CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019747	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.04, complete sequence	0 crisprs	NA	0	0	0	0
NC_019745	Gloeocapsa sp. PCC 7428, complete genome	10 crisprs	csa3,DinG,Cas14u_CAS-V,csb2gr5,cas7,cas8u1,cas3,c2c9_V-U4,cas14j,WYL,cas6,cas8b3,cas1,cas2,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas4	0	6	1	0
NC_020051	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.02, complete sequence	0 crisprs	csa3,cas3	0	0	0	0
NC_019759	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.03, complete sequence	0 crisprs	NA	0	0	0	0
NC_019746	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence	0 crisprs	NA	0	0	0	0

1. NC_019745

CRISPR-Cas detection and classification

Crispr_ID: NC_019745_1

• CRISPR_ID: NC_019745_1
• CRISPR_location: 560388-560470
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_1

Consensus_repeat	Method
AGTTATGCCGATTTGAGTCAAGC	CRISPRCasFinder

spacers of NC_019745_1

>1.1|560411|37|NC_019745|CRISPRCasFinder
AAAGTTGAGCAACGCAAATCTAAGAGGTGCTGATCTA

CRISPR arrays and Neighbor proteins around NC_019745_1

CRISPR arrays

The CRISPR arrays of NC_019745_1

>merge|NC_019745|1|560388-560470|CRISPRCasFinder
AGTTATGCCGATTTGAGTCAAGCAAAGTTGAGCAACGCAAATCTAAGAGGTGCTGATCTAAGTTATGCCGATTTGAGCCAAGC

>NC_019745|1|1|560388-560470|CRISPRCasFinder
AGTTATGCCGATTTGAGTCAAGC	AAAGTTGAGCAACGCAAATCTAAGAGGTGCTGATCTA
AGTTATGCCGATTTGAGCCAAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015186979.1|558687_560007_-|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|372603
NC_019745.1|WP_015186986.1|564181_565216_-|formamidase	unknown	unknown	gnl|CDD|183950
NC_019745.1|WP_015186988.1|565726_566647_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|224005
NC_019745.1|WP_155823559.1|567825_569019_-|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|380618
NC_019745.1|WP_015186978.1|557434_558589_-|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl|CDD|200272
NC_019745.1|WP_015186976.1|555267_556065_-|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl|CDD|274568
NC_019745.1|WP_051038490.1|556180_557323_-|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl|CDD|132449
NC_019745.1|WP_015186982.1|561309_561657_-|anti-ECFsigma-factor,-ChrR	unknown	unknown	gnl|CDD|315619
NC_019745.1|WP_015186984.1|561850_563419_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226364
NC_019745.1|WP_015186972.1|551517_552399_-|fructosamine-kinase-family-protein	unknown	unknown	gnl|CDD|367711
NC_019745.1|WP_015186987.1|565288_565690_-|hypothetical-protein	unknown	unknown	gnl|CDD|236177
NC_019745.1|WP_015186981.1|560644_561319_-|cysteine-hydrolase	unknown	unknown	gnl|CDD|238245
NC_019745.1|WP_015186975.1|554483_555239_-|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl|CDD|274567
NC_019745.1|WP_015186985.1|563434_564148_-|cysteine-hydrolase	unknown	unknown	gnl|CDD|238245
NC_019745.1|WP_015186970.1|545169_550398_+|DUF748-domain-containing-protein	unknown	unknown	gnl|CDD|367909
NC_019745.1|WP_015186971.1|550489_551386_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_019745.1|WP_041918837.1|566665_567742_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|226962
NC_019745.1|WP_015186974.1|553738_553921_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015186973.1|552395_553670_-|insulinase-family-protein	unknown	unknown	gnl|CDD|223685
NC_019745.1|WP_015186991.1|569407_573031_+|NACHT-domain-containing-protein	unknown	unknown	gnl|CDD|238121

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015186979.1|558687_560007_-|urea-ABC-transporter-substrate-binding-protein	gnl|CDD|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NC_019745.1|WP_015186986.1|564181_565216_-|formamidase	gnl|CDD|183950	PRK13287, amiF, formamidase; Provisional.	0
NC_019745.1|WP_015186988.1|565726_566647_-|ABC-transporter-permease	gnl|CDD|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	3.81707e-85
NC_019745.1|WP_155823559.1|567825_569019_-|BMP-family-ABC-transporter-substrate-binding-protein	gnl|CDD|380618	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	3.67381e-125
NC_019745.1|WP_015186978.1|557434_558589_-|urea-ABC-transporter-permease-subunit-UrtB	gnl|CDD|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.00671e-69
NC_019745.1|WP_015186976.1|555267_556065_-|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl|CDD|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.39607e-160
NC_019745.1|WP_051038490.1|556180_557323_-|urea-ABC-transporter-permease-subunit-UrtC	gnl|CDD|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.09565e-159
NC_019745.1|WP_015186982.1|561309_561657_-|anti-ECFsigma-factor,-ChrR	gnl|CDD|315619	pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR.	2.2871e-19
NC_019745.1|WP_015186984.1|561850_563419_-|ABC-transporter-ATP-binding-protein	gnl|CDD|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NC_019745.1|WP_015186972.1|551517_552399_-|fructosamine-kinase-family-protein	gnl|CDD|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	2.5059e-155
NC_019745.1|WP_015186987.1|565288_565690_-|hypothetical-protein	gnl|CDD|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	6.5527e-32
NC_019745.1|WP_015186973.1|552395_553670_-|insulinase-family-protein	gnl|CDD|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.47688e-106
NC_019745.1|WP_015186975.1|554483_555239_-|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl|CDD|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	4.71934e-132
NC_019745.1|WP_015186985.1|563434_564148_-|cysteine-hydrolase	gnl|CDD|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.97139e-54
NC_019745.1|WP_015186970.1|545169_550398_+|DUF748-domain-containing-protein	gnl|CDD|367909	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex. TamB is an integral inner membrane protein that forms a complex - the translocation and assembly module or TAM - with the outer membrane protein, TamA. TAM is responsible for the efficient secretion of the adhesin protein Ag43 in E.coli K-12.	2.31595e-47
NC_019745.1|WP_015186971.1|550489_551386_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.01945e-93
NC_019745.1|WP_041918837.1|566665_567742_-|ABC-transporter-permease	gnl|CDD|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.99333e-81
NC_019745.1|WP_015186981.1|560644_561319_-|cysteine-hydrolase	gnl|CDD|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	9.96806e-49
NC_019745.1|WP_015186991.1|569407_573031_+|NACHT-domain-containing-protein	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.06637e-110

Protein sequences

>NC_019745.1|WP_015186979.1|558687_560007_-|urea-ABC-transporter-substrate-binding-protein
MVSRFNRRKFLVYGSATLGSSLFLKACTNNQTTTSATNASSPASTTTTASGGDTIKVGILHSLSGTMAISEQSVVDAEQLAIEEINNAGGVLGRRIEAIVEDGASNWDTFREKATKLIDQDRVVAVFGCWTSASRKNVLPVFEQRDHMLWYPVQYEGQECSKNIFYTGAAPNQQIEPSVDWLLQNKGKDFFLVGSDYVFPRTANTIIKAQVAEKGGRIVGEDYLPLGNTEVTPIITKIRQALPNGGVIYNTLNGDSNVAFFKQLQGAGLTPDRYPSMSVSIAEEEVRAIGADYLKGHYAAWNYFQTVETPANQRFVQAFKQKYGQDRVTNDPMEAAYIAVYLWKQAVEKAGTAEDLAKVRAAAYGQTLDAPEGTVTMQPNHHISKVVRIGEVRDDGMFEIINSTDSAVEPIPWNQFVKETKGYACDWSDPNKGGRFKMT
>NC_019745.1|WP_015186978.1|557434_558589_-|urea-ABC-transporter-permease-subunit-UrtB
MLIGLFDGLFNGISIGAVLLIAALGLAIVFGLMGVINLAHGELMMLGAYTTFVVQNGFRQFAEPFFDIYIFFALILAFLVTAGVGLILERGVIRYLYGRPLETLLATWGVSLILQQFVRSVNWVLVIGIGIFCLLFFGGLWILNRRQSPQRKWFVAALLPLSLGIAIAAGRFLADTYQLAVTKPWFGAQNVDVSAPTWLRGGLPLGNFQLPYARLFIIALTIVCVAGLYYFLQRSPWGLRIRAVTQNRSMSSCLGIPTQKVDALTFALGSGLAGVAGCAISYLGSVGPNTGQNYIVDTFMVVVVGGVGKLVGTIVAALAIGIVNYLVGSGTLAILFTPIQPLADFFTFFATTSMAKVMVFALIIAFLQVRPGGIFPQKGRTVDA
>NC_019745.1|WP_051038490.1|556180_557323_-|urea-ABC-transporter-permease-subunit-UrtC
MGVKGRKRQRIFLIEAAIVVAIALLLIFVMPAVLTSFRLNLLGRFLALAIVALGIDLIWGYTGLLSLGHGIFFALGGYAIAMHIKLEDAAGGLPEFMSLYGGTELPWFWRPFYSFPFATFAVVTIPALLAGLLGYLVFRNRIKGVYFSILTQAATIVFFNFFNGQQKLFNGTNGLTNFQTLLGASVNTQSAQFTFYTLTILLLIGAYALCRWLTSGRFGRLLMAIRDDESRVRFSGYNPTEFKVLVFAVSGALAGIAGAMYTLQSGSVSPRLMDVAFSIEMVIWVAIGGRGTLVGAILGALLVNFARSFLSEQFAEIWLFFQGALFLIVVTVLPDGIVGWLRSEGFQRLRGRKPAFTYPSLEEDPEVQQEKQELEAKSSE
>NC_019745.1|WP_015186976.1|555267_556065_-|urea-ABC-transporter-ATP-binding-protein-UrtD
MQEKILEIENVTVSFDGFKALNNLNFNLDVGELRVIIGPNGAGKTTFLDVITGKTKPTQGRVLFKGRNLRSLSEHQIARLGIGRKFQTPRVYLNLTPRENLELTSNRKKNIWSTLFGKPKSAERHSIAGLLETIGLTSRADIPAGLLSHGEKQRLEIGMLVAQSPDLLLVDEPVAGLTDEETENIGDLLLALAESHSILVIEHDMEFVRQIARKVTVLHQGSVLCEGNIDQVQNDPKVIEVYLGQPMDDSHTAHSLELETSGSEL
>NC_019745.1|WP_015186975.1|554483_555239_-|urea-ABC-transporter-ATP-binding-subunit-UrtE
MSYTRDAIAPDPTSISQEHTLHVSNLNVYYGESHILRNVDLSVPVGQMVCLIGRNGVGKTTLLKTIMGLIRPRSGAIAFNGQIINSKTPDQRAKLGIGYVPQGREIIPRLTVKENLLLGLEARRHSKRTQEIPEQIFELFPVLNTMLSRMGGDLSGGQQQQLAIARALMGQPRLLVLDEPTEGIQPSIILEIEAAVRRIITTTGISVLLVEQHLHFVRQADRYYAMQKGGIVASGRTSELSQDVIQRFLAV
>NC_019745.1|WP_015186974.1|553738_553921_-|hypothetical-protein
MSLLDYFVVITLLLTVFPLAITQMKSAIAQEDIKSFSVWVFITCFLAGLPFMVMTVATAT
>NC_019745.1|WP_015186973.1|552395_553670_-|insulinase-family-protein
MTSTVLTPRLNAPTLHRLPNGLTIIAEQMPIEAVNLSLWVNVGSAVEADAINGMAHFLEHMVFKGTQRLCSGEFERLIEERGAVTNAATSQDYTHYYITTAPKDFAQLAPLQIDVVLNCTIPDDGFERERLVVLEEIRRSDDNPRRRTFQRAMETAFERLPYRRPVIGSAEVISRLTPQQMRDFHCTWYQPQSITAVAVGNLPAEELIEIVSEGFQVNTSRLTPHASHPPMTCESPFTEIVRQEYVDESLQQARLVMVWRVPGLMQIEQTYALDVVAAILGHGRTSRLVRELREEKSLVSQISVSNMTQQLQGTFYISAALPVENIPVVEAAIAQHIQSIQTQPVQESEIARIRTQVANRFIFGNETPSDRASLYGYYHSMLGDLEPAFDYPAKIQSVDATDILIAAQQHLSPNAYGVVILKPA
>NC_019745.1|WP_015186972.1|551517_552399_-|fructosamine-kinase-family-protein
MNWSEIAQHISKVTGKAFTVNRTRAVGGGCINQGYAISSETETYFVKLNSPSQVAMFEAEALGLQQMFATATIRVPQAICWGTVANACYLVLEWIELGRGNNSAWEEMGRKLAAMHKFDTMSSTNQAAFGWDRNNTIGSTPQINDWTTDWAEFFAKHRLGYQFKLANRRGGHFPQQQALLAAIPDLLAHQPQPSLVHGDLWGGNAACTTTGEPVIFDPATYIGDREVDIAMTELFGGFPAAFYHGYNAIFPLEQGYETRKIIYNLYHILNHYNLFGGSYSAQANRMIAQILSR
>NC_019745.1|WP_015186971.1|550489_551386_-|sugar-ABC-transporter-permease
MQKSVLARWGTIQHKLTPYLFLLPALLILGLTVFWPALQAFYLSFTRYEYDLTQPPQWIGWENFQRLWTDAVFWQTLGNTLLYLVCVVPVLAIAPLALAILVNQKLRGMHWFRAAYYTPVVISMVVAGIAWRWIYDGNGLLNQIIRQIGLSEKGIPWLTSPQWALFSVMAVTVWKGLGYYMVIYLAGLQAIPADLYEAAAIEGSDGIRKHWDITVPLMRPYIVLVAVISAISATKVFEEVYIMTQGGPRNSSKTIVYYLYEQAFRNLEMSYACTIGLVLFLGILGLSIINLKLTNQRV
>NC_019745.1|WP_015186970.1|545169_550398_+|DUF748-domain-containing-protein
MKNPPDLDNQTEQRSERSRSLLSYRTGIAIGAPLLLGLVAGGWWLWTFVNEQLAPLVERNLTQTLNRPVQLGRVESFSPTSLRFGASAIPATATDPDRAAVTAVDVTFNPLQLLITRTLRLDVTLVNPDVYLEQDAEGRWISTTLAAEEGTGPISTELDRIRFRNANVVLVPDPEARNEPIANKTTKASVTVSQGNGFAQFLDNNELIRYNISGNLATEGNIEIQGESQLSTERTNLQIQAQNVLASEVTRLIDLPIDLQGGRVDGNLNVQLRQAQEPALFGTAQLRKVTAQVEQLPQAFNNSSGTLGFQGTQIWLDNVQTSYGSIPAIANGVLDTEAGFNIAARVPTVSFANAQKTLELDLPVPVAGEARAEVQLSGPIQKPTLSGSVRTTKQARIDRVDFKKLSARFAFAPTESVIAFKDIQAVPTVGGQITGGGTLRIGDTPGLGFNLDARNIPGDAIARLYGAAPDFQIGTIQARANVVGSPTQPQTIVNWQAANATYPARGQILIANAQNLLFRNTTVDFAGGTLRAAGQLTNNQWQATVQASGVELGRVAEVPPALQAPISGTFNVAGTTASFQPDQIQATGSGRLNVAGGTVTASNIQLAQGRWQAQVQASGVQLGSLVPQVPPQFQGALTGTFNLAGATTAFQPETIVGTGSGRLNVAGGTVTAANIQLAQGRWQAQVNASQVELARFSEQLQGQLNGQLRVAGTVDSFDLADVRAVGNLRFSQGIGPVQQPLTATIGWVGDRIIVEQATAPNLNANGLILVQTASGVPEVTELDLNVQAQNYSLQDLPFELPAAGNLAGSADFTGNITGTLTAPNVVGALQLQNLAVNDLAFAPQLTGNVQLTATDGLQLDVSGGEDQITLNLDAQNRPVSFLVRRDAAVARGRSVGENLLVNIENFPLAALELTPDLPILGNAPISGQLTGDLTVNPTTFAVAGNIAIADPAIGTLTGNQFVGQVNFADGTGTLTGGEFIQGDGRYAFSGSVTQTPSGPEFEAQVNVANGQVQSVLTALRFFNLEDFQRGLEAPTYAGASTLNTTPVGIPDAPLLTQIRRYSEITTLLQQQRQQRQDASPLPALADFQGTFGGTVAVSGSLQAGVTANFDLQGQNWQWGDYNADQVIAQGNFEDGVLTLLPLRIQSDESLLAFTGQIGGTEQSGQLQVTNFPINTLTDFVDLPIDVTGQLNGSATLAGTVENPQAIGELELSAGTLNNRPVESATASFSYANARFNIGSNIVVTGPEPIVITGSIPLELPFASVTPDSDQISLDINVQNEGLALLNLLTDAVAWESGQGQVQLQVRGTTQEPVATGIATINDATITAQALPEPLTDVTGTINFNLDRIQVDSIQGNFSRGNVVAQGVIPIFSSFSPADPDFANPLTVNLNQLTLNLDGLYRGGASGNVIVTGSVLNPVIGGQVELAQGAISIPEENGNGSTPGTTTPTSASVPNFAANQEGTTNFELNNLQLTLGNGVEVTRPPIINLEATGSLNVSGTLNDLRPNGMIRLRRGGVNLFTTQFVLARGYEHTATFKPNQGLDPELDIRLVTRVPEVTRTRVATSPLSGDITQPLATDLGGFETVRVQAEVQGPASQLFDNLELTSNPSRSQSEIVALLGGSFIDTLGRGDSVLGLANLAGTALLGNFQGAVTNIGNAFGLSELRLFPTVGTESGGRTSALELAAEAGIDVSRNLSVSVLRVLTSDDPTRIGLNYRLNDQFRVRAATDITGETRAILEYENRF
>NC_019745.1|WP_015186981.1|560644_561319_-|cysteine-hydrolase
MVLIAAQPYDYELPSELQKVALLIIDMQRDFLEPGGFGEALGNDVRHLSAIIPTLKSLLEIFRKRQLPVFHTVEGHQPDLSDCPPSKLRRGNGQLKIGDPGPMGRILILGELGNAIIPELQPMTGEIVISKPGKGAFYQTSLESYLHKQGITHLIITGVTTEVCVQTTMREANDRGFECLLVEDATASYFPEFKESTLEMIRAQGGIVGWTATAANVMQAFGSI
>NC_019745.1|WP_015186982.1|561309_561657_-|anti-ECFsigma-factor,-ChrR
MKVLTLKNLFNIAAWHDDLPWEPFRPGVDIYRFYQDGEQGATAALLRYQPGAVVPKHEHVGFEHIFILSGSQSDRNGEHQTGTLVINPPGTSHTVTSETGCIVLAIWEKPVVLWS
>NC_019745.1|WP_015186984.1|561850_563419_-|ABC-transporter-ATP-binding-protein
MSGLTDAIEKQQTISEKLTLPPDLEVVNMTKRFGAMIALDNVSLHLKPGTFHALLGENGAGKSTLVKCIMGFYTPDKGDVLVDKRSRNISSPRDAHKYGIGMVYQHFTSVPAMTVAENLVLSRYGDRNVINWKNEYAQLKAFMQSAPFQVDLDTPVVQLAAGQKQKLEILKQLYLQSRILILDEPTSVLTPQEADEVLGLLRNEVQAGNLSVLMISHKFREVMAFVDEVTVLRKGKKAGHGLVKDLSLADLATMMLGERRETQQLDKITSVATTPVLELKNIHAHKDNGLAAVNGVNLTVRSGEIVGIAGVSGNGQRELVEVLAGQRPATAGQILVNGETYTATRAQMFRHRVFALPEEPLRNACVPHMSVAKNLALRTFDRPPQASFGWLLVLKAMREAAKSLVSSFSIKTPSVDAPVGNLSGGNVQRTVLARELSSSCINLLIAANPCFGLDFAAVEYIHTQIVAARNRGVAVLLVSEDLDELLTLADRIVVISEGKFVYESAIADADITTIGQRMAGHD
>NC_019745.1|WP_015186985.1|563434_564148_-|cysteine-hydrolase
MVHFVEADPYPYPFNGDLRPENTALLIIDMQTDFCGIGGYVDRMGYDLSLTRAPIEPIRKVLEVARAKGFHVIHTREGHRPDLSDLPENKRWRSQQIGAGIGDPGPCGKILVRGEPGWEIIPELAPLPGEVIIDKPGKGSFYATDLDLILNRKGIQNIILSGITTDVCVHTTMRDANDRGYECLLLSDCTGATDYGNYLAALKMIKMQGGVFGAVADSQAFIEAIAPMKVQTEVSVH
>NC_019745.1|WP_015186986.1|564181_565216_-|formamidase
MSGLGGLNKSPNGVVIGLVQLQLPNIVTPDDLTVQCDRICQMVAKARRNLPAMDLVVFPEYSLHGLSMDTNPEIMCRLDGPEVAAFQKACRDHRIWGCFSIVEYNPHGNPYNSGIIIDDTGELKLYYRKLHPWIPVEPWEPGNLGIPVCVGPNGSTIALIICHDGMFPEMARECAYKGAEIMIRTAGYTAPIRHSWQITNQANAFCNLMYTASVCMCGSDGTFDSMGEGMIVNFDGTPLVKGSDRPDEIITAEVRPDLVREARIHWGVENNIYQFGHRGYVAVKGGAQDCPYTYMQDLVNGCYRLPWEDAVIHKDGTACGFPPPTRTYEERGVRSEERGKVEKS
>NC_019745.1|WP_015186987.1|565288_565690_-|hypothetical-protein
MQHLLLAVNGTLMRGLELNPNLLAVNATFVREAKTAPVYRLWSINDKHPAMLRVASGGNAIALEIWQIPPSGLVQVLLQEPPGLCIGKVVLEDGSEVLGVLGEPILCENQREITSWGGWRNYIRDQRSEIGQD
>NC_019745.1|WP_015186988.1|565726_566647_-|ABC-transporter-permease
METQALGWWGVPLAIAAGTLRGSAPFLFVSLGECLTEKSGKINLGLEGTLLTGAMSAYAMSYLTGSPWLGVIMAGVAGMMLGVIHGWLSQQPRVNDVAVGIAMIIFGSGIAFFLGKPFIQPSAPPLPALPFGAWSSLPQVQSALQISPLFLIGVAIAPLMQWFFRATRWGLYIRAVGDSPDAAKAMGISIFKVRMLCIIVGSFLAGIGGAYLSLYYPGSWNERISGGQGLMAVALVIFARWQPMQCLYASLLFGGAQAIGPALQSVGIDSYYYLFNASPYILTLLIMILTCSPKRTLNGAPGALGQ
>NC_019745.1|WP_041918837.1|566665_567742_-|ABC-transporter-permease
MINRYNSRSIEALCIPLAALLFSLLLFGIFCAFAGADPFGVYASIYRSAFGSWRAFQNTLLRAAPLMLSSLCTALPARLGLVIIGNEGAIVVGGLGAVAAGLALSSAPPTVVQIAMAIASIVCGGLWIGAVGALRHYRGVNETISSLLLNYIAIALLNHLVGGPMRDPSSLNKPSSYPIAEINMLGDIPGTRVHYGLIYGLVACVIAYFLIQRTTFGFAARVAGGNIRAARIAGLPVGKLTMMICFLAGSCAGLAGMVEVAAVHGRANESLNANYGYSGILVAFIARHNPLAATLVAILLGGILASGGSLQRSHNLPDATVLVFQGLVFLVVLFSESLYGRFFKERSAVSGQGSAVTT
>NC_019745.1|WP_155823559.1|567825_569019_-|BMP-family-ABC-transporter-substrate-binding-protein
MLRRVRVSKRIYLSRRQVVRGLLATTAFGVTAKLGGCASTQETQANTAGGGDNPLVIGFIYVGPKDDYGYNQAHAEGAAGIAKLLGVRIVEEANVPETTAVEETMRNMIEEDGATILFPTSFGYYDPHILKIAQEYPEVQFFHCGGLYQDGVHPQNVGSYFGYIDEAQYVAGVVAGQTSKTGKLGFIAAKPIPQVLRNINSFTLGARSVKPEITTQVIFTGDWALPVKEAEAANSMADQGIDVITCHVDSPKVVMETAEKRGIFCSGYHANQAALAPKGYLTGAEWDWTQVYTNYVEMIRAGQTLMNGGIPHLVRGGLKDGFLKLSPYGTAVSADARQTADAAKAKFMDGSMIVYRGELKDNTGKVVIPAGKDFQQQDQELEKMNWLVTGVVGNVSS
>NC_019745.1|WP_015186991.1|569407_573031_+|NACHT-domain-containing-protein
MNSEEALAIVQTLAEEPLSKLQASVFRYAWEEQPYQEIAKQLGYEVGYLKQTGSQLWQVLSRAFGEKVSKSNVQLVLKRKARELTAECVGDSISNLKCDWGNAPDVSVFYGRNAELATLEQWIMRDRCRWVGLYGMGGIGKTCLAVKLAREIQSDFEYIIWRSLRNAPPILDLLADLIQFLSQQRETDLPNTLDSCILQLLQYLRAHRCLLILDNGETILRSPSTDEAYTQLFKSIAQTHHQSTLVLTSREKPNSIAVEEGENLPVRSLRLSGLNESAIKKIFDTKGFFTASHPEWKLLIEHYAGNPLALKIVAAGIQNFFDSSISNFLEVLPQGAIVFGDIRDLLASQINHLPELELHILYWLAINREPVTLSELKTDISSQIALGELLDAIAGLERKCLVDKVAPTLSENGKFTLQPVVMEYVTDRLIHQIYEEINHKTIHLFNSHALIKATTKDYIRETQKRLILQPITDKLINNNSKANLETKFQQILCNLRNKPQRVAGYAGGNILNILCYLQTDLSSWDFSQISIWQAYLCCSNLQQVNFTSAHFAKSVFTDTFSQVLSVAFSPDGKLLATGDVNHEIHVWQVTDGKQVLTCKVDAGWLWCVAFSPNGRHLASSANCTVNLWDVQTGECIKSFPGYTDRVFSVAFSPDGRMLASGSEDRLVRVWDIKTGELLHTFAGHTDEVRSVAFAPQHYAHSHHGGLLASGSFDGTVRVWNIDTGECLKLAEHQQKVWSVAFSPDGSIIASGSSDRTIKLWDVRTGTSIKTITAHSQQIRTVAFSGDGQTLASGSDDQSVRIWNYHTGEVLRVLKGHTSWISTVAFSPNHYLLASSSEDRSVRLWDSRNNFCLKTLQGHSNGVWCVAFSPDGTQLASGSQDRLIRLWDTTTGKHLGSLQGHTSWIWSVAFHPEGNVLASGSEDRTIRLWDTQTRQHLTTLKGHADAVFAVIFSPDGKTLFSGSLDGTIRLWNIQQQTCHPWQGHRGGVWSIALSLDGTLLASGSQDQTIKLWDVQTGCCIKTLSGHTSWIRACAISCDRQYLVSGSADGVIKVWQIETGQCIQTLQAHQGPVLSIVFDPSGENFATCGTDAVIKLWQWHPTCTISKTLHGHSKWVRFLAYNSDGLLASCSQDETIKLWNFNGDRNLTHKTLQVPRPYEGMNITDAQGLTEATMTTLKTLGAIDSNTLAGVREQGQQLVGVMLLSSTVS

Crispr_ID: NC_019745_2

• CRISPR_ID: NC_019745_2
• CRISPR_location: 1342475-1342599
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_2

Consensus_repeat	Method
TACAGAAACAAAATCTGTCTTCACCGGTTTCTTTAGCAC	CRISPRCasFinder

spacers of NC_019745_2

>2.1|1342514|47|NC_019745|CRISPRCasFinder
GAGATTCCGTTAACGACAAATCATTTGTTTGCGGTTAAAACCGCAGT

CRISPR arrays and Neighbor proteins around NC_019745_2

CRISPR arrays

The CRISPR arrays of NC_019745_2

>merge|NC_019745|2|1342475-1342599|CRISPRCasFinder
TACAGAAACAAAATCTGTCTTCACCGGTTTCTTTAGCACGAGATTCCGTTAACGACAAATCATTTGTTTGCGGTTAAAACCGCAGTTACAGAAACAAAACCTGTCTTCACCGGTTTCTTTAGCAC

>NC_019745|2|2|1342475-1342599|CRISPRCasFinder
TACAGAAACAAAATCTGTCTTCACCGGTTTCTTTAGCAC	GAGATTCCGTTAACGACAAATCATTTGTTTGCGGTTAAAACCGCAGT
TACAGAAACAAAACCTGTCTTCACCGGTTTCTTTAGCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_041918937.1|1347456_1348242_-|nickel-pincer-cofactor-biosynthesis-protein-LarB	unknown	unknown	gnl|CDD|224605
NC_019745.1|WP_015187662.1|1334585_1335647_-|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|224529
NC_019745.1|WP_015187661.1|1333649_1334495_-|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl|CDD|131194
NC_019745.1|WP_015187667.1|1338815_1339265_-|anti-sigma-regulatory-factor	unknown	unknown	gnl|CDD|225083
NC_019745.1|WP_015187668.1|1339703_1340357_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|368559
NC_019745.1|WP_015187675.1|1345416_1346034_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187672.1|1343726_1343936_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_051038494.1|1340475_1341870_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl|CDD|225174
NC_019745.1|WP_015187674.1|1344681_1345224_-|photosystem-II-oxygen-evolving-complex-protein-PsbP	unknown	unknown	gnl|CDD|366812
NC_019745.1|WP_015187676.1|1346156_1347032_-|nuclease-(SNase)	unknown	unknown	gnl|CDD|366169
NC_019745.1|WP_015187663.1|1336139_1336346_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187679.1|1348280_1350101_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173865
NC_019745.1|WP_015187680.1|1350218_1350941_+|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|368559
NC_019745.1|WP_015187677.1|1347128_1347440_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_041918525.1|1336542_1337934_-|asparagine--tRNA-ligase	unknown	unknown	gnl|CDD|235176
NC_019745.1|WP_015187670.1|1341958_1342444_+|allophycocyanin-alpha-B-subunit-apoprotein	unknown	unknown	gnl|CDD|381265
NC_019745.1|WP_015187665.1|1338057_1338399_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_041918526.1|1338507_1338795_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187671.1|1342739_1343468_-|phycocyanobilin:ferredoxin-oxidoreductase	unknown	unknown	gnl|CDD|179478
NC_019745.1|WP_015187673.1|1343932_1344523_-|septum-formation-inhibitor-Maf	unknown	unknown	gnl|CDD|178901

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_041918937.1|1347456_1348242_-|nickel-pincer-cofactor-biosynthesis-protein-LarB	gnl|CDD|224605	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only].	5.1808e-125
NC_019745.1|WP_015187662.1|1334585_1335647_-|sulfate-ABC-transporter-substrate-binding-protein	gnl|CDD|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.1273e-148
NC_019745.1|WP_015187661.1|1333649_1334495_-|sulfate-ABC-transporter-permease-subunit-CysT	gnl|CDD|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	2.30545e-132
NC_019745.1|WP_015187667.1|1338815_1339265_-|anti-sigma-regulatory-factor	gnl|CDD|225083	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].	8.32312e-26
NC_019745.1|WP_015187668.1|1339703_1340357_+|Uma2-family-endonuclease	gnl|CDD|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.30572e-19
NC_019745.1|WP_015187680.1|1350218_1350941_+|Uma2-family-endonuclease	gnl|CDD|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.7694e-30
NC_019745.1|WP_051038494.1|1340475_1341870_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl|CDD|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	4.97441e-167
NC_019745.1|WP_015187674.1|1344681_1345224_-|photosystem-II-oxygen-evolving-complex-protein-PsbP	gnl|CDD|366812	pfam01789, PsbP, PsbP. This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.	3.6844e-90
NC_019745.1|WP_015187676.1|1346156_1347032_-|nuclease-(SNase)	gnl|CDD|366169	pfam00565, SNase, Staphylococcal nuclease homolog. Present in all three domains of cellular life. Four copies in the transcriptional coactivator p100: these, however, appear to lack the active site residues of Staphylococcal nuclease. Positions 14 (Asp-21), 34 (Arg-35), 39 (Asp-40), 42 (Glu-43) and 110 (Arg-87) [SNase numbering in parentheses] are thought to be involved in substrate-binding and catalysis.	1.24366e-06
NC_019745.1|WP_015187679.1|1348280_1350101_-|ABC-transporter-substrate-binding-protein	gnl|CDD|173865	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_019745.1|WP_041918525.1|1336542_1337934_-|asparagine--tRNA-ligase	gnl|CDD|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NC_019745.1|WP_015187670.1|1341958_1342444_+|allophycocyanin-alpha-B-subunit-apoprotein	gnl|CDD|381265	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	7.86829e-108
NC_019745.1|WP_015187671.1|1342739_1343468_-|phycocyanobilin:ferredoxin-oxidoreductase	gnl|CDD|179478	PRK02816, PRK02816, phycocyanobilin:ferredoxin oxidoreductase; Validated.	5.53141e-158
NC_019745.1|WP_015187673.1|1343932_1344523_-|septum-formation-inhibitor-Maf	gnl|CDD|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	8.68114e-120

Protein sequences

>NC_019745.1|WP_015187670.1|1341958_1342444_+|allophycocyanin-alpha-B-subunit-apoprotein
MSIVSNVILKADDELRYPSSGELKNIKDFLQTGEQRMRIASTLAENEKKIVQQASKQLWQKRPDFIAPGGNAYGERQRALCLRDYGWYLRLITYGVLSGDKEPIEKIGLIGVREMYNSLGVPVPGMVESIRCLKEASLGLLSSEDAAEAAPYFDYIIQAMS
>NC_019745.1|WP_051038494.1|1340475_1341870_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MTELSNIDAQNQSKNLWRQGNLVEVVIHDLSDTGDGVGKFGDRVVFVPDTTPGDRALVRLTYTKPEFARAKLYELLESSPHRIRPSCIVADKCGGCQWQHISYKYQLEAKRNLVVQALQRIGGFEHPPVDSVLAAPSPLSYRNKATYPLGISATGQVQAGYFQKNSHQLINLNQCPIQDSRLNPLLREVKQDIQHQNWQIYDEKRHQGQIRHLALRIGRRTGEMLLTLVVKDWIPEMTTQAQKWLQRYPQLVGVAVNRNSDRTNAIFGQETRCIAGKDYLIEEFAGLQFQIRPETFFQVNTEVAEALLQQIAQQLNLQGHEVLLDAYCGIGTLTLPLAQQARQVIGLELQPTSVQQAQRNADLNHINNVTFQAGRVEKLLPQLEIVPDVVLLDPPRKGCDRTVIETLLQVQPSQIVYVSCKAATLARDLKLLCQTGIYHLVRVQPADFFPQTSHVECAAFLVSG
>NC_019745.1|WP_015187668.1|1339703_1340357_+|Uma2-family-endonuclease
MVTLQLSQIDISPGQRIVLRNVSWQQFENIVEELGEHRGSRVAYSQGTLEIMSPLPEHEVTKELVGDLVKILLEELEIDCESFGSTTFKRQDMERGVEPDESFYIANYAQMIGRSRIDLTVDPPPDLVIEIDITSKTQLEAYKALKVPELWRFENRQLRIDVLQNDQYIESSISPTFPELPIMALITEFVEQARLMGRSRALKAFRQRIQQWRRSSC
>NC_019745.1|WP_015187667.1|1338815_1339265_-|anti-sigma-regulatory-factor
MITISPRPVGRPWGTISFASTLYLCPILDLLLAEVPCKWQAELRLGLQEALVNAAKHGNNLDPSKLVIVKFKIEDDHYWWLISDEGGGFTPPCECNGNPHEYLPPEESENGRGLCILHEIFDRVHWNANGTELRLGKHFNNRFRLPLLH
>NC_019745.1|WP_041918526.1|1338507_1338795_+|hypothetical-protein
MLQADQDKKTSDIQNLSTLELAQALMEKLAISPQDWHRLKSNRKVRASEQAAAAIVFLLKDQPEEALQRLNQASGWLDRSISAPPCPTHGHTSKG
>NC_019745.1|WP_015187665.1|1338057_1338399_-|hypothetical-protein
MAQSSQEPLFSEIERSLAEVERSLVALKQRYTQVQIDLQRQANLHQRQKELVKTKNAEFQAELKRIQAELDEIEVNLESQLFSWGSLKEPFWQAVRFGGLGMLIGWMLKSCTS
>NC_019745.1|WP_041918525.1|1336542_1337934_-|asparagine--tRNA-ligase
MMKRRIIDILRQGQPDESVTIQGWVRTKRDLKGFAFIEVNDGSSLANLQVVLNAELPEYESLLKQANTGSSVEVTGKLVASQGKGQRIEVQAQSVKVYGEADPETYPLQKKRHSFEFLRTIGHLRSRTNSLGAVFRVRNACATAVHQFFQERRFLWVHTPIITRNDCEGAGELFTVTGFDLKDIPRTETQEVDFSQDFFGGKAYLTVSGQLEAEVMAMAFSNVYTFGPTFRAENSNTSRHLAEFWMIEPEMAFCDLQGNMDLAEAFLKQIFKYVLETCPEDMEFFNQRIDNSVIATAENIIHNEFERITYTEAIALLEKADAQFEYPVKWGLDLQSEHERYLAEQLFKKPVIVSDYPVEIKAFYMRLNDDEKTVAAMDILAPKIGEIVGGSQREERLDVLERRIQAQGMNPADLWWYLDLRRYGTVPHAGFGLGFERLVQFMTGMSNIRDVIPFPRSPLSAEF
>NC_019745.1|WP_015187663.1|1336139_1336346_-|hypothetical-protein
MKPDFKAMLLAELRDYVKEHRNDDEAIYELFVNRRNPNAKKYPAPLDEAGIKIMEEAFRRKIQGEPEP
>NC_019745.1|WP_015187662.1|1334585_1335647_-|sulfate-ABC-transporter-substrate-binding-protein
MGLWRNILGLRASWKKFVSLFLVGVGLSVAIASCAPSSAQNRDVEITLVSYAVTKAAYKEIIPQFTAMWKQQHNQNVMFNESYGGSGAQTRAVVDGLDADVVALALALDMKKVEKAGLIQPGWENEAPNNAIVHKSVAAIVTREGNPQAIQTWSDLTKNNVRVVTANPKTSGGARWNFLALWGAIKETGGSDEQALNFTREVYQNAPVLPRDAREASDVFFNQEEGDALINYENEVILAAQRGEKLPYVVPKVNISIDNPIAVVDRNVDRHGNREVAEAFVQFLFTPTAQREFAKVGFRPVDPTVEQEFANKYPKIETLFTVQDLGGWNTVQQQFFEDGAEFDKIQASIARAR
>NC_019745.1|WP_015187661.1|1333649_1334495_-|sulfate-ABC-transporter-permease-subunit-CysT
MAVSSTRPVPVRNNPQFHLSWPWRITITYMTFMLLFPVAALFLRAATVSPAEFWQIATSPVALSAYDVTFVTAIIAASVNAVFGTLIAWVLVRYDFPLKRFIDAAIDLPFALPTAVAGLTLVSVYSETGWIGSLLAPLGIRVAFTRLGVGVAMLFISLPFVVRSLQPVLQELDIDVEEAAWSLGASRIQTFWRVVLPPLLPALLTGVALGFSRAVGEYGSIVIIASNIAFKDLIASVLIFQRLEQYDYAGATVIGTVLLLISLLILVGINLLQAWRRRYEV
>NC_019745.1|WP_015187671.1|1342739_1343468_-|phycocyanobilin:ferredoxin-oxidoreductase
MTSTTYSLRSQQHPLIRQLADTIESTWRRLELSPYQLPQEFGYVEGRLEGEKLTIENRCYQTPQFRKMHLELAKVGTTLDILHCVMFPRPEYNLPMFGCDLVGGRGQISAAIADLSPVADGNLPDTYSQALAALPAVEFSQPRELPEWGHIFSKFCLFIRPNGEVEEAKFLQQVQNYLEIHVTQAIAAQPVSAAQQAQILAGQRHYCTQQQQNDKTRRVLEKAFGKEWAERYMTTVLFDYVE
>NC_019745.1|WP_015187672.1|1343726_1343936_+|hypothetical-protein
MKLDVRKIRNEQSQWSIKPFLNQVKPEFTANSWVQLRELLCQLSSDEWVAWVPQCGETILHAHQFYALY
>NC_019745.1|WP_015187673.1|1343932_1344523_-|septum-formation-inhibitor-Maf
MQFILASASPARRRLLQSVGIDPIVSPSNFDESQIQERDPRLLVKTLARSKAETVAPEFDSGLIMGCDSVLLINGEIHGKPTNTEEAIARWQKMRGNVGELYTGHALIDLHLHQHHTLVRCQVTRVYFASASDRQIEAYVATGEPLKCAGGFALEGKGGLFVEKLEGCHTNVIGLSLPLLRQMLSDLGYDIVDFWH
>NC_019745.1|WP_015187674.1|1344681_1345224_-|photosystem-II-oxygen-evolving-complex-protein-PsbP
MLRRILVILLITFSVSLTSCSSAVSGLKSYVDSTDGYEFLYPNGWVPVNVSNGPDVVLHDLIETTENVSVVISDVPQGKTLADLGSPSEVGYKLGKSAIAPPESGREAELVNAEELATDAKTYYLLEYTVKLPNQQQRHNIASVAVSRGKLFTFNASTPERRWTKVKPTLDAVVKSFTVY
>NC_019745.1|WP_015187675.1|1345416_1346034_+|hypothetical-protein
MLTTAELRWFYPGKLPQHVCQWFEQDQLGYLAPAEKREDIYLYVPESDFVGIKLRQGRLEIKWRKAELGDLQFGKTTGKAEKWAKWLCEDANNESFQPQEVIGKKAWVSINKVRTQRKYQLSARQEVIAIEINDSSSDRTCNVEITELEVNRNPWWSLAFEASIDDESPLENLKCVAEWIFKTYPGELESENSYAYPTWLDIVLK
>NC_019745.1|WP_015187676.1|1346156_1347032_-|nuclease-(SNase)
MSAPFYRVIKGKFVIKGKEPDGDSVRFIADHPDLYEELHRSYRIEPSRDRSVQLRFEGIDAPEVHYGKDAQILGDKTRDRLLDWMGFKNIVFAGNRVESANPDSIPGAILSKAADANGRPVSYIFLEEDAKQLDDADWIRVEEKQLKKTINYQMLLEGNAYYTVYTSTPLIHRELLRKAATKAKTDKLSIWAEDVTNQFELEDKTSITAPNGQLILPKLFRRSIDYLKAVDKGFEGNLKDWLISISSGSRNENDRVVVGNNMELKLSDLIKQRNNKIVFQADLLDITFVEK
>NC_019745.1|WP_015187677.1|1347128_1347440_-|hypothetical-protein
MRQPVTSVAIILSIILVFVSVYLPTTVLSQAELAGVKFGLPFSFIVQSQAYHPPFFPWQTSISSIWEHPIQIYFHVFFIDVVIVCLGSLFLSKLLQVIAIKLR
>NC_019745.1|WP_041918937.1|1347456_1348242_-|nickel-pincer-cofactor-biosynthesis-protein-LarB
MTQPEVLRSLLESVAAGEVNPVEAFDKLKHLNYEPVGDFARIDHHRRLRTGFPEVIWGPGKTPDQIAQIMHAMRDRGSVVMATRIEPEVYAQLQEKVPDLYYYAMARICAITTAIEPQCPGVISILSAGTADLPVAEEAAVTAELSGFRVHRLWDVGVAGIHRLLNNRHVVESADVLIVVAGMEGALPSVVAGLADCPVIAVPTSIGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRAAHKLHLSQSSD
>NC_019745.1|WP_015187679.1|1348280_1350101_-|ABC-transporter-substrate-binding-protein
MLTANIFSRLTFRRLSLLLNVVFFIVFQFILTGCQPQILQAETARSQWVVSTLSDPKTFNYAFNQEFPHVFLFTAEGLTSLNAMTTEIEPALAESWEISNDQKRIVFTLRENLKWSDGKPLTADDVVFTYRDIIANPAIPTDWKDSFKVGKSGTFPQVNKIDDRRVEFLLPEPFAPFLSATTGGATNQVGILPKHALYKSLTTKDSEGKPQFLSMWGTNTDPSQIIVNGPYKIASYTPGQRVIFQRNPYYWRKDSQGNQLPYIERVVWQIIESTDTAILQFRSRGLDSVEVSPENFSLLKREEKRGRFTVYNGGPRFTQTFISFNLNKGRRQNGTVVDPIKSRWFNTLEFRQAIAYAIDRQTMLNNTFRGVGTIQNSPIFPQSPYYLSPEEGLKTYEYDQDQARNLLLKAGFKYNPKGQLLDADGNRVRFSLITNAENRTRVAMGAQIRQDLSRIGIQVDFNPINFNTLVDRLSNSLDWECHLLGFVSGTVEPHDGANIWLPDGGLHTFNQKPLAGQEPLVGWEIADWEAEIGRLYIQGSQEFDEARREEIYAETQRIAQEYLPFIYLVNPLSIAAIRDRIQGVKYSALGSLSGTLWNKYELKVTE
>NC_019745.1|WP_015187680.1|1350218_1350941_+|Uma2-family-endonuclease
MVLNQSPKKQQPDAQNEYKSIPPLESGDRLSRHEFERRYTAIPDIKKAELIEGVVYVASPLRFTNHAEPHSHLIGWMWTYRTATPGVRLGDNATVRLDLDNEPQPDGVLFIDSTAGGQAQLSDDDYIEGAPELIVEIAASSAAYDLHDKKNAYRRNGVPEYIVWQIYENKLEWFELSEGEYRQLEPDSEGIVRSRVFPGLWLAVAALLEGKMTQVLAVLQQGLNSPEHAEFVQHLAKFSS

Crispr_ID: NC_019745_3

• CRISPR_ID: NC_019745_3
• CRISPR_location: 1535975-1536088
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_3

Consensus_repeat	Method
ATCAAATATTAAAGAAACCCACGCCGGTGGGTTTTGTCT	CRISPRCasFinder

spacers of NC_019745_3

>3.1|1536014|36|NC_019745|CRISPRCasFinder
ATATCGCCGCGAATTTATTCGCCCCTCCATGAGGAA

CRISPR arrays and Neighbor proteins around NC_019745_3

CRISPR arrays

The CRISPR arrays of NC_019745_3

>merge|NC_019745|3|1535975-1536088|CRISPRCasFinder
ATCAAATATTAAAGAAACCCACGCCGGTGGGTTTTGTCTATATCGCCGCGAATTTATTCGCCCCTCCATGAGGAAATCAAATATTAGAGAAACCCACGCCGGTGGGTTTTGTCT

>NC_019745|3|3|1535975-1536088|CRISPRCasFinder
ATCAAATATTAAAGAAACCCACGCCGGTGGGTTTTGTCT	ATATCGCCGCGAATTTATTCGCCCCTCCATGAGGAA
ATCAAATATTAGAGAAACCCACGCCGGTGGGTTTTGTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015187842.1|1544387_1544618_+|DUF2281-domain-containing-protein	unknown	unknown	gnl|CDD|378366
NC_019745.1|WP_015187832.1|1535003_1535888_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NC_019745.1|WP_015187828.1|1531616_1531919_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187841.1|1543698_1544232_+|PIN-domain-containing-protein	unknown	unknown	gnl|CDD|379205
NC_019745.1|WP_015187826.1|1528944_1529280_+|c-type-cytochrome	unknown	unknown	gnl|CDD|184253
NC_019745.1|WP_015187830.1|1533445_1533718_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187825.1|1528177_1528597_-|transcriptional-regulator	unknown	unknown	gnl|CDD|226207
NC_019745.1|WP_015187827.1|1529475_1531572_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657
NC_019745.1|WP_015187824.1|1527338_1528178_-|M56-family-metallopeptidase	unknown	unknown	gnl|CDD|320685
NC_019745.1|WP_015187833.1|1536210_1537581_-|thioredoxin-disulfide-reductase	unknown	unknown	gnl|CDD|273540
NC_019745.1|WP_015187835.1|1538881_1540198_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|316372
NC_019745.1|WP_015187829.1|1532396_1533371_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187823.1|1526277_1527168_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|223687
NC_019745.1|WP_015187838.1|1542247_1542475_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187831.1|1533714_1534971_-|inorganic-phosphate-transporter	unknown	unknown	gnl|CDD|376541
NC_019745.1|WP_015187836.1|1540422_1540923_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl|CDD|374761
NC_019745.1|WP_015187840.1|1543477_1543699_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187834.1|1537683_1538256_-|Uma2-family-endonuclease	unknown	unknown	gnl|CDD|368559
NC_019745.1|WP_015187837.1|1541275_1541566_+|nucleotidyltransferase	unknown	unknown	gnl|CDD|224583
NC_019745.1|WP_015187839.1|1543008_1543251_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015187842.1|1544387_1544618_+|DUF2281-domain-containing-protein	gnl|CDD|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	3.45838e-06
NC_019745.1|WP_015187832.1|1535003_1535888_-|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.27318e-79
NC_019745.1|WP_015187841.1|1543698_1544232_+|PIN-domain-containing-protein	gnl|CDD|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	2.05367e-11
NC_019745.1|WP_015187826.1|1528944_1529280_+|c-type-cytochrome	gnl|CDD|184253	PRK13697, PRK13697, cytochrome c6; Provisional.	4.06961e-53
NC_019745.1|WP_015187835.1|1538881_1540198_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	1.45033e-29
NC_019745.1|WP_015187825.1|1528177_1528597_-|transcriptional-regulator	gnl|CDD|226207	COG3682, COG3682, Predicted transcriptional regulator [Transcription].	3.77511e-41
NC_019745.1|WP_015187827.1|1529475_1531572_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.21815e-62
NC_019745.1|WP_015187824.1|1527338_1528178_-|M56-family-metallopeptidase	gnl|CDD|320685	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	4.9611e-34
NC_019745.1|WP_015187833.1|1536210_1537581_-|thioredoxin-disulfide-reductase	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	2.86514e-155
NC_019745.1|WP_015187823.1|1526277_1527168_+|ABC-transporter-substrate-binding-protein	gnl|CDD|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.67378e-39
NC_019745.1|WP_015187831.1|1533714_1534971_-|inorganic-phosphate-transporter	gnl|CDD|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	3.59387e-51
NC_019745.1|WP_015187836.1|1540422_1540923_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl|CDD|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	7.76825e-33
NC_019745.1|WP_015187834.1|1537683_1538256_-|Uma2-family-endonuclease	gnl|CDD|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.27873e-47
NC_019745.1|WP_015187837.1|1541275_1541566_+|nucleotidyltransferase	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	9.66457e-25

Protein sequences

>NC_019745.1|WP_015187832.1|1535003_1535888_-|ABC-transporter-permease
MTLTKRQLPLLFRVSGSSSVSMQLMRIGFIITLIFVLIAILAPVFQAWGWIQNPLESLNNPSHVPPSAQYWFGTNREGYDVFSRTLYGTQVALQVVVLATVLSLAIGVPLGLVSGYLGGSLDRVLLFLMDTIYTLPGLLLSITLAFVVGRGILNAAIAISISYIPQYYRVVRNHTVSVKTELFIEAAQAMGASPWRVISRYLFLNVIQSVPVLFTLNAADAILTLGSLGFLGQGLPPRVPEWGHDLRQALQALPTGIWWTAFFPGMALTLLVVGLSLLGEGLSEFINPRWRKQR
>NC_019745.1|WP_015187831.1|1533714_1534971_-|inorganic-phosphate-transporter
MLQLGLTALLAFYVAWNLGANDVANAMGTSVGSKAVTLRQALIIAGVLEFTGAVLFGHEVSETLATEIVNPELFAAEPQVLLIGMFSVLLAAGLWLQIATSRGFPVSSSHAVVGAIAGFSWVAAGVQAIDWSLIRTISLAWVVTPLVSGAIAALFYRIIKHSILDRQDSIQQLNEWIPWLSVALLSVFGIIVLPKLSQPINTFFYEQLHWNIPKHDLPIGIGAIAAVSLAMVSWRQLDQNIVRKSLSPTQNIVEKQLAKFQLLSACFVAFAHGSNDVGNAIAPLAAINYISLTGTVPLNGITIPLWILVLGGAGIVTGLAIWGKKVIATIGEGIIPLQPSAGFCAELATATTILLASRVGIPVSTSHALVGGVVGIGLVQGNKSIQFKTVRGIIMAWLITVPAGALLGAIVFAIARNF
>NC_019745.1|WP_015187830.1|1533445_1533718_+|hypothetical-protein
MRSPQEHFSDLEAILKRHAEALEAEIRALQQSDETAQWSSAWKQVYNWNFAKAFARQKVFRNWAADAAAWKLLPQRNYPNQGNRQADFGD
>NC_019745.1|WP_015187829.1|1532396_1533371_+|hypothetical-protein
MPILEIQRAEKIHDYIQKLEKLTNIPLRSSPILLSSPRQQVSLELPSEGIKQSYEYVEQLYEDVGEHEIVFKAIKTGWEYLNSGYKIVPTSKEEYFKQINEAYVFQAARERGYTVSEDYFKEHKFCYGQYETYYAVHEIMQRNAFDFLLSKSYSPNFIHTYANWHKCIKLISSQFIIPATTIDKKIPHILDQLWIISHNINQLRLLGIEIVGEGKFLSRTQPRTTVTNDFLNQLGYEIYQVASWWCRVDPYRVICEFLKASGIFPDATKYLIGSELNTIDEYVCGICHAPMVRWGWDWIQRYQIGNSTVLAHKDCVMRKQHSSR
>NC_019745.1|WP_015187828.1|1531616_1531919_+|hypothetical-protein
MRARIENMVLFLHHEDVPSFKKGGSVVRNSYFWALRSIAGQASRYRDWEYESEVWFALCRMLLSFSESGYLGLKETTLEFPLSQGEIPQVLRPIATWEAD
>NC_019745.1|WP_015187827.1|1529475_1531572_+|TonB-dependent-receptor
MKLSFSLFWVVLLNLTFTNALSAIAEEAPQNSNPAEAKETLLKRLRQYQSSIPQLSEVKQPYTSAELLTQQSTNQIDPVIVDDEILIEVEGERDIFPATSTPIYEITEEEIQKQRPNSLAEVLRNLPGFAINDVGFGADIHTGTFYRGSSINQSVFLLNGRPINTNISTYHGGFDLNSIPVDAIERVELSSGTSSTLYGSEAFGGVVNIITKQGPEIPQFNGLAEFGSYDRSNYRASYGGTFGSLRLNFGYEEFSAENRYPVPEGAANRDAEGLLFNGDTATSNYYGSAILDLDANNTLSLDAYKISSRRGLLYFGFPLQRDRLDHDVLNIGLSLRSLLGGSEDSILRTTLSYNQDYFSTYGPTQNIFYRQGILDSQSIAARVEHEWQFNPTNNLRWGLDLRNRYLNGDVFSTAPNRIDLNETEYRERFEGALFALNTWSINQTLQAELGFRQNFTSEYGSYFNPSVGLRWAASPNVALRGSWVSVQRNPGLDQLYVYDTVHNWLPNPDLEPETGSSWTAGVDVRFAANLTGQFTYFGSSLSDRLGIQFGRWANIGLVNTNGLEAALRWQIAPQWSTFLNYTYTDAKIASGIEQGLQLGFVPYSVAQLGIGYQSQGWQVNLFASYFSGSRRAFFNNPGESNTDFSPSWLNLDLGVRVPLFSNLALTLFVENLADVAYEKSNRIYQPGRTYRIGITSDF
>NC_019745.1|WP_015187826.1|1528944_1529280_+|c-type-cytochrome
MKKILTAILLSLAIASLAFVRPVLAADTASGAKIFSTNCAACHMGGRNVVVAQKTLKQDALEKYSMNSIEAIIHQVQNGKNAMPAFKGRLSDQQIEDVAAYVLEQAAKGWT
>NC_019745.1|WP_015187825.1|1528177_1528597_-|transcriptional-regulator
MSPLPDYSPKQLSLGPLEAEILDIIWELGSVTVKDVHDRILADPNRELAYTSVTTVLRRLTEKGWLACDKKAKAFYWRPLVTKQQAQVIKAHDQLHRFLAVGNPEVVAAFADSLDQTSLEKLQAIAQRIQAARQAREEK
>NC_019745.1|WP_015187824.1|1527338_1528178_-|M56-family-metallopeptidase
MHLLIILVALGVAWSLRQHLPILKTGWQQRFERTLFLFLFPPLLLFMTAIAVLCMGPQGQMVGLQAGWFSYILAAAWLGIAALLCLKLGWQGWQAVCRARECPKIHFEAKDIRVLDTEALFAAQIGFWQPELVVSQGLLQISREHLHSVLTHEQAHYYYRDTFWFFWLSWIRDCTAWLPNTDALWQELLILRELRADCWAAQQVDPLLLAESLLMVVSDRTLEPDIFCAALASYQVGDRLEQRIDALLSPQQDIAKPNLQSWSWFVFACLPLFTVVLHS
>NC_019745.1|WP_015187823.1|1526277_1527168_+|ABC-transporter-substrate-binding-protein
MYQRLIMSFIALLIVLVAGCNSTQQVSSSTAVDSSAAVTPQQSVTRVVALSSLTADIIYQLDATKLVGIPGSRLLRNDTRFKDMTRVSEGRVPPNLEKIVALKPNLVVGAAGFAEQTTQKLKELGIPVFLTTVDSWESLNETTKSLAQLIDADPQPLLNRYQTFLANKPNQSPSTLVLVSRQPILTPNKSSWAGDLLNQFQANNLAAQLQGKSSFGGYITLSPEKILEANPDVLLVVDTEPGVAEFFKSQSFWKQLNAAKNNRVYTFDYYGLVNPGSIDAIEKTCEQLRQALSETV
>NC_019745.1|WP_015187833.1|1536210_1537581_-|thioredoxin-disulfide-reductase
MTNPTVENLVIIGSGPAGYTAAIYAARANLKPIVFEGFQAGGLPGGQLMTTTEVENFPGFPEGITGPNLMDRMKAQAERWGAELYTEDVTYVDLSQRPFTVRSDEREFKTHSVIIATGATAKRLGLPCEGEFWSRGISACAICDGATPIFHGAELAVVGGGDSAAEESIYLTKYGSQVHMLVRSDKMRASKAMQDRVLSNPKIQVHWNTEPIDVFGNDNHMEGVKLRNTQTGEESKIHAKGLFYAIGHKPNTSLFQGQIELDDIGYVITKPDSPETSVEGVFAAGDVQDHEYRQAITAAGSGCMAAMLAERWLSSNGLIQEFHQAGENLHLDNELVHEAVKTEQNGEFDVSATRHEGGYALRKLFHDSDRLMMVKYVAPGCGPCHTLKPILNKVVDEFDGKIHFVEIDIDKERDIAETAGVTGTPTIQLFKDQELLMEVKGIKQKSYYRQLIEANL
>NC_019745.1|WP_015187834.1|1537683_1538256_-|Uma2-family-endonuclease
MTAITLNLHSVVDLTDEQFYQLCQTNPDLKLERTATGEIVMTPPTGWGTGKKNTQLTKQLAIWADRNQTGVAFDASTGFKLPNGANRSPDAAWVKQERIDTLNADPDTFLPLAPDFVVELMSASDNIETTQAKMQEYCDNGVRLGWLIDSKNQRVEIYRQGQPVEILNSPVSLSGEDVLPGFVLDLQNIL
>NC_019745.1|WP_015187835.1|1538881_1540198_+|class-I-SAM-dependent-methyltransferase
MNQILTEISEKIRQQFDTGPYPRIALEKSPKNDAMALYIHSLVNAYYLRNQKVISTEGKLILDAGCGSGYKSLILAEANPGAKIVGVDISANSIELAKQRLQYHGFDNAQFHVCRIEDLPSLGLQFDYINCDDVLYLLSEPAIGLQAMKSVLKPDGIIRANLHSSLQRTYYYRAQEVFKMMGLMDENPEELEIDLVRDTMNALKDQVKLKALTWSPQLEADPERILMNLLFQGDKGYTIPETFAAIRKAELEFISMVNWRQWNLMELFKEPDDLPVFLAMSLPEISIEEQLTLFELLHPVHRLLDFWCGHPQQEQDFVLVADWTLSEWETTRIHLVPQLRTPEIKQELLKSVSQLNTFEISQYLPIVEKHVSIDSTVAACLLPLWEAPQSMRSLVAHWQKIRPVNLATLEPFSANEALEVLSNALIGLESRGYILVER
>NC_019745.1|WP_015187836.1|1540422_1540923_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MNTQLKAKFLYRRDRKHEEGFTLIEMLVVIIIIGILSATAMPSFLNQAAKTRQSEAKNSTGALNRAQQAYYLENQVFADDVNKLSVGVVNSVSYNYVVSGNDFINQVANLATAQQADLKSYAGGVFKSANNLTTVAILCEANSAGNAPINAPTSASACANGSQRMQ
>NC_019745.1|WP_015187837.1|1541275_1541566_+|nucleotidyltransferase
MGIRELLDQQRSEILRIAAQHGAYNVRVFGSVARGEAQPDSDIDLLVELESSRSLLDRVALMQDLEDLLGIKVEVATEKGLQASIRDRILSEALPL
>NC_019745.1|WP_015187838.1|1542247_1542475_+|hypothetical-protein
MNTLAQVLETASQLPREQQEMLINILQNRLNESRRIEIATDAQQTLMEFRAGRFPHQSAEDAIIVLRECLHEPEA
>NC_019745.1|WP_015187839.1|1543008_1543251_-|hypothetical-protein
MTELLRRAIAQIEKLPDEQQDAIALKLLNELEDEQAWKTRFEATTDQQWDRLAATIRQEIANGETVPLDDIFPSTPITAH
>NC_019745.1|WP_015187840.1|1543477_1543699_+|hypothetical-protein
MTLPELQKQALQLPVSDRWQLVQALLESLKREAHPKLKQRNLSRLRGIAKSSTNTGETDPQEEYVTYLTEKYQ
>NC_019745.1|WP_015187841.1|1543698_1544232_+|PIN-domain-containing-protein
MRILIDINVVLDFLQEREPFVENAAILFERIDTGDIEGFIAATTITNIYYIVRRAAGKVVAQDAITQVLSDLNICTVDLEVLEQALALNFQDFEDAVQYVCAVMHNVDAIVTRDPSGFVKAEIPVILPEELDTISRGERRNQSNILYSRRGVLPRSHHHDYLRDRLEALQYMRSRLA
>NC_019745.1|WP_015187842.1|1544387_1544618_+|DUF2281-domain-containing-protein
MSIEQTVIEKLKTLPVEKQQEVLDFVEFLQSKRLENSSHQERVPASVFTLAQQYIGCVEGAEDLSTNKKYMEGYGA

Crispr_ID: NC_019745_4

• CRISPR_ID: NC_019745_4
• CRISPR_location: 1666998-1667074
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_4

Consensus_repeat	Method
AACTCCGCTTCTAAGCGCGCGAT	CRISPRCasFinder

spacers of NC_019745_4

>4.1|1667021|31|NC_019745|CRISPRCasFinder
CGTGGCTTGTTGTGCTGGTATTTCTCCTTGT

CRISPR arrays and Neighbor proteins around NC_019745_4

CRISPR arrays

The CRISPR arrays of NC_019745_4

>merge|NC_019745|4|1666998-1667074|CRISPRCasFinder
AACTCCGCTTCTAAGCGCGCGATCGTGGCTTGTTGTGCTGGTATTTCTCCTTGTAACTCAGCTTCTAAGCGCGCGAT

>NC_019745|4|4|1666998-1667074|CRISPRCasFinder
AACTCCGCTTCTAAGCGCGCGAT	CGTGGCTTGTTGTGCTGGTATTTCTCCTTGT
AACTCAGCTTCTAAGCGCGCGAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015187930.1|1656627_1658652_+|ribonuclease-E/G	unknown	unknown	gnl|CDD|273254
NC_019745.1|WP_015187947.1|1688300_1689425_+|sulfotransferase	unknown	unknown	gnl|CDD|379204
NC_019745.1|WP_015187935.1|1665058_1666231_-|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|130253
NC_019745.1|WP_015187944.1|1684380_1684677_+|acyl-carrier-protein	unknown	unknown	gnl|CDD|376348
NC_019745.1|WP_015187933.1|1660205_1664171_+|magnesium-chelatase-subunit-H	unknown	unknown	gnl|CDD|215643
NC_019745.1|WP_041918994.1|1681080_1682739_+|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein	unknown	unknown	gnl|CDD|240093
NC_019745.1|WP_015187945.1|1684711_1686541_+|hypothetical-protein	unknown	unknown	gnl|CDD|375989
NC_019745.1|WP_015187946.1|1686613_1688245_+|cyclic-peptide-export-ABC-transporter	unknown	unknown	gnl|CDD|130262
NC_019745.1|WP_041918542.1|1652882_1653272_+|STAS-domain-containing-protein	unknown	unknown	gnl|CDD|132914
NC_019745.1|WP_015187937.1|1668626_1669958_+|chromosome-partitioning-protein-ParB	unknown	unknown	gnl|CDD|319266
NC_019745.1|WP_015187943.1|1682747_1684268_+|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|225857
NC_019745.1|WP_015187927.1|1652139_1652334_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187941.1|1677784_1681045_+|type-I-polyketide-synthase	unknown	unknown	gnl|CDD|225858
NC_019745.1|WP_015187932.1|1659334_1659904_-|DUF1997-domain-containing-protein	unknown	unknown	gnl|CDD|370453
NC_019745.1|WP_015187931.1|1658700_1659354_+|ribonuclease-HII	unknown	unknown	gnl|CDD|184399
NC_019745.1|WP_015187934.1|1664322_1665012_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|274374
NC_019745.1|WP_155823610.1|1670281_1670431_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187938.1|1670622_1670901_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187926.1|1651682_1652069_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015187929.1|1653373_1655989_+|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl|CDD|188475

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015187930.1|1656627_1658652_+|ribonuclease-E/G	gnl|CDD|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	2.38832e-175
NC_019745.1|WP_015187947.1|1688300_1689425_+|sulfotransferase	gnl|CDD|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	5.48949e-31
NC_019745.1|WP_015187935.1|1665058_1666231_-|FtsX-like-permease-family-protein	gnl|CDD|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	4.54247e-146
NC_019745.1|WP_015187944.1|1684380_1684677_+|acyl-carrier-protein	gnl|CDD|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	3.80189e-12
NC_019745.1|WP_015187933.1|1660205_1664171_+|magnesium-chelatase-subunit-H	gnl|CDD|215643	PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.	0
NC_019745.1|WP_015187945.1|1684711_1686541_+|hypothetical-protein	gnl|CDD|375989	pfam18563, TubC_N, TubC N-terminal docking domain. This is the N-terminal docking domain found in TubC proteins from the tubulysin polyketide synthase and nonribosomal polypeptide synthetase (PKS-NRPS) system, which binds to C-terminal docking domain of TubB.	1.0845e-16
NC_019745.1|WP_015187946.1|1686613_1688245_+|cyclic-peptide-export-ABC-transporter	gnl|CDD|130262	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other].	6.16249e-145
NC_019745.1|WP_041918542.1|1652882_1653272_+|STAS-domain-containing-protein	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.31903e-19
NC_019745.1|WP_015187937.1|1668626_1669958_+|chromosome-partitioning-protein-ParB	gnl|CDD|319266	cd16409, ParB_N_like, ParB N-terminal-like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	6.97829e-21
NC_019745.1|WP_015187943.1|1682747_1684268_+|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|225857	COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.59979e-132
NC_019745.1|WP_015187941.1|1677784_1681045_+|type-I-polyketide-synthase	gnl|CDD|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.18305e-122
NC_019745.1|WP_015187932.1|1659334_1659904_-|DUF1997-domain-containing-protein	gnl|CDD|370453	pfam09366, DUF1997, Protein of unknown function (DUF1997). This family of proteins are functionally uncharacterized.	6.3086e-75
NC_019745.1|WP_015187931.1|1658700_1659354_+|ribonuclease-HII	gnl|CDD|184399	PRK13925, rnhB, ribonuclease HII; Provisional.	1.48638e-103
NC_019745.1|WP_015187934.1|1664322_1665012_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	6.8309e-140
NC_019745.1|WP_041918994.1|1681080_1682739_+|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein	gnl|CDD|240093	cd04742, NPD_FabD, 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	0
NC_019745.1|WP_015187929.1|1653373_1655989_+|TIGR03960-family-B12-binding-radical-SAM-protein	gnl|CDD|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0

Protein sequences

>NC_019745.1|WP_015187935.1|1665058_1666231_-|FtsX-like-permease-family-protein
MLLKIPLAWLQLARQRVRFIVALAGIAFVVVLMFMQLGFQDALYESATQVHQKLKGDLFIISSQYKSLTSQQSFPRSRLYQVLGFEGVESVSPLYVQFSKFKNPENGEKNPIYVLGVDPAFPAFDLPEVAQNLDVLKFPNRVLFDQASRPEFGPVVENFHQNEPVSVEIFPYNGTVGYQVNVGGLFTLGPSFGVDGNLIVNYATILRVFQDRTPDRIDIGIVTLKPGADVKQMQAALTKILPNDVKVFTRREYMAFEKDYWSVRTPIGFVFSLMVFMGFVVGVVVVYQILYSNISNHLMEYATLKAMGFKNKYLLDVVFQQALLLAILGYIPGLIVSYGLYDIASNATQLPVIMSPNKLLAVLVSATLMCFTSGFFSIGKLRSADPADIF
>NC_019745.1|WP_015187934.1|1664322_1665012_-|ATP-binding-cassette-domain-containing-protein
MNERNIVDIKNLNHYFGGKSIRSQVLSDINLEIKAGEVIIMTGPSGSGKSTLLTLIGGLRSVQEGSLKVLGRELYGASDDELVQVRRHIGFIFQSHNLLEFLTARQNVQMALELHNEPDRIAKAKAEAMLHAVKLGNRVNYYPSDLSGGQKQRVAIARALVSQPKLVLADEPTAALDSKSGRDVVDLMQQLAKEQGCAILMVTHDNRILDIADRTIYMEDGKLFKEVVL
>NC_019745.1|WP_015187933.1|1660205_1664171_+|magnesium-chelatase-subunit-H
MQRIVLIAGFESFNADLYRKAALLAEERCPELAIEVFSDRDITARPDAVAAALAEAQVFFGSLLFDYDQVLWLRDRVEHIPIRLVFESALELMSLTRLGAFAIGDKPKGMPKPVKFILDKFSQGREEDRLAGYISFLKIGPKLLKFVPGQKVQDLRNWLIIYGYWNAGGVENVAALFWTLAQKYLGIKVGEIPPPVETPNMGLLHPDYQGYFESPREYLEWYQSRSQRSEVRGQSRVGILLYRKHVVTRQPYIPQLIRRFEEAGFIPLPIFINGVEGHVAVRDWMTTAYETAQRQSGNIETPSLSPEAVEVDAIVSTIGFPLVGGPAGSMEAGRQVEVAKRILSAKNVPYIVAAPLLIQDIYSWTRQGVGGLQSVVLYALPELDGAIDPVPLGGLVGEKIYLIPERVQRLIGRVKKWIALRQKPASQRKIAVILYGFPPGYGATGTAALLNVPRSLLKFLQALKEHGYTVGDLPADGEELIRQVKAADEDPSLGNVTNTRTLETWLGYLKTSWIEKHWKSLTSSGIKTYGDDFHIGGVQLGNVWIGVQPPLGIPGDPMRLMFERDLTPHPQYAAFYQWLQHEFQADAVVHFGMHGTVEWLPGSPLGNTGYSWSDILLGNLPHLYVYAANNPSESILAKRRGYGVLISHNVPPYGRAGLYKELVALRDLIAEYREDPEKNYALKAAICKKIVDTGIDADCPFEDAKRLGIAFTPENARMFSNAAFNHYLVQMYEYLQVLENRLFSSGLHTLGEAPTSEELASYLQAYFGEELSEEIIDAIAQGNTIEYGQGNALPQPHQKSHTSPQPHQKSYTLPQPHQKSYTLPQPHQKSHTSPQPHQKSYTLPQPHQKSYTLPQPHQKSHTSPQPHQKSYTLPQPHQKSYTLPQEALQIRDLLAQNTDEIANLLRGLNGEYIPPAPGGDLLRDGIGVLPTGRNIHALDPYRMPSPAAYERGKEIAQNIIAQHLQEHKTYPETIAVMLWGLDAIKTRGESLGILLELVGAEPVKEGTGRIVRYELKPLSEVGHPRIDVLGNLSGIFRDSFVNIIELLDDLFQRAATVDEPEEQNFIRKHYLALRSQGVENASARLFSNPAGDFGSMVNERVVDGNWESGDELGNTWRDRNVFSYGRQDKGQARPEVLTQLLQKCDRIVQEIDSVEYGLTDIQEYYANTGGLKKAAEKQRGKKVNASFVESFSKDTTPRNLDDLLRMEYRTKLLNPKWAEAMANQGSGGAFEISQRMTALIGWGGTADFSDSWVYDQAADTYALDPEMAEKLRKANPEAFRNIVGRMLEAHGRGFWQADAEKLEKLRELYELADEELEGVTI
>NC_019745.1|WP_015187932.1|1659334_1659904_-|DUF1997-domain-containing-protein
MSTRFSASQAVEIVVPEQPIPIQHYLRQPQRLVNALVDPSRVEHLSSERFRLTMRPLTFMTLSIQPTVDIKVWAEANGTIYLQSQGCEIRGVDYINQRFALNLKGYLSPCQVGSNTGLHGNADLEVQVELPPPLWLTPKPILETAGNGLLKSVLLTIKQRLQHQLLADYYAWASDTEDTDAGLIIPQVP
>NC_019745.1|WP_015187931.1|1658700_1659354_+|ribonuclease-HII
MKNDYINLDLDFALSNQHSISLAGVDEAGRGALFGPVVAAAVILPPAALPELAASQVRDSKQLSSYRRQQLAAKICTLAVDWRVGFASTAEIDNINILQASLLAMKRAVTKLKVQPELCLVDGNQAIKDLPIPQQTLVKGDERSLVIAAASIIAKVWRDDLIVRLAAKYPMYDLVANKGYGTARHLQALQQYGSSRLHRLSFRPCQMRAMATKELAE
>NC_019745.1|WP_015187930.1|1656627_1658652_+|ribonuclease-E/G
MPKQIIIAEQHNIAAVFSEDQIQELVVATGRHQIGDIYLGVVENVLPGIDAAFVNIGDTERNGFIHVTDLGPLKLKRTAGAITELLAPQQKVLVQVMKEPTGNKGPRLTGNITLPGRYVVLMPFGRGVNLSRRIKNENERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIMEDLESLQRQWEAILQEAQSTRAPSLLNRDNDFIQRVLRDMYGADVNRIVVDSNTGLRRVKQYLINWSGGQAPQGLLIDHHRDRIPILEYFRINAAIREALKPRVDLPSGGYVIIEPTEALTVVDVNSGSFTRSATARETVLWTNCEAATEIARQLRLRNLAGVIIVDFIDMESRKDQLQVLEHFNKALKADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCPTCGGLGHLVHLPGESERDPIALRNGGERTMGETLRFAESRDYTTEPAADYNVEPGDNEIANLNILNHPSYQELGENNKNRRTRRRLIGRVEGPVKDEPRMPAAPINLVSDRDQDFEPESESAPSEVSLPIIGKNNWIERDRSARPTKPEPVKPAVVEPPEIVSVEMTPEEQEIYAMMGVSPLVHLNRSVKNSRSLIINVVLPGQAPSEVAKEEDVPVPASSESEPMTISAEVPSESFVTNTEDSSVATVTDEGDNGGGVVTRRRRRRSSAVERGEE
>NC_019745.1|WP_015187929.1|1653373_1655989_+|TIGR03960-family-B12-binding-radical-SAM-protein
MTVAVERLITSEISRPARYLGNELGAVHKPWDAAKVRWVLTYPELYEVGASNLGHIILYNILNAQPRELCDRAYLPAPDLAAKLRATQTPLFAVESKRSLQEFDILGFSLSYELGATNILEMLDLAGIPLTWKDRQASNTYPLIFAGGQTATSNPEPYADFFDFFALGDGEELLPEIGLVIEEGKTRGLSRQDLLLDLAQIPGVYVPQFYDMAADGSIYPNTVDVPRRILRRVAAPIPAYSIGLVPYVETVHDRLTIEIRRGCTRGCRFCQPGMLTRPARDVEPEAVVTAIEQGMRATGYNEFSLLSLSCSDYLSLPAVGMEIKNRLQAENISLSLPSQRVDRFDENIAQILGGTRQSGLTFAPEAGTQRLRDIVNKGLTNEELLGGVKTAWEQGWDKIKLYFMIGLPGETDVDVLGIAETVAWLQRECRAKGRRPLAFNLTISNFTPKPHTPFQWHSVSTAEFERKQELLRQEFRRMRGVKANFTDVRISAMEDFIGRGDRRLGSVIRRAWELGAGMDAWYDSVERAFNAWGEAIAEAGLSWKYRQIEGVRGQGSEVSEEIAEGQPALDTPLPWDHIDTGISKQWLKEDLQRALAAAIVPDCSFDSCSHCGVCSTDFGHNIVIEPPPIPEFIGDFVPKTTKVQRLRVHFGKLGDMALVGHLDLVRLFDRAIRRAALPISFTGGFHPSPRMSIAQALPLGATSSGEIIDFELTQEVAPQEFQHRLSQQLPSDMPVYSVAVVDLKAPAATQILNKAEYLITVTTTNQTTSAQWQEWVAAIANSKVIWFEQTSKSGKRQNVNLRDRLFELSVEPREANTIIRYVGSCRNDGTQLRPEQVIFMLEQVAPQQEFYIRHIHRQQLILEENSSEAVS
>NC_019745.1|WP_041918542.1|1652882_1653272_+|STAS-domain-containing-protein
MQTMIAYPKIKLIKPYGFFDAANAAEFQRQLKIAVTQDDHTGILVDMENVESINSAGLIALVQSLNLAKTWGKRFSLCAVSPALRIIFELTQLDLVLEIFESFAAFEAAIAIPEVATAHSYYSQQSMCA
>NC_019745.1|WP_015187927.1|1652139_1652334_-|hypothetical-protein
MKSRYGIRQLVEKALYIKRLTPDIENAINSELTAQGHISDIDYEALELLMAEMDAGRIKLVPSF
>NC_019745.1|WP_015187926.1|1651682_1652069_+|hypothetical-protein
MDFNCDFQPRQIVYLENDNQRLYAEVIQVVESRRMCWVRPLVLVTYSGDVTSEQPPVATDLRFAADLLWHSILFRPALDTEVIPFLVEPLATEPAAETHSASVAQLNQFIRRVWQMSEDYPRTELDSG
>NC_019745.1|WP_015187937.1|1668626_1669958_+|chromosome-partitioning-protein-ParB
MPIVTIAQIKVGLNRRPIKQQKVIELIESIKANGLLNPITVDQDLNLIAGLHRLTACKMLGLEQVECNIINCADSAHARLAEIDENLIRSELDALERAELWLERDRILEGLQLRAKPGDNQYTYKGKGSETISPPPKTTFELAQAVGYTERTFQQGKQIAKSILPEVKEAIKGTAIAKSTTALLKVARAGSKEREQAEKAEKAIQEAQKQEERQRQAQLADEARAKQRELQLQTLRNVAAQKAAKLKKKELRKHLQPQAKEITTQDVLNTQPGDQWLLARHLVYCGDTASDEFIRCLPSHAALAIATPSTIWRHDYLIDEARVVAVLRTAGYIHQFCTQQRMPFQYELLIGGIYVALFSYSSLMAPQNPIEVEGVEGIVAFLISLYSQEGNFVLAPFIGHGEALICCERMGRICFTGDLEPQHVSQAIARWQQWTGRQVQRGS
>NC_019745.1|WP_155823610.1|1670281_1670431_-|hypothetical-protein
MLNSSDIFIQFCSVFIRACSVSVYLLMLTKGIEREQGAIALYLDGYTIF
>NC_019745.1|WP_015187938.1|1670622_1670901_+|hypothetical-protein
MAFIKIENVVINTNYIAAIKLDNQTISGESSVSLLMATPKLPLFQIEGAFPNHYHYEWIDFVGREAKALKDYFTSFNNVIDLLPQPCKVKEM
>NC_019745.1|WP_015187941.1|1677784_1681045_+|type-I-polyketide-synthase
MLTQKQAPKIAITGMNLIAGSCQDLDSFERIVYEGKQNFIELPLSRWQGKAEQLLKENKIENNQVPLGGYLPFKIDEQLAIDNIEELNPQELLMLKVANNALQDAEIKPGEKVAVIIATATQISLQKLYSKQQFTRQLQTILAGKTTTNHSALATTNISQTQSEYRSPLENTIATRISALWQFEAPAFTLTAEENSAFKALEVAQNLLVLGEVDAVVVGAVDLAGSSESVLLRNQLAKINTGVPTLSYDENANGWIVGEGAGAVVLKLLDTAIASCDRIYAVIDAISLLPQHTTSAYDSAAVTQVCQRAFQIADLYPQDIDYLEVHGSGVEAEDTAEIAGLLAAYQTSTELSCAIGSVKANIGHTYAAAEIMSLIKTALCLYYRYIPATPQWSRPKNPEIWQESPFYVATESKPWFSALEKPRSAAINSISLDGSYAHIILSEDTSKKNLTRFYADSNRYLTQMPFYLFAIAAENQTDLIAQLHALEQTIKDSNALTTAASQTFTTFQKQANAAYTLTLLGRNKDDLLREIQRAFTGVERAFEQNGDWHSPVGSYFTTNPLGKKGAIAYVYPGAYNSYVGISRSLFRLFPQIYDDIVIKSACNRVANIEKLLYPRSLHKLSKRQLESIEQQLLNDPLAMLESEMGYAGLVTTIFKNYFQIKPQCSFGYSLGETSMMFSHSVWTDFQECSNALNSSSLFSTRLAGSKDAVREFWGLPLVENPDEFWSTYVLITSVADVQEGIKQENQVYLTQINTSKECIIAGETQACLRFIEKLKCDAFRAPFNHVIHCEAMRSEYPELVRIKTLPVQKIPETIFYSSAKYAQIALNSESIAHHIAECLCQQVDFPRLVNRVYADGVRVFIEVGAGSHCSRWISENLKGQEHVTVSVNRRGVDDHTSILKALAKLLSHQVSLDLSSLYARSLETSLEPQQESLSLTLPLNQAKSDDNQIELDSVENSAVVNKNIVIEQVPMQVLQRDNTTISVEAIPTSAETIKVIKQTNPVIPLVSQQTVLPKRNHCLEDNNTYLKLKENNQRTTQIHTQFLQARQKALQQMSRMIQLQMNYSQLVTQDINTNPPVSKPVSLSIS
>NC_019745.1|WP_041918994.1|1681080_1682739_+|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein
MVRGLTNVVNTINKSDRLKFTGASTQAWYGSLDTVAFDEAGIKAKLLNLAQPCYIVRSNNQIGATNEGYTYTANNGKSGQAELLTATPPLSTSQLGDASFLDFHQVKYAYATGAMAHGIASEELVIALGKAKILSSFGAGGLAPSRVESAINQIQQALPAGPYAFNLLHSPSEPAIERRAVDLYLKYGVTTVEASAFLDLTPNVVYYRAAGLSLNSHQQILTKNKLIAKLSRREIAIKFLQPAPTKILKELVAQNLITELQATLAEKIPVADDITVEADSGGHTDNRPLVCLLPSILELRDEVQEKYGYQQPVRVGVAGGISTPQSALAAFMMGAAYVVTGSVNQSCVEAGTSPHTKELLAQAEMPDVMMAPAADMFEMGVKLQVLKRGTLFPVRAQKLYELYKNYDSINEIPAVEREKLEKQIFRRSLNDVWEDTVAYVSTRNPDKIHKAANNPKLKMALIFRWYLGLSSRWSNSGEKGREIDYQIWCGPAMGSFNDWVRGSYLSEPSNRKVADVADQIMTGAAYLYRIQILKMQGLQLPIAFHQYRPSQF
>NC_019745.1|WP_015187943.1|1682747_1684268_+|NAD-dependent-epimerase/dehydratase-family-protein
MVLSDSHTLQKTYTATDIQTWLIAQVCEQVGIEPEEIDIQESLESYGLDSAQAMTIVSKAEHFLGFSLSPVWLWHYPTIATLSQRLAEEFTLESQAKQESFAVDTIPKLDLSAEAVLDATISPEDAFLDAVDEPESVFLTGGTGFLGAFLIQELLQKTAADVYCLVRAAHPEEGKKRLQQNLERYNLWQDELSDRIIPVLGDLSQPLLGLSSAQFQMLAGNIDAIYHSAALLNYVYPYSALKAANVLGTQEILRLACQFKVKPVHYVSSVAIFESANYAGKVVKEQDEFDHWAGIYLGYSQTKWVAEKLVKIARDRGLPVTIYRPPLIAGHSKTGVSNVDDFICLMLKGCIQLGSFPDIDYMLDMSPVDYVSQAIVYLSQQKESIGKAFHLQHPQPIHIREFFEWVKSLNHSIQPMPYEQWQAEVLNSVCSVDNPLYTLRPFLLEKWSDEQLTIPELYMQARRPQISCEQTVEALAHSDISCPSIDAQLFGKYLSNLIDNGFLQVA
>NC_019745.1|WP_015187944.1|1684380_1684677_+|acyl-carrier-protein
MNQSQPNSIKNTYTAAEIQNWLIVQISEQLAIESDEINIREPLDSYGLDSAQAMLIAGKAEKLLGCQISPVLIWHYPTIEGLSQRLAEESEDSEFFEI
>NC_019745.1|WP_015187945.1|1684711_1686541_+|hypothetical-protein
MKVTELLHNLSQQGVQLQVNNDKLSIRSSKGVLSSEIRAALVKHKAEIIALLRQQEVATVCGLEHELSLPTIGRLISGYFQAATDFKPPIINPKFMATKLTVTFKPLPKGYNNLQVIQFREELESKLIEYGVKVLPWQQATKVLRYKITVPILGWQKSFSSKVVKMGVDAVIDVERHYSYLRKFGIWVAEKGYEIYSHFVTRLSVSRIAKLSSWAEEHAAKYIEDPTNTQVIVLTKLDEELTNPDLPYTRKIKVGLSTLVRTFSEIVLGVSEQNISILNMNLSDSIHSRKDIDSFVLKSLIPKIFVPIFPLPLSKFEIGEYAPKSSIYAAHLVKLGNKLASTELFPPGAQLSQILKRKSHRDIVNVIVNGRTGVSYGFVAYVEAPYYMGAREISANQWIKLYPVEGFNNDEVRQNEIGRRYIRIKVADEYLYKQIPDIWLVSSRSGANKTNLNLETDVIRVGLKEKLYLQLPQGITPETDIKPSYDIYVMLAIALAAALYVPQLIKLGAPIVHFHGYPAQAWLLPNEYCVGVNNPSVPCGTYESGVFNFLGISSLAQRKDIALISLIEPDHGTNIIAADLDYLVARLQAGCSKKQIELGGKNFASLQEK
>NC_019745.1|WP_015187946.1|1686613_1688245_+|cyclic-peptide-export-ABC-transporter
MNLIRLLLQTSVIHLAVAVMAGILSGASAAGLIALINTTLTQNSTSTAIVWTFAALCLLRLATNLTSQVLLIRLSQTAILDLRMRMSRRILASPLSQLENIGAPRLLAVLTEDIQAISNTAFVIPFFCINFAIVIGCLVYLCWLSWSVFLIAACFMFLGICTYQLPIVKSRSFLKLAREQEDRLYDHFRAITEGTKELKLHQQRRQAFFSEALYTTARSHRHYNVLGMSIFAAAASWGQILFFLAIGLILFVLPTLTSLNTVVVIGYALTIIYLMTPLEYIMSMLLPLSKATVALQKIESLGLSLTSYYPECANTLTQLPAWECLKLVGVTHTYYQEREDTHFILGPIDLKIYAGELLFIIGGNGSGKSTLIKLITGLYPPDTGEIYLDDKRISDREDYRQQFSAIFSDFYLFERFLGIENLHINTQTHNYLVQLQLDHKVHIEDGILSTTALSQGQRKRLALLTAYLEDRPFYVFDEWASDQDPLFKKIFYTQLLPELKKKGKTVIVISHDDQYFGIADRIVKLEYGSLKFYKKPHNVTISG
>NC_019745.1|WP_015187947.1|1688300_1689425_+|sulfotransferase
MYGFGSFTVLVKLLFRHGADKKHLLKVLRVLWLSFLTIPIKLWENFKFQSKIDQQEIKEPPIFILGHWRSGTTYLHYLMSQDPKLGYVSSFQAFAPDFFITGNQTLIPFISKYFPQLLKKVVPEKRKMDNVKFSLDYPAEEEFAIGNISCCSLYHGAFVFPKHIESYFKKYVLFEDEFKDKEEWQRVYIKVLKKATFSMQGKRLVLKNPPNTARIKVLLEMFPNAKFIHIYRNPFIVYNSRLKEYKASTQLFGFQKIEDAEVEEKSLNLYQQVMHKFFVEKNLIPQNNFVEVKFENLENNPLQEIEQIYNKLSLPGFNSAKTYFQSFIDLQKNYKKNEYRLDRETIAKVLFHWGFAIHTWNYKVPQIQSQKAKL

Crispr_ID: NC_019745_5

• CRISPR_ID: NC_019745_5
• CRISPR_location: 2248605-2250739
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 29 spacers
• Cas_protein_info: csb2gr5,cas7,cas8u1,cas3

Consensus repeat of NC_019745_5

Consensus_repeat	Method
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CRISPRCasFinder
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CRT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	PILER-CR

spacers of NC_019745_5

>5.1|2248642|36|NC_019745|CRISPRCasFinder,CRT
TTCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAA
>5.2|2248715|36|NC_019745|CRISPRCasFinder,CRT
TCTTCGTAATACGAGTTACAAGGTACTTCAGCAATA
>5.3|2248788|35|NC_019745|CRISPRCasFinder,CRT
CAAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTT
>5.4|2248860|34|NC_019745|CRISPRCasFinder,CRT
AAAAGTTGAGTACATCGACAAAGTAATCACAAAA
>5.5|2248931|34|NC_019745|CRISPRCasFinder,CRT
GCAAAAGATTTGGCTTTGGACCAAGGACGGCATC
>5.6|2249002|34|NC_019745|CRISPRCasFinder,CRT
CGCAGCTTGCTATTGGCGAACAAAGACTGGTAAA
>5.7|2249073|35|NC_019745|CRISPRCasFinder,CRT
GCGATCGCATGGCTAAAAGTTATTGAAAATTCTTT
>5.8|2249145|36|NC_019745|CRISPRCasFinder,CRT
GTTTTTATTGCGATCTTCTACGATACGTCTTGCGAC
>5.9|2249218|35|NC_019745|CRISPRCasFinder,CRT
CTCTTTAATATACCAGCCCGCAACGATAGCGGTAT
>5.10|2249290|38|NC_019745|CRISPRCasFinder,CRT
GCCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCC
>5.11|2249365|34|NC_019745|CRISPRCasFinder,CRT
AGCACTCAAGGTGGCCCGTAACATTGCAGAGATG
>5.12|2249436|34|NC_019745|CRISPRCasFinder,CRT
GAAGAATCGTGGAAAATCTTTTACGATTTACTGC
>5.13|2249507|35|NC_019745|CRISPRCasFinder,CRT
TTGATGCATTTTGTGGGTATACGGAATCAATCGCT
>5.14|2249579|39|NC_019745|CRISPRCasFinder,CRT
TTAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGC
>5.15|2249655|36|NC_019745|CRISPRCasFinder,CRT
AAGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGT
>5.16|2249728|36|NC_019745|CRISPRCasFinder,CRT
GGGTTTTGGGACACAGCTTCGATCTGGCAATATATT
>5.17|2249801|36|NC_019745|CRISPRCasFinder,CRT
CTGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTG
>5.18|2249874|36|NC_019745|CRISPRCasFinder,CRT
AAAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGC
>5.19|2249947|37|NC_019745|CRISPRCasFinder,CRT
TCAATATTGCCACCACGCACAGCAAATTCAATTTTTT
>5.20|2250021|35|NC_019745|CRISPRCasFinder,CRT
CGAAGTAAGTATTCGTCGTTATACTTGCTTAAAAT
>5.21|2250093|35|NC_019745|CRISPRCasFinder,CRT
CGCAAGGAATTGTGCCTAACGCCATCCATTTCGCC
>5.22|2250165|33|NC_019745|CRISPRCasFinder,CRT
GCGCGTAAAGCAATGAATCAAATCACAGAACAC
>5.23|2250235|34|NC_019745|CRISPRCasFinder,CRT
GAGTATTGCCCTCGCTTGTGGCGACTCAACTCTT
>5.24|2250306|34|NC_019745|CRISPRCasFinder,CRT
CGACGGCTAACCCAGTAATATGCAGCGAGTTTTT
>5.25|2250377|38|NC_019745|CRISPRCasFinder,CRT
TTGCGATCGCCTAATCAATACATTTGCATGGCTTCAAA
>5.26|2250452|37|NC_019745|CRISPRCasFinder,CRT
CTTGGGTGTATCTACAGGACAAACTATGGCTTTTGAT
>5.27|2250526|34|NC_019745|CRISPRCasFinder,CRT
TTTGCAGGGAAATACAAAGCTGTTGCAGTAAGTC
>5.28|2250597|35|NC_019745|CRISPRCasFinder,CRT
AGTACTTCGATTGCTAAACTTTGCAACTTCACTCA
>5.29|2250669|34|NC_019745|CRISPRCasFinder,CRT
ACTATCGATTACGTTAGAAAAGGGTTACAATCCG
>5.30|2248643|36|NC_019745|PILER-CR
TTCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAA
>5.31|2248716|36|NC_019745|PILER-CR
TCTTCGTAATACGAGTTACAAGGTACTTCAGCAATA
>5.32|2248789|35|NC_019745|PILER-CR
CAAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTT
>5.33|2248861|34|NC_019745|PILER-CR
AAAAGTTGAGTACATCGACAAAGTAATCACAAAA
>5.34|2248932|34|NC_019745|PILER-CR
GCAAAAGATTTGGCTTTGGACCAAGGACGGCATC
>5.35|2249003|34|NC_019745|PILER-CR
CGCAGCTTGCTATTGGCGAACAAAGACTGGTAAA
>5.36|2249074|35|NC_019745|PILER-CR
GCGATCGCATGGCTAAAAGTTATTGAAAATTCTTT
>5.37|2249146|36|NC_019745|PILER-CR
GTTTTTATTGCGATCTTCTACGATACGTCTTGCGAC
>5.38|2249219|35|NC_019745|PILER-CR
CTCTTTAATATACCAGCCCGCAACGATAGCGGTAT
>5.39|2249291|38|NC_019745|PILER-CR
GCCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCC
>5.40|2249366|34|NC_019745|PILER-CR
AGCACTCAAGGTGGCCCGTAACATTGCAGAGATG
>5.41|2249437|34|NC_019745|PILER-CR
GAAGAATCGTGGAAAATCTTTTACGATTTACTGC
>5.42|2249508|35|NC_019745|PILER-CR
TTGATGCATTTTGTGGGTATACGGAATCAATCGCT
>5.43|2249580|39|NC_019745|PILER-CR
TTAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGC
>5.44|2249656|36|NC_019745|PILER-CR
AAGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGT
>5.45|2249729|36|NC_019745|PILER-CR
GGGTTTTGGGACACAGCTTCGATCTGGCAATATATT
>5.46|2249802|36|NC_019745|PILER-CR
CTGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTG
>5.47|2249875|36|NC_019745|PILER-CR
AAAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGC
>5.48|2249948|37|NC_019745|PILER-CR
TCAATATTGCCACCACGCACAGCAAATTCAATTTTTT
>5.49|2250022|35|NC_019745|PILER-CR
CGAAGTAAGTATTCGTCGTTATACTTGCTTAAAAT
>5.50|2250094|35|NC_019745|PILER-CR
CGCAAGGAATTGTGCCTAACGCCATCCATTTCGCC
>5.51|2250166|33|NC_019745|PILER-CR
GCGCGTAAAGCAATGAATCAAATCACAGAACAC
>5.52|2250236|34|NC_019745|PILER-CR
GAGTATTGCCCTCGCTTGTGGCGACTCAACTCTT
>5.53|2250307|34|NC_019745|PILER-CR
CGACGGCTAACCCAGTAATATGCAGCGAGTTTTT
>5.54|2250378|38|NC_019745|PILER-CR
TTGCGATCGCCTAATCAATACATTTGCATGGCTTCAAA
>5.55|2250453|37|NC_019745|PILER-CR
CTTGGGTGTATCTACAGGACAAACTATGGCTTTTGAT
>5.56|2250527|34|NC_019745|PILER-CR
TTTGCAGGGAAATACAAAGCTGTTGCAGTAAGTC
>5.57|2250598|35|NC_019745|PILER-CR
AGTACTTCGATTGCTAAACTTTGCAACTTCACTCA
>5.58|2250670|34|NC_019745|PILER-CR
ACTATCGATTACGTTAGAAAAGGGTTACAATCCG

CRISPR arrays and Neighbor proteins around NC_019745_5

CRISPR arrays

The CRISPR arrays of NC_019745_5

>merge|NC_019745|5|2248605-2250739|CRISPRCasFinder,CRT,PILER-CR
ATTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTTCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAAGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTCTTCGTAATACGAGTTACAAGGTACTTCAGCAATAGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCAAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACAAAAGTTGAGTACATCGACAAAGTAATCACAAAAGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGCAAAAGATTTGGCTTTGGACCAAGGACGGCATCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCGCAGCTTGCTATTGGCGAACAAAGACTGGTAAAGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGCGATCGCATGGCTAAAAGTTATTGAAAATTCTTTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGTTTTTATTGCGATCTTCTACGATACGTCTTGCGACGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCTCTTTAATATACCAGCCCGCAACGATAGCGGTATGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGCCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACAGCACTCAAGGTGGCCCGTAACATTGCAGAGATGGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGAAGAATCGTGGAAAATCTTTTACGATTTACTGCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTTGATGCATTTTGTGGGTATACGGAATCAATCGCTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTTAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACAAGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGGGTTTTGGGACACAGCTTCGATCTGGCAATATATTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCTGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTGGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACAAAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTCAATATTGCCACCACGCACAGCAAATTCAATTTTTTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCGAAGTAAGTATTCGTCGTTATACTTGCTTAAAATGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCGCAAGGAATTGTGCCTAACGCCATCCATTTCGCCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGCGCGTAAAGCAATGAATCAAATCACAGAACACGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACGAGTATTGCCCTCGCTTGTGGCGACTCAACTCTTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCGACGGCTAACCCAGTAATATGCAGCGAGTTTTTGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTTGCGATCGCCTAATCAATACATTTGCATGGCTTCAAAGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACCTTGGGTGTATCTACAGGACAAACTATGGCTTTTGATGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACTTTGCAGGGAAATACAAAGCTGTTGCAGTAAGTCGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACAGTACTTCGATTGCTAAACTTTGCAACTTCACTCAGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACACTATCGATTACGTTAGAAAAGGGTTACAATCCGGTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC

>NC_019745|5|5|2248605-2250739|CRISPRCasFinder
ATTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TCTTCGTAATACGAGTTACAAGGTACTTCAGCAATA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CAAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AAAAGTTGAGTACATCGACAAAGTAATCACAAAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCAAAAGATTTGGCTTTGGACCAAGGACGGCATC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGCAGCTTGCTATTGGCGAACAAAGACTGGTAAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCGATCGCATGGCTAAAAGTTATTGAAAATTCTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GTTTTTATTGCGATCTTCTACGATACGTCTTGCGAC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CTCTTTAATATACCAGCCCGCAACGATAGCGGTAT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AGCACTCAAGGTGGCCCGTAACATTGCAGAGATG
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GAAGAATCGTGGAAAATCTTTTACGATTTACTGC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTGATGCATTTTGTGGGTATACGGAATCAATCGCT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AAGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GGGTTTTGGGACACAGCTTCGATCTGGCAATATATT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CTGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTG
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AAAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TCAATATTGCCACCACGCACAGCAAATTCAATTTTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGAAGTAAGTATTCGTCGTTATACTTGCTTAAAAT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGCAAGGAATTGTGCCTAACGCCATCCATTTCGCC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCGCGTAAAGCAATGAATCAAATCACAGAACAC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GAGTATTGCCCTCGCTTGTGGCGACTCAACTCTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGACGGCTAACCCAGTAATATGCAGCGAGTTTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTGCGATCGCCTAATCAATACATTTGCATGGCTTCAAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CTTGGGTGTATCTACAGGACAAACTATGGCTTTTGAT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTTGCAGGGAAATACAAAGCTGTTGCAGTAAGTC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AGTACTTCGATTGCTAAACTTTGCAACTTCACTCA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	ACTATCGATTACGTTAGAAAAGGGTTACAATCCG
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC

>NC_019745|5|1|2248605-2250739|CRT
ATTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TCTTCGTAATACGAGTTACAAGGTACTTCAGCAATA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CAAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AAAAGTTGAGTACATCGACAAAGTAATCACAAAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCAAAAGATTTGGCTTTGGACCAAGGACGGCATC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGCAGCTTGCTATTGGCGAACAAAGACTGGTAAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCGATCGCATGGCTAAAAGTTATTGAAAATTCTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GTTTTTATTGCGATCTTCTACGATACGTCTTGCGAC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CTCTTTAATATACCAGCCCGCAACGATAGCGGTAT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AGCACTCAAGGTGGCCCGTAACATTGCAGAGATG
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GAAGAATCGTGGAAAATCTTTTACGATTTACTGC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTGATGCATTTTGTGGGTATACGGAATCAATCGCT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AAGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GGGTTTTGGGACACAGCTTCGATCTGGCAATATATT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CTGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTG
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AAAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TCAATATTGCCACCACGCACAGCAAATTCAATTTTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGAAGTAAGTATTCGTCGTTATACTTGCTTAAAAT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGCAAGGAATTGTGCCTAACGCCATCCATTTCGCC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GCGCGTAAAGCAATGAATCAAATCACAGAACAC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	GAGTATTGCCCTCGCTTGTGGCGACTCAACTCTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CGACGGCTAACCCAGTAATATGCAGCGAGTTTTT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTGCGATCGCCTAATCAATACATTTGCATGGCTTCAAA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	CTTGGGTGTATCTACAGGACAAACTATGGCTTTTGAT
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	TTTGCAGGGAAATACAAAGCTGTTGCAGTAAGTC
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	AGTACTTCGATTGCTAAACTTTGCAACTTCACTCA
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC	ACTATCGATTACGTTAGAAAAGGGTTACAATCCG
GTTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC

>NC_019745|5|1|2248606-2250739|PILER-CR
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	TCAAGTGTTTATCCTTGCATTCCCCGCAATGCTAAG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	CTTCGTAATACGAGTTACAAGGTACTTCAGCAATAG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	AAGCTCCTAATAATTTCAGCAGAGTAAGCGCTTTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACA	AAAGTTGAGTACATCGACAAAGTAATCACAAAAG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	CAAAAGATTTGGCTTTGGACCAAGGACGGCATCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	GCAGCTTGCTATTGGCGAACAAAGACTGGTAAAG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	CGATCGCATGGCTAAAAGTTATTGAAAATTCTTTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	TTTTTATTGCGATCTTCTACGATACGTCTTGCGACG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	TCTTTAATATACCAGCCCGCAACGATAGCGGTATG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	CCCTGTAACCGCAAAGCAAGCGATTTACACGGAATCCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACA	GCACTCAAGGTGGCCCGTAACATTGCAGAGATGG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	AAGAATCGTGGAAAATCTTTTACGATTTACTGCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	TGATGCATTTTGTGGGTATACGGAATCAATCGCTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	TAATTAAGGCACCCGTTTTATTCCCTTCCAAGTCCTGCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACA	AGTTTTTTAAAGTACCCAAACAAGGTGGTGCTAGTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	GGTTTTGGGACACAGCTTCGATCTGGCAATATATTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	TGCGGGGGCAGGAGCTTTTACTGGAATTACGCTTGG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACA	AAGTTTAACAAAAACTTGTTTAAAAAAACAAAGGCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	CAATATTGCCACCACGCACAGCAAATTCAATTTTTTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	GAAGTAAGTATTCGTCGTTATACTTGCTTAAAATG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	GCAAGGAATTGTGCCTAACGCCATCCATTTCGCCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	CGCGTAAAGCAATGAATCAAATCACAGAACACG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACG	AGTATTGCCCTCGCTTGTGGCGACTCAACTCTTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	GACGGCTAACCCAGTAATATGCAGCGAGTTTTTG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	TGCGATCGCCTAATCAATACATTTGCATGGCTTCAAAG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACC	TTGGGTGTATCTACAGGACAAACTATGGCTTTTGATG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACT	TTGCAGGGAAATACAAAGCTGTTGCAGTAAGTCG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACA	GTACTTCGATTGCTAAACTTTGCAACTTCACTCAG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTACA	CTATCGATTACGTTAGAAAAGGGTTACAATCCGG
TTTCAATTTAGTCCCTTCAATAAAAGGGATTTCTAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015188416.1|2259457_2261101_+|phytoene-desaturase	unknown	unknown	gnl|CDD|274273
NC_019745.1|WP_015186563.1|2247436_2248315_+|IS982-family-transposase	unknown	unknown	gnl|CDD|372648
NC_019745.1|WP_015188407.1|2243924_2244584_-|hypothetical-protein	unknown	unknown	gnl|CDD|236766
NC_019745.1|WP_015188415.1|2258462_2259230_-|class-II-glutamine-amidotransferase	unknown	unknown	gnl|CDD|372525
NC_019745.1|WP_015188402.1|2236916_2237444_+|outer-membrane-beta-barrel-protein	unknown	unknown	gnl|CDD|379226
NC_019745.1|WP_015188413.1|2253365_2255405_-|type-I-U-CRISPR-associated-protein-Csx17	cas8u1	cd09767_cas8u1_CAS-I-U	gnl|CDD|274989
NC_019745.1|WP_015188408.1|2245181_2245571_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_081588060.1|2250906_2252439_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NC_019745.1|WP_015188405.1|2242091_2242802_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl|CDD|236959
NC_019745.1|WP_015188409.1|2246035_2246497_-|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_019745.1|WP_015188419.1|2262682_2262907_-|ferredoxin-thioredoxin-reductase-subunit-alpha	unknown	unknown	gnl|CDD|367263
NC_019745.1|WP_015188410.1|2246516_2246963_-|DUF29-domain-containing-protein	unknown	unknown	gnl|CDD|366774
NC_019745.1|WP_015188412.1|2252383_2253373_-|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	gnl|CDD|378223
NC_019745.1|WP_041919048.1|2262415_2262643_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015188404.1|2240085_2242071_+|sulfite-reductase,-ferredoxin-dependent	unknown	unknown	gnl|CDD|131097
NC_019745.1|WP_015188417.1|2261437_2262223_+|YdcF-family-protein	unknown	unknown	gnl|CDD|99750
NC_019745.1|WP_041919047.1|2242830_2243904_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_019745.1|WP_155823673.1|2257850_2258012_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015188403.1|2237798_2239397_-|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|224011
NC_019745.1|WP_015188414.1|2255388_2257572_-|CRISPR-associated-helicase-Cas3'	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|187770

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019745.1|WP_015188413.1|2253365_2255405_-|type-I-U-CRISPR-associated-protein-Csx17	cas8u1	cd09767_cas8u1_CAS-I-U	5.3e-42	138.8	0.0
NC_019745.1|WP_081588060.1|2250906_2252439_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.2e-26	87.0	5.9
NC_019745.1|WP_015188414.1|2255388_2257572_-|CRISPR-associated-helicase-Cas3'	cas3	cd09696_cas3_CAS-I-U	1.8e-48	159.6	0.8
NC_019745.1|WP_015188412.1|2252383_2253373_-|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	1e-12	43.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015188416.1|2259457_2261101_+|phytoene-desaturase	gnl|CDD|274273	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_019745.1|WP_015186563.1|2247436_2248315_+|IS982-family-transposase	gnl|CDD|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.50502e-93
NC_019745.1|WP_015188407.1|2243924_2244584_-|hypothetical-protein	gnl|CDD|236766	PRK10811, rne, ribonuclease E; Reviewed.	1.33291e-05
NC_019745.1|WP_015188415.1|2258462_2259230_-|class-II-glutamine-amidotransferase	gnl|CDD|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	7.00306e-150
NC_019745.1|WP_015188402.1|2236916_2237444_+|outer-membrane-beta-barrel-protein	gnl|CDD|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	6.09641e-05
NC_019745.1|WP_015188413.1|2253365_2255405_-|type-I-U-CRISPR-associated-protein-Csx17	gnl|CDD|274989	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc. Members of this protein family are found exclusively in CRISPR-associated (cas) type I system gene clusters of the Dpsyc subtype. Markers for that type include a variant form of cas3 (model TIGR02621) and the GSU0054-like protein family (model TIGR02165). This family occurs in less than half of known Dpsyc clusters.	8.75558e-49
NC_019745.1|WP_081588060.1|2250906_2252439_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	5.11425e-16
NC_019745.1|WP_015188405.1|2242091_2242802_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl|CDD|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	3.0178e-68
NC_019745.1|WP_015188409.1|2246035_2246497_-|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	5.61578e-61
NC_019745.1|WP_015188419.1|2262682_2262907_-|ferredoxin-thioredoxin-reductase-subunit-alpha	gnl|CDD|367263	pfam02941, FeThRed_A, Ferredoxin thioredoxin reductase variable alpha chain.	7.92799e-42
NC_019745.1|WP_015188410.1|2246516_2246963_-|DUF29-domain-containing-protein	gnl|CDD|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.60942e-46
NC_019745.1|WP_015188412.1|2252383_2253373_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	8.65899e-17
NC_019745.1|WP_015188404.1|2240085_2242071_+|sulfite-reductase,-ferredoxin-dependent	gnl|CDD|131097	TIGR02042, Sulfite_reductase, ferredoxin-sulfite reductase. Distantly related to the iron-sulfur hemoprotein of sulfite reductase (NADPH) found in Proteobacteria and Eubacteria, sulfite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulfite to sulfide. [Central intermediary metabolism, Sulfur metabolism].	0
NC_019745.1|WP_015188417.1|2261437_2262223_+|YdcF-family-protein	gnl|CDD|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.27164e-43
NC_019745.1|WP_041919047.1|2242830_2243904_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.0033299
NC_019745.1|WP_015188403.1|2237798_2239397_-|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.35714e-32
NC_019745.1|WP_015188414.1|2255388_2257572_-|CRISPR-associated-helicase-Cas3'	gnl|CDD|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	4.92894e-35

Protein sequences

>NC_019745.1|WP_015186563.1|2247436_2248315_+|IS982-family-transposase
MFSLEALFCHVDDFCKAFEAQWHKKLLSHGGIKRNRSKGLCWSEIMTILIAFHQNHYRNFKYFYLNQVKRYWSDAFPGLPSYQRFIEWLPSTLIPLCVYLKHCFGKCTGIGLIDSTSLKVCHNRRIAQHKVFQGLAARGKTSVDWFYGFKLHIVVNELGQLLNVTITPGNVDDRQPVPDLLSQLFGKIFADRGYVSQKLAAQLLEDFGIQFFAKPRRNMKNKLMLLHDKLLSRKRSIIETINDQLKNISQIEHSRHRSPVNFCVNVLCGLIAYCHQPKKPSLQMDWLLSQSA
>NC_019745.1|WP_015188410.1|2246516_2246963_-|DUF29-domain-containing-protein
MTDNTLYSKDFIAWAEQQALLLEAEEFQRLDLTNLIEEVRDMSRREIKAAQSQLVRLIKHLLKLRVQPDYPDKKNWLISIKDARVELDESMAESTVLKNKLLSPETLARCYAKAVVQASNETDLSLSDFPNELPYSIEQLLNPEFFGE
>NC_019745.1|WP_015188409.1|2246035_2246497_-|DUF29-domain-containing-protein
MSKNTNSLYDTDYGLWLASQIDSLKSHQWDNLDIDNLIEELEGLNRSNEHALESYLVVILTHLLKWEYQPKARSRSWQGSILNGRKRIARLFKQQPSLKSRVSDLVPEAYTDAIEIATLETGLPADVFSTECSYSADQILDLDFLPGDEELPD
>NC_019745.1|WP_015188408.1|2245181_2245571_+|hypothetical-protein
MKLADLTVETIEKIKTYRFDRIVEKHEGPEDWEAFFRFYDLEFLQLNGHDVLLPVDREHHPNITLLRCIPSADGQSLTLFLKDTTYADDAFSAGFLAVCDRLPQENFFLAIVYHEWFIIDELNVEFRNE
>NC_019745.1|WP_015188407.1|2243924_2244584_-|hypothetical-protein
MIGFIKNIFSGILSFFIGLFGGKKSQQNQPSLEGDKSAANPAKKKRKRNGYFMELDEAEEMQPTNGKQQVKQALEPVAAKLNEVAQKAEPIAAKVTEVAQKTAEPVAAKVKEATQKTEETATVAKSQKVEQPATVTKSTKTEEPATATQAPKVQLEQTAEGVKPVPAKPAASSTINKPQTETTFAPKYLNPAASSNGRRRPGPNMNSFLDMARQVKTPG
>NC_019745.1|WP_041919047.1|2242830_2243904_+|tetratricopeptide-repeat-protein
MIEQIAAAMKCQNYRLAAQLVKQVLQASPQNAWGQLYLGELHEVAGKLVLAESVYRQLLQTTTNAKVLTQARQGLQRVEARLKQQRQDAIAASTTDPHNTQIGVLILEPIPQAIKTTAARTFAQIMQLDVYTARLKLPTRGWKLYKSGKIGELRFLGENLRAAGIPCFWTTLAEIEKIRVFQVSYFQSTTPPIVVCHNEQGQQGSIAFDWSEVSQRVTAQLPIFEQVVDRDVRGKLQRKTQTQDYAQFCDLHLPERFCILRLCDRSYQFQQGCELANQPHSQTVRLNWNRLSNFFQQQIPQANVRDEFTLFADTVLDQSEMLGHLKSHINLFRRTETPWDPAFHLYSGLALIKAISS
>NC_019745.1|WP_015188405.1|2242091_2242802_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MGQLQRLAIAPTQLHNKQILLANEQQHYLHRVLRLREGDRFIAMDGTGNSWLAVLSGNYAQILESIVVESELKVAVNLILALPKGNGFDEVVRCCTEIGVSCIMPVLSDRTLLQPSPQKLERWRRIAKEAAEQSERSLIPTVLEPVPLHQALAAATSKNLYFCVARRNCPHLKTVLALATATEITIAIGPEGGWTTPEIEEAREAGFQLVSLGRRVLRAVTAPIVAMSLVSAAFDG
>NC_019745.1|WP_015188404.1|2240085_2242071_+|sulfite-reductase,-ferredoxin-dependent
MVNSSIPTPATKKPSKVEGLKERSNFLREPVATELLQDTTHFTEEAVQILKFHGSYQQDNRDNRVKGQEKDYQFMLRTKNPGGLVPPQLYLTLDKLAEEYGNQTLRATTRQGFQLHGILKQNLKNAIAAIIENLGSTLAACGDVNRNVMAPPAPFKNRADYQYAWKYAQNIADLLTPQTGAYYEIWLDGEKAISAEEDPAVKEARQKNGTGTTFHEGEEPIYGTHYMPRKFKVCVTVPEDNSVDLFSQDLTLVVMMNDDQLIGFNVYAGGGLGRTHNKEETFARLADPICYVDKEDVYDIVKAIVATQRDYGDRTDRRHARLKYLIHDWGVDKFRSMVEKYFGKPLQPFKPLPEFQYEDFLGWHEQGDGKLFLGISVQNGRIMDDAKMQLRTALREIVQQFNLPMRLTPHHNVIFYEIEPEKRQAIEAILSRCQVEADPNAIKPLVRYAMACPALPTCGLATTESERIIPSVLDRIEALLQKLGLGDEHFVIRMTGCPNGCARPYMAELGFVGTGPEMYQIWLGGSANQTRLAQVYIEKMHLNNLEVEFEPLFVYFKQARQGAETFGDFCDRVGLASIREFAANYTPQAVEETAQPAADEQIAVVETVPASNGKIRSRHRISIRDDVYDKLKIIGSREGKTLTAMVNEALETYLKDQSSEF
>NC_019745.1|WP_015188403.1|2237798_2239397_-|NAD-dependent-epimerase/dehydratase-family-protein
MLLPVVRATSKSEIIRCIQELVPLGSPEPQDSQVLATLTELTSDLIQAYQAEGQLQEDPFTDVWARTIHLYKSAVSSRVQGKVVLVTGGEGCVGSELVKKLVELGARQVVSVDKARCASLYDQKPLKVQKQAIALYAADVRNYHALKYIFETEKPEIVFHLAAQRLPGLAEVQIRETVTTAIYGTQHIIQLCEEYGVQQCIFSSTGKAARYFTAEVYAASKKLCEWQLAQAAQKGNVTYGMVRFTHMLNNSSVCQQISDKIKQGKIINIHAPHRYITAQNINEALHLLLNALVLSQPKKLKFLTVRNLGWPTETLEIALYKILEAGKHLPIYFQGLLPGYEEPCFLGQFDWSQPTETNLLINALENSQVEASGDMMMAELTCFSSEVLDKHLSIIQTLTDNLSLPEANIKYGLKTAIKEVTGSIFAQTSPQTLLKILKWGTNPKQLVSEGISLECHQDIIELIVQGLYGRLTPKCLLNTYKNINEFETLVKLLATLPSIQQELTYLKAVSQYDSYDTSSTFSIAASSFAFCS
>NC_019745.1|WP_015188402.1|2236916_2237444_+|outer-membrane-beta-barrel-protein
MKLSLKAATISALSALVIAPIVVAPGQAFAQPTGTNASYIGGGIAAGVTNGGQTGDAATFGGNIQARYAIPNTPVSARGAILFSDETSAIMPIVSYDVPVFNNTNVYVGGGYSFVEQNGKPTPLGNRNSFVLTTGVETQVARDIVLYSDAKLGIRAYENSPASAVSFQAGAAYRF
>NC_019745.1|WP_081588060.1|2250906_2252439_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MSKSRLLKKRKLLNMIHIKIQFHTNQYQACAWGNLHAEGVIDWPPAPWRILRSLVAGAYNVNLSEKYQPILKALLHKLAFVQPSYTLPPTTYIQHRSPRPQVNLKTAKVGPGKTLYSAGLLMSSHQHDLYVHWSVTLAEIEELVLSLCLSGLTYFGRKESVATMKLVDTAPEPNAEPDAQGTRIVAIANPDLDVDALWNTLNLSAHENYGVNRSAVFPGIRWATYRINQQLQVQQQADEQQRTHSVTLAVSGSPKLPLNLALKLTHRLHQALISRCPAPVFTGQEMGEPSRKHEHTIFQCLPDRTGRYVEQVRLYSYSGYSLEALAAIACCSELPRVARGYDLKLAIADIGSNEQVSEDWISSTPFFLSRFPAVRRGKPRMLVARYQKDGPEHQVLQYLQYLPWLNLQGTPTYREYKDHLALCLDGKVAVVASCQVFPGFWKWESECRQGKKVGQVGYQVQLKFATMVAGPIILGYAAHYGLGAMIPMREWVGVYQGIVQNNDMLTTSAN
>NC_019745.1|WP_015188412.1|2252383_2253373_-|type-I-U-CRISPR-associated-protein-Cas7
MLNVITVEFESALPTVKPPTFLDVGVSQAYLPWEQRLDVLLHTPQATANLIEDSIWDSVNHTLIPELTGLPFVDIYTKSGQYVASTLDLPHRLGTGYLLKNKHAQLDGQRFREGLRQRIRHSGVYQAVFALCPMSIVLGSFYTHIAGAYRIPRVLSGEFVAENAISMPTGGAVHDPVSARGKGVNLKHMFAVKNDKDQAVKKPSEAGLGNIVYVRESFKAQRYLGRFVIDTRLVDKSNLDSRAKHLIQVLSEYLVRRLLSEPVTLRTECYLIPKSETGLQKLPPLEQLEQQILAAIENCADLFEKVRVIVPDEQIQIAEEEEAVEHDPH
>NC_019745.1|WP_015188413.1|2253365_2255405_-|type-I-U-CRISPR-associated-protein-Csx17
MVTATKAVAFPHLTPTTAIAWLKAVGLLRLSGARGYWDNCFYLLDVSAENLVENLLNYQPKPFVSPWNSYSLFNKAEGLAAVLASQSKRYRLMREGYTELQDAMQSLDTAGQSAAQKKLTLMADLPRRVSNHHWLEWINAVGLMTNTQTGPRFLCNDLLGTGGNVGTTDFCTAYFQVCTQLWDLDTGEPAVDTEAFIRASVLGEPQPKTLLAQALLGHTYPAADYFDDLAPAGTSLADYLDNGGRSSQLANPVDLILYLEGATTFTGKAIPRNEVEEGGQEYTIAAYPLLLEVNSGSADTSDRTGRAYEVWLPLWEQPMDWEDFQDIVTTDLAFRLKNQVVDTIDMLDVITQANDYCGELSRFARFGLWTRKGQGKYLIYVGLATPGKTDFGAELRKWRLQARPSEKQPQAQYNLLTTIQKTLYRLQQGNAEATTAIRVLGQLEVLHSRVQTKVPPVPQLKEKWVEAVYQEYPIVEVELAAALASTAPTHVNSGHAYPFRRLLSSARYDKKKDTWFWSDEHHDKLKTFSLEALCVSLLHLWNEVWERDKYHPAHGWTYQASPDAIAAFIAGRTNDQLILELALGFALCRIPSFLAPFSHTQPLPEPYKYAASLQWSRNTSLSAQTVNALLAGSTVPLSRQLAAMQKPVVLPSAITIGKRCALALVFPCQPFHQLGEAHA
>NC_019745.1|WP_015188414.1|2255388_2257572_-|CRISPR-associated-helicase-Cas3'
MPYREFFKQCTGFSPYPWQVHFSAWSGQSIAVVAAPTGAGKEFGAVIPWLYLHKMSIPTTARLVYVLPTRSLVEQVYENTRQVVAASGLPIKVYCLKGGFIEHGFEQDLTQPAILIGTQDQLLSRALNRGFGVSWGQRPLHCAALTNDCRWVLDEIQLTGVAYSTLVQLYKHWQELGTFGRTQLCLMSATFDDRPLQGLEVERFELDTEDLAHAELAAKVTRPKPVFRAAVEDVVDVAALVEAHHLPGSLSLVVVNTVERAREIGRLISNLAPLVIHSRFLGIDREKLQQKLKGYQGVIVATQVVEAGVDLDADLLITELCPWSSFVQRCGRCGRKRTENTVQIHWLDYQQEWKPRPYDATECEATRDRLVQLPDASLYNLAQIPLPKLDLPSYQLTKRDVETFFCTHYKNRDTTYTISQYVRDPTAFTVAVVWSIERPKCLPHQKFTCPVPTQELKDFCKSYSVIPRVWGEDTWEKKEPEDGDVVWLPLAAGGYSSERGWTANPDDKCQAYSLEVEPEYNDPPFPYALSLGIHLQDTEAALREVIPYLQMLKIPERLIEELCRCARWHDWGKAHQVWQAYAQAQGELLAKSTNYSSPVQMKGYRHELASAIAAASQGASFLSQYLIAAHHGKVRDSLMPTNPNERFNAKVLRGVELGTHLPKVEISGVETLPAVELSFSGSWKQQFRNLLREYGPFRLIYLEAIIRNADVKASQYREEQAKNGNSN
>NC_019745.1|WP_155823673.1|2257850_2258012_-|hypothetical-protein
MCGGGAIADFVAPRCSKWRRTGVGWGQYHTGFSNACMNAIAYSAVGKRRKAKG
>NC_019745.1|WP_015188415.1|2258462_2259230_-|class-II-glutamine-amidotransferase
MCQLLGMNCNVPTDICFSFEGFSARGGRTDEHQDGWGIAFFESLGCRIFLDAKPAIASPVANLVRRYPIHSTHVIAHIRKATQGGIALVNCHPFQRELWGRYWVFAHNGNLLDFHAQTTFYQPVGQTDSERAFCLILETLRQSFPTGKPPLKQLYPVLRDITASIADKGIFNYLLSDGEHFFTYCSTKLCYIVRQAPFAAAHLIDEDITVDFQKLTTPCDRVAVIATTPLTDNEVWTQIHPGELLVFQDGLPHQF
>NC_019745.1|WP_015188416.1|2259457_2261101_+|phytoene-desaturase
MSRQQAIVIGAGIGGLAMGIRLQSLGFDTTIVEKLDSPGGRAYVRHADGFTFDMGPTVITVPHFIEELFSLERDRADLATPDFPDEIVDESKRIKTGVSGGSNTSRYVKIVPILPFYRIYFDDGSFFDYDGDPVHTREQIQRLGEPGDLEGYERFHQDAKAIFDRGFLELGYTHFGTVGSMLKVAPDLMRLDAVRNLFSFSSKYFKSDKLRQVFSFETLLVGGNPLSVPAIYAMIHFVEKTWGIHFAMGGTGALVNGFVRKFEELGGKMLYNAEVTQINVTRQGRKKVATGITLADGSVLNADLVVSNGDWANTYGKLIDSKYRRWNSDTRIKLTQQSMSLFVIYFGFKADGREADKLRHHTIILGPRYEELLRDIFGRKILAADFSQYLHVPTLTDPSLAPPGHHAAYTLLPVPHNGSKLDWQQLGEPLADTVLKFIDERGYLPGLTERLVHKSFITPDYFEHTLNSYVGNAFGPEPRLYQSAFFRPHNRSEDIANLYLVGAGTQPGAGTPSVMMSAKMTARLIAQDFKVANEIVNAQPEPKLTYR
>NC_019745.1|WP_015188417.1|2261437_2262223_+|YdcF-family-protein
MFLYLSKLLPLFFYPLGLACILIIFALITLWKKPRQASTALTIALVVLLLASNGWVSRSLVRSLEFQNIPQQLPNADAIVVLGGATKPAFPPRPSVDLSEESDRMFYAAQLYHQKKAPFVILSGGRIDWSGAGPSESADMAIIMQQLGVPESAIIQEPDSLNTYENAVNVKKILRSRQFNQVLLVTSAMHMPRSLAIFNKLKISAIPAPTDFLASGDMQYISNSSEAALLNLLPEAERLYQSTRALKEYVGLVVYRLRGWL
>NC_019745.1|WP_041919048.1|2262415_2262643_+|hypothetical-protein
MANQFHYIIPLLPPETQEIFATYQATRQFYHEVQIRTELQQYCDWYFTTAECHRQELEQMRSEINIFSWFRRARS
>NC_019745.1|WP_015188419.1|2262682_2262907_-|ferredoxin-thioredoxin-reductase-subunit-alpha
MKVGDRVRVKESVIVYHHPEHRGEPFDIKGLEGEIVSFANEWQGKPISANLPIQVQFTKKFKAHLRETEIEVLS

Crispr_ID: NC_019745_6

• CRISPR_ID: NC_019745_6
• CRISPR_location: 3442926-3446127
• CRISPR_type: Unclear
• Repeat_type: I-A,I-B,II-B
• Spacer_info: 44 spacers
• Cas_protein_info: cas2,cas1,cas7,cas8b3,cas3,cas6,WYL

Consensus repeat of NC_019745_6

Consensus_repeat	Method
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	PILER-CR
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CRISPRCasFinder
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CRT

spacers of NC_019745_6

>6.1|3442962|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATA
>6.2|3443035|38|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCT
>6.3|3443109|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGG
>6.4|3443180|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GCTATATTTAATTCTTTTTTCACCCAATTACGAGC
>6.5|3443251|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGA
>6.6|3443323|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ATCATCAATTTCCAAAACAGCACAGACATCCTTAG
>6.7|3443394|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGT
>6.8|3443466|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCT
>6.9|3443539|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTT
>6.10|3443610|41|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACAT
>6.11|3443687|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGC
>6.12|3443759|34|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ACGCACGCGGGATTGGTGGGCGTTTATTGCAGCA
>6.13|3443829|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGC
>6.14|3443900|38|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTA
>6.15|3443974|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TGATAGTAAATACGCCTTAGAAGTTGCAAAATGTG
>6.16|3444045|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCG
>6.17|3444116|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGA
>6.18|3444188|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCG
>6.19|3444260|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAA
>6.20|3444333|34|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TGTAAGGCGCGTTACACCATGAAATTCAACAGAT
>6.21|3444403|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAA
>6.22|3444475|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AAAACCGTAACACCATCAACCCAGTTATTCAAAGC
>6.23|3444546|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTA
>6.24|3444618|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ATCCAGATATCTGCGCCCAACGACTCAGCAATTTCT
>6.25|3444690|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
CGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAG
>6.26|3444761|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTG
>6.27|3444834|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACA
>6.28|3444906|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ACTACATGTGCGGTTACCGTAACGCAACGCTAACTCT
>6.29|3444979|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCG
>6.30|3445051|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AATGAAGATGAATGAGCAGCCAAATTCACGAGCGAT
>6.31|3445123|34|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ATATTCGTTACTGTTTAATTATTGTAGTAAGCTA
>6.32|3445193|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCT
>6.33|3445265|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TACCTAACCATTCCACGCGAAGACTTCGAGAAAAA
>6.34|3445336|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
CTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCT
>6.35|3445407|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TCTATAGGTTTGTAACTCATGGTCGTCTGAATGTT
>6.36|3445478|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
CTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCT
>6.37|3445550|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AAGATGAATTCCTAATTTACGTCGTAGATGAGGAGG
>6.38|3445622|39|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTG
>6.39|3445697|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTC
>6.40|3445769|34|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AGCGAGCAATCAAGTCGATTGACTTTTTAGCAGT
>6.41|3445839|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
CCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGC
>6.42|3445912|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GAGGAGTAGGTAAATCACTGCTCTCCTACGATATT
>6.43|3445983|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
CTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCT
>6.44|3446055|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT
GGAATTAGTACCGATTGCTAGCGATCGCTATGAGGAT

CRISPR arrays and Neighbor proteins around NC_019745_6

CRISPR arrays

The CRISPR arrays of NC_019745_6

>merge|NC_019745|6|3442926-3446127|PILER-CR,CRISPRCasFinder,CRT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGCTATATTTAATTCTTTTTTCACCCAATTACGAGCGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACATCATCAATTTCCAAAACAGCACAGACATCCTTAGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACATGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGCGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACACGCACGCGGGATTGGTGGGCGTTTATTGCAGCAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGCGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTGATAGTAAATACGCCTTAGAAGTTGCAAAATGTGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTGTAAGGCGCGTTACACCATGAAATTCAACAGATGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAAAACCGTAACACCATCAACCCAGTTATTCAAAGCGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACATCCAGATATCTGCGCCCAACGACTCAGCAATTTCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACCGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACACTACATGTGCGGTTACCGTAACGCAACGCTAACTCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAATGAAGATGAATGAGCAGCCAAATTCACGAGCGATGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACATATTCGTTACTGTTTAATTATTGTAGTAAGCTAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTACCTAACCATTCCACGCGAAGACTTCGAGAAAAAGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACCTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACTCTATAGGTTTGTAACTCATGGTCGTCTGAATGTTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACCTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAAGATGAATTCCTAATTTACGTCGTAGATGAGGAGGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTGGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTCGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACAGCGAGCAATCAAGTCGATTGACTTTTTAGCAGTGTGTTTTAACCTTAGATGCCACAAGGCTTTGATCACCCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGCGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACGAGGAGTAGGTAAATCACTGCTCTCCTACGATATTGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCACCTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCTGTGTTTTCACCTTAGATGCCACAAGGCGTTGATCACGGAATTAGTACCGATTGCTAGCGATCGCTATGAGGATGTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC

>NC_019745|6|2|3442926-3446127|PILER-CR
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCTATATTTAATTCTTTTTTCACCCAATTACGAGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATCATCAATTTCCAAAACAGCACAGACATCCTTAG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACGCACGCGGGATTGGTGGGCGTTTATTGCAGCA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGATAGTAAATACGCCTTAGAAGTTGCAAAATGTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGTAAGGCGCGTTACACCATGAAATTCAACAGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAAACCGTAACACCATCAACCCAGTTATTCAAAGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATCCAGATATCTGCGCCCAACGACTCAGCAATTTCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACTACATGTGCGGTTACCGTAACGCAACGCTAACTCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AATGAAGATGAATGAGCAGCCAAATTCACGAGCGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATATTCGTTACTGTTTAATTATTGTAGTAAGCTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TACCTAACCATTCCACGCGAAGACTTCGAGAAAAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TCTATAGGTTTGTAACTCATGGTCGTCTGAATGTT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAGATGAATTCCTAATTTACGTCGTAGATGAGGAGG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGCGAGCAATCAAGTCGATTGACTTTTTAGCAGT
GTGTTTTAACCTTAGATGCCACAAGGCTTTGATCAC	CCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GAGGAGTAGGTAAATCACTGCTCTCCTACGATATT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCT
GTGTTTTCACCTTAGATGCCACAAGGCGTTGATCAC	GGAATTAGTACCGATTGCTAGCGATCGCTATGAGGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC

>NC_019745|6|6|3442926-3446127|CRISPRCasFinder
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCTATATTTAATTCTTTTTTCACCCAATTACGAGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATCATCAATTTCCAAAACAGCACAGACATCCTTAG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACGCACGCGGGATTGGTGGGCGTTTATTGCAGCA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGATAGTAAATACGCCTTAGAAGTTGCAAAATGTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGTAAGGCGCGTTACACCATGAAATTCAACAGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAAACCGTAACACCATCAACCCAGTTATTCAAAGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATCCAGATATCTGCGCCCAACGACTCAGCAATTTCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACTACATGTGCGGTTACCGTAACGCAACGCTAACTCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AATGAAGATGAATGAGCAGCCAAATTCACGAGCGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATATTCGTTACTGTTTAATTATTGTAGTAAGCTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TACCTAACCATTCCACGCGAAGACTTCGAGAAAAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TCTATAGGTTTGTAACTCATGGTCGTCTGAATGTT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAGATGAATTCCTAATTTACGTCGTAGATGAGGAGG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGCGAGCAATCAAGTCGATTGACTTTTTAGCAGT
GTGTTTTAACCTTAGATGCCACAAGGCTTTGATCAC	CCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GAGGAGTAGGTAAATCACTGCTCTCCTACGATATT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCT
GTGTTTTCACCTTAGATGCCACAAGGCGTTGATCAC	GGAATTAGTACCGATTGCTAGCGATCGCTATGAGGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC

>NC_019745|6|2|3442926-3446127|CRT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACGGGCTTGCCTGTATCCTTGTCCAATGACATAGATA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTTGATTTTCTAACTCAAGCTCCCGAATGCGATCGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GGAACTAATCGCTATTTCGTTAGCGGAAGTCTTGG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCTATATTTAATTCTTTTTTCACCCAATTACGAGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TCGATAGCCGCGCCGCTCGCCATCAGCCGTTCAGGA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATCATCAATTTCCAAAACAGCACAGACATCCTTAG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTCTGATCCTGGAACGTATGGAAATCCGTTAAAGT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAGCTGTGCGCCAAAACTTCGGAAGTCTTCAGATGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GTGTAAGTCAGTTAGAATCTGACCTACAGCGCCTT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGTTTATTTCTAGCTGCACTAACTTTAGGTACCATCAACAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACCTTCCCTAGCTTGACTGCGCGTCGTAAAAATCGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACGCACGCGGGATTGGTGGGCGTTTATTGCAGCA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTACGTCGAAAGCGTGGTTTGACTGAGTAAACGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATACCGCTGTTGCGATTGGTGACGACGAAGTTACTCTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGATAGTAAATACGCCTTAGAAGTTGCAAAATGTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATTCAGGCAGCGGGGAGAATCAGAGCGAACAATCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGTCTCGTAATGGTGCGCGCGTTGAGTTTTTAAAGA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AATAGCGCTAGCGCGTCTTACACACGCGTCTAGGCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCATGATTGGGCTTGCTGAGGCTGCTGAGGATTTTAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGTAAGGCGCGTTACACCATGAAATTCAACAGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TGCTGGGAAGCTTTCTGCCCGTGTACGGATTGACAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAAACCGTAACACCATCAACCCAGTTATTCAAAGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GCAAACCAGATGCGATTGCGCGCTGATTTTAGCTTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATCCAGATATCTGCGCCCAACGACTCAGCAATTTCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CGGCGTGCCTTGCGGCTGTAGATTTTCACTGTGAG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTTTATCCTGCTTTTCTGATGGTGTGGCACTATACTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GTCGCGTTGTGGGAACTAGCAACAGCGCCACTAACA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ACTACATGTGCGGTTACCGTAACGCAACGCTAACTCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTGATGAGGAGATCGGATGGATTTCTAGTAGAAGCG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AATGAAGATGAATGAGCAGCCAAATTCACGAGCGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	ATATTCGTTACTGTTTAATTATTGTAGTAAGCTA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TTACGTGGGTCTAGTGCTTCTCCTTTGCCCAAACCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TACCTAACCATTCCACGCGAAGACTTCGAGAAAAA
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTAGCTGCATCAAAAAGTACGTCTGCACTAAAGCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	TCTATAGGTTTGTAACTCATGGTCGTCTGAATGTT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTTCCCAAAGTTCTTCTCTGAGTTCGGGCTTCTCCT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAGATGAATTCCTAATTTACGTCGTAGATGAGGAGG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGGATAATCAGCACTGGAGACTACCCAAATCAGAGTCTG
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AAAGTCTACAGCAGCCAAGCACGCTGCATAGGGTTC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	AGCGAGCAATCAAGTCGATTGACTTTTTAGCAGT
GTGTTTTAACCTTAGATGCCACAAGGCTTTGATCAC	CCTTAAACAACGTGCGCCAGCTATCAGGCTTACCTGC
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	GAGGAGTAGGTAAATCACTGCTCTCCTACGATATT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC	CTAAATCGGCCGTTTTTATCCTACTTCTTACAGTCT
GTGTTTTCACCTTAGATGCCACAAGGCGTTGATCAC	GGAATTAGTACCGATTGCTAGCGATCGCTATGAGGAT
GTGTTTTAACCTTAGATGCCACAAGGCGTTGATCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015189434.1|3433231_3434218_+|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl|CDD|379100
NC_019745.1|WP_015189447.1|3452121_3453057_-|N-methylglutamate-synthase-subunit-A	unknown	unknown	gnl|CDD|238888
NC_019745.1|WP_015189445.1|3449742_3451059_-|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl|CDD|239202
NC_019745.1|WP_015189437.1|3437262_3438948_+|type-I-MYXAN-CRISPR-associated-protein-Cmx8	cas8b3	mkCas0177_cas8b3_CAS-I-B	gnl|CDD|275206
NC_019745.1|WP_015189441.1|3442378_3442672_+|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|378256
NC_019745.1|WP_041919200.1|3453302_3454073_-|GntR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225099
NC_019745.1|WP_015189436.1|3434879_3437270_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|350688
NC_019745.1|WP_015189440.1|3440698_3442369_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274899
NC_019745.1|WP_015189438.1|3438975_3439866_+|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
NC_019745.1|WP_015189446.1|3451328_3452030_-|glutamate-synthase	unknown	unknown	gnl|CDD|223148
NC_019745.1|WP_015189443.1|3447102_3447525_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_041919197.1|3439875_3440574_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	unknown	unknown	gnl|CDD|274218
NC_019745.1|WP_015189450.1|3455841_3456192_+|S-layer-homology-domain-containing-protein	unknown	unknown	gnl|CDD|306825
NC_019745.1|WP_015189435.1|3434217_3434880_+|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl|CDD|370559
NC_019745.1|WP_015189442.1|3446274_3447093_-|MOSC-domain-containing-protein	unknown	unknown	gnl|CDD|225758
NC_019745.1|WP_015189451.1|3456267_3457644_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NC_019745.1|WP_015189433.1|3432057_3432729_+|haloacid-dehalogenase-type-II	unknown	unknown	gnl|CDD|319787
NC_019745.1|WP_015189449.1|3454232_3455435_+|FAD-binding-oxidoreductase	unknown	unknown	gnl|CDD|223737
NC_019745.1|WP_015189444.1|3447540_3448956_-|ammonium-transporter	unknown	unknown	gnl|CDD|223083
NC_019745.1|WP_015189432.1|3431384_3432065_+|GntR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224715

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019745.1|WP_015189434.1|3433231_3434218_+|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	9.1e-48	157.3	1.9
NC_019745.1|WP_015189441.1|3442378_3442672_+|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	4.6e-23	76.1	0.4
NC_019745.1|WP_015189437.1|3437262_3438948_+|type-I-MYXAN-CRISPR-associated-protein-Cmx8	cas8b3	mkCas0177_cas8b3_CAS-I-B	1.7e-217	718.1	6.1
NC_019745.1|WP_015189435.1|3434217_3434880_+|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	1.1e-74	245.3	0.0
NC_019745.1|WP_015189436.1|3434879_3437270_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	6.4e-49	161.6	0.0
NC_019745.1|WP_015189440.1|3440698_3442369_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.3e-92	305.0	0.0
NC_019745.1|WP_015189438.1|3438975_3439866_+|CRISPR-associated-autoregulator,-Cst2-family	cas7	cd09687_cas7_CAS-I-B	5.4e-24	79.6	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015189434.1|3433231_3434218_+|WYL-domain-containing-protein	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.63574e-46
NC_019745.1|WP_015189447.1|3452121_3453057_-|N-methylglutamate-synthase-subunit-A	gnl|CDD|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	6.3286e-61
NC_019745.1|WP_015189445.1|3449742_3451059_-|FMN-binding-glutamate-synthase-family-protein	gnl|CDD|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	2.85509e-150
NC_019745.1|WP_015189437.1|3437262_3438948_+|type-I-MYXAN-CRISPR-associated-protein-Cmx8	gnl|CDD|275206	TIGR04413, hypothetical_protein_LEP1GSC082_4029, CRISPR type MYXAN-associated protein Cmx8. Members of this family occur only in CRISPR/cas loci of the MYXAN type, but are present in a minority of such systems. This protein appears to replace the MYXAN system Cas8a1/Csx13 protein (TIGR03485/TIGR03486), compared to which it shows similar length and composition but only about 12 percent sequence identity.	0
NC_019745.1|WP_015189441.1|3442378_3442672_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	5.34605e-18
NC_019745.1|WP_041919200.1|3453302_3454073_-|GntR-family-transcriptional-regulator	gnl|CDD|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	4.89681e-58
NC_019745.1|WP_015189436.1|3434879_3437270_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.27312e-42
NC_019745.1|WP_015189440.1|3440698_3442369_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NC_019745.1|WP_015189438.1|3438975_3439866_+|CRISPR-associated-autoregulator,-Cst2-family	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	4.30902e-15
NC_019745.1|WP_015189446.1|3451328_3452030_-|glutamate-synthase	gnl|CDD|223148	COG0070, GltB, Glutamate synthase domain 3 [Amino acid transport and metabolism].	3.04698e-28
NC_019745.1|WP_041919197.1|3439875_3440574_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl|CDD|274218	TIGR02593, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5, N-terminal domain. This model represents a shared N-terminal domain, about 43 amino acids in length, common to a number of related protein families each of which is associated with a distinct subtype of CRISPR/cas system, where CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeat and Cas is an abbreviation for CRISPR-associated. Members of this family are widely distributed enough that we designated the family Cas5. Homology appears remote, or absent, between the more C-terminal regions different subfamilies of these proteins, which typically are 210 to 265 amino acids in total length. Cas5 proteins of six different CRISPR/cas subtypes so far defined are described by respective full-length models TIGR01868, TIGR01876, TIGR01895, TIGR01874, TIGR02586, and TIGR02592. The best characterized protein in this family is DevS or Myxococcus xanthus, a Cas protein that appears to participate in a species-specific developmental pathway.	5.48937e-07
NC_019745.1|WP_015189450.1|3455841_3456192_+|S-layer-homology-domain-containing-protein	gnl|CDD|306825	pfam00395, SLH, S-layer homology domain.	0.000165397
NC_019745.1|WP_015189435.1|3434217_3434880_+|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl|CDD|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	3.01652e-96
NC_019745.1|WP_015189442.1|3446274_3447093_-|MOSC-domain-containing-protein	gnl|CDD|225758	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only].	9.66829e-26
NC_019745.1|WP_015189451.1|3456267_3457644_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.16591e-101
NC_019745.1|WP_015189433.1|3432057_3432729_+|haloacid-dehalogenase-type-II	gnl|CDD|319787	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase. L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.10098e-57
NC_019745.1|WP_015189449.1|3454232_3455435_+|FAD-binding-oxidoreductase	gnl|CDD|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.06744e-57
NC_019745.1|WP_015189444.1|3447540_3448956_-|ammonium-transporter	gnl|CDD|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.59577e-63
NC_019745.1|WP_015189432.1|3431384_3432065_+|GntR-family-transcriptional-regulator	gnl|CDD|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.2937e-35

Protein sequences

>NC_019745.1|WP_015189441.1|3442378_3442672_+|CRISPR-associated-endonuclease-Cas2
MAELKNWYLVCYDIRCPKRWRKAYKLLEGYGERVQYSIFRCWLSQRMREKLRWELERVLTKEDDLILIRLSQQCVKDLPKYNRPNTWLLDEKGFRVI
>NC_019745.1|WP_015189440.1|3440698_3442369_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1
MHAIDLDQTITEAFPDTLRVCALHAFAYCPRLFYLEEVEELYTQDAAVFAGRQLHEKIEQQEDEEWLDLYLEDEILGLRGRVDALRTRDGQTIPYEHKRGRCYRDDRKPQAWESDKLQILAYCCLLEAALGITVSEGRIRYHADNVLIRVPLDEPGRQWVKDSIQQAKQLRKSAYRPPVTNNEHLCTRCSLSSVCLPEEARLAHNKEWHPLRLFPQDDEREVLHILEPGTRVGRTGEQLKISRRDQADEKVSVGQVSQVVLHSFAQISTQAVHFLAYKDVGIHFVSGGGRYIGSVDTRSGSIQRRIRQYQALSQSDFCLELARKLVNCRGEGQRKFLMRGKQKSKSDKAELEYAIAQMKAVLKQVPQVQSLESLLGIEGNLAALYFGTLPQVLASDTSDLLKFSGRNRRPPKDRFNALLSFGYSLLIKDVMNAILTVGLEPALGFYHQPRTQAPPLALDLMEIFRVPLVDLIVVTSINRNQWDVNTDFEVRGQQVWLSDRGRRKFISIYEQRKSESWKHPVTGYSLTYRRLLELEVRLLEKEWSGEGGLFGQLIVR
>NC_019745.1|WP_041919197.1|3439875_3440574_+|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MWLRIRAPFAAFRGFQAGVYRATSPIMPPSAVLGLVLNLAGIEMRDYTDYQNLLIRADVPCLKVAIATLPNSKSEICTLYQQLHSYPVGNSGKTDLKPRTHGAKYWITPVKREFLVGLDMVLGVQASKELLEEVQKGLKGELDRPRYGLPFAGDNNFLFDRIDILNEVPEAFWYIQMQPDDPPMRGSYRLTVAIDRADNSKTTSFLYAPVEVATSVPPERAWTWTPRKPVTV
>NC_019745.1|WP_015189438.1|3438975_3439866_+|CRISPR-associated-autoregulator,-Cst2-family
MKKNLFATILTYPAPSSNYRGESEENRTVLQKIAKGKQEYTVISPESMRNALREMLIKAGVPCNRTRLHDQDQLAVEFKEFPNAEKYADDFLFGFMVADNEAIRRHRNLPSKRDSVLRMNIAVALNPYRFDATFHQSPLNAGTSPWRNSATSALLHREVAHTAYQYPFALAYSDCKNKPEWTKALITAISQLSDVAGGHARSYYEMAPKSIIARLTPNLVAGYDTYGFNENGEFLELNRIKASDLPGDEFWIGGEIVRSMSPEKREYLENEGVRLYENPQKLLADLADEFLSSEAE
>NC_019745.1|WP_015189437.1|3437262_3438948_+|type-I-MYXAN-CRISPR-associated-protein-Cmx8
MVKTKTKQTKTVDVLTLDYQLAELPSSQHRVGLAGLVLILRWLERQPEFKEKVENGAICQLNCLDDRGATLELNRAGLEALFDEIYAASAEEQERNQLLKNQRTKEVIQPLREEEREETDPKTKKKKVKKVYIYPVVVPKGSFLSDPSYDNSADSNGLWVKLWRDMVWNILRGVPATRKPFEARAEGQYNEDAIKVWQQLIQPEEFTVDLPSTYFLGAQANNAENTPFKDRARFQFLLHFWSFAAQIYVPEVIDNEGKRNFVGYAIAIPDVAYLAWFCDELQDILQHRSIEKSGYRPRDCIVDLAIESALDMMKRLRDRLTQTIGEKTGIASTVFGIDVVHTEKQGNNIRLLSVTRLDPEEAMLDRYVQIRNNYWSPLFRKQRLLNLVNHSPWYVGFDSLLCTLPYEQITKNDYFKHDVYEAFKNENTMTEKNASVTEINIEQLVFRLVKEYVRAKLKSKYGLEWKKEWEISGFASDEQKEARNKSGYGNYAEKKEKIAKSAFLDVRSRTESIDFINYFVSSLCSVPQHMKSEDYVSLTKALYDDTERIRTLTLLALSANS
>NC_019745.1|WP_015189436.1|3434879_3437270_+|CRISPR-associated-helicase/endonuclease-Cas3
MSKIPEKLLAKSKPQVTLEAHLRDTEKAAELIFRLTGRWGRNWCRFFGIEGEESQKKFLLNLRIAALFHDIGKANEDFYEAVKALGFKPQTLRHEHLSALVLCLPEVRIWLAQNSSLDIDVVTSAVLSHHLKASESQITIKGDREASQTLKNYRWCQPQSSKTSVVLYFQHGEVLRILNRIAEVAELGAIPSVPQIDWKPGSLWELAYRQGKQFGTNFKRELGDVKNQPRKSLLVAVKAGLIVADAAASGLVREGKDIEDWIEEVVHSESITHDDIANAIINPRIEQIKAKTGSFKLATFQKQIAKQGSKALLLAACGAGKTLGAWKWAEQQSREYEIGKVIFLYPTRGTATEGFRDYVGWSPATDAALVTGTARYELEAMQENPTEAIEGKDFQADERLYALGFWSRRYFSATVDQFLSFLEHSYQSICLLPVLADSAVIIDEVHSFDRRMFDSLVSFLENFDIPVLCMTATLPPSRRERLKKAGLTVYPTTADRDLLPDLEEKESHPRYYLEPVDKFAAAFEKAVTAYQQGKRVLWVVNTVDRCLAIAQKLNAINTQVLTYHSRFRLQDRQKVHAKTVAAFALQKDPDARKPAIAVTTQVCEMSLDLDADVLITEIAPIPSLVQRFGRANRHLARGLDFQAKLHTYTPPNHLPYQKDELEDAKQFLQSLSHKTVSQRQFAEALEHYSPPEREADGSAQFLESGYYAIPSNFRDTDDFSVPCILDQDLDTVKAILDSPAKHQKERFIINVPKKWANSKDSYPSWLPKYLSVATWEGHYNEDSGFITKSLEEVELG
>NC_019745.1|WP_015189435.1|3434217_3434880_+|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MLAMTEKLRDNPSASLPYINLSFSVTGESFPADHGYGLYSALTHWNHNLHHLEGLSIQTIAGIPDKQGKIYLTERSRLVIRLPYDQVPLVYGLAGKTLTIGNHTIHLGIPQIYRLQPTSKLKARIVTIKGYQEPEAFLEAALRQLEDLEIKGTIVVPVNEKGEAERKTIKIKRFTLVGFKLGVFDLSDEDSLKLQIYGLGGKRRMGCGVFVPFTNKRRII
>NC_019745.1|WP_015189434.1|3433231_3434218_+|WYL-domain-containing-protein
MSRHLERLLHIDHLLRSSCGQTSVSLAQALEVSDRTIRDDLAFLRDRYHAPLQYRKKTGWRYTDLAWRLPSISLSKGELFALTLGARMLEAYAGSAYEQELRSSIERLSERLPEQTWIDLQQLADERIIFRAGAQMVNLNPLIWQQLLEACRTSKRVWIRYYAATRLEESERVIDPYLLHIYRATNPYVIGFCHKRQEIRWFRIDRIQELQLLDETFERKSNFDPKTYLQKIFQHEVGGHPVSVVIWFDASAAPFIRERRWHVTQEIEEHPDGSLTLHLTTSGLNDLKRWVLGYGKGAVVQAPTELVELVKAEVKEMRERYLNVGDNN
>NC_019745.1|WP_015189433.1|3432057_3432729_+|haloacid-dehalogenase-type-II
MINFNDYQALTFDCYGTLIDWENGILGAMKPILSAHNVKIDDREIIKCYSEIEPVIQQQGYIKYREVLKKVVQKFGDRFDFTPTAPEINSLPESLQNWQPFPDTIEALQLLKQKYKLVIISNIDDDLFAATAKHLKVEFDEIISAEQAKSYKPSLNNFKLAFSRIGIPQAQVLHVAASLYHDIVPARSLGLTTVWVNRNAEASSNLPDLEVPDLRSLVSLIDI
>NC_019745.1|WP_015189432.1|3431384_3432065_+|GntR-family-transcriptional-regulator
MKRRSQLTIVHRSLEVQATDAIREEILSGVLPPGSRLLEIELSERLNLSRGTIRSALQQLTYEGLVEQFPYRGCAVSGLSSRDAWELYTLRNALEGLAAKLLAESITPAKTRILNTQLQHLVKAAKRGKWQDLADTDFALHKTIIELSEHQRLQQQYKIVEQQIRLYIVSCNAIHPNLDEIRLQHESLVDAICSGNAEVAEQIAQEHNGDGQALIAHLKALEQKND
>NC_019745.1|WP_015189442.1|3446274_3447093_-|MOSC-domain-containing-protein
MRAASVVGSVVSLWRYPVKSMMGEKLDATAISEQGIVGDRTYALIESATGKVVSAKNPRKWAKLFDFHAAFVDLPTTTHIPSVEITLPDGTKLSSEQENINELLSSVLGREVTLASTAPPEPILEEYWLDMDGLPHRETVTDEKIPASTFFDLATLHLLTTATIERLQQLTPSGRFEMRRFRPNIEIASTTSNNFIENDWIDRIVAIGEEVQIKITGFCPRCVMTTLPQGDLPNDPSILKTAVQHNNGNVGVYASVVQGGTIRCGDLIQILD
>NC_019745.1|WP_015189443.1|3447102_3447525_-|hypothetical-protein
MSSPFSNPKEFLEAEGPIYTFGNNQFIITFLLIVSGLIFLWFIYASYKIKSSKPLAKNPVALSLLIAASAFSLAGTAYNSTADKIHQPTRRESRIISSKKQQWQLPITLIGIVASGSLLQRRSKNRWRKRIKTTNRNKYQ
>NC_019745.1|WP_015189444.1|3447540_3448956_-|ammonium-transporter
MNAEAQEFLGTFVSESYYFYASVFMLLIHAGFLAYEGGASRTKNVLATMVKNLLTLSSVGLAFFFFGWWVYNAFPLFPVSGGILGPWTNPATNDTVKAAMAVVETSYPWSPALAPNTADHLTGVFFFAFALFAMTTASILSGALIERVKIGAYIILSIVLGSFTWVLAAAWGWNPFGWFYTAFGYHDFGCSAVVHGVSGFFTLGVLLNLGPRIGKYDERGNSRPILPHNLPLTMVGLMLIFVGFYAFLAACLIFLPGYTRETTIYGTPMTLASIGVNTTLALAAGIIGAYISSKADPFFTISGGLAGIISVGAGMDLYHPTVVIILAFFGAFLMPKIALFIESIGIDDAVGAFGVHGFCGLLGSLAVGVLATGYPQGEGVPVTGFIGQLIPTLICVIVLGFIPGYATSWLLKRLNLLRVSRDEEIAGLDIADLGVEGYPEYSMNWATATVAAQNCTEAVTGRLEPNPGMQE
>NC_019745.1|WP_015189445.1|3449742_3451059_-|FMN-binding-glutamate-synthase-family-protein
MDSEKKVLKTSSTYTPEAIAAIQERAELGRYIIRGYGALRNVPRFDDLVFLTTSLTRLPLEGYREKCTTKTFIGTRYAKRPMELEIPITIAGMSFGALSYNAKVALGRAATLLGTSTTTGDGGMLPAEREASSKLVYQCLPSRYGFNPTDLKKADAIEIVVGQGAKPGGGGLLLGQKVNKVVAGMRTLPEGVDQRSPCRHPDWIGPDDLRIKIEELREATDWEIPIYVKMGATRVKDDVKLAVKAGADAIVLDGMEGGTAATQSIFQEHTGIPTLPALVQAVEALQEIGVYGEVQLIISGGIRSGPDVAKALALGADAVSLGTATLIAMGCNKPVYIEDYHKLGTEPYHCHHCHTGMCPVGITTQDADLMQRLPVDEATTYVANYLQSLVMEVQSLARACGKSNVHNLEREDLVALTLEASAMAKLPLAGTDFIMGQS
>NC_019745.1|WP_015189446.1|3451328_3452030_-|glutamate-synthase
MHQTIFQQTRIDCTNLTTREINQKLKALASESIPTVKLLNPAGRHNLAVGITQNIAISIEGPVGYYCGGLSENINIEVFGDCGWSVGENLMSGNITIHGNASANAAASAHGGKICILGHAGPRAGISLKGATIIVTGNVGYGSAFMMQQGCMIVCGNAGANLADSIYDGTIFVGGEINSLGADAKLEPMNDADWQLLEQELSALSISARDYNFKKVVCAKQLYHFKAKDWANY
>NC_019745.1|WP_015189447.1|3452121_3453057_-|N-methylglutamate-synthase-subunit-A
MCGIAGIIYRQPELYKNLGNDLLRLIQPLETRGPDSCGVGVYGSATHQLKILLFAAEDVSWEEVKHWWEKQTKVIEFDAIANGRRIILDTTDKPLNLAQIKRHLAISFPQVHLMSTGQLLEIYKEVGTAENLFQKYQLNNFTGSHGIGHTRMATESIVDTYHSHPFTSAPDLCIVHNGQISNYYKLRFTLEKKGIVFETDNDSEAIAHYIRYQLLQGYSLEQSLQNLLNDIDGTYTFLVATTDKIALVRDKFAAKPAVIYETPEMVAIASEYRCFLNLPHYNPNAKISEPDAGEIKTWSTTNKPTPHLELV
>NC_019745.1|WP_041919200.1|3453302_3454073_-|GntR-family-transcriptional-regulator
MTSIVAVNSNLPLHLAISEKLREQILSDEYAPGEQLPSEHQLMLQFNVSRITVRRAIANLVNQGLVISHRGKGVFVKDRKKVTRSLSNPLIFFDEDMARQGSTASIHSLSFDTVVPSPKVCKQLQLEEGTPQVYCQKKVILTDQNPVAVDITYIPFDLGKTFATELQSSLIYPTLDSNGVAIERVETIIECTHATHEVSEYLDIPLGAPLLVNRYVAYTTGDKPVICGETLSRADTLCYSVTLTKQGTTIQVDKET
>NC_019745.1|WP_015189449.1|3454232_3455435_+|FAD-binding-oxidoreductase
MVETADIVVVGGGCIGASVALYLAQNHAGKVVLLEQKELANGASGKGIGIIRTHYTHPVLAELAYLSQQRFHNFKELYGGYDSGFNPCGYFVLVGESDVATLNAVVQMHQSMNIKVDLMDLQQVQAQIPHLNLNDVAAVAYEPHSGYGSPPQTTLAFAQRATDLGVEVLTHTPVKDIQLDAAGKIQGIMTTQGAIATRTVIDCVGPWARKFTQNLGLEFPVHPVVEHVVVVQRPVEFLQNHPVVSDLVNLCYSRSDTQQPLTRIGNSDPKYHPQFMLKDADDFHGQIYPQITEELHQKLIQRYPILEKGKVVEKYSGIWGVTPDYQPIIDHLNHIPGLYCAVGFSGHGYKLSPIIGELISQFILGDRSRIDKLNLFRFSRFQEGALITSPISYGKAKGLR
>NC_019745.1|WP_015189450.1|3455841_3456192_+|S-layer-homology-domain-containing-protein
MSKLIKTLIKGAIATPLIAASVYTSSALAQTPNTPAPSNNAQPGCLSGYPDGTFRGDRPVTRYEFAAGLNACLERVNQLIPNRENLATRAEFEALIQRQRELNAEIRELNGRVSDE
>NC_019745.1|WP_015189451.1|3456267_3457644_+|cytochrome-P450
MDNQILDGPSPSFIQRRINMLRWIFNPLAILEKRYQQYGDVYVVAKNVTPLVVYISNPEALQQIFSAPAGTFDSSGANRVLLPLLGDRSLILLDGVAHQRQRKLLMPPFHGDRLKAYGEIIRDITQQVISRWEVGKPFNVRASMQEISLRVILSAVFGLHQGDRFEELRKLLTRLLDAVGSPISSMLLFFPSLQKDWGVWSPWGRFLNLRSQIDQLIYAEITARRAADVQSDDILSLLLQARDEHDQPMTDRELRDELVTLLFAGHETTASALSWALYWIDHLPEVREKLLQELDTLPPDADPSAVVRLLYLNAVCCETLRIYPIAINTFPRIVRSPIEIMGYHFEPGTLLLPSVYLTHHREDLYPEPKRFKPERFLERQFSPYEYLPFGGGNRRCIGLAFAQFEMKLVLATILAQYDLQLATKTPIKPTRRGLTVAPSGNLRMVVKQVRVQKTPALV

Crispr_ID: NC_019745_7

• CRISPR_ID: NC_019745_7
• CRISPR_location: 3546270-3546388
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_7

Consensus_repeat	Method
AAACAAAGTCCACCTGCGTGGACTACACCTAAATCTTGAACT	CRISPRCasFinder

spacers of NC_019745_7

>7.1|3546312|35|NC_019745|CRISPRCasFinder
GTGGAGAATGCCTGACGAATAAATTCGCGGCTAAA

CRISPR arrays and Neighbor proteins around NC_019745_7

CRISPR arrays

The CRISPR arrays of NC_019745_7

>merge|NC_019745|7|3546270-3546388|CRISPRCasFinder
AAACAAAGTCCACCTGCGTGGACTACACCTAAATCTTGAACTGTGGAGAATGCCTGACGAATAAATTCGCGGCTAAAAAACAAAGTCCACCTGCGTGGACTACACCTAAATCTTAAACT

>NC_019745|7|7|3546270-3546388|CRISPRCasFinder
AAACAAAGTCCACCTGCGTGGACTACACCTAAATCTTGAACT	GTGGAGAATGCCTGACGAATAAATTCGCGGCTAAA
AAACAAAGTCCACCTGCGTGGACTACACCTAAATCTTAAACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015189560.1|3552740_3553637_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NC_019745.1|WP_015189553.1|3544734_3546213_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|143404
NC_019745.1|WP_015189563.1|3557080_3558160_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl|CDD|133463
NC_019745.1|WP_015189545.1|3536456_3537890_-|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235798
NC_019745.1|WP_081588073.1|3539487_3539898_+|magnesium-transporter	unknown	unknown	gnl|CDD|225148
NC_019745.1|WP_015189558.1|3550594_3551644_-|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|236898
NC_019745.1|WP_015189556.1|3547418_3548195_-|DUF1028-domain-containing-protein	unknown	unknown	gnl|CDD|377639
NC_019745.1|WP_015189546.1|3538415_3538916_+|hypothetical-protein	unknown	unknown	gnl|CDD|378504
NC_019745.1|WP_015189551.1|3543477_3543678_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015189549.1|3540969_3542007_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015189548.1|3540229_3540586_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015189555.1|3547198_3547417_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015189550.1|3542036_3543032_+|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|224012
NC_019745.1|WP_041918651.1|3551662_3552673_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223521
NC_019745.1|WP_015189557.1|3548470_3550507_+|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl|CDD|132152
NC_019745.1|WP_015189552.1|3544025_3544595_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015189562.1|3554695_3556351_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173853
NC_019745.1|WP_015189554.1|3546409_3546967_-|DUF1499-domain-containing-protein	unknown	unknown	gnl|CDD|226854
NC_019745.1|WP_081588109.1|3539191_3539542_+|hypothetical-protein	unknown	unknown	gnl|CDD|214915
NC_019745.1|WP_015189561.1|3553636_3554560_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015189560.1|3552740_3553637_-|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.78275e-108
NC_019745.1|WP_015189553.1|3544734_3546213_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl|CDD|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NC_019745.1|WP_015189563.1|3557080_3558160_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl|CDD|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	5.02658e-75
NC_019745.1|WP_015189545.1|3536456_3537890_-|dihydrolipoyl-dehydrogenase	gnl|CDD|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NC_019745.1|WP_081588073.1|3539487_3539898_+|magnesium-transporter	gnl|CDD|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	8.77258e-25
NC_019745.1|WP_015189558.1|3550594_3551644_-|dipeptide-ABC-transporter-ATP-binding-protein	gnl|CDD|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.68601e-155
NC_019745.1|WP_015189556.1|3547418_3548195_-|DUF1028-domain-containing-protein	gnl|CDD|377639	pfam06267, DUF1028, Family of unknown function (DUF1028). Family of bacterial and archaeal proteins with unknown function. Some members are associated with a C-terminal peptidoglycan binding domain. So perhaps this could be an enzyme involved in peptidoglycan metabolism.	4.71684e-103
NC_019745.1|WP_015189546.1|3538415_3538916_+|hypothetical-protein	gnl|CDD|378504	pfam10882, bPH_5, Bacterial PH domain. This family of proteins with unknown function appear to be related to bacterial PH domains. This family was formerly known as DUF2679.	3.79053e-11
NC_019745.1|WP_041918651.1|3551662_3552673_-|ABC-transporter-ATP-binding-protein	gnl|CDD|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
NC_019745.1|WP_015189557.1|3548470_3550507_+|asparagine-synthase-(glutamine-hydrolyzing)	gnl|CDD|132152	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.	4.05498e-117
NC_019745.1|WP_015189550.1|3542036_3543032_+|UDP-glucose-4-epimerase-GalE	gnl|CDD|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	0
NC_019745.1|WP_015189562.1|3554695_3556351_-|ABC-transporter-substrate-binding-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.79856e-141
NC_019745.1|WP_015189554.1|3546409_3546967_-|DUF1499-domain-containing-protein	gnl|CDD|226854	COG4446, COG4446, Uncharacterized protein conserved in bacteria [Function unknown].	7.38885e-54
NC_019745.1|WP_081588109.1|3539191_3539542_+|hypothetical-protein	gnl|CDD|214915	smart00924, MgtE_N, MgtE intracellular N domain. This region is the integral membrane part of the eubacterial MgtE family of magnesium transporters. It is presumed to be an intracellular domain, that may be involved in magnesium binding.	5.31157e-09
NC_019745.1|WP_015189561.1|3553636_3554560_-|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.27709e-125

Protein sequences

>NC_019745.1|WP_015189553.1|3544734_3546213_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MSCTTVLQNYINGEWCDSSATAYLDVTNPATAEILAKVPLGTATDVDQAATAAATAFNTWRRTPAGERVQYLFKLKTLLEENFADLAATITQECGKTLAESKGELQRAIENVEVACGIPILIQGYNSEDIAKGIDEILIRQPVGVAAVIAPFNFPGMIPFWFMPYAIACGNTYIIKPSEKVPLTMQKVMDLLAQTGIPKGVVNLVNGAKEVVDAILDHPAIRAISFVGSTPVARYVYSRATANGKRAQCQGGAKNPVIVLPDADMEMTTRIVADSAFGCAGQRCLAASLAITVGKARQTFTDAIADAASTRVVGYGLDDKVQMGPVITAESQARIEQLIQQGIAEGATPLVDGRQAKIADYPQGYFIRPTLLQNIEPTSKIAQTEVFGPVLGLIHLDTVDEAIAFVNRGEYGNMACLFTSSGAAARKFRYEAEVGNIGINIGVAAPMAFFPFSGWKESFFGDLHGQGHHAIEFFTQTKVVVERWFQDWSRQF
>NC_019745.1|WP_015189552.1|3544025_3544595_+|hypothetical-protein
MDKKKVLEVQEIKLAILESFPPQLSITAIGTVPTQGWKNAELIPYVYIQPPIDGIYEFDFVAEPPEGIVAPALASIQANFRLETIPTNLRGVKVYASSNSQVALLETSGKERTICVKGVLTDEGVECQTLRTADGELYTLVGNLKEFQVGDEVYVAGTVAEFSFCLQGITIVVNWISKSAPKCSLPVSV
>NC_019745.1|WP_015189551.1|3543477_3543678_+|hypothetical-protein
MPNHYSILDDQNQVYGEWHGHLHYTLMYQSREKAEIVAREHHMLGYKIVPSEAAVRYSESRYSEHK
>NC_019745.1|WP_015189550.1|3542036_3543032_+|UDP-glucose-4-epimerase-GalE
MENPTILITGGAGYIGTHTVLALQEAGYSVLILDNLVYGHRDLVEKVLKAELICGNICDRPLLDQIFAQRSIEAVIHFAAYTYVNESVSDPFKYYQNNVLGSLTLLEAMLQAGVNKIVFSSTCATYGIPQQIPIPEEHPQNPINPYGATKLMVEKILLDFDRAYQLRSVCFRYFNAAGADKLGRLGEDRTPETHLIPLVLLTALGKREKVFIFGTDYDTPDGTCIRDYIHVIDLAHAHVLGLNYLLQGGETEIFNLGNGNGFSVQQVIDTAISITKRSFPVVKTERRTGDPPILVGNYEKVQRVLGWKPAYSKLEEMIKDAWRWHQRRHSD
>NC_019745.1|WP_015189549.1|3540969_3542007_+|hypothetical-protein
MSSVESAILPTREMQTGLVHFLTCSKIVCNSGYIYSWINPNHPGFVYPEAMGLYLTLVSQLSLQRNYRYLAEQAHAVANSLQHLTSPLGGIGKNEKLYLFDTCMAVNGLLTYKKYLNGYVNPTVVADMSRFIMKMAQQRLAVVADNGSLLEIQPHWSSVFGASMLKTVIALDALAVETGEHYFSDLALEIAEEVVRECYSDGVFHVFPETTIVYCHAHCYALEGLLYLHSRGYLEATEILSAGAQSLQRWQNSDGSLFNWYNAPSRELCKVCDATAQALRIWIAVDRDRFAEAINKGFTFLLSLRSPDFGLYYCDRSLDVNSWASIFATQAMDWSLNGVQSDCIV
>NC_019745.1|WP_015189548.1|3540229_3540586_+|hypothetical-protein
MRIQSSALVHLGFGKYVRSDQVTAVIPIEEERGPGRRTFIHLQGHTDPIVASRAEDSIVRDLVQEPREVTQSRQQQEILHDLLMDLSNVNPTVRRIVRDEGGLDLERLEQRIREVVEE
>NC_019745.1|WP_081588073.1|3539487_3539898_+|magnesium-transporter
MPIVSNTSGNVAIQALSVTLRGLGVGEVVPKDTLKIVCKEILADLSTALALSLALGLLSLIWSPPQKQWIALVAAMVMAINVFVAATLGTLLTMGLKRINPDPALIRGPLLTTVLDAVGFLTFLSLVSIALKIVRC
>NC_019745.1|WP_081588109.1|3539191_3539542_+|hypothetical-protein
MNGKCEFIRYYITKSTSVNLLIKTLFECTFVPEQRAIAFCLLNKAHAIDVFGYLPPKVQEELINSLHDTQVVQIVKAMRQSRSRLFNRSFLSSPFWQSSCQLYLTPAAMLQFKHYL
>NC_019745.1|WP_015189546.1|3538415_3538916_+|hypothetical-protein
MNEVFKAPWAISLIAITIVVSAILLGIVLMGLLTGPRSDIAWIVAMVVIPLVILLISVFFSIRGYAIADNTLYIQRLGWNTKVDLKNLITADVNPQAMRNSIRKWGNGGLFSFSGKYYNRKLGNYEAYATDLTKAVILKFRDRTIVVTPEHPERFANQVLATMDKG
>NC_019745.1|WP_015189545.1|3536456_3537890_-|dihydrolipoyl-dehydrogenase
MSQEAFDYDLVIIGAGVGGHGAALHAVSCGLKTAIVEAADMGGTCVNRGCIPSKALLAAAGRVRELRNAHHLKALGIHVGDVAFDRAAIADHANNLVSKIQGDLTNSLKRLGVDIIRGWGKVAGQQKVAIATDNGEKTVTAKDIILSPGSVPFVPPGIEVDGKTVFTSDQGVKLESLPDWVAIIGSGYIGLEFSDVYSALGCEITMIEALDQLMPGFDRDIAKLAERILITPRDIETYVGIYAKRVIPGSPVVIELADFKTKEDVDIIEVDACLVATGRIPVTQNLGLDSVGVELDRRNFIPVDDRMAVLSAGEPVPHLWAIGDANGKMMLAHAASAQGIVAVENICGKHQEIDYRSIPAAAFTHPEISYVGMTETAAKDMGKEQGFEVGAVRTYFKGNSKALAEGEADGIAKVVYRKDTGEVLGVHIIGMHASDLIHEASAAIANRQSVHSLAHLVHAHPTLSEVLDEAYKRAIAS
>NC_019745.1|WP_015189554.1|3546409_3546967_-|DUF1499-domain-containing-protein
MSTVETKSSSVFQRVLFTFIALLFVTFCALGTKIAFSGEPQLFAGTRPDNLGVHAGELAPCPRTPNCVSSQSQDTAHQIAPLTYNSTDQEAMARLKTVLQSFRRVKAIAQSENYIYSEFTIPVVGFVDDVEFLLDKDAKVIHVRSASRLGEGDLGVNRRRVETIRTKFNESAMVDASDSLRGYIS
>NC_019745.1|WP_015189555.1|3547198_3547417_+|hypothetical-protein
MPLTHLVFLAIGLGLVWVSIKFKDDVYRLATAISGAILIVWGFALTPLQFQLPIEALVLILVFPICLRCLRE
>NC_019745.1|WP_015189556.1|3547418_3548195_-|DUF1028-domain-containing-protein
MTFSIVAWDPSTQMTGVAVATKHLAVGALVPHAKATIGAIATQAQTNPLLGIWGIQLLEQRAISEGTLDEISVEDIIYLLLKDDKDRDHRQLHLVDHNGHTAAWTGKECIDWAGHFTFPYFSVAGNMLVGEQTLLAMAEAYQAKEGMEFSERLLQALEAGEAAGGDKRGRQSAAIYVVNQDVYPYLDLRVDHHHNPIAELRYLFEESRKDYYQMFRQTMPTIHPRTTEPISLNPAPWSGSTKAQPQKSVSTTDAPLSA
>NC_019745.1|WP_015189557.1|3548470_3550507_+|asparagine-synthase-(glutamine-hydrolyzing)
MCGIGGVMHHDPARPVNPDVLVAMAAIQYHRGPDGFGVKIMSDRGVGFTHARLSIIDLNPERGRQPFVSADGQYMIAHNGEFYDYKRIRADLTSLGYRFRSKSDTELTMHLSDRYGLEGALPHLRGEFAFALYERSKDRLTLVRDRFGVKPLYWTMTPEGLVFGSEIKVLFAHPAVQRRFSSEGLYHQLMQLIVPGTSAFEGIYAVEPGQMVIVERHDGQLQVKTKQYWDLNFPRQSERGQRLTDEEYIEELRSRFIEAVQLRLEADVPVACYLSGGIDSCTIMGIAAASQQSPVKAFTIGFDDRDYDETAIAREMAQATGADQDVLMVDGNQLYDHFARTIWHTERSIYNTFTVAKLLMSEHVNKAGYKVVVTGEGSDELFAGYPQLRLDMILHGMDDASPEERADLEDWLAESNRLFKGNLLAEKALDDPALTNLVGFTPSCLQSWLSASAYVPSLLHPDRRAATQNYSPGEAVAHALDREQIEGRHPLDKVQYIWIKTQFESQVLGWAGDRVDMANSMEARPPFLDHPLVEFAVTLPQNMRLRGRKDKYILRETMRELLPKALYERQKFAFMAPPSHTDPVKQRAMQALSATYLSKQAIEEAGLLDAAGVQKILQRHGDANTPVSDRVQLDAIINHMLSVQMLHKHFVGNDVPVVARDRAQERGWYAKDQLVVVT
>NC_019745.1|WP_015189558.1|3550594_3551644_-|dipeptide-ABC-transporter-ATP-binding-protein
MVQPQTSTVQTRQQNDTLLRVRDLKVHFPILRGLILQRQVGAVKAVDGLSFDIKRGETLGLVGESGCGKSTTGRAILQIEPPSAGHVYLEETELTALSGEPLRQMRQRMQMVFQDPYASLNPRMTIGDVISEPLEIFGLAAGREKQARVQHLLAVVGLSPEFTYRYPHEFSGGQRQRVALARALAVNPDFLVCDEPIAALDVSVQAQVINLVQSLQRELGLTYLFIAHDLSVVRHISDRIAVMYLGKIVELADRVSLYENPLHPYTQALLSAIPIPDPTVEAKRQRIVLEGDVPSPTNPPSGCRFHTRCPWAIERCHQIEPEFRDVGDGHYVACHLVDASGNFDPALGE
>NC_019745.1|WP_041918651.1|3551662_3552673_-|ABC-transporter-ATP-binding-protein
MARLLDVQNLKTRFFTQNGVVHAVNDVSFHVNAQETVGIVGESGSGKSITMLSAMRLIPSPPGKIVGGEVMFQGRDLLKLSVREMRSLRGNRLSMIFQDPMTSLNPVLRVEKQMTEAIQLHLGMARAEAKARAVELLEQVGIPGARDRIRNYPHQFSGGMRQRVMIAMGLACNPDLLIADEPTTALDVTIQAQIVEIVKQLKEERGMAVIWITHDLSLLAGLADRILVMYAGQIVEQAPLHALYHHPRHPYTIGLLQSIPRLDEQRQEHLKSIDGLPPSLVNYPQGCPFAPRCEFAIAKCHSEDPPLEPVGVNHQVACWVKPEGAEVLQASQSATA
>NC_019745.1|WP_015189560.1|3552740_3553637_-|ABC-transporter-permease
MTQQITTPTPPVAPLPSKNREFRRFLQVLFRSPGAKIGGFILLVTTIVAIFAPAIAPFDPLEMGVGSTLQPPSAEHWFGTDDFGRDLFSRIVYGSRLTLRIGLVAVFISMTAGVLLGMVAGYAGGWVEAVLMRGVDVLFSFTETLIALAAVAVLGPSLTNATIAVGISSIPFYARVTYGAVLVEKNKEYFKAAQAVGAKHFRLIFRHILPNILSPIIVVATVGVSVAVLSASALSFLGLGAQPPSPEWGAILAAGRDYFRRAPWVTTFPGLAIAITVLGFNLLGDGLREALDPQQRRS
>NC_019745.1|WP_015189561.1|3553636_3554560_-|ABC-transporter-permease
MTRYFIKRLLGGLFTIWMTTIAVTLLIHLVPGDPVQIMYAQSQSTTPEQIEQIRRNLGLDRPIYEQYIMYMGRVLQGDFGTTIRGNQPVLDLLLVRLPNTLLLAVTSLIITMVVGVTAGFFAAYKRGTWIDTTLMTGAIVGISVPSFWLGLMLISIFSVRLGWFPVSGTNLNNLVLPALTLGLANAASVSRLTRSSMLDVLSQDYMRTARAKGLAETLVLSRHAFRNGMINVVNMLGLQFTYMMGGAIVVENVFAWNGIGRLAIQSIFQRDYPTIQGFILIFATVVVIVSIVLDLLYAWIDPRITYN
>NC_019745.1|WP_015189562.1|3554695_3556351_-|ABC-transporter-substrate-binding-protein
MFWQFKSRKETARLRGAQRQRRSLLGAALTALLVSACGNNQQTATSPSPGTATSPTEGGTLVWARYGDADSLDPHRTTTTLSWQIFDQIYDTLLAFNDSGEIVPNLASEWQVSDDGREVTFVLNERITCHDGTPFDANDVKYTADRAINAQNPSVTRGAWGPIESVDVVNPQTVRFRFQTPFAAFVSFMADPFASMICDSNQEFGDQFGVSRAVGTGPWQLVSWTRGDEIVLDKNPDYVRYGRPVQNEGAPYLDRLVVRQIPEAQTRLAGLQTGEVQLIVNPPLDDLDAVRNDANLELHVAENTGQNFFFEFTVSRPPFNDIRARQAVAHAIDVDAALRVAFDEGLVQRERCPISRGVFGNDQEFCAKYGYEHNPDRARQLLSEMGYGANRPMEVILMTSTGDNRERMVQVFQSQLAQVGINAKIETMDIGTLNARVKQENERTSGISTFDMMDWAWFDPDILYQLWHSPGAYSGYQSPELDKLLERTRTTVDATQRREAVNDVMEYLLSNAVHIPLYTPGSLWVYATRSQVQGFKIGPFNRPVFNDVRLQ
>NC_019745.1|WP_015189563.1|3557080_3558160_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MNLYGFLQSLGIANPSGTGWLAVIFTFLLAWVVTWRLTPPVRSFALQVGWADQPNERRLNREPLPNAGGLVIYFGVLAALVLATLLRPIVIEGVLAEVLTILLGGSILVLVGFIDDQFGLPPWVRLFTQILTALLLISSGIKIEAPLGTPVDSLLAICLTVLWVVGITNAINLMDGMDGLAGGVSFITAMSLLAVSAQFETRAAATLLLAALGGGALGFLRHNFHPSRIIMGDAGAYFFGYVLAATTILGNLKVTTVFALVPPVLFLLLPVIDTTQVFVLRLMAGKNPLSNPGKDHLHHRLLAWGFSQRHTALTLWTGTIVSNWLAMQLQGMSAIPALVTIASIIALLSFTIWRRMRSL

Crispr_ID: NC_019745_8

• CRISPR_ID: NC_019745_8
• CRISPR_location: 4591331-4591458
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_8

Consensus_repeat	Method
CGCTAGGAGTGTTCCTGCTGACAAAATTGGTAAATTACTCCCTGCAAA	CRISPRCasFinder

spacers of NC_019745_8

>8.1|4591379|32|NC_019745|CRISPRCasFinder
TGCTCCTCTCGTTACTGTAGCGAAGACAAGCA

CRISPR arrays and Neighbor proteins around NC_019745_8

CRISPR arrays

The CRISPR arrays of NC_019745_8

>merge|NC_019745|8|4591331-4591458|CRISPRCasFinder
CGCTAGGAGTGTTCCTGCTGACAAAATTGGTAAATTACTCCCTGCAAATGCTCCTCTCGTTACTGTAGCGAAGACAAGCACGCTAGGAGTGTTCCTGCTGACAAAATTGGTAAATTACTCCCTGCAAA

>NC_019745|8|8|4591331-4591458|CRISPRCasFinder
CGCTAGGAGTGTTCCTGCTGACAAAATTGGTAAATTACTCCCTGCAAA	TGCTCCTCTCGTTACTGTAGCGAAGACAAGCA
CGCTAGGAGTGTTCCTGCTGACAAAATTGGTAAATTACTCCCTGCAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015190450.1|4601797_4603645_-|response-regulator	unknown	unknown	gnl|CDD|274362
NC_019745.1|WP_015190437.1|4586107_4586497_-|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl|CDD|197393
NC_019745.1|WP_015190432.1|4581603_4581918_+|DUF3067-family-protein	unknown	unknown	gnl|CDD|371443
NC_019745.1|WP_015190444.1|4592324_4593008_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190449.1|4599500_4601738_-|PAS-domain-containing-protein	unknown	unknown	gnl|CDD|226702
NC_019745.1|WP_081588083.1|4594001_4596776_-|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|274362
NC_019745.1|WP_015190445.1|4593037_4593856_-|ATP-dependent-sacrificial-sulfur-transferase-LarE	unknown	unknown	gnl|CDD|224522
NC_019745.1|WP_015190438.1|4586754_4588011_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270451
NC_019745.1|WP_015190433.1|4581945_4582278_-|tRNA-binding-protein	unknown	unknown	gnl|CDD|182232
NC_019745.1|WP_015190435.1|4583205_4583655_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190452.1|4605184_4605322_-|photosystem-one-PsaX	unknown	unknown	gnl|CDD|369686
NC_019745.1|WP_015190436.1|4583841_4586025_-|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl|CDD|381604
NC_019745.1|WP_015190434.1|4582274_4583096_-|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl|CDD|177084
NC_019745.1|WP_015190441.1|4590632_4591280_-|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NC_019745.1|WP_015190447.1|4596795_4599039_-|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|236848
NC_019745.1|WP_155824061.1|4599043_4599487_-|response-regulator	unknown	unknown	gnl|CDD|381108
NC_019745.1|WP_015190440.1|4589473_4590511_-|glucokinase	unknown	unknown	gnl|CDD|234716
NC_019745.1|WP_155824059.1|4588156_4589467_+|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270451
NC_019745.1|WP_041919386.1|4591808_4592039_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190451.1|4604163_4605033_+|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl|CDD|119324

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015190450.1|4601797_4603645_-|response-regulator	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.86755e-70
NC_019745.1|WP_015190437.1|4586107_4586497_-|metal-sensitive-transcriptional-regulator	gnl|CDD|197393	cd10158, CsoR-like_DUF156_1, Uncharacterized family 1; belongs to a superfamily containing the transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this family was previously known as part of DUF156. Uncharacterized family 1, belonging to a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family; however, a conserved Tyr and a Glu residue that facilitates allosteric regulation of DNA binding for CsoRs are poorly conserved.	2.82596e-33
NC_019745.1|WP_015190432.1|4581603_4581918_+|DUF3067-family-protein	gnl|CDD|371443	pfam11267, DUF3067, Domain of unknown function (DUF3067). This family of proteins found in plants and cyanobacteria has no known function. The structure of this domain has been solved by NMR for the alr2454 protein. The structure was determined to be a novel fold composed of four alpha helices and a sheet of three anti-parallel beta-strands.	1.01367e-56
NC_019745.1|WP_015190449.1|4599500_4601738_-|PAS-domain-containing-protein	gnl|CDD|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.10024e-54
NC_019745.1|WP_081588083.1|4594001_4596776_-|GAF-domain-containing-protein	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.06861e-59
NC_019745.1|WP_015190445.1|4593037_4593856_-|ATP-dependent-sacrificial-sulfur-transferase-LarE	gnl|CDD|224522	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only].	3.04829e-132
NC_019745.1|WP_015190433.1|4581945_4582278_-|tRNA-binding-protein	gnl|CDD|182232	PRK10089, PRK10089, chaperone CsaA.	1.15998e-61
NC_019745.1|WP_015190438.1|4586754_4588011_-|ABC-transporter-substrate-binding-protein	gnl|CDD|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.98942e-93
NC_019745.1|WP_015190452.1|4605184_4605322_-|photosystem-one-PsaX	gnl|CDD|369686	pfam08078, PsaX, PsaX family. This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus.	5.67619e-10
NC_019745.1|WP_015190436.1|4583841_4586025_-|transglycosylase-SLT-domain-containing-protein	gnl|CDD|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	2.86817e-66
NC_019745.1|WP_015190434.1|4582274_4583096_-|twin-arginine-translocase-subunit-TatC	gnl|CDD|177084	CHL00182, tatC, Sec-independent translocase component C; Provisional.	1.19131e-103
NC_019745.1|WP_015190441.1|4590632_4591280_-|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.12833e-31
NC_019745.1|WP_015190447.1|4596795_4599039_-|GAF-domain-containing-protein	gnl|CDD|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	7.05334e-60
NC_019745.1|WP_155824061.1|4599043_4599487_-|response-regulator	gnl|CDD|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.62216e-52
NC_019745.1|WP_015190440.1|4589473_4590511_-|glucokinase	gnl|CDD|234716	PRK00292, glk, glucokinase; Provisional.	3.2344e-146
NC_019745.1|WP_155824059.1|4588156_4589467_+|extracellular-solute-binding-protein	gnl|CDD|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.80181e-98
NC_019745.1|WP_015190451.1|4604163_4605033_+|branched-chain-amino-acid-ABC-transporter-permease	gnl|CDD|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.4405e-71

Protein sequences

>NC_019745.1|WP_015190441.1|4590632_4591280_-|histidine-phosphatase-family-protein
MSQIVWIARHGNRIDFVNPEWFNTAERRFDPPLSDDGVVQAYQLGQRLKAENITHIFASPFLRTVQTANQIAEALDLPIKLEAGLSEWLNPAWFPEMPEKLSIEALTELYPRIDSSYTSRVVPQYPETHAEMLVRAGKTATLLADEFFSEDILLVGHGASVLGGAVGLVGASAKDQVKASLCCLVKVVRQEPDWLLELTGDTSHLSEVEEVIRFN
>NC_019745.1|WP_015190440.1|4589473_4590511_-|glucokinase
MTLLLAGDIGGTKTILRLVQQPEIGEIQTLYEERYSSRNYPDLVPIVRQFLATAAEKTGKDTTPQKACFAIAGPVVNNTVKLTNLAWFLDSQRLEQELKIAPISLINDFAAVSYGVLGLKEEDLYTLQAGKPQPLAPVAVIGAGTGLGQGFLIKKGEEFDVFASEGGHADFAPRSELEFLLLKYLLDKHDIQRVSVERVVSGLGIIAIYQFLRDRSYATESPEIAEIVNIWEKQAGSERSVDPAAAISTAALEGRDRLSEQTLRMFVEAYGAEAGNLALKLLPYNGLYIAGGIAPKILPLIQEGNFLRAFSSKGRMRSILEDVPVNIVLNPQVGLIGAALYAAKL
>NC_019745.1|WP_155824059.1|4588156_4589467_+|extracellular-solute-binding-protein
MQPAKNVFKKLHQIVVIILIVSAISISGCQTLPNNQQSNVTKITFWHGVNPPSNRDVLQKLIDQFNQEHQDIQVESLYIGQAEQQLPKILAAVVGNAPPDLLWFNATLTGQLVELDAIRPLENWLTASPVKNQLDPALFESMEYQGHIWSVPFGTNNSGVFYRPSLFQAAGITKLPETWEELRRVARQLTRDTDGDKRIDQHGIFLPLGKGEFAVFLWLPFMWSAGGELVADTQQAAAVDLANNSGAIAALQFWQNLIADGSAVLSLPERGFETDDFLAGKVAMQLTGPWTLGQLKSTGVDFGVFPIPADKRRATGIGGENLFVFKSTPQREQAALKFTEFVLSEQFQTQWAIGTGYLPVNLKARENEQYKAFAKELPAVQVFLDQAQYGRSRPIFPGYSRVSENIGRALEAVLLRKSSPAEALKAAQQRLNLIFQ
>NC_019745.1|WP_015190438.1|4586754_4588011_-|ABC-transporter-substrate-binding-protein
MLKRFRSFVLLFLFGIIISTGCIARQGNSDVVTVTLSGWSNLQEKQLLQQVLNEFEAMHPKIKVKYDAIADQYMDVLKTRLIGDTAADVFYLDAFEAPGMIEPGVLEPLDDYVTPEFDIADFQPSLLAAFQQNGKTYGFPKDFSTLVLFYNKQAFAEADLSQPPQTWEQLREYAKKLTVDRNNDSRIDRYGFGIIPELARLYFVIKAFGGELINTLEQATFASPESLQGLQLIIDQYRQERSSAQPSDAGTTSGGEIFGQGKAAMVIEGPWLIPYLEDTFPALEYATAEVPTIAGKKGTMAYTVAYVMNKKSQHKPEAWQLISYLTGKEGMTLWTRTGVALPTRKSVTQKLGYDQKPLYAPFIAGAEYATVWQAGKNLPTIMNNFNNQFISAMLGEQPLKIAMQKAQATANREIELMQ
>NC_019745.1|WP_015190437.1|4586107_4586497_-|metal-sensitive-transcriptional-regulator
MNRSHQLAEDKLPVAREEHSHSHDTSNVGDRFGDSSTHPHVHSEESLRSIVNRLSRIEGHIRGVKTMVQESRPCPEVLVQIAAVRGALDRVARMILDAHLSECITRAAQEGNIEVEMAELKAALDRFLP
>NC_019745.1|WP_015190436.1|4583841_4586025_-|transglycosylase-SLT-domain-containing-protein
MLERWKNRVPLAAGAGLCAVLVGVAVIATNNDWLQSPQDNSLHAIDHPKSSVLPLVPLSPTARMVQLSAIAQLPPSPDRDRARYVLANDYLQIQQAEQALQLLEGLDQSYPVLAAPILAKRAQAYEILGDTTNAQATYQELLERYPSHPVAVEALYALGKTTPQYWLRAIAQFPSHPRTLEIARLLLQQNPNQPQLILLLARYGYEQPGVVAVLDRLVSNYSEQLQPQDWEAIAIAYWENQVYSKAATAYQQAPRTALNVYRIGRSLQLSNKRPEAIAAYQQLIREFSTASESGTALLNLAQITQDNNQKISYLDQVVNQFPQHAGEALAQKAAILDNLGNKTSAAQTRQLLLNKYGDSDAAVEYRWRMALQKAANKDYRGAWQWAQPIPTSNPKNILAPRAGFWVGKWAQQLERQQEAKAAFEYVLSQFPQSYYAWRSATMLGLDVGNFNTVRQLNFEITPPQRAVLPAGSDTLKELYQLGQDTDAWALWRAEFQNYHQPTVAEQFTDGLLRTAIGQHLKGINLVSTLEDRESPQDQTEYQALRQELTYWQARYPFPFFEEITTWSQKRQLNPFLVTALIRQESRFEPKIRSVAGAVGLMQVMPSTGEWIAQKIDLKEYNKENPQDNMRLGTWYLDHTHEQYDNNSMLAIASYNAGPGNVSRWLRTLNTRDPDEFVEAIPFEETRGYVRQVFGNYWNYLRLYNPEVAQLVASYTKRQTSSLPQPPQ
>NC_019745.1|WP_015190435.1|4583205_4583655_-|hypothetical-protein
MFQKHPFGFLSIVRCGSAIALPTLVTFGVISFLPSTTPIAKAKGEECIFQSSVAGLNLVSLKISPSVIEGRRQPEGEVTLSAPAPTGGAVVLVGSNFYGANPGYCVIVPQGKTSQTFSIFTYRQSTTSRGNIFASYGDTFLEAELTVTP
>NC_019745.1|WP_015190434.1|4582274_4583096_-|twin-arginine-translocase-subunit-TatC
MTPPSDLDSATMPDPTTDLEQETKTDNSNQDWENNYLNELPGEVEMSLFDHLEELRQRIFYSLIAVVIGVVGCFIAVKPIVQLLEVPAQGVKFLQLAPGEYFFVSLKVAGYSGLLLASPFILYQIIQFILPGLTRRERRLVAPIVLGSTVLFAAGLVFAYLALIPAALKFFINYGADVVEQLWSIDRYFEFVLLLLFSTGLAFQIPVIQLLLGALGIVSSKQMLAGWRYVILGGVVLGAVLTPSTDPLTQSLLAGAVLGLYFGGIAAVKLIGK
>NC_019745.1|WP_015190433.1|4581945_4582278_-|tRNA-binding-protein
MTEITYSDFEKVEIRVGKVVKVEDFPKARKPAYKLWIDFGALGIKKSSAQITKYRHEELTGKQILAVTNFPPRQVADFMSEVLVLGVVLDNEEVVLIKPDRDVPLGNRIL
>NC_019745.1|WP_015190432.1|4581603_4581918_+|DUF3067-family-protein
MTGKELRQILLNKWGRSYDVQLRRVQGKVFLQVMWKYLEQASFPLTEAEYQEHLDAIANYLHALGGTQQVQQFIAQTRERPRLGKAVSIPLDLDFGERASEWLI
>NC_019745.1|WP_041919386.1|4591808_4592039_-|hypothetical-protein
MTWEEIRKEAYQLSVSDRLLLVEAIVRSLSNELRPRPEPTEGIVERLAGSLKTDTPPPTDKEIDAILENRLKGKYL
>NC_019745.1|WP_015190444.1|4592324_4593008_-|hypothetical-protein
MGFQLENVVPWGRSLPEYIKMFDLNSDDFKLSILDCAGGPASFNAEMTKRGYNIVSCDPIYQFSDAEIAQRIQETYPVILKGVQETRDHLVWRDIASPEQLGKIRMAAMRQFLDDFPSGVATGRYITAELPNLPFDLGEFDLALCAHLLFTYSEQFSLDFHLQSVVELCRVAKEVRIFPLLVNFSNDISPWLEPVMNYLQNEGYTTEIKQVAYEFQKGGNQLLRISK
>NC_019745.1|WP_015190445.1|4593037_4593856_-|ATP-dependent-sacrificial-sulfur-transferase-LarE
MLEKLAQLQALFRDMEQALIAYSGGVDSTLVAKIAFDVLGDRALAMTAVSPSLLPEELEDAKTQAAQIGIAHQVIQTHEMDNPNYTANPVNRCYFCKSELHDTLKPIAQQMGYPYIIDGVNADDLRDYRPGIQAAKERGVRSPLAEVGVTKAEVRQMSQQLGLPWWDKPAQPCLSSRFPYGEEITVAKLQRVGRAEMYLRKLGFQNLRVRSEGDTARIELPPEQIKEFVLTTDLQTLVAAFQQFGFVYVTLDLEGYRSGKLNQVLPQVMSSV
>NC_019745.1|WP_081588083.1|4594001_4596776_-|GAF-domain-containing-protein
MEIMTTANHGGSRISRALLKWHQRIPQPLRYLGLLEAYLIIWAILDQVALLFATAPETFVWYPPVGLDVTLLFVFGLRYVPALFLNTFVHEYLITNSDLDLTSLLIFGLISTVGYGGVSALLLRKIKINPRLRTLRDVMWFVVVMTLFTPLIVAALQTFIIVLQRIIPLSTWLVYTLHSWAGAATGIAMLAPFLLVLLRQLPWVWAYKEQEVPASEPPLIPLAAKQRPELILEIAALCVAIWAAYGAQRGESLNYSYFVFLPLIWIAIQHGFERATAAVLFINIGVAIFVQAKLGGSNVFALQFGMMAISLTGILLGGFATQRMQAETELNYSAQRLRILHELDQAILATRSLSEIAAAAVTQVAQMIPCTRISLVMFDFEKSEVTLLAIHTERETQVPGIRLPLSAFGDVEPLQRGEVNVIQETRTTQMPAGAELLLGNQVRAYINIPLIAQGELIGSLNISKDTLGAFPNQLRTVAEQVASTVAIAIQQARLFEQIERQALHERSLNQISRILNSSLDPQAVLCQIVQLTGECFAVDRVVIFNFTQRQIQVLNEWRSHAEVVSMQDFIAPIADWPDLLDPDSDFFCHHFFHAPDYAQTPMTPARLQQIEHAKTLSVLSVPIFVRDQLFGGLSLQTTTTYRTFTAEEISLLQRISEQAAIALYNARSYESLEEIVQQRTQELEQEKQLSEAANRAKTEFLSNISHELRTPLTGILGFSSVLLEQVFGTLNSKQMQYLELISTAGKHLLELINDLLDLTKIEAAKEELQLEQVIIAEIANACISMLQERAQEQGLKLELQIAPNVTDCIADKRRLKQILVNLLTNAIKFTETGSVTLNIIQTPSETQFSVIDTGIGISQEDLAKLFQPFQQLDSGLDRKYEGTGLGLALSRKLAQLHNGDLTVESELGRGSRFTLHLPLRVGNC
>NC_019745.1|WP_015190447.1|4596795_4599039_-|GAF-domain-containing-protein
MINILNCAQSQPVQKQNSDLILKLLIVEDVLADVELMVLALETAEIKFTYDAVDNLKDCEQLLHSKSYNAVLADYRLPQFTAYEVLELLQQSAQEIPLILVTGSLGEEAAVDCIKAGMTDYVLKERLFRLPMVLGRSLEEFALRRQQKAAIVRIQQQAQQQAIINRIVQAMRETLILDDVLKSSVDALHEALKPSRCFISQPDTQKEMWVNHVSTATINREDCIGVKCLIYPHYKEAFQQGKIIIINRNDPSVPLALHELVNQWNLNSVLIAPLVYQQTLLGGIILQQCDRDRVWTEDEISLLQAISGQCAIAIHQARIFHQLQQQTQWEKTLNQISRSLNSSLDPEYILQEIVRLTGECFGVDRVMIYALEHEQIKITREWRSSEDIASLIGYITPLSEWMASINFSPYQVFYAPHLEKICPPSPEVEIVKTVPHLTVLSVPIFIRDKFFGGLALHTITRVQEFTEEEINLVQRIADKAAIALYNAQSYELLEELVKKRTQELEAEKLLSDAANRAKSEFLSNMSHELRTPLTGILGFSSILIEEVFGELNAKQKQYIQGIQTCGKHLLELINDLLDLTKIEAGKEELILENIQVITVCQECLALFDKNQSSKLQLKFAIAPDVTTCVADHRRLKQILVNLLSNAFKFTEIGSVTLKVEQTEAAILFSVIDTGIGISAPDQAILFQPFQQLDSGLDRKYEGTGLGLALSRKLARLHGGDIIVKSQPGSGSCFTLILPHSLQTNELS
>NC_019745.1|WP_155824061.1|4599043_4599487_-|response-regulator
MEPSRILLVEDEPLNIELLKLALESFNFTNQIDILEDGEQALQYLLGKEGSPPHFPLPDLVLLDLKLPKINGVQVLQAIRSHPRTRDLAVVILASSPDDKDLNACYALGVSQCVTKPLDFERFITIVRQVGFYWVLLKKPPLLPPES
>NC_019745.1|WP_015190449.1|4599500_4601738_-|PAS-domain-containing-protein
MPRYFNSLRTRLNCLVLLAVLPGLGLTLYAYMKELQARKAYVREQAVLLTQVVSAHHQQLIAETRQLLVVLAQLPQIQDSYPTPCNALLKNLQQQYPRFATLGVVQRNGNVACSSSPNQSVNLADRVWIANALQKREFTVSDYQMGRISGKPVIVFAYPLFNAQNQANSVVFASLDLTWLNQLLAQINLPRNTSLLVVDAKGVVLAYHPHSEWVGERPNLPIVQKILAQGNGVAEVNDVDGISRLYAFTLLSSSLPQANVYMGIGLSEEAPFTVAERNLQRNLFGLAMIAMGAIAILWIGSDLFIWHWVRRFIQVINRLAAGDFTARIGLKDSPQEMQHLIDNFDRMAASLASQIARCNATEIELKKANERFQLATAAVHAIIYDWDIRAKTITRTQGLFDVLGYTTTEADPSDDWWLERIHPDEQKYVRNYIATMLKSSTSNDFALEYRIRKRDDRYVYVWDKGLIIRDADGGAVRVVGSVLDISERKQAEAAVNQMNATLEQQVQERTAQLAATNQELESFCYSVSHDLRAPLRHIAGFAEALAEQLKRNNAIADPKVHRYIEVIQSSSDRMTMLIDGLLTLSRVGRKQLIYQPVDLYPLVESAISLATSQAEAIDSRKIEFQIGSLPKVMGDPTLLQQVFTNLIDNAVKFSRHSHPTIIQIDSLPDQTLFIKDNGIGFQMEYADQLFGAFQRLHSQREFKGTGIGLAIVQRIIHRHRGTIWAESKPNQGTTFYFKLGQVVEE
>NC_019745.1|WP_015190450.1|4601797_4603645_-|response-regulator
MQQSSTPEEIRVDATHPEQKVANTEVLQFQQVIADLWLERGLNELQNQINQCLAGAYHTQQSLQELEAEVFQALIQQLSVSLKTDKVAIAFLQGWSSLVVSDAIPKHISRTESNYVVCYSALSTSAASTEKSPAWQLQQIISHQELQALQNQNPKAAWALQDDRKVVGWLIIATCALPKSATGERLKFQLQPQFIERSLNVTMHAIAQLKHLQALTLKCQQLEVQNCDLLRTNKLKSEFLANTSHEIRTPLSSILGFTHLLKAQGYNPENHRHQEYLNIILTSGQHLLALLNDILDLSKIEANQLEINKETVNIPEVCRSAISLVKEKASDKNLQLQLDIDANATTLVADSLRLKQMLFNLLSNALKFTNKGAVGLQVKQKGVFIHFTVWDTGTGIAKEKQPQLFQAYVQISNVVAGRQEGTGLGLALTQKLAQLHGGWVEVQSEVNCGSQFTIVLPLTTAAATSKTKVVPQRSSVTTDVRLSLNSQAAAPKTVTVMLVEDNFHNAKLMTTYLRKLGYQVTWVNSAAQMWEELPKAKPAVILMDVHLPDVDGLTLVQQLQANAEYRHIPVIVQTAMAMKGDRETCLAAGAIDYISKPIDLQALANMVSKYSDLNH
>NC_019745.1|WP_015190451.1|4604163_4605033_+|branched-chain-amino-acid-ABC-transporter-permease
MDVQQAQLIVNGIAVGSIIALAAVGLTLTYGILRLANFAHGDFMTLGAYLTLVANTVGNINIWLSMVLGALGTVVAMLLSEKLLWSRMRANRATSTTLIILSIGLALFIRYAIVFVWGGSNQAYNLPISPARDIFGLKIPQNQIIVLALAVLAILGLHYLLQNTKVGKAMRAVADDIDLARVSGINVDQVIIWTWAIAGSLTALGGSMYGLVTAVRPNMGWFLILPMFASVILGGIGNPYGAIAAALIIGISQEVSTPFLGSQYKQGVALFIMILVLLIRPKGLFKGTI
>NC_019745.1|WP_015190452.1|4605184_4605322_-|photosystem-one-PsaX
MTSQATKDATIKTGNPPYPYRTIISLILLAGNFLVAAIYFRIINP

Crispr_ID: NC_019745_9

• CRISPR_ID: NC_019745_9
• CRISPR_location: 4675562-4675674
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_019745_9

Consensus_repeat	Method
GCCATCACCACCGTAGAGGGTGTCATAGCCAT	CRISPRCasFinder

spacers of NC_019745_9

>9.1|4675594|49|NC_019745|CRISPRCasFinder
AGCCACCATACATGGTGTCGTTACCACCCATCCCGTTGAGATTATCATT

CRISPR arrays and Neighbor proteins around NC_019745_9

CRISPR arrays

The CRISPR arrays of NC_019745_9

>merge|NC_019745|9|4675562-4675674|CRISPRCasFinder
GCCATCACCACCGTAGAGGGTGTCATAGCCATAGCCACCATACATGGTGTCGTTACCACCCATCCCGTTGAGATTATCATTGCCATCACCACCGTAGAGGGTGTCGTAGCCAT

>NC_019745|9|9|4675562-4675674|CRISPRCasFinder
GCCATCACCACCGTAGAGGGTGTCATAGCCAT	AGCCACCATACATGGTGTCGTTACCACCCATCCCGTTGAGATTATCATT
GCCATCACCACCGTAGAGGGTGTCGTAGCCAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015190504.1|4667877_4668153_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_155823820.1|4678691_4681403_-|CHAT-domain-containing-protein	unknown	unknown	gnl|CDD|227328
NC_019745.1|WP_015190506.1|4671219_4672653_-|calcium-binding-protein	unknown	unknown	gnl|CDD|380205
NC_019745.1|WP_015190502.1|4661846_4662605_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_019745.1|WP_041919397.1|4659343_4660117_+|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl|CDD|224413
NC_019745.1|WP_015190519.1|4688096_4688417_+|DUF3593-domain-containing-protein	unknown	unknown	gnl|CDD|371929
NC_019745.1|WP_015190505.1|4668294_4670871_-|S-layer-family-protein	unknown	unknown	gnl|CDD|368641
NC_019745.1|WP_015190501.1|4661157_4661493_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190515.1|4681320_4682433_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|368641
NC_019745.1|WP_051038469.1|4685555_4685750_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190517.1|4686449_4687490_-|polysaccharide-pyruvyl-transferase-CsaB	unknown	unknown	gnl|CDD|132648
NC_019745.1|WP_015190503.1|4662612_4667694_-|hypothetical-protein	unknown	unknown	gnl|CDD|238121
NC_019745.1|WP_015190513.1|4677395_4678553_+|DUF1822-family-protein	unknown	unknown	gnl|CDD|370155
NC_019745.1|WP_051038470.1|4685749_4686025_-|hypothetical-protein	unknown	unknown	gnl|CDD|320370
NC_019745.1|WP_015190518.1|4687631_4687976_+|DUF2499-domain-containing-protein	unknown	unknown	gnl|CDD|371197
NC_019745.1|WP_015190512.1|4676153_4677389_+|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|274357
NC_019745.1|WP_015190516.1|4682556_4685181_-|diguanylate-cyclase	unknown	unknown	gnl|CDD|182070
NC_019745.1|WP_155823817.1|4673276_4673555_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190508.1|4673755_4673920_-|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190510.1|4674286_4674727_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_155823820.1|4678691_4681403_-|CHAT-domain-containing-protein	gnl|CDD|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	6.9094e-141
NC_019745.1|WP_015190506.1|4671219_4672653_-|calcium-binding-protein	gnl|CDD|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.15386e-21
NC_019745.1|WP_015190502.1|4661846_4662605_-|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.66902e-19
NC_019745.1|WP_041919397.1|4659343_4660117_+|peptidoglycan-editing-factor-PgeF	gnl|CDD|224413	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism].	1.03002e-62
NC_019745.1|WP_015190519.1|4688096_4688417_+|DUF3593-domain-containing-protein	gnl|CDD|371929	pfam12159, DUF3593, Protein of unknown function (DUF3593). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 98 and 228 amino acids in length. There is a conserved LHG sequence motif.	4.36837e-50
NC_019745.1|WP_015190505.1|4668294_4670871_-|S-layer-family-protein	gnl|CDD|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	5.22794e-22
NC_019745.1|WP_015190516.1|4682556_4685181_-|diguanylate-cyclase	gnl|CDD|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	1.44413e-72
NC_019745.1|WP_051038470.1|4685749_4686025_-|hypothetical-protein	gnl|CDD|320370	cd15242, 7tm_Proteorhodopsin, green- and blue-light absorbing proteorhodopsins, member of the seven-transmembrane GPCR superfamily. This subgroup represents blue-light absorbing and green-light absorbing proteorhodopsins (PRs), which act as a light-driven proton pump that plays a major role in supplying light energy for phototropic marine microorganisms, by a mechanism similar to that of bacteriorhodopsin. PRs are found in most marine bacteria in surface waters, as well as in archaea and eukaryotes. They belong to the microbial rhodopsin family, also known as type 1 rhodopsins, comprising the light-driven inward chloride pump halorhodopsin (HR), the light-gated cation channel channelrhodopsin (ChR), the light-sensor activating transmembrane transducer protein sensory rhodopsin II (SRII), the light-sensor activating soluble transducer protein Anabaena sensory rhodopsin (ASR), and the other light-driven proton pumps such as bacteriorhodopsin (BR). They have been found in various single-celled microorganisms from all three domains of life, including halophile archaea, gamma-proteobacteria, cyanobacteria, fungi, and green algae. While microbial (type 1) and animal (type 2) rhodopsins have no sequence similarity with each other, they share a common architecture consisting of seven-transmembrane alpha-helices (TM) connected by extracellular loops and intracellular loops. Both types of rhodopsins consist of opsin and a covalently attached retinal (the aldehyde of vitamin A), a photoreactive chromophore, via a protonated Schiff base linkage to an amino group of lysine in the middle of the seventh transmembrane helix (TM7). Upon the absorption of light, microbial rhodopsins undergo light-induced photoisomerization of all-trans retinal into the 13-cis isomer, whereas the photoisomerization of 11-cis retinal to all-trans isomer occurs in the animal rhodopsins. While animal visual rhodopsins are activated by light to catalyze GDP/GTP exchange in the alpha subunit of the retinal G protein transducin (Gt), microbial rhodopsins do not activate G proteins, but instead can function as light-dependent ion pumps, cation channels, and sensors.	2.50355e-06
NC_019745.1|WP_015190517.1|4686449_4687490_-|polysaccharide-pyruvyl-transferase-CsaB	gnl|CDD|132648	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	2.29395e-148
NC_019745.1|WP_015190503.1|4662612_4667694_-|hypothetical-protein	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.04842e-82
NC_019745.1|WP_015190513.1|4677395_4678553_+|DUF1822-family-protein	gnl|CDD|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	1.87899e-107
NC_019745.1|WP_015190518.1|4687631_4687976_+|DUF2499-domain-containing-protein	gnl|CDD|371197	pfam10693, DUF2499, Protein of unknown function (DUF2499). Members of this family are found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins.	5.95315e-47
NC_019745.1|WP_015190512.1|4676153_4677389_+|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	3.93308e-10
NC_019745.1|WP_015190515.1|4681320_4682433_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl|CDD|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	1.52667e-26

Protein sequences

>NC_019745.1|WP_015190510.1|4674286_4674727_-|hypothetical-protein
MLLNKFTASLLSVSLVTAAFTVAPNSASARENKIDQLLIQHGLNPTKCGPGVVAVWVNLNQQACAVPNAQYPAGTYRLTNDFQIAVISTPQPNNQATPATNAHPTINVFNVGTPGNYSSTPNYPNTPGGYPPTMTTPSVVFTSNPS
>NC_019745.1|WP_015190508.1|4673755_4673920_-|hypothetical-protein
MAIRHVASKISAVIFSFLAMSAPALSQTLQPTLIPIQSSDGQSLINSFPNGVST
>NC_019745.1|WP_155823817.1|4673276_4673555_-|hypothetical-protein
MQLYQGTLNPQQQNGCIAQSNQQLSQSQALELISGANFYATNMLERKLYPPRGQRRRVAQIFQFIYEIDASDAEMQKLATQSSNNSLIDISK
>NC_019745.1|WP_015190506.1|4671219_4672653_-|calcium-binding-protein
MVYAKLSSWWGSGIRSGSAVSNEHYDYKIPVQSLEDQDGVDEPVFDITNYVTSGIPIIINNNPGNNLDKDVPPDSTDTILLQIQGGDVGFTLETYTFKENQFNGKPIPVGGSYQTNIELKANSSIKTALIVIEDNNGPLPISGTDASNILNGTDAKNLIYAKKGNDTVYGKGGNDTLYGEAGADTLYGGLGNDQLYGGSGNDKLNGDNGNDLLYGLDNNDSLNGGIGKDTLFGGNGKDTLVGGDGDDLLKGEYGDDLLIGGLGNDYLDGGDGNDKMDGGAGNDTYIVNSINDTVIEYQKSGVDKVISSISYALGTYVDHLELTGYNEATNQYADLDGYGNEMANKIEGNGGSNYIYGYGGNDFLSGFSGDDYLSGGDGSDRLEGASGYDTLVGGTGADTFVFNSRFEEGIDIIQDFNYIEGDTVEVSASGFGIVPGANQYDNFSFDNSTGALSYNGTQFASIQLGSGFVISLDITIV
>NC_019745.1|WP_015190505.1|4668294_4670871_-|S-layer-family-protein
MKLRCQSFWCPTSFLLFLTISSPLQAQIIGDQTLPNPSSVTTEDVNSIITGGTQAGSNLYHSFSEFSVPTNGVASFQNLAPEIENVITRVTGAASNIDGLIEVLQADGVVSSANFFLLNPRGITFGSNALLNIGGSFIASTASSLNFADNTQFFSANLTQAESILSMSVPVGLQFGVNPGRILNQAQTTIDIEGQIIPIGLQVLPGKTLALVGGDVTLESGVAIAPAGRIEIGSVGSFSFVSLNPTNSGWYLDYTGVQNFQNIELSQQSLVDVSGEGTGNIQIQGKQVAIAEDSFVIAAVESQNGGEIFIQASDLTIDSSLIGTSTDNGIGANVIIETGKLVIVDGQVLTRTRSAGQGGELKITASESVEVVGGRSIPRGNGEFSFFPSRLLTEADETATGTAGNLSLNTNKLSLQNGAQVGSATFGAGNTGNVNVQASEIDIVGVARTPEGEPISDAGLPFPSGLFASTEEGYSGNGGNLTVTTDRLSIRDGAVVQTTTFGSGDAGNLTIQAAQSIEVAGTVNVEGQDLKSGLFANSGGLPGTGLPAIFDATGRGGNLTIQTDELIVRDGAIVAVSSVNETTAAQGAGNLQVNAQTIRLDNGEIVANTASGQGGDINLNVQDVFLRRNSAISTTAGIEGTAGDGGDISITNARFIIAAPNENNDIKANAFLGQGGKVTVDAQNIFGLTVRSLEDLQTLLGTTNPQRLDPVQLPSSDITAISQTNPQLSGEVVINTPDVDPSRGAVVLPQNLVDVSGLIAQGCAAGNVANESQFVVTGRGGLPPNPGEVLSSDDVWQDWRFSNATAGVTSISASTPRTTSTPLVEATNWATNSKGEVMLIAAMSTNTVNPGQGVISCR
>NC_019745.1|WP_015190504.1|4667877_4668153_-|hypothetical-protein
MTSVAKLHKPTKATLLIQYNLQHRDCLSLQGGAVMAINWKKILLKTTLWLGTEILLNLVGLDNLADYSEFISGQEFVTLTNSVSICQCMNY
>NC_019745.1|WP_015190503.1|4662612_4667694_-|hypothetical-protein
MSPVSVGTSRSMYLESGKAKLWVLLVGINKYSDSGIPTLRYSAVDCQGLTEALADATQKFPDKEVIVHHDFATLTPELFAAQNSLKYIISAARPQDTVLFYFSGHGFLEPKTQQAVLCLADTRKDDLLNTGWGMSELLGMLGECAATQQLVWLDACHSGGMTLIGARGENANPLQNPTSQLVELLRQRATQSKGFYALLSCDQGQQSWEFPELGHGVFTYFLIRGLRGEAADAQGVIEVDGLYKYVYHRTLQHVDKTNQQLRLINQQKRSRGETNLHSEYPIQTPKRIVEGIGELILGLSSASIGTAHPRQALVINGLASYQATVELSKVLRQAGKFELEYLPRPGKEWSQVRDVIQGYLRSPNLLQSSSPNITTAFLYLRGRIEETTEGDSWLVLGDGVRLSRSWLRQELRRSHIAQQIIVLDCPGATLLADWVEDLQLGPQHGQCLIAAASPLDAPEQFTQALLQTLTTADPQTGLPVAAWIAQLQVELAGTNIPLHVWLSGVQGVIEVLPNRVIVSRGGDSEDFDLGLCPYMGLKAFGEADAPYFYGREALTQKLINELSQRAFLAVVGASGSGKSSVVQAGLMAQLRQGKQFPGSESWWLGSIRPGTKPMLSLVQRLVDAGTEKEKAYQALQLEGLLHLGVEGFVRWLRTRPEPMVVLVVDQFEELFTLSASSDRQQFLDILLGAVNYAADRFKLVITLRADFINSCLETPSLAPVLQQASVLVPPCLTCDDYRQVIVQPAQQVGLHVEPELVEVLLQDLPHSAGDLPLLEFVLEQLWLHRQSGVLTLQSYQQQIGGLKGVLEKKAQAVYDSLEPEAQACAQWIFLTLTQLGDGTEDTRRRVNKSEMTVAKYPAPLVEKTLQALTAAKLIVVNCDEHSIGQSRGASSPEVSLATLKQEVTIEIAHEVLIRHWSTLRWWLEENRTRLQVQRQIEQAASLWKQNQQHSDFLLHGVRLAEAEEIYVKCADELSPETQQFIAACLEARQQQHLQTKRRLKRAQLTAGVMSVLGFTACGLAGIAYLQRQNIQIESLNSLSTALLSTNQQLEALSVSIKAAQQVQQTLAVPYELQIKTASTLQQVLSAMQERNRFTGHAYSVNAIAISPDGQIIASASDDSTIKLWHQNGKLVRSLLAHTSPINSISFSADGQTLASASDDGVKLWNVNGTLIKTLSGQGAKVTSFSPDGKIIAASDDSTIKLWHQDGTLVRSLLAHTSPINSISFSADGQTLASASDDGVKLWNVNGTFIKTLQGHNGGVTSVSFSPAGMLATASRDNTIALWSREGNLLKTLKGHSAPVNSVSFSPNGMLLASASDDFTVKLWNHERELETFKGHTAPINSVSFSANGMLVSAGVDNTLRLWSIEQKPIVAQECPQTISVSFSANLQDIALVCRDNTVTLWNRNANAAKTLKEDNDIFHQVSFSPDGSIAAAENTVELQAKSIDAQHIIKLWSRDGVVLKSFTGHNNWLNSVSFSPDGNLLASASDDKTVKLWTRDGREVRSLQGHQDAVNNVAFSPNSQIVASASKDATVKLWSVNGKLLNTLQGHNDAVSDVSFSADGQLLASASVDNTVKLWRLDGKLITTLQGHSGWINDVSFSPDGKLVASASDDSTIKLWNIHGQLLGSFSVKAQSLGVKFTTDSKNLVAVGSDNAVRQWTLDLNQLVAQGCNWLSDYLTTNSHVNASDRHLCKTIN
>NC_019745.1|WP_015190502.1|4661846_4662605_-|tetratricopeptide-repeat-protein
MFRLHKTLLTTCLLFGITTALNEIPTTYAQSPLAAMTAEEYYHQGVFKDQLEGDKQGAIEYYTQAIKLDPNHTDAYNDRGLARLALGDPQGAIADYTQAIKINPRHAQIYNNRGTARLAAQDLQGAIADYTQAIKINPLLEDPYLHLAQLYRQRGLNRENSGDATGAIAEYTQAIQVLNQMPSSERSRLRGNRQGSVYNLAMTHYHRGITRYNSGDKLGAINDLQKAAELFHTQADTNNHQLAVRKIREIQR
>NC_019745.1|WP_015190501.1|4661157_4661493_-|hypothetical-protein
MDNKIRSTSEPFSFRDIYSLRFVIQFFFSFVILVFSLFQLARTDIDEEKNTALYWSCVTGILALWMPAPSSKNLSSNPTNIEQMNVPHAEVHLESPNSSNGKSATEIAVKH
>NC_019745.1|WP_041919397.1|4659343_4660117_+|peptidoglycan-editing-factor-PgeF
MHTWHWQTWQGLPYLTCSLLEPWLHGFFTQHFWSRSPAELVKVLHPTAPAYRVKQVHGNVVLTPSQIKEAMNAENDLLPPADGVVTEQAWQSVWVASADCTPVLIADSHTGQVAAVHAGWRGTAAKIVPAAIARLQAQGSQLADLRIALGPAISGAVYQVSTQVAAQVGASICAASAEELIVNALQRLPDAPILQDPEPERVRLDVRRVIALQLEHLGIHAEQVAIAPHCTYQQPDCFFSYRRDQQKKVQWSGIVSR
>NC_019745.1|WP_015190512.1|4676153_4677389_+|sigma-70-family-RNA-polymerase-sigma-factor
MRSRQDIVEIFSSFIQFNADRFTNWATDPKLRRNMQNSLAQSPHATTKENFWALYWYKLWLAQPESQAFGHLYAYLQEAGYWAAQSIVTNFTSSQHTVADCFQIAIAKVDKILQGFNSQQGFNLKNYAGAIFTSTIKETLRQRQEVDICTDWSLLRKLSHKRLEAALQNAGISPEKVTSYLLAWNCFKTIYVPTQAGATRQLAKPDSATWDAIAKLYNSQNPGTPVRQAETLEQWMLACAKAARSYLYPTVASINTPKPGQDTGEWLDNLPELQGESLLTNIITQEEIESRQTQQKQISEVLVAAIAQLDMQAQQILQLYYGEALTQQQMAAQLDIKQYTISRRLTKCREELLKALAQWCKDLHISLTSDVLKDISAVLDEWLQGHYSQTDMAAGVEDTSATLADLKSPRE
>NC_019745.1|WP_015190513.1|4677395_4678553_+|DUF1822-family-protein
MTFDSLLTAANPTQLWLEISPDDRSQAWQYQNYSTPSSRWNATLNCITLNTFLSWLRTEYAPQAKVYPHQAALASIWEFVNGVAIVWETTKIVLIPSETIDTAELRVPQEWIDIPEWTADYYLGVQVNLDDGWMRIWGYTTHQQLKTNGHYDASDRTYSLDEDELIADINILWVAQQLGITEATKSAIAPLAIPQTQAENLIQRLGNPEIIIPRLEIPFTIWGAILAHGGWRQRLYERRQGLPDQWSILQWLRSGISDVAQQIGWQQVELQPSLARSRSLESTPASVALSRQLVIAGQQYELRITQQDSEQWRFELRNTSMGALIPEGVKLRLLTEDLQDFENNEDTATTAVEQLFVEVALEPGEGIVWEIEPTPEGYEREILRF
>NC_019745.1|WP_155823820.1|4678691_4681403_-|CHAT-domain-containing-protein
MVKSFSLRLHQQVLLTINLPLLPAMSAKYSTKILWAALTPLVMLSASALPAIAVVNQTQLSVTADTNAIQLMQQGINFYQAEKYSAAVKVLQQAVAVFRSEGDRRHQAQALNYLALVYQELGQWTLATSAIADSLQLLQTQHNGQYLPVLAQALNTQGHLQLAQGQAQKALETWQQATTTYDKIGDRAGSIGSQINQIQALKALGLYRRALTNLNSVKQTLQQQPDSLIKTTGLRSLGNVLRVIGDLPQSETVLRESLAVAQKVRSPQHESAALLSLANTLRAQQNLQNALVYYQQAASVTNSSSQKLQARLNQLSLLVETQQLSDAQALLPAIQTLITNIPTSRIAVNSRINLAQSLICLKQHKQRQTQVQSSPIVQQCVDETVGVKAQAELSSLPSWSDIGQLLATAVQQARTLQDQRAEAQALGYLGALYQQTQQWSEAQKLTEQALLLAQTINASDIAYRWQWQLGRLLNATGKTQQAIASYTDAVSSLKSLRNDLVGINPELQFSFRDSVEPVYRELVSLLLQSPSATSQKNLVQARDTIEALQVAEIENFFRTACLDTQPVQIDQVDSSAAVIYPIILGDRLEVIVSLPKQPLRHYTTPISANRVESIVEGLRQTVFTQTSRRYLPFAAEVYNWLIRPVATDLEKSGVKTIVFILDGAMRNIPMGVLYDGQQYLVEKYSIALTPGLQLLDPQPLARERLKALTAGLTEARESFAALPNVKLELEQIQSEVPSRVLLNQEFTTNTLQNEVQSSPVPVVHLATHGQFSSKAEETFILSWDSEIDVNELNTILRTRGDNRRNAIELLVLSACETVAGDKRAALGLAGMAVRAGARSTLATLWSVSDVATASLMGQFYKEYANTSVTKAEALRRAQQNLLKDPKYEHPYFWAAYVLVGNWL
>NC_019745.1|WP_015190515.1|4681320_4682433_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MVTSWNYRCSLVTASSAIAVSFMTTAFNCALAQITPDNTLGTESSIITPNTEINGIPSTQINGGAIHGQNLFHSFQQFNIAPQTGAYFSNPAGVENIFSRVTGGVPSNIQGTLGVLGNANLFLINPNGIIFGPSSRLDISGSLIASTASSLNFADGTSFSATTPQTTPLLTMSVPIGLQFGTQIGSIVLQGIGGNLGYLQNQGLGEVKPDKTLALVGGDITLNRTYLGAPSGRIELGSVAEPGLVNLKPATNGWSLGYEGIQHFGKIQMTRSFVDASIYEPRIGTRVHDDPRAIAITADLLDLHWRSSTVATNFHAIAQSAAPETIAPTLSTSLVEATQWMTNNGEVILVATAPTSLTYNQFTTASCHVR
>NC_019745.1|WP_015190516.1|4682556_4685181_-|diguanylate-cyclase
MRTSEQIKAEIEEKLGFFPPFFKPAQQNPKILENLWQQTCSTYLDNPLPTLFKEKLFAYLSRYCRVPYCIVCHSCSLYALGINATEVLALLESPLPLAEIEINSHFRVLANATDNLISLSLNSAIEASLIYCSAFVFLGKDVSGYYQTKLGQILGSENYQYLVILIAYIKTCHAWMEAHPKVAYEYAADKRVQDYLALLLNEEPNLAGFFGQYQVQVRCESQNQLEHLADIAKRNQDKAMLRVKAIEVANQELKSEIVDYKQALDALAKTKEALRESEERFRSAFDYAAIGMALVAPNGTWLKVNRAICEIVGYSEQELLATNFQAITHPEDLGVDLHYARQLLSGEIRTCQLEKRYFHKLGHIVWILLSVSLVRDSHGDPLYFIAQIQDITARKQAVDALRESEERWQLALRGNNDGIWDWNVKTNQAFFSARWKEMLGYKEHEIADHLDEWTSRAHPDDIDWVKQVIQDHFAKKTPFYISEHRVLCKDGTYKWILDRGQALWDEAGKPVRMVGSFTDITHRKQAEAALQQANAQLKASVDYLEQRNREIALFAEMSDIFQACLTVEEACRAIATLMPQLFPKITGAVFLNNAPQNLFTAVTTWGSVSLTSHNFFAPDDCWALRRGRSHFVDDTCSGLHCQHINYNLLPAESLCIPMMAQGEALGMLYLSSPESGQLTQVKQQLAIAVAERISLSLANVKLRETLRDQSVRDPLTELFNRRYMVESLELELYRCDRQQQPLAIIMLDIDYFKRFNDTFGHKAGDLVLQKLAQVLQNSIRQSDIACRYGGEEFTLILPETTPEVAYQRAEQLRQEVKQLKVQHDRQLLGEITLSLGIACFPEHGSTPEELLRAADTALYRAKTEARDRVAFVRS
>NC_019745.1|WP_051038469.1|4685555_4685750_-|hypothetical-protein
MRQFLYTMADIFSKVIYGVLLSSVAQARSAAEGYEPAIQVQIDGGAASREYIERNAHRESSTVE
>NC_019745.1|WP_051038470.1|4685749_4686025_-|hypothetical-protein
MIYTGYIGQYFEITNTGWFLFWGAVSTVFYVYILYMVGNLIFKSRENLPHQAYKTMGTIWCLILISWTLYPLAYLVPWAWKAFPAWGHGHL
>NC_019745.1|WP_015190517.1|4686449_4687490_-|polysaccharide-pyruvyl-transferase-CsaB
MRVVLCGYYGKGNGGDEALLATLLQMLPNHVTPIVLSGNPQQTRDRYHVEACDRLNLFSVLQTLRKSDAFVWGGGSLLQDVTSAISPLYYGGLMILAQQLGLKTIAWAQGIGPLKRNTTMKLARRAFGKCTAVSVRDQGSAALLSEWGIPCTLAPDPVWALESAPVPGLWDLPAPRVAVTLRSHPQLTATRLDNFTRALIDFQKATQTCILLVPFQQSQDLAIAEAVASKLPGVHKVLCLEDPQALKGLFRGVEMAIGMRLHSLIMAAAEGCRCFALSYDPKVSKLMIELDLPGWNLTEIPEEHYVICNTLLECYANGNFLTPDQIHSLIDRALMHQDFLHQVLSS
>NC_019745.1|WP_015190518.1|4687631_4687976_+|DUF2499-domain-containing-protein
MHALSIPTWIIHVSSVIEWIAAIWLIWTYGEVTRNRSWWALSVAMLPALVSAMCACTWHFFDNAESLEWLVTLQATMTVVGNFTLLIAAWLIWRSTTEGEVRGQGSGVRDIGKN
>NC_019745.1|WP_015190519.1|4688096_4688417_+|DUF3593-domain-containing-protein
MIQDVSFLIHPSKETLFALSLFPYLGFLWFLTRTPQMPRLALIGFYCTLVFVGVTIPAGIYAQVHYGESLANVDWLHGGAEFFLTLSNILVVLGFRQAIKEREAKS

Crispr_ID: NC_019745_10

• CRISPR_ID: NC_019745_10
• CRISPR_location: 5170418-5172269
• CRISPR_type: TypeI-D
• Repeat_type: I-D,II-B
• Spacer_info: 25 spacers
• Cas_protein_info: cas2,cas1,cas4,cas6,2OG_CAS,csc1gr5,csc2gr7,cas10d,cas3,WYL

Consensus repeat of NC_019745_10

Consensus_repeat	Method
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	PILER-CR
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CRISPRCasFinder
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CRT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	PILER-CR

spacers of NC_019745_10

>10.1|5170455|36|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA
>10.2|5170528|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA
>10.3|5170600|34|NC_019745|PILER-CR,CRISPRCasFinder,CRT
AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA
>10.4|5170671|40|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT
>10.5|5170748|39|NC_019745|PILER-CR,CRISPRCasFinder,CRT
ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC
>10.6|5170824|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT
TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT
>10.7|5170896|35|NC_019745|CRISPRCasFinder,CRT
TCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCAC
>10.8|5170968|47|NC_019745|CRISPRCasFinder,CRT
CCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGAT
>10.9|5171052|36|NC_019745|CRISPRCasFinder,CRT,PILER-CR
CCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGA
>10.10|5171125|33|NC_019745|CRISPRCasFinder,CRT,PILER-CR
ATCGATTAAATCCGCGATCGCATCTAACCAGTT
>10.11|5171195|33|NC_019745|CRISPRCasFinder,CRT,PILER-CR
CCCAGATTTATCGGTTTGTTCCACAGCGATCGC
>10.12|5171265|37|NC_019745|CRISPRCasFinder,CRT,PILER-CR
GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC
>10.13|5171339|34|NC_019745|CRISPRCasFinder,CRT,PILER-CR
AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT
>10.14|5171410|35|NC_019745|CRISPRCasFinder,CRT,PILER-CR
TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC
>10.15|5171482|35|NC_019745|CRISPRCasFinder,CRT,PILER-CR
AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG
>10.16|5171554|34|NC_019745|CRISPRCasFinder,CRT,PILER-CR
CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA
>10.17|5171625|35|NC_019745|CRISPRCasFinder,CRT,PILER-CR
CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC
>10.18|5171697|33|NC_019745|CRISPRCasFinder,CRT,PILER-CR
AGCCAATCTTTGTAAAACTGACCGCTATACCTG
>10.19|5171767|35|NC_019745|CRISPRCasFinder,CRT,PILER-CR
TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC
>10.20|5171839|38|NC_019745|CRISPRCasFinder,CRT,PILER-CR
AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA
>10.21|5171914|33|NC_019745|CRISPRCasFinder,CRT,PILER-CR
CTACTAGTTCAGGTTCGGACAACCACATCTTAC
>10.22|5171984|35|NC_019745|CRISPRCasFinder,CRT,PILER-CR
TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT
>10.23|5172056|35|NC_019745|CRISPRCasFinder,CRT,PILER-CR
TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG
>10.24|5172128|34|NC_019745|CRISPRCasFinder,CRT,PILER-CR
GGATAGCTGACTTGGATCGACTAACTTTTTCCAC
>10.25|5172199|34|NC_019745|CRISPRCasFinder,CRT
CTGGAGGTGTAGTACCTCCAATATAAACAGTAGT

CRISPR arrays and Neighbor proteins around NC_019745_10

CRISPR arrays

The CRISPR arrays of NC_019745_10

>merge|NC_019745|10|5170418-5172269|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTAATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTTTCAATGTTTGGACAGCAGGTAAACCCACGCTGAATTTCAATTAACATAAATCCTTATCAGGGATTGAAACAGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTAATTTCAATTAACATAAATCCTTATCAGGGATTGAAACATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGTATTTCAATTAACATAAATCCTTATCAGGGATTGAAACACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGCATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGTATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCACATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGATATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGAATTTCAATTAACATAAATCCTTATCAGGGATTGAAACATCGATTAAATCCGCGATCGCATCTAACCAGTTATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCCCAGATTTATCGGTTTGTTCCACAGCGATCGCATTTCAATTAACATAAATCCTTATCAGGGATTGAAACGTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGCATTTCAATTAACATAAATCCTTATCAGGGATTGAAACAATTTCGCGCTGCTGCATAAGCTGGGAAGATTTTATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGCATTTCAATTAACATAAATCCTTATCAGGGATTGAAACAAAACCCAATACAGGGCAAAAACCAGCCGCGATCGATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCAATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCCTTACGGATTTAAGGGACTTGCAGCGAATGAACCATTTCAATTAACATAAATCCTTATCAGGGATTGAAACAGCCAATCTTTGTAAAACTGACCGCTATACCTGATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTCGGCGGATTTAAATTTATGTCCTTAACTAAACGCATTTCAATTAACATAAATCCTTATCAGGGATTGAAACAAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCAATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCTACTAGTTCAGGTTCGGACAACCACATCTTACATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGTATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGGATTTCAATTAACATAAATCCTTATCAGGGATTGAAACGGATAGCTGACTTGGATCGACTAACTTTTTCCACATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCTGGAGGTGTAGTACCTCCAATATAAACAGTAGTATTTCAATTAACATAAATCCTTATCAGGGATTGATAC

>NC_019745|10|3|5170418-5170895|PILER-CR
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCACATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGATATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATCGATTAAATCCGCGATCGCATCTAACCAGTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCCAGATTTATCGGTTTGTTCCACAGCGATCGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCAATCTTTGTAAAACTGACCGCTATACCTG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CTACTAGTTCAGGTTCGGACAACCACATCTTAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GGATAGCTGACTTGGATCGACTAACTTTTTCCAC


>NC_019745|10|10|5170418-5172269|CRISPRCasFinder
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGAT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATCGATTAAATCCGCGATCGCATCTAACCAGTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCCAGATTTATCGGTTTGTTCCACAGCGATCGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCAATCTTTGTAAAACTGACCGCTATACCTG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CTACTAGTTCAGGTTCGGACAACCACATCTTAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GGATAGCTGACTTGGATCGACTAACTTTTTCCAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CTGGAGGTGTAGTACCTCCAATATAAACAGTAGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGATAC

>NC_019745|10|3|5170418-5172269|CRT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGAT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATCGATTAAATCCGCGATCGCATCTAACCAGTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCCAGATTTATCGGTTTGTTCCACAGCGATCGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCAATCTTTGTAAAACTGACCGCTATACCTG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CTACTAGTTCAGGTTCGGACAACCACATCTTAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GGATAGCTGACTTGGATCGACTAACTTTTTCCAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CTGGAGGTGTAGTACCTCCAATATAAACAGTAGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGATAC

>NC_019745|10|4|5171015-5172198|PILER-CR
	TATCTTGGAAGAATTCGAGCGGGCTAAGCCTTTTTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTCAATGTTTGGACAGCAGGTAAACCCACGCTGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCTGCTAAATCGCTACTGTAAGGCGCTCCGTA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATGGCACCTCTATTCCTCTCAGTTCGCAAACGATGGGGGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ACTAGCACCACCTTGTTTGGGTACTTTAAAAAACTTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTCGTCTTCTGGTTTCTCGGTGGCTACTTCCACGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAACTCTAACTGCCTCTGTGCCTGTCTTTCCAGAGTCACATTTCAATTAACATAAATCCTTATCAGGGATTGAAACCCAGGAGCATGAATACCCGCAGGTGGCATAACAGCAGGAGCGAAGATATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCAGGAGCATGGGGAAAGAGTATTTATCCGTTGGGA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	ATCGATTAAATCCGCGATCGCATCTAACCAGTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCCAGATTTATCGGTTTGTTCCACAGCGATCGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GTCGCTGGGGTACGCCGAAATCGCAAGCATCTAATGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AATTTCGCGCTGCTGCATAAGCTGGGAAGATTTT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTGAGGAACCAGAGTTAGCGTCTGCTTTAGTAGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAAACCCAATACAGGGCAAAAACCAGCCGCGATCG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CGCTTAGGGCAGTTTGTAGCACGCAAACTGGGCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CCTTACGGATTTAAGGGACTTGCAGCGAATGAACC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AGCCAATCTTTGTAAAACTGACCGCTATACCTG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TCGGCGGATTTAAATTTATGTCCTTAACTAAACGC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	AAGCCCGTAGCATTGTATAAATCCTGGAAGCATACCCA
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	CTACTAGTTCAGGTTCGGACAACCACATCTTAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTTATTTCCAAGGCATTGCGTACGGCTGCGGGAGT
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	TTATGAGCGTTCAAGCAGCAGCAGCAGCGATTGGG
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC	GGATAGCTGACTTGGATCGACTAACTTTTTCCAC
ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_019745.1|WP_015190938.1|5167428_5168247_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NC_019745.1|WP_015190940.1|5168868_5169873_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274976
NC_019745.1|WP_015190950.1|5180323_5181487_+|histidine-kinase	unknown	unknown	gnl|CDD|236462
NC_019745.1|WP_015190932.1|5158226_5159090_-|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl|CDD|379100
NC_019745.1|WP_015190935.1|5164833_5165853_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl|CDD|375747
NC_019745.1|WP_015190933.1|5159196_5161323_+|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl|CDD|187841
NC_019745.1|WP_015190951.1|5181673_5182084_-|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl|CDD|239517
NC_019745.1|WP_015190936.1|5165858_5166563_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl|CDD|187842
NC_019745.1|WP_015190942.1|5172477_5173299_-|YwiC-like-family-protein	unknown	unknown	gnl|CDD|379525
NC_019745.1|WP_015190946.1|5175231_5177466_-|glycoside-hydrolase-family-57	unknown	unknown	gnl|CDD|224366
NC_019745.1|WP_015190937.1|5166821_5167439_+|2OG-Fe(II)-oxygenase	2OG_CAS	-	gnl|CDD|379309
NC_019745.1|WP_015190941.1|5169886_5170156_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_019745.1|WP_041918735.1|5168257_5168851_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|273040
NC_019745.1|WP_015190948.1|5177901_5178558_-|DUF3386-domain-containing-protein	unknown	unknown	gnl|CDD|371771
NC_019745.1|WP_015190943.1|5173718_5173967_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190944.1|5173994_5174231_+|hypothetical-protein	unknown	unknown	unknown
NC_019745.1|WP_015190947.1|5177587_5177818_-|NifU-family-protein	unknown	unknown	gnl|CDD|376458
NC_019745.1|WP_155824079.1|5178677_5179958_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NC_019745.1|WP_015190945.1|5174554_5174992_+|OsmC-family-protein	unknown	unknown	gnl|CDD|274650
NC_019745.1|WP_015190934.1|5161513_5164798_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl|CDD|274469

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_019745.1|WP_015190938.1|5167428_5168247_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	3.6e-67	221.3	0.0
NC_019745.1|WP_015190940.1|5168868_5169873_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	2.7e-104	343.3	0.0
NC_019745.1|WP_015190937.1|5166821_5167439_+|2OG-Fe(II)-oxygenase	2OG_CAS	-	1.4e-130	427.6	1.5
NC_019745.1|WP_015190941.1|5169886_5170156_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.1e-30	100.4	0.2
NC_019745.1|WP_041918735.1|5168257_5168851_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	5.7e-49	161.4	0.1
NC_019745.1|WP_015190935.1|5164833_5165853_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	9.5e-95	311.8	0.0
NC_019745.1|WP_015190933.1|5159196_5161323_+|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	2.3e-87	288.0	0.2
NC_019745.1|WP_015190936.1|5165858_5166563_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	8.8e-77	252.1	4.2
NC_019745.1|WP_015190932.1|5158226_5159090_-|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	1e-14	49.6	3.5
NC_019745.1|WP_015190934.1|5161513_5164798_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	1.7e-183	606.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_019745.1|WP_015190938.1|5167428_5168247_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.23097e-55
NC_019745.1|WP_015190940.1|5168868_5169873_+|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	1.60965e-152
NC_019745.1|WP_015190932.1|5158226_5159090_-|WYL-domain-containing-protein	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.93807e-09
NC_019745.1|WP_015190935.1|5164833_5165853_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl|CDD|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	4.6657e-174
NC_019745.1|WP_015190933.1|5159196_5161323_+|type-I-D-CRISPR-associated-helicase-Cas3'	gnl|CDD|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.79138e-84
NC_019745.1|WP_015190936.1|5165858_5166563_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl|CDD|187842	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family.	2.60616e-78
NC_019745.1|WP_015190942.1|5172477_5173299_-|YwiC-like-family-protein	gnl|CDD|379525	pfam14256, YwiC, YwiC-like protein. The YwiC-like protein family includes the B. subtilis YwiC protein, which is functionally uncharacterized. This domain family is found in bacteria, and is approximately 130 amino acids in length. There is a single completely conserved residue G that may be functionally important.	1.76371e-28
NC_019745.1|WP_015190946.1|5175231_5177466_-|glycoside-hydrolase-family-57	gnl|CDD|224366	COG1449, COG1449, Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism].	6.42703e-178
NC_019745.1|WP_015190937.1|5166821_5167439_+|2OG-Fe(II)-oxygenase	gnl|CDD|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	3.96803e-08
NC_019745.1|WP_015190941.1|5169886_5170156_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.62547e-33
NC_019745.1|WP_041918735.1|5168257_5168851_+|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.10103e-56
NC_019745.1|WP_015190948.1|5177901_5178558_-|DUF3386-domain-containing-protein	gnl|CDD|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	1.20336e-129
NC_019745.1|WP_015190951.1|5181673_5182084_-|8-oxo-dGTP-diphosphatase-MutT	gnl|CDD|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	5.44045e-57
NC_019745.1|WP_015190950.1|5180323_5181487_+|histidine-kinase	gnl|CDD|236462	PRK09303, PRK09303, histidine kinase.	0
NC_019745.1|WP_015190947.1|5177587_5177818_-|NifU-family-protein	gnl|CDD|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	3.77827e-31
NC_019745.1|WP_015190945.1|5174554_5174992_+|OsmC-family-protein	gnl|CDD|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	2.37445e-64
NC_019745.1|WP_015190934.1|5161513_5164798_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl|CDD|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	0

Protein sequences

>NC_019745.1|WP_015190941.1|5169886_5170156_+|CRISPR-associated-endonuclease-Cas2
MYIVVSYDVSEDKRRTKIHSILKSYGQWVQYSIFECNLTDSQYARMRSRLSKLIKAEDSIRFYFLCGCCQGKVERLGGEQPRDETIFFA
>NC_019745.1|WP_015190940.1|5168868_5169873_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYITQQDAFIGKTDERLSIKANKQTLLDVPLIKVDGVVVLGRATVSPAAISEFLERHIPLSFLTATGKYLGRLEPEVTKNIFVRKAQWQAIGESTQAVHIVKAFVRGKLKNYRNALLRAQRSNTELDLNNSITRLEQAIAPIENTDTIPSLRGLEGAGSAAYFGSLKQLIRAEGFTFTVRRRRPPTDPVNALLSLGYALLRHDVQSAVNIVGFDAYLGYLHVERYGRPSLALDLMEEFRPLVVDAVVLSALNKRSLLPTDFTTEPLSHAVSLTQEGLRTFLRLYEQKKQSKFKHPVLGRQCTYQEAFEIQARLLAKYLMGETDKYPPLILK
>NC_019745.1|WP_041918735.1|5168257_5168851_+|CRISPR-associated-protein-Cas4
MHDTDYIPIAALNQYTYCPHRCWRMFCAGEFSDNAYTIEGTSLHDRVHTLGDGHREETWQIRAIWLKSERYGLIGKADLIESTDGHFYPIEYKRGKKGEWDNDEMQVTAQALCVEDMTGSPVTQGYVYYAQSHQRQLVEITQELREAAIATIEAVHNLLETGKMPPAIYGQRCTGCSLYSQCLPQATAKVQRYQEAS
>NC_019745.1|WP_015190938.1|5167428_5168247_+|CRISPR-associated-endoribonuclease-Cas6
MPHSLVLNLLPQSPIYPAYLSGRHLHALFLTLVSSVDKTLGDRLHASSADKAFTLSPLQINKSKHNLQWEHQQLIPAGTPCWWRISLLDDTLFNKLTQLWLNLNPKHPWHLGSADLHITSILGTPQSTQPWANAATYAQLYEQASDIERELAFRFYTPTCFRQGEFDAALPTRECVFNSLLHRWQKYSGISFDPDLTAVIFPSYFNISTTMIADSRSKFIGCVGEITYRVLGEVEPVIIKQINTLADFALYCGAGRKTTMGMGMLRRIRLTK
>NC_019745.1|WP_015190937.1|5166821_5167439_+|2OG-Fe(II)-oxygenase
MKYYYQHPNAFSSNYLKNLCGEIRACSYFAVNNLNRDFVNTKGFSVVFQRSHLAKVVQQFPFFKSYLDQALLPNCNAFYLNPLLLKEGSRVDPHIDRSLRSYCKTIEPPAIVSVLYVQVPPDLQGGELVLCCNKRQVGQIKPQTNTLLYFQGDLTHSVNAVKTPGTRLSLVCEQYSLNEVELSEIPQFTVESRTAQSKTKKRYAS
>NC_019745.1|WP_015190936.1|5165858_5166563_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MALIYRCQLELHDSLYYATREIGRLYETEPVIHNYALCYALGLVDSEVYSTTVAEEHSYRYFCPEQIPKYKEHLTPLNQQGIYVTPARSIEHTAMLNTWKYANNNYHVEMEKTQKNIPSFGRAKEVAPESLFEFFVICQKEIQLPKWIRLGKWMSKAEVKQLDYLEVKTSTTEENFTFPYPLNPLDVMFTHQIINYDVVNMPPVSLIQNIRIQGHCYQYKHLQIPARMQYRFHG
>NC_019745.1|WP_015190935.1|5164833_5165853_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MQFLKTVDAKFFHNEIPAKPMGKYAHFITIRVTESYPLFQTDGELNKARVRAGVNNPEPISRLAMFKRKQSTPERLTGRELLRNYQIGDWEKCDYNVDFSKTTPDCILYGFAIGDSGSEKSKVVVDTAYSITSFDDSHLNFTLNAPFENGTMSRKGEVTSRINSQDHILPQIFFPSIVTLKDPTEASFLYVFNNILRTRHYGAQTTRTGRVRNQLIGIVFADGEIVSNLRWTQKIYDLLQDKGQINPPDPLSEDDVLQAANHAITELMTQECISHSDFIGDNFQRLLIEVKSITGDENRLKELLNKANTESSTYAKQYILKPEKEKKAENKTRASAAKE
>NC_019745.1|WP_015190934.1|5161513_5164798_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MSEDNFEEFLEISNFDNDDEEQDTPLQRELLTIRLFKNAIREAAGNEDDLIITSFAENVLPNLIHQLVGATAKGGQFTEDRKAENKNVERSKHDQSFISHLLNGLFPTYRIVRKLRSVDIGTNRVKRQCEELEIRLFIAAYILHDFDKFPYYSNWLLTTSDKFVNRDWRKQPPHKSDALNFGRGFVRENIIVFGLDKFLGKDWESYIDDVVWLSHNAGEKYDSDRGLEVRGLQCRLDTRVRGVLQTLVRVADLFASVIKYPQDIESNRHSDGLPELLNDLSHGQLQFSYHALSDNRGVLTNILNNALIDAHPKKYYIPLLYLSNGVVYLANVDAPAINTDDISAQVIAKIKSLCSNQLTKRQIGFSRDGKGLKFADYYWLFFSVDELMKVSINAACRIIPDTKVASASKRSQSLQNFQRNGDLSRGLNLVFGNEIQIDRLAEFGDTLCRGIWGKWCDRAKEYQKKFSKNQRKVIPDLDLTQKLAEYLGLSQELTAIKQIQSLKKTGGVPLDWYYLAAKYYENNPGKDLAQNIELMEGMVTCAANLIQPIIAELEIPDGWDDLRTYVNRIISLPTGVVIEPKPEQFLVELNRYHAAKVTTGRGRENVCAMSSSAYTVTEQMESATLFAPQVYSNRQILFNTQAAKRQICSIWSIEIMLRQILMSKTNATGADFESQKYRYLYLYPTYFFTPETNKFLQKAYNSIAQTRFDAELRKHFVSKEQVANFTINNYQQVDDLLIKQNIQPEDDRTFKINYPEDETLTFFFIGLPPGRDPTDTESWIMPAWLALTLPLVMDVKVVASESPVPPFINGADFEQTTLLDGEHQAIRSLVKKDSYRLDSILPRESQKFSPLNALTAAYCIHLEVNRKKDGNPDWGKLGDLARDLETNPLYVFHYLNKWLRKQDKIETVPIAKIRLYLNFYYYFEPEGDKVNQLRQLTQLFRRFYRAKSQYAKANAILKPIDEAANVILKFDKTLANDNQCLTDVVYARVAKLMNNVRRGAAEGKPTLKLVDGKWKPALTPEEERQAVYAFAEYFVNEIFEGSFKGDRARLAGTQLNLIRDTCEYLYRLEDDKERQERKVVEPDEISDIENSEVA
>NC_019745.1|WP_015190933.1|5159196_5161323_+|type-I-D-CRISPR-associated-helicase-Cas3'
MSNYCITLKPVYSQTVPTPEGVKLPEDWSLSWHQAATLEALRNYDVVFNTAMTGDGKSLAAYLHAMTSRISTLAMYPTNELARDQEKQVHNYKDKFQPKHDPQIYRLNAAILEDFIITNKLPTKQSGLINLSNQAEILLTNPDIFHYIHDFRYLRRYKKGDKLKGENADKLFRKIDDNYNLFIFDEFHVFSSPQVASIFNAILLIKHTTTPGKKFLFLSATPSELLQEFLTRSGISYKIINPVSQNAYCFSPTNDNWRQISQSITLNFPKGLEPSMRSSYDWLQENAKSVILKFFQDYPHSKGAIILNSIAAVKKLKSYFEEIFEPLGFKVRENTGLTGETEKAESVAEADLLLGTSTIDVGVDFRINFLVFEGADAGNFIQRFGRIGRHPGFPIYQAYALVPQFIVERLFEVESHPLRDGENYDRVTFTEAIRLHYPFVNEFRQYPKRWGAIQSACMHQELKPLSSQYPETATNFKEDVENAFDVNIWHKYKQITQCLETSKKNKKIIEEARSFRGSSQLDCAIYDATNPNEAEHERFKIYNLPGILSNFIFEWMNKAEFMRQAEAFGVNTTRIQETLCCLRLTGYRDVREDWRFYYPEDISEIAALGKVHVLQGLEIYQPHGSGINRISDAVSNRGLVCFISDRDRTYLRAKLGLPIHFQAYPLADKYSSSDRRLPPYTIAFGKSALLLETLLWYWKPKKNEGWIC
>NC_019745.1|WP_015190932.1|5158226_5159090_-|WYL-domain-containing-protein
MSRKGQSITLSISERDKAQLETIARELGMLWGDRPNISKLVEAIARRQLLIASNSNWSSERIQALARSFQALTDTGQVEQAQIIANLLLERSEVSLPLRRDIERFLENLPPAWRLEIDRYLLRHQPFQLSYQDAAERIWNFTVRCGKITLHEKRQYLDCWCEEEGNSDIPELAHNWSLRLDRITDAAVIPVAGHWRSQLDRIEVEMHLLEGLAFAYQAKPEDTIVEWLADNQRIRRVVRQVTSSFWFLREVMQYAPDCVIVSPESMRDRLTAKLRTLCQLYDIETNS
>NC_019745.1|WP_015190942.1|5172477_5173299_-|YwiC-like-family-protein
MTPSQPNSIQQTSTSHAPIWYRPTFSPEHGVYVVLFVSFLTGAAAAQQWTLATTLALICAFAGFQAEHPLVLQIKQRRSWKPRFLVWGGIYTAIALSLAVYLYLQIPVLLWLYLGAIAAFAIDAISVFYRQQKSVTNELLTFAAVCLAAPFAYVATTGTWVVSVIGLWILNTLFFSSAIFTVKLRKPKTASLVPGLIYHAIASVVVGVLWYIGWLTLIAAIAFGIVLLKLGLILVRQDWYRTTRIQNVATLETVSALLFLAIVAISLLPARLS
>NC_019745.1|WP_015190943.1|5173718_5173967_+|hypothetical-protein
MSLQSSNQICRLTPALEGAIAASWNPVCHITYTRDTWVKLLQSPSEYAFDEAKLLCQESSDTWLAWVPDHGEVLLDRSDFYC
>NC_019745.1|WP_015190944.1|5173994_5174231_+|hypothetical-protein
MNTESVIDWDEMFEYLPGTIVELKNNPGILYRIDYYEAMMVPPIWLVGDPRPRYPGELRIVSRREVQSCELEPQPSLV
>NC_019745.1|WP_015190945.1|5174554_5174992_+|OsmC-family-protein
MPALQRTASATWNGTVKEGQGQISAASGVLQNIPYSFATRFENQPGTNPEELIAAAHAACYSMALTLTLNQKGYQPQQVQTQATCTIESQDGGFKITKMQLETQGDISGIDAETFNQIAQEAEQICPVSNALRGSVAIDLKASLK
>NC_019745.1|WP_015190946.1|5175231_5177466_-|glycoside-hydrolase-family-57
MAHPLYVAFIWHQHQPLYKGRDSSISLSAHSQYRLPWVRLHGTKDYLDLVLLLARYPKLHQTVNLVPSLILQLEDYIAGTAFDPYLAVSLTPTEQLSQEQRQFIVEHFFDANHHTLIDPHPRYAELYHQRQDKGKAWCLENWQLQDYSDLLAWHNIAWIDPLFWDDPEIAAWLQQGRNFTLSDRQRIYSKQRDILGRIIPQHRDMQHAGQLEVTTTPYTHPILPLLADTNSGRVAVPNMTLPQHRFQWAEDIPRHLYKAWELYQDRFGREPRGLWPSEQSVSPEILPYIVKQGFNWIVSDEAVLGWTLHHFFHRDGAGNVCEPELLYRPYRLETAAGDLAIVFRDHRLSDLIGFTYGSMPPKQAATDLVGHLEAIAHSHKHRQPDQPWLVTIALDGENCWEFYPQDGKPFLENLYQTLSDHPQIKLVTVSEFLEKFPPTATILGEQLHSGSWVDGSFTTWIGDPAKNRAWDMLAEARAVLAKHPEATEENNPEAWEALYAAEGSDWFWWFGEGHTSNQDAIFDQLFREHLCGIYQALNEPIPLYLRQPVESHEVQGDHRPQGFIHPVIDGMGDEQDWDRAGRLEVGGARGTMHKSSAIQRLWYGVDHLNFYLRVDLKQGVQPGRDLPSELHLLWFYPDRTMHNSPVPLEDIPNEAPLNYLYHHQLEINLLTQSVHFQEAGEHHQWHPRYSRASVALNKCLEIAVPWADLQMPPDYPLRLVLVLADEGSFRSYLPENTLIPIEVP
>NC_019745.1|WP_015190947.1|5177587_5177818_-|NifU-family-protein
MELTVDNVETVLDELRPYLMSDGGNVELVELDGPVVKLRLQGACGACPSSTMTLRMGIERRLREMIPEIAEVEQVL
>NC_019745.1|WP_015190948.1|5177901_5178558_-|DUF3386-domain-containing-protein
MTQQLSATELFKTAYENRYTWDENFPGYSADVELKQGSEVYTGHIRINRDWSVEVTGIDNEEVQESVYTQLRDIVTHRKRSSFAQSHSKHEFNLGETDASGAVEILVKGDSMGSNYKIRGTEICQVSRVMGRMAFVIDTHESLDTENGYVASRYDAVFRNPQTNDVIRVLKFEDTYEKVGDYYVMTKQVIHSYENGERTTTEFNFSNIKLLEPATVEA
>NC_019745.1|WP_155824079.1|5178677_5179958_-|S-layer-homology-domain-containing-protein
MFAADPRLQDNPAIAFGTGNNNSNETALNTSVQLPADFPSEIPRYPNAQLQQVTASETRWVTPDPINVVQSFYQNQFQANNWELRQPNEQQGTLEAQRNGLRVTLTFSVITNQNSIAQANGAGNTEFTLQYTRDTTATTSPSPDASDLANVPQPGDPEFIGPVLPQQADQTAQTANSVTQSTAEQAFNDISQVPQELRQYLQDLSALGVLPLQATSKSNSATNQFEPNKTITRREYARWLVAANNRFYTDNPAKQIREASASTQPAFQDVPASDPDFAVIQGLAEAGLIPSPLSGSSTTVLFRPDAPLTREQMILWKVPIDTRSSLPNASVDAVQQTWGFQDAAKIEPRALQAVLADFQNSDRANIRRVFGYTTLFQPKKTVTRAEAAAALWYIGTASEGVSAQDALRLQQSSPSQATSDAPATRE
>NC_019745.1|WP_015190950.1|5180323_5181487_+|histidine-kinase
MQVFPQKLSDSHAPLQLLLFVDERSGSQQQIQQIYHYLKELQEEYAFELQSIDVGEQPYFAEHFKLVATPALIKIYPEPRQTLAGSNLIAQLQSWWPRWQQAVAEKLQSQNAKPEIVKSSQNGMRSIADSAEVILMADEIFSLKREQEKLLEQLQFKDQVIAMLAHDLRNPLTAVSIALETLEAGLTREAQTPLSPSLVAQLFRQARTQARSIDKMIAGLLQVARGTAAELDIQPQKLELEKLCHDVLSQLSDRANAKSLKIETDIPRDLPRTYADQEKVRQVLINLVDNAIKYTPSNGTIRVLALHRTTQKIQLSVCDTGPGIPEENRDRIFEDRFRLERDKAKDGYGIGLCLCQRIIRAHYGQIWVDCPPIGGSCFHFTLPVYPN
>NC_019745.1|WP_015190951.1|5181673_5182084_-|8-oxo-dGTP-diphosphatase-MutT
MTIPHKIIGVGVIWNDREQILIDRRRPEGSLGGLWEFPGGKIEPGETLEACIKREIKEELGIDIAVGKHLMTIDYTYPHLQVTLTVHFCRYLAGEPKPIECDEVRWVSLDEIEQYSFPTANTQIIAAIKQYAASRN

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019745_6	6.9|3443539|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT	3443539-3443573	35	MF668280	Mycobacterium phage Phabba, complete genome	94102-94136	8	0.771
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP048352	Raoultella ornithinolytica strain 23 plasmid p23_C, complete sequence	1057-1087	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	MN891677	Klebsiella pneumoniae strain ZZ41 plasmid pZZ41-KPC, complete sequence	15168-15198	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP022349	Klebsiella michiganensis strain K516 plasmid pK516_KPC, complete sequence	5591-5621	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_MH192342	Klebsiella grimontii strain WCHKG020121 plasmid pKPC2_020121, complete sequence	93515-93545	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP020359	Klebsiella oxytoca strain AR_0147 plasmid unitig_2, complete sequence	71716-71746	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	84106-84136	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP022275	Citrobacter freundii strain 18-1 plasmid pBKPC18-1, complete sequence	98631-98661	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	MN891679	Klebsiella pneumoniae strain ZZ40 plasmid pZZ40-KPC, complete sequence	68515-68545	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP038275	Raoultella ornithinolytica strain WLK218 plasmid pWLK-101716, complete sequence	38980-39010	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	NZ_CP023186	Klebsiella michiganensis strain K518 plasmid pK518_KPC, complete sequence	59936-59966	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	20449-20479	9	0.71
NC_019745_4	4.1|1667021|31|NC_019745|CRISPRCasFinder	1667021-1667051	31	MT108213	Klebsiella pneumoniae strain ZZ100 plasmid pZZ100-KPC, complete sequence	66194-66224	9	0.71
NC_019745_6	6.4|3443180|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT	3443180-3443214	35	NZ_CP041149	Acinetobacter baumannii strain CUVET-MIC596 plasmid pCUVET596, complete sequence	2487-2521	9	0.743
NC_019745_6	6.4|3443180|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT	3443180-3443214	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	396968-397002	9	0.743
NC_019745_5	5.22|2250165|33|NC_019745|CRISPRCasFinder,CRT	2250165-2250197	33	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	599973-600005	10	0.697
NC_019745_5	5.51|2250166|33|NC_019745|PILER-CR	2250166-2250198	33	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	599973-600005	10	0.697
NC_019745_6	6.44|3446055|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT	3446055-3446091	37	LN713927	Pseudomonas fluorescens SBW25 plasmid pQBR55, complete sequence	154656-154692	11	0.703

1. spacer 6.9|3443539|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT matches to MF668280 (Mycobacterium phage Phabba, complete genome) position: , mismatch: 8, identity: 0.771

gtgtaagtcagttagaatctgacctacagcgcctt	CRISPR spacer
ggagaagtcagttcgattctgacctacagctctta	Protospacer
* . ********* ** ************* *.* 

2. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP048352 (Raoultella ornithinolytica strain 23 plasmid p23_C, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

3. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to MN891677 (Klebsiella pneumoniae strain ZZ41 plasmid pZZ41-KPC, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

4. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP022349 (Klebsiella michiganensis strain K516 plasmid pK516_KPC, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

5. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_MH192342 (Klebsiella grimontii strain WCHKG020121 plasmid pKPC2_020121, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

6. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP020359 (Klebsiella oxytoca strain AR_0147 plasmid unitig_2, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

7. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP021328 (Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

8. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP022275 (Citrobacter freundii strain 18-1 plasmid pBKPC18-1, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

9. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to MN891679 (Klebsiella pneumoniae strain ZZ40 plasmid pZZ40-KPC, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

10. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP038275 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-101716, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

11. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to NZ_CP023186 (Klebsiella michiganensis strain K518 plasmid pK518_KPC, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

12. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

13. spacer 4.1|1667021|31|NC_019745|CRISPRCasFinder matches to MT108213 (Klebsiella pneumoniae strain ZZ100 plasmid pZZ100-KPC, complete sequence) position: , mismatch: 9, identity: 0.71

cgtggcttgttgtgctggtatttctccttgt	CRISPR spacer
cggggctttttgtgctggtattttttggcca	Protospacer
** ***** **************.*.  .  

14. spacer 6.4|3443180|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041149 (Acinetobacter baumannii strain CUVET-MIC596 plasmid pCUVET596, complete sequence) position: , mismatch: 9, identity: 0.743

gctatatttaattcttttttcacccaattacgagc	CRISPR spacer
aaaatatttaatggttttttcacccaattaattgg	Protospacer
.  *********  ****************   * 

15. spacer 6.4|3443180|35|NC_019745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.743

gctat-atttaattcttttttcacccaattacgagc	CRISPR spacer
-taataatttaattattttttcaccctattaataat	Protospacer
 . ** ******** *********** ****  *..

16. spacer 5.22|2250165|33|NC_019745|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 10, identity: 0.697

gcgcgtaaagcaatgaatcaaatcacagaacac	CRISPR spacer
agagataaggcaatgaatcaactcacagaatta	Protospacer
. . .***.************ ********.  

17. spacer 5.51|2250166|33|NC_019745|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 10, identity: 0.697

gcgcgtaaagcaatgaatcaaatcacagaacac	CRISPR spacer
agagataaggcaatgaatcaactcacagaatta	Protospacer
. . .***.************ ********.  

18. spacer 6.44|3446055|37|NC_019745|PILER-CR,CRISPRCasFinder,CRT matches to LN713927 (Pseudomonas fluorescens SBW25 plasmid pQBR55, complete sequence) position: , mismatch: 11, identity: 0.703

ggaattagtaccgattgctagcgatcgctatgaggat	CRISPR spacer
gtctggagtaccgattgccagcgatggctatgccgtc	Protospacer
*     ************.****** ******  * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	858977 : 869012	11	Hokovirus(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_019745|858977:869012|DBSCAN-SWA
ACTAGTAAGATTCTGATTGTCTGTTCGCGATCAGACATGATTCCTCCCGAATAACTTGTGGCACGATCGGGAGCGTAAACCAAAATGTACTTCCCTGACCTACGATACTATCTACTCCAATTGTGCCTTGATGCGCTTCTACGATTTGACGACACAAATAAAGACCTAAACCCGCACCGCCACGCCGCCCGCGCCCTTGAATAAAGCGGTGAAAAAGATATTCTTGCTCTTGAGGGGCAATTCCAGGACCGCGATCGCTGACACTTACACGCACGACGCCGCTATTTTCGGCAACAACTGCTAACTGCACTTGACTATTTAGCTTGCTAACGCGCACTGCATTACTGAGAAGATTTTGAATGACTCGTCCAATTTCTAATTCATCGCCATACACAATTGGTAAGGGCTGAGTAAGTTGCAACTCAAAGTGAAGTTTGCTTTTTGAGGCGATGCGCTCTTGATTGATTGTTTTGGTGAAGATCTTATTCCAGTCGAGAGGCTCGTAAATTAAATTTTTACTACCCGCTTCATAGCGCGAAACTTCGAGTAGCGCTTCGACAAGTTTCAGGAGGTCTTCGTTTGTTTGATAATATTCTTCAAGTATTTCGCGCCAGGTATCGCTAACAGAACCAAACGCGCCATGTAACATTGAGCGTAAAGTACCGCGAATTGCAAGTAAAGGAGTGCGTAGATCGTGCGAAAGCGACGCAATCAGATCGTCAAGCTGGCGATTGCGTTCGTCACTGCGAGTTTGGCGCGAGTCAATTTCGCTAGCCATGCGATCGAGAATTCGCGCTAGTTGACCAATTTCATCCGCAGCTTGAAAATTCAAACGCGGCTGCATTCGCCCAGTTTCCCATGTTTGTGCTACGGATGCGAGTTGATGTAACGGGACTTCAACGCGGCGATGAAGTAGCCACAGGTTTATCCCAATACCAAGTAATAGAAGTACTGGCGCGAGAATGTTGAAAACGCGAAAGCTTTGATCGAGTCGATAAAGTTGTTGGTTGCGTCGGGCTAAAAGATCTTCCTCGCGTTGCAGCATTGCCATAACCTGCGATCGCAGCGGATCGAATAACAGTTTTCCTGCAAGTGTCGTATTCGATTCGGGTGCTGCACCCAAAACAACCGGCTGCGCAAATTCGCGTTGCCAGCGATTATAAAGTGTAATGATTTCATTCACGCGATGCTGTTGCTCTGGATTATCTGCTACGAGGTCGTCAAGCAGAGCAAGGGTGTTATTGAAGTCAATTTGTCCTGATTTATAAGGCTCTAGCGAAGATTCTGCCCCTGTTAGCAAGTAACCGCGTATTCCTGTTTCTTGATCTAAAGCAGCATTGAGCAACAGTTCAGCTTGACTTTGAACTTGTAAAGTGTGTCGCACCCAACTTAATGTATCTTGACGGCGAAATTCTAGCCAAAACCCTATCCCTGCTCTTGCACAAACGAGGATCGCTAACACCAAAACGCTGGTGTATAAAGGCGCAAGCAGCCGAGTTCTTAATAGTATAAATCCAGGAAGACGCGGCACGATCGCCGATTACACTCCATGAAGAACAAATTAACCTACCCTATACATACCAAATGCTCCTCCAATCTGCTTAATGACTTTTGTAATTTGAAGATATGTTCAAGGGTAAATAGACGGCAAATGTGCTACCTTTTCCTAACTCACTGTGTACCTGTAAGTTACCTCCGTGTGCTTGCACAATTGCTCGCGCGATCGCAAGTCCTAACCCTGAACCACCTGTATGACGCGCGCGATCGCTGCGTCACAACCAAATCTCCCTCAAATAAACCGCTCTCAACTGCAACCATGTCGCCAAAAGTGTCACCCAAGGTCACTTCAACAGGCATAGGAGTTACGCACTTGCCCCCTAAATCCACGCCACGTGCTACAACGGGGAACACCCCCAAGGGCGCAGTGGCTCCCCACCTGTGGGAGACTTATAATTTGATTCTCCCTAAAGAGGGCTAGGCGGTTGAAACCGCAGCAATACATAATACAAAACCTATTTTCATAGGTTTCTACGATCCTAATTTTTCATAGTCCACGGAGGTGGACTTTGTTTGTCAAGCTTAGCGAATTTATTCGCCAAGCTCTACAGAAGCTGTAGCAATCATTAACCCCCATACAACCCCAAAGCGAACTCTTGTAGCACGGGAAATTTGATATCCTGCGGATGTCAGTAAAGAATGAAACTCTGCTTGCGTGTAACATTGCTTGTAAGCTGGGTCAAAAATAGGCAACACCCAATCGCAGATTCTACACAGCAAATAATCTTTACACCAATCCAAAATAACGACGCAACCATTCGGTTTGAGGACGCGTTTCATCTCTAGCAAAGCCGCATGAGGATCGTCAAAATAGTGAAACGAACTCGCACACACGATCGCATCGAAACTTTGATCGGCAAAGGGCAACTTTGATGCGGGCGCAACATAAAACGAAACCTGCGGATAATTCTGGCATTTTTCGCGGGCGATCGCGAGCATCTTCTCGGAAATATCCACCCCAACGATCTTTTGCTGAGGATTATCAACGAGTAGTAGCCGTTCAAACTCTCCTGTTCCACAGGCAACATCGAGTACAGTTGCAGTTGGTGAAATATCTGCCCAAGCTTGGAGAAACGATAACGTACTACCAACATAGTGACTCCAGCGTTGATCGTAAGTTGCTGCTATGTTGTCATATTGCTGACGAACCTTAGTTTCAGTCATCGTGTATCGCCTTGTCCGTGTCTTCACCCTAATTCCTGCTTATTGCTGATACCAAGCTTGTCGCCAGGCTTGCATCTGCTTAATTTCCGCTTCTTGTGAATTGATAATTTCTTGCGCCAATTTTCTAATTTCAGGACGCTGGGATTTATTCAAAGCATCTTGCGCCATAATTACAGCACCTTCGTGATGGGGAATCATCGCATCGATGAAACGCCGATCAAATTCAGCATCAGCGGCTCCTAAATCGCCATGCATCATCATGCTATGCATTTGCTGTTGCGACATTGGTACCGTCTCACCTGTCTGAGGATTGTAAGCAACTGGGGTGTTACTTGCTTGCGGATACCATGCTTGTCGCCATTGCTGTAGCTGTGCAATTTCCCTCTGCTGTACTGCAATAATCTCTGTTGCTAGCTCTTTAATTTCTGCACGTTGCGATTTCTCTAAAGCTGCTTGCGCCATTTCTACCGCACCTTGATGGTGTGGAACCATTGCATCAATAAACCGCCAGTCGTAGTTTGCATCCGCAGGACCTAAATCCATTGCCATCGCATGATTCATACCATGATGCGGCATTTGCTGTGTGCTTTGTGTGTTTGCTCTTGGTGTTGGAGTTGGCGGAACCGCTGCACAAGATGCGATGAACCCACCCGTTGCGGCGATCGCTACAATATTTAACGCAAAACGCTTTTTTAAAAGCATCTTTGAATTCTCTCCTCAGAACAAACATTTTCATCTTATATTCTCTAGTTAACTAGAGAGTCAAGAAATGAGGCGATCGCGCCACACCTTACTTAGTTTGCTCCACAAAAATGAAATAAAGATGAAATTGCGCTCTTCAAAGCAGCTTTCTCTCTCTTTCTTCTACTCACGACTAACTTACCGGAACTGTAAAATAAAACTGGCTTCCCTGATTTTTACCTGCGGATTCAGCCCAAATTTGTCCTCCCAAACCTTGAACGATCTGGCGACAAATTGCGAGTCCTAGCCCTGTTCCACTAGAGATGCGTCGAAGATATTCTTCTTCTTGCGAAAACCGAGTAAATATAACTTCTAACTGGTTTGGTTCAATACCTCTACCCATATCCGCAACGCACACCTCAATCATCGAAATGCGTTTAGATGCTAGCTTATTTTTTAGCGTGCGCGCGCTAACTGTCACTTTTCCACCAGGTGCAAACTTTAAAGCATTATCAATCAATTTAGTAAAAACTTGAACAAGTCCTTCGCCATCTGCTAAAACAAGCGGTAATTTTGGCGGTAGTATTACTTCTATTTGCGCTAACTGTTGTGGCGACCACCAAGCCTTGAGGCTATTCAGTGCTAAGTTAAGACATTCCTGGAGTGAAATTGGTTCTAATTGCCAGTGAATTTGACCACTTTCTAAGCGCGAGAGTGTAATAAAGTCTTGAGTGAGTTTCCGCAAACGTTCAGCATCGGTCAAAGCGGTTTGCAGCATGACTTGCTGCATTTCTAACGTCATCTCTGGCTCGGTTGCTAGAGTTTCCAAACAAATTTGGATTGTCGATAAAGGAGTACGCAATTCATGACCGACGATCGCAATTAAATTACTGCGAGTGCGTTCTAATGCGGCTAATTGATTATTGAGTTCTTCAAGGCGAATATACGCTTGTGCTTGAATTAAAGCAACACCGACTTGATTGGCGATCGCTTCAACTAAAGCAATATCATGTTCTTGCCAAATATAAGGTTCTGCGCCGGTGTGATGAATTTCTAACATTCCCAACAACGTTTCTTGGTAAATCACAGGAACGAGTAACCAAGAACGAATTCCCGAACGCGATAAGAGAGTTGTTAACGCCGGATTTGCTTGTAAACTCGGAAGTTTGGTGACATCTGTAACCGCGATCGCTTTTTCGGTGGCTACCGCCGCTTGAAATAAAGGATTCTCGACTAAAAGCCAAGTTTCCCCTTGTAATGATGTCATTCCAGGCGCTAGCGCTTCGTACTCAATCGTTACATCTTGATAAATGCGATCGCAGCGGTAAAGTAAACAGCGACAATGCTCAAAAGTTTGCCCTAACTCTTGTACAGCCGTTGTGAGAATCTCGTGTAAATTCAGCGATCGGCGAATGGCGGCGGTGATCGAATTTACGAGACGTTCTTGGCGTTCTTGCGTTGCGATCGTACGATAAGCTTTCAACAGACGATACTGACTTGCTTGCAAATGCGTCACCAAGCGTTCCGTAAATGTGACAGCATCAATGTTTCCCCGCCCCACCGACGCCATCATCGGAATCGCATTTAAACCAAACCTAATTCGCACCTGTTGTATCTTCTGCGCTAATTCTGGTCGATAGACTAAAATTCTGGCGAGTAAAAGATGCGCAACTTGACAACTAATCTGGCGATCAAATGTCCAAATTCCATCAAACTGTCGCGCCTGATCGATGACTGGCGGTGTATCAGGTGTAAAATGTTCTTGACAAATTAGGCAAGCTGTGTAATCTTGACCAACAACAACTAAATGCCATTCATTAACTAGCTGATCTTGGCGATCAAAAGGAATTGTCTCATAAGGCTCGGCAGCAGCGGCAAAGTTAGATTCTGGGGTTGCCAAAACATAAACTTGATCTGTGCGCTGCGCAATTTGCTGATAGCGTCTTGTTTCGGCACGATAAAAGCGCTCGCGTTGAAAGTTGGCGATGACTAGCGGTTTATCTTTCCCGTTGAGTACTAAATCTTCGATCGCGTGCGATAGCGCCGTCAAGGAAGACTTAAAATATCTTTGGGTGTGTAAATCAGGTCGGGCTTGAAGTAACTCCTGGAGTGGAGAATGCGAAATTCTCATCACCAATTGTGCGGTAAAACCATTACTTGAATAACCCCAGCGCAGACGGCAAGGGCTAAGTTAAATTATCTCTCCAGATCCTTCATGAACCTGCAAGATTGAACAAAGAATTTTATCGAATAAAGTCGCGTTAACAAGTTGACTTGTGTGGATTTCTAACTCGGCTTCTGGCGGTGCTGTAAATAAAAGCGTTTGTCCAGGAAAAACCGTTCGTTCAAAGTACCAGTTAGGGATGTTAGAAATACGGGTAATCTGCAACAGGCTAGTACGATTGACGTAGCAACACAAGATTTGGCGATCGCATTGAGTCGTTGAGGCAATTTGAGTCATAGTATCAATCCTTACTTAGTTGTCCTGCTAATTTGCAAGTAAGTCTCCACTTAAGTTTGCCTCATTTAAAATGGTTTGGCTCAAATCTGCGCCACTAATATCGACTAATCTTATTTCTGCGTATCGCAGATCCGCACCCTTTAACTTTGCTTTGGTTAACTTTGTACGTACTAATTGTGCTAGCCGCAAATCTGCTTTAACTAGCACTGCTTCGCTCAAATCTACTTCACTGAGGTTTGCTTTAATTAAAATTGACCGACTCAAGTTTGCTTTGTGTAAAGTTGCTTGAGTTAAATTAGCCCTCCACAAAATTGCACTTGTCAAGTTTGCAGAACTCAGATGCGCTTGTCTTAAGTTTGCAGCAGTCAGGTTAGTGCGTGCTAAGTCTGCACCCCAAAGAATGGCACCTTGCAGATTAACTTCACTTAAATTAACGCCCCGCAAATTGACAAAACTAAAATCTCTCTCACCTGCTGCATACCGCCGATTTAGTTCATCAGCATTCATAGTAATCGTGTTTCACGCCGTTTGATGTCGTGCGCTTGAGTATTTGCTGACAAGATTGAGATTTTAATTTAAGACAAATTGGTAAAAAATCCAATTAAACCCTGTCCCGTCACAACTTCTAGCACGAGTAAAGAGACAAAACCAATCATCGCTAAGCGACCATTCAGCAGTTCAGCGTGAGGTGTGAACCCAGTTTGACTTTCTTGGACGTACATTTTTGGTTCAATGGCAAATGTATTTGCTAAACCCCGCTCATCGACTACATATTGGCGTGCGCTCATAGGATTTTCCTCATGTTTGTTTAACTATGTAAATAAATGTAACAGATAATCTTAAATTTTGTAAAGATTTTTATAAAAATTGTTACATAAAGTAGTTTTACAACTTTGGAAAAGGAATTTTTGATATTTCGCTTGATTCTCTAGTCAAGTAGAGAGTTTACAATGCAATTAAAGTAACTCTCAAACACAAAGCAGTATTTAACTGGTGAGATATACCGTGCGGTAGTCGGATAGTTGCTTTGGTGAACAAAGGGGGCAATATGCTCAAAAAATCAGTAATTTATGGGCTTGTGGGCGTACTTGCGGGTAGTGCAATTCCAGCTTTCATCATTAGTGGTAGAGCAAATAGCCAAGCAGTGCGATCTTCTCCTTGCCATATGACCATGCATAGCGCCATGGCTGGGAGACAACAACAGCACTTCATCGAAATGATGATTCCGCATCATCAAGAAGCAGTCGATATGGCAGAGTTAGCCTTGGCAAAAGCTCAACGTCCTGAAATTAGAAATTTGGCTGAAACGATTAAAACCGAGCAAACACGGGAAATTGAGCAAATGCGATCGTGGTACAAACAGTGGTATGGCACTGAGGTACCTGCAAACTCGATGAGTGATATGGGAATGCATCGCAGTCGAGGACAAGGAATGCAGGGAATGATGATGCGAACGGATATGGAATCTTTGAGAACCGCATCTGACTTCGATCGAGAATTCATTCGTCAGATGATTCCACATCATCGCTCAGGAGTCATGATGGCACGAATGGTTGCTAACCGAGCAGAACGTCCAGAAATTCGTAACTTGGCACAATCAATTATTCAGTCGCAATCGACCGAAATTGCTCAAATGCAGCAATGGTATCAAGCCTGGTATCAGTAGATTTTTCATTCATCCAAAAACTATGACACTTACACTTAAAGTTCCTAAAATGGCGTGTTCAGCTTGCGTAAACACAATTACTCAAGCAATTCGCTCAGTAGATACCAACGCAACAGTTCAAGCTGAACCAAAGACAAAACTCGTCAACATTGAGACTCAAGCATCAGCAACCGCAATTAAAGAAGCTTTAGCATCTGTCGGATATCCCGCTGCTTAATCACAAGGATTCTCTCATGGAGACACTTACACTAAAACTTCGAGGCATGAGTTGTGCCTCTTGTGCAAATAGTATTGAAGAAGCGATTCGCTCAGTTCCTGGGGTGACTGAATGCAACGTCAACTTTGGTGCAGAACAAGCCGCAGTTCAATATAACCCTGACAAAACCAGTATTGAAAAAATTCAAGCCGCGATTGACGAAGCAGGATACTCGTCTTACTCACTTCAAGAACAAGAAATGATAACTGGAGAAGACGACGCGGAGAAAGCCGCACGTCTCGCCGAATCAAAAAAGCTGAAGCGTAAACTTTGGGTAGGAGGCGTCATTAGCATTATCCTCGTCATTGGCGGATTACCAATGATGACAGGGCTACATATACCTTTGATTCCTGCGTGGCTACACAATCCTTGGTTTCAACTCGTGCTGACGACTCCGATTCAATTTTGGAGTGGTGAATCGTTTTATCAAGGTGCTTGGAAAGCATTTAAACGCCATACAGCTACGATGGATACGCTAGTTGCACTGGGGACAAGTGCGGCGTATTTCTACTCGCTGTTTCCAACATTTTTTCCAGACTTTTTTCGCGCGCAGGGGCTTGAACCAGCCGTTTACTACGAAATTTCTGCGGTTGTGATTACGCTGATTTTACTAGGGCGGTTGTTAGAAAATCGCGCCAAAGGACAAACTTCAGAAGCAATTCGCAAACTGATTGGCTTGCAAGCACGCGATGCGCGAGTGATTCGTAACGGACAAGAAATGGATATTCCAATTCAGGAAGTCCAAATTGATGATGTCATCGTAGTCCGTCCAGGGGAAAAAATTCCGGTAGATGGCGAAGTGATTGAAGGCGCTTCAACGGTAGATGAAGCGATGGTGACAGGTGAAAGTGTTCCTGTGAAGAAGCAGCCAGGCGATGAAGTGATTGGCGCGACGATTAACAAAACTGGGAGTTTTAAGTTTCGCGCTACACGCGTTGGTAAAGATACGTTTCTCGCGCAAATTGTGAAACTCGTTCAACAAGCGCAAGGTTCTAAAGCACCGATTCAGCAACTCGCCGATCGCGTTACCGGATGGTTTGTACCCGCAGTAATTGCGATCGCAATCGCAACATTTATCATTTGGTTTAACTTCTTAGGTAACTTGACACTCGCAACGATTACCACCATTGGTGTATTGATTATTGCCTGTCCTTGTGCTCTGGGACTTGCTACACCTACATCAATTATGGTGGGAACAGGTAAAGGTGCAGAAAATGGCATTCTAGTCAAGGGTGCAGAAAGTTTAGAACTCGCGCACAAAATTCAAACGATTGTTTTAGATAAAACAGGAACGATTACCGAAGGTAAACCGACAGTGACAGATTTTGTGACTGTCAACGGTACAGCCAATCGTAACGAATTAAAACTGATCGAGCTTGCTGCGTCAGTTGAACGGAACTCGGAACATCCGCTAGCAGAAGCAGTTGTAAGGTACGCCCAAACGCAAGAAGTTGCGCTTAGAGATGTGCAAAACTTTGAGGCGATCGCGGGTAGTGGCGTGCAAGGAATCGTGGGCGATCGCTTGGTACAAATCGGTACGCAGCGCTGGATGGAAGAATTAGGCATTGATACCCGCGCCCTTGTAGAACGCAAAACAACGTTAGAACATACAGGGAAAACGGCGGTTTGGCTCGCAGTTGATGGCAAAATGCAAGGACTCATGGGCATTGCAGATGCGCTTAAACCTTCTTCCGCACACGCTGTGAGCGCATTAAAACGCTTAGGTTTAGAAGTCGTTATGCTCACGGGCGATAACCGAGCCACCGCAGATGCGATCGCGCAACAAGTCGGAATTGATCGTGTCTTTGCTGAAGTGCGCCCTGATCAAAAAGCGGCAATTGTCAAGTCACTGCAAACAGAACGCGGTAGACATTCAAAATCTAAGACGGTTGCCATGGTAGGAGATGGTATCAACGATGCACCTGCATTAGCGCAAGCTGATGTCGGAATTGCAATTGGTACAGGAACTGATGTGGCGATCGCAGCGAGCGATATTACTTTAATCTCTGGCGAACTCCAAGGAATCATAACCGCAATTCAACTTAGTCGAGCCACGATCCGCAACATTCGTCAAAATCTCTTCTTCGCCTTTATCTATAACGTTGCAGGTATTCCCATTGCGGCGGGAATTCTTTTTCCGATCTTTGGCTGGCTACTCAATCCAATTATCGCTGGAGCAGCAATGGCGTTTAGTTCTGTATCTGTTGTTACTAATGCTTTGCGTTTACGTAACTTTCAGCCTGAAGTTTAA

Protein sequences of DBSCAN-SWA_1

>NC_019745|858977:869012|861736_862399_-|WP_015187246.1|DBSCAN-SWA
MLLKKRFALNIVAIAATGGFIASCAAVPPTPTPRANTQSTQQMPHHGMNHAMAMDLGPADANYDWRFIDAMVPHHQGAVEMAQAALEKSQRAEIKELATEIIAVQQREIAQLQQWRQAWYPQASNTPVAYNPQTGETVPMSQQQMHSMMMHGDLGAADAEFDRRFIDAMIPHHEGAVIMAQDALNKSQRPEIRKLAQEIINSQEAEIKQMQAWRQAWYQQ
>NC_019745|858977:869012|858977_860486_-|WP_081588096.1|DBSCAN-SWA
MLLRTRLLAPLYTSVLVLAILVCARAGIGFWLEFRRQDTLSWVRHTLQVQSQAELLLNAALDQETGIRGYLLTGAESSLEPYKSGQIDFNNTLALLDDLVADNPEQQHRVNEIITLYNRWQREFAQPVVLGAAPESNTTLAGKLLFDPLRSQVMAMLQREEDLLARRNQQLYRLDQSFRVFNILAPVLLLLGIGINLWLLHRRVEVPLHQLASVAQTWETGRMQPRLNFQAADEIGQLARILDRMASEIDSRQTRSDERNRQLDDLIASLSHDLRTPLLAIRGTLRSMLHGAFGSVSDTWREILEEYYQTNEDLLKLVEALLEVSRYEAGSKNLIYEPLDWNKIFTKTINQERIASKSKLHFELQLTQPLPIVYGDELEIGRVIQNLLSNAVRVSKLNSQVQLAVVAENSGVVRVSVSDRGPGIAPQEQEYLFHRFIQGRGRRGGAGLGLYLCRQIVEAHQGTIGVDSIVGQGSTFWFTLPIVPQVIREESCLIANRQSESY
>NC_019745|858977:869012|862571_864509_-|WP_015187247.1|DBSCAN-SWA
MRISHSPLQELLQARPDLHTQRYFKSSLTALSHAIEDLVLNGKDKPLVIANFQRERFYRAETRRYQQIAQRTDQVYVLATPESNFAAAAEPYETIPFDRQDQLVNEWHLVVVGQDYTACLICQEHFTPDTPPVIDQARQFDGIWTFDRQISCQVAHLLLARILVYRPELAQKIQQVRIRFGLNAIPMMASVGRGNIDAVTFTERLVTHLQASQYRLLKAYRTIATQERQERLVNSITAAIRRSLNLHEILTTAVQELGQTFEHCRCLLYRCDRIYQDVTIEYEALAPGMTSLQGETWLLVENPLFQAAVATEKAIAVTDVTKLPSLQANPALTTLLSRSGIRSWLLVPVIYQETLLGMLEIHHTGAEPYIWQEHDIALVEAIANQVGVALIQAQAYIRLEELNNQLAALERTRSNLIAIVGHELRTPLSTIQICLETLATEPEMTLEMQQVMLQTALTDAERLRKLTQDFITLSRLESGQIHWQLEPISLQECLNLALNSLKAWWSPQQLAQIEVILPPKLPLVLADGEGLVQVFTKLIDNALKFAPGGKVTVSARTLKNKLASKRISMIEVCVADMGRGIEPNQLEVIFTRFSQEEEYLRRISSGTGLGLAICRQIVQGLGGQIWAESAGKNQGSQFYFTVPVS
>NC_019745|858977:869012|866527_866722_+|WP_015187252.1|DBSCAN-SWA
MTLTLKVPKMACSACVNTITQAIRSVDTNATVQAEPKTKLVNIETQASATAIKEALASVGYPAA
>NC_019745|858977:869012|864569_864839_-|WP_015187248.1|DBSCAN-SWA
MTQIASTTQCDRQILCCYVNRTSLLQITRISNIPNWYFERTVFPGQTLLFTAPPEAELEIHTSQLVNATLFDKILCSILQVHEGSGEII
>NC_019745|858977:869012|860665_860833_-|WP_155823565.1|DBSCAN-SWA
MPVEVTLGDTFGDMVAVESGLFEGDLVVTQRSRASYRWFRVRTCDRASNCASTRR
>NC_019745|858977:869012|865887_866505_+|WP_015187251.1|DBSCAN-SWA
MLKKSVIYGLVGVLAGSAIPAFIISGRANSQAVRSSPCHMTMHSAMAGRQQQHFIEMMIPHHQEAVDMAELALAKAQRPEIRNLAETIKTEQTREIEQMRSWYKQWYGTEVPANSMSDMGMHRSRGQGMQGMMMRTDMESLRTASDFDREFIRQMIPHHRSGVMMARMVANRAERPEIRNLAQSIIQSQSTEIAQMQQWYQAWYQ
>NC_019745|858977:869012|866738_869012_+|WP_015187253.1|DBSCAN-SWA
METLTLKLRGMSCASCANSIEEAIRSVPGVTECNVNFGAEQAAVQYNPDKTSIEKIQAAIDEAGYSSYSLQEQEMITGEDDAEKAARLAESKKLKRKLWVGGVISIILVIGGLPMMTGLHIPLIPAWLHNPWFQLVLTTPIQFWSGESFYQGAWKAFKRHTATMDTLVALGTSAAYFYSLFPTFFPDFFRAQGLEPAVYYEISAVVITLILLGRLLENRAKGQTSEAIRKLIGLQARDARVIRNGQEMDIPIQEVQIDDVIVVRPGEKIPVDGEVIEGASTVDEAMVTGESVPVKKQPGDEVIGATINKTGSFKFRATRVGKDTFLAQIVKLVQQAQGSKAPIQQLADRVTGWFVPAVIAIAIATFIIWFNFLGNLTLATITTIGVLIIACPCALGLATPTSIMVGTGKGAENGILVKGAESLELAHKIQTIVLDKTGTITEGKPTVTDFVTVNGTANRNELKLIELAASVERNSEHPLAEAVVRYAQTQEVALRDVQNFEAIAGSGVQGIVGDRLVQIGTQRWMEELGIDTRALVERKTTLEHTGKTAVWLAVDGKMQGLMGIADALKPSSAHAVSALKRLGLEVVMLTGDNRATADAIAQQVGIDRVFAEVRPDQKAAIVKSLQTERGRHSKSKTVAMVGDGINDAPALAQADVGIAIGTGTDVAIAASDITLISGELQGIITAIQLSRATIRNIRQNLFFAFIYNVAGIPIAAGILFPIFGWLLNPIIAGAAMAFSSVSVVTNALRLRNFQPEV
>NC_019745|858977:869012|861064_861697_-|WP_015187245.1|DBSCAN-SWA
MTETKVRQQYDNIAATYDQRWSHYVGSTLSFLQAWADISPTATVLDVACGTGEFERLLLVDNPQQKIVGVDISEKMLAIAREKCQNYPQVSFYVAPASKLPFADQSFDAIVCASSFHYFDDPHAALLEMKRVLKPNGCVVILDWCKDYLLCRICDWVLPIFDPAYKQCYTQAEFHSLLTSAGYQISRATRVRFGVVWGLMIATASVELGE
>NC_019745|858977:869012|865414_865627_-|WP_015187250.1|DBSCAN-SWA
MSARQYVVDERGLANTFAIEPKMYVQESQTGFTPHAELLNGRLAMIGFVSLLVLEVVTGQGLIGFFTNLS
>NC_019745|858977:869012|864866_865346_-|WP_015187249.1|DBSCAN-SWA
MNADELNRRYAAGERDFSFVNLRGVNLSEVNLQGAILWGADLARTNLTAANLRQAHLSSANLTSAILWRANLTQATLHKANLSRSILIKANLSEVDLSEAVLVKADLRLAQLVRTKLTKAKLKGADLRYAEIRLVDISGADLSQTILNEANLSGDLLAN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081588096.1|858977_860486_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.5e-13	27.4
WP_155823565.1|860665_860833_-	hypothetical protein	NA	NA	NA	NA
WP_015187245.1|861064_861697_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	3.5e-09	35.1
WP_015187246.1|861736_862399_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	4.2e-05	39.7
WP_015187247.1|862571_864509_-	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	3.5e-15	28.7
WP_015187248.1|864569_864839_-	DUF1830 domain-containing protein	NA	NA	NA	NA
WP_015187249.1|864866_865346_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015187250.1|865414_865627_-	high light inducible protein	F5B3V7	Synechococcus_phage	3.2e-07	53.4
WP_015187251.1|865887_866505_+	DUF305 domain-containing protein	NA	NA	NA	NA
WP_015187252.1|866527_866722_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_015187253.1|866738_869012_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	8.5e-114	36.4