidate-cytidylyltransferase
MPWSRIFSGIIAIALALGMIVLGGWYFTFGFCVIVYLGLLEYFQLVQVKGIAPAAKITIVVSLLLLFTSAVSPTLTDALFPLAGTFICFYLLFQPKMASIADIASSILGLLYGGYLPSYWVRLRVGWVEVSALPADAVASATNLPLKGYWPTSWTDLGALPEALTATLLAFCCIWAADIGAYFFGKFFGRTRLSHISPKKTVEGAIFGLLGSIAVATAGAWYLHWPTWQLSGIILGTLVGIASLLGDLTESMMKRDAGVKDSGQLIPGHGGMLDRTDSYVFTGPLVYYFVTLLMPLFDKFL
>NC_019738.1|WP_041781011.1|4585153_4585756_-|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT
MSSSLWPYVTPGIPDDLFEQLPGIPLSQREVRLLLISALRMQPNSLLWDIGAGTGTISVEMGLLCPQGKIVAVERDGEVANLIRRNCERFEVQNVQVIEGSAPECLKNLPQPPQRVCIGGVRQIKNILKEVWQYLPPEGRVVATASNLESLYGISEAFAELHARNIEVVQSAVNRLETRGTHQTFAPVNPIFILSGEKLD
>NC_019738.1|WP_155898228.1|4585834_4587331_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MLDQIKAPLLQALKELAHKPHAPFYAPGHKRGQGIPQPLADLLGASVFPADLPELPDLDNLFAPEGVIKEAQALAAEAFGADQTWFLVNGSTVGVMAAILATCNSGDKIILPRNIHQCAIAGLVLSGAIPIFINPDYDPITGLAYSITPTALATALKRYPDTKAVMMLYPTYQGVCGDIQAIAQLTHQHNIPLLVDEAHGPHFAFHPDLPPSALSVGADLTVQSTHKVLGAMTQASMLHVQGHRIDRERLSKSLQLLQSTSPSYLLLASLDAARQQMALQGEQLMTRTLYLAQEARSKISQLPRLSVLEPLHSPGFFALDRTRLVVKVSELGLSGFEADEIFHQQLGVTAELPTLEHLTFIISLGNTEDDIQQLIQAFTTISQDNYCPKCVAPLQDLLQKWKAELLFVHPSSFIICPALSPREAFFAPTETLPVDQTLDRMSAEWVCPYPPGIPALMPGEMINPAAIEYLQQVLILGGTLTGCSDPSLKTLKVVSHQN
>NC_019738.1|WP_015183796.1|4587723_4587993_+|hypothetical-protein
MIYPAPEPQIPSPEPAPLPSPNPAPSPDPSPIPEPVPSPIPQPVPAPVPEPVPAPIPQPAVPQPVPEIVPSPIPQTVPGTIPQTVPGVQ
>NC_019738.1|WP_015183797.1|4588051_4589143_+|redox-regulated-ATPase-YchF
MLRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDERLQVLAKISNSEQIVPTRVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDPVRDIEVINLELALSDLAQVDRRIDRTRKQARTNKEAQIELGALEQLSAALNEGQPARQVTLTEEEVESVKVLGLLTAKPVIYAANVSEDDLASGNDWVEQVRQVAVTDNAQVVVVSAQVESELVELPEEERGDFLASLGVEEGGLKSLIRATYELLGLRTFLTTGPKETRAWTIQAGMKAPQAAGAIHTDFERGFIRAETVAYNDLVATGSMNGAKEKGLVRSEGKEYVVQEGDVMLFRFNV
>NC_019738.1|WP_015183798.1|4589631_4592073_+|penicillin-binding-protein-1C
MRDYIRQKVWQRLSRSHRRFWKVTLVVVLLGLVVRSLPYLAPIRAHDLVQDQQAVEFSDRNGLPLGTLLTRDQDHTAVLPIEQVSPPFIQAILAAEDGRFYQHGALEMKAIARSILSSIHAGRITSGASTITMQLARMLEPAPRTLSAKLGEIWLSWRLAAGMSKQEILDAYINRLPMGGNIYGVEAASRIYFGMSASELNIAQASILAAIPNNPNYLNPYDYWEPLKRRQVYVLNRMVKDGYITRQQADRAYEEKISLQSRQQGILAAPHFLFWVASQLPQSSIPHRMSQIRTTLDRPLQQFVEAQVQQIIRTLAPNNVHHAAALVIDNHTGEVLAYIGSPDYFLEAQLGRNDGVQALRQPGSTLKPFVYELALENRIIRPNTVLADVPTRYAIPGAKLYSPADYSETFQGPVRVRVALANSLNIPAVRVLEKVGVPTFLQRLHQLGFAHLTHPPDYYGLGLTLGSGEVSLWELAHAYLILANQGQVKPLVTQINSPLIKQENNPKSLIGSATTWALITDMLSDPHARAKAFGVDSVLNLPFPVAVKTGTSSNYRDTWTVGFTTDYTVATWVGNFDGEPMRQVSGVTGAAPLWNRIMLHLHEHQEPTAFSPPSGLVQRSVCALSGMRPTPACPSVVQEYFYPEDLGEYERHPDTFYQGVSSGSDGQPSQYRLNLPEEYNEWLAMQPREATLSSVSHTLPEGGKLSLSGNHLKIVSPRQGDSFLLYPTESGAVQRLEFKLAATPTQPVEWWLNGEKLAMDSSNSLFWQLRPGNWTLEVRSGDMSNRVSFQVQLAENRATRRGFLIAPQGNHQR
>NC_019738.1|WP_015183799.1|4592289_4594116_-|calcium-binding-protein
MAWYYYYGTEASNSIDLTDNYYYPSYYTNLYALGYGSSDTLSGGAYYDILYGMGGDDDLYGKGGNDYIDGGAGDDYIDGGTGYDTMYGGTGNDLYMVDSAYDMVYEYAGEGTNDWVYSSVSYSLGSNVENLYVYGTAYYGVGNSLDNYIYGNTYDNYLDGGYGNDTVYGGSGNDTVYGYYGNDSLYGESGNDSLYGEYGDDTVYGGYGDDYIDGGTGYDAMYGGIGNDLYMVDSSYDTVNEYAGEGTSDWVYSSVSYSLGSNVENLYVYGTAYYGVGNSLDNYIYGNTYDNYLDGGYGNDTVYGGSGNDTVYGYYGNDSLYGESGNDSLYGEYGNDTVYGGYGDDYIDGGTGYDAMYGGSGNDTYVVDSIYDTVYEYASEGTNDWVSSSVSYTLGSNVENLYLTGTAYSGYGNSLDNVIYGNSYSNYIDADYGNDTVYGGSGNDTVYGYYGDDYLSAGAGNDLVYGEYGNDYLLGGYGNDTVVGGYGNDTVNAYGGGATEMDYLYGKTGGYNYGYTDADTYVLGDSYGAYYQDASLYGYSSYAVVMDYSYSEGDKIQLSGNSSNYVLGYANYGGTSATDTYIYSYSYSAGYDLVGIVQDATTLNISYV

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Crispr_ID: NC_019738_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_22

6181631-6181740

Orphan

Consensus_repeat	Method
TGCGATCGCACTTAGAGCAAACTCAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019738_22

>merge|NC_019738|22|6181631-6181740|CRISPRCasFinder
TGCGATCGCACTTAGAGCAAACTCAAACAGAAATGGCTACTCTACGATCGCAACTCCAACAAACTCAAACAGAAACTCTTGTCATGCGATCGCACTTAGAGCAAGCTCAA

>NC_019738|22|19|6181631-6181740|CRISPRCasFinder
TGCGATCGCACTTAGAGCAAACTCAA	ACAGAAATGGCTACTC
TACGATCGCAACTCCAACAAACTCAA	ACAGAAACTCTTGTCA
TGCGATCGCACTTAGAGCAAGCTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015185061.1\|6189240_6190635_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_019738.1\|WP_172642256.1\|6182074_6183658_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_019738.1\|WP_015185062.1\|6190641_6191628_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|367052
NC_019738.1\|WP_041781268.1\|6179731_6180658_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133017
NC_019738.1\|WP_015185057.1\|6184700_6185558_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NC_019738.1\|WP_015185050.1\|6173931_6177765_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NC_019738.1\|WP_015185059.1\|6186917_6187889_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187570
NC_019738.1\|WP_015185048.1\|6171820_6172555_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NC_019738.1\|WP_015185045.1\|6168104_6168950_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185064.1\|6192444_6193782_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185043.1\|6165596_6166559_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|372616
NC_019738.1\|WP_015185046.1\|6169001_6170975_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NC_019738.1\|WP_015185060.1\|6188281_6189031_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|294013
NC_019738.1\|WP_015185056.1\|6183798_6183939_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185051.1\|6177818_6178664_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NC_019738.1\|WP_015185049.1\|6172605_6173919_+\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|377422
NC_019738.1\|WP_015185044.1\|6166564_6167932_-\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|240528
NC_019738.1\|WP_015185058.1\|6185568_6186777_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_019738.1\|WP_015185047.1\|6171013_6171820_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NC_019738.1\|WP_015185063.1\|6192032_6192401_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015185061.1\|6189240_6190635_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_019738.1\|WP_172642256.1\|6182074_6183658_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	3.11831e-17
NC_019738.1\|WP_015185062.1\|6190641_6191628_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|367052	pfam02361, CbiQ, Cobalt transport protein. This family consists of various cobalt transport proteins Most of which are found in Cobalamin (Vitamin B12) biosynthesis operons. In Salmonella the cbiN cbiQ (product CbiQ in this family) and cbiO are likely to form an active cobalt transport system.	8.73736e-26
NC_019738.1\|WP_041781268.1\|6179731_6180658_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133017	cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.	1.27751e-61
NC_019738.1\|WP_015185057.1\|6184700_6185558_+\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.01758e-28
NC_019738.1\|WP_015185050.1\|6173931_6177765_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.02823e-30
NC_019738.1\|WP_015185048.1\|6171820_6172555_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.38738e-110
NC_019738.1\|WP_015185043.1\|6165596_6166559_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.21729e-24
NC_019738.1\|WP_015185046.1\|6169001_6170975_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NC_019738.1\|WP_015185060.1\|6188281_6189031_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	2.68444e-27
NC_019738.1\|WP_015185059.1\|6186917_6187889_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|187570	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs. GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.32319e-167
NC_019738.1\|WP_015185051.1\|6177818_6178664_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.59777e-07
NC_019738.1\|WP_015185049.1\|6172605_6173919_+\|O-antigen-ligase-family-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	3.34185e-07
NC_019738.1\|WP_015185044.1\|6166564_6167932_-\|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.56967e-77
NC_019738.1\|WP_015185058.1\|6185568_6186777_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.57969e-101
NC_019738.1\|WP_015185047.1\|6171013_6171820_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.22297e-56

>NC_019738.1|WP_041781268.1|6179731_6180658_+|glycosyltransferase-family-2-protein
MQCQYQIAAYITAYEDSEAVKQCIHAINRQDFPIQKILIVDNSQQKLVIDEKSIFENVIVKFYPENIGISGGLAIAFAWAIQGGYDFLWIFDQDSVVEDDCLTKLLLAYESLNSSEYLIGIIGPTAIDPRSHQIIEGAVFEDGCFKGRKPPETEQPYECDSPITSGSLTSLTAAQTVSLPRTDLFIDGIDLDYGLRLRQQGFHNLIVPKARMYHNFGKPIQVEVFGRERLIHNYSPLRYYYIFRNHTYLDIHYSQGWYRFINYWRRVNYLSRTIALILLCIPEDKALKIWACLLGLIHGFTGKLGKTW
>NC_019738.1|WP_015185051.1|6177818_6178664_+|methyltransferase-domain-containing-protein
MNNLKIDLGCGACKKEGTIGVDIEPHSCVDYVLNIQNEALPFPDRSVQYVHSSHFLEHIDNPMPLFQELGRVCQNGAELEFWTPYGWSNPAFILSHKIFYNEDHYLHLCVWYKDFWKDFLKANWVLKEFIYIVEPQVLTELYSNKISLDFALKYYKGVVKEFGVSIEIRHDDDGAVCQPKRTFAVERYAQRYPVNVNSLQPNDYLDGDYLNKAIEWFSLGTQQTESLESLQSLELLRGQLLKAQAELEQAEATISAMETSKFWKLRKAWFEVKKALNMKST
>NC_019738.1|WP_015185050.1|6173931_6177765_+|glycosyltransferase
MYQDSQTNNKPVQLHVMHSWGGGIERWVRDYSHTDILRTNLVLKSSGVPGIPGQRLELYQSIDIDIPTRVWELTLPIHATSVTNLDYRYALDEIINHFNVSAILISSFIGHSLDILNTNLETTVICHDYYPFCPAINIYFGKVCKECNFSHLQHCFKENPYNNLFPQASASEWMPIRKSFLKLIQHHKVTLVAPSDSVKRNLIKLEPALANVQFKIIPHGAELPIHSDIELDDLHQENRKLKILILGRLVFHKGLELLKEIYQEILDVADIFLLGCGATGQNFQEMPGIHIVAEQYSLDDLPKLVGQISPDLGLLLSIVPETFSYTLSELSLLEIPVLATNLGSFQDRIKEGVNGFLVTPEKNALIDKIRELSEQRHLLAKVSTYLKGISHRTLQEMVENYYEVVTLTHPPQSKASRELNALNLEPSELERSHSQIVNTQIKLEQTQTQLQQTQAELNKALFQMQETKFGLERSQSQLERSQSQLERSHSQLQHTQAELGKSQSQLLQAKALISGMESSKFWRLRLAWFKVKDILNLVSDSEIYRPNALASLSDNSRFNNNPGFSKNISKMFAFISGCPGDAYRYRCHHQAEILRYVGYAVDVYEPNLFLYEELLKNYRIIVAHRVPYTYEFEQFVAKANNLGLKVIFETDDLVFDTSLLHQIDAYMKMDLKDKQLYEDGVRRYRKALSLCEAVVVSTEKLKQKIEKSFPEKAVVISRNRISSDMEQEAIKARDIYIPDDQLIRIAYFSGTRTHAKDFAECVYALSSILKEFPDVRLMVVGHLDIPEELQPFSSQIEKFPFLPWQDLPGLYRKVTINLAPLEKNNDFTESKSELKYFEAGLVSVPTVASNWGAFRVGITDGVNGRLCSNPQEWENALRELITNPKLRQEMGQKAFDDVNARYLTRTAATLTGKAWQTLVGGKILPDKPLSIAFVLRAPIAQTGGGYKHIFYLAHYLAEQGHNVNIYVEPMAHLTGFTPEQVQKFCEENFGKSKAIIHCGHADIVESDVAIATNWPTAYVVDKLVNTRFKAYYVQDYEPYFYEPDDPCFLQAEATYDLPLGIICLDKYLSQVLSKRNRIQYPYINFPLNEAFLAKAPVLTRHCNPDRSCSILFFARPNIPRRNFAVGVEALDKLHQQNPDVQIKLYGMEEAIELPFPYQNLGVLTQSEAAEAMRSSDIHLSFSLTNISTVVFEAMACGCATVEADVPPVRGMVEDGKTCILAEPNSQAVSEALMELVNNPVLRREIASAGYESAKTLTVARMCSKFEQLLNQYTFRTA
>NC_019738.1|WP_015185049.1|6172605_6173919_+|O-antigen-ligase-family-protein
MKNFPTIVSWLYSRQTFLIAGTLLFSVSPLLCGLLYFGAALVSIFNWKQVIFTRERIVLTVCIVVLSIGLAFRKVEPERILPGSISLSDYIPFLPFFFLISLEPFSESEITNFFYALILTIPQQFLLAVGENYLGWYGRFYFLGEQFPLIDVCVGPIARGLKTSASFFNPNIFSVYCIFCAGICLNLLIAELKPFTLNYTINLKLGIRILVPFFGLALCTTLIIWSGSDAGLMIFLLSTIIWLSWMTDKWLYLITIGAVGTLIAFISLNSFGWLTQFVTFLIPQRLLTLLNSVLASWNDRKPFYKCAVQLIQKKPLFGWGIGKFSQECANRTGMEMAHAHNIVLQLGADTGLPLAILFLSFLGYILFSCIHFLRTVRTKKSMTYQLSAGLIIVSISIMLMQAFDLGLLMSYRLNFLFWICLAIPYSLASQPKVSKAL
>NC_019738.1|WP_015185048.1|6171820_6172555_+|ABC-transporter-ATP-binding-protein
MELIRLDRVSLLRRTQEEYSYDLKKTILSFLEGKYRKPAKKVVLDRIDLVVEAGEKVGIIGANGSGKSTLLKVICGILQPTSGTVRVRGQIAPLIELGAGFDPEMSVMNNIIFYGVLLGFSKAEMLQRTPAILEFAELQDYALMPVKALSSGMVARLGFAIATEVHPDILILDEVLSVGDESFKNKCKRRIDKFWEANATVLVVSHDLGFIQQSCDRAIWLKKGEIQFSGSAEDAVKTYLSSLV
>NC_019738.1|WP_015185047.1|6171013_6171820_+|ABC-transporter-permease
MTLSLKTSLIRPEAQRYWELLQVLVARNLNARYRGSFLGVYWSLFNPLIMTGLYTAIFGMAFSSYYHNSLLNYVLSAFTGLVVINFFSASTAQALSSVVNNGGLLNKIRLPMSIFPVSMVMANVFQFAIGVLPLLAIVTLVTSRNLVNVLVLPLPLLALTLVCTGIGLLVSGLFVFFRDLPYFYELITFVIWVSSPVFYPAAIVPATVKPFLVLNPLWLVIESLRQISLSGTLPDLNLLGGALLSGVLFSMLGWVCFSKWRSQFMDLL
>NC_019738.1|WP_015185046.1|6169001_6170975_+|polysaccharide-biosynthesis-protein
MPKRVFFPSIYRLGQIGLDSCIAWLACSLAFSLRFDGDIPASYQTLAWMLPLLAIPGRLLVQSAFGLYKQIWRLFGLKDAITLFQAITLYSLLLLVTNRLVIPRLQPVNGIPIGVAAIDWSFCLMGMIGLRYARRWSLSQQQLGRYSRHIRRQGLPPTERQRVLLVGAGRAGCQIVQEVQQNPQINLEIVGFVDDDPTKVGRKVEGVPVLGKTSQMSAIAQSLNADEVLISMPSANAAQIRKIVNQARGSSLKLKVLPGHGEIIRDRTLTPQARDIQIQDILGRPEIKLDFDAEFSSQFPSARSQIYQQTVLVTGAGGSIGSEICRQLARLEPKHLLLVGRGENSIFNIEQELRRNFPNLPLTALIADIRHQTRIEQIFKTWKPEIVFHAAAHKHVPLMQHNPTEALENNALASFHLAQLASTHNVNTFVLISTDKAVEPNNFMGLSKRLAELLVKACSGQGHTRFLVVRFGNVLGSRGSVVPIFQEQIARGGPVTVTHQAMTRYFMTTPEASQLVLQSLAVGQSGQTLILDMGQPVNIYNLAEQMIHLAGLSEELDIPIQITGLRPGEKLHESLVSSTESVVSTGHPKIMAVSSQPPSGEVLSDVLTTLSRSEISHLPVDALWDLAQHCRQALELSQFNGGVENVEPEKKSDRYFT
>NC_019738.1|WP_015185045.1|6168104_6168950_+|hypothetical-protein
MDSLHTKEYQETQDDEISLAEVKQFFRNNWKFIGLTTVVLSAIAIPLSLLKPQQYQKQLTLAVEPVPLTIAGQSLLQLDATQASNLAVKFLKNQKLDSISAQPQYDPIAQEIQLSLQSANASSLKEISPKIISQVETGFQTKLDQAIESRLTNIEQEQNKRRQVQTQLEQQITQFSPNNTARLNALEEQRAQVITNLALTEYDRKYLEQAHKELSKFTAKLISVQIVKESEVQPTRSLKQVAVIAVIGSFLLAVFAASTRHQILRLKKELSQQKPQSSPDV
>NC_019738.1|WP_015185044.1|6166564_6167932_-|polysaccharide-biosynthesis-C-terminal-domain-containing-protein
MHKRWGVAALLSAWNHLTTGSVNRKIFGAAVTVALFTGMVKVAYVLQELVVAWKFGTGDDPDAFLVAFMLPTFLVYVVAESFHLALVPTYIKLREQEGLKAAQRLVSSTMIWSLGILGFTALFMVITVPLYLPVIARGFSPAKLALTEHLLYILTPIVILKGVAVIGRALLNADEQFVFAAFSPVITPVLAVVFLLLGDKAWGIFPLAAGLIVGTALEVLLVAAALKKRGIGLHLKWYGFDPHMRQVASQYLPMVVGAFLMGSTTLVDQSMAAMLSPGSVAALNYGSKVVAFPLYLGATALGIAVVPYFSQMIAQADWVGVRHTLSRYLGLIFAITVPLTIILIIFSKPLVQVLFQRGLFTTQDTHSVAVIQGFYALQLPFYIAGILVVRLISSIQANQILMEAAFYNLLSNVILNYLFLHYIGVSGIALSTAIVYLLSFVYCWFRLKKQMPKLE
>NC_019738.1|WP_015185043.1|6165596_6166559_-|class-I-SAM-dependent-methyltransferase
METINCNLCGSEEYRVVYSMPDRLYFNDEWFTVVECKSCGLGFVNPRPTYSEIFRYYPPSFYESFEKERVFHQRRYRNQAKFLTGIPMGKDKNILLDVGCANGDFPRYMQTIGWEVEGVEVSPNSKPISDFKIYNQEFTDIPIHEAYYDAITAWAVLEHVHNPMSYFRKAAEVLKPGGFFVFLVTNFESISSKNLFREDLPRHLYFFTEKTVKEYLEKSGLELLRSDYSDQIYSMRPVNWLRYYVYRYLKKHNLKWEDIPLTRIEYFNKNKLNKNLWSNLQYAVSQNPFTLVDIMLMPLFEKYQMLSKSYGIVTYIATKH
>NC_019738.1|WP_172642256.1|6182074_6183658_-|calcium-binding-protein
MGTLGDDYLLGGTGNDYLNGGNGSDIIDGNSGDDVISDSLGSNLIYGGLGADFINTGNGNDIIYTENGFLDASGVSTNFVDAGGGNDTVVGGFGSEILNGGAGDDEIYGIGGNDTIDGGFGNDFIFGALGNDVIFDFAGNNKIYGYYGSDFINTGNGDDIIYTGSDILDPLDVATNFVDAGGGNDIIVGGYGNDILNGSAGNDIIFGISGSNTIDGGFGNDFVRGGLGNDVIVDYAGNNIIYGYYGSDTINTGDGDDRIYTDDSILDPFNISINFVYAGGGDDTVVGGYGSEVLNGGAGNDTIFGIAGLDLIDGGLGDDYLEGGIDSNTITGNAGNDLILDILGFNFLDGGDGSDTVGGGLDADTIYGGLGADALFGGDGDDFIGGGTVNAFNFSDDYLEGGNGNDTLWGGYGSDTLIGGNGNDRLIGIGGYDVYRGGFGTDTFVLGQAGFVDFLGLGYATIKDWVFGEDIIQVTGNLNDYTLQIGDFSGTSALDTEILFRGDTIAVVEDSAAAFIFAGSTVVLTFA
>NC_019738.1|WP_015185056.1|6183798_6183939_+|hypothetical-protein
MQLLAATRAIAPHKNFDFVLGILSAYISEVSVPYAGADQKNRDRMT
>NC_019738.1|WP_015185057.1|6184700_6185558_+|glycosyltransferase
MIYFLTVNYYSTRLIARLIDSIPATQTIPHQIVVVNNSANDQELKDLYTESLQILDAQTNLGFGKACNLGLNWIYERNPNAIVWMINPDTYLPENTLKKVSPFFNAHPELSIVGTLIYTPAAELWFAGGQFIPKLGAILSTDLLSSHPDTAYVFCDWVSGCSLLINLRHFPECPQFDPAYFLYYEDFDFCRRYAMQGHQIAVTSQFAVVHEASAIANRNMTKKLKHSTYSYLLTLERYTNKAIFILRFLRLTLYSFILLLLKPQTALGKLAGISSYLFEKFSNDQ
>NC_019738.1|WP_015185058.1|6185568_6186777_+|glycosyltransferase-family-4-protein
MTDDQTLVNLSVLFSKPTGISTYAINLLPHLQQLNPTLLISPTVSTWMPLSDYTCYSIPGNLTPEQGTKGHFRRLLWTQLQLPRIYNTLRSRLLFSPIPEAPLYTNCRYVVMVHDLIPLRFPRRFSPLTPYFRYYIPQVLAQAQHIICNSTATARDITDFFHIPSAKITPIPLAYDANHFRCLERLSEVTSPLPPQPPFLTGEYKEKRLSLDSSNEPREGEASRNRPYFLYIGRHDPYKNLHRLIDAFAALPNCHDYELWLVGSTDQRYTPKLGDQADQLGLTHQVKFLDYLPYNQLPTIINQAIALVFPTLWEGFGLPVLEAMACGTPVITSNLSSLPEVAGNAALVINPYNAGEITEAMQAIATDSELRSRLRALSLNRASQFSWAKTGQATVEVLQRYL
>NC_019738.1|WP_015185059.1|6186917_6187889_+|GDP-mannose-4,6-dehydratase
MPKKALITGLTGQDGSYLAELLLSKGYQVYGLVRRSSSGNISRISHLSGNVQILSGDLLDQCSLMDAIAASQPDEIYNLASQSYVPLSWTQPSLTAEYTALGVSRLLESIRRCKSDAKFYQASSSEVFGQPDESPQTERTAFRPRNPYGVAKAYAHWMTINYRQQYNLYACCGITYTHESPRRGAEFVFRKITRAAAMIKLGLAQELKLGNLDARRDWCYAQDAVYAMWMMLQHEQPDDYIIASGETHSVRELVECAFNCVGLNWQDYVSVDPAFYRPDEPVQLVGCIDKIQTQLGWKPHSTFNRLVELMVDYDLKELSNSKA
>NC_019738.1|WP_015185060.1|6188281_6189031_+|winged-helix-turn-helix-transcriptional-regulator
MYKWGDLRLEPEACEVSYQGQTLRLYPKEYELLKLFFDYPKRVLSPSFIIDRLWSFDTIPSESAVRTHIKGLRRKLKDAGAEDVIQTVHSLGYRLKPLPKETQKSDSSLSPMLIKLLALHEIEHIIVDKNFIILEASPDVKKFSDYPWDVEIGREVTLAFPELIGLESTLLEILENQKPSFDIKGIARSKNSLRPDYINIYAMSEPTENQSNQRLLLLFEDSSEKMIWKQQVVQQENESYLLIGEPFKN
>NC_019738.1|WP_015185061.1|6189240_6190635_+|ribosome-biogenesis-GTPase-Der
MALPIVAVIGRPNVGKSTLVNRLAGVTDAIVHDEPGVTRDRTYRPGFWQDREFLVVDTGGLVFDDDTEFLPLIREQAMAALAESSAAIFVVDGQEGPTPADETIAEWLRQQSVPFFLAVNKCESPQQGIIQSSQFWELGLGEPFPVSGIHGNGLGELLDELITHLEPVEIPSETSEIKVAIVGRPNVGKSSLLNAFTGENRAIVSPISGTTRDAIDMVVERPGKAEKEGESKTYRLIDTAGIRKKKNVDYGPEFFGINRAFKAIRRSDVVLMVIDALDGVTEQDQKLAGRIAEEGRAAVIVVNKWDAVEKDSHTIYEQEKLVKDRLSFVDWAEIIFVSAQTGQRVEKILDLVDTAAEGHRRRVTTSVINEVLEEAVSWHSPPTSRQGRQGKIYYGTQVASQPPTIALFVNEPKRFNDNYRRYIERQFRQHLGFTGTPIRLLWRGKKAREVGNNIQSNANRATRV
>NC_019738.1|WP_015185062.1|6190641_6191628_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MDLLRSLPLGLYLEQPVTWLHHLDSRVKFIWLMSFLVAPLLANPYWRVALVALLILLTLSAAIPLRVWRQQMGWLLMLSFFVLIVTAIAPDGYSIDSQPRLPTYTQQPANLPIEVPQPRPWYNPFGFGEQPSPSTPATKPPKPLPQPTRYRYVLWKAGPFTVTRRSLDLAIRVSTLLFTVIYSSTLFLLTTAPEEITAGLESLMRPLRRMGVPVTEITLTLTLSLRFIPLVLEEVQNLVRSVYTRAINWKKLGIRKSFQVWLLVAERLLENLLLRAEQIASAMLVRGFTSPNEHRVQWHQLRLRWGDWLALLSLLVFWGLRVVWGGAI
>NC_019738.1|WP_015185063.1|6192032_6192401_-|hypothetical-protein
MNKTIARVSKVFGLGVVIIVLTFLALERATGINFAKNFDQERAELILKENLKKCPKVIYTGSEYGEGTVTVKCSNGKAYVIYHHISCESHNSRNSNFLLDFIGVSDSSITEVDFNTLQSKGQ
>NC_019738.1|WP_015185064.1|6192444_6193782_-|hypothetical-protein
MKKHLSCIALAIAFGISPHFAYAQTHSHLTDEELQKLMPDFQRQVDYWNQYEEPQRQSEAKAFAENWSRRDPTVAPFLGTWAGWEQTMDIYPSTTEGQVCIIYTDDTAQVVSFALGNVLNQRIYDGSGVTFRQGNYLASAWNNNNPTNEAGVEAYRLIAPAKVPTRAYWRDWDESDRVIEQFNAASCIAEASNEALEQRNSTATQSPTAQADNLSISTTDLLQKSMDAYRLKSEAIQTSPACAGFRTVRVGRLRFWTRDYQSPGIFARGLTSLPPSITREADSKTSIVQITEIADSTSEAANPFELMQSEGFGELKLDLTASQVLEILGIPETKGEIVRWGADGLYHQDWYYPQQGITLNMASETPGERQTVFNITLTSPSTLKTQRGIRIGDSYTEVMQAYKDEEDREMSIPYESFIAGSIYGGLIFSFQDSIVNQIFLGAAAE

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Crispr_ID: NC_019738_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_23

6219520-6219795

TypeV

Consensus_repeat	Method
CGAATTCATCNTCCAGNCTNGGAG	CRT

6 spacers

The CRISPR arrays of NC_019738_23

>merge|NC_019738|23|6219520-6219795|CRT
CGAATTCATCATCCAGGCTGGGAGACATCGGATCAGCTATACCGAATTCATCATCCAGACTTGGAGACATCGGATCAGCCATACCGAATTCATCATCCAGACTTGGAGACATCTGATCCGTCATGTCGAATTCATCGCCCAGGCTGGGAGATATCTGATCCGTCATGTCGAATTCATCGTCCAGGCTGGGAGACATTGGGTCAGCGATACCGAATTCATCGTCCAGACTGAGAGACATTTGATCCGTCATGTCGAATTCATCATCTAGGCTTGACT

>NC_019738|23|7|6219520-6219795|CRT
CGAATTCATCATCCAGGCTGGGAG	ACATCGGATCAGCTATAC
CGAATTCATCATCCAGACTTGGAG	ACATCGGATCAGCCATAC
CGAATTCATCATCCAGACTTGGAG	ACATCTGATCCGTCATGT
CGAATTCATCGCCCAGGCTGGGAG	ATATCTGATCCGTCATGT
CGAATTCATCGTCCAGGCTGGGAG	ACATTGGGTCAGCGATAC
CGAATTCATCGTCCAGACTGAGAG	ACATTTGATCCGTCATGT
CGAATTCATCATCTAGGCTTGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015185082.1\|6212769_6213300_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NC_019738.1\|WP_015185090.1\|6221788_6223828_-\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NC_019738.1\|WP_015185097.1\|6233971_6234340_-\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_019738.1\|WP_015185095.1\|6230678_6231968_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133062
NC_019738.1\|WP_015185098.1\|6234474_6235122_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185092.1\|6226695_6227862_-\|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofH	unknown	unknown	gnl\|CDD\|236000
NC_019738.1\|WP_015185099.1\|6235176_6235614_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185094.1\|6229227_6229929_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_019738.1\|WP_015185088.1\|6220510_6221593_-\|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl\|CDD\|214346
NC_019738.1\|WP_015185081.1\|6209706_6212676_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_019738.1\|WP_015185077.1\|6206292_6206952_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|237709
NC_019738.1\|WP_015185083.1\|6213320_6213686_-\|response-regulator	unknown	unknown	gnl\|CDD\|381164
NC_019738.1\|WP_015185091.1\|6224040_6226683_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_019738.1\|WP_015185080.1\|6208839_6209634_-\|MlaE-family-lipid-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|215575
NC_019738.1\|WP_015185078.1\|6207004_6208258_-\|DUF3086-domain-containing-protein	unknown	unknown	gnl\|CDD\|371451
NC_019738.1\|WP_015185093.1\|6228626_6228953_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185084.1\|6213930_6215238_-\|response-regulator	unknown	unknown	gnl\|CDD\|381129
NC_019738.1\|WP_015185079.1\|6208291_6208681_-\|DUF3119-family-protein	unknown	unknown	gnl\|CDD\|371464
NC_019738.1\|WP_015185085.1\|6216243_6218007_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_019738.1\|WP_015185086.1\|6218043_6219093_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015185082.1\|6212769_6213300_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	2.00264e-31
NC_019738.1\|WP_015185090.1\|6221788_6223828_-\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	5.40945e-174
NC_019738.1\|WP_015185097.1\|6233971_6234340_-\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	3.71192e-21
NC_019738.1\|WP_015185095.1\|6230678_6231968_+\|glycosyltransferase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	3.11229e-89
NC_019738.1\|WP_015185092.1\|6226695_6227862_-\|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofH	gnl\|CDD\|236000	PRK07360, PRK07360, FO synthase subunit 2; Reviewed.	0
NC_019738.1\|WP_015185094.1\|6229227_6229929_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.41906e-39
NC_019738.1\|WP_015185088.1\|6220510_6221593_-\|c-type-cytochrome-biogenesis-protein-CcsB	gnl\|CDD\|214346	CHL00045, ccsA, cytochrome c biogenesis protein.	3.25275e-79
NC_019738.1\|WP_015185081.1\|6209706_6212676_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.22699e-73
NC_019738.1\|WP_015185077.1\|6206292_6206952_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|237709	PRK14419, PRK14419, membrane protein; Provisional.	4.87988e-86
NC_019738.1\|WP_015185083.1\|6213320_6213686_-\|response-regulator	gnl\|CDD\|381164	cd19937, REC_OmpR_BsPhoP-like, phosphoacceptor receiver (REC) domain of BsPhoP-like OmpR family response regulators. Bacillus subtilis PhoP (BsPhoP) is part of the PhoPR two-component system that participates in a signal transduction network that controls adaptation of the bacteria to phosphate deficiency by regulating (activating or repressing) genes of the Pho regulon upon phosphorylation by PhoR. When activated, PhoPR directs expression of phosphate scavenging enzymes, lowers synthesis of the phosphate-rich wall teichoic acid (WTA) and initiates synthesis of teichuronic acid, a non-phosphate containing replacement anionic polymer. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.0617e-40
NC_019738.1\|WP_015185091.1\|6224040_6226683_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.14418e-77
NC_019738.1\|WP_015185080.1\|6208839_6209634_-\|MlaE-family-lipid-ABC-transporter-permease-subunit	gnl\|CDD\|215575	PLN03100, PLN03100, Permease subunit of ER-derived-lipid transporter; Provisional.	2.98194e-106
NC_019738.1\|WP_015185078.1\|6207004_6208258_-\|DUF3086-domain-containing-protein	gnl\|CDD\|371451	pfam11285, DUF3086, Protein of unknown function (DUF3086). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.44647e-175
NC_019738.1\|WP_015185084.1\|6213930_6215238_-\|response-regulator	gnl\|CDD\|381129	cd17602, REC_PatA-like, phosphoacceptor receiver (REC) domain of PatA and similar domains. Nostoc sp. (or Anabaena sp.) PatA is necessary for proper patterning of heterocysts along filaments. PatA contains phosphoacceptor REC domain at its C-terminus and an N-terminal PATAN (PatA N-terminus) domain, which was proposed in a bioinformatics study to mediate protein-protein interactions. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members of this group may have an inactive REC domain, lacking canonical metal-binding and active site residues.	1.26117e-46
NC_019738.1\|WP_015185079.1\|6208291_6208681_-\|DUF3119-family-protein	gnl\|CDD\|371464	pfam11317, DUF3119, Protein of unknown function (DUF3119). This family of proteins has no known function.	5.88606e-62
NC_019738.1\|WP_015185085.1\|6216243_6218007_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.31988e-12
NC_019738.1\|WP_015185086.1\|6218043_6219093_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.43077e-68

>NC_019738.1|WP_015185086.1|6218043_6219093_-|tRNA-lysidine(34)-synthetase-TilS
MSNRPNWTRLHARVHQTLRQRHLLAQQRRILIAVSGGQDSLCLAKLLLDLQPKWGWQIAIAHCDHRWPKDEGLVTHVQQLAHNWSLPFYLKTAAELGTSEAAARRWRYQVLCEIAQAEGYQDVVTGHTKSDRAETVLYNLIRGAGADGLQALTWQRPLVQGLQLVRPLLEVTRAETFQFCQEHQLPLWEDAYNQDLKYARNRIRQELIPYLKSHFNPQVETALSQTAELLRADVAYLEDAAQKLRQQAMAPVNGEEQEALFEPCQKATPRINRLVLQPASLALQRRVIRQFLVMVQQGAPSFEQIEEMTALITAPNRSQTSSFPAGMTAVVEGDWIVLRDNNRVDGREG
>NC_019738.1|WP_015185085.1|6216243_6218007_+|hypothetical-protein
MLYLAEVQKQKGGGLLGGGGKTALKLLACQRTDQSWSAVPGDEVIPAEEAKNLNEGALVLINLGGNRQIQGEIELAGSRLARDLQNFSRLLEKAKSQEEEIEQWKQSLTYQSQELNRREMEMEARIEQMQSMEEDFERVEQQRQEVETAKEEAARLAEEFERSRQELEGAWEHLRGEQRRLEEQIAQHAPGLDPSQAHLIQELLEQLSQAVVPTDTVREQLNLSFEVLNAQQAELEEEWQQLEQRQTEASARQAEVDRQGEECQQRKQELQQAQKSLEEAKAELKVQQNALEIKQESVHMLSLQLRTQGELHQQVARLAATSADVKISQRVDLEALEQMPLGELQGTVQGLEQDLEKLVRFVNDQEEELTFQREAVEELHEKIKSASEYDRISMETELAEEQDRYQMLDETLVGQRRNLREREEILNQHQRVLRRRQGISDSNASDNQKIDLGPILTQLEAQRQQQEEDLQKLESQIEQMRRSINQAEEMIRHQAGEQEVKLSELQSLEQNWHSASAAVAQIRGQVESYQALLQPKQEALSQIRQKLEAIAEALNQIQETGDYQLQRIAQLQQTISSLIQSPEFATS
>NC_019738.1|WP_015185084.1|6213930_6215238_-|response-regulator
MQGTLNEIDIRSILQLIELGQRTGELLVEAYSFPINNTGGDLSSKPFAFGRPYQETKPKRRSGPFWFVFFLNGKIAYASDSERSLSRLRDYLRRYKANTALDHLELPSIDSINAPEYGYLWALLEKHILTPAQGRSIIQSMIRETLFDLLSLHNGYFVFEVSPALAPQLTTLEIAPLVTKIMKQVQEWKQFHPHIQSPNQCPVITDMVQLRAALPETAFKTLRQWADGKTSLRQLSRYLNRDILTVAKAIYPYVRKGWVQLVSATAHEASTPRWDGEAKGIPQVPRIVCIDDDMAIGKTVEYILQAKGYEVTAIRDPVQALTLVFQSKPDLILCDLAMPELDGYEICGMLRQSTAFRQTPIIMLTGKDGFIDRVRARMVGSTDYLTKPFGASELLMLLEKYIGWVDIKKSQDENSSPVGLNQEIEQTDITKPASA
>NC_019738.1|WP_015185083.1|6213320_6213686_-|response-regulator
MSTVLVVEDSLAQRQMISDLLKGSGLTVTVASDGVEALEQIQRSSPDVVVLDIVMPRMNGYEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLLRG
>NC_019738.1|WP_015185082.1|6212769_6213300_-|chemotaxis-protein-CheW
MVGNPDFLTGSGQDQAPEFQELESPEGELHLRFFVPSGNEFALPATGIKEVISQSPDRITAIPNASPLLLGTINIRGRVIWVSDLGQFLGDAMVLNTDRPEIPVIAVEDQDTMLGLAIDRIGEMDWLDLEQLQMPTNVPDSMAPFLRGEWVSDKESNQYLRLLDQVAILRSARWAA
>NC_019738.1|WP_015185081.1|6209706_6212676_-|HAMP-domain-containing-protein
MASGTDFAQEYGQAEKAYMQGNYQEAATICDRLVEDFPENPSVRLLLGHIYCYGLQQYDVARQQYEAVLTLTSEQDFIEYANNGLEYANQLMNGAGSGEETASSDDFDISYGDLGETDELGNSSNFENWSNLAAEDDVSSGFDLGSLDFDEVGSDTFTSRSESPFDNPFGGSGMDEQQPPESGHASDTPFAFSSDFGEDSDDLETFGTSTSGFELDDSVFGSPGLEDTPEEFFPDPGADETDMTFVIPGSEEFDDTQTEDDFSPGFTPSSQFDVDFPEEESGTYRDEEIGEPFNSGYPVFEDETLLMGSEDLDNTFAIDRDELGYLSDRRSNAAESLQEDNSLQDEPTFDSAYDQNGFNSSDHFDFDTFDEAFGNQTFVMDEGTEAEEETITGIESRPSAREGFLDEFDVFDDDLGSIPDFSLGVQDDMSAEGSDDADFDILSNSGAVLGATGGLGLNEAADIEAPRSGYRSSGGEDEMFSINNPAEQIPIFNQTKDADNEPIVHVEQGWLAFFENASLNRKQLWTAVLTGAVSAVAVAIVSNIAASTAPGPNQEAVISRLKSTGWAMSLVAGAASFGTTLLLGRVTEKQIKRSTTELQSQFEAVSQGNLNVTATVYSEDEFGQLATSFNQMSRVILTSMSEAQRKAEEQEQAKEDLQRQVIRLLDDVEGAARGDLTVQAEVTADVLGAVADSFNLTIQNLREIVQQVSQAAKQVNRGSADAETFARSLSSDALRQAEELAVTLNSVQIMTDSIQRVAESAREAEDVARTASETAVKGGEAVERTVAGILQIRETVAETTRKVKRLAESSQEISKIVALISQIASRTNLLALNASIEAARAGEAGRGFAIVADEVRQLADRAAKALKEIEQIVLQIQSETGSVMTAMEEGTQQVIDGTKRAEQAKRSLEDIVQVSNRIDALVRSIAADTVEQTETSRAVAQVMQSVELTAQETSQEAQRVSGALQNLVGVARDLLTSVERFRVESNGGK
>NC_019738.1|WP_015185080.1|6208839_6209634_-|MlaE-family-lipid-ABC-transporter-permease-subunit
MSEITSSSLGLWTRRLMEAIFLGGQVMLHLLAGKIHRRNTIEQMALVGPASLTIAMITAGFIGAVFTIQVTREFINFGATSAVGGVLALALSRELAPVLTAVILAGRVGSAFAAEIGTMRVTEQIDALYMLKTDPIDYLVIPRVIACCLMLPILTILAIILGMGGGVIIAESLYGISQEVFLDSARSFLKIWDLVSAALKAVVFGGLIAIIGCSWGLTTTGGAKGVGQSTTTAVVTALLAIFITNFFLSWVMFQGTGSAVIGGG
>NC_019738.1|WP_015185079.1|6208291_6208681_-|DUF3119-family-protein
MTSATSSPLSTQTVELSPSYTLPLVLIVAAVPLLLIKIWVSLVIAVFGLFLLFQAATIRLQFTETALDIYRSETMIRRFPYQEWQNWRIFWSSVPILFYFKEVKSIHFLPILFDPKMLETCLEQRCPKS
>NC_019738.1|WP_015185078.1|6207004_6208258_-|DUF3086-domain-containing-protein
MNSDETQTPEQEPVKKLAVEAFEEQQPELEAEALEELEPLTPKDEVPVQLADDQPQLDLLSSTDAGLSDRAWNLTNLEEKKQTAEPAQPLERERMADLTQTVADLQRQEQELRQKIAVLQETQVQLLSEQLAKTQAAVEQIVQEGVQELEQRKQALQISIEQLERRRERIRTEMRTTFAGVSQDLAIRVQGFKDYLVGSLQDLTSAAEQLELTPPSEPPRLVREEYRQPDQAPTPKFAEQGFQEQIKQIRNILDQYRSLPDYYGPSWQLRRTFEPIHAERVSNWFFTQGGRGALKTMGSRLQNILIASAIISVLHTLYGNRQRTLILANTPERLGEWRRGLQDCLGISRSDFGPEQGITLFEEAPVLVQKADRLLAQKQLPLIIVDETEDQINLSMLQFPLWLAFAPDPQQMPLYQY
>NC_019738.1|WP_015185077.1|6206292_6206952_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MAIELTVCGLLFIAAYLLGSIPTGYLAGRLLKGVDIREQGSGSTGATNVLRTLGKGPALVVLLIDALKGVGAIALVNGYYALGQMPVMPATWRPWLVAATAFAALLGHSKSIWINFKGGKSVATGLGVLLAMSWSVGLGALGVFAVVLALSRIVSLGSITAAIAVPILMILFSAPLSYKLFASAAALYVVVRHRSNIQRILAGTEPQIGQALPTEVQSN
>NC_019738.1|WP_015185088.1|6220510_6221593_-|c-type-cytochrome-biogenesis-protein-CcsB
MDLVELQNKLDNTSFLVLFVTMLMYWIGAAFPTIPYLSVLSTTGMAIANLCIATLLGARWLEAGYFPLSNLYESLFFLTWGITTIHLIAENMSRSRLVGVVTAPVAMGITAFAALTLPSEMQHSEPLVPALKSNWLMMHVSVMMLSYAALMVGSLLAIAFLVVTRGENVELRGSSVGTGGYRTKNEQAARPSYRLQRNGENPQPQTPVIANHSPTLDSWQADKGAVNTAVLDVATPSASSVAEISTVATLSPVRLSLADTLDNISYRVIGLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHARITRGWQGRRPAILAATGFIVVWICYLGVNLLGKGLHSYGWFF
>NC_019738.1|WP_015185090.1|6221788_6223828_-|DUF3352-domain-containing-protein
MLKKHKQLLLLGLGAAVLLIGGGVTAYWLLVQRKPVLGDAPLGSQLIPQDALLTASISTDAAPWQQLQLYGTPETKAALNQQLTQLQNNLITANGYNYERDIQPGLSKTVMIAYLESRAPMPGASPGKAPLFGRSLLPDLIVLPMQSPTQAQQLLEKAKSQKATQFFERTYKGIPIRETHKSNAQNYSIALLGRFLVVTNNPKITERVIDTSKGGSSVAATPGYLEALPKVNSTKPFAQLYLNMPVFSAVLAANSGRNLSPEKMAEAQQIQGVATTVTLESQGMRFQGISWLKPNSTQKYNVENTTPRLPRRLPADTLLMLAGGNLRQLWEDFAQGTESNPLLPITPENLNTAFKGFLGLDFENDLLPWMGDEFSLALIPASPESLTLPENQASPPLGAGVVLMLEARDRARAEATLKQLDQVMATRYGFQVEPTKLGNQPVVSWLSPYGGVSATHGWLEGSIVFLTLGAPIADSILPEPQVPLIQTPLFQQAVPTQPNPNNGQFFLDVDRTINSSNLNLQKILPPERKLLAKAIRAIGFTGAIRDKQSTRFDLFVQLKTAIIPSPTPIPENPSQIPGTPAAPQTRPSRPSVPQISPAPSISPSVQLKTAIIPSPTPIPENPSQIPGTPAAPQTRPSRPSVPQISPAPSISPSVSPTAQTPSISPSLPPTPEASPSQSP
>NC_019738.1|WP_015185091.1|6224040_6226683_+|CHAT-domain-containing-protein
MRTQRIGLIAFLSLLATLAVDNFQFIQNPKSKIHNFQVLAQTPDARKSEADRLGKQGEEQYITKQFEASLQSWQRALDLYREIKDRQGEGAAWGNLGMNYYELRNYPKAIECFQQVLAIARELSVHQVEANSLKGLGLSYSAMGHYSKAIEYYQQILAIVQERKDRSSEGYLVKQLEMDLEEDALNNLGVVYLRLGDYPKALEYYQQNLVLVRKRKYRQAEGTALNNLGVVYLRLGDYPKALEYYQQCLVIAREIREYQQSLAIARERGDYQMEETDLDKRIELMRSTGSIQLSLWLARQAEGVALDNLAVAYLGLGDYPKAIDYTQQSLAIAKDIKDRNGEGLALGTLGLTYLSLGNYAKAIDYQQQSLAIVREVKDHQSEGTVLSNLGYALRKSGNLAAAEKTLSDGIKIWESLRASLDGNDANKVSIFEQQARTYRQLQEVLIAQNKTDAALEIAERGRARALVELVARQLSTNPTEQSPSTPPNIDQIKQIAKAQNSTFVQYSIIYDEFKVQGKQQTKESELYIWVIKPTGEVTFRSSDLKPLWQQQNATLANLVTVARESIGVRGRGLGAIARLDEADQTKRFQQLHQLLIEPIADLLPTDPNAHVVFIPQESLFLVPFPALQGKDGKYLIEKHTILTAPSIQVLELTRKQRENLPPFGKGGLTGDALVVGNPIMPSIPPAPGEKPQPLAPLPGAQEEALAIAPLLNTKAIIGKDATKSTIAQLMPKAQIIHLATHGILDDERGIGSAIALAPDLSYKEDIGTVNGLLTAEEILDMKLNADLVVLSACDTGRGKITGDGVIGLSRSLISAGVPSVLVSLWSVPDAPTAELMREFYQNLLHNPDKAQALRQAMLTTMKNHPNPKNWAAFTLIGESD
>NC_019738.1|WP_015185092.1|6226695_6227862_-|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofH
MITKTVDTILNRASSGGDLSPEDGVLLLKQTEPQAIAAIRQTADQLRQRQVGDTVTYVINRNINFTNICEQHCSFCAFRRDAGEDGAYWLNWGQIQEKTRDAVQRGATEICMQGGLNPEAKINGAFLPHYQQLVKAIKEVEPHLHLHAFSPQEVQFIADHDGISYAEVITALQEAGVGSMPGTAAEILDDNVRRILCPEKTNTATWLEIVGTAHRLGMPTTSTMLSGHIETPEQQMGHLEKLRSLQQIARDRGYLSNITEFILLPFVGQEAPKPLRRRVGRNQPVLEDALLLTAVARIFLGNWIGNHQPSWVKLGLDGATEALEWGCNDIGGTLMEEHITTMAGAKGGTCMEVETLQQAISSLGRPYQQRDTLYRYLATPQVGVREFL
>NC_019738.1|WP_015185093.1|6228626_6228953_+|hypothetical-protein
MQRTVAPLSQSKSQYSFEMSDNIYQQLGSLSSTTISLQYGPTSFLTFKVYEASEGMIQRQGGEAIALQCLIRGTVYKLTHEHLYQLSNRELSELLNHLGIQDKHFNLD
>NC_019738.1|WP_015185094.1|6229227_6229929_-|TVP38/TMEM64-family-protein
MNVKSGIFLLIVFCILVTGLAVYFLGGIDPQQLQVWLNQAGIWAPIIYIALYIVATLLILPSTPLNLTGGAIFGLWLGTLWTTIAAIIAAVVSFAFTRTVGRETIARSRRLAGPWQAMDAEMRQGGLFYMFAIRLLPMIPYGLVNFAAGLTSIRFRDYFLGTVMGTVPGVLPFVMIGSSGLQARKTGDYLPLMGALALTGLLVGGAHWYRRRRQSPQQALRETEEQTEREDIQ
>NC_019738.1|WP_015185095.1|6230678_6231968_+|glycosyltransferase
MSTNQLHSLLPVPSGSLQIPASAFTSSEGDDSLESPLRVKRSYAIDNRSIIPIGLGNSPILLSMVIPTYNESNNIQLLVQRLSQLLDNVIPGAYELIIVDDNSPDLTWEIATALMPEYPQLRVMRRIEERGLSTAVIRGWQAARGEVLGVIDADLQHPPELLLKLWGEIARGGDLAVASRNVDGGGVSDWSPIRRFLSRGAQTLGLIILPEVIGRVSDPMSGYFMVRRSCIADRTLSPLGYKILIEVIARGNVPWIGEVGYVFQERQAGESKVTAKQYVDYLRHLVRLRLSLGPIARFFRFGLVGFSGVFVDMAILYLLSDPTTLGLPLTRSKIIASEFAIINNFLWNDFWTFADISRRQPGLRQRLERLLKFNLICLSGLIINVLLLNFLFNVFGINRYVANLIAIAAVTLWNFWLNLKLSWRVTDVN
>NC_019738.1|WP_015185097.1|6233971_6234340_-|cyclic-nucleotide-binding-domain-containing-protein
MLEPAKTVSLLQKQAAPKTFSTEQVIFKEGDSGDFMYGILAGEVDLLVNDKVVETITIGEVFGAGALVGVGARTYTAIAKTDCQLAFLDRERFLFAVQETPMFALKVMKIYSERLNRLTHTL
>NC_019738.1|WP_015185098.1|6234474_6235122_-|hypothetical-protein
MRQIKRKRTAGLGLLIGAMASGLFGSFAAPVQAQDSFGNQVIQFPVDTTVEFEFKESHGAYQSSIGIVDLDTRQPVKVLFSETKPYDQFGTGQSQTRSPGQNNIGTSLDFVGTVQGGTVQNQLNEFTFQANKRYAFYLESVSPTGQTRRTVLSSSSLAAVFDGSLNSGDRGGIVGSRIAWDDDGLPQAPGKDDDFDDFVIEAGGYLIEVGCPPVS
>NC_019738.1|WP_015185099.1|6235176_6235614_-|hypothetical-protein
MNAMKSIAWVVSLSVVAGGLMVPSVQAQKVPSSFGSFSDISGTNIWNNIPPMLGSDGKFDPNLLENISRVNRESEAAFEACNVALAQIEQSAPTTRRFSRRPSTETAEVPVACRQLEQLRAEAESLRTTVEQAQRSVSRSDFASW

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Crispr_ID: NC_019738_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_24

6364351-6364433

Orphan

Consensus_repeat	Method
ATCAGCTCCAACTAACTGTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_24

>merge|NC_019738|24|6364351-6364433|CRISPRCasFinder
ATCAGCTCCAACTAACTGTGCCCCCATTAGATTGGCAAGTGTCAGGTCGGCTTCCCTCAAATCAGCTCCAACTAACAGTGCCC

>NC_019738|24|20|6364351-6364433|CRISPRCasFinder
ATCAGCTCCAACTAACTGTGCCC	CCATTAGATTGGCAAGTGTCAGGTCGGCTTCCCTCAA
ATCAGCTCCAACTAACAGTGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015185197.1\|6352693_6353008_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NC_019738.1\|WP_015185213.1\|6371140_6371491_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185208.1\|6365520_6367029_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NC_019738.1\|WP_051055805.1\|6360012_6360528_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019738.1\|WP_015185201.1\|6357487_6358288_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_019738.1\|WP_015185205.1\|6362189_6363272_-\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NC_019738.1\|WP_041781297.1\|6373748_6375188_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_019738.1\|WP_015185214.1\|6371576_6373091_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NC_019738.1\|WP_015185210.1\|6367888_6368680_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_019738.1\|WP_015185212.1\|6370207_6370885_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019738.1\|WP_041781296.1\|6364916_6365348_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_019738.1\|WP_015185209.1\|6367091_6367892_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NC_019738.1\|WP_015185199.1\|6353958_6355173_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340845
NC_019738.1\|WP_015185204.1\|6360751_6361804_-\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NC_019738.1\|WP_015185202.1\|6358305_6360012_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NC_019738.1\|WP_015185198.1\|6353086_6353698_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_015185200.1\|6355169_6356846_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_019738.1\|WP_015185211.1\|6369138_6369882_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NC_019738.1\|WP_015185215.1\|6373239_6373593_+\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|377725
NC_019738.1\|WP_015185196.1\|6352345_6352693_-\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015185197.1\|6352693_6353008_-\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	2.54225e-06
NC_019738.1\|WP_015185208.1\|6365520_6367029_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NC_019738.1\|WP_051055805.1\|6360012_6360528_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.01685e-25
NC_019738.1\|WP_015185201.1\|6357487_6358288_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	3.64715e-10
NC_019738.1\|WP_015185205.1\|6362189_6363272_-\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.133e-167
NC_019738.1\|WP_041781297.1\|6373748_6375188_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.68027e-78
NC_019738.1\|WP_015185214.1\|6371576_6373091_+\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	5.0719e-156
NC_019738.1\|WP_015185210.1\|6367888_6368680_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	5.07175e-91
NC_019738.1\|WP_015185212.1\|6370207_6370885_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.21017e-71
NC_019738.1\|WP_041781296.1\|6364916_6365348_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.99591e-40
NC_019738.1\|WP_015185209.1\|6367091_6367892_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	4.08836e-25
NC_019738.1\|WP_015185199.1\|6353958_6355173_+\|glycosyltransferase	gnl\|CDD\|340845	cd03818, GT4_ExpC-like, Rhizobium meliloti ExpC and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).	2.21132e-163
NC_019738.1\|WP_015185204.1\|6360751_6361804_-\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.60036e-165
NC_019738.1\|WP_015185202.1\|6358305_6360012_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.85279e-118
NC_019738.1\|WP_015185198.1\|6353086_6353698_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	5.64235e-28
NC_019738.1\|WP_015185200.1\|6355169_6356846_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.18327e-27
NC_019738.1\|WP_015185211.1\|6369138_6369882_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	9.69676e-14
NC_019738.1\|WP_015185215.1\|6373239_6373593_+\|DUF1257-domain-containing-protein	gnl\|CDD\|377725	pfam06868, DUF1257, Protein of unknown function (DUF1257). This family contains hypothetical proteins of unknown function that are approximately 120 residues long. Family members include eukaryotic and bacterial proteins.	5.04865e-29
NC_019738.1\|WP_015185196.1\|6352345_6352693_-\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	2.44795e-07

>NC_019738.1|WP_015185205.1|6362189_6363272_-|Fe(3+)-ABC-transporter-substrate-binding-protein
MNVTKRSVVALFSGLALLSTVGCSTEQPKADADANNATANKANAGEINLYSSRHYDTDNALYQNFTKQTGIKVNLIEGKADELIERIKSEGANSPADVLITVDAGGFWRAQKEGVLQPISSAKLESAVPANLRSPEGYWFGLAKRARVIVYNKDKVKPDQLSTYDALAQPQWKGRVCVRSSDNIYNQSLVASKIETKGVEKTEEWAKGLVRNFARPPEGNDTAQIKAVAAGQCDVAIVNHYYIGRLKDSKDAQEQKTASQVGVFFPNQNEGGTHINISGAGVTAKAPHKENAIKFVEYLATPEAQEIFANGSYEYPVASGLKPNPAVASFGDFKESNLKVVAYGEKNPEAVKLMDRSGWK
>NC_019738.1|WP_015185204.1|6360751_6361804_-|Fe(3+)-ABC-transporter-substrate-binding-protein
MKITRRVLMAAITALLVVTVGHLTQPAPGIAQEKVINLYSARHYDTDNALYESFTRKTGIKVNLVEAKAEELIERIKSEGANSPADVIVTVDAGNLWRAKEAGILQPISSRVLDTAIPANLRDPDKTWFGLSRRARVIVYNKDRVNPSQLSTYEDLANSKWKGKILVRSSSNVYNQSLVGWLLAAHSPEKTEEWVRGLVGNFARPPEGNDTAQIKAVADGVGDIAIANHYYVARLANSKKPEEKAIAQKVRVFFPNQRDRGTHVNICGAAVVKTSKNKQGAQQFIEYLASPEAQEIFAKNNYEYPVIKSVAPADVVKTFGQLKGDDKTLAAVFGKNNPDALKIMDRAGWK
>NC_019738.1|WP_051055805.1|6360012_6360528_+|pentapeptide-repeat-containing-protein
MMKPRILVPLLLLFTLCSCKGSGNEVEKLKAQLKETKKCPGCELNSVDLTGTDLTGADLAGAKLNDANLSGVKLNNANLSGAFLDNAKLNDTNLNGANLSGAGLAAANLKNADLSGANLSSAYLKGADLSGSLLNNANLKEADLSTAKLEGAKLEGANLSGAIMPDGTLKK
>NC_019738.1|WP_015185202.1|6358305_6360012_+|iron-ABC-transporter-permease
MEKPIRYAPTPSGTLSRKPVFPRVRFSGWTVLVMAIAFLISTPVLFVLSNIFTDSGEVWKHLAETVLWRYITNSFWLMMGVGCGVLVIGVGTAWLVTMCRFPGSRLFEWALLLPLAAPAYVLAYTYTDFLEFSGPVQTALRNLFGWGYGDYWFPNVRSLWGAIVMLTLVLYPYVYLLARVAFLEQSVCALEASRTLGCGPWRSFATVALPLARPSIVAGLALALMETLNDFGTVQYFGVDTFTTGIYRTWFGLGERVAATQLAAFLLLFILWLILLERWSRRRARYYQSAAAHRRLPSYQLRGIRAIGAGLACFVPLALGFLLPAVILLDMTLKNAEITLDQRFWGFARNSFILAALTAALGVAIAIVMAYGLRLRSNAAMRLSARVASMGYAVPGSVIAVGILIPIGGLDNAIDAWMRSRFGISTGLLLSGTITALVFAYLVRFLAVSFSTVEASLGKIKPSLDDAARSLGCNSTSTLVKVHIPLMWGGLLTAGMMVFVDVMKELPATLIVRPFNFDTLAVRVYNLASDERLAEAAGPALAIVAVGIIPVILLSLRITGSRRNQIDS
>NC_019738.1|WP_015185201.1|6357487_6358288_+|hypothetical-protein
MAHPRFFKDWPAPVRILIRPMWFISLGLHALLLSIPIPSQQQAESPSEKKSVKVTQLPPPASPQPSPTVQQPTPSPVVQPSTFIPVRPTPRVQPSSSLIIKPSPRLQQPQPSPTMAQNTPTPSPTPTPSPTPTLSPTPTPSPTPTPSPTPTPSPTPTPSPTPDDTLAEFPQIEGAQAGCNGLLGCWQTPETQWRYVSSNLEQKLEAKGYEVKALDLEDDTGRRVYEVSKAGEIKYYLNVLSTNRGTVYRISQEPLTREELNQAAAL
>NC_019738.1|WP_015185200.1|6355169_6356846_+|glycosyltransferase-family-4-protein
MKTAAILYQPDGFETQGQRLMGRQAAGEGFLKALARHGKAESLYCSTKDKAGFEAFSQQVRPWLSNSRPIRWLPAGNPVALAEAGTLYRPDPLISELAWQRRFANQQAYSLCGVTHTLASKGAMEGIGNLLIAPIQPWDAVICTSRAVKMMVERLLGSWAEYLAVRLGAKPAVQFRLPVIPLGIDCEAFPQGQVAQETRSQLRQKLGIGPDDLVVLFVGRLIFNAKAHPVPMYLAMERAAQATKSKVHLIQAGWFEDQQQEVAFKNTASVFSPTVNHLFVDGRQPEIRQDIWSVADVFISLADNIQETFGLTPVEAMAAGLPVVVADWDGYKDTVRHELDGFRVPTLMPPPGCGLDFAANYHDDNLNYSTYVGHISQMTAVDVDACTEALTVLLTQPEVRQRLGENGRVRAREIYDWSVVIGAYEALWEELAELRTKAKVSAPVAAEKPPHPLCDDPFHLLSHYPTQSLGQDMVLGLGAMAAPEKLQALRTSWMTNFGADKRSPTAMIDQVLEAIAKEGSIKVADILQRFAGSELGAVVYLSRTLVYLLKFDVLRQVR
>NC_019738.1|WP_015185199.1|6353958_6355173_+|glycosyltransferase
MRILFLHSNFPAQFRHLAVALAQNSNHKVVFGTTRKEGALPGVYKAIYTPSREAHPQTHHYVRSLEGAVLQGQAVYRLADQLKAQSFIPDVVYAHSGWGPSLFIKDIFPKAKLLCYFEWFYHAHGSDADFDPSEPLTADDEARIRIKNAPILIDLYSCDRGLAPTYWQRQQFPPEYHNKIKVHHDGVDTQFFQPQPGAKLFLPRINLDLREVPEIVTYVARGMEPYRGFPQLIETVALLQKRRPQCHVVIVGENRVAYGRTLPDGKTYKDVMLEKVPLDLNRVHFTGLLPYPEYLQVLQASSVHLYLTRPFVLSWSMLEALSAGCLVVASNTAPVTEMIQDGINGLLVDFFDTQAICDRIEYALDNPTQMVSIRHQARETILERYDLAQLLPQHLQWIQEITEQ
>NC_019738.1|WP_015185198.1|6353086_6353698_-|Uma2-family-endonuclease
MTVTTKKLTFEEYLTYSDGTDTRYELVNGELVAMSIGTGQQVEIIDFLYRQIDAEIGRSGHDWIVRPVAIGVRSPRAGKWDTSRIPDLTVIPTQQWRELRTREAVIELNEPPPILAIEVVSESTKIVDYRAKRVEYNVLNIPEYWVVDPLTSKVTIFTLVEELYEGTEFAGSEQIVSGTFPELVLTVEQIIWARAIPSDEENE
>NC_019738.1|WP_015185197.1|6352693_6353008_-|DUF433-domain-containing-protein
MTPGVIYPHIEKAEGQPARLQRIPRVRVAQIVMDYLAYGWSVEEMCRQHPYLTLSEAHAAMVYYFDRQDEVDNEIRLEWEQAQQAKSQASPSPFFVRMKARGLL
>NC_019738.1|WP_015185196.1|6352345_6352693_-|DUF5615-family-PIN-like-protein
MAIALYMDVHVPQAITDQLRRRGIDVLTAIEDSSAELTDEALLERASSLGRVLFTQDIRFKALAEDWQRQERPFAGLIFGHQLGGTLGQFVKDLELIALASESEEWLNVVDYLPF
>NC_019738.1|WP_041781296.1|6364916_6365348_-|NUDIX-hydrolase
MTYRNPVPTVDIIIELVDRPHRPIILIERKNPPLGWAIPGGFVDYGETVETAAVREAQEEIGLQVELIEQFHMYSDPNRDPRQHTLSVVFIATGTGEPQAADDAKNLGIFHAWDIPDQLCFDHNKILKDYWHYRHYGIRPRLS
>NC_019738.1|WP_015185208.1|6365520_6367029_+|4-alpha-glucanotransferase
MPFPRSSGILLHPTSLPSRFGIGDLGLEAYKFIDFLAQSDQQLWQILPLGPTGYGNSPYMCYSSMAGNPLLISPEKLQDQGLLTDEDFANLPEFPVDRVDYERVKQTKMPMLRKACDRFQANASEVERKQFSGFCDATASWLEDYALFMALHDTFEGTSWHTWEPEIAKAHPEAIEKWRQKLSAQIYFHQYLQFEFFRQWSELKQYANLHHIQIIGDIPIYVAHNSVDVWAHRDIFAINEQTGEAALMAGVPPDYFSEDGQLWGNPVYKWESLQQDNFRWWVQRVQATLDYVDIVRIDHFRAFESYWVVEQGETTAKNGKWVEAPGEAFFKVLQEKVGNLPIIAEDLGTITPEVLALRDRFEFPGMKILHFAFGGGPDNPYLPFNYGRNYVAYSGTHDNDTTVGWFNQLSQHEKDSLLLYLGSISPDGIQWDLIRLALSSVANQAIIPVQDLLGLGTEARMNFPSKAEGNWEWRYRPDVLTGELRDRLKTLTYIYGRAPIRS
>NC_019738.1|WP_015185209.1|6367091_6367892_-|helix-turn-helix-domain-containing-protein
MKENKHYFPQEQVEKLEELGSRLRQFRTEQSIPLEEVAAQTRIQARLLNAIEEGRLEELPEPVYIKGFIKRFADALGLNGAEFASAFPTGSSLQFVKPVWRHVPTSQLRPVHLYLLYVLLVVGAVSGLSLLVRRSALEGGVSRYEVEMQQAPKSSRPSPSAQPKPPQKLQPTKAAEVTQRSQDGKPVQVRVTLKAQSWMRIVADGKTEFEGTLPEGSNRTWVADKTLIVRAGNAGGVLVEFNNESAKQMGAPYEVQEVTFAANSNS
>NC_019738.1|WP_015185210.1|6367888_6368680_-|rRNA-pseudouridine-synthase
MEERVQKILSQWGIASRRQAEKMIEAGQVRLNGTVVHLGQKANPETDVLEVNGKLVQPNNRPQSIYLLLNKPAGVVSTCRDAHNRPTILDLLPKALSQEQGIHPVGRLDAQSTGALLLTNDGTLTFLLTHPRHHVPKTYYVWVQGHPPESVLQVWRQGVDLLGKKTLPAQVRVLQRGVEDTLLEIVLTEGRNRQIRRVAELLSYPVIHLHRTAIGPIQLEPQGGPVLPSGHYRYLNDFEIRFLNSRVHLTSVKVPADMKEYRI
>NC_019738.1|WP_015185211.1|6369138_6369882_+|DUF2993-domain-containing-protein
MDVETPTTLKSKKSRIISKVLSPAVQLWLRSQVEQVETLQFKISGGDRQILSGHIPTVSITASRAVYKGLHLSQLELEGTGIRVNLSQVIKGKPLRLLEPVPVGGQIGILASDLAASLQAPMLSNAVSEFLRTLPKSDGITDSVNDLNLKERQIRWQKVDIEEGQLTVFGTLTDALLQTTPVVIRAGLELASPQILRLNPLQIQLSPTSAPLILDNFQVDLGSEVNLQELALTPGQLLCRGRLTVLP
>NC_019738.1|WP_015185212.1|6370207_6370885_-|response-regulator-transcription-factor
MPSETPLSPDLPTESTPLRVLIVEDDPMMQLGLEQSLTVHPHITIVGQAEDGYMGVEAAKRLNPDLIVMDIGLPRLDGIAATQQIKAALPNVRVVMLTSHTTDQEIIASLSSGADAYCIKGASVDRLLKAIAAAAEGATYLDPQIGRQVLQHLTPPTPSGNIANLSQRELEVLKLIVEGYSNPEIATKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSGLV
>NC_019738.1|WP_015185213.1|6371140_6371491_+|hypothetical-protein
MQDKQKVTLYLPPGLHRQLKIRAAVDSESMSGMVERAIVFYLRHPEVVEEVEASYGNSHRVYACPECSSSVVLQDGEMVSLKNQPSILAEDIPVEKVREEVGSPTGAQGEEELVPC
>NC_019738.1|WP_015185214.1|6371576_6373091_+|AAA-family-ATPase
MQEEISILIQAQYPLIYLVTSEEERTERVIAKIAQEAKSPQRRVFIWTVTHGIVEYGQARHITQHNTVSPEAAIQWTIQQKEAGIYIFKDLHPFIDSPATTRWLRDAIASFKGTQKAIILMSPMQQVPIELEKEVVVIDYPLPELSELNQVLSHQLEQSRTRRPTTETREKLLRAALGLTHDEAEKVYRKAYVKSGRLTEGEVDIVLSEKKQLIRRNGILEYIEEDETLDAIGGLEELKRWLQQRSNAFTERAREYGLPQPKGMLILGVPGCGKSLIAKTTSRLWGLPLLRLDMGRVYDGSMVGRSEANLRNALKTAESISPAILFIDELDKSFAGSSGSSDSDGGTSSRIFGSFLTWMQEKTSPVFVMATANRVERLPGEFLRKGRFDEIFFVDLPTAEERQQIFSIHLSKRRREITRFDLDQLAKVSEGFSGAEIEQAIIAAMYEAFAQDREFTQLDIIAAIKATLPLSKTMTEQVTALRDWARQRARPAASSVAEYQRMEF
>NC_019738.1|WP_015185215.1|6373239_6373593_+|DUF1257-domain-containing-protein
MSHFSTLRTKITDAEILKASLRDLGISVKTEADVRGYNGQRVRSDIVAVLEGEYDLGWSRNSDGSFDLIADLWGVAKKHNQTELINSINQKYAVNKTLAEVKQRGLQNANVKLVLQK
>NC_019738.1|WP_041781297.1|6373748_6375188_-|N-acetylmuramoyl-L-alanine-amidase
MKFQWLLLLPSLSSIFLFSSPAEAARLLLWRFDANQNQLVFTTDDSVQPKAQLFANPNRLIIDLPGTTLGRPTMNQPVGGAIREVRVGQYNAQMTRIVVELAPGYTIDPQQVLFQGISPTQWSVQIPTPERITTTPTTTSQPVVVIPPSRTSNPANNQTETPTPTSRLATIQAVELVNEGTQLAIRADQRVRATSRWDAKANTYQIIIPNAQLAEQVRGPQLNARSLLSQVLVRQQDRRTVVILVKPSSGGQIGELNQLTDQIISLQLRPSRPVFPPTTSIPVPPPLRTTPPDSFYRVPNSRIVVMIDPGHGGKDPGAIGIGGLREKDVILPISQQVAALLQQNGVQAVMTRSDDRFISLAGRVQMARQARANVFVSIHANAISLRRPEVNGVETYYFSSQRLAEAIHSSMLQSLNVRDRRVRRSRFYVLRNNSIPAVLVEVGYVTGAEDAPRLASPAFQRQMAEAIARGILLYIRQNF

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Crispr_ID: NC_019738_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_25

6576970-6577047

Orphan

Consensus_repeat	Method
CCAGGATGTAACAACACATCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_25

>merge|NC_019738|25|6576970-6577047|CRISPRCasFinder
CCAGGATGTAACAACACATCACCAGAATTTTCATCCACGAATGCTTCGCCCTTTCCAGGATGTAACAACACATCACCA

>NC_019738|25|21|6576970-6577047|CRISPRCasFinder
CCAGGATGTAACAACACATCACCA	GAATTTTCATCCACGAATGCTTCGCCCTTT
CCAGGATGTAACAACACATCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015185377.1\|6571148_6571973_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_172642296.1\|6583056_6583530_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185387.1\|6587891_6589022_-\|kinase	unknown	unknown	gnl\|CDD\|226691
NC_019738.1\|WP_015185390.1\|6590515_6591514_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381326
NC_019738.1\|WP_015185385.1\|6585296_6585716_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185388.1\|6589026_6589383_-\|DUF565-domain-containing-protein	unknown	unknown	gnl\|CDD\|367958
NC_019738.1\|WP_015185373.1\|6566675_6567437_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NC_019738.1\|WP_041780240.1\|6582835_6583036_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185379.1\|6574470_6576477_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_019738.1\|WP_015185386.1\|6586202_6587675_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NC_019738.1\|WP_015185372.1\|6565133_6566579_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_019738.1\|WP_015185384.1\|6583725_6585174_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_019738.1\|WP_015185381.1\|6577558_6580684_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942
NC_019738.1\|WP_041781325.1\|6569559_6570753_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|180947
NC_019738.1\|WP_015185389.1\|6589970_6590189_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185371.1\|6563846_6564164_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185370.1\|6562726_6563560_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NC_019738.1\|WP_015185375.1\|6569005_6569353_+\|thioredoxin	unknown	unknown	gnl\|CDD\|181812
NC_019738.1\|WP_015185374.1\|6567869_6568640_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NC_019738.1\|WP_015185378.1\|6572142_6573948_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341073

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015185387.1\|6587891_6589022_-\|kinase	gnl\|CDD\|226691	COG4240, COG4240, Predicted kinase [General function prediction only].	1.73213e-89
NC_019738.1\|WP_015185390.1\|6590515_6591514_+\|aldo/keto-reductase	gnl\|CDD\|381326	cd19100, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	4.47222e-107
NC_019738.1\|WP_015185388.1\|6589026_6589383_-\|DUF565-domain-containing-protein	gnl\|CDD\|367958	pfam04483, DUF565, Protein of unknown function (DUF565). Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20.	1.43251e-19
NC_019738.1\|WP_015185373.1\|6566675_6567437_+\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	3.15925e-48
NC_019738.1\|WP_015185379.1\|6574470_6576477_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_019738.1\|WP_015185372.1\|6565133_6566579_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.00123962
NC_019738.1\|WP_015185386.1\|6586202_6587675_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NC_019738.1\|WP_015185378.1\|6572142_6573948_-\|oligoendopeptidase-F	gnl\|CDD\|341073	cd09610, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	2.58648e-125
NC_019738.1\|WP_041781325.1\|6569559_6570753_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|180947	PRK07366, PRK07366, LL-diaminopimelate aminotransferase.	0
NC_019738.1\|WP_015185384.1\|6583725_6585174_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_019738.1\|WP_015185370.1\|6562726_6563560_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NC_019738.1\|WP_015185375.1\|6569005_6569353_+\|thioredoxin	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	1.13161e-33
NC_019738.1\|WP_015185374.1\|6567869_6568640_+\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	8.09924e-48
NC_019738.1\|WP_015185381.1\|6577558_6580684_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.42298e-44

>NC_019738.1|WP_015185379.1|6574470_6576477_+|excinuclease-ABC-subunit-UvrC
MTTSAKTLTLVKEPERLEKRLKEIPTEPGVYLMRDSSDRILYIGKAKKLRVRVRSYFRESQKLSDRIAMMVRQVAEIEFIVTDTEAEALALEANLVKQHQPYFNVLLKDDKKYPYILITWSEEYPRIFITRNRRLAKEKDRYYGPFVDAGALRTTLRLAKRLFPMRQRPQPLFKDRPCLNYDIGRCPGVCQQLISTEEYRKTIQKIAMVFQGRNEELIDILTETMNQAAQSLNFEVAARIRDQIAGIRSLSADQKVSLPDDTVSRDAIALAANEQHACIQLFQTRAGRLVGRLGFFAEAPPLTPPTPLSKGGEQGKSSVSSPPYQGEEQPSVSSPPYQGGERGGVDPGAILQRVLEEHYQNADSVEIPTEILVQHELPEAEMLAEYLSERKGRKVTILVPQRQVKAELIEMVERNAKYELERTQRFSDRNTEAMQDLADILDLPDLPHRIEGYDISHIQGSNAVASQVVFIDGQPAKQHYRHYKIKNPEVKAGHSDDFASLAEVIRRRFRKYGDDPNLQRVGNPDWPDLVMIDGGKGQLSSVVAVLQDMNLMEDLRVVSLAKQREEIFLPGESSPLPTEAEQPGVQLLRRLRDEAHRFAVTFHRQQRSDRMRRSRLDDIPGLGFNRQKQLLAHFHSIDYIREATPQQLAEVSGIGPRLAQEIYDYFHP
>NC_019738.1|WP_015185378.1|6572142_6573948_-|oligoendopeptidase-F
MTYVSVQTQIYSPQGWDLSDIYKSFDEPKFEQDLTGLQQKVAEFQHHYRGQVSQLTPEEMARCLQQLEVLSEQYSYLDTFANLVFCANTRSSEAKQFFNDTKLALTRIYNQLLFFNLELQDLDTTQFDELQASSALQQYNHYLNRIAQFRPHRLPEEAERTRNRDMLTGRFAFVQLYSVHRGEQDYEPVATPDDKQVETPAQLEALLFHSDGDVRYEAYCSLHQEMERHNGLYGFILNAICQDHRIESQMRGYPSTFHKQLLAADVPESVFRLIMDGVSDRIDLFQRYYQLKGQAIGQKIRTCDLNTPWTADDPLLKLDYKTGVQTLLNALKPFDVFYANRASDFFSKRWVDTKVRPGKASGVFSFPTFAKHSYLSLCYTEDYHSLFTLAHQVGRGLQFSRTRDRQTYFNTQPPLLLREVASIFNKLLLFDYLLKEAADDPLRKQAVLTRMLEDQFNLLFYQSTISRLELALHERAAQGSFDHSFVNEQWLEFYRQLCGDAVEVLPEHQYDWAGMSHIFTQPFSSYQYAAASIVSLACYQQYQAVGKDFIPSYFDFLAAGSSMNPVEALRQTVGVDLEDPATVNGAFYYVEGLIDQLQAML
>NC_019738.1|WP_015185377.1|6571148_6571973_+|hypothetical-protein
MTESWIDTVTTAYEGQACVPCSPVGEVSTLTNFTAIGYAGMISATVNFNPLIVGIVGNDLNVELPLGVSVNRDFQGYVPLPSDLNQLPAGDISDGDITIDFPLISNVFGLNPDSSVLDLLDNFGITVPNSVLAILDALDITDANSVIGVFDNLFDVELAGSGTLTSVTGTTGFNFEYQGEENTFLIDGFEPTVVAGSLVGSSTITAEGDFSVDLVISEFVNLTNLLGIDLPSNVDSFLALAQVFNINQIELASGSFSLDMITVPVSAPLAGYTI
>NC_019738.1|WP_041781325.1|6569559_6570753_+|LL-diaminopimelate-aminotransferase
MQFAKRLQPLQANVFADMDQAKAKAKASGQNIIDLSLGSSDLPASEHVLEAIQESLSDNSTHGYLLFHGTQAFRQAAADWYTQRFGISVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHVGGVYLASGQIYTMPILAENNFLPVFEDIPTPVLAQSRMMVLSYPHNPTTAIAPLSFFQEAVAFCREHDLVLVHDFPYADLVFAEDTGETPNPKSLAPSILQADPDKDVSIEFFTFSKSYNMGGFRIGYAIGNAQLIRALRQVKAAVDFNQYRGILNGAIAALRGPQDSVQQSVEIFRQRRDAFVTALHKIGWQVPTPNATMYIWAKLPEPWTNDSVKFCTQLVEKTGVAASPGAGFGKAGEGYVRFALVHEPAILEMAVERMAGFLR
>NC_019738.1|WP_015185375.1|6569005_6569353_+|thioredoxin
MEGFVGNAISITDSEFETEVLKAEQPVLVYLWASWCGPCRLVSPSVDWVADTYRDRLKVFKMEVDPNPDTVKKYHVEGVPALLVFKNGEIAQSHEGAISKQKLVSLIDNHLSPAS
>NC_019738.1|WP_015185374.1|6567869_6568640_+|PspA/IM30-family-protein
MGLFDRLSRVVRANLNDMVSKAEDPEKILEQAIIDMQEDLIQLRQAVARAIATQKRTEQQYNKNQSEANNWQNRAQLALSKGDESLAREALLRKKTVAEAAATQKTMLDQQTTQVDSLKKNLIALESKISEAKTKKDMLKSRAAAAKANEQLQGTIGRLGTGSAMAAFERMEDKVLELEARSQAGYELAGNNLEEQFALLEGGSDVDDELAQMKAQLTGGSVSQQALPASEEKASPSSNAAVDAELEALRKQIDNL
>NC_019738.1|WP_015185373.1|6566675_6567437_+|PspA/IM30-family-protein
MGLMDRILRVIRANLNNLIGQAEDPEKVLEQAVEEMQQDLIQLRQAVAQAIATQKRTERQAAQAETTAQEWYNRAQLALSNGDDNLAREALTRRKSYQETAKAMRTQLTQQSAVVSKLKENMRTLESKISEAKTKKDLYIARARSAQASQKINEMLGNMGTGTAISAFERMEEKVMQLEAQSEAIAELGSTDLEKRFASLEGGNEVDSELAAMKANLMSGTESAKLPSAQTSSAQNPEVEAELKKLRSEIEGS
>NC_019738.1|WP_015185372.1|6565133_6566579_+|hypothetical-protein
MSQNTTIESTTPSLSNPSIHPVLQAALGSIDVQLEEELARYRRQRAGRPVMSPSGLGRHQIRKPLELIAVDQGTKKTQRPALGMSTAPQISFPLVMVNPSQAATSSQETSREPMDQMGERESSFSTPSDSASPLMAASGTNTDAWDGVEDVREQLTSAEKPAEEIGGLVPLGAAQSQPEDYLESSEKLLRSLDQEEVPPRSRKRLIDKVLTPLGVGSILLLLLSGATLAYIFKNPSTLSALNPNRWFGSKATTTAQQPTESAPAKTTPSENVPTIKGPNLAAEEFPEVGLNTLSHLEPSPTPTQPVVPTQPEGSGSEVTQQAPPVIPNSALPGSSSDISSALLPSPGQPETIPSTVAPLAPLPALPTGVPGANSSNSSAVNSKPSLAPTTPVTKQNSKASSAATQQAATPASAKGSFYYVLMNYSSDRDLAQAKTIVPDAYVQNVPEGKKIYMGAFKLESQAKTLVETLKKQGVNASIYHP
>NC_019738.1|WP_015185371.1|6563846_6564164_-|hypothetical-protein
MTTLNFATSACRCCRYYQPEGRRGGMCQQLSVPVRGSWKACSLAISPFEPAWRRMEAIWGNDPLGIKESLAVNCSLTVSAQNLCEEDCIAPDETLNPRPMLAEIA
>NC_019738.1|WP_015185370.1|6562726_6563560_+|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MQIEWQTAKTYEDILYHKTDGIAKITINRPHKRNAFRPKTVFELYDAFCDAREDPSIGVVLFTGAGPHTDGKYAFCSGGDQSVRGKAGYVDDEGVPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLICDLSIAADNAIFGQTGPKVGSFDGGFGASYLARVVGQKKAREIWFLCRQYTASQALEMGLVNCVVPVDQLEAEGVQWANEILAHSPIAIRCLKAAFNADCDGQAGLQELAGNATLLYYMTEEGAEGKQAFLEKRSPNFRQYPWLP
>NC_019738.1|WP_015185381.1|6577558_6580684_+|tetratricopeptide-repeat-protein
MEWEVLWFNLGLQQFQAGDYQGAMSSFDEALAINPNNHHAWIYRGVALIQLKRYEEAIFSLESAIKINPNNHHAWCNRSSALQSLGLYQEALTSSNRALELDPDCPTLWKIRGCILANAFGHYEEALNCFNCFLVFNANDSEVWRNHGTVLSHLERHEEALDSYSRALAINPNEYKTWRDQGALLQELNFYEEAIASYDNALALNSDDYKLWNNQGFLLMRLERYKEAISSYDHALLINPNVSEVWSNRGFALWKLGRYEEAISSYDYALSINPNVSEVWSNRGFALWKLGRYEEAVSSFDHALLINPNDSLVWSNRGSALDDLNRYEEAISSWDRALSLDPENTSAWYGRGNALEDLEQYEEAIASWDRALTLNPNLPECWTNRGVLLRKLGRYEEAIASFDHALSQNPNFPEAYNAWNSRGGSLADLERYEEAIPCLDRALCLTNNQMWSAWLNRGMAFFNLHSYEAALQNYNEGLQFLQPKMPGYQEGCGILNYFKGNAHYRHGQKQQNPFPYWRQAKRSYKEALDFLNEPKLRERYLEVMQNMSRTLFGLGQTQEAEELLREGTDLLQRLIQDTPSPGKKLLIARQFAGFNQLRIDELVQSGKQVEAIELAEERKNVCLSWLRYGWSDTVPSPKYQDIQKLLNSHTAAIYWHVSPAAITTFILRQNKSLKTFVLRYDQPPHLLCAETMLDNSTYAAAARKLQDLENWLTHWKQDYKDYKVQGEKRWRQEIPTRLNELSQILNIAEILPYLCGIDQLILLPHRDLHLLPLNALFPERFTIRYLPSAQVGLDQQQVQFKVVGKRLTTSVLNVENSQENLPYAAVESTAIAQLYPNTQHIRNSAVTQVAVTQALQSGAGIFHFSGHAKHDLNLPSESSLHLTHDERLTLRDIFELDMSNYNLVCLSACETGMTGKQGLIDEFVGLASGFLAAGTTNVLSSLWQVNDVSTAFLIIRFYENLRTCPTVAIALKQAQNWLRNLTSEQFERVLAQFKPQIDEIFAQLPTPRRRIAEASLRQTCDRKPHPFANPYYWAAFTATGF
>NC_019738.1|WP_041780240.1|6582835_6583036_-|hypothetical-protein
MSESFSEQDISEFGEWRQKIEEANRNNIFCYCRTCGVEWVDSSFDAVCSCGSSEVERISCWQFPDD
>NC_019738.1|WP_172642296.1|6583056_6583530_-|hypothetical-protein
MIPSVLISTAAQAQPARTPTMFENVTIGPKFSPEPMVLRGISGGSVSATQVAGRKETPTGPCVGFVDESPNHTINLKAFFNYLSLQVESPKDTTIVISGPGGTWCNDDFQGKNPGIAGQWQAGIYKVWVGSYNKNNFDPYIIKISEVRLLNPGPFRR
>NC_019738.1|WP_015185384.1|6583725_6585174_-|glutamate--tRNA-ligase
MTVRVRIAPSPTGNLHIGTARTAVFNWLFARHHGGQFILRIEDTDLERSRPEYTQNILDGLTWLGLTWDEGPFFQSKRLDLYRGAIQTLLDQGLAYYCYTTEAELNALREAQKARKEAPRYDNRHRNLTPEQRSAFEAEGRQPVIRFKIEDDREIVWNDLVRGKLTWKGRDLGGDMVIARASKQGEIGQPLYNLAVVVDDMDMKITQVIRGEDHISNTPKQILLYEALGAAVPEFAHTPLILNEKGAKLSKRDGVTSISDFKDMGFTAEALVNYMTLLGWSPPDSTQEIFTLQEAAQAFSFERVNKAGAKFDWAKLDWINSQYIHPMPASQLVDLLIPYWQKAGFEFDPVGERAWLEQLAAVIGPSLSRLPEAVEMSRMLFTESVELTAEAIEQMKKEGAAEVVQAILDTLGNYPELTAEQAQEIIKTVTKEKNVKKGLVMRSLRAALTGDVNGPDLIQSWVLLHQQGHAKARLQQALAQAA
>NC_019738.1|WP_015185385.1|6585296_6585716_-|hypothetical-protein
MRLVTTLTTALTLFAIALPGMSPVFAQESELSERWLTMGKTQKGDILSLNVNSVQTKPQAGNWLWFAYRITDGVETRERIGFTGACRRGQLVSRPVWNTEIQNKDGVLEAIEIKADAPGSLRLLRTVCSKGYSRAVPSK
>NC_019738.1|WP_015185386.1|6586202_6587675_-|glycogen-synthase-GlgA
MYIVQIASECAPVIKAGGLGDVVYGLSRELEIRGNTVELILPKYDCMRYDHIWGLHDAYRDLWVPWYGGAIHCSVYCGWVHGRLCFFIEPHSPDNFFNRGCYYGCDDDNMRFAFFSKAALEFLQKSNKRPDVIHCHDWQTGLVPVMLFENYKYEMGNQRVCYTIHNFKHQGMGGTEVLWATGLNNPSYYFQYDRLRDNFNPFALNFMKGGIVYSNAVTTVSPHHAWEARFTPIGYGLGHTLHVYQDKFTGVLNGIDHDFWNPEIDRYIPHHYTQEDLEGKAKNKKALRERLLLRDVDKPLIAFIGRLDDQKGVHLVHHAIYYALQRDAQFVLLGSATEPGINAHFQHEKRVLNDNPDVHLELGFNEELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVRGVGGLVNTVFDRDYDEKYLPEERNGYVFYDTDPYALESAMDRAIGLWYQYPEEFRKLVTQGMSYDYSWNHPGKDYLEIYERIRHK
>NC_019738.1|WP_015185387.1|6587891_6589022_-|kinase
MSQADTSLVQILNHWTAGQTPSNLEWQHLATEALKLPQWTKAFGLTPASVAELLQGRSPLENTSLSHLLPAVYTDILSLPSFHPPTKLHGEAEAISPSKILLSLVSLWLPFTLQLATLKQQLGRPVIQGILGGQGTGKTTLTEVLSVILAQLGYRTLSLSLDDLYKTYAERQQLQEQDPRLIWRGPPGTHDVDLGIELLDQLRQPNRPHPILVPRFDKSAWEGAGDRTTPEPVEGIDIVLFEGWFVGVRPINPAIFDDPTPPPIQTLADQAFARDMNQGLQDYLPLWERLDRLMLLYPTDYHLSQQWRRQAEQQMMATGKSGMTDSQIDRFVEYFWKSLHPELFITPLTKNPSYVNLVVEIDPDHTPGAIYQPSNS
>NC_019738.1|WP_015185388.1|6589026_6589383_-|DUF565-domain-containing-protein
MQNTRLNNLINGALARFGRWFANPWRHLSLVLMSLLLGTFLGSAIPATAGQAAKLDLVGAGVLILFTEMISWIVYAKSPQGRPLTENSRGLSLLTQILNAMKIGMTYSMFVEAFKLGS
>NC_019738.1|WP_015185389.1|6589970_6590189_-|hypothetical-protein
MIKNKKNLLQHKQQACPKGLKTKSIQKIREEAEQKLGTTKQEIDGRLCNLRASQELDKQVQQKLGEIGIRDL
>NC_019738.1|WP_015185390.1|6590515_6591514_+|aldo/keto-reductase
MSEKTTRRTFLTTSLAVAGGIIGCATIKQDLTSTAKDQPPTTTNLLSTGTTMQERELGKTGVSVPIFGLGGAGQTPLSWENREQDAVAIIERALELGIRYFDTAAEYGPSEDNLGKVLPPHRDKLFLASKTSKRDRDGAWRELERSLKRLNTDHLDLWQLHHVSFDQELDTIFSKNGAIQAVEEAKSQKLIRFAGITGHHEPNIIIEGLRRYNFDTILIPVNAVEIHHPRSFIPSVLPVAREKGIGVIAMKVPAYGRLFKPGVLDGMHQAMGYTLSQAGVHCCVIAAETVAQLETNVEVARAFKPLNEATLAQIEQRTVASWQDNTFYRAWT

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Crispr_ID: NC_019738_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_26

6882717-6882875

Orphan

Consensus_repeat	Method
AGGTTAGCACCGCTCAAATTCGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019738_26

>merge|NC_019738|26|6882717-6882875|CRISPRCasFinder
AGGTTAGCACCGCTCAAATTCGCCCCGCTCAAGTTAGCATTACTCAAGTCTGCATACTGGAGGTTAGCACCGCTCAAATTCGCCTGGTTGAGATTGGTATGGCTGAGGTCAGTATACTGAAGGTCTGCTTCTCGCAGGTCGGCACCACTTAAATTAGAC

>NC_019738|26|22|6882717-6882875|CRISPRCasFinder
AGGTTAGCACCGCTCAAATTCGCC	CCGCTCAAGTTAGCATTACTCAAGTCTGCATACTGG
AGGTTAGCACCGCTCAAATTCGCC	TGGTTGAGATTGGTATGGCTGAGGTCAGTATACTGAAGGTCTGCTTCTCGC
AGGTCGGCACCACTTAAATTAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_155898109.1\|6868169_6869681_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274373
NC_019738.1\|WP_015185622.1\|6877843_6878431_+\|glycine-rich-domain-containing-protein-like	unknown	unknown	gnl\|CDD\|226728
NC_019738.1\|WP_155898110.1\|6891881_6892073_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185632.1\|6897376_6898783_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341142
NC_019738.1\|WP_015185618.1\|6871280_6873791_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380492
NC_019738.1\|WP_015185620.1\|6875412_6876186_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NC_019738.1\|WP_015185625.1\|6881686_6882127_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_019738.1\|WP_015185634.1\|6900319_6900883_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019738.1\|WP_015185621.1\|6876358_6877720_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380492
NC_019738.1\|WP_041781375.1\|6878544_6879981_-\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340830
NC_019738.1\|WP_015185629.1\|6886505_6886913_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185630.1\|6888927_6889725_-\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NC_019738.1\|WP_015185633.1\|6899841_6900246_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273838
NC_019738.1\|WP_041780255.1\|6898796_6899606_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378001
NC_019738.1\|WP_015185627.1\|6884712_6885054_-\|DUF760-domain-containing-protein	unknown	unknown	gnl\|CDD\|368489
NC_019738.1\|WP_015185624.1\|6880293_6881292_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NC_019738.1\|WP_155898276.1\|6885564_6886119_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_019738.1\|WP_015185617.1\|6869702_6871085_+\|DUF1822-family-protein	unknown	unknown	gnl\|CDD\|370155
NC_019738.1\|WP_051055825.1\|6893922_6895551_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NC_019738.1\|WP_015185619.1\|6873867_6875343_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_155898109.1\|6868169_6869681_+\|hypothetical-protein	gnl\|CDD\|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	3.1889e-05
NC_019738.1\|WP_015185622.1\|6877843_6878431_+\|glycine-rich-domain-containing-protein-like	gnl\|CDD\|226728	COG4278, COG4278, Uncharacterized conserved protein [Function unknown].	2.01763e-15
NC_019738.1\|WP_015185632.1\|6897376_6898783_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341142	cd17253, RMtype1_S_Eco933I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S.Eco933I), Escherichia coli O104:H4 2009EL-2071 S subunit (S.Eco2071ORF3585P) TRD2-CR2, and Streptomyces species SirexAA-E S subunit (S.SspAAEORF2129P) TRD1-CR1 and TRD2-CR2. Escherichia coli O157:H7 EDL933 S subunit (S.Eco933I) recognizes 5'... CACNNNNNNNCTGG ... 3' and Escherichia coli O104:H4 2009EL-2071 S subunit (S.Eco2071ORF3585P) recognizes 5'... RTCANNNNNNNNGTGG ... 3'. The recognition sequence of Streptomyces species SirexAA-E S subunit (S.SspAAEORF2129P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.Eco2071ORF3585P TRD1 recognizes RTCA/TGAY and S.Eco2071ORF3585P TRD2 recognizes CCAC/GTGG. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.07948e-81
NC_019738.1\|WP_015185618.1\|6871280_6873791_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	8.73616e-69
NC_019738.1\|WP_015185620.1\|6875412_6876186_+\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	4.86448e-12
NC_019738.1\|WP_015185625.1\|6881686_6882127_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	2.25771e-35
NC_019738.1\|WP_015185634.1\|6900319_6900883_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.96249e-08
NC_019738.1\|WP_015185621.1\|6876358_6877720_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380492	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.	3.7007e-86
NC_019738.1\|WP_041781375.1\|6878544_6879981_-\|glycosyltransferase-family-1-protein	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	4.55503e-155
NC_019738.1\|WP_015185630.1\|6888927_6889725_-\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.62508e-91
NC_019738.1\|WP_015185633.1\|6899841_6900246_-\|hypothetical-protein	gnl\|CDD\|273838	TIGR01862, Nitrogenase_molybdenum-iron_protein_alpha_chain, nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase. [Central intermediary metabolism, Nitrogen fixation].	0.00252734
NC_019738.1\|WP_041780255.1\|6898796_6899606_-\|hypothetical-protein	gnl\|CDD\|378001	pfam08463, EcoEI_R_C, EcoEI R protein C-terminal. The restriction enzyme EcoEI recognizes 5'-GAGN(7)ATGC-3' and is composed of the three proteins R, M, and S. The domain described here is found at the C-terminus of the R protein (HsdR) which is required for both nuclease and ATPase activity.	0.00019331
NC_019738.1\|WP_015185627.1\|6884712_6885054_-\|DUF760-domain-containing-protein	gnl\|CDD\|368489	pfam05542, DUF760, Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.	1.65246e-32
NC_019738.1\|WP_015185624.1\|6880293_6881292_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.95328e-28
NC_019738.1\|WP_155898276.1\|6885564_6886119_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.05125e-24
NC_019738.1\|WP_015185617.1\|6869702_6871085_+\|DUF1822-family-protein	gnl\|CDD\|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	5.51466e-62
NC_019738.1\|WP_051055825.1\|6893922_6895551_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	6.33575e-39
NC_019738.1\|WP_015185619.1\|6873867_6875343_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.60198e-60

>NC_019738.1|WP_015185625.1|6881686_6882127_-|Hsp20/alpha-crystallin-family-protein
MQLIRWEPFREVDTLQRQMNRLFDSLTHTTDGENLGLAFIPPVELHETPEAIHLKLEVPGIEAKDLDVQVTADSLSISGERKEETKTEEKGVTRTEFRYGQFRRVIPLSTRIQNDQVQAEYKDGILSLTLPKAEDEKTKVVKVNIG
>NC_019738.1|WP_015185624.1|6880293_6881292_-|AEC-family-transporter
MIDSLFHAYAPLIFWSGLGFVLFRFIPERFPKLLGLALYWVGVPLQLLVLGRQTELSHGGELIPLVAVGVLLLSMGLALLSWWGLPGLSRGNTTESSPESPKNSLLDFSFSNINKLGRASLGSFILASMLGNTGFIGLALTQVLFGTENISWPVLFSVTSNVVGNYGIAVFIASYFGRSDSKNHWWIQLRDVLTVPTLWAFIIGFSTRNIELPSSLETGLEQAVWVVIAFALLLVGLRLGSVHGWRSLKRAWMPTLLKVVIVPMLVGLGATYFGLTGDSRLTLVLMSGTPTGLSVLILAEVYELDRELLASSIALSFVGLLLMLPVWLVCFG
>NC_019738.1|WP_041781375.1|6878544_6879981_-|glycosyltransferase-family-1-protein
MLKKNQDSPASVGLNQAQSSASPFHSTRPAIPGRQPIALILAHGDAATEVGAQEAGGQNVYVRQVGEALAKLGWQVDIFTRKTHPDDEPIVQHSPHCRTIRLVAGPQAFIARQELFEYMPQFVEAFQKFQSKEGTNYPLVHTNYWLSAWVGLQLQAESNIQLIHTYHSLGAVKYKALAARSPMQQIRLAVERQILEQASCVVATSPQERETLQSLVSEQGCIEMVPCGTDLENFRIIPKMEAREQLGLDPTEQIILYVGRFDPCKGIETLVRAVAMSQARVKGNVRLVMAGGSDAELGDGQERQRIEKIVQEVGLTQQTLFSGRLGHDVLPLYYAAADVCVIPSHYEPFGLVAIEAMACGTPVVASDVGGLKFTVIPEETGLLVPAQDKAAFAAAIDRILTDELWATQLKEQASVRVRQNFSWSGVAIELSNLYRRLLAQSLLDERLWSAQLPSPWGTEVSQVNVPSATPATGLTLAS
>NC_019738.1|WP_015185622.1|6877843_6878431_+|glycine-rich-domain-containing-protein-like
MLTDSISVGNQVLSSSAQTFLQKLKQLDLESIEKRLMQSGWTRQQATLAINRYKMFLSVAYLHPHIPLVPSQEIDRVWHYHILHTRKYYQDCQMLFGRFLHHEPDVEYWHQPNPVSLNTAFAQTTALLVQYFGNTALGDARLEQPDSLLISENLPQQQPLSENGDFHLHPSACGRPTSRLLETSDLRPATNCPNL
>NC_019738.1|WP_015185621.1|6876358_6877720_+|amino-acid-ABC-transporter-substrate-binding-protein
METTEAVRVKKRRIPPIFYILMVGLSLISAPRFLGTFKSGSRSGSIGNYLLISEKVTSDKKQGIEAFAKGDYQQAIASFKNSLLQQPNDPETLIYLNNAQAGNDALKIAVSVPIGSNLNVAQEILRGVATAQAEINKNGGINGQKLQVQIVNDENDPKIARKLAQDLVNDPQVLGVLGHNSSDASLAAAPIYQKKGLVMISATSSANNLSGFGSYIFRTVPAANVMAETLADYAIKTARKTKIAFCYDSQTQSNVSFKDEFLAALVSKGGQLVPTVCDLSAPNFNPSTAVTQAINSGADGLFISSHIDRIESAIALAKANQGKLALFSSPTLYTVKTLQAGQQDVKGLALAAPWHPQVNPSFAQKMTQQWRGKVSWRTATAYDATQAMIAGLQQSQNREGLQQALHSQGFSVQGASGAVRFAPSGDRISQPVIVQVQSKGVDHDFVMLPTTDP
>NC_019738.1|WP_015185620.1|6875412_6876186_+|PspA/IM30-family-protein
MKPTNSTQNNLNSPKQWLVPLVLTILTGLGFKLIWTKSGRTLMAIWNWLWGIPIESGGKIAVEAAWDSVKSMQQSVAQLAESVATAVAAYEKVKSKYAAKQQEFKQAENQALLAYKQANEEAARLAMSRAIAIERLLPKMGEQVSQAEKVVVSAKAKLHREREKLEAYQTEMQNLKALAEINEALETIAQVDSTLDINSARYQFESAQAAVEERYFKANAHAELIENPAERLQADLDHLTLNDEISRRLAQLKGERG
>NC_019738.1|WP_015185619.1|6873867_6875343_+|serine/threonine-protein-kinase
MLEEEQVLHHRYHIQRQLGQNAGRRTLLAQDLHTQELVVLKILSFSSDFRWEDLKLFEREAETLKSLSHPAIPHYLDYFELHLPNCRGFVLVQSYIDATSLQEWIKRGRTFSEDEVKQIAKALLNVLSYLHERNPPVIHRDIKPSNILLKGDRSAHQVGDLYLVDFGSVQTAVREIGTMTIVGTYGYMPPEQFSGRAFPASDLYSLGATLIYLVTGMHPSDLLQENLLLEFEPVTHLSPNFVQWLKLLTHPNRKQRLSSATVALKALEQPFVQSQLIESSTTSTPLTLQKPVDSKVSLYKDEETLEIYLPPEKLAEGVGAIGCYFLMFCFFTVMSLSWLSVSVPSGNWFVTSIGLMFFCIGIYCLCQPAFAANEHTRIHIDQKSVTVTKTAFGRRQQVFHASRNNLYKLTYVKRLYRQGSEGDIEEVSPELKIWARQIATYSGHYQDISYRIGQSVSADNKTRFYGRLTTPELDWLAQELSNWLGLPISRD
>NC_019738.1|WP_015185618.1|6871280_6873791_+|ABC-transporter-substrate-binding-protein
MSKRVIFRIDQGDFEQGFSVTLTIKENGEICAPEIKGKLAPATQIIDRYNDWQQAYYSWGQSHRWWRRRLEVPDQINTNYSSADSENNATIYASQFEGELNDWLDRSDLGELREELLHTVNRNDSVSFIVQTDNKELQRLPWELWRLLKNRYHQAEVAISSRSAPKKGALRSSVKILVILGSDDKIDIQTDWTILREKLPNDELVLVEKPRADEFREILINQPWDIIFFAGHSSTHADGNDAKIWLNEQEYLSPQKLRNSLEKAVRNGLKLAIFNSCDGLGLARQLETLQIPHIIVMREPVHDEVAQKFLNGFLTSFAEGASLHEAVREARDQLRLIENRSPNASWLPVIFQNPEEPPLFYPVEESAPELGKEPLESSGSRAKLKKIAWCGMGAIALCTLTLEIYKIIDLRKDSTLASGISLGEEILSEKNTTSEKQAGVKAFGNGNYSKAVANFKSSLEKNPNDPESRIYLNNAKTANNKQTIKIAVSVPLGSNPSIGEEILRGVAEVQEEINRDYQINGLPLQVVLANDNNDGNLAQAVARKFVKDTSIFAVIGHNASNASTAAAPIYKDGKLAMISPTSFANQLKEPSYIFRMVPQITFFAAQLSQGLGRAVPNPKVAICVDNVSPDQESFRNEFKYVVSAYKGQHIDLGCNLADPNFNPIAVVETIKKNNVNSLMVAPYVNNLPKAMELFKAVRESQLPIKMFGSPTLYNDKTIEWGGEAVEGLTLSVPYFPDEREKNSFRELWKTELNTWRSPMSKDTTRAIATGLQQLLKSPQPNRQELDNILRNSSFKVKGVTGEFKFTSNTGEREFLFQKERTDALIQVKNGKFVKIE
>NC_019738.1|WP_015185617.1|6869702_6871085_+|DUF1822-family-protein
MTLTLQTLSSLYSEHLWLELSDSDLEQAKLASQGYSNETGCNYAYLNSLCLNCFLNWLQKNLNLEVYPSAFPNEQLLPQIWEFVSGCGINWGNKRLVLIPSDAIDMADFVVSQEWVDIPTLAADYYLPIRVDLEERYLHVWGFVSRKTLKAKADYDPIYRVYYLEQDWVVPNLEVMELASNFCFDEKGDVMPLPKLSETEAKNLIEELSKPSPYSPRLKATFEKWGALLNESHWLQELYKRRVQSVSPTISALSLWLDGVLEAGWQTFEELFQSKNLAPGFRMKQVRGIELETAEKVRRAVKQLYNSQSEIIFPSHIEELDALVYLIQNTQDESLRWKAAEYLWTIAPNYPGSAMRRVMDLGVQLMGHPIALMVAVLRKLDGKVAVLLRAYPMHNRGKLPPSLRLIGLDENGASIPGLEAVARSEPQDDYISLYFSAYVGERFSVRLTLKDTSITEQFVV
>NC_019738.1|WP_155898109.1|6868169_6869681_+|hypothetical-protein
MNESKWSNRVAPVTVMPLECFYTLPDRLEEHRIIWRIEPRLRDRINELCQKIDPLAELDEKILTSRIARYLFEMLQQHPEHELLQSHWIAFLERRCEKVATRLAHFNPSYFRDLVLIGAELANHPVNFFENFDSQRSQFEYWYPTLKRFVDAKIKYLIIPKFRELTGIDTLGRTPLGLAARSTRKQVKEALHYLGYTQAELSKYLLAWQCFQEIRHSIKLGVNQFKIEHFQNVAKRYCEFRDQLALPEGHNRDINGEEIKTWLENIGIAIRKLLDPPLDSLDTSLPATTDENTSLLENIPGQLKEDEEMQQTVVAFRDFIAHLLEGLPETQEKQLLFLRYGLELKQSQMGKEFRGQAQYQISRLLQRLNQRILTQILNWVKQHLELEPSSECLKEIEVVLYQYYSDQIDVFFEKTIQVLGTQSREVLKLFYIFQLKPSGIGTRLHKSEAEVKELLEVIKQWVCSSITEKIKAEIQLELQSQGAAQKRITTVTETRLETILQLY
>NC_019738.1|WP_015185627.1|6884712_6885054_-|DUF760-domain-containing-protein
MNNLSNSGSELFDSEKERSNLLWQYVQSLHPEIVAQLSQPPLEVVQVMERNLVSMLGHLPHEHFGVTITTSREQLGRLLSSAMMSGYFLHNAQQRMVFEKSWQGAAEANEKEK
>NC_019738.1|WP_155898276.1|6885564_6886119_+|pentapeptide-repeat-containing-protein
MAQNKKYLIGLAIGLPLLAAIAGIGWLLARNAATNAQVQPPSPPVEQPITSQPPLTNPNPVVTNFKCAGLTLSGQNFSGKNLSQADCTRANLTNANLSKTNLQSSNLSKADLSNANLQGADLRGANLAEADLSNANLSGANLEGANLSKTDLRGANLNNANINRTDLTEAKLDGANVNLNGTKQ
>NC_019738.1|WP_015185629.1|6886505_6886913_-|hypothetical-protein
MPVPTLNQKQQETADRAERIQAAITTLESKIRQIMQEGEVAPKGCYVARYQARGKRAAYWYYKLQATEPIFPTKDKPSRYKHLGKAGSCAHVDSVIQVARRVQIDELQRAIDSLKQSWADLYSTKEDSGQSTRRE
>NC_019738.1|WP_015185630.1|6888927_6889725_-|3',5'-cyclic-AMP-phosphodiesterase
MTQASPLLIAQVTDIHLFANPSQELLGLPTAKSFHAVIEQLQKLLPQPNLLLLTGDLSQDGTPESYQYLQDRLKPLGIPTYWLPGNHDQPSVIAQVFNQAPISPKKSFSAGGWQFLLLSSAVSGHVYGQLSPESLAWLELQLQQNPEQPTLISFHHPPFSVHSDWLDRFSLRNADELFAIIDRHPQVRLVVFGHIHQEFERSRHGVHYLGCPSTCFQFMPKSDNFALDNTNPGFRLINLYPDGSFNTQVERVKYAYELYTGANGY
>NC_019738.1|WP_155898110.1|6891881_6892073_+|hypothetical-protein
MTAPSVDVMQFATKERFLWGYPNFDNVSWISSVTDSQRLDQACFLGVIQFCMPDKGDSVDLGI
>NC_019738.1|WP_051055825.1|6893922_6895551_-|putative-DNA-binding-domain-containing-protein
MGEDQDIEFKSADGGLPKDLWETVSAFANTDGGYIVLGVSESKGRLVISGVRNPNGAQKNFWDIHNNLQKLNAPICSNSDVQVVKVDGYSLVTIWVSRATRTQRPVYINNNPMTGTYKRNHEGDYRCTPEEVQQMLRDASNDPQDFQILEGFDLTDLDPETLKSFRQRFSSREPDHPWLALDDRNLLCQLGGWRRNRSTGTEGLTLAGLLMFGRERSLLDALPHHQLDYQEQLSENPETRWTYRLTLDGKWEPNLFNFYYRVYGRLVNDLDVPFKLDKDAVRQGETHVHEALREALVNTLIHAFHQSTRPILVIKRKEGFLFSNPGRLRIPLQRLYEGGYTDPRNPNLQRMFQMLGLGEKAGSGFQKILRAWREQQWFRPLVSEKLDLDMTLVVLPMVSLIPENVEKELREIVGNDSYCSLTELDRIVLVLAHRLGEITNTDIQCYRQEHPREIGECLKRLVRNGWLQQSGRGRGTHYNLPNQEQPDLFSLLSGSEHNASSSEHKVFSSEHKALPSEHNEPHSEHNEPRLEDSEDFQLGLAE
>NC_019738.1|WP_015185632.1|6897376_6898783_-|restriction-endonuclease-subunit-S
MSIAKANKLPNGWRWVKLEEIADKSHYALSSGPFGSNLTSAHYQNTGVPVLRGLNISDGQLSLEDLKFISEEKAKELARSEVKPGDVVVVAVGASGLAFQIPESLPRAIMSQNFNKITPDLSQVNAKYLEICLNSDIVQSQLKQEITDTVRTFLSLTKLKDVEIPLPPLAEQKRIAAIAQKADRLRRTRRYALQLSDTYLRSVFLEMFGDPIANPKGWKTKLLDEISEVQGGLQLSQKRDNLELKLPYLRVANVYRNKLDLSEIKIIGLTKEEFIRVKLQKDDILIVEGHGNAAEIGRCAVWDGSIKDCVHQNHLIRVRVNLKIVNSAYLSHYINNSGGQKYFHTSSNTTSGLNTISTGIVKQCIVPIPPLPLQEKFAQIVQKFERIRTQQREGARQAEHLFQTLLHRAFRGELTPQDSNDEPASLLLEQIGAEQAQAEAEAKAATQTMGDAAEYGGTKAKQQDTEPI
>NC_019738.1|WP_041780255.1|6898796_6899606_-|hypothetical-protein
MKNRRQRPSSFVEIDLADRIATSGYITLGEGGEQVYIEEYRQRVEGKVLEIVENHPTIAAIRNGEAVTDLQLVALERTLRQELGGGNVQLSESNIRKAFNLKVNSLLAFLRELMEIEALPDYQEVVRRNFEEFISQRQLSELESEVAPMKAERLKLLKEINRLTFENAVAPADDEPTRLALEADRQQLAQLHEQMAPLQAEINQLNRQFWVTKAQVKANKYDLSASRYRQIEQDEPFYESPQVTMERLLKLEHIMTTEMQEIMQCVKSE
>NC_019738.1|WP_015185633.1|6899841_6900246_-|hypothetical-protein
MLASSIIPIQIAALSLSILLASRQEGEHSVIAPVSVQSPAKLGLSLYERYGGSEKLRLPQALADGKRITFQDIDEILDFFENAEIDQEKPGWGNQQYPSVDWIRWLLMGGDKSWQWANTVKELARDIDEKLIGE
>NC_019738.1|WP_015185634.1|6900319_6900883_-|TniQ-family-protein
METEAPQHPPWYLEPFEGESISHYFGRFRRQEIVNISAPGSLSRKAGIGTALSRWEKFRFNPRPTQKELEAMAKLIGVEVSKLEALCPPKGVLMVTCSTRLCAVCYREAPYHRIHWQFQSTEYCEKHQLPLISRCPACDEKFPLPSEWKDGNCQRCGMKFTSMKKRQIIAKEKRAKRLGIRSDSKSV

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Crispr_ID: NC_019738_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019738_27

7016701-7016839

Orphan

Consensus_repeat	Method
CACCCGCATCAGAGGAGGATAACTACTTTCAGCAATTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019738_27

>merge|NC_019738|27|7016701-7016839|CRISPRCasFinder
CACCCGCATCAGAGGAGGATAACTACTTTCAGCAATTGCAGCAACGGGGGAAAAAGCTTAAGACAGATGCCATTACGCCAACACCTCAAGATGCTGAAGCACCCGCATCAGATGAGGATAACTACTTTCAGCAATTGCA

>NC_019738|27|23|7016701-7016839|CRISPRCasFinder
CACCCGCATCAGAGGAGGATAACTACTTTCAGCAATTGCA	GCAACGGGGGAAAAAGCTTAAGACAGATGCCATTACGCCAACACCTCAAGATGCTGAAG
CACCCGCATCAGATGAGGATAACTACTTTCAGCAATTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019738.1\|WP_015185721.1\|7013036_7013387_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185730.1\|7025111_7026170_+\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NC_019738.1\|WP_015185734.1\|7032372_7032522_+\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_041781396.1\|7007637_7008765_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019738.1\|WP_015185723.1\|7014023_7014800_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NC_019738.1\|WP_015185733.1\|7031472_7032045_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_019738.1\|WP_015185727.1\|7019986_7022191_+\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NC_019738.1\|WP_015185735.1\|7032565_7033141_-\|hypothetical-protein	unknown	unknown	unknown
NC_019738.1\|WP_015185722.1\|7013436_7013817_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NC_019738.1\|WP_015185731.1\|7026175_7028296_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_019738.1\|WP_015185726.1\|7019403_7019841_+\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NC_019738.1\|WP_015185732.1\|7028492_7031408_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_019738.1\|WP_015185719.1\|7011902_7012376_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_019738.1\|WP_015185725.1\|7017052_7017535_+\|quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|380345
NC_019738.1\|WP_015185728.1\|7022384_7023431_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|274050
NC_019738.1\|WP_015185716.1\|7009005_7009581_+\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NC_019738.1\|WP_015185714.1\|7006756_7007434_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_019738.1\|WP_015185718.1\|7011373_7011847_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_019738.1\|WP_015185720.1\|7012547_7013030_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_019738.1\|WP_015185717.1\|7009624_7011262_+\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028

Protein	Function_ID	Function_description	E-value
NC_019738.1\|WP_015185717.1\|7009624_7011262_+\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	1.78354e-53
NC_019738.1\|WP_041781396.1\|7007637_7008765_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.2387e-38
NC_019738.1\|WP_015185723.1\|7014023_7014800_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	6.99798e-77
NC_019738.1\|WP_015185733.1\|7031472_7032045_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.10171e-31
NC_019738.1\|WP_015185727.1\|7019986_7022191_+\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	0
NC_019738.1\|WP_015185722.1\|7013436_7013817_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	0.00174708
NC_019738.1\|WP_015185731.1\|7026175_7028296_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.91615e-24
NC_019738.1\|WP_015185730.1\|7025111_7026170_+\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	1.80487e-49
NC_019738.1\|WP_015185732.1\|7028492_7031408_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	8.14628e-09
NC_019738.1\|WP_015185719.1\|7011902_7012376_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	2.50123e-19
NC_019738.1\|WP_015185725.1\|7017052_7017535_+\|quercetin-2,3-dioxygenase	gnl\|CDD\|380345	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains. This family contains quercetinase (also known as quercetin 2,3-dioxygenase, 2,3QD, QDO and YxaG; EC 1.13.11.24), a mononuclear copper-dependent dioxygenase that catalyzes the cleavage of the flavonol quercetin (5,7,3',4'-tetrahydroxyflavonol) heterocyclic ring to produce 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. Bacillus subtilis quercetin 2,3-dioxygenase (QDO) is a homodimer that shows oxygenase activity with several divalent metals such as Mn2+, Co2+, Fe2+, and Cu2+, although the preferred one appears to be Mn2+. The dioxygen binds to the metal ion of the Cu-QDO-quercetin complex, yielding a Cu2+-superoxo quercetin radical intermediate, which then forms a Cu2+-alkylperoxo complex which then evolves into endoperoxide intermediate that decomposes to the product. Quercetinase is a bicupin with two tandem cupin beta-barrel domains, both of which are included in this alignment model. The pirins, which also belong to the cupin domain family, have been shown to catalyze a reaction involving quercetin and may have a function similar to that of quercetinase.	4.00248e-34
NC_019738.1\|WP_015185728.1\|7022384_7023431_+\|phage-tail-protein	gnl\|CDD\|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	3.4118e-38
NC_019738.1\|WP_015185716.1\|7009005_7009581_+\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	1.40004e-15
NC_019738.1\|WP_015185714.1\|7006756_7007434_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.89212e-63
NC_019738.1\|WP_015185718.1\|7011373_7011847_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	5.59219e-17
NC_019738.1\|WP_015185720.1\|7012547_7013030_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	4.85839e-34
NC_019738.1\|WP_015185726.1\|7019403_7019841_+\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	6.96431e-26

>NC_019738.1|WP_015185723.1|7014023_7014800_-|DUF928-domain-containing-protein
MVIQSYPRLTVVSLALSLELALSSILPAIAISPSTQQQDSQPSPQLALTQRRSRLRFKVPGIRPSRRLEGGIARGGCGVDNAKKIQMKALLPDSNIGLTTAEKPTFFVQISPTSVEEGKFLLLNAKGNEIIYEKTFPLTKTGGVTSFTLPDDADALEVGKEYTWELIVNCDPYDNVGNPRVQGSIKRLQPSQKLASDLAKASMRDRVAVYAEAGYWYNSLKTLADLRSTNPNDSTLMNDWYDLLESAGLSQVAKEPLL
>NC_019738.1|WP_015185722.1|7013436_7013817_+|phage-tail-assembly-protein
MGSESPIRTEFNFILPRGLVDAQGTVHRQGVMRLATARDEIMVQKDSLVQRDPAYGVLVMLSRVITGLGSLSSVTPELLEDLFTRDLAYLREFYNRINQQGNAYIPVECPQCSNPFSVELSLSGES
>NC_019738.1|WP_015185721.1|7013036_7013387_+|hypothetical-protein
MLQTEFEFTLPKGYLDGEGNLHRKGVMRLARAMDEIVPMRDPRVKSNPAYATVLILSRVIVRLGALEEVNPAVVEGFFACDLNYLQKFYRQINELEAETIGLPETTPPPSEPLQVS
>NC_019738.1|WP_015185720.1|7012547_7013030_+|phage-tail-protein
MPELEILTTNRFYLELKLDGSVEPVDAYFMECQGFKRTQEVIEVCEVTPQKWGKAGTTAGRVVRTKVPGNVKSNNLILRRGMTSSITLWNWFNEVEQGGWAKQRKNGDLVIYNQGSEEQARFRFLGGWPTTFKISDVKAGGKDFAIEEMELAVEEFKRVK
>NC_019738.1|WP_015185719.1|7011902_7012376_+|phage-tail-protein
MSKGEVVGCSMFYLQFDGLEDLVLKSCTGPKITLESAGDTTSYGVSKGGKSVIQATVTGVTNGTITAVYIASVEDNRLLLWHQDSHREPIAGGGSKNKGVLKTGSIILYNQAGDEAARWNLTGVMPISYKSSKFDPSSKELATETVEFAYHSILRVK
>NC_019738.1|WP_015185718.1|7011373_7011847_+|phage-tail-protein
MAELRAIPTSRFYVEFQGLEQKMVKSVTELNFKGQTAGHKTPLASTKNGMTLWQTTSSGWEQNPNFTIEVYLAEGDMDFYNWMKSTMPKSEGGDGTWSKNRRDGSIVGYDADDQEVVRWNITKAWIKSYQLADLATDKSDLVVEKFEIVCEQMNRVK
>NC_019738.1|WP_015185717.1|7009624_7011262_+|phage-tail-sheath-family-protein
MARLDYFAPGVYVEEIDRGSRPIEGIQTNIAGFVGFTEDIRGEAEVGKPMLVTSWSQYLEYFAKQGSDGYTNFNAYLPFAVNGWFLNGGGRCWIVSIGTQLPGTEPPPPEETGLKIKTSGGNRPALLFTMQPEEVANGRVDVAILPGEPIPPENPDEDPPFNTGEYFTVVLSRDGEELERYDNLTMNREAQPGVANYVATALQESQFVAVTDMSQIGQPLARRPANGRYEVSLPPIVPTPERLPQDVQGVRDDRTGIQGIFEIDEITMLACPDLMRAYEAGVLDLEQVHGIMELMISLCENSSPNPPNRMVVLDTPPDKVKPQHVVQWLNQFNRRSMFAALYYPWIKVANPRNGGRPILVPPCGHMLGVWSRTDETRGVYKAPANETPRGVIGLAYDCNFREQELLNPIGINCIRTFPNRGIRIWGARTLVEPDKTEWRYISVRRLISYIEKSIELGTQWVVFEPNDMDLWERVKRTVNNFLERLWREGALFGATPAEAFFVKCDGELNTAETMMLGRLYIEVGVCPVRPAEFVIFRISQWSPDQ
>NC_019738.1|WP_015185716.1|7009005_7009581_+|DUF4255-domain-containing-protein
MIPAVAQTLAKILAGGTSLISTEQIDFNHPSWRKNAEPGLNLYCYDLRANSQVQQLERQVESSQNPGQLPATLVNSATIWFDVSFLVSAWDYTALGEQRLLSEALMLLLQHRCLNEELLACELQGYGHLSLTVSTAHSPDTAALWSALGVPLRPALYVTVTIPITLPDTLVNSELYLQGGVLDSDPLKARL
>NC_019738.1|WP_041781396.1|7007637_7008765_-|HAMP-domain-containing-histidine-kinase
MKGRKQPLAQEEQPLSSKSSSPCTPRSLDTRHVLQQQIQQFAIALPVVATWVVYTEPDQGKRQSLVHYTPKPGSSYPDLTDLESEGWLFESLPALTLREIVTLDSVRAFGCLLNLYHSQAEYLVLWTDASLSDKEQRWAEQQAQFLMNYLVMSRECSRQHTEIQLLEQVVRRAEHQLRNPLALISLYAENLTLGSPAGPMKDQAQLIGETVHELTSSLTDLLSCGQQAKLHVAPHDLGSILQESIKGLQPWLEKKQVKIIGDETPVTLAVDRWQMKQVFDNLLSNAVYFSPQAGTVTCNWMVFRDEVLVKISDQGPGLSEEDLKQAFTPFYSRRPEGTGLGLAIAKKIILDHKGSLWVQNLSSGGAQFSFSLPRS
>NC_019738.1|WP_015185714.1|7006756_7007434_-|response-regulator-transcription-factor
MTTPQPISILLVDDDQRFRKGLQTLLDFYNNNGAFRFEIVGEAASVEQALKLAVEQHPALILLDLEIPPSDGITALLRLGELSYKGKALILSAHREDEWVFRAMQAGAHGYVFKDRIASQLCEAIATVMNHEIYLAPEVATHFFRLFHFYAGRSLQACESIHLTEREREVLHWLVQGASNEQIAEHLYITVATVKAHLTAIFEKLKVTSRTQAIVKALKLGLVCA
>NC_019738.1|WP_015185725.1|7017052_7017535_+|quercetin-2,3-dioxygenase
MTLNQQGIVMMPQEGDVLTVAGDTVTFKALGQNTQGQYALIEIACNPFVGTPPHIHSREDEAFYILEGEVEFCLDDQTILATPGTFLHSPRGQKHSFKNTGTTRSRMLCWVTPAGLEMFFAEVGRPVADPLNPPVPDQAAIDKLLATAPKYGLTILPSEA
>NC_019738.1|WP_015185726.1|7019403_7019841_+|GPW/gp25-family-protein
MQQNSPEGQKAYLGTGWASPLRVNLQGSIQLSSAERNIEESIWLILRTDLGERVYRPEFGSRLSELTFAPMNTQTLLLIRLYVQEALEMWEPRIELDEVRADPDPLRGRVDVIIEYHPKDSHDYRSLVYPFFLLPGGEQEFDRGQ
>NC_019738.1|WP_015185727.1|7019986_7022191_+|putative-baseplate-assembly-protein
MEFDFLPNLPKSNLDDRTYKDLVEECILRIPRYCPEWTNYNPSDPGVTLIELFAWLTDQMLLRFNRVPLRNYVTFLELIGVRLQASVPAQTDITFYLTSSLPEPYTIPGGTEVATVRTETEEAIVFSTDEPLTIGSPSLRHFLTAEVADEEPEVLRDRFTNLWTQRSDGEWEGRELSLFNEQPEPGNSFYLVFDPEHELAGNVLAVTFKGEAATPTGINPDAPPRRWEAWNGAYWQSVLIQETDDGTRGFSFSEIRAQGGNPLQGADLVLHLPIHWPVTRFTTYQGLWLRCVYTPASLGQPGYSSSPRIVALSVRAIGGTVAASQSSLVRNELLGESDGTPGQTFQLEGVPVLTRREDEYILIEPPGGLPQTWQEVTDFANSQGEDLHYTLDSRTGVVQFGPLIREPSQIQQQTFLRSRSYLPMGSNRSIAEEISAQDVNALERQFGAVPPRGSKIRMVAYRTGGGQKGNVQRASLTVPKSAVPYIARVINHTPARNGADAESLEEAVMRVPAMLRTRDRAVTLEDFETLTLRAGKGSVARARCLSPTSVDEAGLIRLLVVPQANTEAIARAEGIPPEFFALTPQLQSQVLSYLDERRLLGVQVRCQQPDYVGVSVQTEVALEPEYNNYRAQEDILFKLRVALYRFFNPLTGGPDGTGWPFGRPVYPSDIVTLFQKTPGVRYLGVIQLFEIRQHDQNWVRTLPLDPVINPGPQGLVCSWADNRLRSGHVINLIQ
>NC_019738.1|WP_015185728.1|7022384_7023431_+|phage-tail-protein
MTQARSGQSLYLRLTAMQFSEATPTPNLELTGTMATDTMTTGCNVLLHPGEPSEMLVQLENLGRRTLQLDLQVEGDFPSQWCQIGMEGRVLLPGQRMEAVLYFQASPDFFEDNQLQDESLILDYRSRLIAYYTPEDLAGEDASPTNRRVCESAGFNLYVRPRSLYLNFLPALYREVDFISRFLTIFEQAFEPAVQSLDVLWAYLDPLTAPQAMLPFLAHWVAWPMDPRWSLQKQRRLIRQAMEIYRWRGTRRGLRLYLHLYTDLPLDEDIPQELDKHIGIEEVFGDGFVLSTTRMGEDSIIGGGRPFHFIVTLRPDSGVQVDELLVRYIIEQEKPAFCTYELYMERGE
>NC_019738.1|WP_015185730.1|7025111_7026170_+|DUF3365-domain-containing-protein
MLTNLKLAPKFTILLSLVFISAIAISGATLSQTTLQRAEADVAYKGKILMGLMNSVRTYTNNEINPLVAPKVETSEKFIPQAIPSYSVRQVFEILRKDSAYKDYFYKDAVVNPTNSRDYVDEFEVDLVKQFREDPNLKEVSGFRNRLGEEVFYYAQPIIIKKQSCLRCHSTPEAAPKSQLATYGSEHGFNWELNKVLGSQTVYVPSEEIFAVARQNLSLVMGIFIGIFALVILLINYLLKQAVIQPIRPMARLAQKISNEQFMMEQNEEVDLASLEKVSKKSDELGQLARLFQQMAHSIYVREQSFAEQLKQLRNKSDQTKARTQARTSEMAYLKSLQEKSQTIRSKTKGSS
>NC_019738.1|WP_015185731.1|7026175_7028296_+|WD40-repeat-domain-containing-protein
MADNPISIKVSAQVLKFRPGGPPVSFEVTVDNDSDRFASFQLEVVAAGADSTPSFRWYTLSPEVSSKKPPGDSTKFLVTITDSPVPGFAGMMNLTVRVFSLELRDEERQVLRLYVQEGTGSKPLKIDLPVRKFQAAPGEQVEIPVRLLNPNQQTTDVILSFLGVESSWLLKGAEQRLQLEPGEQTEVIFSCQPPDAIALSPCQIYPFTIEATHHKGTVVRDQGTLEVLPIGYVDFSCTPQQQTIPAKGSKRFRRRTEPVTYELQFENASNLCSTASVQIQGKDWQKCNLEVIPPETELRPGETSKALLLVSKPRPRWGIREKLLLEVTAILSDRRLDLRNDSQTLELRVLPVIPLALQVLGGLLLLLLLFLLFRPFEGHTAAVSSVRFNGLADRVISGSADQTIRRWNVQGNRLKPMGVFARTGKAVRVVRFKPVNNDIVAAGLENGEIQLWDVLGNRKEPLEFFFNERDDRVLDLEFTKDSRYLFSSHGSGLILAWDLEGEASNSLTNSKSPLAKLKSDFAVYDLAVVGTGGTNLAIGGRYNRLVVWDIKSNKIRRVPYRQGDQNSYIQSLAVAGDKPNLMATADNQGNITLWDMRQCLAKDTQCEILDEWSTGHGGKPVRSVNLSKDGCYLASAGDDGREMLWPLTMDGARDLKFLNGRKLDQVPTKINDVNLILRGDDILVVSGSDDHGVRLRRVEKSNTGCK
>NC_019738.1|WP_015185732.1|7028492_7031408_+|hypothetical-protein
MARKTPDFGSIGTERQEDKGLSMADILMLPDSQRRVVQWMMRQGDCALHDVAANTEQDEGDAAIALYDLMEQGYVQEIEVDGETLYRIRLASKEGIKQLPQTIQQALAPGKPLAVIPNPSGDSSVIAGSTFELCVTVSNKGNQSALIDIYIDEVSQMLRQWCDSPFERLALSPKSTSEVVFQFQVPPQTLPGTFHYQLVVDAPQHYPEDTPIRYSQRLQILSAIEDAVTVSDPTFTVIPATSSVAPLVVQPGQPLQVTVLVDNRSDRVDRFWLSCSDLQESWFTVRYPEGLQLPGLVTASDGLDLNPGAKGEIVLLLHPPLNALAGNYFATLRLQSANHLDAVLLDVIYLQVLPVYLITVELRTLLGQVKRSAGLFEVRLTNAGNTERDIIVRTISFDEDNLCTYTLEPVEVRILPGSVGIVALEVEPTQWWRRPIYGGGRLIHFGVELEDPRLLPVPNDLPQGALLWEARPWWQFLLVLLAGVGTIAAIAFLIWWLFFRPPAPPKIVEFSSDNPAYQEAEGDFVQLNWQIRNPRQIQAIALTGQSPDGSASVKPVTYDFSKGVPNPLKEFCIIRAMLICKHVRTEARQAGDYVFELKVFSKQKKDAAVDSLKTNTVKIQSVEPPKISEFISTKPVYQEASVSSRGGVPVPAQKPGANSPSEDMILLNWKINNPEQLQELRLIARLPDGSAVSGLRPFIFSQGIPKELQEFCQLPQELICKNLPTGIRKPGDYIFELIAIPKKGEGEKPISAKTDIIKILPNIVPIKIVAFKVNGKDAGGKYLVPINPENPIKPLVLTWQVEGGKDMKVEILPAPGTVPPVGAVAYPLSQQPSSETVTLKVTSGAGQEFSRSVTFETVIPPQPEPAATPAPPTQQIPMRPPGLPTLSPTPPAPPPPSPLLLPSPTSTSQTPLPSSSPESSPSSSPAGSPSPGGSPSPSPLLSPSPLLSPGGSPSPSDPDTLSPSELPPRFD
>NC_019738.1|WP_015185733.1|7031472_7032045_-|Uma2-family-endonuclease
MVQIPTKPLTLAEFLQLPETEPASEYINGQVIQKPMPQGKHSKLQGRLVTVINNIVEKPKIALALPELRCTFGGRSIVPDIAIFTWNRIPLDEEGDIANFFAAHPDWTIEILSPDQNQTKVISNILHCLNSGCQMGWLIDPAEKSVFAYPASQQPIFLQETEQLIPTPEFMADLKLSVGELFGWLKPGNI
>NC_019738.1|WP_015185734.1|7032372_7032522_+|hypothetical-protein
MPVDEQVLEKILATHFCSTGMFDDDYDSFLKSRAKLILARAEELSQCDR
>NC_019738.1|WP_015185735.1|7032565_7033141_-|hypothetical-protein
MAKRKKHNLQWIKETLELKEDHNWESKPGTRIFVAGRGALRFDVPEDWHFEPDTKSFRFLDKKPPNDDCRLEASFNLLPPGNWAEFPLVSLLKKTIREEKRNVIERGEVIQLKRQTARIVWSQIKFIDPQENREAYSRIAIGLGSGVQCLITFDYWADDAERLIPVWETVMESLVLGLYIRDPRTGFAFPD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_019738_14	14.1\|3339636\|21\|NC_019738\|CRISPRCasFinder	3339636-3339656	21	NC_019738.1	3339681-3339701	0	1.0
NC_019738_23	23.4\|6219670\|18\|NC_019738\|CRT	6219670-6219687	18	NC_019739.1	16255-16272	1	0.944

1. spacer 14.1|3339636|21|NC_019738|CRISPRCasFinder matches to position: 3339681-3339701, mismatch: 0, identity: 1.0

cttggtcatcattggaggccg	CRISPR spacer
cttggtcatcattggaggccg	Protospacer
*********************

2. spacer 23.4|6219670|18|NC_019738|CRT matches to position: 16255-16272, mismatch: 1, identity: 0.944

atatctgatccgtcatgt	CRISPR spacer
atatctgatccgtcaggt	Protospacer
*************** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP034782	Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence	238258-238283	4	0.846
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	225315-225340	4	0.846
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	33653-33678	5	0.808
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	212160-212185	5	0.808
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP023038	Komagataeibacter saccharivorans strain CV1 plasmid unnamed2, complete sequence	63717-63742	5	0.808
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	410898-410923	5	0.808
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	4431-4456	5	0.808
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	33233-33258	5	0.808
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP021117	Rhodobacteraceae bacterium strain G7 plasmid unnamed3, complete sequence	107261-107286	5	0.808
NC_019738_10	10.3\|2916451\|35\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916451-2916485	35	NZ_AP021877	Desulfosarcina ovata strain 28bB2T plasmid Do28_1, complete sequence	130807-130841	6	0.829
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NC_017500	Lactococcus lactis plasmid pSK11P, complete sequence	44581-44613	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	40331-40363	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016748	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence	5317-5349	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_AP018500	Lactococcus lactis subsp. cremoris strain C4 plasmid pC41, complete sequence	73985-74017	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016737	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3A, complete sequence	44019-44051	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016707	Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109A, complete sequence	61773-61805	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NC_008505	Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete sequence	63158-63190	6	0.818
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016686	Lactococcus lactis subsp. cremoris strain 158 plasmid p158B, complete sequence	55585-55617	6	0.818
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP050837	Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-3, complete sequence	34794-34819	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP008843	Klebsiella michiganensis strain M1 plasmid pKOXM1B, complete sequence	27365-27390	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP024642	Klebsiella michiganensis strain F107 plasmid unnamed2, complete sequence	39604-39629	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP042547	Klebsiella michiganensis strain C52 plasmid pC52_002, complete sequence	139354-139379	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	134581-134606	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	236325-236350	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH590593	Mycobacterium phage Rabinovish, complete genome	147794-147819	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KX781992	Mycobacterium phage Gabriel, complete genome	147884-147909	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH697579	Mycobacterium phage Cane17, complete genome	152667-152692	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112554	Mycobacterium phage TinyTim, complete genome	147980-148005	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359314	Mycobacterium phage Ewok, complete genome	148500-148525	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359337	Mycobacterium phage Flabslab, complete genome	145906-145931	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN234193	Mycobacterium phage Kboogie, complete genome	148705-148730	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450432	Mycobacterium phage ValleyTerrace, complete genome	148251-148276	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH051261	Mycobacterium phage Tyke, complete genome	150116-150141	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH779502	Mycobacterium phage FudgeTart, complete genome	148096-148121	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359365	Mycobacterium phage Loanshark, complete genome	148031-148056	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359311	Mycobacterium phage SmallFry, complete genome	148868-148893	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359364	Mycobacterium phage ChickenPhender, complete genome	146917-146942	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359303	Mycobacterium phage Shnickers, complete genome	147967-147992	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH697586	Mycobacterium phage InigoMontoya, complete genome	148915-148940	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112549	Mycobacterium phage Morizzled23, complete genome	148067-148092	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112541	Mycobacterium phage Jessibeth14, complete genome	149215-149240	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359347	Mycobacterium phage Ading, complete genome	151097-151122	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450425	Mycobacterium phage Shelob, complete genome	150044-150069	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_023714	Mycobacterium phage LinStu, complete genome	147580-147605	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359358	Mycobacterium phage Essence, complete genome	148849-148874	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KJ595575	Mycobacterium phage Willis, complete genome	149174-149199	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MG812493	Mycobacterium phage NuevoMundo, complete genome	149360-149385	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359339	Mycobacterium phage Naija, complete genome	148954-148979	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359333	Mycobacterium phage JustHall, complete genome	148076-148101	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KT321476	Mycobacterium phage Zeenon, complete genome	148730-148755	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN428065	Mycobacterium phage Cactojaque, complete genome	147942-147967	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359306	Mycobacterium phage Norm, complete genome	148874-148899	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN735434	Mycobacterium phage Mangeria, complete genome	149602-149627	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JN699625	Mycobacterium phage Wally, complete genome	148235-148260	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	EU826471	Mycobacterium phage Cali, complete genome	148721-148746	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KX721255	Mycobacterium phage Yucca, complete genome	149539-149564	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359366	Mycobacterium phage Basquiat, complete genome	147219-147244	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359346	Mycobacterium phage NoodleTree, complete genome	144531-144556	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JN699013	Mycobacterium phage Pio, complete genome	150178-150203	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359361	Mycobacterium phage Darko, complete genome	148937-148962	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_023725	Mycobacterium phage Nappy, complete genome	149253-149278	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359348	Mycobacterium phage Rahel, complete genome	149392-149417	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH779498	Mycobacterium phage Bread, complete genome	147956-147981	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450427	Mycobacterium phage Adlitam, complete genome	148445-148470	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MG812494	Mycobacterium phage Pier, complete genome	149782-149807	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	GQ303262	Mycobacterium phage LRRHood, complete genome	147698-147723	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MT818423	Mycobacterium phage Janiyra, complete genome	149589-149614	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH316567	Mycobacterium phage ParkTD, complete genome	148444-148469	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	AY129337	Mycobacteriophage Bxz1, complete genome	149521-149546	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH051260	Mycobacterium phage InterFolia, complete genome	149661-149686	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KX721256	Mycobacterium phage Erdmann, complete genome	149006-149031	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359328	Mycobacterium phage EmmaElysia, complete genome	150508-150533	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KM881426	Mycobacterium phage ZygoTaiga	150643-150668	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359335	Mycobacterium phage Patter, complete genome	148911-148936	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MT889395	Mycobacterium phage Shifa, complete genome	147377-147402	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	EU826467	Mycobacterium phage Rizal, complete genome	147207-147232	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MT723944	Mycobacterium phage ChaylaJr, complete genome	148161-148186	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KR080196	Mycobacterium phage Momo, complete genome	148251-148276	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH910040	Mycobacterium phage Sauce, complete genome	148716-148741	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MF919495	Mycobacterium phage Bigswole, complete genome	149955-149980	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359318	Mycobacterium phage Specks, complete genome	149808-149833	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KF024734	Mycobacterium phage Shrimp, complete genome	149661-149686	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112548	Mycobacterium phage McWolfish, complete genome	147893-147918	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359308	Mycobacterium phage Shaqnato, complete genome	148125-148150	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112545	Mycobacterium phage Khaleesi, complete genome	148682-148707	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH825697	Mycobacterium phage Bangla1971, complete genome	148153-148178	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359338	Mycobacterium phage Amataga, complete genome	148251-148276	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359350	Mycobacterium phage Nidhogg, complete genome	149780-149805	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MT723945	Mycobacterium phage Quasimodo, complete genome	149290-149315	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359342	Mycobacterium phage ShiaLabeouf, complete genome	147903-147928	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH316561	Mycobacterium phage Derek, complete genome	149630-149655	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112533	Mycobacterium phage Bonray, complete genome	150796-150821	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450422	Mycobacterium phage RoMag, complete genome	148988-149013	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359327	Mycobacterium phage EmToTheThree, complete genome	149038-149063	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH727543	Mycobacterium phage CharlieB, complete genome	148487-148512	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JF704116	Mycobacterium phage Drazdys, complete genome	149637-149662	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359336	Mycobacterium phage Chargie21, complete genome	147219-147244	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359355	Mycobacterium phage Sprinklers, complete genome	148576-148601	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK112534	Mycobacterium phage Burrough, complete genome	149317-149342	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MF919499	Mycobacterium phage Daffodil, complete genome	148472-148497	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359334	Mycobacterium phage Delilah, complete genome	148565-148590	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_023696	Mycobacterium phage Dandelion, complete genome	151006-151031	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN276192	Mycobacterium phage Trinitium, complete genome	147541-147566	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359324	Mycobacterium phage Tortoise16, complete genome	147993-148018	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH825713	Mycobacterium phage Zalkecks, complete genome	148196-148221	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359349	Mycobacterium phage FoxtrotP1, complete genome	149592-149617	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JF704096	Mycobacterium phage Ghost, complete sequence	148865-148890	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN062707	Mycobacterium phage Grungle, complete genome	146130-146155	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359344	Mycobacterium phage Napoleon13, complete genome	147983-148008	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH727558	Mycobacterium phage Salacia, complete genome	150050-150075	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359363	Mycobacterium phage Fludd, complete genome	147725-147750	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KX831080	Mycobacterium phage Lukilu, complete genome	149707-149732	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359329	Mycobacterium phage Kamryn, complete genome	149666-149691	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JQ911768	Mycobacterium phage Ava3, complete genome	147904-147929	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_004687	Mycobacterium phage Bxz1, complete genome	149521-149546	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_011270	Mycobacterium phage Spud, complete genome	148325-148350	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN183280	Mycobacteriophage LolaVinca, complete genome	149091-149116	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359345	Mycobacterium phage QBert, complete genome	147304-147329	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	GQ303260	Mycobacterium phage ET08, complete genome	147961-147986	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH744422	Mycobacterium phage Roots515, complete genome	149726-149751	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359321	Mycobacterium phage Phusco, complete genome	148489-148514	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359362	Mycobacterium phage Atlantean, complete genome	148251-148276	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	EU826469	Mycobacterium phage ScottMcG, complete genome	147917-147942	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK310143	Mycobacterium phage Dietrick, complete genome	147493-147518	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450429	Mycobacterium phage Bipolarisk, complete genome	148172-148197	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH051266	Mycobacterium phage MikeLiesIn, complete genome	149354-149379	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_029044	Mycobacterium phage Breeniome, complete genome	147751-147776	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH669008	Mycobacterium phage Megamind, complete genome	148218-148243	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK878897	Mycobacterium phage Blackbrain, complete genome	148996-149021	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450434	Mycobacterium phage DrPhinkDaddy, complete genome	149250-149275	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359359	Mycobacterium phage Colt, complete genome	151859-151884	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MF919527	Mycobacterium phage Phox, complete genome	148099-148124	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MT818416	Mycobacterium phage BackyardAgain, complete genome	146401-146426	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359330	Mycobacterium phage Iota, complete genome	148627-148652	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KT365398	Mycobacterium phage DTDevon, complete genome	150185-150210	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KX369583	Mycobacterium phage Littleton, complete genome	149488-149513	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MF919494	Mycobacterium phage BeanWater, complete genome	147289-147314	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_028869	Mycobacterium phage HyRo, complete genome	147409-147434	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KT365400	Mycobacterium phage ErnieJ, complete genome	146641-146666	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KC691257	Mycobacterium phage Astraea, complete genome	148304-148329	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MG872839	Mycobacterium phage LifeSavor, complete genome	149479-149504	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KC748968	Mycobacterium phage Gizmo, complete genome	150923-150948	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	KC748970	Mycobacterium phage ArcherS7, complete genome	149996-150021	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359353	Mycobacterium phage BadAgartude, complete genome	148313-148338	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MH697590	Mycobacterium phage Phlegm, complete genome	149657-149682	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359317	Mycobacterium phage FrayBell, complete genome	147856-147881	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MT553335	Mycobacterium phage Ronan, complete genome	147369-147394	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN428066	Mycobacterium phage JPickles, complete genome	148052-148077	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359305	Mycobacterium phage Teardrop, complete genome	148820-148845	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	DQ398053	Mycobacteriophage Catera, complete genome	147464-147489	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MF919513	Mycobacterium phage Koguma, complete genome	148288-148313	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JN699626	Mycobacterium phage MoMoMixon, complete genome	148313-148338	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_028986	Mycobacterium phage Alice, complete sequence	146328-146353	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450424	Mycobacterium phage Melpomini, complete genome	147785-147810	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JN204348	Mycobacterium phage Sebata, complete genome	148769-148794	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MN183285	Mycobacterium phage YoungMoneyMata, complete genome	149366-149391	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK450423	Mycobacterium phage Stubby, complete genome	146296-146321	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MF919493	Mycobacterium phage Audrick, complete genome	148141-148166	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	NC_008207	Mycobacterium phage Catera, complete genome	147464-147489	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	JN624850	Mycobacterium phage Pleione, complete genome	148910-148935	6	0.769
NC_019738_11	11.1\|2962699\|26\|NC_019738\|CRISPRCasFinder	2962699-2962724	26	MK359326	Mycobacterium phage Pivoine, complete genome	148954-148979	6	0.769
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NC_019431	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence	5315-5347	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP043526	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence	1128-1160	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	24174-24206	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP031540	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence	5317-5349	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	5283-5315	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016702	Lactococcus lactis subsp. lactis strain 275 plasmid p275D, complete sequence	51643-51675	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016729	Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence	5317-5349	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP051521	Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence	33928-33960	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016685	Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence	5316-5348	7	0.788
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NZ_CP016734	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06A, complete sequence	5283-5315	7	0.788
NC_019738_25	25.1\|6576994\|30\|NC_019738\|CRISPRCasFinder	6576994-6577023	30	NZ_CP032687	Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence	555875-555904	7	0.767
NC_019738_25	25.1\|6576994\|30\|NC_019738\|CRISPRCasFinder	6576994-6577023	30	NZ_CP032692	Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence	484439-484468	7	0.767
NC_019738_25	25.1\|6576994\|30\|NC_019738\|CRISPRCasFinder	6576994-6577023	30	NZ_CP045296	Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence	205119-205148	7	0.767
NC_019738_25	25.1\|6576994\|30\|NC_019738\|CRISPRCasFinder	6576994-6577023	30	NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	526379-526408	7	0.767
NC_019738_25	25.1\|6576994\|30\|NC_019738\|CRISPRCasFinder	6576994-6577023	30	NZ_CP032696	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence	528349-528378	7	0.767
NC_019738_7	7.1\|2087118\|32\|NC_019738\|PILER-CR,CRT	2087118-2087149	32	NZ_CP020081	Vibrio campbellii strain 20130629003S01 plasmid pVCGX4, complete sequence	47789-47820	8	0.75
NC_019738_7	7.1\|2087118\|32\|NC_019738\|PILER-CR,CRT	2087118-2087149	32	NZ_CP019297	Vibrio campbellii strain LMB29 plasmid pLMB99, complete sequence	22406-22437	8	0.75
NC_019738_9	9.2\|2818523\|31\|NC_019738\|CRISPRCasFinder	2818523-2818553	31	NC_018265	Melissococcus plutonius DAT561 plasmid 1, complete sequence	29749-29779	8	0.742
NC_019738_9	9.2\|2818523\|31\|NC_019738\|CRISPRCasFinder	2818523-2818553	31	NZ_CP006684	Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence	158011-158041	8	0.742
NC_019738_9	9.2\|2818523\|31\|NC_019738\|CRISPRCasFinder	2818523-2818553	31	NZ_AP021886	Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence	158010-158040	8	0.742
NC_019738_9	9.2\|2818523\|31\|NC_019738\|CRISPRCasFinder	2818523-2818553	31	NZ_AP018525	Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence	157830-157860	8	0.742
NC_019738_10	10.7\|2916742\|33\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916742-2916774	33	NC_019928	Helicobacter phage KHP30 DNA, complete genome	19551-19583	8	0.758
NC_019738_9	9.2\|2818523\|31\|NC_019738\|CRISPRCasFinder	2818523-2818553	31	NC_021575	Anabaena variabilis ATCC 29413 plasmid D, complete sequence	10022-10052	9	0.71
NC_019738_9	9.2\|2818523\|31\|NC_019738\|CRISPRCasFinder	2818523-2818553	31	NZ_CP047246	Trichormus variabilis 0441 plasmid unnamed4, complete sequence	26018-26048	9	0.71
NC_019738_17	17.1\|3859495\|34\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	3859495-3859528	34	MN855619	Siphoviridae sp. isolate 157, complete genome	249-282	9	0.735
NC_019738_17	17.1\|3859495\|34\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	3859495-3859528	34	MF098558	Pseudoalteromonas phage KB12-38, partial genome	57693-57726	10	0.706
NC_019738_10	10.6\|2916670\|35\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916670-2916704	35	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	97148-97182	11	0.686
NC_019738_10	10.4\|2916523\|34\|NC_019738\|PILER-CR,CRISPRCasFinder,CRT	2916523-2916556	34	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1427438-1427471	12	0.647

1. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP034782 (Pseudomonas sp. MPC6 plasmid pMPC6-328K, complete sequence) position: , mismatch: 4, identity: 0.846

ccatgcccagcatcatcagctgcatt	CRISPR spacer
aaacgcccagcatcttcagctgcatt	Protospacer
  *.********** ***********

2. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 4, identity: 0.846

ccatgcccagcatcatcagctgcatt	CRISPR spacer
cgatgcccagcatcatcaggtgcagg	Protospacer
* ***************** ****

3. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggttgcccagcatcatcatctgcata	Protospacer
   *************** ******

4. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggttgcccagcatcatcatctgcata	Protospacer
   *************** ******

5. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP023038 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggttgcccagcatcatcatctgcata	Protospacer
   *************** ******

6. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ccatgcgcagcatcatcagcggctgg	Protospacer
****** ************* **

7. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ccatgcgcagcatcatcagcggctgg	Protospacer
****** ************* **

8. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ccatgcccaggatcaccagctgcggc	Protospacer
********** ****.*******. .

9. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP021117 (Rhodobacteraceae bacterium strain G7 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

ccatgcccagcatcatcagctgcatt	CRISPR spacer
tcatgcccagcatcaccagcggcaac	Protospacer
.**************.**** *** .

10. spacer 10.3|2916451|35|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021877 (Desulfosarcina ovata strain 28bB2T plasmid Do28_1, complete sequence) position: , mismatch: 6, identity: 0.829

ttcaaaccattgaagacttggtaaaaaaggttatc---	CRISPR spacer
ttcaaaccattgaagactaagtaaaa---gttgtcccg	Protospacer
****************** .******   ***.**

11. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NC_017500 (Lactococcus lactis plasmid pSK11P, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

12. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

13. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016748 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

14. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018500 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC41, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

15. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016737 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3A, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

16. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016707 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109A, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

17. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NC_008505 (Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

18. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016686 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158B, complete sequence) position: , mismatch: 6, identity: 0.818

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggaattgcaaga	Protospacer
 .**. ** **********************.*

19. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP050837 (Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-3, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
tgatgcccagcatcagcagctgctcc	Protospacer
. ************* ******* ..

20. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP008843 (Klebsiella michiganensis strain M1 plasmid pKOXM1B, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
tgatgcccagcatcagcagctgctcc	Protospacer
. ************* ******* ..

21. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP024642 (Klebsiella michiganensis strain F107 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
tgatgcccagcatcagcagctgctcc	Protospacer
. ************* ******* ..

22. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP042547 (Klebsiella michiganensis strain C52 plasmid pC52_002, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
tgatgcccagcatcagcagctgctcc	Protospacer
. ************* ******* ..

23. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP014598 (Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
aggtgcccagcatcatcagcggcaga	Protospacer
  .***************** ***

24. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
tgatgcccagcatcagcagctgctcc	Protospacer
. ************* ******* ..

25. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH590593 (Mycobacterium phage Rabinovish, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

26. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KX781992 (Mycobacterium phage Gabriel, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

27. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH697579 (Mycobacterium phage Cane17, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

28. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112554 (Mycobacterium phage TinyTim, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

29. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359314 (Mycobacterium phage Ewok, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

30. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359337 (Mycobacterium phage Flabslab, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

31. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN234193 (Mycobacterium phage Kboogie, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

32. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450432 (Mycobacterium phage ValleyTerrace, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

33. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH051261 (Mycobacterium phage Tyke, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

34. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH779502 (Mycobacterium phage FudgeTart, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

35. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359365 (Mycobacterium phage Loanshark, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

36. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359311 (Mycobacterium phage SmallFry, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

37. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359364 (Mycobacterium phage ChickenPhender, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

38. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359303 (Mycobacterium phage Shnickers, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

39. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH697586 (Mycobacterium phage InigoMontoya, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

40. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112549 (Mycobacterium phage Morizzled23, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

41. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112541 (Mycobacterium phage Jessibeth14, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

42. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359347 (Mycobacterium phage Ading, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

43. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450425 (Mycobacterium phage Shelob, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

44. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_023714 (Mycobacterium phage LinStu, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

45. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359358 (Mycobacterium phage Essence, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

46. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KJ595575 (Mycobacterium phage Willis, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

47. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MG812493 (Mycobacterium phage NuevoMundo, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

48. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359339 (Mycobacterium phage Naija, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

49. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359333 (Mycobacterium phage JustHall, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

50. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KT321476 (Mycobacterium phage Zeenon, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

51. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN428065 (Mycobacterium phage Cactojaque, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

52. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359306 (Mycobacterium phage Norm, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

53. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN735434 (Mycobacterium phage Mangeria, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

54. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JN699625 (Mycobacterium phage Wally, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

55. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to EU826471 (Mycobacterium phage Cali, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

56. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KX721255 (Mycobacterium phage Yucca, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

57. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359366 (Mycobacterium phage Basquiat, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

58. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359346 (Mycobacterium phage NoodleTree, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

59. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JN699013 (Mycobacterium phage Pio, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

60. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359361 (Mycobacterium phage Darko, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

61. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_023725 (Mycobacterium phage Nappy, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

62. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359348 (Mycobacterium phage Rahel, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

63. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH779498 (Mycobacterium phage Bread, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

64. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450427 (Mycobacterium phage Adlitam, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

65. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MG812494 (Mycobacterium phage Pier, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

66. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to GQ303262 (Mycobacterium phage LRRHood, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

67. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MT818423 (Mycobacterium phage Janiyra, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

68. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH316567 (Mycobacterium phage ParkTD, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

69. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to AY129337 (Mycobacteriophage Bxz1, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

70. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH051260 (Mycobacterium phage InterFolia, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

71. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KX721256 (Mycobacterium phage Erdmann, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

72. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359328 (Mycobacterium phage EmmaElysia, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

73. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KM881426 (Mycobacterium phage ZygoTaiga) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

74. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359335 (Mycobacterium phage Patter, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

75. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MT889395 (Mycobacterium phage Shifa, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

76. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to EU826467 (Mycobacterium phage Rizal, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

77. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MT723944 (Mycobacterium phage ChaylaJr, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

78. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KR080196 (Mycobacterium phage Momo, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

79. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH910040 (Mycobacterium phage Sauce, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

80. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MF919495 (Mycobacterium phage Bigswole, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

81. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359318 (Mycobacterium phage Specks, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

82. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KF024734 (Mycobacterium phage Shrimp, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

83. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112548 (Mycobacterium phage McWolfish, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

84. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359308 (Mycobacterium phage Shaqnato, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

85. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112545 (Mycobacterium phage Khaleesi, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

86. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH825697 (Mycobacterium phage Bangla1971, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

87. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359338 (Mycobacterium phage Amataga, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

88. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359350 (Mycobacterium phage Nidhogg, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

89. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MT723945 (Mycobacterium phage Quasimodo, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

90. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359342 (Mycobacterium phage ShiaLabeouf, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

91. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH316561 (Mycobacterium phage Derek, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

92. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112533 (Mycobacterium phage Bonray, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

93. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450422 (Mycobacterium phage RoMag, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

94. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359327 (Mycobacterium phage EmToTheThree, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

95. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH727543 (Mycobacterium phage CharlieB, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

96. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JF704116 (Mycobacterium phage Drazdys, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

97. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359336 (Mycobacterium phage Chargie21, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

98. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359355 (Mycobacterium phage Sprinklers, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

99. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK112534 (Mycobacterium phage Burrough, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

100. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MF919499 (Mycobacterium phage Daffodil, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

101. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359334 (Mycobacterium phage Delilah, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

102. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_023696 (Mycobacterium phage Dandelion, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

103. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN276192 (Mycobacterium phage Trinitium, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

104. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359324 (Mycobacterium phage Tortoise16, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

105. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH825713 (Mycobacterium phage Zalkecks, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

106. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359349 (Mycobacterium phage FoxtrotP1, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

107. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JF704096 (Mycobacterium phage Ghost, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

108. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN062707 (Mycobacterium phage Grungle, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

109. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359344 (Mycobacterium phage Napoleon13, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

110. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH727558 (Mycobacterium phage Salacia, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

111. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359363 (Mycobacterium phage Fludd, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

112. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KX831080 (Mycobacterium phage Lukilu, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

113. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359329 (Mycobacterium phage Kamryn, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

114. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JQ911768 (Mycobacterium phage Ava3, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

115. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_004687 (Mycobacterium phage Bxz1, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

116. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_011270 (Mycobacterium phage Spud, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

117. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN183280 (Mycobacteriophage LolaVinca, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

118. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359345 (Mycobacterium phage QBert, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

119. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to GQ303260 (Mycobacterium phage ET08, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

120. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH744422 (Mycobacterium phage Roots515, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

121. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359321 (Mycobacterium phage Phusco, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

122. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359362 (Mycobacterium phage Atlantean, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

123. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to EU826469 (Mycobacterium phage ScottMcG, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

124. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK310143 (Mycobacterium phage Dietrick, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

125. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450429 (Mycobacterium phage Bipolarisk, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

126. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH051266 (Mycobacterium phage MikeLiesIn, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

127. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_029044 (Mycobacterium phage Breeniome, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

128. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH669008 (Mycobacterium phage Megamind, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

129. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK878897 (Mycobacterium phage Blackbrain, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

130. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450434 (Mycobacterium phage DrPhinkDaddy, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

131. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359359 (Mycobacterium phage Colt, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

132. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MF919527 (Mycobacterium phage Phox, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

133. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MT818416 (Mycobacterium phage BackyardAgain, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

134. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359330 (Mycobacterium phage Iota, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

135. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KT365398 (Mycobacterium phage DTDevon, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

136. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KX369583 (Mycobacterium phage Littleton, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

137. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MF919494 (Mycobacterium phage BeanWater, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

138. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_028869 (Mycobacterium phage HyRo, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

139. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KT365400 (Mycobacterium phage ErnieJ, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

140. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KC691257 (Mycobacterium phage Astraea, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

141. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MG872839 (Mycobacterium phage LifeSavor, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

142. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KC748968 (Mycobacterium phage Gizmo, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

143. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to KC748970 (Mycobacterium phage ArcherS7, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

144. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359353 (Mycobacterium phage BadAgartude, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

145. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MH697590 (Mycobacterium phage Phlegm, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

146. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359317 (Mycobacterium phage FrayBell, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

147. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MT553335 (Mycobacterium phage Ronan, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

148. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN428066 (Mycobacterium phage JPickles, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

149. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359305 (Mycobacterium phage Teardrop, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

150. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to DQ398053 (Mycobacteriophage Catera, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

151. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MF919513 (Mycobacterium phage Koguma, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

152. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JN699626 (Mycobacterium phage MoMoMixon, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

153. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_028986 (Mycobacterium phage Alice, complete sequence) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

154. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450424 (Mycobacterium phage Melpomini, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

155. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JN204348 (Mycobacterium phage Sebata, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

156. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MN183285 (Mycobacterium phage YoungMoneyMata, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

157. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK450423 (Mycobacterium phage Stubby, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

158. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MF919493 (Mycobacterium phage Audrick, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

159. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to NC_008207 (Mycobacterium phage Catera, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

160. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to JN624850 (Mycobacterium phage Pleione, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

161. spacer 11.1|2962699|26|NC_019738|CRISPRCasFinder matches to MK359326 (Mycobacterium phage Pivoine, complete genome) position: , mismatch: 6, identity: 0.769

ccatgcccagcatcatcagctgcatt	CRISPR spacer
ggatgcccagcatcatcagcagctcg	Protospacer
  ****************** ** .

162. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NC_019431 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacagaggaattgcaaga	Protospacer
 .**. ** **********.***********.*

163. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043526 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggagttgcaaga	Protospacer
 .**. ** ***************.******.*

164. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggagttgcaaga	Protospacer
 .**. ** ***************.******.*

165. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031540 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacagaggaattgcaaga	Protospacer
 .**. ** **********.***********.*

166. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggagttgcaaga	Protospacer
 .**. ** ***************.******.*

167. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016702 (Lactococcus lactis subsp. lactis strain 275 plasmid p275D, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacagaggaattgcaaga	Protospacer
 .**. ** **********.***********.*

168. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016729 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacagaggaattgcaaga	Protospacer
 .**. ** **********.***********.*

169. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051521 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF75, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacagaggaattgcaaga	Protospacer
 .**. ** **********.***********.*

170. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016685 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158A, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacagaggaattgcaaga	Protospacer
 .**. ** **********.***********.*

171. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016734 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06A, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
tgaagccacgcaaaacacaaaggagttgcaaga	Protospacer
 .**. ** ***************.******.*

172. spacer 25.1|6576994|30|NC_019738|CRISPRCasFinder matches to NZ_CP032687 (Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence) position: , mismatch: 7, identity: 0.767

---gaattttcatccacgaatgcttcgcccttt	CRISPR spacer
ccggga---tcatccacgaaagcatcgcccttg	Protospacer
   *.*   *********** ** ********

173. spacer 25.1|6576994|30|NC_019738|CRISPRCasFinder matches to NZ_CP032692 (Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence) position: , mismatch: 7, identity: 0.767

---gaattttcatccacgaatgcttcgcccttt	CRISPR spacer
ccggga---tcatccacgaaagcatcgcccttg	Protospacer
   *.*   *********** ** ********

174. spacer 25.1|6576994|30|NC_019738|CRISPRCasFinder matches to NZ_CP045296 (Paenibacillus cellulositrophicus strain KACC 16577 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gaattttcatccacgaatgcttcgcccttt	CRISPR spacer
gacagctcgtccacgaatgcttcgcccaat	Protospacer
**   .**.******************  *

175. spacer 25.1|6576994|30|NC_019738|CRISPRCasFinder matches to NC_020061 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence) position: , mismatch: 7, identity: 0.767

---gaattttcatccacgaatgcttcgcccttt	CRISPR spacer
ccggga---tcatccacgaaagcatcgcccttg	Protospacer
   *.*   *********** ** ********

176. spacer 25.1|6576994|30|NC_019738|CRISPRCasFinder matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 7, identity: 0.767

---gaattttcatccacgaatgcttcgcccttt	CRISPR spacer
ccggga---tcatccacgaaagcatcgcccttg	Protospacer
   *.*   *********** ** ********

177. spacer 7.1|2087118|32|NC_019738|PILER-CR,CRT matches to NZ_CP020081 (Vibrio campbellii strain 20130629003S01 plasmid pVCGX4, complete sequence) position: , mismatch: 8, identity: 0.75

atgaggcattgaagtctgagaacgccgatttt	CRISPR spacer
aagaggaattgaagtctaagaacgctatcgtt	Protospacer
* **** **********.*******.. . **

178. spacer 7.1|2087118|32|NC_019738|PILER-CR,CRT matches to NZ_CP019297 (Vibrio campbellii strain LMB29 plasmid pLMB99, complete sequence) position: , mismatch: 8, identity: 0.75

atgaggcattgaagtctgagaacgccgatttt	CRISPR spacer
aagaggaattgaagtctaagaacgctatcgtt	Protospacer
* **** **********.*******.. . **

179. spacer 9.2|2818523|31|NC_019738|CRISPRCasFinder matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.742

catacataagttgggtttaatttttccaatg	CRISPR spacer
tatatataagtttggtttaattttataaaat	Protospacer
.***.******* *********** . **

180. spacer 9.2|2818523|31|NC_019738|CRISPRCasFinder matches to NZ_CP006684 (Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence) position: , mismatch: 8, identity: 0.742

catacataagttgggtttaatttttccaatg	CRISPR spacer
tatatataagtttggtttaattttataaaat	Protospacer
.***.******* *********** . **

181. spacer 9.2|2818523|31|NC_019738|CRISPRCasFinder matches to NZ_AP021886 (Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence) position: , mismatch: 8, identity: 0.742

catacataagttgggtttaatttttccaatg	CRISPR spacer
tatatataagtttggtttaattttataaaat	Protospacer
.***.******* *********** . **

182. spacer 9.2|2818523|31|NC_019738|CRISPRCasFinder matches to NZ_AP018525 (Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence) position: , mismatch: 8, identity: 0.742

catacataagttgggtttaatttttccaatg	CRISPR spacer
tatatataagtttggtttaattttataaaat	Protospacer
.***.******* *********** . **

183. spacer 10.7|2916742|33|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NC_019928 (Helicobacter phage KHP30 DNA, complete genome) position: , mismatch: 8, identity: 0.758

aaaaaacaagcaaaacacaaaggaattgcaaaa	CRISPR spacer
gcaaaacaagcaaaacaataaggaattactgag	Protospacer
. ***************  ********.* .*.

184. spacer 9.2|2818523|31|NC_019738|CRISPRCasFinder matches to NC_021575 (Anabaena variabilis ATCC 29413 plasmid D, complete sequence) position: , mismatch: 9, identity: 0.71

catacataagttgggtttaatttttccaatg	CRISPR spacer
gtccaataatttggatttaatttttccaaaa	Protospacer
  .  **** ****.************** .

185. spacer 9.2|2818523|31|NC_019738|CRISPRCasFinder matches to NZ_CP047246 (Trichormus variabilis 0441 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

catacataagttgggtttaatttttccaatg	CRISPR spacer
gtccaataatttggatttaatttttccaaaa	Protospacer
  .  **** ****.************** .

186. spacer 17.1|3859495|34|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to MN855619 (Siphoviridae sp. isolate 157, complete genome) position: , mismatch: 9, identity: 0.735

aaaggaaagcatcatgattaccaagcagaaaaga	CRISPR spacer
ggatataaatatcatgtttaccaaccagaaaaga	Protospacer
..* . **..****** ******* *********

187. spacer 17.1|3859495|34|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to MF098558 (Pseudoalteromonas phage KB12-38, partial genome) position: , mismatch: 10, identity: 0.706

aaaggaaagcatcatgattaccaagcagaaaaga	CRISPR spacer
tattccttgcatcatgagtaccaagcagaaaaag	Protospacer
 *      ********* **************..

188. spacer 10.6|2916670|35|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.686

ggctgctcggaccagatatcggcgaca----tactacaa	CRISPR spacer
acctgtttggaccagatatcggcgacaagggcatc----	Protospacer
. ***.*.*******************    .*..

189. spacer 10.4|2916523|34|NC_019738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 12, identity: 0.647

tgccagttgatgccggtggctcgtgccacctcat	CRISPR spacer
aatggtcggacgccggtggctcgtgccagctctc	Protospacer
 .. . . **.***************** *** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

881970 : 964741

Bacillus_phage(16.67%)

tRNA,protease,transposase,integrase

attL 927370:927386|attR 955386:955402

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015180848.1\|881970_884454_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	2.6e-132	39.9
WP_015180849.1\|885204_888522_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015180851.1\|889636_894157_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015180852.1\|894363_897021_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	1.2e-61	35.7
WP_015180853.1\|897280_899077_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	7.2e-92	39.3
WP_015180854.1\|900404_900608_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_015180855.1\|901045_902017_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.2e-20	35.5
WP_015180856.1\|902052_902751_-	hypothetical protein	NA	NA	NA	NA
WP_015180857.1\|903080_904004_-	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA
WP_015180858.1\|904158_905172_+	AEC family transporter	NA	NA	NA	NA
WP_015180859.1\|905347_905572_-	hypothetical protein	NA	NA	NA	NA
WP_041779885.1\|905791_905983_+	hypothetical protein	NA	NA	NA	NA
WP_015180860.1\|906316_907306_-	hypothetical protein	NA	NA	NA	NA
WP_015180861.1\|907535_907871_-	XisI protein	NA	NA	NA	NA
WP_041779886.1\|908043_908964_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.5e-29	33.2
WP_015180863.1\|909307_909838_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_015180864.1\|909983_911447_+	MFS transporter	NA	NA	NA	NA
WP_015180865.1\|911771_912830_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015180866.1\|913340_915632_+	amylo-alpha-1,6-glucosidase	NA	NA	NA	NA
WP_172642222.1\|915733_916651_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_015180868.1\|916825_917497_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_015180869.1\|917604_918171_+	phycobiliprotein lyase	NA	NA	NA	NA
WP_015180870.1\|918269_920906_-	alkaline phosphatase D family protein	NA	NA	NA	NA
WP_015180871.1\|921119_922811_+	PGAP1-like protein	NA	NA	NA	NA
WP_015180872.1\|922972_923176_+	ChaB family protein	M1J491	Spodoptera_littoralis_nuclear_polyhedrosis_virus	1.3e-10	63.3
WP_041780431.1\|923322_924012_-	hypothetical protein	NA	NA	NA	NA
WP_015180874.1\|924511_925390_+	OmpA family protein	NA	NA	NA	NA
WP_015180875.1\|925451_926459_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.6e-08	30.8
WP_041780432.1\|926449_926821_-	hypothetical protein	NA	NA	NA	NA
927370:927386	attL	NA	NA	NA	NA
WP_015180877.1\|927437_927887_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015180878.1\|928265_928511_+	photosystem I iron-sulfur center protein PsaC	C7EDU4	uncultured_marine_virus	1.2e-21	91.4
WP_015180879.1\|928730_930629_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.3e-112	40.1
WP_015180880.1\|930870_931689_+\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_015180881.1\|931717_933955_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_015180882.1\|933941_935648_+	ATP-binding protein	NA	NA	NA	NA
WP_015180883.1\|935652_937545_+	TniQ family protein	NA	NA	NA	NA
WP_041780433.1\|938208_939090_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.1e-37	32.9
WP_155897921.1\|939339_939957_+	hypothetical protein	NA	NA	NA	NA
WP_155897922.1\|940340_941003_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_041779890.1\|941118_941304_-	hypothetical protein	NA	NA	NA	NA
WP_015180888.1\|943243_943600_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_015180889.1\|943657_943966_-	hypothetical protein	NA	NA	NA	NA
WP_015180890.1\|943984_944383_-	hypothetical protein	NA	NA	NA	NA
WP_015180891.1\|944385_946005_-	serine/threonine protein kinase	A0A1V0SDC3	Indivirus	5.5e-22	29.1
WP_015180892.1\|945997_948217_-	FHA domain-containing protein	NA	NA	NA	NA
WP_015180893.1\|948235_949843_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_015180894.1\|949866_950235_-	hypothetical protein	NA	NA	NA	NA
WP_015180895.1\|950388_950634_-	helix-turn-helix transcriptional regulator	Q786F1	Bacillus_phage	2.0e-05	48.3
WP_081594704.1\|950753_951035_+	hypothetical protein	NA	NA	NA	NA
WP_015180896.1\|951048_951321_+	hypothetical protein	NA	NA	NA	NA
WP_015180897.1\|951425_952058_+	hypothetical protein	NA	NA	NA	NA
WP_015180898.1\|952217_953861_+	TniQ family protein	NA	NA	NA	NA
WP_076612115.1\|953872_954950_+\|transposase	ISKra4-like element ISMic1 family transposase	NA	NA	NA	NA
WP_015180238.1\|955030_955441_+	hypothetical protein	NA	NA	NA	NA
955386:955402	attR	NA	NA	NA	NA
WP_015180900.1\|956429_957104_+	transcriptional regulator	NA	NA	NA	NA
WP_172642223.1\|957297_958611_+	ammonium transporter	NA	NA	NA	NA
WP_015180902.1\|958644_961176_-	caspase family protein	NA	NA	NA	NA
WP_015180903.1\|961184_961562_-	hypothetical protein	NA	NA	NA	NA
WP_015180904.1\|963829_964741_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

3527723 : 3598627

Bacillus_phage(42.86%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015181194.1\|3527723_3529055_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015182964.1\|3531689_3532730_+	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
WP_015182965.1\|3533010_3533400_+	hypothetical protein	NA	NA	NA	NA
WP_015182966.1\|3533571_3534015_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_015182968.1\|3536293_3536899_+	bidirectional hydrogenase complex protein HoxE	NA	NA	NA	NA
WP_015182969.1\|3536984_3538613_+	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_015182970.1\|3538620_3539337_+	bidirectional hydrogenase complex protein HoxU	NA	NA	NA	NA
WP_015182971.1\|3539324_3539873_+	coenzyme F420-reducing hydrogenase subunit gamma	NA	NA	NA	NA
WP_015182972.1\|3539978_3541415_+	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA
WP_015182973.1\|3541484_3541976_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_015182974.1\|3542011_3542263_+	CP12 domain-containing protein	NA	NA	NA	NA
WP_015182975.1\|3542462_3542804_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_015182976.1\|3542805_3543681_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_015182977.1\|3543709_3546274_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_015182978.1\|3546285_3546576_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_041780069.1\|3546638_3546860_-	hypothetical protein	NA	NA	NA	NA
WP_015182979.1\|3546853_3550528_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_015182980.1\|3550759_3551806_+	dihydroorotate dehydrogenase-like protein	NA	NA	NA	NA
WP_015182981.1\|3551811_3552948_+	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_015182982.1\|3552966_3554031_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_015182983.1\|3554431_3555514_+	ATP-dependent 6-phosphofructokinase	H8ZJH0	Ostreococcus_tauri_virus	1.8e-05	25.1
WP_015182984.1\|3555946_3556372_-	VOC family protein	NA	NA	NA	NA
WP_041780070.1\|3556410_3557664_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_015182986.1\|3557925_3558282_+	YciI family protein	NA	NA	NA	NA
WP_015182987.1\|3558376_3558808_+	YciI family protein	NA	NA	NA	NA
WP_015182988.1\|3558867_3559278_+	VOC family protein	NA	NA	NA	NA
WP_155898004.1\|3559334_3559553_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_015182989.1\|3559467_3559809_+	DUF1579 family protein	NA	NA	NA	NA
WP_015182991.1\|3560274_3560670_+	VOC family protein	NA	NA	NA	NA
WP_015182992.1\|3560962_3563572_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	2.7e-39	30.9
WP_015182993.1\|3563961_3564168_-	hypothetical protein	NA	NA	NA	NA
WP_015182994.1\|3564429_3564783_-	hypothetical protein	NA	NA	NA	NA
WP_015182995.1\|3565081_3565486_-	response regulator	A0A220YL79	Alteromonas_virus	3.0e-06	32.7
WP_041780857.1\|3565774_3566149_-	response regulator	W8CYM9	Bacillus_phage	1.6e-09	31.4
WP_155898203.1\|3566201_3567338_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	7.2e-29	34.9
WP_015182998.1\|3571093_3572458_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_041780071.1\|3572763_3573162_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	6.4e-09	32.2
WP_015183000.1\|3574450_3576448_-	response regulator	W8CYM9	Bacillus_phage	7.2e-24	31.2
WP_015180904.1\|3577454_3578366_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_172642241.1\|3578453_3578681_+	hypothetical protein	NA	NA	NA	NA
WP_015183001.1\|3579234_3580077_-	M56 family metallopeptidase	NA	NA	NA	NA
WP_015183002.1\|3580076_3580499_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_041780861.1\|3580687_3581026_+	c-type cytochrome	NA	NA	NA	NA
WP_015183004.1\|3581266_3582196_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015183006.1\|3585357_3586551_+	MFS transporter	NA	NA	NA	NA
WP_015181194.1\|3587366_3588698_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015183007.1\|3589062_3589437_+	DUF1636 domain-containing protein	NA	NA	NA	NA
WP_015183008.1\|3589505_3589937_-	XisI protein	NA	NA	NA	NA
WP_015183009.1\|3591330_3591768_+	DUF1636 family protein	NA	NA	NA	NA
WP_015183010.1\|3592069_3594316_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_015183011.1\|3594299_3594731_+	hypothetical protein	NA	NA	NA	NA
WP_041780075.1\|3594750_3594963_+	hypothetical protein	NA	NA	NA	NA
WP_015180904.1\|3595004_3595916_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_015183012.1\|3596413_3597292_-	hypothetical protein	NA	NA	NA	NA
WP_015183013.1\|3597433_3597700_-	hypothetical protein	NA	NA	NA	NA
WP_015183014.1\|3597937_3598627_-\|protease	ATP-dependent Clp protease adaptor ClpS	NA	NA	NA	NA

DBSCAN-SWA_3

6941420 : 7013030

Escherichia_phage(11.11%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015185676.1\|6941420_6942644_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SLN2	Escherichia_phage	1.6e-71	44.5
WP_015185677.1\|6942689_6944204_+	AAA family ATPase	U5XJW0	Phormidium_phage	3.7e-129	48.2
WP_015185678.1\|6944291_6944759_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_041781388.1\|6944861_6946070_-	glycosyltransferase	A0A0N9P7Z4	Sulfolobales_Virus_YNP2	3.5e-05	32.8
WP_155898277.1\|6946280_6946904_+	cellulose-binding protein	NA	NA	NA	NA
WP_015185681.1\|6946983_6948915_+	squalene--hopene cyclase	NA	NA	NA	NA
WP_015185682.1\|6949541_6950372_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_015185683.1\|6950449_6952078_-	cyclic peptide export ABC transporter	A0A1V0SD74	Indivirus	8.5e-07	26.9
WP_015185684.1\|6952185_6953163_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015185685.1\|6953290_6956554_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_015185686.1\|6956543_6958520_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_015185687.1\|6958535_6961280_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_041780260.1\|6961482_6961710_-	hypothetical protein	NA	NA	NA	NA
WP_015185689.1\|6961884_6962946_+	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA
WP_041780261.1\|6963032_6964055_+	radical SAM protein	NA	NA	NA	NA
WP_015185691.1\|6964271_6965099_-	Bro-N domain-containing protein	A0A290FZK7	Caldibacillus_phage	9.6e-23	39.3
WP_015185692.1\|6965650_6967882_-	caspase family protein	NA	NA	NA	NA
WP_015185693.1\|6968172_6968667_-	hypothetical protein	NA	NA	NA	NA
WP_015185694.1\|6968852_6969989_+	glycosyltransferase	NA	NA	NA	NA
WP_155898111.1\|6969979_6970138_+	hypothetical protein	NA	NA	NA	NA
WP_155898279.1\|6970067_6970268_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_015185695.1\|6970618_6972286_+	B12-binding domain-containing radical SAM protein	A0A0M4R1U9	Streptomyces_phage	1.1e-06	25.9
WP_015185696.1\|6972432_6973455_-	adenosyl-hopene transferase HpnH	NA	NA	NA	NA
WP_015185697.1\|6973639_6978067_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_155898112.1\|6978066_6978246_-	hypothetical protein	NA	NA	NA	NA
WP_041780262.1\|6978515_6978731_-	hypothetical protein	NA	NA	NA	NA
WP_041781391.1\|6979199_6979631_+	hypothetical protein	NA	NA	NA	NA
WP_015185700.1\|6979652_6980150_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_015185701.1\|6980164_6981973_-	VgrG-related protein	NA	NA	NA	NA
WP_015185702.1\|6982219_6982756_-	hypothetical protein	NA	NA	NA	NA
WP_015185703.1\|6982829_6987260_-	hypothetical protein	NA	NA	NA	NA
WP_015185704.1\|6987263_6987797_-\|tail	phage tail protein	NA	NA	NA	NA
WP_041781392.1\|6987796_6988048_-	hypothetical protein	NA	NA	NA	NA
WP_015185706.1\|6988210_6990730_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_155898280.1\|6990771_6993465_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_155898113.1\|6993849_6993993_-	hypothetical protein	NA	NA	NA	NA
WP_015185708.1\|6994145_6995333_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_015185709.1\|6995363_6996146_-	hypothetical protein	NA	NA	NA	NA
WP_015185710.1\|6996153_7001610_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_015185711.1\|7001728_7002967_-	argininosuccinate synthase	NA	NA	NA	NA
WP_015185712.1\|7003439_7005449_-	ATP-binding protein	A0A1B2RW50	Lymphocystis_disease_virus	6.8e-06	30.9
WP_015185713.1\|7005445_7006729_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_015185714.1\|7006756_7007434_-	response regulator transcription factor	NA	NA	NA	NA
WP_041781396.1\|7007637_7008765_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.4e-16	27.6
WP_015185716.1\|7009005_7009581_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_015185717.1\|7009624_7011262_+\|tail	phage tail sheath family protein	H6WFT7	Cyanophage	6.7e-20	31.4
WP_015185718.1\|7011373_7011847_+\|tail	phage tail protein	NA	NA	NA	NA
WP_015185719.1\|7011902_7012376_+\|tail	phage tail protein	NA	NA	NA	NA
WP_015185720.1\|7012547_7013030_+\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_019740

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019740_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_1

8045-8232

TypeIII-A

Consensus_repeat	Method
ATAGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACC	PILER-CR

2 spacers

cas1,cas2,cas6,csx21,csm3gr7

The CRISPR arrays of NC_019740_1

>merge|NC_019740|1|8045-8232|PILER-CR
ATGGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACCGTTGAATTCACATTCACGGATGACGGAAGTAGCAGTGTGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACCATGGATGACAAGCCATGAGAATTCTTGCTCTGACTGATAGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACC

>NC_019740|1|1|8045-8232|PILER-CR
ATGGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACC	GTTGAATTCACATTCACGGATGACGGAAGTAGCAG
TGTGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACC	ATGGATGACAAGCCATGAGAATTCTTGCTCTGACTG
ATAGTTTCCGTCCCCGTGAAGGGGAAGTGAATTGAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186210.1\|1726_2023_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186211.1\|2019_2565_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186225.1\|18578_19199_-\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	unknown
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_019740.1\|WP_015186220.1\|13461_14001_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186215.1\|3540_4134_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019740.1\|WP_015186221.1\|14090_14393_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186222.1\|14670_15114_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186209.1\|957_1446_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186212.1\|2752_2995_+\|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NC_019740.1\|WP_015186216.1\|4300_7915_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
NC_019740.1\|WP_015186214.1\|3274_3544_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|369567
NC_019740.1\|WP_015186223.1\|16430_17270_+\|CRISPR-associated-protein	unknown	unknown	gnl\|CDD\|274263

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.86357e-27
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.1786e-37
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	3.73535e-23
NC_019740.1\|WP_015186215.1\|3540_4134_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.25483e-24
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	4.20281e-120
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.79099e-73
NC_019740.1\|WP_015186216.1\|4300_7915_-\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	3.72639e-11
NC_019740.1\|WP_015186214.1\|3274_3544_-\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	0.0010983
NC_019740.1\|WP_015186223.1\|16430_17270_+\|CRISPR-associated-protein	gnl\|CDD\|274263	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	0.000155095

>NC_019740.1|WP_015186216.1|4300_7915_-|hypothetical-protein
MAGRSLQASPQGIEKAKNALNRNNLTQKALANERGIASWSTVNKFFNGRPVDRSIFIEICQELNLDWEEIVSPSPSNPAAEEPESEEPSVSFSDPLISTVQRNATRTRRALDPYILPRIRREALLEKCLKAIRHSLQAEKQNVIPIIGSAGYGKSTILGNIYDELEEELANTNSGWIALARCDDLIESVDTFATELGEKISGTRESIAQIAQQLNQQYGKGVLLLDTLDIVLTKPLVPVLRILLFELLESGTTLVFTCRDQDYSYFFEPYHESFAGFRHSVNDGCKIPLFNNDEVKQAAREFVKIKQKANATRSGEEFADKIIALSADSQSLQEITRNPLLLALLCDLFAQEENVPEDLTVSQLYAKYWDWKIAKVRKNLPSMQVCLAKEKLCLEIAEAMYKKSDERLRDSLYESNLNLDETEFLAYSELKSDGVIKEIGGKRIVFFHQTFLEYAIARWLYSTDSGECARKQLKNELKASQNTYSKYYIWAVFRQLLTLVSLSEFYQICDELDKTQLLPFRSVAFASVSRSEPESSSILLPLLAIALTKDYAYQEALLIAANSAPNRHGEMVWQIIVKLLEKVGRELINKTTEIAGELLTRLNTAKRDRFQQALDAVKNRTAKALDSQQELYHIYGQLIATYYNKALPHWERQIDLDVLSLLTDYYFIFGGNVRSLVVDLYLKPGVPELIQRELLLAIVQKPASEQCREKEKVKELLKYLLPNWLSSPDSPFGTSWVEALHTPLDKDWTSVVAGVVGQQAALVPDVLETLIEHLFTDSQSQESKDFNRCNLIAIQEAINSGASNKVASILLKIPITTLLQNRISSLSTLLREIAAPIRGKSQVDPELRLALAQWVVPLVHQHPIELIRVIDALATDSPPVQHLLGQLLQQLLPNLPQNQTNPILKKLSHIPEQLEPYLQQTAKSKESRSALLKIYQRQAEHGSSFALSNILQFCLDESIDVARDASWIILAFAEQHKSINVSQLLPVLARSKIVGVRQNCLKALIAAIDSGLEVTEPEILTVFDTLANEQAPEVVLLLYKLLNCLIWNHLSGNVSISLALAEAALNLTHNLVNEKNQKTLDMVAHSAFISLNQMTNLKDVRLMPQLAEHTRALLRSTDISRKIDKLVITGLLNKLAKHNDKLLEQIVRDDFVIGDRVLPVANMCAVAVAIVHAQGKNAPLLNVLLNDERLPEDVKSRILREQGV
>NC_019740.1|WP_015186215.1|3540_4134_-|ParA-family-protein
MIVTVASFKGGVGKTTSALHLAAYFQDKAPTLLVDGDLNRSALDWASRGNLPFKVVDEKQAVKFAREYEHIIIDTPARPSPDELKIIASGCDLLVLPTSPDALALGATLQMVEALHCLKTNYKILLTLIPPHPNKTGEEAKNAIAKVELPMFSTGIRRLAVFQKAALEGVPVNQVKGDSYAGIAWRCYFEVGKEILP
>NC_019740.1|WP_015186214.1|3274_3544_-|ribbon-helix-helix-protein,-CopG-family
MTNKKDSTRFDALFGATKQKKQTREPTDSKPVRKSKSTDPDYVRTTVYLPKQLHKQLKAAAADEEREMSDIVKELVEQWLKSRSEHSDV
>NC_019740.1|WP_015186212.1|2752_2995_+|CopG-family-transcriptional-regulator
MSVEKGGESGRPLKWGERKARTTFSLTPWAIDELDKIAKRFNLSKSELIEQLTRGRFVLIPKEGETAEVIKKPSGGTSPL
>NC_019740.1|WP_015186211.1|2019_2565_-|hypothetical-protein
MPNNQPSSEYLAGSSCAYQQALDDFGITELLETLSHFQDADFNAQELHLEPEELDSIAALLINQLTGSLNGKLMSGYFNAHRHGNADVFSRPITLEFPQSASLPSDFPNNAPKPRFEFGAIVSVNSSEWGVVIGRFYNYAPHRCCWMWRYILWLDSTSSSAAWVVAATAWEEDLARIGEES
>NC_019740.1|WP_015186210.1|1726_2023_-|hypothetical-protein
MRNPRPIGERELRLIARFANCRLEMTPRQFYEKWDVTYEQMSQLCRCDITTVNQWFRRGRHYQPPRHYHKWYLALADILLECYEDIPETLLHRLCLGR
>NC_019740.1|WP_015186209.1|957_1446_-|hypothetical-protein
MKHSDWLRLNKEGEQICAVFRQQGYQCKKQSRRLSWQLSQEGQDDYTLTWLPAPVGDWSLIPNDSSPAREKMWAIVQNALTPKPGQATTDQRVQQSEDYSRPWAIVRLLPDARRYTVARFFNRQDAEDHRRFLHRYMPASEFEVIFDVPNPQLNNDVAHIKT
>NC_019740.1|WP_015186217.1|8789_10793_-|CRISPR-associated-endonuclease-Cas1
MDFPLEDLIAAWRQVRRGSRSAGIDGITTDLFAGVAKEQLYSLQRQLQQEHYAAHPALGFYLRKTRGGKRLIGIPVVLDRIVQRLLLEELYLPLEDTFLDCSYAYRPGRGIQMAVQHLESYYQFQPTWVIKADIAQFFDNLCHALLFTHLEQLQLEPIVLQLIEQQLKAGIVIKGQRLFPQKGVLQGAVLSGALANLYLTEFDRQCLSHGLNLVRYGDDFVVVAPDWIQANRALEQITTGLAQLYLTLQPEKTKIFAPDEEFTFLGYQFAGGTVTAPPPVVNEDSEAFSESGSPSRRKTRQPPKLKSRPPKTCNIVKRSQFPIADLDHYWKEPMTTLYITDQGAYLKVEHQQFVVFYQGELRCKVPVNRVSHIVLFGCCNLSHGAVSLALRRRIPVLYLSQKGRYFGRLQTEGQAEVEYLVRQVQCALDPDFTRRQAKSIVLGKLHNSRILLMRLNRRVKSEKAAKAIDSLALLMLDVPDAESIEVLLGYEGHGSHLYFQALGTLFKEPFVFEKRTKRPPTDPVNSLLSLGYTLLSQNMYSMVQTVGLHPHFGNLHVPRNNHPALVSDLMEEFRALLVDSLVAYLVNSKIFVLEDFTPPDERGGVYLFPDALKKYLKHWEERLQSKMTHPHTGYKVSNRRCLELQVWEYIACLMGEQEIYRPMTWKM
>NC_019740.1|WP_015186218.1|11987_12989_+|CRISPR-associated-endonuclease-Cas1
MNNLYITGTESYLKVQDQHLLVFHPHKPCCKVAINQVNNLVLIGYCKRSDKAIYFALSRCIPVLFLDDKGNYFGRIETEERRRVKYLAHQLKRAKDLEFTRAIAESIVRAKLHNSCTLLRHFSHCHPTKATQTTLDAMALLLDDLPLADSVDVLREYGQTATKLYFQSLGCLFAGALNFDQPIQHQPTHPINSLLNLGYTLLNQNIYALLQAVGLHSHFGNLHIHRDHHPALVADFMEEFSALLVDALVVDLVILQLFTPADFTLPDARGGVYLYPNAINKFIQYWEKTLQSEVNHLYAGTVNYQQCLEWQVQEYVACLLGEREFYRPFLSKK
>NC_019740.1|WP_015186219.1|13028_13310_+|CRISPR-associated-endonuclease-Cas2
MAFYLVCYDIVKDSRRNKVAHLLEGYGLRVQKSVFEVVLDEQQYEKLQKRLLKYLNQREDQLRFYPLSARNRSKVLVLGVQPEFAVDDAAFIV
>NC_019740.1|WP_015186220.1|13461_14001_+|hypothetical-protein
MSQPVNDIRDNPSTALSGYQQALDDFGIIQLLQKLILLAPTEFKVEERESLATMLIERLTTSLNRSLIDQCLNPIYPCHEGVISDLITTELNALPSSINLAENFSYYLSFAYFVVGEKVQWKPIFEPTDWGIVLGRFYAYAHHRCRWGWKYVIWLAQDSPSSAWTIVDTAWEEDLVRKK
>NC_019740.1|WP_015186221.1|14090_14393_+|hypothetical-protein
MSNPRSLTQRELDLIELYSHCELGMTPRQFYAKWQVTYELIAAICSRSLSTVSSWFSRGGNYRRPTPNDLRHLALMDFLLEHEISDELFSLLCRPWESQK
>NC_019740.1|WP_015186222.1|14670_15114_+|hypothetical-protein
MKHSDWLRLHNEGETICATLRQKGYHCQKQARRLSWWVSQEGSHSYVLTYLTTPVSEWSIMPNDAHPAREKLISIVQSALDNQEEGVTTEQPPEYDPRPWAIVRLLPDARRYTVAKFFNRQDAHDHLRMLHRFMPAAEFEIVFDAVD
>NC_019740.1|WP_015186223.1|16430_17270_+|CRISPR-associated-protein
MKQNRIVELITDPTKNFLSSFVVGTLLFTVISDGLSALFWETFGDWLQTQLGIEKAILQAAITTILILLILVVIYATNFPQWLKPLIAKFPIFGIKVPDDTNVVPLTTTFPGLITAMSLREDSPAQRVIEHHWNQGQKPHLKHCWLICTNQSLPYAQKMIKKLTDTGMTQTVEFHYGNYELEDLEHPGQKLNLLVPDDVVDDPNYIRRLVNCIYADAKHQGLEESQLIADYTGATKSMTVGIVLACTAPERQLQYISQITDPQMMQVKISYKLKPLEAG
>NC_019740.1|WP_015186224.1|17270_18398_-|CRISPR-associated-endoribonuclease-Cas6
MAQRSLKKDQAGEPNLTWPSSTELVGLVFEVIPQKAATLYPEYTKTLHAWFLDQVRSHDPQLSASLHDDESKKPFTISGLDGKMDTTTGGQLQLLSDQTYYWTVTAFSPTVVQWLGHWLEHLPPAIELRYAPLQIQSVAFALPPTTYAQLYQAEIAKTLTLSFLTPTSFRRKGHHLPLPWPVNVFHSYLRRWNEFSGMPSDDEAFLAWVDESVLISRHQLESVKVAAGKQGKVTGFLGAVEYSLTSEATKQRHFQRLFTALGQLAPYCGTGHKTTFGLGQTRLGWLSKPNSIETLLAQALLAKRVEELTDVLMQGQKRTGGDRAIKVCQTQATILARQEAGESLIAIAQDLDMPYETVKTYVKRARHRLKSEELA
>NC_019740.1|WP_015186225.1|18578_19199_-|hypothetical-protein
MLVTENLTEIQWQMAHTIAQILVKENADVNELGKAIAYLRAYSDRENAGSRFFDYLKTLAKNGRHIGHSQRTSDYYDSIEKACSQYLKAYKDDVAAMLQILGWASRLMRYYANAGSIGEITAPVIESVRQAEIAEVTQSQAFALNQILEAKVLKIKGNKVTYEILGVIKLTEKEPKKASSLVEKQTVQVKITALQNGSIKSVKCVD
>NC_019740.1|WP_015186226.1|19199_20306_-|RAMP-superfamily-protein
MTNNRPQSPRPVSPSTRPTRPNSANAPTGLVAPKPYELVSLPTQSPEKAQPAGQERFKSDRISGKISLRLTVKTASFIASGVVAMGSDLSDKTRSIPLIKTSIEGNQKLLIPGSSFKGVVRSTYEAITRSCLCKVTRKYQSQIPSGYQECTINRQRNQLTVCPACQVFGAMDWQGLVHFTDAKCETTGFSTGFMPSLYRPRPDERKAYFNQQGKVAGRKFYYHAVKAVDKGQQQGIPVQQASKEYTFTTQLRFMNLTPAELGTLLIVLGQDPKNPIALKVGGGKPVGMGTMVVDVTEIKRINNKQEWRDRYCSYDSQPDSLTGKMLEQFIQTAIQAAHTQKLVQDKQLQELKQVLKWPTDREPPEGVY

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Crispr_ID: NC_019740_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_2

11240-11789

TypeIII

Consensus_repeat	Method
GTTTCCGTCCCCGTAAAGGGGAAGAGATTTGAAAC	PILER-CR
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CRISPRCasFinder
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CRT

7 spacers

cas1,cas2,cas6,csx21,csm3gr7,csx19

The CRISPR arrays of NC_019740_2

>merge|NC_019740|2|11240-11789|PILER-CR,CRISPRCasFinder,CRT
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACTGTATGCTTCAAGCGGTGTTTTACCGCTCTGGATTAGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACGCAACGTTCATAATAAGAACACTGCTACTTCCGTCATCCGGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACATTTGGCTGGGCATAGGTATATGTGCCTGATCCGATTAGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACCCTAGGGTTCTTTTCCTTTCTTTCTCACAATCATTGAGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACGTGGTGGTATTTCGGGGGATGTACCGGGGTTGGGCTGACTGGGGGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACATTGTAAAACCATAACTTTGGAAACTTTCTCCCTCGATAAAGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAACCGGTTTGGGTTCGGACGGGGTTTTCTCCGCTAACGTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC

>NC_019740|2|2|11240-11789|PILER-CR
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	TGTATGCTTCAAGCGGTGTTTTACCGCTCTGGATTA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	GCAACGTTCATAATAAGAACACTGCTACTTCCGTCATCCG
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	ATTTGGCTGGGCATAGGTATATGTGCCTGATCCGATTA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CCTAGGGTTCTTTTCCTTTCTTTCTCACAATCATTGA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	GTGGTGGTATTTCGGGGGATGTACCGGGGTTGGGCTGACTGGGG
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	ATTGTAAAACCATAACTTTGGAAACTTTCTCCCTCGATAAA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CGGTTTGGGTTCGGACGGGGTTTTCTCCGCTAAC
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC

>NC_019740|2|1|11240-11789|CRISPRCasFinder
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	TGTATGCTTCAAGCGGTGTTTTACCGCTCTGGATTA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	GCAACGTTCATAATAAGAACACTGCTACTTCCGTCATCCG
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	ATTTGGCTGGGCATAGGTATATGTGCCTGATCCGATTA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CCTAGGGTTCTTTTCCTTTCTTTCTCACAATCATTGA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	GTGGTGGTATTTCGGGGGATGTACCGGGGTTGGGCTGACTGGGG
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	ATTGTAAAACCATAACTTTGGAAACTTTCTCCCTCGATAAA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CGGTTTGGGTTCGGACGGGGTTTTCTCCGCTAAC
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC

>NC_019740|2|1|11240-11789|CRT
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	TGTATGCTTCAAGCGGTGTTTTACCGCTCTGGATTA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	GCAACGTTCATAATAAGAACACTGCTACTTCCGTCATCCG
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	ATTTGGCTGGGCATAGGTATATGTGCCTGATCCGATTA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CCTAGGGTTCTTTTCCTTTCTTTCTCACAATCATTGA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	GTGGTGGTATTTCGGGGGATGTACCGGGGTTGGGCTGACTGGGG
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	ATTGTAAAACCATAACTTTGGAAACTTTCTCCCTCGATAAA
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC	CGGTTTGGGTTCGGACGGGGTTTTCTCCGCTAAC
GTTTCAAATCTCTTCCCCTTTACGGGGACGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186227.1\|20302_20743_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186210.1\|1726_2023_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186211.1\|2019_2565_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186225.1\|18578_19199_-\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	unknown
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_019740.1\|WP_015186220.1\|13461_14001_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186215.1\|3540_4134_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019740.1\|WP_015186221.1\|14090_14393_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186222.1\|14670_15114_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186209.1\|957_1446_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186212.1\|2752_2995_+\|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NC_019740.1\|WP_015186216.1\|4300_7915_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
NC_019740.1\|WP_015186214.1\|3274_3544_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|369567
NC_019740.1\|WP_015186223.1\|16430_17270_+\|CRISPR-associated-protein	unknown	unknown	gnl\|CDD\|274263

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.86357e-27
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.1786e-37
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	3.73535e-23
NC_019740.1\|WP_015186215.1\|3540_4134_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.25483e-24
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	4.20281e-120
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.79099e-73
NC_019740.1\|WP_015186216.1\|4300_7915_-\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	3.72639e-11
NC_019740.1\|WP_015186214.1\|3274_3544_-\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	0.0010983
NC_019740.1\|WP_015186223.1\|16430_17270_+\|CRISPR-associated-protein	gnl\|CDD\|274263	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	0.000155095

>NC_019740.1|WP_015186217.1|8789_10793_-|CRISPR-associated-endonuclease-Cas1
MDFPLEDLIAAWRQVRRGSRSAGIDGITTDLFAGVAKEQLYSLQRQLQQEHYAAHPALGFYLRKTRGGKRLIGIPVVLDRIVQRLLLEELYLPLEDTFLDCSYAYRPGRGIQMAVQHLESYYQFQPTWVIKADIAQFFDNLCHALLFTHLEQLQLEPIVLQLIEQQLKAGIVIKGQRLFPQKGVLQGAVLSGALANLYLTEFDRQCLSHGLNLVRYGDDFVVVAPDWIQANRALEQITTGLAQLYLTLQPEKTKIFAPDEEFTFLGYQFAGGTVTAPPPVVNEDSEAFSESGSPSRRKTRQPPKLKSRPPKTCNIVKRSQFPIADLDHYWKEPMTTLYITDQGAYLKVEHQQFVVFYQGELRCKVPVNRVSHIVLFGCCNLSHGAVSLALRRRIPVLYLSQKGRYFGRLQTEGQAEVEYLVRQVQCALDPDFTRRQAKSIVLGKLHNSRILLMRLNRRVKSEKAAKAIDSLALLMLDVPDAESIEVLLGYEGHGSHLYFQALGTLFKEPFVFEKRTKRPPTDPVNSLLSLGYTLLSQNMYSMVQTVGLHPHFGNLHVPRNNHPALVSDLMEEFRALLVDSLVAYLVNSKIFVLEDFTPPDERGGVYLFPDALKKYLKHWEERLQSKMTHPHTGYKVSNRRCLELQVWEYIACLMGEQEIYRPMTWKM
>NC_019740.1|WP_015186216.1|4300_7915_-|hypothetical-protein
MAGRSLQASPQGIEKAKNALNRNNLTQKALANERGIASWSTVNKFFNGRPVDRSIFIEICQELNLDWEEIVSPSPSNPAAEEPESEEPSVSFSDPLISTVQRNATRTRRALDPYILPRIRREALLEKCLKAIRHSLQAEKQNVIPIIGSAGYGKSTILGNIYDELEEELANTNSGWIALARCDDLIESVDTFATELGEKISGTRESIAQIAQQLNQQYGKGVLLLDTLDIVLTKPLVPVLRILLFELLESGTTLVFTCRDQDYSYFFEPYHESFAGFRHSVNDGCKIPLFNNDEVKQAAREFVKIKQKANATRSGEEFADKIIALSADSQSLQEITRNPLLLALLCDLFAQEENVPEDLTVSQLYAKYWDWKIAKVRKNLPSMQVCLAKEKLCLEIAEAMYKKSDERLRDSLYESNLNLDETEFLAYSELKSDGVIKEIGGKRIVFFHQTFLEYAIARWLYSTDSGECARKQLKNELKASQNTYSKYYIWAVFRQLLTLVSLSEFYQICDELDKTQLLPFRSVAFASVSRSEPESSSILLPLLAIALTKDYAYQEALLIAANSAPNRHGEMVWQIIVKLLEKVGRELINKTTEIAGELLTRLNTAKRDRFQQALDAVKNRTAKALDSQQELYHIYGQLIATYYNKALPHWERQIDLDVLSLLTDYYFIFGGNVRSLVVDLYLKPGVPELIQRELLLAIVQKPASEQCREKEKVKELLKYLLPNWLSSPDSPFGTSWVEALHTPLDKDWTSVVAGVVGQQAALVPDVLETLIEHLFTDSQSQESKDFNRCNLIAIQEAINSGASNKVASILLKIPITTLLQNRISSLSTLLREIAAPIRGKSQVDPELRLALAQWVVPLVHQHPIELIRVIDALATDSPPVQHLLGQLLQQLLPNLPQNQTNPILKKLSHIPEQLEPYLQQTAKSKESRSALLKIYQRQAEHGSSFALSNILQFCLDESIDVARDASWIILAFAEQHKSINVSQLLPVLARSKIVGVRQNCLKALIAAIDSGLEVTEPEILTVFDTLANEQAPEVVLLLYKLLNCLIWNHLSGNVSISLALAEAALNLTHNLVNEKNQKTLDMVAHSAFISLNQMTNLKDVRLMPQLAEHTRALLRSTDISRKIDKLVITGLLNKLAKHNDKLLEQIVRDDFVIGDRVLPVANMCAVAVAIVHAQGKNAPLLNVLLNDERLPEDVKSRILREQGV
>NC_019740.1|WP_015186215.1|3540_4134_-|ParA-family-protein
MIVTVASFKGGVGKTTSALHLAAYFQDKAPTLLVDGDLNRSALDWASRGNLPFKVVDEKQAVKFAREYEHIIIDTPARPSPDELKIIASGCDLLVLPTSPDALALGATLQMVEALHCLKTNYKILLTLIPPHPNKTGEEAKNAIAKVELPMFSTGIRRLAVFQKAALEGVPVNQVKGDSYAGIAWRCYFEVGKEILP
>NC_019740.1|WP_015186214.1|3274_3544_-|ribbon-helix-helix-protein,-CopG-family
MTNKKDSTRFDALFGATKQKKQTREPTDSKPVRKSKSTDPDYVRTTVYLPKQLHKQLKAAAADEEREMSDIVKELVEQWLKSRSEHSDV
>NC_019740.1|WP_015186212.1|2752_2995_+|CopG-family-transcriptional-regulator
MSVEKGGESGRPLKWGERKARTTFSLTPWAIDELDKIAKRFNLSKSELIEQLTRGRFVLIPKEGETAEVIKKPSGGTSPL
>NC_019740.1|WP_015186211.1|2019_2565_-|hypothetical-protein
MPNNQPSSEYLAGSSCAYQQALDDFGITELLETLSHFQDADFNAQELHLEPEELDSIAALLINQLTGSLNGKLMSGYFNAHRHGNADVFSRPITLEFPQSASLPSDFPNNAPKPRFEFGAIVSVNSSEWGVVIGRFYNYAPHRCCWMWRYILWLDSTSSSAAWVVAATAWEEDLARIGEES
>NC_019740.1|WP_015186210.1|1726_2023_-|hypothetical-protein
MRNPRPIGERELRLIARFANCRLEMTPRQFYEKWDVTYEQMSQLCRCDITTVNQWFRRGRHYQPPRHYHKWYLALADILLECYEDIPETLLHRLCLGR
>NC_019740.1|WP_015186209.1|957_1446_-|hypothetical-protein
MKHSDWLRLNKEGEQICAVFRQQGYQCKKQSRRLSWQLSQEGQDDYTLTWLPAPVGDWSLIPNDSSPAREKMWAIVQNALTPKPGQATTDQRVQQSEDYSRPWAIVRLLPDARRYTVARFFNRQDAEDHRRFLHRYMPASEFEVIFDVPNPQLNNDVAHIKT
>NC_019740.1|WP_015186218.1|11987_12989_+|CRISPR-associated-endonuclease-Cas1
MNNLYITGTESYLKVQDQHLLVFHPHKPCCKVAINQVNNLVLIGYCKRSDKAIYFALSRCIPVLFLDDKGNYFGRIETEERRRVKYLAHQLKRAKDLEFTRAIAESIVRAKLHNSCTLLRHFSHCHPTKATQTTLDAMALLLDDLPLADSVDVLREYGQTATKLYFQSLGCLFAGALNFDQPIQHQPTHPINSLLNLGYTLLNQNIYALLQAVGLHSHFGNLHIHRDHHPALVADFMEEFSALLVDALVVDLVILQLFTPADFTLPDARGGVYLYPNAINKFIQYWEKTLQSEVNHLYAGTVNYQQCLEWQVQEYVACLLGEREFYRPFLSKK
>NC_019740.1|WP_015186219.1|13028_13310_+|CRISPR-associated-endonuclease-Cas2
MAFYLVCYDIVKDSRRNKVAHLLEGYGLRVQKSVFEVVLDEQQYEKLQKRLLKYLNQREDQLRFYPLSARNRSKVLVLGVQPEFAVDDAAFIV
>NC_019740.1|WP_015186220.1|13461_14001_+|hypothetical-protein
MSQPVNDIRDNPSTALSGYQQALDDFGIIQLLQKLILLAPTEFKVEERESLATMLIERLTTSLNRSLIDQCLNPIYPCHEGVISDLITTELNALPSSINLAENFSYYLSFAYFVVGEKVQWKPIFEPTDWGIVLGRFYAYAHHRCRWGWKYVIWLAQDSPSSAWTIVDTAWEEDLVRKK
>NC_019740.1|WP_015186221.1|14090_14393_+|hypothetical-protein
MSNPRSLTQRELDLIELYSHCELGMTPRQFYAKWQVTYELIAAICSRSLSTVSSWFSRGGNYRRPTPNDLRHLALMDFLLEHEISDELFSLLCRPWESQK
>NC_019740.1|WP_015186222.1|14670_15114_+|hypothetical-protein
MKHSDWLRLHNEGETICATLRQKGYHCQKQARRLSWWVSQEGSHSYVLTYLTTPVSEWSIMPNDAHPAREKLISIVQSALDNQEEGVTTEQPPEYDPRPWAIVRLLPDARRYTVAKFFNRQDAHDHLRMLHRFMPAAEFEIVFDAVD
>NC_019740.1|WP_015186223.1|16430_17270_+|CRISPR-associated-protein
MKQNRIVELITDPTKNFLSSFVVGTLLFTVISDGLSALFWETFGDWLQTQLGIEKAILQAAITTILILLILVVIYATNFPQWLKPLIAKFPIFGIKVPDDTNVVPLTTTFPGLITAMSLREDSPAQRVIEHHWNQGQKPHLKHCWLICTNQSLPYAQKMIKKLTDTGMTQTVEFHYGNYELEDLEHPGQKLNLLVPDDVVDDPNYIRRLVNCIYADAKHQGLEESQLIADYTGATKSMTVGIVLACTAPERQLQYISQITDPQMMQVKISYKLKPLEAG
>NC_019740.1|WP_015186224.1|17270_18398_-|CRISPR-associated-endoribonuclease-Cas6
MAQRSLKKDQAGEPNLTWPSSTELVGLVFEVIPQKAATLYPEYTKTLHAWFLDQVRSHDPQLSASLHDDESKKPFTISGLDGKMDTTTGGQLQLLSDQTYYWTVTAFSPTVVQWLGHWLEHLPPAIELRYAPLQIQSVAFALPPTTYAQLYQAEIAKTLTLSFLTPTSFRRKGHHLPLPWPVNVFHSYLRRWNEFSGMPSDDEAFLAWVDESVLISRHQLESVKVAAGKQGKVTGFLGAVEYSLTSEATKQRHFQRLFTALGQLAPYCGTGHKTTFGLGQTRLGWLSKPNSIETLLAQALLAKRVEELTDVLMQGQKRTGGDRAIKVCQTQATILARQEAGESLIAIAQDLDMPYETVKTYVKRARHRLKSEELA
>NC_019740.1|WP_015186225.1|18578_19199_-|hypothetical-protein
MLVTENLTEIQWQMAHTIAQILVKENADVNELGKAIAYLRAYSDRENAGSRFFDYLKTLAKNGRHIGHSQRTSDYYDSIEKACSQYLKAYKDDVAAMLQILGWASRLMRYYANAGSIGEITAPVIESVRQAEIAEVTQSQAFALNQILEAKVLKIKGNKVTYEILGVIKLTEKEPKKASSLVEKQTVQVKITALQNGSIKSVKCVD
>NC_019740.1|WP_015186226.1|19199_20306_-|RAMP-superfamily-protein
MTNNRPQSPRPVSPSTRPTRPNSANAPTGLVAPKPYELVSLPTQSPEKAQPAGQERFKSDRISGKISLRLTVKTASFIASGVVAMGSDLSDKTRSIPLIKTSIEGNQKLLIPGSSFKGVVRSTYEAITRSCLCKVTRKYQSQIPSGYQECTINRQRNQLTVCPACQVFGAMDWQGLVHFTDAKCETTGFSTGFMPSLYRPRPDERKAYFNQQGKVAGRKFYYHAVKAVDKGQQQGIPVQQASKEYTFTTQLRFMNLTPAELGTLLIVLGQDPKNPIALKVGGGKPVGMGTMVVDVTEIKRINNKQEWRDRYCSYDSQPDSLTGKMLEQFIQTAIQAAHTQKLVQDKQLQELKQVLKWPTDREPPEGVY
>NC_019740.1|WP_015186227.1|20302_20743_-|hypothetical-protein
MNPFVGVKEQLLTVEELKNLLQQSSTQPNYYFLRWPHKVSGIVGQLPNEFPSPEGQMFNYDRELRWKQQGQHFSVLLLSTTGAEPGFKPIGQKWETQQRDAHIYPATETRFPKGLSSTNVDVAQRYFMDADTATVHFVALTVAKKQ

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Crispr_ID: NC_019740_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_3

15495-16257

TypeIII

Consensus_repeat	Method
GTTTCCGTCCCCGTAAAGGGGAAGTTAATTGAAAC	PILER-CR
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	CRISPRCasFinder
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	CRT

10 spacers

cas2,cas1,cas6,csx21,csm3gr7,csx19,PD-DExK,csm6

The CRISPR arrays of NC_019740_3

>merge|NC_019740|3|15495-16257|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAACTTTCCTAGCTCTCTCGGTTGCGTCTGTTGGAGTTAAGTGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACATTTCTGGGCTATTGGTACCGGGTGTGGGCATCGCCGGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACTTCTGACCCTAGACGCAGCTTCTTCTGGACTTAAATAGTGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACTCGGATGGAATTAGAGCTTTCATACACAGTTCCGTGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACATAGCGGCAATGGCAACAACGATGGCGATGAAATTTTGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACCCAATTTGGTAACCACTAACTAGTTCATTTTCCACTAAGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACTCATACACAGTTCCGTCAACCGTGGCCAAACGCGAGCGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACATTTTACGCTTTTCAAGGCATTCTTCGTGTAGAAATAATAGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACATTGTTCTGATTGAGTGTTTCGCCAAGCACCCCGATTGGTTTCAATTAACTTCCCCTTTACGGGGACGGAAACGCGAGTCCTACCGATGTTGCGAAAACACTGATTGCACTTGTTTCAATTAACTTCCCCTTCACGGGGACGGAACG

>NC_019740|3|3|15495-16257|PILER-CR
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TTTCCTAGCTCTCTCGGTTGCGTCTGTTGGAGTTAAGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTTCTGGGCTATTGGTACCGGGTGTGGGCATCGCCG
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TTCTGACCCTAGACGCAGCTTCTTCTGGACTTAAATAGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TCGGATGGAATTAGAGCTTTCATACACAGTTCCGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATAGCGGCAATGGCAACAACGATGGCGATGAAATTTT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	CCAATTTGGTAACCACTAACTAGTTCATTTTCCACTAA
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TCATACACAGTTCCGTCAACCGTGGCCAAACGCGAGC
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTTTACGCTTTTCAAGGCATTCTTCGTGTAGAAATAATA
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTGTTCTGATTGAGTGTTTCGCCAAGCACCCCGATTG
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	GCGAGTCCTACCGATGTTGCGAAAACACTGATTGCACTT
GTTTCAATTAACTTCCCCTTCACGGGGACGGAACG

>NC_019740|3|2|15495-16257|CRISPRCasFinder
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TTTCCTAGCTCTCTCGGTTGCGTCTGTTGGAGTTAAGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTTCTGGGCTATTGGTACCGGGTGTGGGCATCGCCG
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TTCTGACCCTAGACGCAGCTTCTTCTGGACTTAAATAGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TCGGATGGAATTAGAGCTTTCATACACAGTTCCGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATAGCGGCAATGGCAACAACGATGGCGATGAAATTTT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	CCAATTTGGTAACCACTAACTAGTTCATTTTCCACTAA
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TCATACACAGTTCCGTCAACCGTGGCCAAACGCGAGC
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTTTACGCTTTTCAAGGCATTCTTCGTGTAGAAATAATA
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTGTTCTGATTGAGTGTTTCGCCAAGCACCCCGATTG
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	GCGAGTCCTACCGATGTTGCGAAAACACTGATTGCACTT
GTTTCAATTAACTTCCCCTTCACGGGGACGGAACG

>NC_019740|3|2|15495-16257|CRT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TTTCCTAGCTCTCTCGGTTGCGTCTGTTGGAGTTAAGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTTCTGGGCTATTGGTACCGGGTGTGGGCATCGCCG
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TTCTGACCCTAGACGCAGCTTCTTCTGGACTTAAATAGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TCGGATGGAATTAGAGCTTTCATACACAGTTCCGT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATAGCGGCAATGGCAACAACGATGGCGATGAAATTTT
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	CCAATTTGGTAACCACTAACTAGTTCATTTTCCACTAA
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	TCATACACAGTTCCGTCAACCGTGGCCAAACGCGAGC
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTTTACGCTTTTCAAGGCATTCTTCGTGTAGAAATAATA
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	ATTGTTCTGATTGAGTGTTTCGCCAAGCACCCCGATTG
GTTTCAATTAACTTCCCCTTTACGGGGACGGAAAC	GCGAGTCCTACCGATGTTGCGAAAACACTGATTGCACTT
GTTTCAATTAACTTCCCCTTCACGGGGACGGAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015186221.1\|14090_14393_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186230.1\|22370_22991_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_019740.1\|WP_015186229.1\|21722_22343_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186227.1\|20302_20743_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_019740.1\|WP_015186225.1\|18578_19199_-\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	unknown
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_019740.1\|WP_015186220.1\|13461_14001_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186215.1\|3540_4134_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186228.1\|20739_21693_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_019740.1\|WP_015186222.1\|14670_15114_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186212.1\|2752_2995_+\|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NC_019740.1\|WP_015186216.1\|4300_7915_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
NC_019740.1\|WP_015186214.1\|3274_3544_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|369567
NC_019740.1\|WP_015186223.1\|16430_17270_+\|CRISPR-associated-protein	unknown	unknown	gnl\|CDD\|274263

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019740.1\|WP_015186227.1\|20302_20743_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	4.7e-70	228.9	0.1
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	4.2e-51	168.6	0.3
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	2.9e-98	323.5	0.0
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	1.3e-77	254.7	0.0
NC_019740.1\|WP_015186229.1\|21722_22343_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	2.9e-60	198.0	0.5
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	2.3e-66	218.7	0.0
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	4.7e-42	138.1	0.0
NC_019740.1\|WP_015186225.1\|18578_19199_-\|hypothetical-protein	csx21	mkCas0116_csx21_CAS-III-A:CAS-III-D	8.6e-93	304.4	5.6
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	2.7e-45	150.1	0.2
NC_019740.1\|WP_015186228.1\|20739_21693_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	1.2e-51	170.3	0.0
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	2.3e-28	93.0	0.9
NC_019740.1\|WP_015186230.1\|22370_22991_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	5e-61	200.5	0.6

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186224.1\|17270_18398_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.1786e-37
NC_019740.1\|WP_015186217.1\|8789_10793_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	4.20281e-120
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	8.25571e-87
NC_019740.1\|WP_015186218.1\|11987_12989_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	5.79099e-73
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	5.49969e-42
NC_019740.1\|WP_015186226.1\|19199_20306_-\|RAMP-superfamily-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	3.73535e-23
NC_019740.1\|WP_015186228.1\|20739_21693_-\|RAMP-superfamily-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.05712e-40
NC_019740.1\|WP_015186215.1\|3540_4134_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.25483e-24
NC_019740.1\|WP_015186219.1\|13028_13310_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.86357e-27
NC_019740.1\|WP_015186216.1\|4300_7915_-\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	3.72639e-11
NC_019740.1\|WP_015186214.1\|3274_3544_-\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|369567	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5. This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.	0.0010983
NC_019740.1\|WP_015186223.1\|16430_17270_+\|CRISPR-associated-protein	gnl\|CDD\|274263	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	0.000155095

>NC_019740.1|WP_015186222.1|14670_15114_+|hypothetical-protein
MKHSDWLRLHNEGETICATLRQKGYHCQKQARRLSWWVSQEGSHSYVLTYLTTPVSEWSIMPNDAHPAREKLISIVQSALDNQEEGVTTEQPPEYDPRPWAIVRLLPDARRYTVAKFFNRQDAHDHLRMLHRFMPAAEFEIVFDAVD
>NC_019740.1|WP_015186221.1|14090_14393_+|hypothetical-protein
MSNPRSLTQRELDLIELYSHCELGMTPRQFYAKWQVTYELIAAICSRSLSTVSSWFSRGGNYRRPTPNDLRHLALMDFLLEHEISDELFSLLCRPWESQK
>NC_019740.1|WP_015186220.1|13461_14001_+|hypothetical-protein
MSQPVNDIRDNPSTALSGYQQALDDFGIIQLLQKLILLAPTEFKVEERESLATMLIERLTTSLNRSLIDQCLNPIYPCHEGVISDLITTELNALPSSINLAENFSYYLSFAYFVVGEKVQWKPIFEPTDWGIVLGRFYAYAHHRCRWGWKYVIWLAQDSPSSAWTIVDTAWEEDLVRKK
>NC_019740.1|WP_015186219.1|13028_13310_+|CRISPR-associated-endonuclease-Cas2
MAFYLVCYDIVKDSRRNKVAHLLEGYGLRVQKSVFEVVLDEQQYEKLQKRLLKYLNQREDQLRFYPLSARNRSKVLVLGVQPEFAVDDAAFIV
>NC_019740.1|WP_015186218.1|11987_12989_+|CRISPR-associated-endonuclease-Cas1
MNNLYITGTESYLKVQDQHLLVFHPHKPCCKVAINQVNNLVLIGYCKRSDKAIYFALSRCIPVLFLDDKGNYFGRIETEERRRVKYLAHQLKRAKDLEFTRAIAESIVRAKLHNSCTLLRHFSHCHPTKATQTTLDAMALLLDDLPLADSVDVLREYGQTATKLYFQSLGCLFAGALNFDQPIQHQPTHPINSLLNLGYTLLNQNIYALLQAVGLHSHFGNLHIHRDHHPALVADFMEEFSALLVDALVVDLVILQLFTPADFTLPDARGGVYLYPNAINKFIQYWEKTLQSEVNHLYAGTVNYQQCLEWQVQEYVACLLGEREFYRPFLSKK
>NC_019740.1|WP_015186217.1|8789_10793_-|CRISPR-associated-endonuclease-Cas1
MDFPLEDLIAAWRQVRRGSRSAGIDGITTDLFAGVAKEQLYSLQRQLQQEHYAAHPALGFYLRKTRGGKRLIGIPVVLDRIVQRLLLEELYLPLEDTFLDCSYAYRPGRGIQMAVQHLESYYQFQPTWVIKADIAQFFDNLCHALLFTHLEQLQLEPIVLQLIEQQLKAGIVIKGQRLFPQKGVLQGAVLSGALANLYLTEFDRQCLSHGLNLVRYGDDFVVVAPDWIQANRALEQITTGLAQLYLTLQPEKTKIFAPDEEFTFLGYQFAGGTVTAPPPVVNEDSEAFSESGSPSRRKTRQPPKLKSRPPKTCNIVKRSQFPIADLDHYWKEPMTTLYITDQGAYLKVEHQQFVVFYQGELRCKVPVNRVSHIVLFGCCNLSHGAVSLALRRRIPVLYLSQKGRYFGRLQTEGQAEVEYLVRQVQCALDPDFTRRQAKSIVLGKLHNSRILLMRLNRRVKSEKAAKAIDSLALLMLDVPDAESIEVLLGYEGHGSHLYFQALGTLFKEPFVFEKRTKRPPTDPVNSLLSLGYTLLSQNMYSMVQTVGLHPHFGNLHVPRNNHPALVSDLMEEFRALLVDSLVAYLVNSKIFVLEDFTPPDERGGVYLFPDALKKYLKHWEERLQSKMTHPHTGYKVSNRRCLELQVWEYIACLMGEQEIYRPMTWKM
>NC_019740.1|WP_015186216.1|4300_7915_-|hypothetical-protein
MAGRSLQASPQGIEKAKNALNRNNLTQKALANERGIASWSTVNKFFNGRPVDRSIFIEICQELNLDWEEIVSPSPSNPAAEEPESEEPSVSFSDPLISTVQRNATRTRRALDPYILPRIRREALLEKCLKAIRHSLQAEKQNVIPIIGSAGYGKSTILGNIYDELEEELANTNSGWIALARCDDLIESVDTFATELGEKISGTRESIAQIAQQLNQQYGKGVLLLDTLDIVLTKPLVPVLRILLFELLESGTTLVFTCRDQDYSYFFEPYHESFAGFRHSVNDGCKIPLFNNDEVKQAAREFVKIKQKANATRSGEEFADKIIALSADSQSLQEITRNPLLLALLCDLFAQEENVPEDLTVSQLYAKYWDWKIAKVRKNLPSMQVCLAKEKLCLEIAEAMYKKSDERLRDSLYESNLNLDETEFLAYSELKSDGVIKEIGGKRIVFFHQTFLEYAIARWLYSTDSGECARKQLKNELKASQNTYSKYYIWAVFRQLLTLVSLSEFYQICDELDKTQLLPFRSVAFASVSRSEPESSSILLPLLAIALTKDYAYQEALLIAANSAPNRHGEMVWQIIVKLLEKVGRELINKTTEIAGELLTRLNTAKRDRFQQALDAVKNRTAKALDSQQELYHIYGQLIATYYNKALPHWERQIDLDVLSLLTDYYFIFGGNVRSLVVDLYLKPGVPELIQRELLLAIVQKPASEQCREKEKVKELLKYLLPNWLSSPDSPFGTSWVEALHTPLDKDWTSVVAGVVGQQAALVPDVLETLIEHLFTDSQSQESKDFNRCNLIAIQEAINSGASNKVASILLKIPITTLLQNRISSLSTLLREIAAPIRGKSQVDPELRLALAQWVVPLVHQHPIELIRVIDALATDSPPVQHLLGQLLQQLLPNLPQNQTNPILKKLSHIPEQLEPYLQQTAKSKESRSALLKIYQRQAEHGSSFALSNILQFCLDESIDVARDASWIILAFAEQHKSINVSQLLPVLARSKIVGVRQNCLKALIAAIDSGLEVTEPEILTVFDTLANEQAPEVVLLLYKLLNCLIWNHLSGNVSISLALAEAALNLTHNLVNEKNQKTLDMVAHSAFISLNQMTNLKDVRLMPQLAEHTRALLRSTDISRKIDKLVITGLLNKLAKHNDKLLEQIVRDDFVIGDRVLPVANMCAVAVAIVHAQGKNAPLLNVLLNDERLPEDVKSRILREQGV
>NC_019740.1|WP_015186215.1|3540_4134_-|ParA-family-protein
MIVTVASFKGGVGKTTSALHLAAYFQDKAPTLLVDGDLNRSALDWASRGNLPFKVVDEKQAVKFAREYEHIIIDTPARPSPDELKIIASGCDLLVLPTSPDALALGATLQMVEALHCLKTNYKILLTLIPPHPNKTGEEAKNAIAKVELPMFSTGIRRLAVFQKAALEGVPVNQVKGDSYAGIAWRCYFEVGKEILP
>NC_019740.1|WP_015186214.1|3274_3544_-|ribbon-helix-helix-protein,-CopG-family
MTNKKDSTRFDALFGATKQKKQTREPTDSKPVRKSKSTDPDYVRTTVYLPKQLHKQLKAAAADEEREMSDIVKELVEQWLKSRSEHSDV
>NC_019740.1|WP_015186212.1|2752_2995_+|CopG-family-transcriptional-regulator
MSVEKGGESGRPLKWGERKARTTFSLTPWAIDELDKIAKRFNLSKSELIEQLTRGRFVLIPKEGETAEVIKKPSGGTSPL
>NC_019740.1|WP_015186223.1|16430_17270_+|CRISPR-associated-protein
MKQNRIVELITDPTKNFLSSFVVGTLLFTVISDGLSALFWETFGDWLQTQLGIEKAILQAAITTILILLILVVIYATNFPQWLKPLIAKFPIFGIKVPDDTNVVPLTTTFPGLITAMSLREDSPAQRVIEHHWNQGQKPHLKHCWLICTNQSLPYAQKMIKKLTDTGMTQTVEFHYGNYELEDLEHPGQKLNLLVPDDVVDDPNYIRRLVNCIYADAKHQGLEESQLIADYTGATKSMTVGIVLACTAPERQLQYISQITDPQMMQVKISYKLKPLEAG
>NC_019740.1|WP_015186224.1|17270_18398_-|CRISPR-associated-endoribonuclease-Cas6
MAQRSLKKDQAGEPNLTWPSSTELVGLVFEVIPQKAATLYPEYTKTLHAWFLDQVRSHDPQLSASLHDDESKKPFTISGLDGKMDTTTGGQLQLLSDQTYYWTVTAFSPTVVQWLGHWLEHLPPAIELRYAPLQIQSVAFALPPTTYAQLYQAEIAKTLTLSFLTPTSFRRKGHHLPLPWPVNVFHSYLRRWNEFSGMPSDDEAFLAWVDESVLISRHQLESVKVAAGKQGKVTGFLGAVEYSLTSEATKQRHFQRLFTALGQLAPYCGTGHKTTFGLGQTRLGWLSKPNSIETLLAQALLAKRVEELTDVLMQGQKRTGGDRAIKVCQTQATILARQEAGESLIAIAQDLDMPYETVKTYVKRARHRLKSEELA
>NC_019740.1|WP_015186225.1|18578_19199_-|hypothetical-protein
MLVTENLTEIQWQMAHTIAQILVKENADVNELGKAIAYLRAYSDRENAGSRFFDYLKTLAKNGRHIGHSQRTSDYYDSIEKACSQYLKAYKDDVAAMLQILGWASRLMRYYANAGSIGEITAPVIESVRQAEIAEVTQSQAFALNQILEAKVLKIKGNKVTYEILGVIKLTEKEPKKASSLVEKQTVQVKITALQNGSIKSVKCVD
>NC_019740.1|WP_015186226.1|19199_20306_-|RAMP-superfamily-protein
MTNNRPQSPRPVSPSTRPTRPNSANAPTGLVAPKPYELVSLPTQSPEKAQPAGQERFKSDRISGKISLRLTVKTASFIASGVVAMGSDLSDKTRSIPLIKTSIEGNQKLLIPGSSFKGVVRSTYEAITRSCLCKVTRKYQSQIPSGYQECTINRQRNQLTVCPACQVFGAMDWQGLVHFTDAKCETTGFSTGFMPSLYRPRPDERKAYFNQQGKVAGRKFYYHAVKAVDKGQQQGIPVQQASKEYTFTTQLRFMNLTPAELGTLLIVLGQDPKNPIALKVGGGKPVGMGTMVVDVTEIKRINNKQEWRDRYCSYDSQPDSLTGKMLEQFIQTAIQAAHTQKLVQDKQLQELKQVLKWPTDREPPEGVY
>NC_019740.1|WP_015186227.1|20302_20743_-|hypothetical-protein
MNPFVGVKEQLLTVEELKNLLQQSSTQPNYYFLRWPHKVSGIVGQLPNEFPSPEGQMFNYDRELRWKQQGQHFSVLLLSTTGAEPGFKPIGQKWETQQRDAHIYPATETRFPKGLSSTNVDVAQRYFMDADTATVHFVALTVAKKQ
>NC_019740.1|WP_015186228.1|20739_21693_-|RAMP-superfamily-protein
MHKRFVNQCTIDLTLVPCGPILIKSGKEGADPTKPDMEFVETYHAGGRSIYLPGSSLKGAIRAHAERIVRTVGRDKRPTNGNALWASNPLNLDELKYLDALSDPKDIYRLSSFTDQMFGNTSIASRVRIEDAYPVDPKQLKVEERNGVAIDRVFGSVAVGPFNYQVCTSGEFRTKIHLKNFSLAQLGLIGLVLRDLNEGWFGLGFAKSRGLGMVEVKLNSAVVQYPGCILENQQIRSLGGQQQWSHTSLLGAGVFLENQERERYGFPAADIQETPIAAESMPLGFGVQLNWQGDNQVQDLFIKAVRSWCRILEGAAA
>NC_019740.1|WP_015186229.1|21722_22343_-|hypothetical-protein
MGFSSYKDIGEVLQEFQVTYTTANFMGAANFSIPDYFREDLEFMIREAVVDNSEFAICENLIYPVIKEVWKLYYSKFVLWSHKSLTYDENLSGFPEYILAKRSPLGKFVFGKPYFLLVEAKQDKFDEGWAQCLAEMVAAQRLNDEVKITIFAIVSNGATWQFGKLEGQIFTQNVTPYTIYELDKLFAAVNYVFQQCEIQLNELVGI
>NC_019740.1|WP_015186230.1|22370_22991_-|hypothetical-protein
MAFSNYKDIATVLKEFQITYTEANFIHKVEFSISDYFREDLETVMQDGVPSASEFSICENLIYPILKEVWKYYRSNFVLWGHKSLTYDENLSGFPEYILARRSPLGKVVFDKPYFLLVEAKQDKFDEGWAQCLAEMVAAQRLNDELRILIFGIVSNGDRWQFGKLKTNIFTLNKTFYTIQELDKLFAAVNYVFQQCELQFSQLVVT
>NC_019740.1|WP_015186231.1|22977_23871_-|CRISPR-associated-RAMP-protein
MFEIFKNRLEIIGTLTTVTALRISAGRSTEPIGSDLPVIKDAFGRPLIPGASFKGALRSRLESFLRGIVGSDRSLVANPAIEEEWSITSTEMKSLKEQNTTDAALTAAIVQNTDLVSHLFGSPWIASKFQVRDLTVLPENWFGQYQERDGVAIDRDTETAADGKLYDYQVVPAGTQFEFKAVVENAQEWELGLLMIGLHQFETEQIPLGGGRSRGLGVVKLDINQMWWFDYPEDKPQELLDYLKRLVQGDKNHYLFTSEQLEAHKHDWTEALIHYLRQTLSQQSTLSTSSGGQDGFQ
>NC_019740.1|WP_015186232.1|23908_25030_-|putative-CRISPR-associated-protein
MTKTVICSVGISAARKVSGVRPSDLTNWVKQKPSVEDAAETLFSTFREFSPEGESLKNNLSAEIHSLVRIGITERDKIILLASSTEDGYCCAIAVKKYLEQYWKGVDVKVEKVKGLQVLDADIFRTTGVIEFVRHIIREVNNYGASNIILNPTGGYKALVPYTVLLGMLKGVKCDYIFEQSTTLLELPPLPVEFKRSQFEAYRSLFETIERETAITQAEWENSVPYAERSWFESLVEFSNGQVTLSAVGFLFLEEMRSPSALVPFLSQKAIRDCFDNLAKLDDCDPFRFLLRVATSKDAFQLSEHINVGNGLRWLKPGRTTDRYLVSVEGWRMLVWRAIREDQEGSNYASTVKVNPDTERRTYSPFMRMDFVD

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Crispr_ID: NC_019740_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_4

30328-30581

TypeIII

Consensus_repeat	Method
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG	PILER-CR
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC	CRISPRCasFinder
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG	CRT

3 spacers

cas10,csm3gr7,csx10gr5,csm2gr11,csm6,PD-DExK,csx19,WYL,csx3

The CRISPR arrays of NC_019740_4

>merge|NC_019740|4|30328-30581|PILER-CR,CRISPRCasFinder,CRT
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACTGTTGGTTGAATAACAGGCGCAGGAGCCTGTTGTGGTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACGTTTGTACCAGGAGTAGAGGTAGGGGGTGTGGTAGTAGTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACGAGAGTCGGAGGAAGTTGGAGGGTTTTCCTCCAAATCGTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG

>NC_019740|4|4|30328-30581|PILER-CR
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACT	GTTGGTTGAATAACAGGCGCAGGAGCCTGTTGTG
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG	TTTGTACCAGGAGTAGAGGTAGGGGGTGTGGTAGTA
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG	AGAGTCGGAGGAAGTTGGAGGGTTTTCCTCCAAATC
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG

>NC_019740|4|3|30328-30580|CRISPRCasFinder
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC	TGTTGGTTGAATAACAGGCGCAGGAGCCTGTTGTG
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC	GTTTGTACCAGGAGTAGAGGTAGGGGGTGTGGTAGTA
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC	GAGAGTCGGAGGAAGTTGGAGGGTTTTCCTCCAAATC
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAAC

>NC_019740|4|3|30328-30581|CRT
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACT	GTTGGTTGAATAACAGGCGCAGGAGCCTGTTGTG
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG	TTTGTACCAGGAGTAGAGGTAGGGGGTGTGGTAGTA
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG	AGAGTCGGAGGAAGTTGGAGGGTTTTCCTCCAAATC
GTTTACGCAAGCACTTCCCCGCAAGGGGATGGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	csx3	pfam09620_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NC_019740.1\|WP_051056028.1\|33329_34355_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_019740.1\|WP_015186233.1\|25075_25489_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	unknown
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_019740.1\|WP_015186229.1\|21722_22343_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015186239.1\|36113_37478_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_019740.1\|WP_015186230.1\|22370_22991_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015186244.1\|40537_43498_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NC_019740.1\|WP_015186235.1\|26807_27524_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_019740.1\|WP_015186242.1\|39173_39761_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_019740.1\|WP_015186237.1\|30816_33204_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NC_019740.1\|WP_015183694.1\|34344_35568_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019740.1\|WP_015186238.1\|35682_35991_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186228.1\|20739_21693_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_019740.1\|WP_015186236.1\|27528_29835_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_019740.1\|WP_015186243.1\|39919_40135_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186227.1\|20302_20743_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	unknown
NC_019740.1\|WP_015186234.1\|25485_26811_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|131722

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	csx3	pfam09620_csx3_CAS-I:CAS-III	3.8e-35	114.6	0.1
NC_019740.1\|WP_015186233.1\|25075_25489_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	8.6e-64	208.6	0.5
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	8.6e-104	341.2	0.0
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	1.3e-77	254.7	0.0
NC_019740.1\|WP_015186229.1\|21722_22343_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	2.9e-60	198.0	0.5
NC_019740.1\|WP_015186239.1\|36113_37478_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	3.9e-176	581.3	2.8
NC_019740.1\|WP_015186230.1\|22370_22991_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	5e-61	200.5	0.6
NC_019740.1\|WP_015186235.1\|26807_27524_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	8.9e-33	108.5	0.0
NC_019740.1\|WP_015186228.1\|20739_21693_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	1.2e-51	170.3	0.0
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	4.7e-42	138.1	0.0
NC_019740.1\|WP_015186236.1\|27528_29835_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	3.3e-110	364.0	1.7
NC_019740.1\|WP_015186227.1\|20302_20743_-\|hypothetical-protein	csx19	cls000059_csx19_CAS-III-D	4.7e-70	228.9	0.1
NC_019740.1\|WP_015186234.1\|25485_26811_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	1.7e-128	424.0	0.0

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	1.52124e-36
NC_019740.1\|WP_051056028.1\|33329_34355_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.37686e-07
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	8.25571e-87
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	4.99441e-45
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	5.49969e-42
NC_019740.1\|WP_015186235.1\|26807_27524_-\|RAMP-superfamily-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.4096e-38
NC_019740.1\|WP_015186242.1\|39173_39761_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.37012e-31
NC_019740.1\|WP_015186228.1\|20739_21693_-\|RAMP-superfamily-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	6.05712e-40
NC_019740.1\|WP_015183694.1\|34344_35568_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.90791e-16
NC_019740.1\|WP_015186244.1\|40537_43498_+\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.00974e-35
NC_019740.1\|WP_015186237.1\|30816_33204_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.41841e-09
NC_019740.1\|WP_015186236.1\|27528_29835_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	2.94934e-58
NC_019740.1\|WP_015186239.1\|36113_37478_-\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	1.11414e-105
NC_019740.1\|WP_015186234.1\|25485_26811_-\|CRISPR-associated-RAMP-protein-Csx10	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	2.28459e-135

>NC_019740.1|WP_015186236.1|27528_29835_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTNSGKSITIAIAWCLAWGEQRQPQFELPVLQQMQQAMQEGKEVPEAVRYLVEQVQQLQAIPKNDFPEQITGLKEKYPDLWQQTTRIGLVYGGATKIKQYVFEAAKLPDIRGASAILDRINLVDIPAFFGEPQKSPRISRWLNKNFPHLEAALIKELLIYYKGGNILAFCPAAFVDDLANAIEKRYTQETLTANSCAVGSTFKLLELRYGLLKDSIEDTPWLEWYHQNHQNPLVKAYFDQPDVDDLSKAFQNRKSFNELAGKLAALFNQRRNGNDVQDGRPTRRYPPMFETHPYLRRDESDRRAAIAPAKRLPGEPWFSDALARKRIVGQRSKGESEQGQKWWTDKNSAWRWQIGQIKQIWNSGKLKSWVVKFKDFLKETNLHNRYYRNVSEQKPDQTVKEARSLREIANASTPKGFVGYIYADGNNMGGYIQKEIKTPEDYQQFSEDIFEATENSVYEALAQHLKPHKLNNLNDADNQHRNETWIHPFEIITIGGDDVLLIVPADKALAIAKTIGEEFEKQLLKPEKQCRYAADKDYKPKLVHRYQAQQVSGSNQCKLSMSTGVLITAEDTPIYYAEKLTTQLLKSAKKRAKELKKEGYCGGTVDFLVMKSVTMISSNIGEFRSQGLMKAGTGQQKLKLYAAPYTLHELGGLLETAKVLKEVNFPRSQLYQIRSFLEQGKNTAILNYRYFRTRLQDKKHQHQLKEQFEEAWCAAKTNNGNLAPWMTLKEEADTTTYETIWRELVDLYPFTEEPKTPSTVQQAVIGSK
>NC_019740.1|WP_015186235.1|26807_27524_-|RAMP-superfamily-protein
MVDLLNLPRNQVQTIRLTAVIDTALCVGAGGSSGSLADKPIIRNAKGQLLIPASQLKGRLRHECEKLARGLGWQIFESPGATSLCPTEEQVEQQFREIYRVPGYRGYHCLVSQIFGNPILPSRIIVDDLVCLQEPEDLPEVLRPGVTINRSRRTAEDKKLYFLETSPAHAQLEFEGAIHLLYPDCPGYAKALIVAGLHHIHALGGSKSAGLGWLHWQELPNIEQNDTVWSSLIPEKTP
>NC_019740.1|WP_015186234.1|25485_26811_-|CRISPR-associated-RAMP-protein-Csx10
MRRIELTITALSPLALGRQKPGGSISEAESYIPGSVIRGAIASQILQRANQRNSDLSQNGGDFQSLFLGENPAIFQNAYPAIAKIGKDQHEAVPDEVQVLPATAVSSKANPGFKSEDDDKPEDKKRGGVFDTLIDRFCADAYNHPYDPSCPKDKGRVEPYTGFYSKTSDNKYRSHSVSTRFLTRVGINRRRATAEEEILYSIEVLNESFLKNTQAKTKDWEPVVYRSVVIANDDLSSKLLQFINDNSGAFSLGGSASRGLGKVKIEAKKTGNSSEVQSRFDSFQNQLKERWNLWSVFGNPKEDLLDSRAYFTIDLQSDAIFTEQWRRTTVISPAMLCEFVSHEFLKRYEAETDKFLKLHVAYSSHDYRSGWNAAWGLMKDVELVTNKGAVYLFSTTKDKENDWVEALKKLEREGVGDRTCEGFGQIQVCNEFHTVFREYPV
>NC_019740.1|WP_015186233.1|25075_25489_-|hypothetical-protein
MSLPTENKIELQVQKGIRQAEDNLVIWIQAALDNTKYGDLEESQFRNLLRVSDTTDSTEVIKNFLRYQVGRDKKWGRGKDSLAEKIVQDIDGNIKKTAQSIAESSQGDFKPIWLELIRRYLGYGSRYLKYLKDGKSL
>NC_019740.1|WP_015186232.1|23908_25030_-|putative-CRISPR-associated-protein
MTKTVICSVGISAARKVSGVRPSDLTNWVKQKPSVEDAAETLFSTFREFSPEGESLKNNLSAEIHSLVRIGITERDKIILLASSTEDGYCCAIAVKKYLEQYWKGVDVKVEKVKGLQVLDADIFRTTGVIEFVRHIIREVNNYGASNIILNPTGGYKALVPYTVLLGMLKGVKCDYIFEQSTTLLELPPLPVEFKRSQFEAYRSLFETIERETAITQAEWENSVPYAERSWFESLVEFSNGQVTLSAVGFLFLEEMRSPSALVPFLSQKAIRDCFDNLAKLDDCDPFRFLLRVATSKDAFQLSEHINVGNGLRWLKPGRTTDRYLVSVEGWRMLVWRAIREDQEGSNYASTVKVNPDTERRTYSPFMRMDFVD
>NC_019740.1|WP_015186231.1|22977_23871_-|CRISPR-associated-RAMP-protein
MFEIFKNRLEIIGTLTTVTALRISAGRSTEPIGSDLPVIKDAFGRPLIPGASFKGALRSRLESFLRGIVGSDRSLVANPAIEEEWSITSTEMKSLKEQNTTDAALTAAIVQNTDLVSHLFGSPWIASKFQVRDLTVLPENWFGQYQERDGVAIDRDTETAADGKLYDYQVVPAGTQFEFKAVVENAQEWELGLLMIGLHQFETEQIPLGGGRSRGLGVVKLDINQMWWFDYPEDKPQELLDYLKRLVQGDKNHYLFTSEQLEAHKHDWTEALIHYLRQTLSQQSTLSTSSGGQDGFQ
>NC_019740.1|WP_015186230.1|22370_22991_-|hypothetical-protein
MAFSNYKDIATVLKEFQITYTEANFIHKVEFSISDYFREDLETVMQDGVPSASEFSICENLIYPILKEVWKYYRSNFVLWGHKSLTYDENLSGFPEYILARRSPLGKVVFDKPYFLLVEAKQDKFDEGWAQCLAEMVAAQRLNDELRILIFGIVSNGDRWQFGKLKTNIFTLNKTFYTIQELDKLFAAVNYVFQQCELQFSQLVVT
>NC_019740.1|WP_015186229.1|21722_22343_-|hypothetical-protein
MGFSSYKDIGEVLQEFQVTYTTANFMGAANFSIPDYFREDLEFMIREAVVDNSEFAICENLIYPVIKEVWKLYYSKFVLWSHKSLTYDENLSGFPEYILAKRSPLGKFVFGKPYFLLVEAKQDKFDEGWAQCLAEMVAAQRLNDEVKITIFAIVSNGATWQFGKLEGQIFTQNVTPYTIYELDKLFAAVNYVFQQCEIQLNELVGI
>NC_019740.1|WP_015186228.1|20739_21693_-|RAMP-superfamily-protein
MHKRFVNQCTIDLTLVPCGPILIKSGKEGADPTKPDMEFVETYHAGGRSIYLPGSSLKGAIRAHAERIVRTVGRDKRPTNGNALWASNPLNLDELKYLDALSDPKDIYRLSSFTDQMFGNTSIASRVRIEDAYPVDPKQLKVEERNGVAIDRVFGSVAVGPFNYQVCTSGEFRTKIHLKNFSLAQLGLIGLVLRDLNEGWFGLGFAKSRGLGMVEVKLNSAVVQYPGCILENQQIRSLGGQQQWSHTSLLGAGVFLENQERERYGFPAADIQETPIAAESMPLGFGVQLNWQGDNQVQDLFIKAVRSWCRILEGAAA
>NC_019740.1|WP_015186227.1|20302_20743_-|hypothetical-protein
MNPFVGVKEQLLTVEELKNLLQQSSTQPNYYFLRWPHKVSGIVGQLPNEFPSPEGQMFNYDRELRWKQQGQHFSVLLLSTTGAEPGFKPIGQKWETQQRDAHIYPATETRFPKGLSSTNVDVAQRYFMDADTATVHFVALTVAKKQ
>NC_019740.1|WP_015186237.1|30816_33204_+|DDE-type-integrase/transposase/recombinase
MLDGEQFVRWCQQLALAEPTRKYIELLRSSPPARVVRSRAGNVSGRYPSRKMGVTIQFESHHNELAGIYEMEYDPDVLEYYDQPSGLKLSYQALCGRKVGVLHTPDFFVLRQTSAGWEEWKTLDELVRLSAKMPARYVKEIEGQWHCPPGEEVAQSLGLYYRIRCNAEIDWVFQNNLHFLEDYLQPSHLDLEENVRANITLLVELHPGITLGELLQQGYNCDEVYTLIAQNHLKVNWRGVNIAQLGSQRQIFPASQKVCQTETTKWRRASTLELAPNLVDLKPGSPVVWNGKSLSILNRGETHTALLNEEEKVIQLPNVALLELVKQGELTGVVTHSLPSAKEVNDLLAKASVDDCAQANRRYSIIAPYLTGELQTSNQVVSTRTIRRWLHSWQKAQEQYGCGYVGLLPRVSSKGNRQSKLPEATQKIVDEFIANNYLNLKQQGKFAVYSSLVRACEQQGITPCSYKTFVRNIHQKSNYEQALKRQGRRAAYKHEPFYWELEVNTPRHGQRPFEICHIDHTQLDIELVSSHTSVNLGRPWATFLTDAYSRRILAVYLCFDPPSYRSCMMVMRECVRRHGRLPHTIVVDGAKEFMSVYFERLLAAYSCTKKTRPAAKPRFGSVCERLFGTANTMLIHNLQGNTQINKNSRAVTKSVNPRNLAIWTLGSLYQNLCDWAYEFYDNKEHPALLKSPRAAFSDGLLQTGLRPHKLIPYDETFRILTLPTTSKGTAKVIPNQGVKINHIYYWHNSFRNPEIEKTQVLVRYDPNDVGIAYAYIKGQWVNCISQHYSSLAGHS
>NC_019740.1|WP_051056028.1|33329_34355_+|AAA-family-ATPase
MFGPTGVGKTTLLHQVVKVLIEQNSRAMQLDCGHIPVAYVEARAPESGSFDWKDYYKSVLIALADPFVDYKLRTGSSRIEGRGSAQRLVKSRANLSDLREDVAAIIQQRRLIVFLVDEAQRFTKMASGRRQQDQMDAIQSMASFTSTRHGLFGTYELLQLRNLSGQLSRRSLDIHFPRYQADCSQDVKDFKRVLKSFACQMPLLEVPDLEQHWEYFYERSIGCVGIVKDWLTQALRKALGESASTLSLAHLTPYAPSVSKCMQMATEAIEGEKALLQSESELSRLRQKLGLTVKEPPTATEALLNSPTRSTANKKDKKTKKRRPGERNPQRDVIGGAPSVS
>NC_019740.1|WP_015183694.1|34344_35568_+|TniQ-family-protein
MSVESWSNHQLWYSKTTTIPERSRLHPLEPIGVGTPTVESLTSYVARLAAAHRVPTGILLAQEVAQQVSRYQGNQHQGLSRWFFRVFFNDTGAWNGMGIMASEPVHVLEARTKQHQLRFLTLLRWANVLPSRGLLRTNKAWCPVCYDDWERCGKPIYEPLLWSLQVVTTCPVHQQVLWHQCPNCRRSLYPLEWNSRPGFCSRCQQWLGVSSFLSTGETSFDASPVEPPDWEWQIFVVYSVGKILEQAPFLESVPARENLAFCIDLCIQKATNGNAKAFAELMYLSASVPGEWRCGQALAQLGLLLRVCWCLSIPLVDFLTGRVVIEQPLSLKVLPITQQRRKTNRRFDALKVQMFLEAALSFEPPQSLKQVAATIGYDPGDISRFFPDLCHQISARYRLYRQAIRKS
>NC_019740.1|WP_015186238.1|35682_35991_+|hypothetical-protein
MLPLWTGYGSSDTFQVKFTQALPRKGMETFSYLTLGMGHFWVYTSTSPQGDGNLLVVGVIVMQLFFPKPLPRKGTETFHKLRRIYSDSVEQGTVRPNPQPPH
>NC_019740.1|WP_015186239.1|36113_37478_-|TIGR03985-family-CRISPR-associated-protein
MSRPIFRDSPSVELLQWLARGSLKQNLSRAVRLWVWLRLLYGDESERLDLPDSFSYSQWRDAFFSPTHPKGEEVPQHRDSRCPCNKSARHWLFGSGTGILEADWRHFIGHHGGIDEKTLGSWLQTPLFAITRRMLAGDLQTLSQLQWLKYDKRKYHRVQSLPVRPMTSGDVPKERQLATYDLNFLPPDLALIAQNYSQQIDGIQRFFIHVDYVVPPEMLDKVDDFQEQLRNLWAQTCVPPVLLVYRSAKLDRNVECVVYPVCIYYVQRATYLCALGQNPDGEINWWNYRLDRLESLISLNWADERIAPSLVQQYRDKTLPTPDYIQEQMAQVWGFDYYQRASLLLLRFDRIHDRRYIQGTVRHETFESVSYAEAKRLIKKLTHLPERETLLGILARCPQDAYYSATYREGDPNVLQRLQAWRPFVEVLLPWALRQRVAADVEKEWGLYHRSEDS
>NC_019740.1|WP_015186240.1|37552_37882_+|CRISPR-associated-protein-Csx3
MSAIQLELIPHQTADGLAYQHLRIHLTSPDGIIEPEDLKGLKLPEGIASSQGVVMEGRGPIWLYGYLVHECHATPWVACYDPRLEGAVVVEAHTRGVSVGSVLKLSLPK
>NC_019740.1|WP_015186241.1|37957_38860_+|CRISPR-associated-protein-Csx3
MIATSKKPLQLTVTQVTARNGNCYQCLEIDITVPELKPATLAKLELPADLDLNQGVVLWGSAPIWLYSNLVKRCTSAPWIGCYNVPLGSFVVVASRCPQMRVGDAVELVNKSQCSAILIGGPPDSGKSVLCYALSCNLKQEASDKKIFLQRAQWDGEGNWFAQMKNRPLAEELSTRSRAKGSEQFFLYHADAVSNVREVMELVLVDFGGMPQPRDVILLHRCTHYIIISSKPEEISKWHDFCGKRGGLKPLAVIHSVREKRLEVLPNQKFLEMIAGPWERGETLSVPDELLQGVLNLARR
>NC_019740.1|WP_015186242.1|39173_39761_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MLQQATVKLTERFENALVYATRLHAEQIRKATGVPYISHLLSVTALVLEDGGDEDEAIAALLHDAVEDQGGKATRAEIYRLFGERVGAIVDGCTEFDSEIKPPWYERKQHYIEQLRQGSPAVRRVALADKLHNARTIVQDYRQQGEAIWSVFSTGKEGMLWFYHSLLKMYREIAPTPMVEELARVVGELEQLGES
>NC_019740.1|WP_015186243.1|39919_40135_+|hypothetical-protein
MPPDASTLTAIDELFERCKTTLLQTWKETGFGHIEIDSERVNPNKIRVILRGSTHYRYVFTDADVEEWNSR
>NC_019740.1|WP_015186244.1|40537_43498_+|S8-family-serine-peptidase
MIDDSLVTNSQDLLNPSVTFSTSDFGSSVESSDLITPQSALNISPNVGFSQDAINLEIQAVSITDNLVPPDSLFLSSSADSLTLETVSSVTEPIALSPDLLTGQTIFNSGVFTVGNTGEVGIDFLFDGGDYQGELAIFNLEGMDKYEPGSEGFIAEAARRALSNSSLGYVVISDAVEGARFSGALPHEANFNSGQYQGVQTFSLNPGEQFGVMLVPNGTVQQVVDNPELCSNVRPLFSLGTANPNDAFHVGQIADVTGEGNTFVFEDLRVDTGSDRDYNDIVFQVRGATGQATRLDDVIASDKDWRTTNMGQALLSYIQPYIAPTDSGVIPENLPVIPTTPVNPIQFEFPQSAQPLVGIIDTGFAVNNPDIDYSRISLGQDRVEGDADPLLQSGEGNEHGTHVLGIIAATQNNNIGIDGVNDNAPIWLGRAVGSGQWAESLVEFVDTAKTSEQPNAVVNLSFDLTQVNPDGSVTTRDEFTPQEWAALEYAHQNGVIVVAAAGNEGGAMSALGQASQTFDNIITVGAAENFDRFVSVAQGVDRTGYSSYGAGLDILADGGTPDNPTLSTVGDGLGTMAGTSIAAAKVTGTLSQVWAANPELSYRQVIEILKSTATDLNVPNADTETGAGLLNPVAAVYLAQATTPLASDPLPVAPLPEFWSEPSTASERPTAALFRGKYYDWVPYTVQSGDTLSEIAQTTMGNGSAPYYSFIAEHNGIANPHLLQAGQQILIPTGISAPTEFMGKYYNWVPYTIQSGDTLSEIAQTTMGNSSAPYYNFIAQKNGIADPNVIDAGQQILVPAEVATPTNPNPQPTPTPQPLPSPGGSGPGNLLNLPVNQQRQNLGVNPQSSFYQSGGNKFAAANGTGGTYLWCTDYAFGRALEKGLIQGSSGIGGAIRGNAGDWDNNARSAGYADRVQFQPRANSFIIWEAYTADAGSVGHVGFVEAVYSDGSFLVSESNWGNPAMSFHLRHVRPGTPAYSNAKFIYL

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Crispr_ID: NC_019740_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_5

35746-35912

TypeIII

Consensus_repeat	Method
CTTCCCCGCAAGGGGATGGAAAC	CRISPRCasFinder

2 spacers

cas10,csm3gr7,csx10gr5,csm2gr11,csm6,PD-DExK,WYL,csx3,cas3

The CRISPR arrays of NC_019740_5

>merge|NC_019740|5|35746-35912|CRISPRCasFinder
CTTCCCCGCAAGGGGATGGAAACCTTTTCATACCTAACATTAGGTATGGGTCACTTTTGGGTTTACACAAGCACTTCCCCGCAAGGGGATGGAAACCTATTGGTGGTTGGGGTGATTGTGATGCAGTTGTTCTTTCCGAAACCTCTTCCCCGCAAGGGGACGGAAAC

>NC_019740|5|4|35746-35912|CRISPRCasFinder
CTTCCCCGCAAGGGGATGGAAAC	CTTTTCATACCTAACATTAGGTATGGGTCACTTTTGGGTTTACACAAGCA
CTTCCCCGCAAGGGGATGGAAAC	CTATTGGTGGTTGGGGTGATTGTGATGCAGTTGTTCTTTCCGAAACCT
CTTCCCCGCAAGGGGACGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NC_019740.1\|WP_051056028.1\|33329_34355_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_019740.1\|WP_015186233.1\|25075_25489_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	unknown
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	csx3	pfam09620_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NC_019740.1\|WP_015186245.1\|43728_44349_+\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_019740.1\|WP_015186230.1\|22370_22991_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015186235.1\|26807_27524_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_019740.1\|WP_015186242.1\|39173_39761_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_019740.1\|WP_015186237.1\|30816_33204_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_019740.1\|WP_015183694.1\|34344_35568_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019740.1\|WP_015186244.1\|40537_43498_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NC_019740.1\|WP_015186246.1\|44487_45108_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_019740.1\|WP_015186236.1\|27528_29835_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|274208
NC_019740.1\|WP_015186243.1\|39919_40135_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186239.1\|36113_37478_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NC_019740.1\|WP_015186234.1\|25485_26811_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|131722

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	8.6e-104	341.2	0.0
NC_019740.1\|WP_015186233.1\|25075_25489_-\|hypothetical-protein	csm2gr11	mkCas0063_csm2gr11_CAS-III-D	8.6e-64	208.6	0.5
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	8.1e-39	128.1	1.0
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	1.3e-77	254.7	0.0
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	csx3	pfam09620_csx3_CAS-I:CAS-III	3.8e-35	114.6	0.1
NC_019740.1\|WP_015186245.1\|43728_44349_+\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	2.3e-62	204.9	0.4
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	4.7e-42	138.1	0.0
NC_019740.1\|WP_015186230.1\|22370_22991_-\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	5e-61	200.5	0.6
NC_019740.1\|WP_015186235.1\|26807_27524_-\|RAMP-superfamily-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	8.9e-33	108.5	0.0
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	2.7e-28	93.3	0.5
NC_019740.1\|WP_015186236.1\|27528_29835_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	3.3e-110	364.0	1.7
NC_019740.1\|WP_015186239.1\|36113_37478_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	3.9e-176	581.3	2.8
NC_019740.1\|WP_015186234.1\|25485_26811_-\|CRISPR-associated-RAMP-protein-Csx10	csx10gr5	cd09700_csx10gr5_CAS-III-D	1.7e-128	424.0	0.0

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	1.52124e-36
NC_019740.1\|WP_051056028.1\|33329_34355_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.37686e-07
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.34622e-27
NC_019740.1\|WP_015186231.1\|22977_23871_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	8.25571e-87
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	4.99441e-45
NC_019740.1\|WP_015186232.1\|23908_25030_-\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	5.49969e-42
NC_019740.1\|WP_015186235.1\|26807_27524_-\|RAMP-superfamily-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.4096e-38
NC_019740.1\|WP_015186242.1\|39173_39761_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.37012e-31
NC_019740.1\|WP_015186237.1\|30816_33204_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.41841e-09
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.13552e-21
NC_019740.1\|WP_015183694.1\|34344_35568_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.90791e-16
NC_019740.1\|WP_015186244.1\|40537_43498_+\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.00974e-35
NC_019740.1\|WP_015186246.1\|44487_45108_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.2077e-17
NC_019740.1\|WP_015186236.1\|27528_29835_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	2.94934e-58
NC_019740.1\|WP_015186239.1\|36113_37478_-\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	1.11414e-105
NC_019740.1\|WP_015186234.1\|25485_26811_-\|CRISPR-associated-RAMP-protein-Csx10	gnl\|CDD\|131722	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family. CRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily (pfam03787).	2.28459e-135

>NC_019740.1|WP_015183694.1|34344_35568_+|TniQ-family-protein
MSVESWSNHQLWYSKTTTIPERSRLHPLEPIGVGTPTVESLTSYVARLAAAHRVPTGILLAQEVAQQVSRYQGNQHQGLSRWFFRVFFNDTGAWNGMGIMASEPVHVLEARTKQHQLRFLTLLRWANVLPSRGLLRTNKAWCPVCYDDWERCGKPIYEPLLWSLQVVTTCPVHQQVLWHQCPNCRRSLYPLEWNSRPGFCSRCQQWLGVSSFLSTGETSFDASPVEPPDWEWQIFVVYSVGKILEQAPFLESVPARENLAFCIDLCIQKATNGNAKAFAELMYLSASVPGEWRCGQALAQLGLLLRVCWCLSIPLVDFLTGRVVIEQPLSLKVLPITQQRRKTNRRFDALKVQMFLEAALSFEPPQSLKQVAATIGYDPGDISRFFPDLCHQISARYRLYRQAIRKS
>NC_019740.1|WP_051056028.1|33329_34355_+|AAA-family-ATPase
MFGPTGVGKTTLLHQVVKVLIEQNSRAMQLDCGHIPVAYVEARAPESGSFDWKDYYKSVLIALADPFVDYKLRTGSSRIEGRGSAQRLVKSRANLSDLREDVAAIIQQRRLIVFLVDEAQRFTKMASGRRQQDQMDAIQSMASFTSTRHGLFGTYELLQLRNLSGQLSRRSLDIHFPRYQADCSQDVKDFKRVLKSFACQMPLLEVPDLEQHWEYFYERSIGCVGIVKDWLTQALRKALGESASTLSLAHLTPYAPSVSKCMQMATEAIEGEKALLQSESELSRLRQKLGLTVKEPPTATEALLNSPTRSTANKKDKKTKKRRPGERNPQRDVIGGAPSVS
>NC_019740.1|WP_015186237.1|30816_33204_+|DDE-type-integrase/transposase/recombinase
MLDGEQFVRWCQQLALAEPTRKYIELLRSSPPARVVRSRAGNVSGRYPSRKMGVTIQFESHHNELAGIYEMEYDPDVLEYYDQPSGLKLSYQALCGRKVGVLHTPDFFVLRQTSAGWEEWKTLDELVRLSAKMPARYVKEIEGQWHCPPGEEVAQSLGLYYRIRCNAEIDWVFQNNLHFLEDYLQPSHLDLEENVRANITLLVELHPGITLGELLQQGYNCDEVYTLIAQNHLKVNWRGVNIAQLGSQRQIFPASQKVCQTETTKWRRASTLELAPNLVDLKPGSPVVWNGKSLSILNRGETHTALLNEEEKVIQLPNVALLELVKQGELTGVVTHSLPSAKEVNDLLAKASVDDCAQANRRYSIIAPYLTGELQTSNQVVSTRTIRRWLHSWQKAQEQYGCGYVGLLPRVSSKGNRQSKLPEATQKIVDEFIANNYLNLKQQGKFAVYSSLVRACEQQGITPCSYKTFVRNIHQKSNYEQALKRQGRRAAYKHEPFYWELEVNTPRHGQRPFEICHIDHTQLDIELVSSHTSVNLGRPWATFLTDAYSRRILAVYLCFDPPSYRSCMMVMRECVRRHGRLPHTIVVDGAKEFMSVYFERLLAAYSCTKKTRPAAKPRFGSVCERLFGTANTMLIHNLQGNTQINKNSRAVTKSVNPRNLAIWTLGSLYQNLCDWAYEFYDNKEHPALLKSPRAAFSDGLLQTGLRPHKLIPYDETFRILTLPTTSKGTAKVIPNQGVKINHIYYWHNSFRNPEIEKTQVLVRYDPNDVGIAYAYIKGQWVNCISQHYSSLAGHS
>NC_019740.1|WP_015186236.1|27528_29835_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTNSGKSITIAIAWCLAWGEQRQPQFELPVLQQMQQAMQEGKEVPEAVRYLVEQVQQLQAIPKNDFPEQITGLKEKYPDLWQQTTRIGLVYGGATKIKQYVFEAAKLPDIRGASAILDRINLVDIPAFFGEPQKSPRISRWLNKNFPHLEAALIKELLIYYKGGNILAFCPAAFVDDLANAIEKRYTQETLTANSCAVGSTFKLLELRYGLLKDSIEDTPWLEWYHQNHQNPLVKAYFDQPDVDDLSKAFQNRKSFNELAGKLAALFNQRRNGNDVQDGRPTRRYPPMFETHPYLRRDESDRRAAIAPAKRLPGEPWFSDALARKRIVGQRSKGESEQGQKWWTDKNSAWRWQIGQIKQIWNSGKLKSWVVKFKDFLKETNLHNRYYRNVSEQKPDQTVKEARSLREIANASTPKGFVGYIYADGNNMGGYIQKEIKTPEDYQQFSEDIFEATENSVYEALAQHLKPHKLNNLNDADNQHRNETWIHPFEIITIGGDDVLLIVPADKALAIAKTIGEEFEKQLLKPEKQCRYAADKDYKPKLVHRYQAQQVSGSNQCKLSMSTGVLITAEDTPIYYAEKLTTQLLKSAKKRAKELKKEGYCGGTVDFLVMKSVTMISSNIGEFRSQGLMKAGTGQQKLKLYAAPYTLHELGGLLETAKVLKEVNFPRSQLYQIRSFLEQGKNTAILNYRYFRTRLQDKKHQHQLKEQFEEAWCAAKTNNGNLAPWMTLKEEADTTTYETIWRELVDLYPFTEEPKTPSTVQQAVIGSK
>NC_019740.1|WP_015186235.1|26807_27524_-|RAMP-superfamily-protein
MVDLLNLPRNQVQTIRLTAVIDTALCVGAGGSSGSLADKPIIRNAKGQLLIPASQLKGRLRHECEKLARGLGWQIFESPGATSLCPTEEQVEQQFREIYRVPGYRGYHCLVSQIFGNPILPSRIIVDDLVCLQEPEDLPEVLRPGVTINRSRRTAEDKKLYFLETSPAHAQLEFEGAIHLLYPDCPGYAKALIVAGLHHIHALGGSKSAGLGWLHWQELPNIEQNDTVWSSLIPEKTP
>NC_019740.1|WP_015186234.1|25485_26811_-|CRISPR-associated-RAMP-protein-Csx10
MRRIELTITALSPLALGRQKPGGSISEAESYIPGSVIRGAIASQILQRANQRNSDLSQNGGDFQSLFLGENPAIFQNAYPAIAKIGKDQHEAVPDEVQVLPATAVSSKANPGFKSEDDDKPEDKKRGGVFDTLIDRFCADAYNHPYDPSCPKDKGRVEPYTGFYSKTSDNKYRSHSVSTRFLTRVGINRRRATAEEEILYSIEVLNESFLKNTQAKTKDWEPVVYRSVVIANDDLSSKLLQFINDNSGAFSLGGSASRGLGKVKIEAKKTGNSSEVQSRFDSFQNQLKERWNLWSVFGNPKEDLLDSRAYFTIDLQSDAIFTEQWRRTTVISPAMLCEFVSHEFLKRYEAETDKFLKLHVAYSSHDYRSGWNAAWGLMKDVELVTNKGAVYLFSTTKDKENDWVEALKKLEREGVGDRTCEGFGQIQVCNEFHTVFREYPV
>NC_019740.1|WP_015186233.1|25075_25489_-|hypothetical-protein
MSLPTENKIELQVQKGIRQAEDNLVIWIQAALDNTKYGDLEESQFRNLLRVSDTTDSTEVIKNFLRYQVGRDKKWGRGKDSLAEKIVQDIDGNIKKTAQSIAESSQGDFKPIWLELIRRYLGYGSRYLKYLKDGKSL
>NC_019740.1|WP_015186232.1|23908_25030_-|putative-CRISPR-associated-protein
MTKTVICSVGISAARKVSGVRPSDLTNWVKQKPSVEDAAETLFSTFREFSPEGESLKNNLSAEIHSLVRIGITERDKIILLASSTEDGYCCAIAVKKYLEQYWKGVDVKVEKVKGLQVLDADIFRTTGVIEFVRHIIREVNNYGASNIILNPTGGYKALVPYTVLLGMLKGVKCDYIFEQSTTLLELPPLPVEFKRSQFEAYRSLFETIERETAITQAEWENSVPYAERSWFESLVEFSNGQVTLSAVGFLFLEEMRSPSALVPFLSQKAIRDCFDNLAKLDDCDPFRFLLRVATSKDAFQLSEHINVGNGLRWLKPGRTTDRYLVSVEGWRMLVWRAIREDQEGSNYASTVKVNPDTERRTYSPFMRMDFVD
>NC_019740.1|WP_015186231.1|22977_23871_-|CRISPR-associated-RAMP-protein
MFEIFKNRLEIIGTLTTVTALRISAGRSTEPIGSDLPVIKDAFGRPLIPGASFKGALRSRLESFLRGIVGSDRSLVANPAIEEEWSITSTEMKSLKEQNTTDAALTAAIVQNTDLVSHLFGSPWIASKFQVRDLTVLPENWFGQYQERDGVAIDRDTETAADGKLYDYQVVPAGTQFEFKAVVENAQEWELGLLMIGLHQFETEQIPLGGGRSRGLGVVKLDINQMWWFDYPEDKPQELLDYLKRLVQGDKNHYLFTSEQLEAHKHDWTEALIHYLRQTLSQQSTLSTSSGGQDGFQ
>NC_019740.1|WP_015186230.1|22370_22991_-|hypothetical-protein
MAFSNYKDIATVLKEFQITYTEANFIHKVEFSISDYFREDLETVMQDGVPSASEFSICENLIYPILKEVWKYYRSNFVLWGHKSLTYDENLSGFPEYILARRSPLGKVVFDKPYFLLVEAKQDKFDEGWAQCLAEMVAAQRLNDELRILIFGIVSNGDRWQFGKLKTNIFTLNKTFYTIQELDKLFAAVNYVFQQCELQFSQLVVT
>NC_019740.1|WP_015186239.1|36113_37478_-|TIGR03985-family-CRISPR-associated-protein
MSRPIFRDSPSVELLQWLARGSLKQNLSRAVRLWVWLRLLYGDESERLDLPDSFSYSQWRDAFFSPTHPKGEEVPQHRDSRCPCNKSARHWLFGSGTGILEADWRHFIGHHGGIDEKTLGSWLQTPLFAITRRMLAGDLQTLSQLQWLKYDKRKYHRVQSLPVRPMTSGDVPKERQLATYDLNFLPPDLALIAQNYSQQIDGIQRFFIHVDYVVPPEMLDKVDDFQEQLRNLWAQTCVPPVLLVYRSAKLDRNVECVVYPVCIYYVQRATYLCALGQNPDGEINWWNYRLDRLESLISLNWADERIAPSLVQQYRDKTLPTPDYIQEQMAQVWGFDYYQRASLLLLRFDRIHDRRYIQGTVRHETFESVSYAEAKRLIKKLTHLPERETLLGILARCPQDAYYSATYREGDPNVLQRLQAWRPFVEVLLPWALRQRVAADVEKEWGLYHRSEDS
>NC_019740.1|WP_015186240.1|37552_37882_+|CRISPR-associated-protein-Csx3
MSAIQLELIPHQTADGLAYQHLRIHLTSPDGIIEPEDLKGLKLPEGIASSQGVVMEGRGPIWLYGYLVHECHATPWVACYDPRLEGAVVVEAHTRGVSVGSVLKLSLPK
>NC_019740.1|WP_015186241.1|37957_38860_+|CRISPR-associated-protein-Csx3
MIATSKKPLQLTVTQVTARNGNCYQCLEIDITVPELKPATLAKLELPADLDLNQGVVLWGSAPIWLYSNLVKRCTSAPWIGCYNVPLGSFVVVASRCPQMRVGDAVELVNKSQCSAILIGGPPDSGKSVLCYALSCNLKQEASDKKIFLQRAQWDGEGNWFAQMKNRPLAEELSTRSRAKGSEQFFLYHADAVSNVREVMELVLVDFGGMPQPRDVILLHRCTHYIIISSKPEEISKWHDFCGKRGGLKPLAVIHSVREKRLEVLPNQKFLEMIAGPWERGETLSVPDELLQGVLNLARR
>NC_019740.1|WP_015186242.1|39173_39761_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MLQQATVKLTERFENALVYATRLHAEQIRKATGVPYISHLLSVTALVLEDGGDEDEAIAALLHDAVEDQGGKATRAEIYRLFGERVGAIVDGCTEFDSEIKPPWYERKQHYIEQLRQGSPAVRRVALADKLHNARTIVQDYRQQGEAIWSVFSTGKEGMLWFYHSLLKMYREIAPTPMVEELARVVGELEQLGES
>NC_019740.1|WP_015186243.1|39919_40135_+|hypothetical-protein
MPPDASTLTAIDELFERCKTTLLQTWKETGFGHIEIDSERVNPNKIRVILRGSTHYRYVFTDADVEEWNSR
>NC_019740.1|WP_015186244.1|40537_43498_+|S8-family-serine-peptidase
MIDDSLVTNSQDLLNPSVTFSTSDFGSSVESSDLITPQSALNISPNVGFSQDAINLEIQAVSITDNLVPPDSLFLSSSADSLTLETVSSVTEPIALSPDLLTGQTIFNSGVFTVGNTGEVGIDFLFDGGDYQGELAIFNLEGMDKYEPGSEGFIAEAARRALSNSSLGYVVISDAVEGARFSGALPHEANFNSGQYQGVQTFSLNPGEQFGVMLVPNGTVQQVVDNPELCSNVRPLFSLGTANPNDAFHVGQIADVTGEGNTFVFEDLRVDTGSDRDYNDIVFQVRGATGQATRLDDVIASDKDWRTTNMGQALLSYIQPYIAPTDSGVIPENLPVIPTTPVNPIQFEFPQSAQPLVGIIDTGFAVNNPDIDYSRISLGQDRVEGDADPLLQSGEGNEHGTHVLGIIAATQNNNIGIDGVNDNAPIWLGRAVGSGQWAESLVEFVDTAKTSEQPNAVVNLSFDLTQVNPDGSVTTRDEFTPQEWAALEYAHQNGVIVVAAAGNEGGAMSALGQASQTFDNIITVGAAENFDRFVSVAQGVDRTGYSSYGAGLDILADGGTPDNPTLSTVGDGLGTMAGTSIAAAKVTGTLSQVWAANPELSYRQVIEILKSTATDLNVPNADTETGAGLLNPVAAVYLAQATTPLASDPLPVAPLPEFWSEPSTASERPTAALFRGKYYDWVPYTVQSGDTLSEIAQTTMGNGSAPYYSFIAEHNGIANPHLLQAGQQILIPTGISAPTEFMGKYYNWVPYTIQSGDTLSEIAQTTMGNSSAPYYNFIAQKNGIADPNVIDAGQQILVPAEVATPTNPNPQPTPTPQPLPSPGGSGPGNLLNLPVNQQRQNLGVNPQSSFYQSGGNKFAAANGTGGTYLWCTDYAFGRALEKGLIQGSSGIGGAIRGNAGDWDNNARSAGYADRVQFQPRANSFIIWEAYTADAGSVGHVGFVEAVYSDGSFLVSESNWGNPAMSFHLRHVRPGTPAYSNAKFIYL
>NC_019740.1|WP_015186245.1|43728_44349_+|hypothetical-protein
MAFSSYKSISAVVKEFQVKYTEAEFINEIEFNIPDYFREDLQTVMREGVVDNSEFAICENLIYPVLKEVWKCYRSKFLLWSHESLTYDENLSGFPEYILAKRSPLGKVVFDKPYLLLVEAKQDKFEEGWGQCLAEMIAAQRLNEDPQMTVFGIVSNGAIWQFGKLKADIFTRNITLYSIQELDKLFAAVNYIFRQCELQLDEKVAA
>NC_019740.1|WP_015186246.1|44487_45108_-|Uma2-family-endonuclease
MLLTQRRADRVVLHNISWQQFENLLVDLGESRAARVAYDDGTLEIMTPLPEHEYYKEVIGDSIKEIAEVLDQDYESLGSTTWKREIKKAGVEPDNCFYFQNEPRIRGKLEYDLNQDPPPDLALEIDVTSKSLSRFSIYARLGVPEIWCYDSGELKIYQLQNEGYIEVETSSVFPTLRVQELPAIIEQYRPQGRRAIRRAVREWARE
>NC_019740.1|WP_071884149.1|45150_45864_+|DEAD/DEAH-box-helicase
MTIAQFFQTLTGFPPRQFQREAIAHLLNRQDVILRAPTGSGKTETAIAPFLFAKTLQCDFPNKLIYVVPLRTLANSLRQRAETLARTWETFIEERRGEGETRRRGEFYTDIPASPCPRVPVSHQQPSRPLVVTLQTGENPEDPRFEGDIVFCTIDQMLSSFLNIPYSVGRGSANVNAGAIFASYLVFDELHLLDPDRSFATVLKVLEQVKGISPFLLMTATLTDELATQIKRLIDGS
>NC_019740.1|WP_041781558.1|45960_48123_+|CRISPR-associated-helicase-Cas3'
MEIIRVEDADLQEIEGNRCRTFRGISEPLTAEFILNDIKHYQRQRVIIICNTVSQAQGLFRDLDELNQDRELTITLLHSRFLPEDRAKKEAYLKETFAQNWQQDKDNTCHVLISTQVIEAGLNITCEVMHTHLCPMNSLLQRAGRCARFRGERGEVYVYRSFQVNSVNAELAEADLEDELETSTDTELCSNLVDRRDKGDKGEKILCMNATYSEKKQSFLPYTNEICELTWAVLQEHTASERINENVGFRIEEQWINKVHTPETLLQQERRANNQMNFEQQFNAACFRGDESTANELIRFVDARSVFVWEEPIFLDEEPIDPKQLLAFSVPISTLCKVWQDVKNLGYEIDWMFKRIEHPKGRATETYSQPVCIPITSRESLVNSVRILVNPRYVYYDDQIGLLIGPDVFSNRFSSPDKPKRKLQSEYCYRMDTYVGHLVLMWKCWREAFPTTLKRNGELVETQISSVRDELLQAGGQFIQAKIFPDASENEAKALFEYLVFFAVLTHDLGKLQVKWQEVMRGWQAIAHSSFNGTNPRSHLLAHTDYDPEDKAQRDQLKTYEKKHKRPNHAVESAFLSREILKNSLFPLLRDRFGADSEQIPYICHAIMMASGRHHSAWAGGWKMGDVAKVGKILLHPEARYAIASSWRSMARFLPETLPLQPANLSREVYAVTKEFDLNRFDTAQIEYLQLYSLVVRALRLCDQRSVQLLPVKRAIEAKS

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Crispr_ID: NC_019740_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_6

48978-49085

Unclear

Consensus_repeat	Method
GTTTCAGTCCCCTTACGGGGATTAAGTTCGTG	CRISPRCasFinder

1 spacers

cas3,PD-DExK,csx3,cas6,cas4,cas1

The CRISPR arrays of NC_019740_6

>merge|NC_019740|6|48978-49085|CRISPRCasFinder
GTTTCAGTCCCCTTACGGGGATTAAGTTCGTGAAAAGAGGGGTTAATGAAGATTTAGAGGAGGTAAGTGGTGGGGTGTTTCAGTCCCCTTGCGGGGATTAAGTTCGTG

>NC_019740|6|5|48978-49085|CRISPRCasFinder
GTTTCAGTCCCCTTACGGGGATTAAGTTCGTG	AAAAGAGGGGTTAATGAAGATTTAGAGGAGGTAAGTGGTGGGGT
GTTTCAGTCCCCTTGCGGGGATTAAGTTCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186247.1\|48205_48925_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|239337
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377534
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	csx3	pfam09620_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NC_019740.1\|WP_015186245.1\|43728_44349_+\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015186242.1\|39173_39761_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_019740.1\|WP_015186246.1\|44487_45108_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_019740.1\|WP_015186244.1\|40537_43498_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173803
NC_019740.1\|WP_015186255.1\|63280_63598_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186243.1\|39919_40135_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186247.1\|48205_48925_+\|glutathione-S-transferase	gnl\|CDD\|239337	cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma members include the class II insect GSTs, S-crystallins from cephalopods and 28-kDa GSTs from parasitic flatworms. Drosophila GST2 is associated with indirect flight muscle and exhibits preference for catalyzing GSH conjugation to lipid peroxidation products, indicating an anti-oxidant role. S-crystallin constitutes the major lens protein in cephalopod eyes and is responsible for lens transparency and proper refractive index. The 28-kDa GST from Schistosoma is a multifunctional enzyme, exhibiting GSH transferase, GSH peroxidase and PGD2 synthase activities, and may play an important role in host-parasite interactions. Also members are novel GSTs from the fungus Cunninghamella elegans, designated as class Gamma, and from the protozoan Blepharisma japonicum, described as a light-inducible GST.	3.76436e-24
NC_019740.1\|WP_015186241.1\|37957_38860_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	1.52124e-36
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.40334e-09
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.14897e-35
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	gnl\|CDD\|377534	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein. This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.	2.37059e-22
NC_019740.1\|WP_015186240.1\|37552_37882_+\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	4.99441e-45
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.90791e-16
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.13897e-11
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.13552e-21
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.79974e-07
NC_019740.1\|WP_015186242.1\|39173_39761_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.37012e-31
NC_019740.1\|WP_015186246.1\|44487_45108_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.2077e-17
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.34622e-27
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.37686e-07
NC_019740.1\|WP_015186244.1\|40537_43498_+\|S8-family-serine-peptidase	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.00974e-35
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.92635e-122
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0

>NC_019740.1|WP_015186247.1|48205_48925_+|glutathione-S-transferase
MNKHPILLYFGDGKGRAELVRLIFIYGGVPFEDRRISFQEYVQMRDNGELPFGQLPILEVGGTLISQSCAITRYAAKEAGLYPCDSVQAALSDMVVDAWRDLLDLLYGCYVDRVVEKGQLIMKMRDAAVRLERLDEYFAVIVPMHLRRFELLITQNQDSTFLVGQELTWADLAVFDILSTLDEAASLWTTPSTFFYIPEPAGPYRLPKELLKSYPKLEALKKTVSETPNIAAWLQAHPY
>NC_019740.1|WP_041781558.1|45960_48123_+|CRISPR-associated-helicase-Cas3'
MEIIRVEDADLQEIEGNRCRTFRGISEPLTAEFILNDIKHYQRQRVIIICNTVSQAQGLFRDLDELNQDRELTITLLHSRFLPEDRAKKEAYLKETFAQNWQQDKDNTCHVLISTQVIEAGLNITCEVMHTHLCPMNSLLQRAGRCARFRGERGEVYVYRSFQVNSVNAELAEADLEDELETSTDTELCSNLVDRRDKGDKGEKILCMNATYSEKKQSFLPYTNEICELTWAVLQEHTASERINENVGFRIEEQWINKVHTPETLLQQERRANNQMNFEQQFNAACFRGDESTANELIRFVDARSVFVWEEPIFLDEEPIDPKQLLAFSVPISTLCKVWQDVKNLGYEIDWMFKRIEHPKGRATETYSQPVCIPITSRESLVNSVRILVNPRYVYYDDQIGLLIGPDVFSNRFSSPDKPKRKLQSEYCYRMDTYVGHLVLMWKCWREAFPTTLKRNGELVETQISSVRDELLQAGGQFIQAKIFPDASENEAKALFEYLVFFAVLTHDLGKLQVKWQEVMRGWQAIAHSSFNGTNPRSHLLAHTDYDPEDKAQRDQLKTYEKKHKRPNHAVESAFLSREILKNSLFPLLRDRFGADSEQIPYICHAIMMASGRHHSAWAGGWKMGDVAKVGKILLHPEARYAIASSWRSMARFLPETLPLQPANLSREVYAVTKEFDLNRFDTAQIEYLQLYSLVVRALRLCDQRSVQLLPVKRAIEAKS
>NC_019740.1|WP_071884149.1|45150_45864_+|DEAD/DEAH-box-helicase
MTIAQFFQTLTGFPPRQFQREAIAHLLNRQDVILRAPTGSGKTETAIAPFLFAKTLQCDFPNKLIYVVPLRTLANSLRQRAETLARTWETFIEERRGEGETRRRGEFYTDIPASPCPRVPVSHQQPSRPLVVTLQTGENPEDPRFEGDIVFCTIDQMLSSFLNIPYSVGRGSANVNAGAIFASYLVFDELHLLDPDRSFATVLKVLEQVKGISPFLLMTATLTDELATQIKRLIDGS
>NC_019740.1|WP_015186246.1|44487_45108_-|Uma2-family-endonuclease
MLLTQRRADRVVLHNISWQQFENLLVDLGESRAARVAYDDGTLEIMTPLPEHEYYKEVIGDSIKEIAEVLDQDYESLGSTTWKREIKKAGVEPDNCFYFQNEPRIRGKLEYDLNQDPPPDLALEIDVTSKSLSRFSIYARLGVPEIWCYDSGELKIYQLQNEGYIEVETSSVFPTLRVQELPAIIEQYRPQGRRAIRRAVREWARE
>NC_019740.1|WP_015186245.1|43728_44349_+|hypothetical-protein
MAFSSYKSISAVVKEFQVKYTEAEFINEIEFNIPDYFREDLQTVMREGVVDNSEFAICENLIYPVLKEVWKCYRSKFLLWSHESLTYDENLSGFPEYILAKRSPLGKVVFDKPYLLLVEAKQDKFEEGWGQCLAEMIAAQRLNEDPQMTVFGIVSNGAIWQFGKLKADIFTRNITLYSIQELDKLFAAVNYIFRQCELQLDEKVAA
>NC_019740.1|WP_015186244.1|40537_43498_+|S8-family-serine-peptidase
MIDDSLVTNSQDLLNPSVTFSTSDFGSSVESSDLITPQSALNISPNVGFSQDAINLEIQAVSITDNLVPPDSLFLSSSADSLTLETVSSVTEPIALSPDLLTGQTIFNSGVFTVGNTGEVGIDFLFDGGDYQGELAIFNLEGMDKYEPGSEGFIAEAARRALSNSSLGYVVISDAVEGARFSGALPHEANFNSGQYQGVQTFSLNPGEQFGVMLVPNGTVQQVVDNPELCSNVRPLFSLGTANPNDAFHVGQIADVTGEGNTFVFEDLRVDTGSDRDYNDIVFQVRGATGQATRLDDVIASDKDWRTTNMGQALLSYIQPYIAPTDSGVIPENLPVIPTTPVNPIQFEFPQSAQPLVGIIDTGFAVNNPDIDYSRISLGQDRVEGDADPLLQSGEGNEHGTHVLGIIAATQNNNIGIDGVNDNAPIWLGRAVGSGQWAESLVEFVDTAKTSEQPNAVVNLSFDLTQVNPDGSVTTRDEFTPQEWAALEYAHQNGVIVVAAAGNEGGAMSALGQASQTFDNIITVGAAENFDRFVSVAQGVDRTGYSSYGAGLDILADGGTPDNPTLSTVGDGLGTMAGTSIAAAKVTGTLSQVWAANPELSYRQVIEILKSTATDLNVPNADTETGAGLLNPVAAVYLAQATTPLASDPLPVAPLPEFWSEPSTASERPTAALFRGKYYDWVPYTVQSGDTLSEIAQTTMGNGSAPYYSFIAEHNGIANPHLLQAGQQILIPTGISAPTEFMGKYYNWVPYTIQSGDTLSEIAQTTMGNSSAPYYNFIAQKNGIADPNVIDAGQQILVPAEVATPTNPNPQPTPTPQPLPSPGGSGPGNLLNLPVNQQRQNLGVNPQSSFYQSGGNKFAAANGTGGTYLWCTDYAFGRALEKGLIQGSSGIGGAIRGNAGDWDNNARSAGYADRVQFQPRANSFIIWEAYTADAGSVGHVGFVEAVYSDGSFLVSESNWGNPAMSFHLRHVRPGTPAYSNAKFIYL
>NC_019740.1|WP_015186243.1|39919_40135_+|hypothetical-protein
MPPDASTLTAIDELFERCKTTLLQTWKETGFGHIEIDSERVNPNKIRVILRGSTHYRYVFTDADVEEWNSR
>NC_019740.1|WP_015186242.1|39173_39761_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MLQQATVKLTERFENALVYATRLHAEQIRKATGVPYISHLLSVTALVLEDGGDEDEAIAALLHDAVEDQGGKATRAEIYRLFGERVGAIVDGCTEFDSEIKPPWYERKQHYIEQLRQGSPAVRRVALADKLHNARTIVQDYRQQGEAIWSVFSTGKEGMLWFYHSLLKMYREIAPTPMVEELARVVGELEQLGES
>NC_019740.1|WP_015186241.1|37957_38860_+|CRISPR-associated-protein-Csx3
MIATSKKPLQLTVTQVTARNGNCYQCLEIDITVPELKPATLAKLELPADLDLNQGVVLWGSAPIWLYSNLVKRCTSAPWIGCYNVPLGSFVVVASRCPQMRVGDAVELVNKSQCSAILIGGPPDSGKSVLCYALSCNLKQEASDKKIFLQRAQWDGEGNWFAQMKNRPLAEELSTRSRAKGSEQFFLYHADAVSNVREVMELVLVDFGGMPQPRDVILLHRCTHYIIISSKPEEISKWHDFCGKRGGLKPLAVIHSVREKRLEVLPNQKFLEMIAGPWERGETLSVPDELLQGVLNLARR
>NC_019740.1|WP_015186240.1|37552_37882_+|CRISPR-associated-protein-Csx3
MSAIQLELIPHQTADGLAYQHLRIHLTSPDGIIEPEDLKGLKLPEGIASSQGVVMEGRGPIWLYGYLVHECHATPWVACYDPRLEGAVVVEAHTRGVSVGSVLKLSLPK
>NC_019740.1|WP_015186248.1|49495_50335_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIKSLLVGKKFGTYADTFLMLGLALLAEYALKKTQQNPSIQLIDEGTHYRIQFKKPVNLESIALLAYTNPFPPVCGKKTDRSQLPPETPIFDVVEWGEVRKLYREYLYQNHGRRETGEDTPKPPHPSTQNSAILTSMRHDKNHNKLWLIGWELRDHYGILLTSIFQAFSQSDRSTLKTATERVAELFFAATGCKLSLQASAVKVYLPTSIQGVVSAYNLKTRTLTLNGTAEIGTTGWARYRFNDPEQAKVATILAHFAEFAGVGRKTAMGMGYVALRSH
>NC_019740.1|WP_015180559.1|50766_52074_-|transposase
MNYKQLQEFRQQVYDLINFAQDATFELTDAVLTTRNVYSLAEFSLSPFFRRKWPSIYEALQDCRPNRNKLMRLYIKQILVQERPVLAVDHTAWARVHSPTLQDRTYCHQPSAIASNKPISIGQGYSTIAWIPEHKGSWALPLRHERITSWENPISKAAWQIKQACKYLPLRPMILLDSEYGNASLLNQTAQIEADFLMRIRSNRCLYSAPPAYTGKGRPRKHGQKFKLNDSSTWWEATEMVEVEDSRFGQLRVRMWQDLHFSGSASIAMQLILVERILPEQSHSKSQPLWLVWVGQEMLPLPEIWRQYLRRFAVDHWYRFLKQRLHWTVPQLSTPCQCERWSDLMPILTWELWLARDLVAQHHLPWQKPLSNLTPGRVAESFALLLPEIGTPAVSPKPRGKSPGWQAGNKRTKKTRYPVVKKGKTPHKKRTKKAA
>NC_019740.1|WP_015186249.1|52324_52594_-|four-helix-bundle-protein
MAKESFKSHEDLAIFQLAFDTAMTIFELSKKFPVEEKYSLTDQIRRSSRSVCANLAEAWRKRRYKAAFIAKLSDWSLDYDGKECRVEKQ
>NC_019740.1|WP_015186250.1|52678_53263_+|CRISPR-associated-protein-Cas4
MTENYLPLAYLNAWEYCPRRFYLEYQLGEMEDNEHILLGRHLHRNINEEEINVEGDTLIYQQQWVWSDRLFVSGIIDAVEARDGELVPVEYKKGKMAQHLNDHFQLCAAALCLEERLGCCITYGEIFYHGNRRRQRVNFTPQLREATENAIASARLTATGKMPPPIDQAKKCQACSLIGICLPFEVKQLLRENV
>NC_019740.1|WP_015186251.1|53264_54272_+|CRISPR-associated-endonuclease-Cas1
MSVLYVTQPEAVLSKKYEAFTVALKQEDGSWQKKSVPAQTVEQVVLMGNPQVTGDALVYALELGMPIHYLSEFGKYLGSALPGYSRNGPLRLAQYALYHDTKGRLELVKAIVSAKIHNQHLVLYRYKLMGNPLKSHKKLVAEQTTLDQVRGVEGLAAKDYFGCWDALLKEPWSFPRRNRRPPTDPVNSLLSFAYGLLRVQVTAAVHLAGLDPYIGYLHEVHHGQPSMVLDLMEEFRPLVADSLVLSVLSHRELQPDDFTESLGAYRLSEDGRKTFLQAFERFLTGMQWASLQISMEKLIKPSEDSVRVYVLDAGALKRTLTYGSQQPRQDTTIIL
>NC_019740.1|WP_015186252.1|55432_57820_+|DDE-type-integrase/transposase/recombinase
MLDGEQFVRWCQQLALAEPTRKYIELLRSSPPARVVRSRAGNVSGRYPSRKMGVTIQFESHHNELAGIYEMEYDPDVLEYYDQPSGLKLSYQALCGRKVGVLHTPDFFVLRQTSAGWEEWKTLDELVRLSAKMPARYVQEIEGQWHCPPGEEVAQSLGLYYRIRCNAEIDWVFQNNLHFLEDYLQPSHLDLEENVRANITLLVELHPGITLGELLQQGYNCDEVYTLIAQNHLKVNWRGVNIAQLGSQRQIFPASQKVCQTETTKWRRASTLELAPNLVDLKPGSPVVWNGKSLSILNRGETHTALLNEEEKVIQLPNVALLELVKQGELTGVVTHSLPSAKEVNDLLAKASVDDCAQANRRYSIIAPYLTGELQTSNQVVSTRTIRRWLHSWQKAQEQYGCGYVGLLPRVSSKGNRQSKLPEATQKIVDEFIANNYLNLKQQGKFAVYSSLVRACEQQGITPCSYKTFVRNIHQKSNYEQALKRQGRRAAYKHEPFYWELEVNTPRHGQRPFEICHIDHTQLDIELVSSHTSVNLGRPWATFLTDAYSRRILAVYLCFDPPSYRSCMMVMRECVRRHGRLPHTIVVDGAKEFMSVYFERLLAAYSCTKKTRPAAKPRFGSVCERLFGTANTMLIHNLQGNTQINKNSRAVTKSVNPRNLAIWTLGSLYQNLCDWAYEFYDNKEHPALLKSPRAAFSDGLLQTGLRPHKLIPYDETFRILTLPTTSKGTAKVIPNQGVKINHIYYWHNSFRNPEIEKTQVLVRYDPNDVGIAYAYIKGQWVNCISQHYSSLAGHS
>NC_019740.1|WP_051056028.1|57945_58971_+|AAA-family-ATPase
MFGPTGVGKTTLLHQVVKVLIEQNSRAMQLDCGHIPVAYVEARAPESGSFDWKDYYKSVLIALADPFVDYKLRTGSSRIEGRGSAQRLVKSRANLSDLREDVAAIIQQRRLIVFLVDEAQRFTKMASGRRQQDQMDAIQSMASFTSTRHGLFGTYELLQLRNLSGQLSRRSLDIHFPRYQADCSQDVKDFKRVLKSFACQMPLLEVPDLEQHWEYFYERSIGCVGIVKDWLTQALRKALGESASTLSLAHLTPYAPSVSKCMQMATEAIEGEKALLQSESELSRLRQKLGLTVKEPPTATEALLNSPTRSTANKKDKKTKKRRPGERNPQRDVIGGAPSVS
>NC_019740.1|WP_015183694.1|58960_60184_+|TniQ-family-protein
MSVESWSNHQLWYSKTTTIPERSRLHPLEPIGVGTPTVESLTSYVARLAAAHRVPTGILLAQEVAQQVSRYQGNQHQGLSRWFFRVFFNDTGAWNGMGIMASEPVHVLEARTKQHQLRFLTLLRWANVLPSRGLLRTNKAWCPVCYDDWERCGKPIYEPLLWSLQVVTTCPVHQQVLWHQCPNCRRSLYPLEWNSRPGFCSRCQQWLGVSSFLSTGETSFDASPVEPPDWEWQIFVVYSVGKILEQAPFLESVPARENLAFCIDLCIQKATNGNAKAFAELMYLSASVPGEWRCGQALAQLGLLLRVCWCLSIPLVDFLTGRVVIEQPLSLKVLPITQQRRKTNRRFDALKVQMFLEAALSFEPPQSLKQVAATIGYDPGDISRFFPDLCHQISARYRLYRQAIRKS
>NC_019740.1|WP_015186253.1|60662_62873_-|ATP-dependent-RecD-like-DNA-helicase
MSTNSTPQLESLEGIVERITFHSDESGYTVARFKVPRTPDLVTIIGNFAQIEAGQTLKLSGIWRDHPKFGQQFQVTQYRETKPATLTGMEKYLGSGLIKGVGPVTAKRIVAHFGLETLDVIENQIERLLEVPGIAHKRVKMIQSAWEKQKAIKEVMVFLQGHGVSTTYAVKIFKQYGDAAIAKVTENPYQLAADIYGIGFVTADTLARNLGIEPGSEFRYRAGIVHVLGEAAEDGHCFLPFEELVEQTVKRLAIDDHQPQKNAIARLIQQMGQLNELVLESSPDQLLCYKPSFFQTEQNLAQRLRQQLTSPVTVDLPRVRRWLLRFREKTGIELSEQQQQAVEIAASERVLVLTGGPGCGKTFTTRTIVALWKAMGFSIALAAPTGRAAQRLSEMTGQPASTLHRLLEFDPKTFGFKHDESNPMEADAIVVDEASMLDLFLAYSLMKAVKPEAQLLLVGDIDQLPSVGPGNVLRDLIVSQCVPVARLTQVFRQAQASQIVTNAHQINLGKYPQLESVSLTPRSDCLWLGAPEPDYGVQGIMELLTDVIPQLGFNPTTDVQVLSPSTRGVVGTRNLNQVLQNLLNPPSASKAEVVRGGTILRVGDRLIQRVNDYQREVFNGDLGVIVAIDNEEQEIRVQFDQRQVTYDYADLLEVDLAWAVTIHKSQGSEYPVVVLPLFPQHYLMLSRNLLYTGLTRAKRLAVIVGPKKAVAMAVNQVKDQKRYTGLAWRLSGKVLR
>NC_019740.1|WP_015186255.1|63280_63598_-|hypothetical-protein
MPLQESVLGETTKRRASGWLEHYTKSKKLKSGIIATYPRVEGERDPDNPAHWYWAYRWEEKRENAKSDNGYVTRAVSLPRDKVQAVNLAIARDWPVEKILSFIRS

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Crispr_ID: NC_019740_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_7

54490-55198

Unclear

Consensus_repeat	Method
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	PILER-CR
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	CRISPRCasFinder
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CRT

9 spacers

cas1,cas4,cas6,cas3,PD-DExK

The CRISPR arrays of NC_019740_7

>merge|NC_019740|7|54490-55198|PILER-CR,CRISPRCasFinder,CRT
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACCTTCATCGCCATCACGGGAGGGGCGGGGAGGAACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACATACGAGGAATACCATCAATTCCACCTAAATTCTCAAGTGCGCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACAACAGGTAACATGTTTGAAGCTACATTACCAAAACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACAGTTATTTAAACTCCTGTCATTTATTGCACTAGTCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACAACTGTATAACCTTAAGTATTTAGCTTAAGTAACCTTGCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACGTTGAAATATACATTGTTCTAACCTCGTATTAAATCAAAACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACGAGGTGATCGAAGAAAGTTCAAATTCAGGTGAAGACACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA

>NC_019740|7|5|54490-55197|PILER-CR
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CTTCATCGCCATCACGGGAGGGGCGGGGAGGAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	ATACGAGGAATACCATCAATTCCACCTAAATTCTCAAGTGCG
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	AACAGGTAACATGTTTGAAGCTACATTACCAAAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	AGTTATTTAAACTCCTGTCATTTATTGCACTAGT
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	AACTGTATAACCTTAAGTATTTAGCTTAAGTAACCTTG
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GTTGAAATATACATTGTTCTAACCTCGTATTAAATCAAAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GAGGTGATCGAAGAAAGTTCAAATTCAGGTGAAGACA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC

>NC_019740|7|6|54490-55198|CRISPRCasFinder
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACC	TTCATCGCCATCACGGGAGGGGCGGGGAGGAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	TACGAGGAATACCATCAATTCCACCTAAATTCTCAAGTGCG
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	ACAGGTAACATGTTTGAAGCTACATTACCAAAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	GTTATTTAAACTCCTGTCATTTATTGCACTAGT
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	ACTGTATAACCTTAAGTATTTAGCTTAAGTAACCTTG
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	TTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA	TTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACG	TTGAAATATACATTGTTCTAACCTCGTATTAAATCAAAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACG	AGGTGATCGAAGAAAGTTCAAATTCAGGTGAAGACA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACA

>NC_019740|7|4|54490-55197|CRT
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CTTCATCGCCATCACGGGAGGGGCGGGGAGGAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	ATACGAGGAATACCATCAATTCCACCTAAATTCTCAAGTGCG
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	AACAGGTAACATGTTTGAAGCTACATTACCAAAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	AGTTATTTAAACTCCTGTCATTTATTGCACTAGT
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	AACTGTATAACCTTAAGTATTTAGCTTAAGTAACCTTG
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	ATTGGACGCTGTGCCAATTTCTCAGCCATTGAACAAGCGA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GTTGAAATATACATTGTTCTAACCTCGTATTAAATCAAAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GAGGTGATCGAAGAAAGTTCAAATTCAGGTGAAGACA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377534
NC_019740.1\|WP_015186247.1\|48205_48925_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|239337
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019740.1\|WP_015186256.1\|63749_64562_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186245.1\|43728_44349_+\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019740.1\|WP_015186246.1\|44487_45108_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_019740.1\|WP_015186258.1\|65117_65312_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_019740.1\|WP_015186261.1\|71196_72000_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_041781548.1\|65674_67051_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019740.1\|WP_015186255.1\|63280_63598_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NC_019740.1\|WP_015186260.1\|67580_70970_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	gnl\|CDD\|377534	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein. This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.	2.37059e-22
NC_019740.1\|WP_015186247.1\|48205_48925_+\|glutathione-S-transferase	gnl\|CDD\|239337	cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma members include the class II insect GSTs, S-crystallins from cephalopods and 28-kDa GSTs from parasitic flatworms. Drosophila GST2 is associated with indirect flight muscle and exhibits preference for catalyzing GSH conjugation to lipid peroxidation products, indicating an anti-oxidant role. S-crystallin constitutes the major lens protein in cephalopod eyes and is responsible for lens transparency and proper refractive index. The 28-kDa GST from Schistosoma is a multifunctional enzyme, exhibiting GSH transferase, GSH peroxidase and PGD2 synthase activities, and may play an important role in host-parasite interactions. Also members are novel GSTs from the fungus Cunninghamella elegans, designated as class Gamma, and from the protozoan Blepharisma japonicum, described as a light-inducible GST.	3.76436e-24
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.14897e-35
NC_019740.1\|WP_015186256.1\|63749_64562_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	5.64692e-30
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.92635e-122
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.90791e-16
NC_019740.1\|WP_071884149.1\|45150_45864_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.13552e-21
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.79974e-07
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.13897e-11
NC_019740.1\|WP_015186246.1\|44487_45108_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.2077e-17
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.34622e-27
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.37686e-07
NC_019740.1\|WP_041781548.1\|65674_67051_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.91306e-08
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.40334e-09
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0

>NC_019740.1|WP_015186251.1|53264_54272_+|CRISPR-associated-endonuclease-Cas1
MSVLYVTQPEAVLSKKYEAFTVALKQEDGSWQKKSVPAQTVEQVVLMGNPQVTGDALVYALELGMPIHYLSEFGKYLGSALPGYSRNGPLRLAQYALYHDTKGRLELVKAIVSAKIHNQHLVLYRYKLMGNPLKSHKKLVAEQTTLDQVRGVEGLAAKDYFGCWDALLKEPWSFPRRNRRPPTDPVNSLLSFAYGLLRVQVTAAVHLAGLDPYIGYLHEVHHGQPSMVLDLMEEFRPLVADSLVLSVLSHRELQPDDFTESLGAYRLSEDGRKTFLQAFERFLTGMQWASLQISMEKLIKPSEDSVRVYVLDAGALKRTLTYGSQQPRQDTTIIL
>NC_019740.1|WP_015186250.1|52678_53263_+|CRISPR-associated-protein-Cas4
MTENYLPLAYLNAWEYCPRRFYLEYQLGEMEDNEHILLGRHLHRNINEEEINVEGDTLIYQQQWVWSDRLFVSGIIDAVEARDGELVPVEYKKGKMAQHLNDHFQLCAAALCLEERLGCCITYGEIFYHGNRRRQRVNFTPQLREATENAIASARLTATGKMPPPIDQAKKCQACSLIGICLPFEVKQLLRENV
>NC_019740.1|WP_015186249.1|52324_52594_-|four-helix-bundle-protein
MAKESFKSHEDLAIFQLAFDTAMTIFELSKKFPVEEKYSLTDQIRRSSRSVCANLAEAWRKRRYKAAFIAKLSDWSLDYDGKECRVEKQ
>NC_019740.1|WP_015180559.1|50766_52074_-|transposase
MNYKQLQEFRQQVYDLINFAQDATFELTDAVLTTRNVYSLAEFSLSPFFRRKWPSIYEALQDCRPNRNKLMRLYIKQILVQERPVLAVDHTAWARVHSPTLQDRTYCHQPSAIASNKPISIGQGYSTIAWIPEHKGSWALPLRHERITSWENPISKAAWQIKQACKYLPLRPMILLDSEYGNASLLNQTAQIEADFLMRIRSNRCLYSAPPAYTGKGRPRKHGQKFKLNDSSTWWEATEMVEVEDSRFGQLRVRMWQDLHFSGSASIAMQLILVERILPEQSHSKSQPLWLVWVGQEMLPLPEIWRQYLRRFAVDHWYRFLKQRLHWTVPQLSTPCQCERWSDLMPILTWELWLARDLVAQHHLPWQKPLSNLTPGRVAESFALLLPEIGTPAVSPKPRGKSPGWQAGNKRTKKTRYPVVKKGKTPHKKRTKKAA
>NC_019740.1|WP_015186248.1|49495_50335_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIKSLLVGKKFGTYADTFLMLGLALLAEYALKKTQQNPSIQLIDEGTHYRIQFKKPVNLESIALLAYTNPFPPVCGKKTDRSQLPPETPIFDVVEWGEVRKLYREYLYQNHGRRETGEDTPKPPHPSTQNSAILTSMRHDKNHNKLWLIGWELRDHYGILLTSIFQAFSQSDRSTLKTATERVAELFFAATGCKLSLQASAVKVYLPTSIQGVVSAYNLKTRTLTLNGTAEIGTTGWARYRFNDPEQAKVATILAHFAEFAGVGRKTAMGMGYVALRSH
>NC_019740.1|WP_015186247.1|48205_48925_+|glutathione-S-transferase
MNKHPILLYFGDGKGRAELVRLIFIYGGVPFEDRRISFQEYVQMRDNGELPFGQLPILEVGGTLISQSCAITRYAAKEAGLYPCDSVQAALSDMVVDAWRDLLDLLYGCYVDRVVEKGQLIMKMRDAAVRLERLDEYFAVIVPMHLRRFELLITQNQDSTFLVGQELTWADLAVFDILSTLDEAASLWTTPSTFFYIPEPAGPYRLPKELLKSYPKLEALKKTVSETPNIAAWLQAHPY
>NC_019740.1|WP_041781558.1|45960_48123_+|CRISPR-associated-helicase-Cas3'
MEIIRVEDADLQEIEGNRCRTFRGISEPLTAEFILNDIKHYQRQRVIIICNTVSQAQGLFRDLDELNQDRELTITLLHSRFLPEDRAKKEAYLKETFAQNWQQDKDNTCHVLISTQVIEAGLNITCEVMHTHLCPMNSLLQRAGRCARFRGERGEVYVYRSFQVNSVNAELAEADLEDELETSTDTELCSNLVDRRDKGDKGEKILCMNATYSEKKQSFLPYTNEICELTWAVLQEHTASERINENVGFRIEEQWINKVHTPETLLQQERRANNQMNFEQQFNAACFRGDESTANELIRFVDARSVFVWEEPIFLDEEPIDPKQLLAFSVPISTLCKVWQDVKNLGYEIDWMFKRIEHPKGRATETYSQPVCIPITSRESLVNSVRILVNPRYVYYDDQIGLLIGPDVFSNRFSSPDKPKRKLQSEYCYRMDTYVGHLVLMWKCWREAFPTTLKRNGELVETQISSVRDELLQAGGQFIQAKIFPDASENEAKALFEYLVFFAVLTHDLGKLQVKWQEVMRGWQAIAHSSFNGTNPRSHLLAHTDYDPEDKAQRDQLKTYEKKHKRPNHAVESAFLSREILKNSLFPLLRDRFGADSEQIPYICHAIMMASGRHHSAWAGGWKMGDVAKVGKILLHPEARYAIASSWRSMARFLPETLPLQPANLSREVYAVTKEFDLNRFDTAQIEYLQLYSLVVRALRLCDQRSVQLLPVKRAIEAKS
>NC_019740.1|WP_071884149.1|45150_45864_+|DEAD/DEAH-box-helicase
MTIAQFFQTLTGFPPRQFQREAIAHLLNRQDVILRAPTGSGKTETAIAPFLFAKTLQCDFPNKLIYVVPLRTLANSLRQRAETLARTWETFIEERRGEGETRRRGEFYTDIPASPCPRVPVSHQQPSRPLVVTLQTGENPEDPRFEGDIVFCTIDQMLSSFLNIPYSVGRGSANVNAGAIFASYLVFDELHLLDPDRSFATVLKVLEQVKGISPFLLMTATLTDELATQIKRLIDGS
>NC_019740.1|WP_015186246.1|44487_45108_-|Uma2-family-endonuclease
MLLTQRRADRVVLHNISWQQFENLLVDLGESRAARVAYDDGTLEIMTPLPEHEYYKEVIGDSIKEIAEVLDQDYESLGSTTWKREIKKAGVEPDNCFYFQNEPRIRGKLEYDLNQDPPPDLALEIDVTSKSLSRFSIYARLGVPEIWCYDSGELKIYQLQNEGYIEVETSSVFPTLRVQELPAIIEQYRPQGRRAIRRAVREWARE
>NC_019740.1|WP_015186245.1|43728_44349_+|hypothetical-protein
MAFSSYKSISAVVKEFQVKYTEAEFINEIEFNIPDYFREDLQTVMREGVVDNSEFAICENLIYPVLKEVWKCYRSKFLLWSHESLTYDENLSGFPEYILAKRSPLGKVVFDKPYLLLVEAKQDKFEEGWGQCLAEMIAAQRLNEDPQMTVFGIVSNGAIWQFGKLKADIFTRNITLYSIQELDKLFAAVNYIFRQCELQLDEKVAA
>NC_019740.1|WP_015186252.1|55432_57820_+|DDE-type-integrase/transposase/recombinase
MLDGEQFVRWCQQLALAEPTRKYIELLRSSPPARVVRSRAGNVSGRYPSRKMGVTIQFESHHNELAGIYEMEYDPDVLEYYDQPSGLKLSYQALCGRKVGVLHTPDFFVLRQTSAGWEEWKTLDELVRLSAKMPARYVQEIEGQWHCPPGEEVAQSLGLYYRIRCNAEIDWVFQNNLHFLEDYLQPSHLDLEENVRANITLLVELHPGITLGELLQQGYNCDEVYTLIAQNHLKVNWRGVNIAQLGSQRQIFPASQKVCQTETTKWRRASTLELAPNLVDLKPGSPVVWNGKSLSILNRGETHTALLNEEEKVIQLPNVALLELVKQGELTGVVTHSLPSAKEVNDLLAKASVDDCAQANRRYSIIAPYLTGELQTSNQVVSTRTIRRWLHSWQKAQEQYGCGYVGLLPRVSSKGNRQSKLPEATQKIVDEFIANNYLNLKQQGKFAVYSSLVRACEQQGITPCSYKTFVRNIHQKSNYEQALKRQGRRAAYKHEPFYWELEVNTPRHGQRPFEICHIDHTQLDIELVSSHTSVNLGRPWATFLTDAYSRRILAVYLCFDPPSYRSCMMVMRECVRRHGRLPHTIVVDGAKEFMSVYFERLLAAYSCTKKTRPAAKPRFGSVCERLFGTANTMLIHNLQGNTQINKNSRAVTKSVNPRNLAIWTLGSLYQNLCDWAYEFYDNKEHPALLKSPRAAFSDGLLQTGLRPHKLIPYDETFRILTLPTTSKGTAKVIPNQGVKINHIYYWHNSFRNPEIEKTQVLVRYDPNDVGIAYAYIKGQWVNCISQHYSSLAGHS
>NC_019740.1|WP_051056028.1|57945_58971_+|AAA-family-ATPase
MFGPTGVGKTTLLHQVVKVLIEQNSRAMQLDCGHIPVAYVEARAPESGSFDWKDYYKSVLIALADPFVDYKLRTGSSRIEGRGSAQRLVKSRANLSDLREDVAAIIQQRRLIVFLVDEAQRFTKMASGRRQQDQMDAIQSMASFTSTRHGLFGTYELLQLRNLSGQLSRRSLDIHFPRYQADCSQDVKDFKRVLKSFACQMPLLEVPDLEQHWEYFYERSIGCVGIVKDWLTQALRKALGESASTLSLAHLTPYAPSVSKCMQMATEAIEGEKALLQSESELSRLRQKLGLTVKEPPTATEALLNSPTRSTANKKDKKTKKRRPGERNPQRDVIGGAPSVS
>NC_019740.1|WP_015183694.1|58960_60184_+|TniQ-family-protein
MSVESWSNHQLWYSKTTTIPERSRLHPLEPIGVGTPTVESLTSYVARLAAAHRVPTGILLAQEVAQQVSRYQGNQHQGLSRWFFRVFFNDTGAWNGMGIMASEPVHVLEARTKQHQLRFLTLLRWANVLPSRGLLRTNKAWCPVCYDDWERCGKPIYEPLLWSLQVVTTCPVHQQVLWHQCPNCRRSLYPLEWNSRPGFCSRCQQWLGVSSFLSTGETSFDASPVEPPDWEWQIFVVYSVGKILEQAPFLESVPARENLAFCIDLCIQKATNGNAKAFAELMYLSASVPGEWRCGQALAQLGLLLRVCWCLSIPLVDFLTGRVVIEQPLSLKVLPITQQRRKTNRRFDALKVQMFLEAALSFEPPQSLKQVAATIGYDPGDISRFFPDLCHQISARYRLYRQAIRKS
>NC_019740.1|WP_015186253.1|60662_62873_-|ATP-dependent-RecD-like-DNA-helicase
MSTNSTPQLESLEGIVERITFHSDESGYTVARFKVPRTPDLVTIIGNFAQIEAGQTLKLSGIWRDHPKFGQQFQVTQYRETKPATLTGMEKYLGSGLIKGVGPVTAKRIVAHFGLETLDVIENQIERLLEVPGIAHKRVKMIQSAWEKQKAIKEVMVFLQGHGVSTTYAVKIFKQYGDAAIAKVTENPYQLAADIYGIGFVTADTLARNLGIEPGSEFRYRAGIVHVLGEAAEDGHCFLPFEELVEQTVKRLAIDDHQPQKNAIARLIQQMGQLNELVLESSPDQLLCYKPSFFQTEQNLAQRLRQQLTSPVTVDLPRVRRWLLRFREKTGIELSEQQQQAVEIAASERVLVLTGGPGCGKTFTTRTIVALWKAMGFSIALAAPTGRAAQRLSEMTGQPASTLHRLLEFDPKTFGFKHDESNPMEADAIVVDEASMLDLFLAYSLMKAVKPEAQLLLVGDIDQLPSVGPGNVLRDLIVSQCVPVARLTQVFRQAQASQIVTNAHQINLGKYPQLESVSLTPRSDCLWLGAPEPDYGVQGIMELLTDVIPQLGFNPTTDVQVLSPSTRGVVGTRNLNQVLQNLLNPPSASKAEVVRGGTILRVGDRLIQRVNDYQREVFNGDLGVIVAIDNEEQEIRVQFDQRQVTYDYADLLEVDLAWAVTIHKSQGSEYPVVVLPLFPQHYLMLSRNLLYTGLTRAKRLAVIVGPKKAVAMAVNQVKDQKRYTGLAWRLSGKVLR
>NC_019740.1|WP_015186255.1|63280_63598_-|hypothetical-protein
MPLQESVLGETTKRRASGWLEHYTKSKKLKSGIIATYPRVEGERDPDNPAHWYWAYRWEEKRENAKSDNGYVTRAVSLPRDKVQAVNLAIARDWPVEKILSFIRS
>NC_019740.1|WP_015186256.1|63749_64562_-|DNA-(cytosine-5-)-methyltransferase
MVRELVWTDLCSGIGAGFPYAGCKYAELNLIATCDTDEYAQDILLKRYPRAICIKDVRLWVSVSQSLPAVELVTASPPCQPFSVQGKRLGIEDKRDCFPALIGTIAHSTPRFFCIENVPGLLSCPIRPGAGAGTYFTFILSAMAVIGYDVEWLCVESGHFAAPWRRKRLLMVGFPRGIIPHQSRPWIEQVREQLSCERDSWEGRGLQPGLAGVEERTVEGVLVPVGVKNGDRVIRRRREALGNALDPRVAEIALRRVLYLNRLTQSPRTK
>NC_019740.1|WP_015186258.1|65117_65312_+|hypothetical-protein
MLRSSMPETTAVATFMRGWDMEKLVQASGIPIERLEEIRNGGHITASEPTGLIRTGMNPEDLKP
>NC_019740.1|WP_041781548.1|65674_67051_+|helix-turn-helix-transcriptional-regulator
MINSTAHRNLRGLIEVEEFSDPPRTEPRLYQSKPITPIATPPPMVSSLQAQLRPDQWQQDSSGISCFQHQAKGNPNNIIKHYIASPGNITVLPWDEALQIIDKFGLTTAKLHLIFAAHTMRQDKPWSSQFTLKGSDLIEEMGWDKNHNSPAYEKRKDIAMVAFVLDCLLIEATWVEGKHKKGGILASVETSRMWNVQVQLTGQRNLEGKVEQPDEVYITIQPGLWTRSFLNKAGCQAKDALYQFGYLAQEVLKIDPYHDELALRLAILLTMESRFRTSGTYEVKNLLEALVPQTVIDEARANRDKAYKLANRWNHALAALMELSQAFQVEFDPKTYPEELRPGSKARKPRGYFEQLLAAKITIHPPAPIPALLATKTKPEPTQPKLKSARRTTSSPTSQRAKLTGAQIRNARNVKGWSQATLAGWLGVSQRYVSMIERGDRIPTPEQESNFRQLLNIQ
>NC_019740.1|WP_015186260.1|67580_70970_+|hypothetical-protein
MTFRGGFRSLKRNCPICAGVRSDCRENRDNGLIHCRAPIATLPSGWRFVGEDKCGFGMYTQSTDNTDTQAWQERRQRQEQQRQRELEELARGALPSAERDTAIRKLHSYLGLGNRHRQNLRDRGLTDAAIDAGGFFTIYPDQELPYGIPANLPGVTRGKLATKVSGFACPAFDVHGRLIGWQLRVDDATDNKYRWAKGWKSSHLPNGELPITICRPVEGIKRPGVALAEGLLKPYVAAQKLGQIVIGAAGANFAGSPQQLRESLEVLKPEIITLYPDAGAVLNHHVMSQYQRTVKLIAGWGYSVQVAWWGQTIKLESPDIDELDDLGAIAYLKPAEFWQLAPSPRAARNFREMVTGWLPRIKQRLEASRKRLSAWGFGKTRETKLTQKSPKIEATEYAAGFRLDAWKKAAQEYKFIWDDSGTGSGKSFDAGRVTPELLECDSEALLRSADRVFYVTSDPRNPTTDTLADWGLLNGRHQGLVTDSHGKIRRSKPGESYTIQPNCYRVDTISSLREAGIEGADSSELICQTCPFYEACKGGHVFGYLNARMNALKLPRVRSHPASLPVTAGENAFDYSGSVLIWEEWNTILKNTRQITVTERDLEKLMLQLATTAPTHFFLLSPLLTALRQLIAGVIKQPNRFGWNHHALLRQLPELPADIDLEAIASVLEPDLEILDPTAEYGLSAAELPAGWRKKFTESDEATAEKIRTTLLKQWLMPFLRVLRGEKGYFTLSYGVLTITTPDNRLVDIAHAAKCNIFLDATGHREELALLLGIKPEEIYHIKQQQLPGAQVKRVQVAGLGRLGQHRGKEQQRRSQATVSELLKRHPNAGVIRFKRLALEGDYRWFIESRGVNDAQTLDTLILDGIPCENLEYLAAEFACIYGRVPVEGTSHVKTPVQLTNPLPEGIEAYFESSVSADPDFAEFVRRRILANIHQAEGRLRATRRQGEQLTVYILGDFALDVPVELVRATDITLEAASKTERLELAIRSAVEQLKATGQKVTQQAIANLAGYTRGHISRFQKLIVLLISDSKSEAIDNAPARSATIPKSPPDPPPDEIEWLSSEYLPLIADSPYVELLSLVDAYGKGGFNLIWNGATAEVQVKILSQAILSLLSGDELRQLARSVGVKL
>NC_019740.1|WP_015186261.1|71196_72000_-|hypothetical-protein
MDKTLHIHQVSPAPDALASAMESINTLSVWLVDAGLDNSAITQWKFNALAKKFPELADIIEDAKKLIGSIAPAPEIGMTVSEMAERLTSFLERKIKPAQVNQALVELGFQVRPDNGKRVWQLTESGKEYGFSRLATSKTNDWSGPQVTWREAVIPVLIDYFENAFLLEEGKSELSDSTSTPAPELEGEPESSSWMLGDRIKALKKKVTASQRLHVEMEAAEAYKERHSKPPEQEEVKGKYHDVYPAADLDLLDEAIERVLKRYAKNQ

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Crispr_ID: NC_019740_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_8

60346-60607

Unclear

Consensus_repeat	Method
GAACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	PILER-CR
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CRISPRCasFinder
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CRT

3 spacers

cas1,cas4,cas6,cas3

The CRISPR arrays of NC_019740_8

>merge|NC_019740|8|60346-60607|PILER-CR,CRISPRCasFinder,CRT
GAGCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACTAGCCTTAGAATGGGGGAACCTCTTCAGATTTCTCCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACCGGTTGACATCCTCCCACCGCTAATTCGGAGTACCGAACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAACGGACGGCTGATCACAATTTGGCTAATGCGACCTTTGAACTTTCCGCGAACTTAATCCCCGCAATGAAACTGAAGC

>NC_019740|8|6|60346-60607|PILER-CR
GAGCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	TAGCCTTAGAATGGGGGAACCTCTTCAGATTT
CTCCTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CGGTTGACATCCTCCCACCGCTAATTCGGAGTACC
GAACTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GGACGGCTGATCACAATTTGGCTAATGCGACCTTT
GAACTTTCCGCGAACTTAATCCCCGCAATGAAACTGAAGC

>NC_019740|8|7|60349-60607|CRISPRCasFinder
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	TAGCCTTAGAATGGGGGAACCTCTTCAGATTTCTC
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CGGTTGACATCCTCCCACCGCTAATTCGGAGTACCGAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GGACGGCTGATCACAATTTGGCTAATGCGACCTTTGAA
CTTTCCGCGAACTTAATCCCCGCAATGAAACTGAAGC

>NC_019740|8|5|60349-60607|CRT
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	TAGCCTTAGAATGGGGGAACCTCTTCAGATTTCTC
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	CGGTTGACATCCTCCCACCGCTAATTCGGAGTACCGAA
CTTTCCGCGAACTTAATCCCCGCAAGGGGACTGAAAC	GGACGGCTGATCACAATTTGGCTAATGCGACCTTTGAA
CTTTCCGCGAACTTAATCCCCGCAATGAAACTGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377534
NC_019740.1\|WP_015186247.1\|48205_48925_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|239337
NC_019740.1\|WP_041781552.1\|72262_72661_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019740.1\|WP_015186256.1\|63749_64562_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|273211
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NC_019740.1\|WP_015186265.1\|73771_74026_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019740.1\|WP_041781548.1\|65674_67051_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019740.1\|WP_015186263.1\|73080_73389_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_019740.1\|WP_015186258.1\|65117_65312_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_019740.1\|WP_015186261.1\|71196_72000_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186255.1\|63280_63598_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186260.1\|67580_70970_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	gnl\|CDD\|377534	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein. This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.	2.37059e-22
NC_019740.1\|WP_015186247.1\|48205_48925_+\|glutathione-S-transferase	gnl\|CDD\|239337	cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma members include the class II insect GSTs, S-crystallins from cephalopods and 28-kDa GSTs from parasitic flatworms. Drosophila GST2 is associated with indirect flight muscle and exhibits preference for catalyzing GSH conjugation to lipid peroxidation products, indicating an anti-oxidant role. S-crystallin constitutes the major lens protein in cephalopod eyes and is responsible for lens transparency and proper refractive index. The 28-kDa GST from Schistosoma is a multifunctional enzyme, exhibiting GSH transferase, GSH peroxidase and PGD2 synthase activities, and may play an important role in host-parasite interactions. Also members are novel GSTs from the fungus Cunninghamella elegans, designated as class Gamma, and from the protozoan Blepharisma japonicum, described as a light-inducible GST.	3.76436e-24
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.14897e-35
NC_019740.1\|WP_015186256.1\|63749_64562_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	5.64692e-30
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.40334e-09
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.90791e-16
NC_019740.1\|WP_041781548.1\|65674_67051_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.91306e-08
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.79974e-07
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.13897e-11
NC_019740.1\|WP_041781558.1\|45960_48123_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.34622e-27
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.37686e-07
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.92635e-122
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0

>NC_019740.1|WP_015183694.1|58960_60184_+|TniQ-family-protein
MSVESWSNHQLWYSKTTTIPERSRLHPLEPIGVGTPTVESLTSYVARLAAAHRVPTGILLAQEVAQQVSRYQGNQHQGLSRWFFRVFFNDTGAWNGMGIMASEPVHVLEARTKQHQLRFLTLLRWANVLPSRGLLRTNKAWCPVCYDDWERCGKPIYEPLLWSLQVVTTCPVHQQVLWHQCPNCRRSLYPLEWNSRPGFCSRCQQWLGVSSFLSTGETSFDASPVEPPDWEWQIFVVYSVGKILEQAPFLESVPARENLAFCIDLCIQKATNGNAKAFAELMYLSASVPGEWRCGQALAQLGLLLRVCWCLSIPLVDFLTGRVVIEQPLSLKVLPITQQRRKTNRRFDALKVQMFLEAALSFEPPQSLKQVAATIGYDPGDISRFFPDLCHQISARYRLYRQAIRKS
>NC_019740.1|WP_051056028.1|57945_58971_+|AAA-family-ATPase
MFGPTGVGKTTLLHQVVKVLIEQNSRAMQLDCGHIPVAYVEARAPESGSFDWKDYYKSVLIALADPFVDYKLRTGSSRIEGRGSAQRLVKSRANLSDLREDVAAIIQQRRLIVFLVDEAQRFTKMASGRRQQDQMDAIQSMASFTSTRHGLFGTYELLQLRNLSGQLSRRSLDIHFPRYQADCSQDVKDFKRVLKSFACQMPLLEVPDLEQHWEYFYERSIGCVGIVKDWLTQALRKALGESASTLSLAHLTPYAPSVSKCMQMATEAIEGEKALLQSESELSRLRQKLGLTVKEPPTATEALLNSPTRSTANKKDKKTKKRRPGERNPQRDVIGGAPSVS
>NC_019740.1|WP_015186252.1|55432_57820_+|DDE-type-integrase/transposase/recombinase
MLDGEQFVRWCQQLALAEPTRKYIELLRSSPPARVVRSRAGNVSGRYPSRKMGVTIQFESHHNELAGIYEMEYDPDVLEYYDQPSGLKLSYQALCGRKVGVLHTPDFFVLRQTSAGWEEWKTLDELVRLSAKMPARYVQEIEGQWHCPPGEEVAQSLGLYYRIRCNAEIDWVFQNNLHFLEDYLQPSHLDLEENVRANITLLVELHPGITLGELLQQGYNCDEVYTLIAQNHLKVNWRGVNIAQLGSQRQIFPASQKVCQTETTKWRRASTLELAPNLVDLKPGSPVVWNGKSLSILNRGETHTALLNEEEKVIQLPNVALLELVKQGELTGVVTHSLPSAKEVNDLLAKASVDDCAQANRRYSIIAPYLTGELQTSNQVVSTRTIRRWLHSWQKAQEQYGCGYVGLLPRVSSKGNRQSKLPEATQKIVDEFIANNYLNLKQQGKFAVYSSLVRACEQQGITPCSYKTFVRNIHQKSNYEQALKRQGRRAAYKHEPFYWELEVNTPRHGQRPFEICHIDHTQLDIELVSSHTSVNLGRPWATFLTDAYSRRILAVYLCFDPPSYRSCMMVMRECVRRHGRLPHTIVVDGAKEFMSVYFERLLAAYSCTKKTRPAAKPRFGSVCERLFGTANTMLIHNLQGNTQINKNSRAVTKSVNPRNLAIWTLGSLYQNLCDWAYEFYDNKEHPALLKSPRAAFSDGLLQTGLRPHKLIPYDETFRILTLPTTSKGTAKVIPNQGVKINHIYYWHNSFRNPEIEKTQVLVRYDPNDVGIAYAYIKGQWVNCISQHYSSLAGHS
>NC_019740.1|WP_015186251.1|53264_54272_+|CRISPR-associated-endonuclease-Cas1
MSVLYVTQPEAVLSKKYEAFTVALKQEDGSWQKKSVPAQTVEQVVLMGNPQVTGDALVYALELGMPIHYLSEFGKYLGSALPGYSRNGPLRLAQYALYHDTKGRLELVKAIVSAKIHNQHLVLYRYKLMGNPLKSHKKLVAEQTTLDQVRGVEGLAAKDYFGCWDALLKEPWSFPRRNRRPPTDPVNSLLSFAYGLLRVQVTAAVHLAGLDPYIGYLHEVHHGQPSMVLDLMEEFRPLVADSLVLSVLSHRELQPDDFTESLGAYRLSEDGRKTFLQAFERFLTGMQWASLQISMEKLIKPSEDSVRVYVLDAGALKRTLTYGSQQPRQDTTIIL
>NC_019740.1|WP_015186250.1|52678_53263_+|CRISPR-associated-protein-Cas4
MTENYLPLAYLNAWEYCPRRFYLEYQLGEMEDNEHILLGRHLHRNINEEEINVEGDTLIYQQQWVWSDRLFVSGIIDAVEARDGELVPVEYKKGKMAQHLNDHFQLCAAALCLEERLGCCITYGEIFYHGNRRRQRVNFTPQLREATENAIASARLTATGKMPPPIDQAKKCQACSLIGICLPFEVKQLLRENV
>NC_019740.1|WP_015186249.1|52324_52594_-|four-helix-bundle-protein
MAKESFKSHEDLAIFQLAFDTAMTIFELSKKFPVEEKYSLTDQIRRSSRSVCANLAEAWRKRRYKAAFIAKLSDWSLDYDGKECRVEKQ
>NC_019740.1|WP_015180559.1|50766_52074_-|transposase
MNYKQLQEFRQQVYDLINFAQDATFELTDAVLTTRNVYSLAEFSLSPFFRRKWPSIYEALQDCRPNRNKLMRLYIKQILVQERPVLAVDHTAWARVHSPTLQDRTYCHQPSAIASNKPISIGQGYSTIAWIPEHKGSWALPLRHERITSWENPISKAAWQIKQACKYLPLRPMILLDSEYGNASLLNQTAQIEADFLMRIRSNRCLYSAPPAYTGKGRPRKHGQKFKLNDSSTWWEATEMVEVEDSRFGQLRVRMWQDLHFSGSASIAMQLILVERILPEQSHSKSQPLWLVWVGQEMLPLPEIWRQYLRRFAVDHWYRFLKQRLHWTVPQLSTPCQCERWSDLMPILTWELWLARDLVAQHHLPWQKPLSNLTPGRVAESFALLLPEIGTPAVSPKPRGKSPGWQAGNKRTKKTRYPVVKKGKTPHKKRTKKAA
>NC_019740.1|WP_015186248.1|49495_50335_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIKSLLVGKKFGTYADTFLMLGLALLAEYALKKTQQNPSIQLIDEGTHYRIQFKKPVNLESIALLAYTNPFPPVCGKKTDRSQLPPETPIFDVVEWGEVRKLYREYLYQNHGRRETGEDTPKPPHPSTQNSAILTSMRHDKNHNKLWLIGWELRDHYGILLTSIFQAFSQSDRSTLKTATERVAELFFAATGCKLSLQASAVKVYLPTSIQGVVSAYNLKTRTLTLNGTAEIGTTGWARYRFNDPEQAKVATILAHFAEFAGVGRKTAMGMGYVALRSH
>NC_019740.1|WP_015186247.1|48205_48925_+|glutathione-S-transferase
MNKHPILLYFGDGKGRAELVRLIFIYGGVPFEDRRISFQEYVQMRDNGELPFGQLPILEVGGTLISQSCAITRYAAKEAGLYPCDSVQAALSDMVVDAWRDLLDLLYGCYVDRVVEKGQLIMKMRDAAVRLERLDEYFAVIVPMHLRRFELLITQNQDSTFLVGQELTWADLAVFDILSTLDEAASLWTTPSTFFYIPEPAGPYRLPKELLKSYPKLEALKKTVSETPNIAAWLQAHPY
>NC_019740.1|WP_041781558.1|45960_48123_+|CRISPR-associated-helicase-Cas3'
MEIIRVEDADLQEIEGNRCRTFRGISEPLTAEFILNDIKHYQRQRVIIICNTVSQAQGLFRDLDELNQDRELTITLLHSRFLPEDRAKKEAYLKETFAQNWQQDKDNTCHVLISTQVIEAGLNITCEVMHTHLCPMNSLLQRAGRCARFRGERGEVYVYRSFQVNSVNAELAEADLEDELETSTDTELCSNLVDRRDKGDKGEKILCMNATYSEKKQSFLPYTNEICELTWAVLQEHTASERINENVGFRIEEQWINKVHTPETLLQQERRANNQMNFEQQFNAACFRGDESTANELIRFVDARSVFVWEEPIFLDEEPIDPKQLLAFSVPISTLCKVWQDVKNLGYEIDWMFKRIEHPKGRATETYSQPVCIPITSRESLVNSVRILVNPRYVYYDDQIGLLIGPDVFSNRFSSPDKPKRKLQSEYCYRMDTYVGHLVLMWKCWREAFPTTLKRNGELVETQISSVRDELLQAGGQFIQAKIFPDASENEAKALFEYLVFFAVLTHDLGKLQVKWQEVMRGWQAIAHSSFNGTNPRSHLLAHTDYDPEDKAQRDQLKTYEKKHKRPNHAVESAFLSREILKNSLFPLLRDRFGADSEQIPYICHAIMMASGRHHSAWAGGWKMGDVAKVGKILLHPEARYAIASSWRSMARFLPETLPLQPANLSREVYAVTKEFDLNRFDTAQIEYLQLYSLVVRALRLCDQRSVQLLPVKRAIEAKS
>NC_019740.1|WP_015186253.1|60662_62873_-|ATP-dependent-RecD-like-DNA-helicase
MSTNSTPQLESLEGIVERITFHSDESGYTVARFKVPRTPDLVTIIGNFAQIEAGQTLKLSGIWRDHPKFGQQFQVTQYRETKPATLTGMEKYLGSGLIKGVGPVTAKRIVAHFGLETLDVIENQIERLLEVPGIAHKRVKMIQSAWEKQKAIKEVMVFLQGHGVSTTYAVKIFKQYGDAAIAKVTENPYQLAADIYGIGFVTADTLARNLGIEPGSEFRYRAGIVHVLGEAAEDGHCFLPFEELVEQTVKRLAIDDHQPQKNAIARLIQQMGQLNELVLESSPDQLLCYKPSFFQTEQNLAQRLRQQLTSPVTVDLPRVRRWLLRFREKTGIELSEQQQQAVEIAASERVLVLTGGPGCGKTFTTRTIVALWKAMGFSIALAAPTGRAAQRLSEMTGQPASTLHRLLEFDPKTFGFKHDESNPMEADAIVVDEASMLDLFLAYSLMKAVKPEAQLLLVGDIDQLPSVGPGNVLRDLIVSQCVPVARLTQVFRQAQASQIVTNAHQINLGKYPQLESVSLTPRSDCLWLGAPEPDYGVQGIMELLTDVIPQLGFNPTTDVQVLSPSTRGVVGTRNLNQVLQNLLNPPSASKAEVVRGGTILRVGDRLIQRVNDYQREVFNGDLGVIVAIDNEEQEIRVQFDQRQVTYDYADLLEVDLAWAVTIHKSQGSEYPVVVLPLFPQHYLMLSRNLLYTGLTRAKRLAVIVGPKKAVAMAVNQVKDQKRYTGLAWRLSGKVLR
>NC_019740.1|WP_015186255.1|63280_63598_-|hypothetical-protein
MPLQESVLGETTKRRASGWLEHYTKSKKLKSGIIATYPRVEGERDPDNPAHWYWAYRWEEKRENAKSDNGYVTRAVSLPRDKVQAVNLAIARDWPVEKILSFIRS
>NC_019740.1|WP_015186256.1|63749_64562_-|DNA-(cytosine-5-)-methyltransferase
MVRELVWTDLCSGIGAGFPYAGCKYAELNLIATCDTDEYAQDILLKRYPRAICIKDVRLWVSVSQSLPAVELVTASPPCQPFSVQGKRLGIEDKRDCFPALIGTIAHSTPRFFCIENVPGLLSCPIRPGAGAGTYFTFILSAMAVIGYDVEWLCVESGHFAAPWRRKRLLMVGFPRGIIPHQSRPWIEQVREQLSCERDSWEGRGLQPGLAGVEERTVEGVLVPVGVKNGDRVIRRRREALGNALDPRVAEIALRRVLYLNRLTQSPRTK
>NC_019740.1|WP_015186258.1|65117_65312_+|hypothetical-protein
MLRSSMPETTAVATFMRGWDMEKLVQASGIPIERLEEIRNGGHITASEPTGLIRTGMNPEDLKP
>NC_019740.1|WP_041781548.1|65674_67051_+|helix-turn-helix-transcriptional-regulator
MINSTAHRNLRGLIEVEEFSDPPRTEPRLYQSKPITPIATPPPMVSSLQAQLRPDQWQQDSSGISCFQHQAKGNPNNIIKHYIASPGNITVLPWDEALQIIDKFGLTTAKLHLIFAAHTMRQDKPWSSQFTLKGSDLIEEMGWDKNHNSPAYEKRKDIAMVAFVLDCLLIEATWVEGKHKKGGILASVETSRMWNVQVQLTGQRNLEGKVEQPDEVYITIQPGLWTRSFLNKAGCQAKDALYQFGYLAQEVLKIDPYHDELALRLAILLTMESRFRTSGTYEVKNLLEALVPQTVIDEARANRDKAYKLANRWNHALAALMELSQAFQVEFDPKTYPEELRPGSKARKPRGYFEQLLAAKITIHPPAPIPALLATKTKPEPTQPKLKSARRTTSSPTSQRAKLTGAQIRNARNVKGWSQATLAGWLGVSQRYVSMIERGDRIPTPEQESNFRQLLNIQ
>NC_019740.1|WP_015186260.1|67580_70970_+|hypothetical-protein
MTFRGGFRSLKRNCPICAGVRSDCRENRDNGLIHCRAPIATLPSGWRFVGEDKCGFGMYTQSTDNTDTQAWQERRQRQEQQRQRELEELARGALPSAERDTAIRKLHSYLGLGNRHRQNLRDRGLTDAAIDAGGFFTIYPDQELPYGIPANLPGVTRGKLATKVSGFACPAFDVHGRLIGWQLRVDDATDNKYRWAKGWKSSHLPNGELPITICRPVEGIKRPGVALAEGLLKPYVAAQKLGQIVIGAAGANFAGSPQQLRESLEVLKPEIITLYPDAGAVLNHHVMSQYQRTVKLIAGWGYSVQVAWWGQTIKLESPDIDELDDLGAIAYLKPAEFWQLAPSPRAARNFREMVTGWLPRIKQRLEASRKRLSAWGFGKTRETKLTQKSPKIEATEYAAGFRLDAWKKAAQEYKFIWDDSGTGSGKSFDAGRVTPELLECDSEALLRSADRVFYVTSDPRNPTTDTLADWGLLNGRHQGLVTDSHGKIRRSKPGESYTIQPNCYRVDTISSLREAGIEGADSSELICQTCPFYEACKGGHVFGYLNARMNALKLPRVRSHPASLPVTAGENAFDYSGSVLIWEEWNTILKNTRQITVTERDLEKLMLQLATTAPTHFFLLSPLLTALRQLIAGVIKQPNRFGWNHHALLRQLPELPADIDLEAIASVLEPDLEILDPTAEYGLSAAELPAGWRKKFTESDEATAEKIRTTLLKQWLMPFLRVLRGEKGYFTLSYGVLTITTPDNRLVDIAHAAKCNIFLDATGHREELALLLGIKPEEIYHIKQQQLPGAQVKRVQVAGLGRLGQHRGKEQQRRSQATVSELLKRHPNAGVIRFKRLALEGDYRWFIESRGVNDAQTLDTLILDGIPCENLEYLAAEFACIYGRVPVEGTSHVKTPVQLTNPLPEGIEAYFESSVSADPDFAEFVRRRILANIHQAEGRLRATRRQGEQLTVYILGDFALDVPVELVRATDITLEAASKTERLELAIRSAVEQLKATGQKVTQQAIANLAGYTRGHISRFQKLIVLLISDSKSEAIDNAPARSATIPKSPPDPPPDEIEWLSSEYLPLIADSPYVELLSLVDAYGKGGFNLIWNGATAEVQVKILSQAILSLLSGDELRQLARSVGVKL
>NC_019740.1|WP_015186261.1|71196_72000_-|hypothetical-protein
MDKTLHIHQVSPAPDALASAMESINTLSVWLVDAGLDNSAITQWKFNALAKKFPELADIIEDAKKLIGSIAPAPEIGMTVSEMAERLTSFLERKIKPAQVNQALVELGFQVRPDNGKRVWQLTESGKEYGFSRLATSKTNDWSGPQVTWREAVIPVLIDYFENAFLLEEGKSELSDSTSTPAPELEGEPESSSWMLGDRIKALKKKVTASQRLHVEMEAAEAYKERHSKPPEQEEVKGKYHDVYPAADLDLLDEAIERVLKRYAKNQ
>NC_019740.1|WP_041781552.1|72262_72661_+|hypothetical-protein
MSKVYEETYKDRLIEIYRFSQSAPGGVGSSHFFARIDNCQLPGAFDARSHNPNHPSSDTGNQSTPEPSSALAAARAYCDSEAEAQQQIATHDLQKRIEVLLQKPSAAELTHKTNLVSRALMKIRRFVGIIEK
>NC_019740.1|WP_015186263.1|73080_73389_+|hypothetical-protein
MNLRKTKKRLFTLIKIISIVFITSAIGLELWNIYALLTNNKIPASLNPVFWIERFAIAIHLVEGVIAAYKAPSRNKTPIKYGTYTFFVGTVGLLELFDKLEQ
>NC_019740.1|WP_015186265.1|73771_74026_-|hypothetical-protein
MELPDGSEKLRLKKEIAQKIRKEAERLEMSFPEMLYYIVNSYFIGQANLSQSVNQHHQKAPGVPRTSSQQWTEEEESFELDLDV

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Crispr_ID: NC_019740_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019740_9

63682-63769

Unclear

Consensus_repeat	Method
GCTTTTCACTTAGTTCTAGGGGATT	CRISPRCasFinder

1 spacers

cas1,cas4,cas6

The CRISPR arrays of NC_019740_9

>merge|NC_019740|9|63682-63769|CRISPRCasFinder
GCTTTTCACTTAGTTCTAGGGGATTTAGTTTTAGGGGACTTGCTTCCTCATCTACTAGAGATCGCTTTTCATTTAGTTCTAGGGGATT

>NC_019740|9|8|63682-63769|CRISPRCasFinder
GCTTTTCACTTAGTTCTAGGGGATT	TAGTTTTAGGGGACTTGCTTCCTCATCTACTAGAGATC
GCTTTTCATTTAGTTCTAGGGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377534
NC_019740.1\|WP_041781552.1\|72262_72661_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186268.1\|76808_77012_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019740.1\|WP_015186261.1\|71196_72000_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NC_019740.1\|WP_015186265.1\|73771_74026_-\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019740.1\|WP_041781548.1\|65674_67051_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019740.1\|WP_015186266.1\|74027_74981_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|380083
NC_019740.1\|WP_015186263.1\|73080_73389_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019740.1\|WP_015186258.1\|65117_65312_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_019740.1\|WP_041781560.1\|75191_76397_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019740.1\|WP_015186260.1\|67580_70970_+\|hypothetical-protein	unknown	unknown	unknown
NC_019740.1\|WP_015186255.1\|63280_63598_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019740.1\|WP_015186249.1\|52324_52594_-\|four-helix-bundle-protein	gnl\|CDD\|377534	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein. This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.	2.37059e-22
NC_019740.1\|WP_015186250.1\|52678_53263_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.14897e-35
NC_019740.1\|WP_015186252.1\|55432_57820_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.40334e-09
NC_019740.1\|WP_015183694.1\|58960_60184_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.90791e-16
NC_019740.1\|WP_041781548.1\|65674_67051_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.91306e-08
NC_019740.1\|WP_015186266.1\|74027_74981_-\|ParM/StbA-family-protein	gnl\|CDD\|380083	pfam17989, ALP_N, Actin like proteins N terminal domain. This is the N-terminal domain found in archaeal actin homolog Ta0583 found in thermophilic archaeon Thermoplasma acidophilum. Structural analysis indicate that the fold of Ta0583 contains the core structure of actin indicating that it belongs to the actin/Hsp70 superfamily of ATPases. Furthermore,Ta0583 co-crystallized with ADP shows that the nucleotide binds at the interface between the subdomains of Ta0583 in a manner similar to that of actin. It has been suggested that Ta0583 might function in the cellular organisation of T. acidophilum. Other family members include ParM another actin-like protein found in Staphylococcus aureus. Crystal structure co-ordinates revealed that this protein is most structurally related to the chromosomally encoded Actin-like proteins (Alp) Ta0583 from the archaea Thermoplasma acidophilum. Furthermore, biophysical analyses have suggested that ParM filaments undergo a treadmilling-like mechanism of motion in vitro similar to that of F-actin. The recruitment of ParM to the segrosome complex, was shown to be required for the conversion of static ParM filaments to a dynamic form proficient for active segregation and facilitated by the C-terminus of ParR.	3.68973e-31
NC_019740.1\|WP_015186248.1\|49495_50335_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.79974e-07
NC_019740.1\|WP_015180559.1\|50766_52074_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.13897e-11
NC_019740.1\|WP_051056028.1\|57945_58971_+\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	3.37686e-07
NC_019740.1\|WP_041781560.1\|75191_76397_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	3.18044e-22
NC_019740.1\|WP_015186251.1\|53264_54272_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.92635e-122
NC_019740.1\|WP_015186253.1\|60662_62873_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0

>NC_019740.1|WP_015186255.1|63280_63598_-|hypothetical-protein
MPLQESVLGETTKRRASGWLEHYTKSKKLKSGIIATYPRVEGERDPDNPAHWYWAYRWEEKRENAKSDNGYVTRAVSLPRDKVQAVNLAIARDWPVEKILSFIRS
>NC_019740.1|WP_015186253.1|60662_62873_-|ATP-dependent-RecD-like-DNA-helicase
MSTNSTPQLESLEGIVERITFHSDESGYTVARFKVPRTPDLVTIIGNFAQIEAGQTLKLSGIWRDHPKFGQQFQVTQYRETKPATLTGMEKYLGSGLIKGVGPVTAKRIVAHFGLETLDVIENQIERLLEVPGIAHKRVKMIQSAWEKQKAIKEVMVFLQGHGVSTTYAVKIFKQYGDAAIAKVTENPYQLAADIYGIGFVTADTLARNLGIEPGSEFRYRAGIVHVLGEAAEDGHCFLPFEELVEQTVKRLAIDDHQPQKNAIARLIQQMGQLNELVLESSPDQLLCYKPSFFQTEQNLAQRLRQQLTSPVTVDLPRVRRWLLRFREKTGIELSEQQQQAVEIAASERVLVLTGGPGCGKTFTTRTIVALWKAMGFSIALAAPTGRAAQRLSEMTGQPASTLHRLLEFDPKTFGFKHDESNPMEADAIVVDEASMLDLFLAYSLMKAVKPEAQLLLVGDIDQLPSVGPGNVLRDLIVSQCVPVARLTQVFRQAQASQIVTNAHQINLGKYPQLESVSLTPRSDCLWLGAPEPDYGVQGIMELLTDVIPQLGFNPTTDVQVLSPSTRGVVGTRNLNQVLQNLLNPPSASKAEVVRGGTILRVGDRLIQRVNDYQREVFNGDLGVIVAIDNEEQEIRVQFDQRQVTYDYADLLEVDLAWAVTIHKSQGSEYPVVVLPLFPQHYLMLSRNLLYTGLTRAKRLAVIVGPKKAVAMAVNQVKDQKRYTGLAWRLSGKVLR
>NC_019740.1|WP_015183694.1|58960_60184_+|TniQ-family-protein
MSVESWSNHQLWYSKTTTIPERSRLHPLEPIGVGTPTVESLTSYVARLAAAHRVPTGILLAQEVAQQVSRYQGNQHQGLSRWFFRVFFNDTGAWNGMGIMASEPVHVLEARTKQHQLRFLTLLRWANVLPSRGLLRTNKAWCPVCYDDWERCGKPIYEPLLWSLQVVTTCPVHQQVLWHQCPNCRRSLYPLEWNSRPGFCSRCQQWLGVSSFLSTGETSFDASPVEPPDWEWQIFVVYSVGKILEQAPFLESVPARENLAFCIDLCIQKATNGNAKAFAELMYLSASVPGEWRCGQALAQLGLLLRVCWCLSIPLVDFLTGRVVIEQPLSLKVLPITQQRRKTNRRFDALKVQMFLEAALSFEPPQSLKQVAATIGYDPGDISRFFPDLCHQISARYRLYRQAIRKS
>NC_019740.1|WP_051056028.1|57945_58971_+|AAA-family-ATPase
MFGPTGVGKTTLLHQVVKVLIEQNSRAMQLDCGHIPVAYVEARAPESGSFDWKDYYKSVLIALADPFVDYKLRTGSSRIEGRGSAQRLVKSRANLSDLREDVAAIIQQRRLIVFLVDEAQRFTKMASGRRQQDQMDAIQSMASFTSTRHGLFGTYELLQLRNLSGQLSRRSLDIHFPRYQADCSQDVKDFKRVLKSFACQMPLLEVPDLEQHWEYFYERSIGCVGIVKDWLTQALRKALGESASTLSLAHLTPYAPSVSKCMQMATEAIEGEKALLQSESELSRLRQKLGLTVKEPPTATEALLNSPTRSTANKKDKKTKKRRPGERNPQRDVIGGAPSVS
>NC_019740.1|WP_015186252.1|55432_57820_+|DDE-type-integrase/transposase/recombinase
MLDGEQFVRWCQQLALAEPTRKYIELLRSSPPARVVRSRAGNVSGRYPSRKMGVTIQFESHHNELAGIYEMEYDPDVLEYYDQPSGLKLSYQALCGRKVGVLHTPDFFVLRQTSAGWEEWKTLDELVRLSAKMPARYVQEIEGQWHCPPGEEVAQSLGLYYRIRCNAEIDWVFQNNLHFLEDYLQPSHLDLEENVRANITLLVELHPGITLGELLQQGYNCDEVYTLIAQNHLKVNWRGVNIAQLGSQRQIFPASQKVCQTETTKWRRASTLELAPNLVDLKPGSPVVWNGKSLSILNRGETHTALLNEEEKVIQLPNVALLELVKQGELTGVVTHSLPSAKEVNDLLAKASVDDCAQANRRYSIIAPYLTGELQTSNQVVSTRTIRRWLHSWQKAQEQYGCGYVGLLPRVSSKGNRQSKLPEATQKIVDEFIANNYLNLKQQGKFAVYSSLVRACEQQGITPCSYKTFVRNIHQKSNYEQALKRQGRRAAYKHEPFYWELEVNTPRHGQRPFEICHIDHTQLDIELVSSHTSVNLGRPWATFLTDAYSRRILAVYLCFDPPSYRSCMMVMRECVRRHGRLPHTIVVDGAKEFMSVYFERLLAAYSCTKKTRPAAKPRFGSVCERLFGTANTMLIHNLQGNTQINKNSRAVTKSVNPRNLAIWTLGSLYQNLCDWAYEFYDNKEHPALLKSPRAAFSDGLLQTGLRPHKLIPYDETFRILTLPTTSKGTAKVIPNQGVKINHIYYWHNSFRNPEIEKTQVLVRYDPNDVGIAYAYIKGQWVNCISQHYSSLAGHS
>NC_019740.1|WP_015186251.1|53264_54272_+|CRISPR-associated-endonuclease-Cas1
MSVLYVTQPEAVLSKKYEAFTVALKQEDGSWQKKSVPAQTVEQVVLMGNPQVTGDALVYALELGMPIHYLSEFGKYLGSALPGYSRNGPLRLAQYALYHDTKGRLELVKAIVSAKIHNQHLVLYRYKLMGNPLKSHKKLVAEQTTLDQVRGVEGLAAKDYFGCWDALLKEPWSFPRRNRRPPTDPVNSLLSFAYGLLRVQVTAAVHLAGLDPYIGYLHEVHHGQPSMVLDLMEEFRPLVADSLVLSVLSHRELQPDDFTESLGAYRLSEDGRKTFLQAFERFLTGMQWASLQISMEKLIKPSEDSVRVYVLDAGALKRTLTYGSQQPRQDTTIIL
>NC_019740.1|WP_015186250.1|52678_53263_+|CRISPR-associated-protein-Cas4
MTENYLPLAYLNAWEYCPRRFYLEYQLGEMEDNEHILLGRHLHRNINEEEINVEGDTLIYQQQWVWSDRLFVSGIIDAVEARDGELVPVEYKKGKMAQHLNDHFQLCAAALCLEERLGCCITYGEIFYHGNRRRQRVNFTPQLREATENAIASARLTATGKMPPPIDQAKKCQACSLIGICLPFEVKQLLRENV
>NC_019740.1|WP_015186249.1|52324_52594_-|four-helix-bundle-protein
MAKESFKSHEDLAIFQLAFDTAMTIFELSKKFPVEEKYSLTDQIRRSSRSVCANLAEAWRKRRYKAAFIAKLSDWSLDYDGKECRVEKQ
>NC_019740.1|WP_015180559.1|50766_52074_-|transposase
MNYKQLQEFRQQVYDLINFAQDATFELTDAVLTTRNVYSLAEFSLSPFFRRKWPSIYEALQDCRPNRNKLMRLYIKQILVQERPVLAVDHTAWARVHSPTLQDRTYCHQPSAIASNKPISIGQGYSTIAWIPEHKGSWALPLRHERITSWENPISKAAWQIKQACKYLPLRPMILLDSEYGNASLLNQTAQIEADFLMRIRSNRCLYSAPPAYTGKGRPRKHGQKFKLNDSSTWWEATEMVEVEDSRFGQLRVRMWQDLHFSGSASIAMQLILVERILPEQSHSKSQPLWLVWVGQEMLPLPEIWRQYLRRFAVDHWYRFLKQRLHWTVPQLSTPCQCERWSDLMPILTWELWLARDLVAQHHLPWQKPLSNLTPGRVAESFALLLPEIGTPAVSPKPRGKSPGWQAGNKRTKKTRYPVVKKGKTPHKKRTKKAA
>NC_019740.1|WP_015186248.1|49495_50335_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MIKSLLVGKKFGTYADTFLMLGLALLAEYALKKTQQNPSIQLIDEGTHYRIQFKKPVNLESIALLAYTNPFPPVCGKKTDRSQLPPETPIFDVVEWGEVRKLYREYLYQNHGRRETGEDTPKPPHPSTQNSAILTSMRHDKNHNKLWLIGWELRDHYGILLTSIFQAFSQSDRSTLKTATERVAELFFAATGCKLSLQASAVKVYLPTSIQGVVSAYNLKTRTLTLNGTAEIGTTGWARYRFNDPEQAKVATILAHFAEFAGVGRKTAMGMGYVALRSH
>NC_019740.1|WP_015186258.1|65117_65312_+|hypothetical-protein
MLRSSMPETTAVATFMRGWDMEKLVQASGIPIERLEEIRNGGHITASEPTGLIRTGMNPEDLKP
>NC_019740.1|WP_041781548.1|65674_67051_+|helix-turn-helix-transcriptional-regulator
MINSTAHRNLRGLIEVEEFSDPPRTEPRLYQSKPITPIATPPPMVSSLQAQLRPDQWQQDSSGISCFQHQAKGNPNNIIKHYIASPGNITVLPWDEALQIIDKFGLTTAKLHLIFAAHTMRQDKPWSSQFTLKGSDLIEEMGWDKNHNSPAYEKRKDIAMVAFVLDCLLIEATWVEGKHKKGGILASVETSRMWNVQVQLTGQRNLEGKVEQPDEVYITIQPGLWTRSFLNKAGCQAKDALYQFGYLAQEVLKIDPYHDELALRLAILLTMESRFRTSGTYEVKNLLEALVPQTVIDEARANRDKAYKLANRWNHALAALMELSQAFQVEFDPKTYPEELRPGSKARKPRGYFEQLLAAKITIHPPAPIPALLATKTKPEPTQPKLKSARRTTSSPTSQRAKLTGAQIRNARNVKGWSQATLAGWLGVSQRYVSMIERGDRIPTPEQESNFRQLLNIQ
>NC_019740.1|WP_015186260.1|67580_70970_+|hypothetical-protein
MTFRGGFRSLKRNCPICAGVRSDCRENRDNGLIHCRAPIATLPSGWRFVGEDKCGFGMYTQSTDNTDTQAWQERRQRQEQQRQRELEELARGALPSAERDTAIRKLHSYLGLGNRHRQNLRDRGLTDAAIDAGGFFTIYPDQELPYGIPANLPGVTRGKLATKVSGFACPAFDVHGRLIGWQLRVDDATDNKYRWAKGWKSSHLPNGELPITICRPVEGIKRPGVALAEGLLKPYVAAQKLGQIVIGAAGANFAGSPQQLRESLEVLKPEIITLYPDAGAVLNHHVMSQYQRTVKLIAGWGYSVQVAWWGQTIKLESPDIDELDDLGAIAYLKPAEFWQLAPSPRAARNFREMVTGWLPRIKQRLEASRKRLSAWGFGKTRETKLTQKSPKIEATEYAAGFRLDAWKKAAQEYKFIWDDSGTGSGKSFDAGRVTPELLECDSEALLRSADRVFYVTSDPRNPTTDTLADWGLLNGRHQGLVTDSHGKIRRSKPGESYTIQPNCYRVDTISSLREAGIEGADSSELICQTCPFYEACKGGHVFGYLNARMNALKLPRVRSHPASLPVTAGENAFDYSGSVLIWEEWNTILKNTRQITVTERDLEKLMLQLATTAPTHFFLLSPLLTALRQLIAGVIKQPNRFGWNHHALLRQLPELPADIDLEAIASVLEPDLEILDPTAEYGLSAAELPAGWRKKFTESDEATAEKIRTTLLKQWLMPFLRVLRGEKGYFTLSYGVLTITTPDNRLVDIAHAAKCNIFLDATGHREELALLLGIKPEEIYHIKQQQLPGAQVKRVQVAGLGRLGQHRGKEQQRRSQATVSELLKRHPNAGVIRFKRLALEGDYRWFIESRGVNDAQTLDTLILDGIPCENLEYLAAEFACIYGRVPVEGTSHVKTPVQLTNPLPEGIEAYFESSVSADPDFAEFVRRRILANIHQAEGRLRATRRQGEQLTVYILGDFALDVPVELVRATDITLEAASKTERLELAIRSAVEQLKATGQKVTQQAIANLAGYTRGHISRFQKLIVLLISDSKSEAIDNAPARSATIPKSPPDPPPDEIEWLSSEYLPLIADSPYVELLSLVDAYGKGGFNLIWNGATAEVQVKILSQAILSLLSGDELRQLARSVGVKL
>NC_019740.1|WP_015186261.1|71196_72000_-|hypothetical-protein
MDKTLHIHQVSPAPDALASAMESINTLSVWLVDAGLDNSAITQWKFNALAKKFPELADIIEDAKKLIGSIAPAPEIGMTVSEMAERLTSFLERKIKPAQVNQALVELGFQVRPDNGKRVWQLTESGKEYGFSRLATSKTNDWSGPQVTWREAVIPVLIDYFENAFLLEEGKSELSDSTSTPAPELEGEPESSSWMLGDRIKALKKKVTASQRLHVEMEAAEAYKERHSKPPEQEEVKGKYHDVYPAADLDLLDEAIERVLKRYAKNQ
>NC_019740.1|WP_041781552.1|72262_72661_+|hypothetical-protein
MSKVYEETYKDRLIEIYRFSQSAPGGVGSSHFFARIDNCQLPGAFDARSHNPNHPSSDTGNQSTPEPSSALAAARAYCDSEAEAQQQIATHDLQKRIEVLLQKPSAAELTHKTNLVSRALMKIRRFVGIIEK
>NC_019740.1|WP_015186263.1|73080_73389_+|hypothetical-protein
MNLRKTKKRLFTLIKIISIVFITSAIGLELWNIYALLTNNKIPASLNPVFWIERFAIAIHLVEGVIAAYKAPSRNKTPIKYGTYTFFVGTVGLLELFDKLEQ
>NC_019740.1|WP_015186265.1|73771_74026_-|hypothetical-protein
MELPDGSEKLRLKKEIAQKIRKEAERLEMSFPEMLYYIVNSYFIGQANLSQSVNQHHQKAPGVPRTSSQQWTEEEESFELDLDV
>NC_019740.1|WP_015186266.1|74027_74981_-|ParM/StbA-family-protein
MKSAKPHKNQLHFVGGIDNGFGNYKLLLEEHPLIVVPSYLSEEKMEPVPGRVRIGEREFTVGDSARRTGRYYSRNVDDAASKIQYALPMLLGALAHLPHRKEWRLQIAASIHDCDNLKEKLIEALSGEHECILSGYASKVCVRVVKVLPEGMGALVGTQLPGKLTLLDFGTGTTLFSRYSQGKREIHEPYPCGVEHLIELISKEMKAINDGLPGDLYLIRLGLENGTFYYGRKQSFKSIYKKCLSEWFDNYLRQTVRRAKEAYEQGDQVWCIGGGCLLPGLGQSLTKIGFRVHESPLEANVRGLLLVARQVRGKVEV
>NC_019740.1|WP_041781560.1|75191_76397_-|glutathione-S-transferase-family-protein
MTSAPLSWRELETLTDYQIDPVNGPTNAQARLRLFGLPQADVRVTLYRDNHAWCPYCQKVWLWLEEKQIPYRIEKVTMFCYGEKESWYKRIVPSGMLPALELDGRLITESDDILLALELVFGPLGQGMESPTVLPLRQLERLLFRAWCSWLCYPMVSPQQEQRHREQFIKVVNKVEYALASTPGPYFLEEFGTADVIFTPYVERMNASLYYYKGYSLREENPYLAAWFDGMESRPTYRGTQSDFHTHAHDLPPQMGGCIENGEPPMLLNKNRVDNGPWIGLPDVGYPEPESSRAEALIRVILHRANIIRVNPADDELFEIALRCALTWMMTGVVCVPPTGSDKALRYLRDRINVPRDMSIFAAKRLREALEKTACFVGDEQGPPIPIKHRRDQDPAYFATN
>NC_019740.1|WP_015186268.1|76808_77012_-|hypothetical-protein
MLFIRDIVQQALATGYLTIAAQEQLRQLLQTTKYGKEDINAFMRLQKAAMDGHVQQEKSELIRAGAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019740_1	1.1\|8084\|35\|NC_019740\|PILER-CR	8084-8118	35	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	8084-8118	0	1.0
NC_019740_1	1.2\|8158\|36\|NC_019740\|PILER-CR	8158-8193	36	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	8158-8193	0	1.0
NC_019740_2	2.1\|11275\|36\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11275-11310	36	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11275-11310	0	1.0
NC_019740_2	2.2\|11346\|40\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11346-11385	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11346-11385	0	1.0
NC_019740_2	2.3\|11421\|38\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11421-11458	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11421-11458	0	1.0
NC_019740_2	2.4\|11494\|37\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11494-11530	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11494-11530	0	1.0
NC_019740_2	2.5\|11566\|44\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11566-11609	44	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11566-11609	0	1.0
NC_019740_2	2.6\|11645\|41\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11645-11685	41	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11645-11685	0	1.0
NC_019740_2	2.7\|11721\|34\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	11721-11754	34	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	11721-11754	0	1.0
NC_019740_3	3.1\|15530\|38\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15530-15567	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15530-15567	0	1.0
NC_019740_3	3.2\|15603\|37\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15603-15639	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15603-15639	0	1.0
NC_019740_3	3.3\|15675\|39\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15675-15713	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15675-15713	0	1.0
NC_019740_3	3.4\|15749\|35\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15749-15783	35	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15749-15783	0	1.0
NC_019740_3	3.5\|15819\|37\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15819-15855	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15819-15855	0	1.0
NC_019740_3	3.6\|15891\|38\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15891-15928	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15891-15928	0	1.0
NC_019740_3	3.7\|15964\|37\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	15964-16000	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	15964-16000	0	1.0
NC_019740_3	3.8\|16036\|40\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	16036-16075	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	16036-16075	0	1.0
NC_019740_3	3.9\|16111\|38\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	16111-16148	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	16111-16148	0	1.0
NC_019740_3	3.10\|16184\|39\|NC_019740\|PILER-CR,CRISPRCasFinder,CRT	16184-16222	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	16184-16222	0	1.0
NC_019740_4	4.1\|30365\|34\|NC_019740\|PILER-CR,CRT	30365-30398	34	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	30365-30398	0	1.0
NC_019740_4	4.2\|30436\|36\|NC_019740\|PILER-CR,CRT	30436-30471	36	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	30436-30471	0	1.0
NC_019740_4	4.3\|30509\|36\|NC_019740\|PILER-CR,CRT	30509-30544	36	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	30509-30544	0	1.0
NC_019740_4	4.4\|30364\|35\|NC_019740\|CRISPRCasFinder	30364-30398	35	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	30364-30398	0	1.0
NC_019740_4	4.5\|30435\|37\|NC_019740\|CRISPRCasFinder	30435-30471	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	30435-30471	0	1.0
NC_019740_4	4.6\|30508\|37\|NC_019740\|CRISPRCasFinder	30508-30544	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	30508-30544	0	1.0
NC_019740_5	5.1\|35769\|50\|NC_019740\|CRISPRCasFinder	35769-35818	50	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	35769-35818	0	1.0
NC_019740_5	5.2\|35842\|48\|NC_019740\|CRISPRCasFinder	35842-35889	48	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	35842-35889	0	1.0
NC_019740_6	6.1\|49010\|44\|NC_019740\|CRISPRCasFinder	49010-49053	44	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	49010-49053	0	1.0
NC_019740_7	7.1\|54527\|33\|NC_019740\|PILER-CR,CRT	54527-54559	33	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54527-54559	0	1.0
NC_019740_7	7.2\|54597\|42\|NC_019740\|PILER-CR,CRT	54597-54638	42	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54597-54638	0	1.0
NC_019740_7	7.3\|54676\|34\|NC_019740\|PILER-CR,CRT	54676-54709	34	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54676-54709	0	1.0
NC_019740_7	7.4\|54747\|34\|NC_019740\|PILER-CR,CRT	54747-54780	34	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54747-54780	0	1.0
NC_019740_7	7.5\|54818\|38\|NC_019740\|PILER-CR,CRT	54818-54855	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54818-54855	0	1.0
NC_019740_7	7.6\|54893\|40\|NC_019740\|PILER-CR,CRT	54893-54932	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54893-54932	0	1.0
NC_019740_7	7.6\|54893\|40\|NC_019740\|PILER-CR,CRT	54893-54932	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54970-55009	0	1.0
NC_019740_7	7.7\|54970\|40\|NC_019740\|PILER-CR,CRT	54970-55009	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54893-54932	0	1.0
NC_019740_7	7.7\|54970\|40\|NC_019740\|PILER-CR,CRT	54970-55009	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54970-55009	0	1.0
NC_019740_7	7.8\|55047\|40\|NC_019740\|PILER-CR,CRT	55047-55086	40	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	55047-55086	0	1.0
NC_019740_7	7.9\|55124\|37\|NC_019740\|PILER-CR,CRT	55124-55160	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	55124-55160	0	1.0
NC_019740_7	7.10\|54528\|32\|NC_019740\|CRISPRCasFinder	54528-54559	32	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54528-54559	0	1.0
NC_019740_7	7.11\|54598\|41\|NC_019740\|CRISPRCasFinder	54598-54638	41	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54598-54638	0	1.0
NC_019740_7	7.12\|54677\|33\|NC_019740\|CRISPRCasFinder	54677-54709	33	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54677-54709	0	1.0
NC_019740_7	7.13\|54748\|33\|NC_019740\|CRISPRCasFinder	54748-54780	33	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54748-54780	0	1.0
NC_019740_7	7.14\|54819\|37\|NC_019740\|CRISPRCasFinder	54819-54855	37	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54819-54855	0	1.0
NC_019740_7	7.15\|54894\|39\|NC_019740\|CRISPRCasFinder	54894-54932	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54894-54932	0	1.0
NC_019740_7	7.15\|54894\|39\|NC_019740\|CRISPRCasFinder	54894-54932	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54971-55009	0	1.0
NC_019740_7	7.16\|54971\|39\|NC_019740\|CRISPRCasFinder	54971-55009	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54894-54932	0	1.0
NC_019740_7	7.16\|54971\|39\|NC_019740\|CRISPRCasFinder	54971-55009	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	54971-55009	0	1.0
NC_019740_7	7.17\|55048\|39\|NC_019740\|CRISPRCasFinder	55048-55086	39	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	55048-55086	0	1.0
NC_019740_7	7.18\|55125\|36\|NC_019740\|CRISPRCasFinder	55125-55160	36	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	55125-55160	0	1.0
NC_019740_8	8.1\|60386\|32\|NC_019740\|PILER-CR	60386-60417	32	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	60386-60417	0	1.0
NC_019740_8	8.2\|60458\|35\|NC_019740\|PILER-CR	60458-60492	35	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	60458-60492	0	1.0
NC_019740_8	8.3\|60533\|35\|NC_019740\|PILER-CR	60533-60567	35	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	60533-60567	0	1.0
NC_019740_8	8.4\|60386\|35\|NC_019740\|CRISPRCasFinder,CRT	60386-60420	35	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	60386-60420	0	1.0
NC_019740_8	8.5\|60458\|38\|NC_019740\|CRISPRCasFinder,CRT	60458-60495	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	60458-60495	0	1.0
NC_019740_8	8.6\|60533\|38\|NC_019740\|CRISPRCasFinder,CRT	60533-60570	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	60533-60570	0	1.0
NC_019740_9	9.1\|63707\|38\|NC_019740\|CRISPRCasFinder	63707-63744	38	NC_019740	Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence	63707-63744	0	1.0
NC_019740_4	4.1\|30365\|34\|NC_019740\|PILER-CR,CRT	30365-30398	34	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	55486-55519	10	0.706
NC_019740_4	4.1\|30365\|34\|NC_019740\|PILER-CR,CRT	30365-30398	34	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	231168-231201	10	0.706
NC_019740_4	4.1\|30365\|34\|NC_019740\|PILER-CR,CRT	30365-30398	34	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	491396-491429	10	0.706
NC_019740_4	4.1\|30365\|34\|NC_019740\|PILER-CR,CRT	30365-30398	34	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	576674-576707	10	0.706
NC_019740_4	4.1\|30365\|34\|NC_019740\|PILER-CR,CRT	30365-30398	34	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	207778-207811	10	0.706
NC_019740_4	4.4\|30364\|35\|NC_019740\|CRISPRCasFinder	30364-30398	35	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	55486-55520	11	0.686
NC_019740_4	4.4\|30364\|35\|NC_019740\|CRISPRCasFinder	30364-30398	35	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	231168-231202	11	0.686
NC_019740_4	4.4\|30364\|35\|NC_019740\|CRISPRCasFinder	30364-30398	35	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	491395-491429	11	0.686
NC_019740_4	4.4\|30364\|35\|NC_019740\|CRISPRCasFinder	30364-30398	35	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	576673-576707	11	0.686
NC_019740_4	4.4\|30364\|35\|NC_019740\|CRISPRCasFinder	30364-30398	35	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	207777-207811	11	0.686

1. spacer 1.1|8084|35|NC_019740|PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gttgaattcacattcacggatgacggaagtagcag	CRISPR spacer
gttgaattcacattcacggatgacggaagtagcag	Protospacer
***********************************

2. spacer 1.2|8158|36|NC_019740|PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

atggatgacaagccatgagaattcttgctctgactg	CRISPR spacer
atggatgacaagccatgagaattcttgctctgactg	Protospacer
************************************

3. spacer 2.1|11275|36|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tgtatgcttcaagcggtgttttaccgctctggatta	CRISPR spacer
tgtatgcttcaagcggtgttttaccgctctggatta	Protospacer
************************************

4. spacer 2.2|11346|40|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gcaacgttcataataagaacactgctacttccgtcatccg	CRISPR spacer
gcaacgttcataataagaacactgctacttccgtcatccg	Protospacer
****************************************

5. spacer 2.3|11421|38|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

atttggctgggcataggtatatgtgcctgatccgatta	CRISPR spacer
atttggctgggcataggtatatgtgcctgatccgatta	Protospacer
**************************************

6. spacer 2.4|11494|37|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

cctagggttcttttcctttctttctcacaatcattga	CRISPR spacer
cctagggttcttttcctttctttctcacaatcattga	Protospacer
*************************************

7. spacer 2.5|11566|44|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gtggtggtatttcgggggatgtaccggggttgggctgactgggg	CRISPR spacer
gtggtggtatttcgggggatgtaccggggttgggctgactgggg	Protospacer
********************************************

8. spacer 2.6|11645|41|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attgtaaaaccataactttggaaactttctccctcgataaa	CRISPR spacer
attgtaaaaccataactttggaaactttctccctcgataaa	Protospacer
*****************************************

9. spacer 2.7|11721|34|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

cggtttgggttcggacggggttttctccgctaac	CRISPR spacer
cggtttgggttcggacggggttttctccgctaac	Protospacer
**********************************

10. spacer 3.1|15530|38|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tttcctagctctctcggttgcgtctgttggagttaagt	CRISPR spacer
tttcctagctctctcggttgcgtctgttggagttaagt	Protospacer
**************************************

11. spacer 3.2|15603|37|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

atttctgggctattggtaccgggtgtgggcatcgccg	CRISPR spacer
atttctgggctattggtaccgggtgtgggcatcgccg	Protospacer
*************************************

12. spacer 3.3|15675|39|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttctgaccctagacgcagcttcttctggacttaaatagt	CRISPR spacer
ttctgaccctagacgcagcttcttctggacttaaatagt	Protospacer
***************************************

13. spacer 3.4|15749|35|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tcggatggaattagagctttcatacacagttccgt	CRISPR spacer
tcggatggaattagagctttcatacacagttccgt	Protospacer
***********************************

14. spacer 3.5|15819|37|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

atagcggcaatggcaacaacgatggcgatgaaatttt	CRISPR spacer
atagcggcaatggcaacaacgatggcgatgaaatttt	Protospacer
*************************************

15. spacer 3.6|15891|38|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ccaatttggtaaccactaactagttcattttccactaa	CRISPR spacer
ccaatttggtaaccactaactagttcattttccactaa	Protospacer
**************************************

16. spacer 3.7|15964|37|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tcatacacagttccgtcaaccgtggccaaacgcgagc	CRISPR spacer
tcatacacagttccgtcaaccgtggccaaacgcgagc	Protospacer
*************************************

17. spacer 3.8|16036|40|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attttacgcttttcaaggcattcttcgtgtagaaataata	CRISPR spacer
attttacgcttttcaaggcattcttcgtgtagaaataata	Protospacer
****************************************

18. spacer 3.9|16111|38|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attgttctgattgagtgtttcgccaagcaccccgattg	CRISPR spacer
attgttctgattgagtgtttcgccaagcaccccgattg	Protospacer
**************************************

19. spacer 3.10|16184|39|NC_019740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gcgagtcctaccgatgttgcgaaaacactgattgcactt	CRISPR spacer
gcgagtcctaccgatgttgcgaaaacactgattgcactt	Protospacer
***************************************

20. spacer 4.1|30365|34|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
gttggttgaataacaggcgcaggagcctgttgtg	Protospacer
**********************************

21. spacer 4.2|30436|36|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tttgtaccaggagtagaggtagggggtgtggtagta	CRISPR spacer
tttgtaccaggagtagaggtagggggtgtggtagta	Protospacer
************************************

22. spacer 4.3|30509|36|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

agagtcggaggaagttggagggttttcctccaaatc	CRISPR spacer
agagtcggaggaagttggagggttttcctccaaatc	Protospacer
************************************

23. spacer 4.4|30364|35|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tgttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
tgttggttgaataacaggcgcaggagcctgttgtg	Protospacer
***********************************

24. spacer 4.5|30435|37|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gtttgtaccaggagtagaggtagggggtgtggtagta	CRISPR spacer
gtttgtaccaggagtagaggtagggggtgtggtagta	Protospacer
*************************************

25. spacer 4.6|30508|37|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gagagtcggaggaagttggagggttttcctccaaatc	CRISPR spacer
gagagtcggaggaagttggagggttttcctccaaatc	Protospacer
*************************************

26. spacer 5.1|35769|50|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

cttttcatacctaacattaggtatgggtcacttttgggtttacacaagca	CRISPR spacer
cttttcatacctaacattaggtatgggtcacttttgggtttacacaagca	Protospacer
**************************************************

27. spacer 5.2|35842|48|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ctattggtggttggggtgattgtgatgcagttgttctttccgaaacct	CRISPR spacer
ctattggtggttggggtgattgtgatgcagttgttctttccgaaacct	Protospacer
************************************************

28. spacer 6.1|49010|44|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagaggggttaatgaagatttagaggaggtaagtggtggggt	CRISPR spacer
aaaagaggggttaatgaagatttagaggaggtaagtggtggggt	Protospacer
********************************************

29. spacer 7.1|54527|33|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

cttcatcgccatcacgggaggggcggggaggaa	CRISPR spacer
cttcatcgccatcacgggaggggcggggaggaa	Protospacer
*********************************

30. spacer 7.2|54597|42|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

atacgaggaataccatcaattccacctaaattctcaagtgcg	CRISPR spacer
atacgaggaataccatcaattccacctaaattctcaagtgcg	Protospacer
******************************************

31. spacer 7.3|54676|34|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

aacaggtaacatgtttgaagctacattaccaaaa	CRISPR spacer
aacaggtaacatgtttgaagctacattaccaaaa	Protospacer
**********************************

32. spacer 7.4|54747|34|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

agttatttaaactcctgtcatttattgcactagt	CRISPR spacer
agttatttaaactcctgtcatttattgcactagt	Protospacer
**********************************

33. spacer 7.5|54818|38|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

aactgtataaccttaagtatttagcttaagtaaccttg	CRISPR spacer
aactgtataaccttaagtatttagcttaagtaaccttg	Protospacer
**************************************

34. spacer 7.6|54893|40|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
attggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
****************************************

35. spacer 7.6|54893|40|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
attggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
****************************************

36. spacer 7.7|54970|40|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
attggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
****************************************

37. spacer 7.7|54970|40|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

attggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
attggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
****************************************

38. spacer 7.8|55047|40|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gttgaaatatacattgttctaacctcgtattaaatcaaaa	CRISPR spacer
gttgaaatatacattgttctaacctcgtattaaatcaaaa	Protospacer
****************************************

39. spacer 7.9|55124|37|NC_019740|PILER-CR,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gaggtgatcgaagaaagttcaaattcaggtgaagaca	CRISPR spacer
gaggtgatcgaagaaagttcaaattcaggtgaagaca	Protospacer
*************************************

40. spacer 7.10|54528|32|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttcatcgccatcacgggaggggcggggaggaa	CRISPR spacer
ttcatcgccatcacgggaggggcggggaggaa	Protospacer
********************************

41. spacer 7.11|54598|41|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tacgaggaataccatcaattccacctaaattctcaagtgcg	CRISPR spacer
tacgaggaataccatcaattccacctaaattctcaagtgcg	Protospacer
*****************************************

42. spacer 7.12|54677|33|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

acaggtaacatgtttgaagctacattaccaaaa	CRISPR spacer
acaggtaacatgtttgaagctacattaccaaaa	Protospacer
*********************************

43. spacer 7.13|54748|33|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

gttatttaaactcctgtcatttattgcactagt	CRISPR spacer
gttatttaaactcctgtcatttattgcactagt	Protospacer
*********************************

44. spacer 7.14|54819|37|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

actgtataaccttaagtatttagcttaagtaaccttg	CRISPR spacer
actgtataaccttaagtatttagcttaagtaaccttg	Protospacer
*************************************

45. spacer 7.15|54894|39|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
ttggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
***************************************

46. spacer 7.15|54894|39|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
ttggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
***************************************

47. spacer 7.16|54971|39|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
ttggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
***************************************

48. spacer 7.16|54971|39|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttggacgctgtgccaatttctcagccattgaacaagcga	CRISPR spacer
ttggacgctgtgccaatttctcagccattgaacaagcga	Protospacer
***************************************

49. spacer 7.17|55048|39|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaaatatacattgttctaacctcgtattaaatcaaaa	CRISPR spacer
ttgaaatatacattgttctaacctcgtattaaatcaaaa	Protospacer
***************************************

50. spacer 7.18|55125|36|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

aggtgatcgaagaaagttcaaattcaggtgaagaca	CRISPR spacer
aggtgatcgaagaaagttcaaattcaggtgaagaca	Protospacer
************************************

51. spacer 8.1|60386|32|NC_019740|PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tagccttagaatgggggaacctcttcagattt	CRISPR spacer
tagccttagaatgggggaacctcttcagattt	Protospacer
********************************

52. spacer 8.2|60458|35|NC_019740|PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

cggttgacatcctcccaccgctaattcggagtacc	CRISPR spacer
cggttgacatcctcccaccgctaattcggagtacc	Protospacer
***********************************

53. spacer 8.3|60533|35|NC_019740|PILER-CR matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ggacggctgatcacaatttggctaatgcgaccttt	CRISPR spacer
ggacggctgatcacaatttggctaatgcgaccttt	Protospacer
***********************************

54. spacer 8.4|60386|35|NC_019740|CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tagccttagaatgggggaacctcttcagatttctc	CRISPR spacer
tagccttagaatgggggaacctcttcagatttctc	Protospacer
***********************************

55. spacer 8.5|60458|38|NC_019740|CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

cggttgacatcctcccaccgctaattcggagtaccgaa	CRISPR spacer
cggttgacatcctcccaccgctaattcggagtaccgaa	Protospacer
**************************************

56. spacer 8.6|60533|38|NC_019740|CRISPRCasFinder,CRT matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

ggacggctgatcacaatttggctaatgcgacctttgaa	CRISPR spacer
ggacggctgatcacaatttggctaatgcgacctttgaa	Protospacer
**************************************

57. spacer 9.1|63707|38|NC_019740|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 0, identity: 1.0

tagttttaggggacttgcttcctcatctactagagatc	CRISPR spacer
tagttttaggggacttgcttcctcatctactagagatc	Protospacer
**************************************

58. spacer 4.1|30365|34|NC_019740|PILER-CR,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 10, identity: 0.706

gttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
gttgggtgaataacaggtgcaggagggaggaact	Protospacer
***** ***********.*******   *  ..

59. spacer 4.1|30365|34|NC_019740|PILER-CR,CRT matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 10, identity: 0.706

gttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
gttgggtgaataacaggtgcaggagggaggaact	Protospacer
***** ***********.*******   *  ..

60. spacer 4.1|30365|34|NC_019740|PILER-CR,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 10, identity: 0.706

gttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
gttgggtgaataacaggtgcaggagggaggaact	Protospacer
***** ***********.*******   *  ..

61. spacer 4.1|30365|34|NC_019740|PILER-CR,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 10, identity: 0.706

gttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
gttgggtgaataacaggtgcaggagggaggaact	Protospacer
***** ***********.*******   *  ..

62. spacer 4.1|30365|34|NC_019740|PILER-CR,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 10, identity: 0.706

gttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
gttgggtgaataacaggtgcaggagggaggaact	Protospacer
***** ***********.*******   *  ..

63. spacer 4.4|30364|35|NC_019740|CRISPRCasFinder matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 11, identity: 0.686

tgttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
agttgggtgaataacaggtgcaggagggaggaact	Protospacer
 ***** ***********.*******   *  ..

64. spacer 4.4|30364|35|NC_019740|CRISPRCasFinder matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 11, identity: 0.686

tgttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
agttgggtgaataacaggtgcaggagggaggaact	Protospacer
 ***** ***********.*******   *  ..

65. spacer 4.4|30364|35|NC_019740|CRISPRCasFinder matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 11, identity: 0.686

tgttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
agttgggtgaataacaggtgcaggagggaggaact	Protospacer
 ***** ***********.*******   *  ..

66. spacer 4.4|30364|35|NC_019740|CRISPRCasFinder matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 11, identity: 0.686

tgttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
agttgggtgaataacaggtgcaggagggaggaact	Protospacer
 ***** ***********.*******   *  ..

67. spacer 4.4|30364|35|NC_019740|CRISPRCasFinder matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 11, identity: 0.686

tgttggttgaataacaggcgcaggagcctgttgtg	CRISPR spacer
agttgggtgaataacaggtgcaggagggaggaact	Protospacer
 ***** ***********.*******   *  ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_019739

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage