CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_019748	Stanieria cyanosphaera PCC 7437, complete sequence	9 crisprs	RT,Cas14u_CAS-V,cas14k,WYL,csx18,cas1,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas2,c2c9_V-U4,cas14j,csa3,Cas14c_CAS-V-F,DEDDh,cas5,cas7,cas8b3,cas3,cas6,DinG,cas4	2	2
NC_019750	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.03, complete sequence	0 crisprs	csa3	0	0
NC_019766	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.05, complete sequence	0 crisprs	Cas14c_CAS-V-F	0	0
NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	0 crisprs	NA	0	0
NC_020052	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.04, complete sequence	0 crisprs	NA	0	0
NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	2 crisprs	c2c9_V-U4,cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL,cas14j,Cas14c_CAS-V-F	43	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019748_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_1

534533-535100

TypeIII-B

Consensus_repeat	Method
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	PILER-CR
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CRISPRCasFinder
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CRT

7 spacers

cas2,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas1,csx18,WYL

The CRISPR arrays of NC_019748_1

>merge|NC_019748|1|534533-535100|PILER-CR,CRISPRCasFinder,CRT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCTTGGTGACAAAATAATTAACGTTTCTGCCCATTTCAGCCATTCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCGGAGTAAAACCCCAGCTTCCCATTGCCATTCAAGTTCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACAACGGTTAAGTTTCCAATTACGCCAGGATCGCTATAACCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACAAAGAGCCGAGAACGACATCAGGACGGGAGGGACTTACCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCAAGCAACACATTCTTGTGTTTTTTTCCAAGGGTATTCTTCGCCAACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCTAAAATTTTTCTGAGGTCTTTCGATAAGTCTGACGCCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCTTTTAAAATCTCTTGGGAAAGCGATCGCCTTCTTTGGATTCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

>NC_019748|1|1|534533-535100|PILER-CR
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTTGGTGACAAAATAATTAACGTTTCTGCCCATTTCAGCCATT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CGGAGTAAAACCCCAGCTTCCCATTGCCATTCAAGTT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AACGGTTAAGTTTCCAATTACGCCAGGATCGCTATAAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AAAGAGCCGAGAACGACATCAGGACGGGAGGGACTTAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CAAGCAACACATTCTTGTGTTTTTTTCCAAGGGTATTCTTCGCCAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTAAAATTTTTCTGAGGTCTTTCGATAAGTCTGACGC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTTTTAAAATCTCTTGGGAAAGCGATCGCCTTCTTTGGATT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

>NC_019748|1|1|534533-535100|CRISPRCasFinder
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTTGGTGACAAAATAATTAACGTTTCTGCCCATTTCAGCCATT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CGGAGTAAAACCCCAGCTTCCCATTGCCATTCAAGTT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AACGGTTAAGTTTCCAATTACGCCAGGATCGCTATAAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AAAGAGCCGAGAACGACATCAGGACGGGAGGGACTTAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CAAGCAACACATTCTTGTGTTTTTTTCCAAGGGTATTCTTCGCCAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTAAAATTTTTCTGAGGTCTTTCGATAAGTCTGACGC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTTTTAAAATCTCTTGGGAAAGCGATCGCCTTCTTTGGATT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

>NC_019748|1|1|534533-535100|CRT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTTGGTGACAAAATAATTAACGTTTCTGCCCATTTCAGCCATT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CGGAGTAAAACCCCAGCTTCCCATTGCCATTCAAGTT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AACGGTTAAGTTTCCAATTACGCCAGGATCGCTATAAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AAAGAGCCGAGAACGACATCAGGACGGGAGGGACTTAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CAAGCAACACATTCTTGTGTTTTTTTCCAAGGGTATTCTTCGCCAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTAAAATTTTTCTGAGGTCTTTCGATAAGTCTGACGC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTTTTAAAATCTCTTGGGAAAGCGATCGCCTTCTTTGGATT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015191739.1\|523606_524599_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019748.1\|WP_015191747.1\|538024_538990_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NC_019748.1\|WP_015191740.1\|524636_526124_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	unknown
NC_019748.1\|WP_015191741.1\|526132_528097_-\|DUF324-domain-containing-protein	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NC_019748.1\|WP_015191742.1\|528171_528603_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_019748.1\|WP_015191744.1\|529459_530632_-\|CRISPR-associated-protein,-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_019748.1\|WP_015191752.1\|544161_544608_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_041619691.1\|534061_534343_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019748.1\|WP_171815438.1\|544781_544925_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015191751.1\|543084_544068_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_019748.1\|WP_015191753.1\|544688_544778_+\|cytochrome-b6-f-complex-subunit-PetN	unknown	unknown	gnl\|CDD\|367633
NC_019748.1\|WP_015191736.1\|521228_521690_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015191749.1\|540387_541923_-\|Gldg-family-protein	unknown	unknown	gnl\|CDD\|225766
NC_019748.1\|WP_150109104.1\|539514_539655_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NC_019748.1\|WP_015191738.1\|523217_523499_+\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	gnl\|CDD\|236195
NC_019748.1\|WP_015191743.1\|528651_529449_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_019748.1\|WP_015191750.1\|542166_542958_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132557
NC_019748.1\|WP_015191746.1\|535145_536501_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019748.1\|WP_015191748.1\|538997_539561_-\|DUF4340-domain-containing-protein	unknown	unknown	gnl\|CDD\|379518
NC_019748.1\|WP_015191737.1\|521744_522998_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015191739.1\|523606_524599_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.35766e-112
NC_019748.1\|WP_015191751.1\|543084_544068_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.86186e-98
NC_019748.1\|WP_041619691.1\|534061_534343_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.57689e-30
NC_019748.1\|WP_015191741.1\|526132_528097_-\|DUF324-domain-containing-protein	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	8.08712e-12
NC_019748.1\|WP_015191744.1\|529459_530632_-\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.21276e-66
NC_019748.1\|WP_015191753.1\|544688_544778_+\|cytochrome-b6-f-complex-subunit-PetN	gnl\|CDD\|367633	pfam03742, PetN, PetN. PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.	1.81718e-08
NC_019748.1\|WP_015191749.1\|540387_541923_-\|Gldg-family-protein	gnl\|CDD\|225766	COG3225, GldG, ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion].	7.39521e-72
NC_019748.1\|WP_150109104.1\|539514_539655_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	0.00990659
NC_019748.1\|WP_015191747.1\|538024_538990_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	6.48608e-89
NC_019748.1\|WP_015191743.1\|528651_529449_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.94018e-37
NC_019748.1\|WP_015191750.1\|542166_542958_-\|ABC-transporter-permease-subunit	gnl\|CDD\|132557	TIGR03518, ABC_transporter_permease_protein, gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	3.33513e-29
NC_019748.1\|WP_015191746.1\|535145_536501_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.36784e-17
NC_019748.1\|WP_015191748.1\|538997_539561_-\|DUF4340-domain-containing-protein	gnl\|CDD\|379518	pfam14238, DUF4340, Domain of unknown function (DUF4340). This domain is found in bacteria, and is typically between 183 and 196 amino acids in length.	1.04411e-09
NC_019748.1\|WP_015191738.1\|523217_523499_+\|hypothetical-protein	gnl\|CDD\|236195	PRK08238, PRK08238, UbiA family prenyltransferase.	0.00810706
NC_019748.1\|WP_015191737.1\|521744_522998_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.64184e-08

>NC_019748.1|WP_041619691.1|534061_534343_+|CRISPR-associated-endonuclease-Cas2
MLLYVIVYDIPCDKRRKKVADLLEGYGTRVQYSVFECVLRKEQYHQLCSRLKKRIELQEDSIRIYPLTRHTLDKVETWGVGTPVTSPPGSIIV
>NC_019748.1|WP_015191744.1|529459_530632_-|CRISPR-associated-protein,-Cmr3
MLWYTLTPLDILLFRDAKPFTPGERAWAGSVFPPNGHAIAGAIRGLLNNDQKITLKGVFLCYQQKLYLPRPLNYVGKNLLHPLTWLDKDSPYRQMIWNRFSPAPLLKKAPDEEEEKENNIARKPRNYLPYSVITKLLDNKELKSEDWLCQEREKPQPWSVETRSHNCLDSGTRQVKDADGYFVENAIRLHSGWSLAIGIDKKIPNTPTSMRLGGEGHRVLVEECPELSEQWEKLQQQSQRNYEAGGKSLAYLITPGVFERIHKDQKAVCQPYPWEWKLAHTVNSNQKEGNLVSVATAQPLPISGRVRDEDKNNDELGIMNAESKNSSFSTHPSSLKSIPAPQVFAAPAGSVYYLNRPDILFQDTDEAPNKVKRWRSLGYSELLWISYLNN
>NC_019748.1|WP_015191743.1|528651_529449_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTINYTYLYLLSPLHTGGTTQEGNLLGIARESHTNFPYIPSSSIRGRLRASVEDKDQKFKLFGTDLENTSQLEQGNIWIGDGALLWLPVPSLSHGVVWVSCPMLLKRWARFTGKLDRIPVEYSCNFLNGNSAVYLKDAILKADELKQWQNWQDFIPQTSQSNTIERAIVLPDKHCATLIQMSLWRQVKIKLDENKTVDGGFRYEEAIPPDTLMYFTWGTTSAANGTASQIHQEFTQLLAKQEILQIGGQESLGRGFVQQWLASAN
>NC_019748.1|WP_015191742.1|528171_528603_-|hypothetical-protein
MQTFDPRTLSTPVYEALQELRNHNSNDNSRLKAQKSQAVELYTYLATWGMMRLKAEEQILNQNDKPTEKQDMTKKGREDVVKKYFECLQLLSSVKDLASNKGLDSLKQLKADDYLGLTGLGLNLAQEFSFWANAIYSDVKGDA
>NC_019748.1|WP_015191741.1|526132_528097_-|DUF324-domain-containing-protein
MSPQPLQRPQRPNKPVPKSQVSNKPQSFNDNGGGNNGGHGNRRNNNEGNNEPPSPWLNSDNEPQPNSTASFVEYLRWMREPEREYKDATKIQILQIAQENANYCDRLKQLNQRTELIAGKENTFIVKCPWRIRVGGHRGPESILLPAFDALGMPYIPASTLRGVARTQAIREIVATENIKWSAAEQQVAPYFGSIETNKAEDCAGKIVFLDAYPLPSKTGGLSMDMANNIWKWDENKQPQYGSNPNVFLSLQKSDFLIGLRLSSNCQDKEILNKVKHWLISGLQAGIGSQINTGYGRLVIGDKTKSSYEFFHVKFALEGQLIHGNQEFNNVKQPFQTNKDGSFKTDKNGKLKSATIAIPEVRPTAFKSMLRYWFRAFALGVFPAEQVVNWEGKIFGAINPKQQLGWVRINIINGKLIQPEPKKDNERRGKQQGILTLSHSIATPQDKTQAISSLLKNLTWMMFNLGGIGQGARRPCYSRQNREYAPWFRGSTFSVDADLKNPKSFWYEPETVREFQQLFQNKLKKFYEALGQITQIDINYRSPKTVGSVSRQQWQEAIDNNCRIVVCSGDEDFNKPYALARLHSPNLKYNNNYDGNLCGKVASGVKPSPVWIADLGDYQVVTVFGATQDPRKRYLDELRTHPSKENYAQIFPFQ
>NC_019748.1|WP_015191740.1|524636_526124_-|hypothetical-protein
MPPKSILVATIGTRDLAFRVSNGEWHNLGNDRSPDGDTISEQALVQKELKLEKCDFRLLTEYFVESWEDYKDCLQPIILGKLLADKHQNLGKIYLVATNQPDNIAAEFRSKDTLYAARIIKLWIEQHHPVSIEIIEQGINGENPADFEQMFRWWKNTWREIGRTLPEETKVILCLKGGIGQSAEASRVTALSRFGEDTYFYDFIQDTKLNRRGEPSQYTQPFQGTNYLWERKQKESLALLNRCDYAGVWRILLPYWRNSQDDKILKIRDLLDAAIGWNRADFQGFAQGIDTLEQSRLQSWWQKAYESAYLGVIRFKQGNTIEAFFHSFRAVEGLITEWVIEQYRPHITYIRQQSGIVSPALTRTVCQDSQFPELRNFQWIFEPRNEIYLYGTKLDNILTAKFPKINTNPDWQYFFRHTREWRNLIFHRLLKLEKEEVFQAWKTNTQREWEERVLSFLNFISQQHFSSLTEASLMSQIHKLLEQAIISYEPQNNRF
>NC_019748.1|WP_015191739.1|523606_524599_+|CRISPR-associated-endonuclease-Cas1
MKTLYISQQGCYLSLKKETLIVERQRQILTEVQIPLVEQILIFGKSQITTQAIRACIWQNIPIVYLSRMGYCYGRLLPLEKGYRQLTRYQQQLSHGERLAVAREIVISKLKNSRVLLQRQQRKRDLIRLSQAIASLDYLVTKAKNANNTEQLLGYEGAGAASYFSALGEVITNRDFVFVARCRRPPGNPVNALFSFGYQVLWNHLLALIELQGLDPYQACLHQGTERHAALASDLIEEFRAPIVDSLVLYLVNRRVMNVEEDFTYHQGGCYLNDSGRKKYLKAFVQRMEEKLQTDAEEKQPRWDLLTQQVKLFKQFVYQPTQLYRPYLIR
>NC_019748.1|WP_015191738.1|523217_523499_+|hypothetical-protein
MYLSTRAAIVRNFATAIVNGAITLILLLIAPLGLAAVISNTFLVTVASFFVSTLSDSMVSWLSASPRHNSFSPSSQDINITYQGKIKNTKNKE
>NC_019748.1|WP_015191737.1|521744_522998_-|WYL-domain-containing-protein
MSQKTKINRYLNPQALERLLLLIATLLKYPGIGCRDEELQLDGTYKDLKKPQVSAPHRNHHNALQLVQTALRNLAQEIGINLPENYPAIPTIRKDLELLRDYQILEQRMYRWGYYLGTGVMDKYQLKAAFNALESQAIYQGDPQLRQIYYTLKLRLRGFEFEGEQDFFYPVRQHLNRAINHTDPEEMMSKGEYRHTLFHQINLLEQAIIQGQAIEISRSVDLYGNNKIGLMSVFPLQLIYYDIAWYLLYENASDRYAPRQGRDRTLAIGRVNRFKNHLEILTPGGRGIAAQKQSLQNAHQLLNNGWGLNLGDGQQQQLELQGKLEFIEIKVRFFPPVSNFIEEGELRHPQQKIRKGKLDFTTGKPTYLDYLIKLPPRSLEEFSFWVNRYSDKAVVLSPPQLVAKHHQSALNLVRQYQ
>NC_019748.1|WP_015191736.1|521228_521690_+|hypothetical-protein
MSLLGLRFRHCASRLQVLDYHHPDLAFEKVSALVTTHLPNQWFDAIARGQDPDDPYTVWELLHLDAVINLENWQGKFTRVGVSLVAEENQAYRILKQARQPAFNRVRHCLKIYRYWVFCVEPKYFPSDGEWVDILYSEIDRPNRESGCQSIIL
>NC_019748.1|WP_015191746.1|535145_536501_-|transposase
MSFNLPVEIISILLPFAGLFSKKVWNYVQIMLIGAILATGKRTVTSILEVMGLSAESNFQNYHRVLNRAVWSNLQASKILLTTLVMTFIPCGIVVCGIDDTIERRKGKKIKAKGIYRDPVRSSHSHFVKVSGLRWLSMMLLVEIPWAKKVWGLPFFTTLAPSERYHQQLQHRHKKLTDWARQMIFQVRRWLWNRELVVVADSSFTCLELLSSVSQTTSTSMITRLRLDAALYEPAPSRPTGTMGRPRLKGTRLPNLEQILIDADTQWSKITLSNWYGEANRPVEMSTGVAVWYHTGLPVVPIRWVLVRDPLDKFRPQALLCTNQRYQSQQILEWFSRRWQIEVTFEEARRHLGMETQRQWSDLAIARTTPLILGLFSLVTLLAHRLQANFTWTTRQKSWYVKSLPTFSDALALVRRFLWASTFSISSKPTDIIKVPRSLFNRLRDLAIYAA
>NC_019748.1|WP_015191747.1|538024_538990_+|carbonic-anhydrase
MKKLISGLDKFRHTYVPTHQQLLAQLSHGQKPRVLFITCSDSRIDPNLITQTDVGELFVIRNAGNIIPPYGAANGGEGGTIEYAIHALGIEQIVVCGHSHCGAMKGLLKLNELQAEMPLVYDWLKHAESTRRLVKENYSNYQGEELMEIMVAENVLIQINNLKTYPVVQAKLHQGKLQIYGWIYHIETGEVLAYDPETHTYVSPQSQLPDYRNKSLFPNNKFQSTNAPPVACELLKSKKQSSQSNGDGWLNLQSIEQIREELEGLLANTPRSSTDAAQAMRSLEELFNEARQSGMSSNELRGFHYRFSEPIQVWARKIHSR
>NC_019748.1|WP_015191748.1|538997_539561_-|DUF4340-domain-containing-protein
MKLQRTTCLLIIFAAILGSWVYFYEIRGEQQKTISATNQQQIFNLTEAQINKIIIQKSNQTLEFERTGKNEQPWQMKQPQNVPANDATIAFLLDLITNGKSDRIFTVPQSDLSQYGLDNPIAHIMIESNNQTTQEIFLGQPSLNEELIYAYTPVSGTKTGLNVLLVSRNWQYAVDRELSEWQQNPTN
>NC_019748.1|WP_150109104.1|539514_539655_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MAAKIINKQVVLCSFIINFKHNKVFISKVLTHAEYSKEDWKQDDWY
>NC_019748.1|WP_015191749.1|540387_541923_-|Gldg-family-protein
MKKILDKLCLFFGLIFAVAGLVVGLITNQWSWLPLGFLIVGTILITVWFGLMIRSNRSFWHQRGMQVGTNALIATTAIFLIIGLINFIAIRNSFRFDLTENKIFTLSPQTQAIVQNLSQPLKVWIFDRNVDPEIESLLQNYRRYSQNFQFEVVDPEINIQLAKGKFNVQSPGEVYLEYGNKKQRIQTLDPRSGNVLTEVQLTNAIEKIKRDRALTIYFFQGHGEAPLKDIEGGLSQAVQSLENRGYQVQPLTLATSGKIPENTNVIAIAGANRKLFPAEVKIIQEYLNNGGNLLLMLPPETDPGLTPILDDWGIQLDSRLVIDASGAGNILGLGPAAPIINNYGEHPITKDFGQDIAIFPESRPLKIVPKEGITATPLVITNEQSWAESDLSNQQLQFDSATDIKGPLDLAFALSRKENAQSKESRLVIFGSSTFATNGWLQQQLNSDLLLNSINWLAGEDEQTLSISAKEPTNRRINLAPLQARIISLMALFIMPMIALGMAIFTWWRRR
>NC_019748.1|WP_015191750.1|542166_542958_-|ABC-transporter-permease-subunit
MIIANIIAIFQKELQSYFVSPLAYIVTAVFWFLSGLFFIELLLGQQGIIQQVAISEQMGMPTNIDVAYVFLNSLFAVMGSLSLFILPILSMNLYTEERKRGTIELLATSPVTNWVVALGKLLAVVAFFLVMILPLLLYEAIAFSAANPAVPPAVPLLAHFGLILLAAAILSLGMFISSLTDNSIIAAILTFTLVLFLWIIDLIANSIGGTFGNALKHISLLESYNNLVQGIFETSDLILLFSYIFLGIFLTAQSIELFRFTRN
>NC_019748.1|WP_015191751.1|543084_544068_-|ABC-transporter-ATP-binding-protein
MIEVEHLSKIYGSTTAIEDVHFSVSAGEIIGFLGPNGAGKTTTMRILAGYIPASSGTAKIAGYDVHQQSMEVRKRIGYLPENPPLYLDLTVESFLHFVAKIKGISAGERSQKVQNAIARCQLKDKSRTIIRKLSKGYRQRVGIAQAIVHEPPVIILDEPTVGLDPRQIIEVRHLIKSLAGEHTIILSTHILPEVSMTCDRVTIINRGKVVTSDTPINLMEQLQGNSGYEVEVEGNLDSILPLLSQITGVSQVKVIQSEIVKPNRNVLQIVCRANSEPGKEIAATIVNQGLGLYQMRYTRPSLEDVFLELTTEDLMVASDEENTTMNN
>NC_019748.1|WP_015191752.1|544161_544608_-|hypothetical-protein
MTLPSLQTERIESCKAGVLAAIAFSMSELGMQLFNTIVLLSQGEQLAIFTVSLEIEFLSRLAIAVISGFLFGVTYRYIIRGDNNSHLKDGSVLAFGIVRGLALWEGMGIISGQLWLVGLLFGESLFCFALTRFLLDFALERKFIKPFL
>NC_019748.1|WP_015191753.1|544688_544778_+|cytochrome-b6-f-complex-subunit-PetN
MDILTLGWVSLLACFTWSIAMVVWGRNGF
>NC_019748.1|WP_171815438.1|544781_544925_+|hypothetical-protein
METAYLVNTLFLIALALLIIVSGGILYLSAIKWQDRRRQKNDERLNR

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Crispr_ID: NC_019748_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_2

536594-537916

TypeIII-B

Consensus_repeat	Method
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	PILER-CR
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CRISPRCasFinder
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CRT

17 spacers

cas2,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas1,csx18,WYL

The CRISPR arrays of NC_019748_2

>merge|NC_019748|2|536594-537916|PILER-CR,CRISPRCasFinder,CRT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACAAAGAAACCCCTTGATAAAGGGGTGCCGTATTACCAAAATCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACATTGTCCCGACACGAGAATTAATGCCTGGGATGGTTTTGGAACCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTTTGGGTCTAATTGCTTGGCAATCTCGGCAATTCTCTCTCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACACCAAATTTCATGCTCCTGTTGTGTTATGGGGTTATTTTCCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCATCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTGAAATACCTGCCTAATCCCCCAAAGTGAACTGGGTCTAGAACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACGAAAATGATTACAACTTACAACTTTTAGAAAAAGAACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCATCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCCGAACCATTCCCAGACTGAGATAATATTCATCCAGTAGATCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACAATAGTCTTTATAAATTTGTTCCGAGTCAAAGTTTTTTTCTACCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCTGATAGTCTCCGTATCCAGGTATATCCTTACAAGCCACTTTCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACCGCCAAACACTTAAATATAGCTGAAGCAGCAATTATCAAACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACACTGTGTTTAAATCTGCAATGCGGAATAGTTTATCGACATCTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTAGCACTGTCGATAATCCGTAGTATGTGTACTGTAACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTGCCTTTTATTAGTAGTAGCCTCATACACTCTATTTACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTAGATATTTGCATTTTGCATTTTGCCTTTTGACTTATCTAACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAACTAGACAACTATTGGGATATACCGCTACTAAATCTCTTCTGACTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

>NC_019748|2|2|536594-537916|PILER-CR
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AAAGAAACCCCTTGATAAAGGGGTGCCGTATTACCAAAAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ATTGTCCCGACACGAGAATTAATGCCTGGGATGGTTTTGGAAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTGGGTCTAATTGCTTGGCAATCTCGGCAATTCTCTCT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ACCAAATTTCATGCTCCTGTTGTGTTATGGGGTTATTTTC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TGAAATACCTGCCTAATCCCCCAAAGTGAACTGGGTCTAGAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	GAAAATGATTACAACTTACAACTTTTAGAAAAAGAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CCGAACCATTCCCAGACTGAGATAATATTCATCCAGTAGAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AATAGTCTTTATAAATTTGTTCCGAGTCAAAGTTTTTTTCTAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTGATAGTCTCCGTATCCAGGTATATCCTTACAAGCCACTTT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CGCCAAACACTTAAATATAGCTGAAGCAGCAATTATCAAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ACTGTGTTTAAATCTGCAATGCGGAATAGTTTATCGACAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGCACTGTCGATAATCCGTAGTATGTGTACTGTAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TGCCTTTTATTAGTAGTAGCCTCATACACTCTATTTA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGATATTTGCATTTTGCATTTTGCCTTTTGACTTATCTAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGACAACTATTGGGATATACCGCTACTAAATCTCTTCTGA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

>NC_019748|2|2|536594-537916|CRISPRCasFinder
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AAAGAAACCCCTTGATAAAGGGGTGCCGTATTACCAAAAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ATTGTCCCGACACGAGAATTAATGCCTGGGATGGTTTTGGAAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTGGGTCTAATTGCTTGGCAATCTCGGCAATTCTCTCT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ACCAAATTTCATGCTCCTGTTGTGTTATGGGGTTATTTTC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TGAAATACCTGCCTAATCCCCCAAAGTGAACTGGGTCTAGAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	GAAAATGATTACAACTTACAACTTTTAGAAAAAGAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CCGAACCATTCCCAGACTGAGATAATATTCATCCAGTAGAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AATAGTCTTTATAAATTTGTTCCGAGTCAAAGTTTTTTTCTAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTGATAGTCTCCGTATCCAGGTATATCCTTACAAGCCACTTT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CGCCAAACACTTAAATATAGCTGAAGCAGCAATTATCAAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ACTGTGTTTAAATCTGCAATGCGGAATAGTTTATCGACAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGCACTGTCGATAATCCGTAGTATGTGTACTGTAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TGCCTTTTATTAGTAGTAGCCTCATACACTCTATTTA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGATATTTGCATTTTGCATTTTGCCTTTTGACTTATCTAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGACAACTATTGGGATATACCGCTACTAAATCTCTTCTGA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

>NC_019748|2|2|536594-537916|CRT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AAAGAAACCCCTTGATAAAGGGGTGCCGTATTACCAAAAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ATTGTCCCGACACGAGAATTAATGCCTGGGATGGTTTTGGAAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTGGGTCTAATTGCTTGGCAATCTCGGCAATTCTCTCT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ACCAAATTTCATGCTCCTGTTGTGTTATGGGGTTATTTTC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TGAAATACCTGCCTAATCCCCCAAAGTGAACTGGGTCTAGAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	GAAAATGATTACAACTTACAACTTTTAGAAAAAGAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TTTTTTGTTTAAATATTCTGAGATTAATTGTCGTCAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CCGAACCATTCCCAGACTGAGATAATATTCATCCAGTAGAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	AATAGTCTTTATAAATTTGTTCCGAGTCAAAGTTTTTTTCTAC
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CTGATAGTCTCCGTATCCAGGTATATCCTTACAAGCCACTTT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	CGCCAAACACTTAAATATAGCTGAAGCAGCAATTATCAAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	ACTGTGTTTAAATCTGCAATGCGGAATAGTTTATCGACAT
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGCACTGTCGATAATCCGTAGTATGTGTACTGTAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TGCCTTTTATTAGTAGTAGCCTCATACACTCTATTTA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGATATTTGCATTTTGCATTTTGCCTTTTGACTTATCTAA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC	TAGACAACTATTGGGATATACCGCTACTAAATCTCTTCTGA
CTCTATCTTTTGTAGAGAAACTAATTGAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015191739.1\|523606_524599_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019748.1\|WP_015191751.1\|543084_544068_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_019748.1\|WP_041619691.1\|534061_534343_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019748.1\|WP_015191741.1\|526132_528097_-\|DUF324-domain-containing-protein	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NC_019748.1\|WP_015191742.1\|528171_528603_-\|hypothetical-protein	cmr5gr11	cls000022_cmr5gr11_CAS-III-B	unknown
NC_019748.1\|WP_015191744.1\|529459_530632_-\|CRISPR-associated-protein,-Cmr3	cmr3gr5	cd09748_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_019748.1\|WP_015191752.1\|544161_544608_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_171815438.1\|544781_544925_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015191753.1\|544688_544778_+\|cytochrome-b6-f-complex-subunit-PetN	unknown	unknown	gnl\|CDD\|367633
NC_019748.1\|WP_015191754.1\|545160_545391_-\|DUF3134-family-protein	unknown	unknown	gnl\|CDD\|371474
NC_019748.1\|WP_015191749.1\|540387_541923_-\|Gldg-family-protein	unknown	unknown	gnl\|CDD\|225766
NC_019748.1\|WP_015191746.1\|535145_536501_-\|transposase	unknown	unknown	gnl\|CDD\|379252
NC_019748.1\|WP_150109104.1\|539514_539655_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NC_019748.1\|WP_015191747.1\|538024_538990_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NC_019748.1\|WP_015191743.1\|528651_529449_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_019748.1\|WP_015191750.1\|542166_542958_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132557
NC_019748.1\|WP_015191740.1\|524636_526124_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	unknown
NC_019748.1\|WP_015191748.1\|538997_539561_-\|DUF4340-domain-containing-protein	unknown	unknown	gnl\|CDD\|379518
NC_019748.1\|WP_015191738.1\|523217_523499_+\|hypothetical-protein	csx18	cls000006_csx18_CAS-I:CAS-III	gnl\|CDD\|236195
NC_019748.1\|WP_015191737.1\|521744_522998_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015191739.1\|523606_524599_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.35766e-112
NC_019748.1\|WP_015191751.1\|543084_544068_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.86186e-98
NC_019748.1\|WP_041619691.1\|534061_534343_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.57689e-30
NC_019748.1\|WP_015191741.1\|526132_528097_-\|DUF324-domain-containing-protein	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	8.08712e-12
NC_019748.1\|WP_015191744.1\|529459_530632_-\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.21276e-66
NC_019748.1\|WP_015191753.1\|544688_544778_+\|cytochrome-b6-f-complex-subunit-PetN	gnl\|CDD\|367633	pfam03742, PetN, PetN. PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.	1.81718e-08
NC_019748.1\|WP_015191749.1\|540387_541923_-\|Gldg-family-protein	gnl\|CDD\|225766	COG3225, GldG, ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion].	7.39521e-72
NC_019748.1\|WP_015191746.1\|535145_536501_-\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.36784e-17
NC_019748.1\|WP_150109104.1\|539514_539655_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	0.00990659
NC_019748.1\|WP_015191747.1\|538024_538990_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	6.48608e-89
NC_019748.1\|WP_015191743.1\|528651_529449_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.94018e-37
NC_019748.1\|WP_015191750.1\|542166_542958_-\|ABC-transporter-permease-subunit	gnl\|CDD\|132557	TIGR03518, ABC_transporter_permease_protein, gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	3.33513e-29
NC_019748.1\|WP_015191738.1\|523217_523499_+\|hypothetical-protein	gnl\|CDD\|236195	PRK08238, PRK08238, UbiA family prenyltransferase.	0.00810706
NC_019748.1\|WP_015191748.1\|538997_539561_-\|DUF4340-domain-containing-protein	gnl\|CDD\|379518	pfam14238, DUF4340, Domain of unknown function (DUF4340). This domain is found in bacteria, and is typically between 183 and 196 amino acids in length.	1.04411e-09
NC_019748.1\|WP_015191754.1\|545160_545391_-\|DUF3134-family-protein	gnl\|CDD\|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	1.47693e-05
NC_019748.1\|WP_015191737.1\|521744_522998_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.64184e-08

>NC_019748.1|WP_015191746.1|535145_536501_-|transposase
MSFNLPVEIISILLPFAGLFSKKVWNYVQIMLIGAILATGKRTVTSILEVMGLSAESNFQNYHRVLNRAVWSNLQASKILLTTLVMTFIPCGIVVCGIDDTIERRKGKKIKAKGIYRDPVRSSHSHFVKVSGLRWLSMMLLVEIPWAKKVWGLPFFTTLAPSERYHQQLQHRHKKLTDWARQMIFQVRRWLWNRELVVVADSSFTCLELLSSVSQTTSTSMITRLRLDAALYEPAPSRPTGTMGRPRLKGTRLPNLEQILIDADTQWSKITLSNWYGEANRPVEMSTGVAVWYHTGLPVVPIRWVLVRDPLDKFRPQALLCTNQRYQSQQILEWFSRRWQIEVTFEEARRHLGMETQRQWSDLAIARTTPLILGLFSLVTLLAHRLQANFTWTTRQKSWYVKSLPTFSDALALVRRFLWASTFSISSKPTDIIKVPRSLFNRLRDLAIYAA
>NC_019748.1|WP_041619691.1|534061_534343_+|CRISPR-associated-endonuclease-Cas2
MLLYVIVYDIPCDKRRKKVADLLEGYGTRVQYSVFECVLRKEQYHQLCSRLKKRIELQEDSIRIYPLTRHTLDKVETWGVGTPVTSPPGSIIV
>NC_019748.1|WP_015191744.1|529459_530632_-|CRISPR-associated-protein,-Cmr3
MLWYTLTPLDILLFRDAKPFTPGERAWAGSVFPPNGHAIAGAIRGLLNNDQKITLKGVFLCYQQKLYLPRPLNYVGKNLLHPLTWLDKDSPYRQMIWNRFSPAPLLKKAPDEEEEKENNIARKPRNYLPYSVITKLLDNKELKSEDWLCQEREKPQPWSVETRSHNCLDSGTRQVKDADGYFVENAIRLHSGWSLAIGIDKKIPNTPTSMRLGGEGHRVLVEECPELSEQWEKLQQQSQRNYEAGGKSLAYLITPGVFERIHKDQKAVCQPYPWEWKLAHTVNSNQKEGNLVSVATAQPLPISGRVRDEDKNNDELGIMNAESKNSSFSTHPSSLKSIPAPQVFAAPAGSVYYLNRPDILFQDTDEAPNKVKRWRSLGYSELLWISYLNN
>NC_019748.1|WP_015191743.1|528651_529449_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTINYTYLYLLSPLHTGGTTQEGNLLGIARESHTNFPYIPSSSIRGRLRASVEDKDQKFKLFGTDLENTSQLEQGNIWIGDGALLWLPVPSLSHGVVWVSCPMLLKRWARFTGKLDRIPVEYSCNFLNGNSAVYLKDAILKADELKQWQNWQDFIPQTSQSNTIERAIVLPDKHCATLIQMSLWRQVKIKLDENKTVDGGFRYEEAIPPDTLMYFTWGTTSAANGTASQIHQEFTQLLAKQEILQIGGQESLGRGFVQQWLASAN
>NC_019748.1|WP_015191742.1|528171_528603_-|hypothetical-protein
MQTFDPRTLSTPVYEALQELRNHNSNDNSRLKAQKSQAVELYTYLATWGMMRLKAEEQILNQNDKPTEKQDMTKKGREDVVKKYFECLQLLSSVKDLASNKGLDSLKQLKADDYLGLTGLGLNLAQEFSFWANAIYSDVKGDA
>NC_019748.1|WP_015191741.1|526132_528097_-|DUF324-domain-containing-protein
MSPQPLQRPQRPNKPVPKSQVSNKPQSFNDNGGGNNGGHGNRRNNNEGNNEPPSPWLNSDNEPQPNSTASFVEYLRWMREPEREYKDATKIQILQIAQENANYCDRLKQLNQRTELIAGKENTFIVKCPWRIRVGGHRGPESILLPAFDALGMPYIPASTLRGVARTQAIREIVATENIKWSAAEQQVAPYFGSIETNKAEDCAGKIVFLDAYPLPSKTGGLSMDMANNIWKWDENKQPQYGSNPNVFLSLQKSDFLIGLRLSSNCQDKEILNKVKHWLISGLQAGIGSQINTGYGRLVIGDKTKSSYEFFHVKFALEGQLIHGNQEFNNVKQPFQTNKDGSFKTDKNGKLKSATIAIPEVRPTAFKSMLRYWFRAFALGVFPAEQVVNWEGKIFGAINPKQQLGWVRINIINGKLIQPEPKKDNERRGKQQGILTLSHSIATPQDKTQAISSLLKNLTWMMFNLGGIGQGARRPCYSRQNREYAPWFRGSTFSVDADLKNPKSFWYEPETVREFQQLFQNKLKKFYEALGQITQIDINYRSPKTVGSVSRQQWQEAIDNNCRIVVCSGDEDFNKPYALARLHSPNLKYNNNYDGNLCGKVASGVKPSPVWIADLGDYQVVTVFGATQDPRKRYLDELRTHPSKENYAQIFPFQ
>NC_019748.1|WP_015191740.1|524636_526124_-|hypothetical-protein
MPPKSILVATIGTRDLAFRVSNGEWHNLGNDRSPDGDTISEQALVQKELKLEKCDFRLLTEYFVESWEDYKDCLQPIILGKLLADKHQNLGKIYLVATNQPDNIAAEFRSKDTLYAARIIKLWIEQHHPVSIEIIEQGINGENPADFEQMFRWWKNTWREIGRTLPEETKVILCLKGGIGQSAEASRVTALSRFGEDTYFYDFIQDTKLNRRGEPSQYTQPFQGTNYLWERKQKESLALLNRCDYAGVWRILLPYWRNSQDDKILKIRDLLDAAIGWNRADFQGFAQGIDTLEQSRLQSWWQKAYESAYLGVIRFKQGNTIEAFFHSFRAVEGLITEWVIEQYRPHITYIRQQSGIVSPALTRTVCQDSQFPELRNFQWIFEPRNEIYLYGTKLDNILTAKFPKINTNPDWQYFFRHTREWRNLIFHRLLKLEKEEVFQAWKTNTQREWEERVLSFLNFISQQHFSSLTEASLMSQIHKLLEQAIISYEPQNNRF
>NC_019748.1|WP_015191739.1|523606_524599_+|CRISPR-associated-endonuclease-Cas1
MKTLYISQQGCYLSLKKETLIVERQRQILTEVQIPLVEQILIFGKSQITTQAIRACIWQNIPIVYLSRMGYCYGRLLPLEKGYRQLTRYQQQLSHGERLAVAREIVISKLKNSRVLLQRQQRKRDLIRLSQAIASLDYLVTKAKNANNTEQLLGYEGAGAASYFSALGEVITNRDFVFVARCRRPPGNPVNALFSFGYQVLWNHLLALIELQGLDPYQACLHQGTERHAALASDLIEEFRAPIVDSLVLYLVNRRVMNVEEDFTYHQGGCYLNDSGRKKYLKAFVQRMEEKLQTDAEEKQPRWDLLTQQVKLFKQFVYQPTQLYRPYLIR
>NC_019748.1|WP_015191738.1|523217_523499_+|hypothetical-protein
MYLSTRAAIVRNFATAIVNGAITLILLLIAPLGLAAVISNTFLVTVASFFVSTLSDSMVSWLSASPRHNSFSPSSQDINITYQGKIKNTKNKE
>NC_019748.1|WP_015191737.1|521744_522998_-|WYL-domain-containing-protein
MSQKTKINRYLNPQALERLLLLIATLLKYPGIGCRDEELQLDGTYKDLKKPQVSAPHRNHHNALQLVQTALRNLAQEIGINLPENYPAIPTIRKDLELLRDYQILEQRMYRWGYYLGTGVMDKYQLKAAFNALESQAIYQGDPQLRQIYYTLKLRLRGFEFEGEQDFFYPVRQHLNRAINHTDPEEMMSKGEYRHTLFHQINLLEQAIIQGQAIEISRSVDLYGNNKIGLMSVFPLQLIYYDIAWYLLYENASDRYAPRQGRDRTLAIGRVNRFKNHLEILTPGGRGIAAQKQSLQNAHQLLNNGWGLNLGDGQQQQLELQGKLEFIEIKVRFFPPVSNFIEEGELRHPQQKIRKGKLDFTTGKPTYLDYLIKLPPRSLEEFSFWVNRYSDKAVVLSPPQLVAKHHQSALNLVRQYQ
>NC_019748.1|WP_015191747.1|538024_538990_+|carbonic-anhydrase
MKKLISGLDKFRHTYVPTHQQLLAQLSHGQKPRVLFITCSDSRIDPNLITQTDVGELFVIRNAGNIIPPYGAANGGEGGTIEYAIHALGIEQIVVCGHSHCGAMKGLLKLNELQAEMPLVYDWLKHAESTRRLVKENYSNYQGEELMEIMVAENVLIQINNLKTYPVVQAKLHQGKLQIYGWIYHIETGEVLAYDPETHTYVSPQSQLPDYRNKSLFPNNKFQSTNAPPVACELLKSKKQSSQSNGDGWLNLQSIEQIREELEGLLANTPRSSTDAAQAMRSLEELFNEARQSGMSSNELRGFHYRFSEPIQVWARKIHSR
>NC_019748.1|WP_015191748.1|538997_539561_-|DUF4340-domain-containing-protein
MKLQRTTCLLIIFAAILGSWVYFYEIRGEQQKTISATNQQQIFNLTEAQINKIIIQKSNQTLEFERTGKNEQPWQMKQPQNVPANDATIAFLLDLITNGKSDRIFTVPQSDLSQYGLDNPIAHIMIESNNQTTQEIFLGQPSLNEELIYAYTPVSGTKTGLNVLLVSRNWQYAVDRELSEWQQNPTN
>NC_019748.1|WP_150109104.1|539514_539655_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MAAKIINKQVVLCSFIINFKHNKVFISKVLTHAEYSKEDWKQDDWY
>NC_019748.1|WP_015191749.1|540387_541923_-|Gldg-family-protein
MKKILDKLCLFFGLIFAVAGLVVGLITNQWSWLPLGFLIVGTILITVWFGLMIRSNRSFWHQRGMQVGTNALIATTAIFLIIGLINFIAIRNSFRFDLTENKIFTLSPQTQAIVQNLSQPLKVWIFDRNVDPEIESLLQNYRRYSQNFQFEVVDPEINIQLAKGKFNVQSPGEVYLEYGNKKQRIQTLDPRSGNVLTEVQLTNAIEKIKRDRALTIYFFQGHGEAPLKDIEGGLSQAVQSLENRGYQVQPLTLATSGKIPENTNVIAIAGANRKLFPAEVKIIQEYLNNGGNLLLMLPPETDPGLTPILDDWGIQLDSRLVIDASGAGNILGLGPAAPIINNYGEHPITKDFGQDIAIFPESRPLKIVPKEGITATPLVITNEQSWAESDLSNQQLQFDSATDIKGPLDLAFALSRKENAQSKESRLVIFGSSTFATNGWLQQQLNSDLLLNSINWLAGEDEQTLSISAKEPTNRRINLAPLQARIISLMALFIMPMIALGMAIFTWWRRR
>NC_019748.1|WP_015191750.1|542166_542958_-|ABC-transporter-permease-subunit
MIIANIIAIFQKELQSYFVSPLAYIVTAVFWFLSGLFFIELLLGQQGIIQQVAISEQMGMPTNIDVAYVFLNSLFAVMGSLSLFILPILSMNLYTEERKRGTIELLATSPVTNWVVALGKLLAVVAFFLVMILPLLLYEAIAFSAANPAVPPAVPLLAHFGLILLAAAILSLGMFISSLTDNSIIAAILTFTLVLFLWIIDLIANSIGGTFGNALKHISLLESYNNLVQGIFETSDLILLFSYIFLGIFLTAQSIELFRFTRN
>NC_019748.1|WP_015191751.1|543084_544068_-|ABC-transporter-ATP-binding-protein
MIEVEHLSKIYGSTTAIEDVHFSVSAGEIIGFLGPNGAGKTTTMRILAGYIPASSGTAKIAGYDVHQQSMEVRKRIGYLPENPPLYLDLTVESFLHFVAKIKGISAGERSQKVQNAIARCQLKDKSRTIIRKLSKGYRQRVGIAQAIVHEPPVIILDEPTVGLDPRQIIEVRHLIKSLAGEHTIILSTHILPEVSMTCDRVTIINRGKVVTSDTPINLMEQLQGNSGYEVEVEGNLDSILPLLSQITGVSQVKVIQSEIVKPNRNVLQIVCRANSEPGKEIAATIVNQGLGLYQMRYTRPSLEDVFLELTTEDLMVASDEENTTMNN
>NC_019748.1|WP_015191752.1|544161_544608_-|hypothetical-protein
MTLPSLQTERIESCKAGVLAAIAFSMSELGMQLFNTIVLLSQGEQLAIFTVSLEIEFLSRLAIAVISGFLFGVTYRYIIRGDNNSHLKDGSVLAFGIVRGLALWEGMGIISGQLWLVGLLFGESLFCFALTRFLLDFALERKFIKPFL
>NC_019748.1|WP_015191753.1|544688_544778_+|cytochrome-b6-f-complex-subunit-PetN
MDILTLGWVSLLACFTWSIAMVVWGRNGF
>NC_019748.1|WP_171815438.1|544781_544925_+|hypothetical-protein
METAYLVNTLFLIALALLIIVSGGILYLSAIKWQDRRRQKNDERLNR
>NC_019748.1|WP_015191754.1|545160_545391_-|DUF3134-family-protein
MNKQYTYPALQEEPIGEPASIIAPREDESIFRWIQSTGRFKPYQSDKYHDDKATDEFEDLLSQEEELDLELDEESL

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Crispr_ID: NC_019748_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_3

1074051-1074159

Orphan

Consensus_repeat	Method
GATTGAACTTGTTCTGCTATTTCTACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019748_3

>merge|NC_019748|3|1074051-1074159|CRISPRCasFinder
GATTGAACTTGTTCTGCTATTTCTACCAAACGCAAGATAGTCTTTGTGCCACGATAATTAGCTTGTTGAATTGTTTCAATGGATTGAACTTGTTCTGCTACTTCTACCA

>NC_019748|3|3|1074051-1074159|CRISPRCasFinder
GATTGAACTTGTTCTGCTATTTCTACCA	AACGCAAGATAGTCTTTGTGCCACGATAATTAGCTTGTTGAATTGTTTCAATG
GATTGAACTTGTTCTGCTACTTCTACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015192211.1\|1065575_1066451_+\|phycobilisome-linker-polypeptide	unknown	unknown	gnl\|CDD\|366093
NC_019748.1\|WP_015192224.1\|1077172_1078339_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NC_019748.1\|WP_015192226.1\|1079687_1080440_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NC_019748.1\|WP_015192216.1\|1068903_1069530_+\|DUF1001-domain-containing-protein	unknown	unknown	gnl\|CDD\|368789
NC_019748.1\|WP_015192229.1\|1081966_1082425_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015192223.1\|1075653_1076982_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NC_019748.1\|WP_150109034.1\|1063070_1064366_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270453
NC_019748.1\|WP_015192230.1\|1082492_1082747_+\|SemiSWEET-transporter	unknown	unknown	gnl\|CDD\|226580
NC_019748.1\|WP_015192218.1\|1069989_1070823_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NC_019748.1\|WP_041619156.1\|1068282_1068819_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|312763
NC_019748.1\|WP_041619762.1\|1080558_1081260_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NC_019748.1\|WP_150109035.1\|1069585_1069894_+\|CpeR-family-transcriptional-regulator	unknown	unknown	unknown
NC_019748.1\|WP_015192219.1\|1070880_1072389_-\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|273653
NC_019748.1\|WP_015192221.1\|1074213_1074786_-\|DUF924-domain-containing-protein	unknown	unknown	gnl\|CDD\|377592
NC_019748.1\|WP_015192228.1\|1081305_1081695_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015192225.1\|1078406_1079576_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NC_019748.1\|WP_015192213.1\|1066952_1067714_+\|phycobilisome-rod-core-linker-polypeptide	unknown	unknown	gnl\|CDD\|366093
NC_019748.1\|WP_015192214.1\|1067810_1068083_+\|CpcD-phycobilisome-linker-domain-protein	unknown	unknown	gnl\|CDD\|215022
NC_019748.1\|WP_015192210.1\|1064428_1064983_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|381208
NC_019748.1\|WP_015192222.1\|1074847_1075444_+\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015192211.1\|1065575_1066451_+\|phycobilisome-linker-polypeptide	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	4.92175e-74
NC_019748.1\|WP_015192224.1\|1077172_1078339_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	5.47677e-107
NC_019748.1\|WP_015192226.1\|1079687_1080440_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	6.92749e-153
NC_019748.1\|WP_015192216.1\|1068903_1069530_+\|DUF1001-domain-containing-protein	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	3.03623e-98
NC_019748.1\|WP_015192223.1\|1075653_1076982_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NC_019748.1\|WP_150109034.1\|1063070_1064366_+\|extracellular-solute-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.81586e-138
NC_019748.1\|WP_015192230.1\|1082492_1082747_+\|SemiSWEET-transporter	gnl\|CDD\|226580	COG4095, COG4095, Uncharacterized conserved protein [Function unknown].	1.37599e-17
NC_019748.1\|WP_015192218.1\|1069989_1070823_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	2.50532e-17
NC_019748.1\|WP_041619156.1\|1068282_1068819_+\|phycobiliprotein-lyase	gnl\|CDD\|312763	pfam09367, CpeS, CpeS-like protein. This family, that includes CpeS proteins, is functionally uncharacterized.	1.4675e-82
NC_019748.1\|WP_041619762.1\|1080558_1081260_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.57954e-131
NC_019748.1\|WP_015192219.1\|1070880_1072389_-\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|273653	TIGR01488, Phosphoserine_phosphatase, Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity].	2.51224e-05
NC_019748.1\|WP_015192221.1\|1074213_1074786_-\|DUF924-domain-containing-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	2.39714e-91
NC_019748.1\|WP_015192225.1\|1078406_1079576_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	5.55976e-153
NC_019748.1\|WP_015192213.1\|1066952_1067714_+\|phycobilisome-rod-core-linker-polypeptide	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	7.392e-76
NC_019748.1\|WP_015192214.1\|1067810_1068083_+\|CpcD-phycobilisome-linker-domain-protein	gnl\|CDD\|215022	smart01094, CpcD, CpcD/allophycocyanin linker domain.	3.16507e-08
NC_019748.1\|WP_015192210.1\|1064428_1064983_+\|phycobiliprotein-lyase	gnl\|CDD\|381208	cd19433, lipocalin_CpcS-CpeS, CpcS/CpeS phycobiliprotein lyase family. Phycobilin lyases covalently attach a chromophore to the Cys residue(s) of cyanobacterial phycobiliproteins. They include Synechococcus sp. PCC 7002 phycocyanobilin lyase CpcS which attaches a phycocyanobilin chromophore to C-phycocyanain beta subunit and to allophycocyanin alpha and beta subunits, Synechococcus sp. PCC 7002 phycocyanobilin lyase subunit CpcU which forms a heterodimer with CpcS-I to attach phycocyanobilin to beta-phycocyanin and to allophycocyanin subunits, and Prochlorococcus marinus phycoerythrobilin lyase CpeS which attaches 3Z-phycoerythrobilin to phycoerythrin. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	2.37017e-45
NC_019748.1\|WP_015192222.1\|1074847_1075444_+\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	1.81706e-132

>NC_019748.1|WP_015192219.1|1070880_1072389_-|haloacid-dehalogenase-like-hydrolase
MSEQIKKTEAITSVATASQNTPIIIDFDETLFLRNSTAEYLDNLKPRILGFLLLKFLYLLKPWNWLPEKFKKSKVEDWFLVITSTIFLPWTWFFWQKKARKLAKRYQNLELLAAINNIGSPIIVATVGFNFIVNPILNQIPIKYDRLVGCRFWQGFKDRTEGKLLMLKKVLSQEQLASAIAITDSEDDLPLLREVAKPCLVIWPLAEYIPPLQNVYLPFLYVEKVKRFGEQYLAKVIIWEDLPLLWLAFSWQASNTLLHGTSISLFLISFWCVYEIGYYENDFVAEKYEAKPKLSNQYHQYKKMMQTWHPWLWALMFAVLGDVFLTKAEGITTPVNYELIFPQLQSLNPIWIHLIFWIFLLLTTRFCFWIFNYLNKHTRTWFYLLLQSCRYYGFLAIAPTNLIGSSLICSQILSQTILYIVYRYAGGNANNWPSQVPRRMLRMVMFSLILSAIAIGARDFSLWLNFQTWAIMAWCVIQSRRQILNFISQIKPVVKDGSNQVT
>NC_019748.1|WP_015192218.1|1069989_1070823_-|2OG-Fe(II)-oxygenase
MNIHQNQVNLNQNLIELNSFTNSIAKLRQDSESLQKTYNSGQPYPHLAIDDLFEPTILDRIVAEFPKTQDRDWIVWNSNYELKTTSRGIVGLSPFTQFFCLWLNSSEFIDELKKITGIQDLIPDPLFFGAGLHQMYRDGWLDIHADYTKHPTLPLIRRINLLIYLNRDWKPSWGGDIELWSETDKENRVGYTPDFNRTVIFPTTSETLHGVPKRLSCPPEQSRKLISIYYWSPAPSLIKAGTPIIWSSQQNWQNKVRKILRNIATNISGDKGNGFGL
>NC_019748.1|WP_150109035.1|1069585_1069894_+|CpeR-family-transcriptional-regulator
MLPPVAQKKMQAWIRSRHLICSGHFFIFETLEYSTVERFEECVKSLGGTLISVEPTKKVWIGNHRQVILYQAKASLHTPHHALNQYWIKYGGFYTRFDERPC
>NC_019748.1|WP_015192216.1|1068903_1069530_+|DUF1001-domain-containing-protein
MLPTIDNSQTQETNLLIDLAKLMAGDFSNHKQALADSKTYAHIRIFFRPLPYEFFSGIGFYSEQTYDYDLWSPYRQGVHRLIDCGDEIYIENYSLQDAYLYAGAGHNRDILLTINPNCLERRYHCSMIFKKDGDLFRGSVEPGNRCLINRNGTETYLVSEVELTEATWISWDRGMDLVTHQQIWGSAAGPLKFEKRASFAHELPLLKR
>NC_019748.1|WP_041619156.1|1068282_1068819_+|phycobiliprotein-lyase
MDITRFVELSFGRWRSQRSAHHLAFSYFEQVISTIDIEPLELDDPQVINLCESYKIAPQLASVPFKMSWEGESDWDDNEVVKGSTILVPIPDLQEPTKGKLLREQGYAETIPAIGHYQFSNDGTFVLMTDYERATAEEKIWFVTPNLRCRVSLIKTSDGNGATTASFASEIRSLTTNS
>NC_019748.1|WP_015192214.1|1067810_1068083_+|CpcD-phycobilisome-linker-domain-protein
MAMTIDRNSFQSDYSSRTVAIEVTNLCRQDIMKNSNYVIRVPLSQMSSSIQSITRMGGKVNQVTFDSISATGKSVKTTTEKSVQSAVKNK
>NC_019748.1|WP_015192213.1|1066952_1067714_+|phycobilisome-rod-core-linker-polypeptide
MSLWITDVKPVELRNNFSNEDLEVIIRAVYKQVLGNQHLLEGERLVSAESLLRDGDITVRGFVRMVGQSELYRSLFFEKVSQYRFIELNCKHFLGRAPLNQAEISQHVQIYNEHGYEAEIDSYIDSDEYLNSFGENIVPCPRTESNQKTLQNVGFNRTFALYRGFASSDRDKKAQLITDLATNRATPIVFPSKGKGGTPGNTNKRFRIKATKASIGSLNRVSNMTYDVGYQQLNQKIKNIQRIGGKILSITEI
>NC_019748.1|WP_015192211.1|1065575_1066451_+|phycobilisome-linker-polypeptide
MAFGPASELGVALFEDTAPLEYMPGLSEEERESIIKAVYRQILGNAYVMESEQATVPESQFKLGNLSVREFIRAVAKSDLYRSRFFETCPRYRFIELNFKHFLGRSPEGLEEMRKHSTILDTQGFNAEIDSYLDSDEYQNAYGENVVPYYRGYKTQPGQSMVEFTHMFALLRGASSSDFKGSLSGKSPVLNKYAIQSTPLAVIPPSGGVAGDGWSFQDTGLGARTRQGVGAGANGKVYRIEVTGYSSPGAVNRVSKFRRSNKVYLVPYDKLSEEYQRIHQQGGKIASITPI
>NC_019748.1|WP_015192210.1|1064428_1064983_+|phycobiliprotein-lyase
MNTSVFEQFFDHCVGNWQSERTYHYLGHQEIERSRTEFEIKPLTKAQKEQVLADNEYQQVNDLDSFPGFNLGFYTISDKGEEVSQNLNLMFVPKTENGLWLEGDYLRDRAYEEARPIISHFQFNSQTKELLMTTNYTKVVSVDSITLTNPDLRIRKILNYQRPPAGKPLEKVLLVGFGVEQKVI
>NC_019748.1|WP_150109034.1|1063070_1064366_+|extracellular-solute-binding-protein
MFKNSDFKIKKTLKFLSYFLILGCSVLVLSLIILPALTQQATTVTVLIQALEAAQWQPLVTEFNQTHPQIKLQIIEGPNATNQVEDLYTSSFLLGQSPYDLVYMDIVWVPKFAAAGWLLPLSDRLTTTELKEFLAGDVNGGTFQGQLYRMPFRSDAGMLYYRQDLLSANNYQPPRTFEELMAISQDLQEKGVSQWGYLWQGKQYEGLSAMFVEILQGFGGFWIEPDTLEVGLDQPEAIRGVEFLRSTVAKNISPAGVTTYAEEETRRLFQEGKAIFLRNWPYVVGLASAEDSPIQGKFAIKPMVHAPGYPSGACQGGWGLGIAANTQHPDAALEVIKFFASEDSQREFVLATGYVPSRRSLFNDPKIVAKYPHYPELLKVVESSALRPPIAQYAQASDILQRYLSAALTNKMNPTEAMQAAAKETRRLLIN
>NC_019748.1|WP_015192221.1|1074213_1074786_-|DUF924-domain-containing-protein
MEFEEVLNFWFGKPESEGYGQPHQFWFVKDNDVDREIKSRFYSVYQLAAKGKLNFWQEKPLSCLALIIVLDQFPRNMFRGKPQAFATDIFALQYAQFALSQNYDQQLLPVQRWFIYLPWEHSENLEHQQTAVNLFLTLKDDPNSARTIEYAMRHLEIIERFGRFPHRNQILDRESTPEELEFLSQPGSKF
>NC_019748.1|WP_015192222.1|1074847_1075444_+|urease-accessory-protein-UreG
MNSFRIGIAGPVGSGKTALLDALCKSLREKYHIAVVTNDIYTQEDAQFLVRSQALSSDRIIGVETGGCPHTAIREDASINLIAIEELEHRFEHLDLVFLESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPMVGASLDVMERDTKKMRRDKPFVFTNLKTKQGLENVINFITNQKV
>NC_019748.1|WP_015192223.1|1075653_1076982_+|urea-ABC-transporter-substrate-binding-protein
MSKLGRRKFLIYGSAGIGTSILLKACANGGGDTNTTETPSNTNDAATPASSSSGDTIKVGILHSLSGTMAISETTVVEAEKLAIKEINAAGGVLGKQIEAVTEDGASDWPTFAEKAAKLIDNDKVVTVFGCWTSASRKAVLPVFESKKHMLWYPVQYEGQECSNNIFYTGAAPNQQIEPAVDWLLENKGKQFFLVGSDYVFPRTANTIIKEQLKAKGGTVVGEDYLPLGDTEVTSIITKIKAALPDGGIIFNSLNGDSNVALFKQMQGAGLTADKYPTMSVSIAEEEVRQIGKEYLLGHYAAWNYFQTVDSPTNNKFVEAFKAEYGEDRVTNDPMEAAYIMVYLWKQAVEQAGTTDLEPVRKAAVGQEFDAPEGKVKMFPNHHISKTVRIGQVRDDGLFDIVWSTEGPVDPVPWNQYVPETKGFACDWTDPNKGGKYKVETT
>NC_019748.1|WP_015192224.1|1077172_1078339_+|branched-chain-amino-acid-ABC-transporter-permease
MTALIEGLFNGISIGSVLLIAALGLAIVFGLMGVINLAHGELMMLGAYTTFVVQNVFKPLGSPWFDFYIIFAIPVAFLVAALAGLVLEKGVIRFLYGRPLETLLATWGVSLILRQFVRSVSWMLIISLVVFCLLFFGGMTVLSRRPNWSRIRNWAIAILIPLSAAIATLTGFLINKTGQIALNRAWFSARNVDVTAPSWLRGGLKILGFQMPYARLFIIVLTILCLLGVYWFLNRSAWGLRIRSVTQNRSMSSCLGIPTAKVDALTFALGSGLAGIAGVAVSLLGSVGPNTGQNYIVDTFMVVVVGGVGNLLGTIVAALGIGILNYLIGSGTLALIFTSTESLKPLVDFFLFFATISMAKVMVFALIIAFLQLKPAGLFPQKGRTAEL
>NC_019748.1|WP_015192225.1|1078406_1079576_+|urea-ABC-transporter-permease-subunit-UrtC
MDVEVKTGFEKRREQRQKKLVEIVTIAVLTIVFGIILPLFIPAFRLRLLGRFISLAIVALGIDLIWGYTGLLSLGHGIFFALGGYALAMHLNLQPQGQLPEFFTLYGVSELPWFWQPFNSFLITIIALVVIPGIVAGLLGYLVFRNRIKGVYFSILTQAALIVFFNFFNGQQKLINGTNGLKTDTQTIFGVLASSRQAQLAFYEISIICLILVYLLCRWLTIGRFGRLLVAIRDDETRVRFSGYNPTGYKVLVFAISGAIAGLAGALYTVQTGIITPNAMDVAFSIEMVIWVAVGGRGTLIGAIFGVLLVRLAQTFLSERFPEVWLFFQGALFLIVVTVLPTGIIGWWRDDGWEKLLNFFGYRRPVVTYPSLEEDPEIQREREELTPKQ
>NC_019748.1|WP_015192226.1|1079687_1080440_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MTTSKILEIENLTINFDGFKALNNLNFSMDTGELRVIIGPNGAGKTTFLDVITGKVQPTEGRVLFKGKNIKKTPEYQIACLGIGRKFQTPRVYLNLTVRENLDLVCNRNKSVFSTLFNRPAATEMRTVAELLETIGLEAKADLAATLLSHGEKQRLEIGMLVAQSPDLLLVDEPAAGLTDEETENVGALLLSLAESHSIIAIEHDMEFVRQIANNKVTVLHQGSVLCEGTMDQVQNDPRVIEVYLGQPIT
>NC_019748.1|WP_041619762.1|1080558_1081260_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLQVRNLNVYYGESHILRNVDLSIPSGQMVCLIGRNGVGKTTLLKTIMGLLKPRTGEIIFNDLPITKLPTDRRARMGIGYVPQGREVIPRVTVKENLLLGIEARPEGRKGNEEIPEEIFDLFPVLKTMLSRMGGDLSGGQQQQLAIARALMGKPRLLVLDEPTEGIQPSIILEIEAAVKRIIEATGISVLLVEQHLHFVRQADRYYAMQKGGIVASGSTDQLSQQVIQRFLAV
>NC_019748.1|WP_015192228.1|1081305_1081695_-|hypothetical-protein
MELVYRGVRYNNNKSPLSIETQGKSGIGAAEARSDREIFSAQSKIATKNNFPFLRYFKQLFFPSDAKRVLNPFLFLYVYKSQLLETYWQLDERKRLEHCWYLTLALNPKIYRISDRPIQLKYRGVTYYR
>NC_019748.1|WP_015192229.1|1081966_1082425_+|hypothetical-protein
MVQNWLTIDGVIKSGHQVASGLAGDSPYPQGTIEMQLPFFQERGLNLSSFFLGTLNISIAPATFILKHPEYTFKQVQWHPDYLAEDFSFSACQIIFQTKNYNGWIYYPHPETKIGHFQDNSTIEVIAPFIPSLNYGNRVDLLINPDAVIIVN
>NC_019748.1|WP_015192230.1|1082492_1082747_+|SemiSWEET-transporter
MNLITVIGLLAGGLTTIAFLPQVLKTWKSKSAKDISLGMFFTFCTGVFLWIIYGFCVNDLPVVVANIMTFIFASTILYFKFKYG

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Crispr_ID: NC_019748_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_4

2796866-2796970

TypeV

Consensus_repeat	Method
CCGACTCCTCCAATTAAAGTATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019748_4

>merge|NC_019748|4|2796866-2796970|CRISPRCasFinder
CCGACTCCTCCAATTAAAGTATCAATGCCAGTAACTCCGTTAAGGATATCGTTGCCTGCTTTGCCTTCTAGTCGATCATTGCCGACTCCACCAATTAAAGTATCA

>NC_019748|4|4|2796866-2796970|CRISPRCasFinder
CCGACTCCTCCAATTAAAGTATCA	ATGCCAGTAACTCCGTTAAGGATATCGTTGCCTGCTTTGCCTTCTAGTCGATCATTG
CCGACTCCACCAATTAAAGTATCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015193690.1\|2812214_2812799_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193675.1\|2789099_2790392_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193674.1\|2787489_2788836_-\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|273468
NC_019748.1\|WP_015193684.1\|2804104_2805532_-\|DUF3084-domain-containing-protein	unknown	unknown	gnl\|CDD\|226809
NC_019748.1\|WP_150109061.1\|2803385_2804108_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381599
NC_019748.1\|WP_015193670.1\|2783533_2783758_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99784
NC_019748.1\|WP_015193689.1\|2809645_2811904_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|184038
NC_019748.1\|WP_015193676.1\|2790433_2791714_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_150109059.1\|2792171_2792642_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193671.1\|2783953_2784451_-\|2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|379083
NC_019748.1\|WP_015193678.1\|2792651_2793719_-\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|367001
NC_019748.1\|WP_083856887.1\|2794005_2795190_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NC_019748.1\|WP_171815453.1\|2801794_2802922_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_019748.1\|WP_015193686.1\|2806635_2807415_+\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|180949
NC_019748.1\|WP_015193685.1\|2805691_2806369_-\|global-nitrogen-regulator-NtcA	unknown	unknown	gnl\|CDD\|163409
NC_019748.1\|WP_150109060.1\|2801204_2801564_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193688.1\|2808543_2809467_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|237667
NC_019748.1\|WP_015193672.1\|2784632_2785754_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100085
NC_019748.1\|WP_015193687.1\|2807896_2808547_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	unknown	unknown	gnl\|CDD\|236837
NC_019748.1\|WP_015193673.1\|2785972_2787502_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015193685.1\|2805691_2806369_-\|global-nitrogen-regulator-NtcA	gnl\|CDD\|163409	TIGR03697, NtcA_cyano, global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C. [Regulatory functions, DNA interactions].	4.22863e-126
NC_019748.1\|WP_015193674.1\|2787489_2788836_-\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|273468	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.83931e-150
NC_019748.1\|WP_015193684.1\|2804104_2805532_-\|DUF3084-domain-containing-protein	gnl\|CDD\|226809	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown].	4.47994e-102
NC_019748.1\|WP_150109061.1\|2803385_2804108_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	5.87977e-58
NC_019748.1\|WP_015193670.1\|2783533_2783758_-\|hypothetical-protein	gnl\|CDD\|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	0.000264429
NC_019748.1\|WP_015193689.1\|2809645_2811904_-\|molecular-chaperone-DnaK	gnl\|CDD\|184038	PRK13410, PRK13410, molecular chaperone DnaK; Provisional.	0
NC_019748.1\|WP_015193671.1\|2783953_2784451_-\|2TM-domain-containing-protein	gnl\|CDD\|379083	pfam13239, 2TM, 2TM domain. This short region contains two transmembrane alpha helices that are found associated with a wide range of other domains. This domain may be involved in cell lysis or peptidoglycan turnover.	8.4848e-16
NC_019748.1\|WP_015193678.1\|2792651_2793719_-\|potassium-channel-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	1.06768e-34
NC_019748.1\|WP_083856887.1\|2794005_2795190_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NC_019748.1\|WP_171815453.1\|2801794_2802922_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.52208e-38
NC_019748.1\|WP_015193686.1\|2806635_2807415_+\|enoyl-ACP-reductase-FabI	gnl\|CDD\|180949	PRK07370, PRK07370, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_019748.1\|WP_015193688.1\|2808543_2809467_-\|J-domain-containing-protein	gnl\|CDD\|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	6.49308e-68
NC_019748.1\|WP_015193673.1\|2785972_2787502_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	2.51302e-100
NC_019748.1\|WP_015193687.1\|2807896_2808547_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	1.94159e-95
NC_019748.1\|WP_015193672.1\|2784632_2785754_+\|site-2-protease-family-protein	gnl\|CDD\|100085	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.	3.22196e-81

>NC_019748.1|WP_083856887.1|2794005_2795190_+|aspartate-aminotransferase-family-protein
MNTYGRFPIAIEKGEGCRLWDTEGKEYLDFVAGIATCTLGHAHPALIETVTQQIKKLHHVSNLYYIPEQGQLAQWLVEHSCADKVFFCNSGAEANEAAIKLVRKYAHTVLDFLEQPVILTAKSSFHGRTLATVTATGQPKYQKDFEPLVDGFAYVPYNDIRAIENAIADIDEGNRRVAAIMLEPLQGEGGVRPGELEYFLRLRKICDENNILLVFDEVQVGVGRSGKLWGYENLGVEPDIFTSAKGLAGGIPIGAMLCKDFCAVFEPGNHASTFGGNPFACAAALSVLQTIERDNILQNVQARGEQLRVRLRAIANQDPHLFTEVRGWGLINGMELQSEIELTSVEIVKAAMQAGLLLAPAGPKVLRFVPPLIVSEAEIDEATAILEQVIAGLN
>NC_019748.1|WP_015193678.1|2792651_2793719_-|potassium-channel-protein
MRNFSFEQKYGRLRKELIAGAVVLAATVIIGSCWYWLVEEWSWLDSAYMTIITLSTVGFGEIHPLEPRSRIFTICLILMGLITIGYIVNRFTEALIQGYFQEGIRLRQERRLLETLEQHYIVCGFGRMGSQIAREFAAEGIMFVVIDSRSEQIELAQELGHIVVQGDATLDESLSKARIEKAVCLVAALPSDAENLYTVLSAKTLNPYLRAIARASTEEAVQKLQRAGADAVVSPYITGGRRLAAAALRPQVMDFVDGIITGANRSYYLEEFLIDAQICPYVGKSLKDARLRSQSGALVLAIRRFDGNLIAGPTGDTLILERDALICMGTPEQLRELNQILGPISSQLPRLPKQK
>NC_019748.1|WP_150109059.1|2792171_2792642_+|hypothetical-protein
MLLFKNRYFWSCQLMVISSLLVATPAWSRPHDTSHETVVKQPVLNSQNNYSNGLSYTQKNQLIDLLRGSSRDSSLLNPSLRIKIANQIHSLPPGIEKRLARGKGLPSGLAKKVNLPNEINEYLNLSQELKIIVLGSSVVVLDPFNNIILDVLQYIF
>NC_019748.1|WP_015193676.1|2790433_2791714_+|hypothetical-protein
MVKSNLNFTWQELNQEKAILYEYFRQYLSNQSPTEVLDEFRCLFIEGRSKQLNAREALEKIVFSQQGQEKFDYIINHCCHIIINYWSNKPELQEFIPRLIDIFNSVNPQINYYDRRKKRLLKLVCDFKNTEQYLKLTRLVELLSSSQTIDLSNNKNVGDLAKRYFYLYKDLLLGDEHSQEEKKMIREIRKNNQKCFEFQLSQHIIYRARLVQIARARQISQGAGRIIRRVNNPTLLSEKDLKIAIKQYMGKINQEGTIWQSAQKFLTENKFRRSYREYHRDLYRYLINSISPKQEDYQFANKLKQIFNQIKSPSNSPELTDVAMLSTCRQLLKYLVAATYKQPEHYQFIELVKCLGTVQTITLLIKIVLICPQAKPDLEKRFAILFTHYQSYKLTEVPWLVKSLEHLLVAFSIYFGKIDLSIAKII
>NC_019748.1|WP_015193675.1|2789099_2790392_+|hypothetical-protein
MENHLNKLYLSNTEKEQQIIYNHFLQATQTDSPERVIEKFRYLFIKATGYDDNNVRLALEKIVNSQTANDEFTFILNRCCHIIINRWQMQSDLKKHIPELIAQFEQALPPGGANSRTSRKLRQLIKDFQTHEHYLKLQRLAKVIGETQENNFNKSQSIGNLIQRYPYLHQHCLLSEDSSYEFKQTVKKIQKNIQRSYEVNLSQYVTYRVRLVQKTSPNHNSQINKISVTQIQPVQNPTLLSDQELVTALRQYVGKVEKGYSYRDLSQNFLTCQAQTSSYKAFKQDLYEYLMFGIEGKYAKHQFNHRLCHYLQNIFPDCDSQKFNEFLMIRTCSQLLKLLIVDSKQNPSHYLFVDLITNLGETKVVGLLLKIVLLCQKIKPYLEQRFSILFSHYESFSKEGVPWLIKSLENLQIAFSIHFGKADLSLVKII
>NC_019748.1|WP_015193674.1|2787489_2788836_-|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MISLHELSKILDLDHIKLTESELNKSATGITTDTRNLKPGEIFVALSGENFDGHNFASVAVEKGAIALILSRALSLVTDTPQLIVSDTLVAYQQIANWWRNCFDIPVIGITGSVGKTTTKELIAAVLNTQGKVLKTEANYNNEIGVPKTLLELRSGHDYAVIEMAMRATGEIALLTNLTRPTIGVITNVGTAHIGRLGSKEAIARAKCELLAQMPLSSVAILNHDNPLLLQTAAKVWHGETLTYGLAGGDLKGELLEDNILKVEGREFPLPLAGIHNASNYLAAIAVAKVLELDLDLLSPGLTVELPKGRARRYEIQDNIVILDETYNAGFESMIASLQMLKDTPGTRHLAVLGTMKELGKYSAQLHHQVGEKVKELDLDRLFVLVDEPETEAIATAAQGISYECFDNHQDLISTLQAEITKGDRILVKASNSVGLSRIVEELLKCKT
>NC_019748.1|WP_015193673.1|2785972_2787502_-|uroporphyrinogen-III-C-methyltransferase
MQNLGKVYLVGAGVGELAYLTLRGKQLLTEAEVLIYDALVDSDLLTLVSPNCLKLDVGKRGGQPSTPQAQINQLLVAYCLQGKQVVRLKSGDPFIFGRVREEIEALVAAECAFEVVPGISSVLAAPTFAGIPLTDKYLSNCFAVLSGHQPELLDWNALAKIDTLVILMGTRYLAEIVTKLLACGRIADEPVAIICNCSRPEQKIFQGTLTDIVDRTRGISLSPAVIVIGKVVDLASQLQSSPSSAVLTGKTILVTRAAEQSSQFRDLLQQHGAKVLEMPALEIMPPSSWQTLDNAIANLPQFNWLILTSANGVEYFFERLATLGKDARSLAGIKIAVVGKKTAATLQRKKLQPDFIPPDFVADSLVAHFPEVLEGQKILFPRVETGGREILVKELTTQGAEVTEVPAYQSGCPQKITAEIWQALQQKQIDAITFASSKTVRNFHQLVQQELGHSDILLTTLLENICLASIGPQTSQTCQELFNRVDVEAQEYTLEGLTTALVNYFSNIK
>NC_019748.1|WP_015193672.1|2784632_2785754_+|site-2-protease-family-protein
MNGNIRIGNLFGIPFYINPSWFFVLGLITLTYGANLTRFPQLQGITPWILGFFAAILLFSSVLAHELGHSFVAIAQGIQVKSITLFIFGGLATLEKESETPLQSFLVAIAGPGVSLLLFALFTVIGITVPLNEPLEAIVSLLASINLVLALFNLIPGLPLDGGNVLKSIVWKITGNPNKGIIFAGRVGQFFGWLAVIIGALAILGVSQIGSFWTLLIGWFLLQNAGFAAQSATVQEKLSQYTAEDAVIPNSPIVSGNLTLREFVNDYVIGKNQWQKFLVTNETGQLIGTIATEDLKQIATSQWTETLVNELLQPIESIVTVPANQSLLKVIQLIETKDIKELAVVKEDGVVIGLLEKSSIINLLQQEAQANGN
>NC_019748.1|WP_015193671.1|2783953_2784451_-|2TM-domain-containing-protein
MSNFPLSYPESYSPEDIQQILQIALARKAEGEELTRQQLWEIASELEIDSQSLQAAEQDWFERKAVQEKREAFNLYRRSQFKQRLTKYLIINIFLLSFNIAIAGTITWSIYILLFWGLSIALNGWKAYQTQGEEYERAFQRWDFQNEVKRTFATFWEKLQKSWQV
>NC_019748.1|WP_015193670.1|2783533_2783758_-|hypothetical-protein
MSNYTPVSCELYDHLEAIATLKQECSLTYKQENGQWAKARGKIVDVYAADGADWCKLSDDTVIRLDQIEDFESN
>NC_019748.1|WP_150109060.1|2801204_2801564_+|hypothetical-protein
MLWSILCLVCGYDLASSTKMFYLSFISGLVGGITGFIIGSLVGAIRWQKTPGTLFLINQPLVVVSWILIFWLVGIIVGAFIGGLIFFNLKFEIFLYLLFGIVFITGIAIIIASYLLGLI
>NC_019748.1|WP_171815453.1|2801794_2802922_+|WD40-repeat-domain-containing-protein
MLRFPSSIKTWELHNSTWTNAISPNGEMLATVAGPLTRRRLPNNIREQGHPHVEIRRISDGAILRTLDFFSAGSLAFSPDNSLIAAGGYEGAVKIWRISDGQLLHSLIPSDNLSSNTNNLAFSPDGQTLVTRASRGSEQFFHFSPISVWNIANGEKRYTLLGKSRNSIAISPDGQLLALINMDGLVTLNRLSDGTVIRQLGDTTRLAYSLNFSPDGRLLALIGGYPASISGDKIHLYRIEDGKLLRIIYTSLDKEGINNIAFSPDGRYLAASYGVYVTSFLFGGAVYPKTSHGRIRFWQVDNGQPMQTLRGHKGGTYTLAFTPDGKLLASAGRDGTIRFWLMPPRNYNWLWLLGAGGLITLGYWQRAYLIRWLNW
>NC_019748.1|WP_150109061.1|2803385_2804108_+|glycoside-hydrolase-family-protein
MNNNIEKAVICTGCWLIGMGAVFVPQDEVSPNNNSILKQVQQETSINFPALQYKKPKILPQRSFIPEPQPELPRLPIPESVQPTQPASIPVMSKTIALVKEFEGFRSQAYWDTDGTPVIGYGLSKIGGKSVNIGDRIEQNEADHALEKQLQAIQTQIEQAVTVKLNAHQLGALTSIAFNVGVEGIKNSTLLRKVNAQDYLGAANEFLRWNKANVGGRLVTLAGLSRRRQAERELFLTPVD
>NC_019748.1|WP_015193684.1|2804104_2805532_-|DUF3084-domain-containing-protein
MTSAYILIAAILLLGGLIAALGDRLGTKVGKARLRLFKLRPRQTAMIVTVLTGTIISASTLGILFTLSESLRKGIFQLDDILKELRTVQQELAAVTEEKEQVKNELSNVVTQQDQAQQQLNQTNRNYQQAQAQLKTISQQANQLKTELNNLLQERQKQLQQLKTLKQESQQLQQKLTEKETKLVEQDRILLDRETRLNQLERQQEVLQQQITVQDQKISSLDNAIADKDFNLQLRKEQLNQLETQIQYLEKEVAILEQYYQTYQELREKRIAIFKGQVLASATVRIVDPNAAMSAIDSVLRQANRSAIKATLFQENNQEERVVKITKAQVEQLAKQIQDGQDYVLRILSAGNYVQGEKEVRVFADLAVNKEVFTAEEEIATVSIDNSQTNTTEIQEQIDWLLAASKFRAGRAGILGEIQVGDEQISSLINFVEKIVDSKESIDEIRAVVAETTYTAGPLKLKLLAVSNGKVMFSL
>NC_019748.1|WP_015193685.1|2805691_2806369_-|global-nitrogen-regulator-NtcA
MELSLTQNQPLASVFRKIGRSSFPPVVETFERGKTIFFPGDPAERVYFLVKGAVKLSRVYEAGEEITVALLRENTVFGVLSLITGQRSDRFYHAVAFTSVELLSAPIQQVEQSLKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPTNEGIRIDLKLSHQAIAEAIGSTRVTVTRLLGDLRQENMISIHKKKITVHNPVALSQQFT
>NC_019748.1|WP_015193686.1|2806635_2807415_+|enoyl-ACP-reductase-FabI
MLDLTGKNALVTGIANNRSIAWGIAQQLHQAGANLGVTYLPDPKGRFEKKVSELVAPLNPTIFLPCDVQDDAQMDATFATIADKWGKLDILIHCLAFADKEDLSGNFSETSREGFTKALEISAYSLTSLSKRAKSLMSEGGSIVTLSYLGGVKVIPNYNVMGVAKAALEMSVRYLAAELGSENIRVNGISAGPIRTLASSAVGGILDMIRHVEEVAPLRRTVTQLEVGNTAAFLCSDLASGITGQVIYVDSGYEIMGMV
>NC_019748.1|WP_015193687.1|2807896_2808547_-|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH
MTPERYQKFQQVLNRRQLDLTVITEDVHKPHNFSAIIRTCDAVGVFAIHAVNSRSSMPIYNQVAKGSEKWVACHTHTNIESAVSDLHQQGLKVYAAHLSKQALDYRMIDYTKPTAILLGAEKSGVTQKAADLVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQRLAAGLYERVHLAPDIYEQMMFEWSYPEVAASYRQQEKPYPRLGTKGEIIIS
>NC_019748.1|WP_015193688.1|2808543_2809467_-|J-domain-containing-protein
MQNVRNYYEILGVTKNASSEEIKKAYRTLARQYHPDRNPGNKAAEEKFKDINEAYEILSDPTKRSQYDQFSKAWGKKGFAARNGKSNPFDFGNFANSKTTSGRTATTERDRVRVDASDYRPGTTKRERVVNPGATRRDIEAKLILPLDKAYRGGMERIRLEDGRSLEVEMPPGITNGQRIRLKGQGIGGGDLYLKIAVARHPIFVVQEADIYCQVPVTPAEAVLGGAIEVPTIDGLVKVTVPPGVRSGQRLRLANKGYLDANGDRGDQLVEIQIVAPKEISAEEKELYEKIKQLEQFNPRQNLIKSL
>NC_019748.1|WP_015193689.1|2809645_2811904_-|molecular-chaperone-DnaK
MGRVVGIDLGTTNSVVAVMEGGKPVVVANSEGMRTTPSVVGFNKDGELLVGQMARRQTVLNPQNTFYGIKRFMGRKYAELQPESKRVPYTIRRDELGNIKIRCPRLKKEFAPEEISAMILRKLADEASRYLGEEITSAVITVPAYFNDAQRQATRDAGRIAGLEVLRIINEPTAAALAYGLDQKRSQTIMVFDLGGGTFDVSILEVGDKVFEVKATSGDTQLGGNDFDKRIVDWLAEEFLEKEGVDLRKDRQSLQRLTEAAEKAKIELSGVTVTEINLPFITATPEGPKHIETKLSRPKFEELCGDLVSRLRRPLKRAISDAGISPIQINEVVLVGGSTRIPMVQDLVRSYIDLEPNQNVNPDEVVAIGAAIQAGILTNEVKDILLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDIFSTGENNQTMVEIHALQGEREMAAGNKSLGRFKLTGIPPAPRGIPQIQVSFDIDANGILQVTARDKTTGREQGITVQGASNLPEIEINRMIQEAEQFSQQDRERKEKVEKRNNAKALTDQAQRRLKEVTLDFGSQFATYYRRRIDTLCEDILRSLEQNDEITLDRAQADLQDTLYELNREVRLQYEDEEDDDFFGAIRRTFIGDDNKIDEDYSYDTRRSNYRDDYRPPNAGGWDNSPVRDSRDSWDDDPNNYQGNYRDDYRPSSDRRPEPRTNYRDDYGSRSYDDSQNRYQPRNSSYSDSNSSAQSRYYNSRNRPQNIPYENDWDDDDDEWF
>NC_019748.1|WP_015193690.1|2812214_2812799_-|hypothetical-protein
MSSLIKPFVVAHNIKTDGNVGVTFHIEPNHSPRAGENAIAWFALTRQGGESIPLSQCDCNLAVYQQSSPTQPILNPTLQSLDPEAQYQKVPGTTIIFPEAGSYQLEISGKPKLEGDFKPFKLSYTVNVSPGITQSTQEQNSQPNPIILATNNRNNQSSLNFLPWLFTAIAGMIIIAMIFKTRKSRTKSSTENKE

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Crispr_ID: NC_019748_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_5

2872261-2872502

Orphan

Consensus_repeat	Method
ATTAACCCAAGCATTAACATTATTTGGTTGTAATTCAATCACACGCTCAAAG	PILER-CR

2 spacers

The CRISPR arrays of NC_019748_5

>merge|NC_019748|5|2872261-2872502|PILER-CR
CATTATTTGGTTGTAATTCAATCGCACGCTCAAAGTTAGTCAATGCTTCTTCATATCGTTGTAAGCGATCGCAAAGTAATGCCCCTTTATTAAGCCAAGCATTAACATTATTTGGTTGTAATTCAAGAGCGCGATCATAACTAGCTAAAGCTGCCTCTAATCTATCTAAATTAATCAAAGCAACACCACGATTAACCCAAGCATTAACATTATTTGGTTGTAATTCAATCACACGCTCAAAG

>NC_019748|5|3|2872261-2872502|PILER-CR
CATTATTTGGTTGTAATTCAATCGCACGCTCAAAGTTAGTCAATGCTTCTTC	ATATCGTTGTAAGCGATCGCAAAGTAATGCCCCTTTATTAAGCCAAGCATTAA
CATTATTTGGTTGTAATTCAAGAGCGCGATCATAACTAGCTAAAGCTGCCTC	TAATCTATCTAAATTAATCAAAGCAACACCACGATTAACCCAAGCATTAACATTATTTGGTTGT
AATTCAATCACACGCTCAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015193750.1\|2871409_2871973_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019748.1\|WP_015193756.1\|2876695_2879224_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380193
NC_019748.1\|WP_015193753.1\|2875016_2875583_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NC_019748.1\|WP_015193758.1\|2880297_2880996_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019748.1\|WP_015193752.1\|2874386_2874938_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NC_019748.1\|WP_015193742.1\|2861008_2861608_-\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|224929
NC_019748.1\|WP_015193743.1\|2861717_2862260_-\|ATP/GTP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NC_019748.1\|WP_150109064.1\|2879748_2879844_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381054
NC_019748.1\|WP_150109063.1\|2876378_2876552_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315977
NC_019748.1\|WP_015193757.1\|2879259_2879559_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193744.1\|2862259_2863144_-\|DUF4388-domain-containing-protein	unknown	unknown	gnl\|CDD\|373017
NC_019748.1\|WP_015193749.1\|2870603_2871113_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NC_019748.1\|WP_150109062.1\|2863584_2864685_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340838
NC_019748.1\|WP_015193747.1\|2868181_2868739_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193754.1\|2875661_2876174_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NC_019748.1\|WP_083856888.1\|2870382_2870607_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019748.1\|WP_083856856.1\|2879803_2880097_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381054
NC_019748.1\|WP_015193748.1\|2868861_2870223_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_019748.1\|WP_015193746.1\|2864847_2867829_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143442
NC_019748.1\|WP_171815432.1\|2876245_2876398_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015193750.1\|2871409_2871973_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.71639e-20
NC_019748.1\|WP_015193756.1\|2876695_2879224_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	4.50112e-62
NC_019748.1\|WP_015193753.1\|2875016_2875583_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	9.47901e-05
NC_019748.1\|WP_015193758.1\|2880297_2880996_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.63851e-14
NC_019748.1\|WP_015193752.1\|2874386_2874938_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	0.00022427
NC_019748.1\|WP_015193742.1\|2861008_2861608_-\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|224929	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only].	9.42743e-25
NC_019748.1\|WP_015193743.1\|2861717_2862260_-\|ATP/GTP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	5.22394e-46
NC_019748.1\|WP_150109064.1\|2879748_2879844_-\|hypothetical-protein	gnl\|CDD\|381054	cd19588, serpin_miropin-like, serpin miropin and similar proteins. Miropin, the serpin from Tannerella forsythia, is thought to contribute to the virulence of periodontal pathogens by inhibiting neutrophil serine proteases. Miropin broadly inhibits serine endopeptidases (SEPs) including trypsin, neutrophil elastase, pancreatic elastase, subtilisin, and cathepsin G and cysteine endopeptidases (CEPs) including papain, calpain-like peptidase Tpr, and gingipain K through various reactive-site bonds. This is achieved by offering several target bonds of the RCL for cleavage within a bait region, instead of a single RSB as found in canonical serpins. In addition, promiscuous inhibition is facilitated by the capacity to insert strands deviating from the canonical length into the central sheet A, while keeping the prey peptidase bound and inactivated. The structural adaptation of miropin to provide a relaxed inhibitory specificity, which allows for formation of inhibitory complexes using different sites, is unique among serpins. SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.	7.18551e-11
NC_019748.1\|WP_150109063.1\|2876378_2876552_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315977	pfam13414, TPR_11, TPR repeat.	0.00139906
NC_019748.1\|WP_015193744.1\|2862259_2863144_-\|DUF4388-domain-containing-protein	gnl\|CDD\|373017	pfam14332, DUF4388, Domain of unknown function (DUF4388). This domain family is found in bacteria, and is typically between 102 and 135 amino acids in length.	6.52926e-10
NC_019748.1\|WP_015193749.1\|2870603_2871113_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	2.9502e-06
NC_019748.1\|WP_150109062.1\|2863584_2864685_-\|glycosyltransferase	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	7.00396e-107
NC_019748.1\|WP_015193754.1\|2875661_2876174_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	2.93169e-05
NC_019748.1\|WP_083856888.1\|2870382_2870607_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	9.08421e-07
NC_019748.1\|WP_015193748.1\|2868861_2870223_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.21521e-56
NC_019748.1\|WP_015193746.1\|2864847_2867829_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|143442	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.	0
NC_019748.1\|WP_083856856.1\|2879803_2880097_-\|hypothetical-protein	gnl\|CDD\|381054	cd19588, serpin_miropin-like, serpin miropin and similar proteins. Miropin, the serpin from Tannerella forsythia, is thought to contribute to the virulence of periodontal pathogens by inhibiting neutrophil serine proteases. Miropin broadly inhibits serine endopeptidases (SEPs) including trypsin, neutrophil elastase, pancreatic elastase, subtilisin, and cathepsin G and cysteine endopeptidases (CEPs) including papain, calpain-like peptidase Tpr, and gingipain K through various reactive-site bonds. This is achieved by offering several target bonds of the RCL for cleavage within a bait region, instead of a single RSB as found in canonical serpins. In addition, promiscuous inhibition is facilitated by the capacity to insert strands deviating from the canonical length into the central sheet A, while keeping the prey peptidase bound and inactivated. The structural adaptation of miropin to provide a relaxed inhibitory specificity, which allows for formation of inhibitory complexes using different sites, is unique among serpins. SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.	2.17888e-29

>NC_019748.1|WP_015193750.1|2871409_2871973_-|tetratricopeptide-repeat-protein
MLVTTMVMSAMLNLHSIAEIQSQEKIVAEFPAAIVQNHSNDPKVFVDRGKEYIDQQEYEKAIANFNRAIELAPKFAKAYFNRGAAYGLLGQSEKEIADYSRAIELNPQSAETYVARGKAYARLLEYAEAIADFDRAIELDPQSANAYYNRGLAYQTLRQDEKANADFNRAIELNMNNEVIRKGIKIH
>NC_019748.1|WP_015193749.1|2870603_2871113_-|YcxB-family-protein
MSEQIEIHFNGILSEEHFYKFNQYCRPPWARFIGKWFPWFYLGLMIVEAIGIPEYIASPRFSFDISILLLLLLLPQLTKRQIKKVWQSNKSIQEGFSGVATEENFVCNSSYGESKFPWNVMLKYKEVENIILLYIAINQAFILPSSFFNSEEDWQQFRQLVAERVPKKQ
>NC_019748.1|WP_083856888.1|2870382_2870607_-|tetratricopeptide-repeat-protein
MSVYPSNILEINPNYAEIWFERGIVLSNLGRKKEAFASFRKCNSINPDMVTNRVIKPKWQKLTQAVQNVFSFLK
>NC_019748.1|WP_015193748.1|2868861_2870223_-|serine/threonine-protein-kinase
MKEEILCNRYLIQKQLGKRGGRETLLAKDIQTEELVVVKLLQFGLDFQWEQLKLFEREAQTLQNINHPAIPKYLDYFEINSPEYQGFALVQTYIQAQSLAEQLDKGRTFTEAEIKQLAEQILKILIYLHSQNPPIIHRDLKPSNILLTNRSGNHIGDVYLIDFGSVQNVAAKQEGTITIVGTYGYMPPEQFGDRCILASDLYSLGATLINLVTRIEPADLPQQEGRIQFERVVNLSIQLKDWLKRMIEPSLDKRFSSAQVALDNLINLSQSESNDLNVVELSDRQKFYLQKSVNRLEIIIEPKTTKLSLLDFIIIVIGFLVFVVLEPGALAVLIIFVGIICISSVYYIQDNILPLFVKKKLIIEKQKIALTYQVFKFKYDIIPPTSNSFIYKLDKLETDRFENIVLNKIIIWAGRNKNELKKYEIKGLNEAELNWLSRELSDWLQLPIHHNDE
>NC_019748.1|WP_015193747.1|2868181_2868739_-|hypothetical-protein
MIHYQVIFDNIKPIPYQVPLVASFFIAWVIAIYLTYENRNHREIRQEEFSKLNDKFFSIVIVAMPLVFILLYGCSTFYNIFLLPDKIKNELVVEGKIKITSTELFDDYSSEKKWIKSFQIEEKKFVMFDIKSIKCFNNYNYMGNDYRYEEVNNVISNLSKKQRFVRASYHYYDSEKCISNFEIQR
>NC_019748.1|WP_015193746.1|2864847_2867829_+|L-glutamate-gamma-semialdehyde-dehydrogenase
MVVQTNTDQRYEAKTQEIARELIKVTREKGNIFAQMREGMRWDDKLLDWAMSNPGLRVQLFRFIDTIPALQSKAEVARHLQQYLGDESVELPSALKGILNFSDPNSFPAQTAAATITKAVETLAYKYIAGENIAEVIKTIERLRKEGMAFTIDLLGEAVITEAEAQSYLDRYIELIQQLSQKAQTWTRQAGIDLAEGKEISSVQVSVKLTAFYSQFDPLDPEGSKAKVCDRIRILLRKAQELGAAIHFDMEQYVYKDLTLAILKELLLEEEFRNRTDLGVTLQAYLRDSYQDLQDLIVWAKQRGNPVTVRLVKGAYWDQETIKSLQHHWQQPVYNDKAETDANFERMTCLLLENHEYLSAAIGSHNVRSQALACAIAETLQIPARRFEMQVLYGMGDKLAKALVKRGHRVRVYCPYGNLLPGMAYLIRRLLENTANSSFLRQNLEEKPIESLIAPPTVEANGIRPQSSSNNQFANAPDTDYAQAELRQKGQQALEQVRNSLGKTYLPLIDGEYVETAEYINSVNPSRSSEIVGKIGLISVEQAEQAMQAAKTAFPTWQKTPATERAAILRKAAQIMEEKRHELNAWICLEVGKILPQADAEVSEAIDFCRYYADEMERLDSGYNYDIAGETNRYFYQPRGIAVVISPWNFPFAIATGMTVAALVTGNCTLLKPAETSSVIAAKIIEILVQAGIPKGVIQFVPGKGSQVGAYMVEHPDTHVIAFTGSREVGCRIYAEAAKLKPEQKHLKRVIAEMGGKNAIIVDESADLDQAVAGVVSSAFGYTGQKCSACSRVIVLEPIYNTFIERLVEATKSLNVGVADAPSTQVGPVIDANARDRILEYIAKGKEECQLALSMSAPDGGYFIPPTIFSDVSPDATIAQEEIFGPVLAVIKASNFDEALTIANSTDYALTGGLYSRTPDHIDRAYQEFEVGNLYINRTITGAIVARQPFGGFKLSGVGSKAGGPDYLLQFLEPRVVTENIQRQGFAPIEGVD
>NC_019748.1|WP_150109062.1|2863584_2864685_-|glycosyltransferase
MQLSNSIIINLSFLLAQPTGISTYAANLIPYLRPLDPLLLTANAIKDFNYYPIPHNLTPAQGSIGHFRRLVWTQFFLPKIYQKLQANLLFSPVTEAPIYSQCRYVVMCHDLIPLRFPKTTSPLTNYFRYLVPQVLKQAEHIICNSEATAKDLTHFYGISPQKITPILLGYDVNNFSRLPQEKLDTIPQTPSYFLYLGRHDPYKNLHRLIEAFANLPQCTNYQLWLAGSTDPRYTPKLKQQAKELGISEQIKFLNYVSYQELPIIIQGAIALVFPTLWEGFGLPALEAMACGTPVITSNLASLPEITGDAAILINPDQVQEITSAMSEIATNNQLRSHLSHLSLIQASKFSWQKTAEATRQVLEQYY
>NC_019748.1|WP_015193744.1|2862259_2863144_-|DUF4388-domain-containing-protein
MSLTGFLDNFSLAEILQIIDSGYKSGRLVIKPSPEKQEQEFAGSYYLWFEQGKLVSVTNNFSNTYLLSFVEQQGLINHPKLQERIRQLCSTIEPVGLCLYKHGSLTKQQLQLILQTQLEEIYKLFEISFGWFKFEDISDQDKMPWSEMTGESIEARQLALNGLRKLTNWKHLESVIPESNSILEQLVTQHNLKLEPLEFKLWKFADGETSLQQFAKAFNQPIVTIQRAAYGLIVADLIEALPVFDISVQSSLSTNKNQILPEPKLATVGTQSVNTQPKVNNSLVSNLLRFLGNF
>NC_019748.1|WP_015193743.1|2861717_2862260_-|ATP/GTP-binding-protein
MEIFKIAIAGNVGAGKTTFIRTISEIEVVSTERPATDEVASLKKDTTVAMDFGKLTLNDEQVLHIYGTPGQSRFDFMWEIIIAKAHAWVMLIDAHRPEDFRSCRQILNFMTKKVPIPMIIGLTHMDCEEAWETEDIALALGYRNPNQRPLIVTVNAGERKSVAQCLMSLLQQMLSHALTN
>NC_019748.1|WP_015193742.1|2861008_2861608_-|roadblock/LC7-domain-containing-protein
MSSNNSKAAQVFAEAKKRRGWLVKSFDLIHKLFIKPNTSQQESHLLTEELSRVSPLLHQNVSEETTSVNPQLIKEDITMKIGNLNELIKNFVASTPDIQGAAIVSPDGLALTSVLPGEMDEERTAAMSAAMLSLGERIGKELVRGTIERILVEGDRGYSIMVGCGNEAVLLVLASKAAKQGLLFLEIKRLAGELTPVLT
>NC_019748.1|WP_015193752.1|2874386_2874938_-|YcxB-family-protein
MSEQIEIQFSGTLTKKYLYHLHHHYQPIWFNFFLKWLPWIFLGLMIYTLLSILGYISVSSPLYKPGYISVNSSFLYNIFLLLFLFFMSPWLFIKRQIKKILQSNKLIQGNFSGVATEPTLFWNSPYGESIFPWDAMLKYKEAKNTIILDTVINQTLIIPRNFFYSEEDWQQFRRLVISKVPKK
>NC_019748.1|WP_015193753.1|2875016_2875583_-|YcxB-family-protein
MPEKIEIHFGGILTEEHFYIYKQYCLPTWIEFFFKWLFWFYLGLTIVRWLSWFNLYSMIIKGLGNPRDIPLSFDEVISDVIGDVFIFICFLWLFFQSTKQNSKKAWQSNKLIHGNFSGVATEKTLFWNHPYGESRFPWDVMLKYREVKNIMMLYTEIDRALIIPRNFFYSEEDWQEFRQLVTSKVPKK
>NC_019748.1|WP_015193754.1|2875661_2876174_-|YcxB-family-protein
MPEKNEIEIHFSGTLTEEHLHIYHQYCLPTWLEFFSKYFKWLFWFYLGLMIVKALRIPGYIPVSPALFYDIFILWLLSRKRQIKKILQSNKLIQGNFSGVAREQTLFWDNHLYGLSKFSWNKILKYQEAKNIIMLYTGINQALIVPRSFFNSEEDWQQFRQLVADKVTKK
>NC_019748.1|WP_171815432.1|2876245_2876398_-|hypothetical-protein
MIAVISSICCVYPKAAIAKIDIPQMSAETCAVLSGKQKVDSRTFQYLYSN
>NC_019748.1|WP_150109063.1|2876378_2876552_-|tetratricopeptide-repeat-protein
MIFRQFIFLRIQDSVASYDRAIEIKPDYVAFLVNRGNALYILKCYEEELASCDRGYK
>NC_019748.1|WP_015193756.1|2876695_2879224_-|leucine-rich-repeat-domain-containing-protein
MDKTENFQSFAYLYEHQNQLPEATRNTLERLLKLSGTDDYEEAEQLLLKSTKLNLNNEIVRNLGKDFRLLQCLPNLQQLNGSGSWSGNDLSVLQSLTKLTTLSLLDCEIDDDNLDRIKSLTNLTSLNLSTPNVLIYGRTFHYTHNHITDLKPLRSLAKLEKLELSANPIKDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVRVYDAKNLIPLKYLTNLTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLTNLILNKNQISDLIPLQSLTNLTSLALNKNQISDLTPLQSLTNLTSLALNKNQISDLTPLQSLTNLTSLTLNKNQISDLTPLQSLTNLTSLCLVKNQISDLTPLQSLTNLTNLTYTNSHSTQITDFTPLQSLTKLTNLTLNKNEISDFTPLISLTNLTFLYLRRSWWSTIERINQLNSLPNNLRSLALSTQRICRTDAIKTINAAYVAIGYPMPEIIFCDGPTIANEYLTDRNERQLGKYLKYKLYQHTRNLLISHRRISRKLLFELKEHGFSSNQIIDLCKINCIDVITPIELSKEITLIDWFISRLDRIEPEIQQAFEILHQLLEHCPWVIPYEKVCIICDRPSKFSLDEENRFHAEGEPAFQFIDGWHTGYYYHGVELPTKYGQLSYHQWRSQWILEETNSELRRILLQEIGYGRLCEELQAIELDSWREYVLLRIEIDPKTYRNGYEVIEEPIHILKMICPSTELIHALRVPSNINSAREAVRWVNWEIDPEEFAIET
>NC_019748.1|WP_015193757.1|2879259_2879559_-|hypothetical-protein
MNKKPIRQGDVILIPTEQTEGQLLTHLTLAEGEVTGHKHRISEGQAELYQTNDTLYLKILSQTATLSHEEHQTISIPGGNWMVKIQREYEPRGWRYVAD
>NC_019748.1|WP_150109064.1|2879748_2879844_-|hypothetical-protein
MIVDRPFFCAIRDNQMGVILFMGFIREPISI
>NC_019748.1|WP_083856856.1|2879803_2880097_-|hypothetical-protein
MALPRFKLEYEADLNNVLRNLGMGRAFDEEDANFQGISTEPLMISKILHKTLVEVNEKETEAIAVTAMVVPSAMASTKKKKTFNNDSRSPFLLCNSR
>NC_019748.1|WP_015193758.1|2880297_2880996_-|tetratricopeptide-repeat-protein
MKSTHLISQSSAIALLSTICCIYPKAVTAQIDIPRMSAETCAVLSGKQKLDSRTLQYLLLLEEDFADPNPVAIALYKQVIQQCPQAYLDYQQRKRASNPFANNPIVNTDSTPLSNLTNTEPNNTNTSQTNEQQEMAKYDEAIRLHPNDAKAYLARGTARYDRKYYQEAIADYTEAIRLEPNNPLGYANRGLAEQYLGNKQNAIADYQIAAKLFQAQGDQDNYQRVLKLLEQI

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Crispr_ID: NC_019748_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_6

3071472-3072157

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CRT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	PILER-CR
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CRISPRCasFinder

9 spacers

cas2,cas1,cas5,cas7,cas8b3,cas3,cas6,WYL

The CRISPR arrays of NC_019748_6

>merge|NC_019748|6|3071472-3072157|CRT,PILER-CR,CRISPRCasFinder
ACAAAAAATTAACATCAACATCTAAGGTTAGTACACCCTGACGCGATCTCTTTCAAATTCTAAGTTATAGGGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACGAGCAACAGGTTCCACCATGACCCATTCATTCGTGTGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACCGGTTAACTAGCTCTGCCTCCGAATCTTTCTTTGCGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACAAGTCACCCTTCCCGATTCCCCGCAAAAAACTGATCCAGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACCTAGCTAGCTTTAGATTACTTTGGTGCGTGTCGACAGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACTAGAATACACAAAAAGATAGCTAACATTCGCAAAGATAGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACGATCGTCAATAATCCTTGAGCAAAAAGACTTGGTTGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACATAAGATTTGAAAATCATAACCACTTGTTCTATTTAGTGATCAACGCCTAACGGCATCTAAGGTTAGTACACTTAGTAATGCTATAAGTTGAAGCAGCAGCGTCAATTGGTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC

>NC_019748|6|3|3071472-3072157|CRT
ACAAAAAATTAACATCAACATCTAAGGTTAGTACAC	CCTGACGCGATCTCTTTCAAATTCTAAGTTATAGG
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	GAGCAACAGGTTCCACCATGACCCATTCATTCGTGT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CGGTTAACTAGCTCTGCCTCCGAATCTTTCTTTGC
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	AAGTCACCCTTCCCGATTCCCCGCAAAAAACTGATCCA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CTAGCTAGCTTTAGATTACTTTGGTGCGTGTCGACA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	TAGAATACACAAAAAGATAGCTAACATTCGCAAAGATA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	GATCGTCAATAATCCTTGAGCAAAAAGACTTGGTT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	ATAAGATTTGAAAATCATAACCACTTGTTCTATTTA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	TTAGTAATGCTATAAGTTGAAGCAGCAGCGTCAATTG
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC

>NC_019748|6|4|3071543-3072157|PILER-CR
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	GAGCAACAGGTTCCACCATGACCCATTCATTCGTGT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CGGTTAACTAGCTCTGCCTCCGAATCTTTCTTTGC
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	AAGTCACCCTTCCCGATTCCCCGCAAAAAACTGATCCA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CTAGCTAGCTTTAGATTACTTTGGTGCGTGTCGACA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	TAGAATACACAAAAAGATAGCTAACATTCGCAAAGATA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	GATCGTCAATAATCCTTGAGCAAAAAGACTTGGTT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	ATAAGATTTGAAAATCATAACCACTTGTTCTATTTA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	TTAGTAATGCTATAAGTTGAAGCAGCAGCGTCAATTG
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC

>NC_019748|6|5|3071543-3072157|CRISPRCasFinder
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	GAGCAACAGGTTCCACCATGACCCATTCATTCGTGT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CGGTTAACTAGCTCTGCCTCCGAATCTTTCTTTGC
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	AAGTCACCCTTCCCGATTCCCCGCAAAAAACTGATCCA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	CTAGCTAGCTTTAGATTACTTTGGTGCGTGTCGACA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	TAGAATACACAAAAAGATAGCTAACATTCGCAAAGATA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	GATCGTCAATAATCCTTGAGCAAAAAGACTTGGTT
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	ATAAGATTTGAAAATCATAACCACTTGTTCTATTTA
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC	TTAGTAATGCTATAAGTTGAAGCAGCAGCGTCAATTG
GTGATCAACGCCTAACGGCATCTAAGGTTAGTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015193897.1\|3080952_3081615_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_019748.1\|WP_015193890.1\|3071103_3071331_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193892.1\|3072712_3074371_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NC_019748.1\|WP_015193888.1\|3067340_3069860_-\|GAF-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_019748.1\|WP_015193896.1\|3078670_3080953_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NC_019748.1\|WP_015193894.1\|3076296_3077157_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_019748.1\|WP_015193883.1\|3058476_3062523_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|368641
NC_019748.1\|WP_015193893.1\|3075658_3076297_-\|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NC_019748.1\|WP_041619416.1\|3064756_3065488_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NC_019748.1\|WP_150109153.1\|3081618_3081933_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_019748.1\|WP_015193887.1\|3065498_3067304_-\|GGDEF-domain-containing-response-regulator	unknown	unknown	gnl\|CDD\|238923
NC_019748.1\|WP_071882388.1\|3070441_3070876_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193881.1\|3055571_3057701_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_019748.1\|WP_015193900.1\|3082278_3083253_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019748.1\|WP_015193885.1\|3064192_3064558_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015193899.1\|3081955_3082261_-\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|224583
NC_019748.1\|WP_015193895.1\|3077189_3078665_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NC_019748.1\|WP_015193884.1\|3062506_3063883_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_019748.1\|WP_015193891.1\|3072410_3072704_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_019748.1\|WP_071882386.1\|3057697_3058231_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372967

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015193897.1\|3080952_3081615_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	4.1004e-86
NC_019748.1\|WP_015193893.1\|3075658_3076297_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.3456e-46
NC_019748.1\|WP_015193888.1\|3067340_3069860_-\|GAF-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.15798e-90
NC_019748.1\|WP_015193896.1\|3078670_3080953_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.68477e-38
NC_019748.1\|WP_015193894.1\|3076296_3077157_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	8.57174e-34
NC_019748.1\|WP_015193883.1\|3058476_3062523_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	9.52238e-21
NC_019748.1\|WP_015193887.1\|3065498_3067304_-\|GGDEF-domain-containing-response-regulator	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.71709e-108
NC_019748.1\|WP_041619416.1\|3064756_3065488_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.25682e-105
NC_019748.1\|WP_015193899.1\|3081955_3082261_-\|nucleotidyltransferase	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	6.77201e-26
NC_019748.1\|WP_015193892.1\|3072712_3074371_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NC_019748.1\|WP_015193900.1\|3082278_3083253_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.23906e-40
NC_019748.1\|WP_150109153.1\|3081618_3081933_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	6.54619e-29
NC_019748.1\|WP_071882386.1\|3057697_3058231_-\|hypothetical-protein	gnl\|CDD\|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	2.91122e-13
NC_019748.1\|WP_015193895.1\|3077189_3078665_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	1.99691e-33
NC_019748.1\|WP_015193884.1\|3062506_3063883_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.59451e-10
NC_019748.1\|WP_015193891.1\|3072410_3072704_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.00662e-17
NC_019748.1\|WP_015193881.1\|3055571_3057701_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	4.58422e-12

>NC_019748.1|WP_015193890.1|3071103_3071331_-|hypothetical-protein
MANQPLNDAQKNNQSEPTNESNKSMIEQAINPPELINQPNFPKNPEELISNPGVAPQMLDDRRDLRGDLTRDEES
>NC_019748.1|WP_071882388.1|3070441_3070876_+|hypothetical-protein
MTREPDRLNEDNLYSSLDESEFAPSYGTGLKGEPTDHAGRKVHDLHSPRFDEADSILTGGDLDANYEEADAVGDEAVGGTVATPDQDIVDNLGAAVGLEMRDRDLWKRTPRSSLRTNQILEHRDEDRWETDPQSSEDYEERQDD
>NC_019748.1|WP_015193888.1|3067340_3069860_-|GAF-domain-containing-hybrid-sensor-histidine-kinase/response-regulator
MGKLLINLISPKSYIPHGHCYLWQTPLVGLHLVSDFLIAIAYFSIPVMLLYFVFKRSDVPFQKFFIMFGAFIILCGTGHLIEIWTLWHPAYWLAGVEKAMNALVSCYTAAEMATLLPRFLSLKTPEQLEIVNGELQTEIVERQKAEAELRSINEKLEIRVQERTTELQQSGEHKQAITRILQKMRQTLDLQTIFSDTTEEIRRAINCDRVLVYQFKSDWSGELIAESVAEGWNQVISQQQENTTLTSIAIAQENCAIKTLKDTYLQDSQGGIFVQKNSYRAVNNIYESGFNQCYLKLLEQLQAKAYLVVPIFYNDYLWGLLFAYQLSAPRQWQPGIIQIMIQVGTQLGVAVQQAELLARTQQQAQELRLAKNEAERANRAKSEFLANMSHELRTPLNAILGYAQLMQRASNLSQEHQEYINIIDSSGEHLLSLINDVLEMSKIEAGQTFLNETSFDLYNLLIELEDLLKLKAQYKQLQLSFNLHSDVPQYIKTDRNKLRQVLINILGNAIKFTEQGQVKLKVSIQEQMLYFSVEDTGPGISPEEIENIFVAFKQAQAGWQSKEGTGLGLSISRVFVELMGGEITINSQVGQGTTFTFTIPLITSAPVNPETSLRKSQIAIALAPDQPEFRILVVEDKPTNRNLMVKILSSIGFQVREAANGQEAIALWESWEPHLIWMDMQMPVMNGLEASKRIKSSLRGQATVIIALTASVFEEQRQKILAFGCDDFVRKPFRHGELFEKMAQYLGVRYIYKDNNQSHSQSPNNSSAHLTLNSDSFKTMSPEWLEEVFQRASQGDDLQLLQLIKLIPAEQQDLAEALTNLIENFKFDEIINLTQLSNR
>NC_019748.1|WP_015193887.1|3065498_3067304_-|GGDEF-domain-containing-response-regulator
MSEKIPSLNQADQSLPKDILIVDDTLENLRLLSTMLTEQGYTVRKATNGQMALTAVQALPPDLILLDIMMPDMSGYEVCQKLKANPTTTTLPIIFLSALDDVLDKVKAFQIGGVDYITKPFQIEEVLVRVHNQLALKAAQRKIVQLNNELEERVKQRTQQLLSANERLRQMAIYDDLTGLFNRSEFMEQLEQSLYRTKIDSAYQFALLFLDCDRFKVVNDSLGHLVGDALLKKIAHQLQNIVSVKDTLARLGGDEFAILLSGISELNQAIETAKQIISLLKQPFYCLDYEIFINVSIGIVLINPDYQQPEHILRDADTAMYRAKDLGRGQYQVFTPTMYYAAHQLLKIETDLHRAIKQKELLVYYQPIVDLAQGKIVGFEALVRWLHPQHGLMFPDSFLPVAEETGLICSIGSLVIEQACDQLSQWQQQGFTHLNIYINLAVQQLSQSSLVEEIDRILAKTKLDSDSIKLEITESSMMQNLQSTKLLLRQLQERGIKLSIDDFGTGYSSLSQLQTFPVNTLKIDRSFIQNLDGTPDNLGLVPVILSIAHVMKLNVVAEGIETKQQLTQLRELGCHFGQGFLFAKPLNAEEATKLIAQNPHW
>NC_019748.1|WP_041619416.1|3064756_3065488_+|DNA-repair-protein-RadC
MTYNLRIADIPASERPRERLVSLGVKSLTTAELLAILLSTGQGKGKLSAIGLGQHILQQLSQHRRDPLDVLREVNPQELMKIPGIGLAKAATIVAAVELGKRTFQFRPNQRALIDSPVAAAAALSHDLMWQHQERFAVLMLDVKNCLIGTQVITIGTATETLVHPREIFRETIRQSATKLIVAHNHPSGNLEPSQADLELTEQLLQGGSYLDIPLLDHLILGNGNHQSLRQITDLWTRYPQGD
>NC_019748.1|WP_015193885.1|3064192_3064558_+|hypothetical-protein
MAKNDYFLEPDDAQTFGNIEFMRKKIKVKRSFPKTIRNQNGFKIETEISSVNDRTPASDGYKSIPDYLKPETNSNNGINPSSAQSQTNVNNGAGFTSPEERRKIDTNMDMFRNMARSIKKR
>NC_019748.1|WP_015193884.1|3062506_3063883_-|tetratricopeptide-repeat-protein
MTLNSENNLEEYNLLSIGQRGVGKTVFLVGSYLEINNAYRQNKRQKFCIQSPQTQALDNLKGVIDYVKSTSLYPPPTLKISQFPFILQRHNIWGKQNICRFNWWDLPGEFCELSHPDFQQIVMNSHSCCLFINAYELINNNNYLVRLEPIIKQGIAIASVIKQHNLKYNFALIFTQCDRELKERTSRVETGLFNSSYSALQKQNQLGFRQIQIEEKIQPLIERLDKLAVNYKRFYSAIPIEGEAGNYSLQPIGTAAPLLWLTSQLVGSNSPQLAQNLENSQKLEFNSRYTPKKSFNYVILLILALVSSLSASAVLAYVFNWFRPNPQLTSITNQSNQLSPEDFDSLVNRANQNIQQGNLEGALPIVEQIVQKQPNNLNWQLNLAKIYELKHKPTQAEVVYDRILQQESNNLSALIGKAVLRQQQGDSNTAKNLLQLAEQSAPTVELKDKVRAIANSLF
>NC_019748.1|WP_015193883.1|3058476_3062523_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MKLLAWQTIVFSSLSVSLFLALSPAQAQITPDNTVDTQVNQTNNVWQIDGGQTRAGNLFHSFENFSLPTNQTAFFNNSAQITNIISRVTGGALSSIDGLIKANGVANLILINPNGIQFGANARLDIGGSFMGSTASSVKFADGTFFSANELQTPPLLTVSVPVGLQWGQGNGAIKVTGEGHNLSEASVGFSPFIRGEVNGLEVKPNQTLALLGNGITLEGGTLTAEGGKIELGSVANGLVNFNFSDQGLTFSYENVANFANLEMRSLALVDTSGTGSGTINLQGKNISLTDGSVALILNEGEQPAGQLTAEATESITISGTNLDGEIGSGLYTEAISSGKGADIIIKTGQLSLQTGGAIFADTFSSGAGGNVRIDASNSIAINGFSSINPNTFSIITSTTFGSGDAGDVTISTQRLTAFDGGNLTSTTGGLQGTGSGGNVLVNASELVELVGVTPGVFTPSQITAGTGGTGNAGTVTINTQKLVLRDGGRIDASTLASGNAGSVTVNASDAIEVSGTVPNSLNPSLIISSANLVDKPLRELLQLPDAPSGNSGDVTLNTPKLNITDGAQVTVRNDTVGNAGTLRVNADNIFLSNQGSITATTKDGIGGNIELEAKTVQLNNGLINASVLGSGGGGTIKIKASELVDVFGSGNQDLRENIIFPIIQGTVDQINPTQGIIAVANSNGKPGSISIDTNRFNVINGGLVVSSTLGSQPAGNIDIQAKQVDVATSLLVASTFGSGNAGNITIDTEKLNISDGGEFLVTTFASGNAGNLTVRAKDSVELVGRSPGDGLFASGLVASSEAQPVPAEGNSGNLSITTSQLTIKDGATASINSLGFGNGGTLKINADSVVLENQGTLQATTTFGQGGNIQINADTVLINQGLINGSTFAQGRGGNIEIKASDSLQIIGSGLDFLQENFISTQSINLELLQNIDLVTVLQGILAGTAGEGDAGNITITTQQLQLNQGGLIGTATIGSGNAGSVFINTESLLADGGIISASTLATGTSGDVTVNTNNLTLRNGGQIVSSTLANGDAGNLTINADEFVELSGSAFNGNFPSALSAGGQPLATATGNGGNLTITTPQLKIEDGALVSVSSIGSGNAGTLSIKANSLFLDNQSAVSASTASGTGGDILLTIADEIQLRNTSLISAQAGGIGNGGNISIDSGAIALLENSGIEADANQGMGGNIQLDTLGLFVCQTCRISASSNLGVDGIIDIITPAGEANLEIVDLPLEFNQVEEVVELSCQPNKNQIGSQFVITGRNGLPPRPSDPLSSPALTDFDNNYQADNLNHSQPASNSPLPPPALGWYVNSQGVVVLSANPSDHNPGYSGLNSPNCQSVGNSKKDY
>NC_019748.1|WP_071882386.1|3057697_3058231_-|hypothetical-protein
MRSRTKRAKLSLLANLCATPTLALISLALAAVPSKATNVEIKCSTQEQIPTVVAHNSQQEVAILQFLPQYFAPQNALTNCQHTAQTLQNKLQQNHLSYLTSEVVDQQSVVCTVERRGKGCTSPQAEVLFSLATKTAPNQVLYELLGKQFKSAEPFNPRTVSRIYTKIDRSWWDFWRF
>NC_019748.1|WP_015193881.1|3055571_3057701_+|tetratricopeptide-repeat-protein
MAQTQIIKPLGFVLQQAGLISPEQVRIALRTQNQLPERKIGEILAIKGWIKPETAYFFAEKWPKILLKSQKLPIGQYFKAAALLNETQIDNILQKQQKTGQKFGAIAVVEGFISQQTLDFFLEQLELAKLLKQENFNFSITNNPRDYIPYIKDYLLRNKNCEPTTLLKLYRQIWHQGEVLASGSNEEIELINSGLIVRKGNKIKIAQSVYKSVLNLNWIEQELVRLQPYGQIRLKLFGLESKASLPYKVLTEVNYWTSKQPFLTQKLYQLIKERESFIPKGKETVIIEELVQNHIIENWQQQIAGSHLQEISDRILNNQHCSPVALLKLYKKVWQQREVSVNNSPEQNELIQIGLLKQEQGKVTVANRIYQTVFNQGWIESQLALLNPSPTNNSAITIVPKTQSAKTKRDYSKISLAFLSLLVLGSLCLFGFNILAKNREAKMFEQANNLLQKQEYQKALAIYNQVLKTNGNYYQAWTNRGYALAGLKQYDKMLQSCVSATVIQPQADYAWNCQGEALHNLKQYQQSLVAFDKAIAINPKEAIFLINKSDSLNKLQQEQAALDTINQAIEILENSQESVENSQIAGNLKVAFYYKGQTLLRQQQYQEALQAYQQALQYDPNYLPAQWGKGIALKKLKRYSEATSEFNQILQRLDLSATQRATTWFYLGLNLCDAMNLSEAIEAFQTAIELQPNYEAAQTAQARCQAKLN
>NC_019748.1|WP_015193891.1|3072410_3072704_-|CRISPR-associated-endonuclease-Cas2
MAEQKNWYLVCYDIRCPKRWRKAYKLLEGYGDRLQYSIFRCWLSQRDREKMRWQLEKILTLEDDLILIRLSHQCVKSLPAYNRPNTWLINNEGFRVL
>NC_019748.1|WP_015193892.1|3072712_3074371_-|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MQLLPIPAETETIRVSALHALAYCPRLYYLEEVEELYTQDAAVFAGRRLHAELEKKEDEDWEDLYLISEELGLRGRVDALRTRDGQTIPYEHKRGRCHRDENKQPQAWESDRIQILAYCYLIESALGVKVTEGRIRYHADNVLVHIPFDDEGKKAVKDAIALARQIRTSIHRPPVTENERLCVRCSLSPVCLPEEARLVHNQEWEPLRLFPQDDEREILHILEPGTKVGRTGEQIKITRKDRQVEKVPAQQVGQLVLHSFSQISTQALHFCADRGIGIHFVSGGGRYIGSFDNRQENIQRRIRQYEALNNPEFRLSLAKKLVNCRGQGQRKFLMRGRRIKKLKSMKLERNIKQMQAIIAQIPQINSIESLLGIEGKLAALYFGALPCLLSSDVPPQMRFDGRNRRPPKDRFNALLGFGYSLLIKDVMNAILTVGLEPALGFYHQPRSVAAPLALDLMEIFRVILVDMPIVASINRQQWEINDDFEIRGEQVWLSETGRRKLVEIYEQRKQETWKHPVTKYSLTYRRLLELEVRLLEKEWMGEGGLFGQLILR
>NC_019748.1|WP_015193893.1|3075658_3076297_-|CRISPR-associated-protein-Cas5
MSNNSLLYLECPCTSFPRSFARDYKETYCYPPFSTIYGFLLSLVGEEDLTAHLGVKLAMGIIGDKPPISRIVRKQRHHKFSKTHMGTYPPSQFSKPNFQELLTDLKVVVKLDSSEESAKIKLDERVAIALISPEQITRFGGISLGESWALINGIRPYREEDGKIDWFIKDCRGLISLPVWINRQNQRGTFQRFSLGEFNPNCWVEIQASRSS
>NC_019748.1|WP_015193894.1|3076296_3077157_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MTQHIFVTVVTPTAVAANNRGEGDGSTLSTLQKITKGNDQYTTVSADAIRWGYRECLQNSQPDRVNRTFDAEADVYNIKDEKYNPKTYIDDDLFGFMDAKKDKDNKNATTKRRGVLEVSRAISLDPYWGDITFGSKGGEKGKTSIHNTEVHCTAYQYTLALTPSSLKDSERAKLLLDAIPAIKHVGGNHARFLYEFRPESIVIRVTNDPSPWIINCFERVGDSVGCSRLVRLVDVKDVLASELIVAGEIADTPYGEQLKGLKVKVCRGIKEAIVEAKKLLKTGVTA
>NC_019748.1|WP_015193895.1|3077189_3078665_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MTELTLSIFDPNTLLPHRAGIAGLALALSVINPNDVPINWDVTEDAVNLSWSCSDKEAVLGLLQQTYRLQDGYLDVPALNLDQQGKYIFSEGVTTTFLQHGKQRQQNKQPVTLTFLIDEGQPEISRSFRLVEDCYYTRDFKEAFNAKGKFKPEIPVKGHHLPGLVECFAHGAYQESPEGFLALVFLPLACSYYQLSGYRSAVVIPEVKNISKWVRRRKNYSGSTYRDFRSSSSGESGLRFLLQEKLIEDNKQWRVDYCEVYQLGKQQWDGSQSYLKQAVYRVRVDDEILDLYDSAFQFFKPQVRTNDKGETWLAISKVLPWLCDNLIASKPWYLGFYEWKKQNELYEKKGLVSMSQYLDALEQTFFDAVQGAFSSYLREQIVQAQKQGREPDYPQVTNKVINRLQRPSTQQDFAKTMVDFLSRYRSKATRGVGGEIYQWLHKDNQWKQARDLALLAIASYTGKGKDGKSEIPEEVLDESISEAEEGFEMSI
>NC_019748.1|WP_015193896.1|3078670_3080953_-|CRISPR-associated-helicase/endonuclease-Cas3
MKQAPVLKPDLLLAKSFEPGKWKGSYSLVGHTADVVNAVSTLVDVLGDRLISQFGLQCNLSELKSTACLAAYLHDWGKANEHFQGVVRANIKDAHPKRFLPDHPQIIRHEVASVLLAWEFREWLEQGEGDFLTALAAAGGHHLKLGGRSGKCTDELGEIRFSGDDRLFLYVLDVVDGKQQFNRHFKQLLKYGIKALGLPNNIKLSQKPSLSWSVKQIKEKRFQIADFLSLEWQPDSVFLAVIKSLLIAGDAIGSAIPNVNESISIKNWITENVQNTLDETKLQRVIDARLDAHQLRPFQIQLAQSKTRVTLARAGCGTGKTLGAYNWAKSFAIGRKLIFCYPTTGTSTEGFLDYVHDQLDSVLLHSRADVDLAMATTGEEEEAGEGNNESAIKLESFKAWGKESIVCTVDTVLGLLQCNRRPMYCFPAIANAAFVFDEVHCYDDRLFGALLRFLEVFKAPILLMSASFLPWQKEAITKAVGEPIEIISGSKEIEAQPRYRFNYEAQPDWSIVEHELSTGGKVLWVCNQVNTAIDVYKDAKARRLNAVLYHSRYRYQDRVQHHRDVVDGFKQDEPILAIATQVAEMSLDLSATLLVSQIADPAGLIQRLGRLNRRYCGHALDALFYPDDKVGFPYSKEELENGLRLIQSFEDEVCQRDLAQWLEDSDTFGQPDTKSVLLDGNWRTYPTSLGKEGFNITVLLEQDLATIKSLPAKEIPRYTIPIPAKNYQKWQKHKFYPIAPTEIWSYSPELGAYELKSREN
>NC_019748.1|WP_015193897.1|3080952_3081615_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MNFLEIQFALKGKTLPADHGYSLYSALKNIVLENSSQIILEEERTRDFPPEVILSTIPGVPDRQGLIYLNRSSRLRLRCPSEQASQWYRLFQNQVLDIRGHLIRLVQPRLCLLEPSQTLKARLVTFHLEKWDIHDAPVYFLESCQKSLLSLEIKGKAFIDSNCDGDLALRSLKIKNKNVMGFGVVVENLNDEDSLKLQCYGLGGRKHFGCGWFYPSSEVA
>NC_019748.1|WP_150109153.1|3081618_3081933_-|DUF86-domain-containing-protein
MLRYAQEAVDITKGKTRQDLDNERLLNLAVVRLLEIIGEAANKIPREECQKYPEIPWSAIVSMRNRLIHAYGDIDLDIVWQVVQDNLPTLIEQLKVIINNLKRS
>NC_019748.1|WP_015193899.1|3081955_3082261_-|nucleotidyltransferase
MSQQVKINIPQKQLDEFCQRNHIVKLALFGSVLRDDFKAESDIDVLVEFEPDRIPGLAFFEMEAELTQIFGRKVDLNTPGFLSPKIREKVQQEAAVQYVKS
>NC_019748.1|WP_015193900.1|3082278_3083253_-|WYL-domain-containing-protein
MSRHLERLLQIDALLRSGIRQTHRSLAVATEVSDRTIRNDLAFLRDRLLAPLEYQKERGWHYSDQNWRLPSISLSQGELFALTLGARMLEAYAGSAYVEELRSAIARLSERLPEATWIDLQQVADERILFRAGASINLDPEIWHDLERACKKSKSVWMEYFTASRNAPSERKLDPYLLHIYRGTNPYVIGYCHKRHEMRWFRIDRIRSLKVLDEKFIQDPNFDARGHLSMIFQHEVGGVPQLVEIWFDRVTAPFIRERRWHPSQELSEHGDGSLTLQMYVSGLNDIKRWVLGYGKGAVVKNPPELVEMVQREIEAMNCNYLAND

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Crispr_ID: NC_019748_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_7

3434760-3434873

Orphan

Consensus_repeat	Method
TAAACCATTTAGTCAAAGTTTGATTAATCTGCTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019748_7

>merge|NC_019748|7|3434760-3434873|CRISPRCasFinder
TAAACCATTTAGTCAAAGTTTGATTAATCTGCTCTAAAGGGATATTTTTAGTAATTTTTTGGGTCTTATTATCAAAATTAAACCATTTAGTCAAAGTTTGATTAATTTGCTCTA

>NC_019748|7|6|3434760-3434873|CRISPRCasFinder
TAAACCATTTAGTCAAAGTTTGATTAATCTGCTCTA	AAGGGATATTTTTAGTAATTTTTTGGGTCTTATTATCAAAAT
TAAACCATTTAGTCAAAGTTTGATTAATTTGCTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015194207.1\|3432217_3432430_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015194212.1\|3437928_3438663_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153254
NC_019748.1\|WP_015194205.1\|3429573_3430722_-\|transaldolase	unknown	unknown	gnl\|CDD\|235117
NC_019748.1\|WP_015194211.1\|3436543_3437377_+\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
NC_019748.1\|WP_015194213.1\|3438775_3440734_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|237756
NC_019748.1\|WP_015194217.1\|3443859_3444441_-\|phycocyanin	unknown	unknown	gnl\|CDD\|381268
NC_019748.1\|WP_041620058.1\|3442372_3443056_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NC_019748.1\|WP_015194219.1\|3445365_3445908_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|381208
NC_019748.1\|WP_015194218.1\|3444562_3445219_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_019748.1\|WP_015194216.1\|3443079_3443676_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NC_019748.1\|WP_015194206.1\|3430774_3431845_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NC_019748.1\|WP_015194200.1\|3424618_3425911_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|272970
NC_019748.1\|WP_015194210.1\|3435065_3436298_-\|methionine-gamma-lyase-family-protein	unknown	unknown	gnl\|CDD\|311036
NC_019748.1\|WP_015194214.1\|3440730_3441879_-\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|99744
NC_019748.1\|WP_015194199.1\|3423655_3424450_-\|FtsQ-type-POTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224505
NC_019748.1\|WP_015194202.1\|3426179_3426296_-\|photosystem-II-reaction-center-protein-I	unknown	unknown	gnl\|CDD\|179459
NC_019748.1\|WP_015194201.1\|3425911_3426091_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015194203.1\|3426507_3427866_-\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	unknown	unknown	gnl\|CDD\|225963
NC_019748.1\|WP_015194208.1\|3432481_3433603_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274465
NC_019748.1\|WP_015194204.1\|3427969_3429499_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015194205.1\|3429573_3430722_-\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	0
NC_019748.1\|WP_015194212.1\|3437928_3438663_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153254	cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.	1.33106e-33
NC_019748.1\|WP_015194211.1\|3436543_3437377_+\|acyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	4.30165e-114
NC_019748.1\|WP_015194213.1\|3438775_3440734_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|237756	PRK14559, PRK14559, serine/threonine phosphatase.	4.6614e-67
NC_019748.1\|WP_015194217.1\|3443859_3444441_-\|phycocyanin	gnl\|CDD\|381268	cd12130, Apl, Allophycocyanin-like globins. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC). This subfamily contains allophycocyanin-like proteins (Apls), which have conserved the residues critical for chromophore interactions, but may not maintain the proper alpha-beta subunit interactions and tertiary structure of phycobiliproteins. Indeed AplA isolated from Fremyella diplosiphon was not detected in phycobilisomes. As the genes encoding Apls cluster with light-responsive regulatory components, Apls may have photoresponsive regulatory role(s).	4.40589e-78
NC_019748.1\|WP_041620058.1\|3442372_3443056_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	1.27584e-42
NC_019748.1\|WP_015194219.1\|3445365_3445908_+\|phycobiliprotein-lyase	gnl\|CDD\|381208	cd19433, lipocalin_CpcS-CpeS, CpcS/CpeS phycobiliprotein lyase family. Phycobilin lyases covalently attach a chromophore to the Cys residue(s) of cyanobacterial phycobiliproteins. They include Synechococcus sp. PCC 7002 phycocyanobilin lyase CpcS which attaches a phycocyanobilin chromophore to C-phycocyanain beta subunit and to allophycocyanin alpha and beta subunits, Synechococcus sp. PCC 7002 phycocyanobilin lyase subunit CpcU which forms a heterodimer with CpcS-I to attach phycocyanobilin to beta-phycocyanin and to allophycocyanin subunits, and Prochlorococcus marinus phycoerythrobilin lyase CpeS which attaches 3Z-phycoerythrobilin to phycoerythrin. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	1.6296e-58
NC_019748.1\|WP_015194218.1\|3444562_3445219_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	2.00883e-13
NC_019748.1\|WP_015194216.1\|3443079_3443676_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.04305e-33
NC_019748.1\|WP_015194206.1\|3430774_3431845_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NC_019748.1\|WP_015194200.1\|3424618_3425911_+\|S41-family-peptidase	gnl\|CDD\|272970	TIGR00225, Tail-specific_protease, C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair].	8.42489e-146
NC_019748.1\|WP_015194210.1\|3435065_3436298_-\|methionine-gamma-lyase-family-protein	gnl\|CDD\|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NC_019748.1\|WP_015194214.1\|3440730_3441879_-\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|99744	cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.	5.29155e-172
NC_019748.1\|WP_015194199.1\|3423655_3424450_-\|FtsQ-type-POTRA-domain-containing-protein	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	2.54614e-22
NC_019748.1\|WP_015194202.1\|3426179_3426296_-\|photosystem-II-reaction-center-protein-I	gnl\|CDD\|179459	PRK02655, psbI, photosystem II reaction center protein I.	2.16386e-15
NC_019748.1\|WP_015194203.1\|3426507_3427866_-\|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA	gnl\|CDD\|225963	COG3429, COG3429, Glucose-6-P dehydrogenase subunit [Carbohydrate transport and metabolism].	7.15142e-109
NC_019748.1\|WP_015194208.1\|3432481_3433603_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274465	TIGR03169, selenide_water_dikinase_putative, pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.	0
NC_019748.1\|WP_015194204.1\|3427969_3429499_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0

>NC_019748.1|WP_015194208.1|3432481_3433603_-|FAD-dependent-oxidoreductase
MTQNLVLIGGGHSHAIALKLFEQNPISGVKLTLISDVKQTPYSGMLPGHVAGFYSYQETHINLQHLSELAEADLIIDQAVGLDLDQKQVICLENPPIKFDYLSIDIGSTPQTNNILGAKKYVIPAKPVPQFLQAWEELLTTHPNNSISLAIVGGGAGGVELALNMQARLLKEQNNQTTIHLFHREEKLLSSHNDWVSNRLKKILIARGIKLHLQENVKEVLAHQIICDSGLVVDCNYIFWVTQASAPTWIKNSGLTTDQKGFILVKDTLQSVSHPHIFATGDVATMQNYQRPKAGVFAVRQGRPLFENWRRIILKRPLKTYTPQKNYLALIGTGDKNAIASWGLIGWQSPLLWYLKDYIDRKFMNRFLETRKR
>NC_019748.1|WP_015194207.1|3432217_3432430_-|hypothetical-protein
MFLSELSPVIQELLKQPLAFTSGFCSGLLRLDLNDEPLASWLNKQGFSNFDSNNSNHKSNQDQPQSITIE
>NC_019748.1|WP_015194206.1|3430774_3431845_-|class-1-fructose-bisphosphatase
MVNPEQIIIPEYSLDRDCTTLSRHVLQQFSTFTAAEAQDISAIMNRIALAAKLISRRLSRAGLMAGALGFTGETNVQGESVKKMDVYANEVFISVFKQSGLVCRLASEEMEQPYYIPENCPIGRYTLLYDPIDGSSNVDINLNVGSIFAIRQQEGDDFDPQAKDLLQHGDKQIAAGYILYGPSTILVYSLGKGVHSFILDPSLGEFILAEENITIPQHGPVYSVNEGNYWQWEESIREYIRYVHRHDGYTARYSGALVGDFHRILMQGGVFLYPGTNKNPEGKLRLLYESAPLAFLMEKANGKASTGTERLLDIVPKKLHARTPLFIGSKEDVELVESFIADWMRRKSEGISLVSS
>NC_019748.1|WP_015194205.1|3429573_3430722_-|transaldolase
MVATNRILEIENQYGQSIWMDNLNRASIESGELKELIEKKGISGITSNPAIFEKAIAGNQVYDADIEAGIKEGKSVLDIYENLVFTDIRNACDILLPVYEKSNGLDGYVSIEVTPTIAKDTEKTIAEARRYFATINRPNVMIKIPGTPEGLPAVEQAISEGINVNVTLLFSVDSYIETAWAYIRGLEKRSAAGEDISKIASVASFFLSRIDSNIDDRLDEKLKGVDRLEKKAKLQELKGKVAIANAKIAYQKYKEIFGGERWQALAAKGAKVQRLLWASTSTKNPEYSDVMYIDELVGMDTVNTLPPATIDACADHCDPANRIESNVDQAYQVIESLADPDIDINLSEVMDELLDDGIDKFIKPFESLISSLEDKVKHLAAV
>NC_019748.1|WP_015194204.1|3427969_3429499_-|glucose-6-phosphate-dehydrogenase
MVTILENPLRVGLQQERSPEPLILVIFGASGDLTQRKLIPAIYQSKKERRLPSEITVVGVARRDWSHEYFREHLRQGVEEFGDGIGSEELWNEFAQGLYYCSGNMDQQESYEKLKAFCAELDGKRGTRGNRVFYLSVSPNFFKPALKHLGATGMLADPIKHRLVIEKPFGKDLSTAKSLNRAVQKVCKEEQIYRIDHYLGKETVQNILVFRFGNAIFEPLWNRQFVDHVQITVAETVGVEDRAGYYESSGALRDMVQNHLLQLFAITAMEAPNALDADSIRNEKTKVLQATHIADINNLERSAIRGQYSAGWMKGKPVKGYREEEGVNPESTTPTFVALKLMVDNWRWKGVPFYLRTGKRMPKKVTEISIHFREVPLLIFKSAAQQANPNVLSLRIQPNEGISLKFEAKMPGPDLRTRTVNMDFSYGSSFGMATADAYNRLLLDCMLGDQTLFTRADEVEEAWRVVTPILNAWEAPNDPSLIPQYEAGTWQPTEAEFLLERDGRHWRRL
>NC_019748.1|WP_015194203.1|3426507_3427866_-|glucose-6-phosphate-dehydrogenase-assembly-protein-OpcA
MATSQALVSLQAPKDVSIEEIEAELRQLWLSTSEEGAATRAATFSLVVYEPDGTQQLLASLGFYTGPIDGIAGPRTEAAVKAAEKAYGMEVTGKSSSKLRQKLEAEFASAKQQDKQTLENQTTPITYSPDSDGAGMADAIASSNPCRIITLIPILGDDQGVTAQVSAYCPINKQSTNNLVCCEYITLSGTAEALERIGGVISELMIGDLPKFIWWKATPAPEYPLFKRLVSCSDSIIFDSSSFIYPEADLIAMGELIQQGVALTDLNWKRLAPWQELTAEAFDPPERRAAIYEVDQVTVDYEKGNQSQALMFLGWLASRLSWTPTSYQLEGGDYEIRKIKFTDDQQREIVAELAGIPTADWGDIPGDLISLRLSSTNQDADCCTVLCSSATGCMRMEAGGGAQACYIQQVAPLSDQNTEELLSQQLRRWGREMLYEESMAVTHQILQLKKTD
>NC_019748.1|WP_015194202.1|3426179_3426296_-|photosystem-II-reaction-center-protein-I
MLTLKIVVYITVFFFIGLFMFGFLSSDPSRNPGRKDFE
>NC_019748.1|WP_015194201.1|3425911_3426091_-|hypothetical-protein
MNNSQQWYIIKQSDGTCQITSTTDQSDLSADQSWGPFNSQAEAVAKKIGLIRAGKCQPL
>NC_019748.1|WP_015194200.1|3424618_3425911_+|S41-family-peptidase
MAITKRGLVLGSTAIALSTVAVTGAGVHLSQSQAFIQNSPKELIDEVWQIINYQYVDTSFNAQDWQAVRQEYLGKSYKTQEDAYKAIREMLEKLGDPYTRFMDPEEFKNMQIDTSGELTGVGIQIAKDEETDQLMVISPIEDSPAFDAGILAKDIIIKIDGVSTKGMDVNEAVKLIRGKPGTPVTLTIQRDQGERDYQLVRARIEIHPVKAHVENSSIGKLGYIRLTQFSAQASQEMRDAIKKLEDQQVQGYILDLRSNPGGLLYSSIDIARMWLDEGAIVSTVDRGGEKERKWANNNALTNKPLVILVDGGSASASEILSGALQDNDRAVLVGTKTFGKGLVQSVRSLGDGSGLAVTIAKYLTPSGRDINKHGIEPDFVVEMDEAERKKLQSDRELIGTNQDLQFNKALEILTQKVQAQKGSSAQATGQ
>NC_019748.1|WP_015194199.1|3423655_3424450_-|FtsQ-type-POTRA-domain-containing-protein
MAVFSSPKLKQKLFLLRQQKKRETFHYFWRSILVSCLTGSLLWCATLPEWKIQQPKQVEIEGNFLVTEDTIHVLLSLSYPQYIWAIPTKNLSENLESITPIISAKVTRQIFPSRLRISVKERKPVALALSPGQVGFLDAQGIWIPANFYSHSATNFSLPTIKVVNFQPDYRSAWVEIYRLITLYNRVKIFEVRWQESHNLVLQTELGTVYFGSPSFRLEDKFKVLAQLKNLPDYVKGSSVAYIDLTNPDIRLIEKYPINSKISP
>NC_019748.1|WP_015194210.1|3435065_3436298_-|methionine-gamma-lyase-family-protein
MNTQALLFEAEKALLPIFSGIDTQVKQNLKKVLTSFRDRRVGVHHFASVSGYGHDDLGRDTLDKVFADVMGADEAIVRIQFVSGTHAIASALFGVLRPGDEMLAVAGAPYDTLEEVIGLRGNHHGSLAEFNIEYRQLNLTLDGNIDWKNLETAIKERTRLVLIQRSCGYSWRKSLSIDDIEKIITIVKRQNPETICFVDNCYGEFIEEREPTAVGADLMAGSLIKNPGGTIVTSGGYVAGKAELVEAAACRLTAPGIGSSGGATLDQNRLLFQGLFLAPQMVGEAVKGSHLIAYVFEQLGYPVNPLPLEPRRDVIQAIQLGSPEKLIAFCKAIQRYSPIDSYLEPIPAEMPGYESKLVMAGGTFIDGSTSEFSADGPLREPYIVFCQGGTHWTQIAIALEAAIEAVGVNF
>NC_019748.1|WP_015194211.1|3436543_3437377_+|acyl-CoA-desaturase
MTVATSDRLPPDWLNISYFGLIHLVALLAVFPQNFSWGAVGVAFLLYWLTAGIGITLGFHRLVTHRSFETPKWVEYILVFCGTLACEGGPLDWVGAHRIHHKHSDTELDPHDSNRGFWWSHIGWMMCEHPVNQEIPRYTKDIADDPFYQFCQKYLVPIQVGLGLLLYFIGGWSYVIWGIFVRLVVVFHVTWLVNSATHKFGYKSHESNDNSTNCWWVALLTFGEGWHNNHHAYQYSARHGLRWWEIDATWMTIKLLEFLGLAKNIKLPPTQTKQTQV
>NC_019748.1|WP_015194212.1|3437928_3438663_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MNQSLSSQQSLSKQQSDSINSRVSPWLARLLYPLARYLVLPVFFSQIEVIGQENIPKTEPVIVAPTHRSRWDAMIIPYAVGRLVSGRDLRFMVSANEVKGVQGWFIRRMGGFPVDTEHPGIGSVRHSIKLLHKDEMLVIFPEGGIYRENIIHPLKRGVARIALEVESEQPGSEIKILPISIKYDQPYPSWGSKVIVEIGSPLNVADYLSDSLRQSSQKLTNALKASLEKLHKVEDECRFASSEI
>NC_019748.1|WP_015194213.1|3438775_3440734_+|protein-phosphatase-2C-domain-containing-protein
MKRVSQFQVSMSNTEQTIQCSNPHCLAVNSIDNQFCHRCKTPIVKRYLWAITDAVAPEQIGQLIGDRYLALDRRVFLDTQPGKLPQTPEDVPKTIIAYLQLFSYVPHLPQVYGQLDGTDIWLLEYGTVPTDERGELLHPQLIPEITEVWEQATALQQLSWLRQIVNLWQPLASKQLVSTLLNAQLIRVNGLLIQLLELEPDQSATPQLKDLAQLWSEWNQTASEQIQEFLTQLCLRLQQGTINQPEQIIALLDRAIQLCSYTFDYSYRVVACTDSGPSRNNNEDASYPPNETLINVGNQETSLAIVCDGVGGHEGGEIAAEQTIKYLRDRVAELSLGKYDTNPPSVIQKLANFTNAANDIISNRNDNEQRQERRRMGTTLVMSLAHHHEMYLAHVGDSRIYLITPESCHQVTVDDDLASREVRLGYAVYREALQYPSAGALIQALGMRDSGSLHPNVQRLIIDRDCVFLLCTDGLSDFDRVEQYWQSTILPLLKNSDQNNLIKAAKALVKIANEKNGHDNVTVALVHCQIQPKSETEAEAISWAEVESVVGESLSWSEVAATDSSLPETESLQPTEAQFTEPLPQPRKSKKLQLLLLSLIILIGIGVLSSLFVLKLMNEAEDSKELGPTIPEREMTNPEQEITTPRSKNQNF
>NC_019748.1|WP_015194214.1|3440730_3441879_-|alanine--glyoxylate-aminotransferase-family-protein
MISTSSKSDRFRRQTAQLDLPPRVLLGPGPANVHPRVLTAMSTPPVGHLDPTFLAVMDEIQDLLRYAWQTENELTIAVSGTGSAAMEATLANVVEPEDVVLVGVKGYFGNRLVDMASRYGADVRTISKPWGQVFDLAEIKTALETHRPKILALVHAETSTGVKQPLEGLGELCQQYDCLLLVDTVTSLGGVPLSIDQSGIDLAYSCSQKGLGCPPGASPFTMSAKAIDKLNSRRTPVANWYLDMSLLSKYWGSERVYHHTAPINLYYGLREALRLVAEEGLEKRWQRHQTNAELLWQGLAELNLVCHVEQQYRLPTLTTVRIPDGVDGKAIAGKLLNEYNIEIAGGLGELGGKVWRIGLMGYNSRPENVILLLNALKQVLYF
>NC_019748.1|WP_041620058.1|3442372_3443056_+|MotA/TolQ/ExbB-proton-channel-family-protein
MNFAELIAKGGVTIWPLLFLSILSVGTILERLWFWSRVLIQEKLIINRVMEAATLNWRLVEKIAREYKNHPLANFIYSPLQLINPEPEVFHLALEAAADDELAHMRKGEKVLEAVIALSPLLGLFGTVWGLIQALSSIKLSDLGTASTSGVTLGISEALISTAAGLLVAIISLAFYRLFQAFWANQVRIFRKIGSQLELIYRQKWLEAETEGLPVDFHLETDSSLER
>NC_019748.1|WP_015194216.1|3443079_3443676_+|biopolymer-transporter-ExbD
MTIKKTNTRHPYPTHLPMRRMRLWQDESVHQETRIEILPLIDVIFCILTFFILGAVGLSRQQAINLDLPSAKTGKAQMRDMLVVSLDDLGQIYVEQQIVTKTQLSQSIKNYHQSNPEGLMVLHAAKNTTYREVVEVLDVLREVGGDRVALATLPGDSQATETPTNFDTNPNPYLPGLPGLPSNYNPYSIPNPPSPPSN
>NC_019748.1|WP_015194217.1|3443859_3444441_-|phycocyanin
MLSDRIKELIQKSRIVSFADWQKQYSNEVIEIFQQADDQGRYLSDQDIKQIQTLTPQLTTSTTQAQLLRDRVEEIVSQARAEVLAAYPQITEPGGDLYPPARAEACWRDFWHFLRCITYGIAGQSVEYTSTTGLGYMEQLYQELKVPLEAMVLGLEKLKYYSLQQFEEQEKIQLAPYFEHLINKMKGFSLTAA
>NC_019748.1|WP_015194218.1|3444562_3445219_+|HEAT-repeat-domain-containing-protein
MDFNLIQEYLSNSDSQKRMKAITELRNYETDIVVPLLKEKINDKEFLVRSFVAMGLGKKRNAESFAALLQMMKLDRDPNVRAEAANSLSLFGTVSIPHLVLMFEQDDHWLVRRSILAALAELDCPQELLEVCICGLHGEDQTVREACIDCLVRFANTSKQEEALAQLLALVTDQWWRTRMRVARALAKFNTPQAQEALNQLKQDEDHRVVGAVLESLI
>NC_019748.1|WP_015194219.1|3445365_3445908_+|phycobiliprotein-lyase
MTSVGMTTKTLESLSLEFFQQSAGQWQSQRRYYTLNKETEPQEVESLITIKFLEQGTPELIELAKLHQLDNLEALVGGTKVTWSSNYTGTIRKPSNGSTVFGVWENKLYRDRGFATTEPVVATYYFTNPQTMCLRTEYNGSVFEEEIKLIGQSYRTRQSIISRAGQELMIGQYLEKRLEN

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Crispr_ID: NC_019748_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_8

3529794-3529902

Orphan

Consensus_repeat	Method
CTTTAGCTTGTTTACTAGAAGATGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019748_8

>merge|NC_019748|8|3529794-3529902|CRISPRCasFinder
CTTTAGCTTGTTTACTAGAAGATGCACCTCCAACAGCTTTGAAAGGACAATTTTATCCTTTTGCCACTCCTTTAATGACTCCTTTAGCTTGTTTACTAGAAGATGCACC

>NC_019748|8|7|3529794-3529902|CRISPRCasFinder
CTTTAGCTTGTTTACTAGAAGATGCACC	TCCAACAGCTTTGAAAGGACAATTTTATCCTTTTGCCACTCCTTTAATGACTC
CTTTAGCTTGTTTACTAGAAGATGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015194279.1\|3519735_3520191_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NC_019748.1\|WP_015194294.1\|3536165_3537341_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|223515
NC_019748.1\|WP_015194289.1\|3530750_3531638_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|224938
NC_019748.1\|WP_015194280.1\|3520390_3521008_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_019748.1\|WP_015194281.1\|3521018_3521237_-\|DUF2811-domain-containing-protein	unknown	unknown	gnl\|CDD\|371302
NC_019748.1\|WP_015194296.1\|3539418_3540624_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NC_019748.1\|WP_015194287.1\|3526873_3529093_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|182633
NC_019748.1\|WP_015194295.1\|3537349_3539392_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NC_019748.1\|WP_015194290.1\|3531764_3532112_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|310261
NC_019748.1\|WP_015194284.1\|3524711_3525005_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|183845
NC_019748.1\|WP_015194282.1\|3521709_3523242_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|223141
NC_019748.1\|WP_015194285.1\|3525009_3525297_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370734
NC_019748.1\|WP_015194297.1\|3540940_3541714_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NC_019748.1\|WP_015194278.1\|3519206_3519515_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015194293.1\|3534248_3534929_-\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|224837
NC_019748.1\|WP_015194286.1\|3525451_3526795_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NC_019748.1\|WP_015194292.1\|3533834_3534185_+\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|377725
NC_019748.1\|WP_015194283.1\|3523365_3524427_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_019748.1\|WP_150109076.1\|3535058_3536169_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_019748.1\|WP_015194291.1\|3532179_3533691_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015194279.1\|3519735_3520191_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	3.27912e-51
NC_019748.1\|WP_015194294.1\|3536165_3537341_-\|glycosyltransferase	gnl\|CDD\|223515	COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].	4.88995e-23
NC_019748.1\|WP_015194289.1\|3530750_3531638_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	3.99828e-47
NC_019748.1\|WP_015194280.1\|3520390_3521008_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	7.19287e-103
NC_019748.1\|WP_015194281.1\|3521018_3521237_-\|DUF2811-domain-containing-protein	gnl\|CDD\|371302	pfam10929, DUF2811, Protein of unknown function (DUF2811). This is a bacterial family of uncharacterized proteins.	6.49419e-30
NC_019748.1\|WP_015194296.1\|3539418_3540624_-\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.07271e-36
NC_019748.1\|WP_015194287.1\|3526873_3529093_-\|cation:proton-antiporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	1.86957e-93
NC_019748.1\|WP_015194295.1\|3537349_3539392_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.01169e-135
NC_019748.1\|WP_015194290.1\|3531764_3532112_+\|hypothetical-protein	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	0.00756119
NC_019748.1\|WP_015194284.1\|3524711_3525005_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|183845	PRK13019, clpS, ATP-dependent Clp protease adapter ClpS.	7.72632e-54
NC_019748.1\|WP_015194282.1\|3521709_3523242_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|223141	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism].	1.58814e-75
NC_019748.1\|WP_015194285.1\|3525009_3525297_+\|hypothetical-protein	gnl\|CDD\|370734	pfam09876, DUF2103, Predicted metal-binding protein (DUF2103). This domain, found in various putative metal binding prokaryotic proteins, has no known function.	4.31603e-26
NC_019748.1\|WP_015194297.1\|3540940_3541714_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.42272e-131
NC_019748.1\|WP_015194293.1\|3534248_3534929_-\|phosphoribosyltransferase	gnl\|CDD\|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	2.34031e-52
NC_019748.1\|WP_015194286.1\|3525451_3526795_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.86387e-80
NC_019748.1\|WP_015194292.1\|3533834_3534185_+\|DUF1257-domain-containing-protein	gnl\|CDD\|377725	pfam06868, DUF1257, Protein of unknown function (DUF1257). This family contains hypothetical proteins of unknown function that are approximately 120 residues long. Family members include eukaryotic and bacterial proteins.	3.45444e-29
NC_019748.1\|WP_015194283.1\|3523365_3524427_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	1.55451e-150
NC_019748.1\|WP_150109076.1\|3535058_3536169_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_019748.1\|WP_015194291.1\|3532179_3533691_+\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	1.24571e-161

>NC_019748.1|WP_015194287.1|3526873_3529093_-|cation:proton-antiporter
MAAVNDFVLELTTVLGSSALGGFIANRLRQPVLLGYLISGLIIGPFGFGLVQEIENIKSLAEIGVAFLLFTLGVEFSLTELKRVKDIAINGSLLQIGLTTVVVALVSFWLGWVDQITEAVFLGAILSLSSTAVVLKTLTERGETNTVYGQVMLAILIVQDLALGLMLAVLPALNEPSNLVTALLTAILKAVIFFTAAFVAGYWIIPPVIKTIAETENSELFLLAVLALCLGVALITASLGLSIEMGAFVAGLTISEIDYADQALAKILPLRDTFASLFFASIGMLIDPQILWQNLGVILELVILIMFGKAMIVFPIIWGFGYSFRTSVLASLGLNQIGEFSFVLALVAFESGLMSRESYLLLLGTTAITLVLTPVSIKFSPRLVEKLLNLPWLSQYLRSRQQEKIITLPDTISNHVVVAGYGRVGQIIVKILRDRAIPVVVIDNSEAAIQRLRQEKIPYLFGDGDSDLVLEKAHLETATALAIALPDPASTRILLKHALAFAPQIAIVARCHTNSEIDVLTQMGAKEVIQPEFEAALAMGAEILQTLGTSRNTIDSAIDEIRTDRYLSIRPELTLTSLAQEIRKTASATHNQWLTISVNSPLIGMTLASANIRQLTGVTVMSIQRNGETIYYPQADTRLEMSDRILVVGKRKEVALFQDLLQGNLSISNIKWILLNETSLWVGKTVLQLQQQEQIKLEALRRQGKLIRLVKPETILEAEDYLLISEKRDRTNSLQTQFD
>NC_019748.1|WP_015194286.1|3525451_3526795_-|Mur-ligase-family-protein
MQLVDRVRLGLAVGVAKTVTEIVKSLRLGAASVLPGEISRRLHTRLLPLLFEQVKYGVILIVGTNGKTTTSLLLKTILEKQGYRVAHNSSGANLINGLITALLNNTDLTGKLTADYAILEVDENILPLLLKDCQPKYILGLNLFRDQLDRYGEVDTISQRWQKAISPLSKDTVIILNADDPTLSYLGQNLPQKVLFFGLNEPELYLESIPHAVDSIYCPSCGQLLDYQGVYLSHLGDYHCSNCGFNKSKTAVDSREWQQILIGVYNKYNTLAAGLLAQEIGIKTEAIFNTIKNFKAAFGRAEELNIDGKHIRILLSKNPVGMNETIRAVNEIKKTGKSSVTLLVLNDRIPDGTDVSWIWDVDTEELVKLGGTLIVSGDRVYDMALRLEYSREEINSNRNLELIIKEDLSSAITTALEHTLTEETLHILPTYSAMLEVREILVGRKIL
>NC_019748.1|WP_015194285.1|3525009_3525297_+|hypothetical-protein
MSSSSEGRLVWNHSTHLQGLIPILEKLTTCQGIKTITPGELSSVRSHCPKLKLRVSVPIRGGYKLIARYGKTVQEVFIITDLTKTELEHFISKFL
>NC_019748.1|WP_015194284.1|3524711_3525005_+|ATP-dependent-Clp-protease-adapter-ClpS
MTASPTVIKEKESKVVSKPYPNYKVIVLNDDFNTFKHVAECLMTYIPGMTSDRAWDLTNQIHFEGQAIVWVGPQEQAELYHQQLKRAGLTMAPLEEA
>NC_019748.1|WP_015194283.1|3523365_3524427_-|ABC-transporter-ATP-binding-protein
MAKLELQNLQKRYSSKVIPVKNIALAVENGEFLTLLGPSGCGKSTLLRLIAGLEQPTQGNIILGEKNLNKIPPGDRNMAMVFQSYALYPHMSAAENIATALKLRKMPAEEIQQRIAEAAQQLELTHLLDRKPGQMSGGQRQRVALARALVRNPEVFLLDEPLSNLDALLREQVRAQLKQLFKEQNKPVVYVTHDQTEAMTLSTKVAVLYDGLVQQLDPPSKIYTHPANQFVAGFVGSPQMNLLTLKCQGNTAILGDANLPLPPLATIPPQIMLGIRPEDVELAQFASDTTVTGEIYLVEQLGKENLISVQVANSNQNLRILLPIDRKWEGDTVLLNLPTTHLHWFDLATGDRI
>NC_019748.1|WP_015194282.1|3521709_3523242_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MLEQIIVSAEQMRQIEEQIFSAGMPVAALMEKAAGLCASRVQSLYPLSEIKKVGILVGPGHNGGDALVVARELHLAGYQVKICRPLSKLKDLTNTHANYAASLKIPFFEEIETLEDCELIIDGLFGFGNERSLEGKLAAIVNQLNSWSKSVVSIDLPSGIHTDTGKVLGTAVVASHTFCLGLWKRAFFQDQALAYLGKVERLDFGIPPHIVWQVIPQPAPVQQITKTLAQKLLPIPRPQVTHKYKQGHLLLICGSHRYAGGTLLTALGARSSGVGMLSIAVPESLKPILVSHLPDALTIGCPETESGAIASLPDLAQDFSNYDLIACGPGLTSEAKPIVEAVLKAECPIVLDADGLNILAQLGTLSSLGKRKATTVLTPHLGEFKRLFPDIELTDGDRITAVQTAAQQSGAIVLLKGARTAIANPNGSVWLIPESTPALARGGSGDVLTGLIGGLMAQIEAGESEFKEEVSIVATAAWWHAQAGILAAKQRTELGVDAHTLSQYLISVWQ
>NC_019748.1|WP_015194281.1|3521018_3521237_-|DUF2811-domain-containing-protein
MKAEVSILAEIPEELHRSLKNYLETHPTWDQDRVFAAALSLFLLQNSGGENNEASQNYRACARVYLETLFQQ
>NC_019748.1|WP_015194280.1|3520390_3521008_-|aminoacyl-tRNA-hydrolase
MTQEKTAKLIIPQLIVGLGNPEPKYDRTRHNIGFEAVDALADSWGLNWEKNQRFQGLIAEGLAPNRSKIRLLKPLTYMNRSGQAVRAVIDWYKIAPESVLVIYDDMDLPIGKLRMRLSGSAGGHNGMKSIISHLGTQNFPRLRIGIGKSDGNKETISHVLGKFAPTETKVVTDVLELAIKAVNFSLQEGVEKAMSLYNGCSVAIT
>NC_019748.1|WP_015194279.1|3519735_3520191_-|GatB/YqeY-domain-containing-protein
MSLKDRIGEDIKTAMKAKDKIRLETVRSIKKAILEKEVALRPQGKNSLTEEQEIELLAQQAKQRRDSIEQFQQAGREDLVTKETQELAIIETYLPKQLNEEELTTVLEEIIASVGANSPQDLGKVMGVAMKQLKGKADGKKIQEIVKNKLG
>NC_019748.1|WP_015194278.1|3519206_3519515_-|hypothetical-protein
MRITLVAKIDLDGKICPKSAFVLEKLQNSGLLAQIDCIIFADKRDRFSEGFALATQYQVAKIPFFLITYQDGITKTYTTYSQLVNEFLIQKTLNTKEVEHNN
>NC_019748.1|WP_015194289.1|3530750_3531638_+|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MVKVSHQLQHLAIATILAFFSVNLLSDNRSSANTVTRIERLEPVELYVPPPEQNTTGICSNYIQPVIDKIVERSPFDQGKWGILIQTADGTTLYSRSPDSYLIPASNLKILVTAAALQKLHPQGTIRSSSIQEWINITNLRSNNIYADVLLSYLGGSTSVRQVLTALGVDPKGYHMVDGSGLSRSNLATPRTLVTTLRAMYSSQDKDSFLASLPIAGISGTLQHRLRYTSAEGTVHAKTGTLKGVRALSGYLEHPEYGTLIFSIISNQPNSQSDPALVNAIDEIVIRLSTITSCS
>NC_019748.1|WP_015194290.1|3531764_3532112_+|hypothetical-protein
MQNKQKVTLYIPPELHRKLKIKAAIDIESMSTLVEKAIAFYLQYPDKVEEVEANNLGKTHQVHICPECDAAMVMREGKMLSLREQPGVIAEELPLEVRGQVDTSEKSHGEQLVPC
>NC_019748.1|WP_015194291.1|3532179_3533691_+|AAA-family-ATPase
MKEELNILIQAQYPLIYLLTPEEERAEQAIAKIAQANAEHRRVYVWTVTHGIVEHGQPRQVTQHNTVSPEAAIEWTIRQRDAGIYIFKDLHPFIDGPVITRWLRDAIASFKGTEKVIVLMSPVQNVPIELEKEVVVIDYPFPNLAELNQVLSAQLQKSKNRRLDTEAREKLLKAALGLTRDEAEKVYRKAQVKASRLTEEEVEIVLSEKKQLIRRNGILEYIEEDETINSVGGLEELKRWLRQRSNAFTERAREYGLPQPKGMLILGVPGCGKSLIAKTTSRLWGLPLLRLDMGRVYDGSMVGRSEANLRNALKTAESISPVLLFIDELDKAFAGGAGSGDSDGGTSSRIFGSFLTWMQEKTSPVFVMATANRVERLPGEFLRKGRFDEIFFVDLPTPEERQDIFRIHLSKRRSDISRFDLEQLAKVSDGFSGAEIEQAIIAAMYDAFAQEREFTQLDIIAAIKATLPLSRTMTEQVTALRDWARQRARPASASIAEYQRLEF
>NC_019748.1|WP_015194292.1|3533834_3534185_+|DUF1257-domain-containing-protein
MSHFSTLRTKITEAEILKNSLRDLGINVKTNADVRGYNGQRVRADIVAVLEGEYDLGWSQNSDGTFDLIADLWGVAKKHNQTELINSINQKYAVNKTLTEVKQRGLQNANVKLVLQ
>NC_019748.1|WP_015194293.1|3534248_3534929_-|phosphoribosyltransferase
MLFHDRTTAGAELAQLVYLQLLELQPNRQVIVYALPRGGIPVAIPIAKQLNCPLDVIVAKKITTPTNRELAIGAVTSEGNILWTKPELWRDANLCGLKEAVVQAQDKAQNQALEFASYRLPLDLQGKIAIIVDDGIATGMTMGVAAQYLREQQVAEIWLCAPVAPPDLIPQLELWSNRVLVLATPDPFFSVSRFYDHFEQVSLTDAVAMLETHNQQFQPTLSQKDL
>NC_019748.1|WP_150109076.1|3535058_3536169_+|peptide-chain-release-factor-2
MEISELKREIETVSLRLGKTQDYLDVPALNAKIKDLEQLAAQPEFWDNRQQAQDTLQQLNDLKSNLEQYHSWQTRLEDTKAIAELLELEEDEALATEAQHNLNQLQQELDRWELQQLLSEPYDHEGAVLTINAGAGGTDAQDWAEMLLRMYTRWAEKQGYKVHLAELSPGDEAGIKSVTLEIEGRYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPALDESAINLEIPEKDLDISTSRSGGKGGQNVNKVETAVRVVHIPTGIAVRCTQERSQLQNKEKALALLKAKLLVIAQEQRAKEIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRTEVETGDVNDVMDGNLDFLIEAYLRQENQLV
>NC_019748.1|WP_015194294.1|3536165_3537341_-|glycosyltransferase
MSKYYLVYSHQISLQPNTAHEIHDVQCADAAANLGYPTVLVYPEQQQKNFNLFNFLFPFRPQLPSKEIVEFYDIQSNLKTATLPLPKLSLPLPNKFTNPSTIICKYYFPLHIFPKTKVLHTRDWNCAKAAVQNKIPTIYESHYFQSKPLENKIVNSPYFKIAITQSELTRQSLIQAGVPESKAIWLHNGFGQSFLTRQPAEAQAWRKELLSKENQPLVVYSGALYRFKGIDLLIEVARLLPHIQFAITGGTDAQIQHYRELAQAKQVDNINFLGWILPRSRLVSLLQAADLLAHPHLLGKEADFTNPVKFFQYIASGTPLVVTEILPLLPFKSSPLIATWCPPDDPGAFAQAIEQSLRNYPYQSEGYPTNIEFARQFTWENRTAKIMSYID
>NC_019748.1|WP_015194295.1|3537349_3539392_-|ATP-binding-cassette-domain-containing-protein
MSSRKFILSIAREQPLLIVATVVFSLASAIFNGVGTALIIPILIVFLGEKNTLEFPGQPPLLNKFFALFDRFEDQEKLIVMIVVVVMTIILKNVTNFISSLIGNYSAKNLVRNMRTSGLRILLDVDLDFYSKIRIGDIVNRINGEIEKTASAIRTVIRILITVLTILTFVYLLILISWRLTLLTTVLLSLIALSNQYFVIKSKELGQILAEKSREYSRKIIEILTGIRLVKSVSNEEAEYQQIEELILAREDAQLKSQAISSIIGPINEILGIIIILFLVGLGRYLFTQQLEEFAPILLTYLVILFRLLPFIGQLNNARTQFANSIHSIDIVEDFLRKDNKPFQTRGIKPFERLIEGIQFEGVDFAYPDHEKLVLKQLSLWIPKGKTIALVGSSGAGKSTIADLLPRFYDPTAGRITIDGIDLKDYEIKSFRRNMGIVSQDTFLFNHTIRYNIAYGLEHISEEEIITAARRANAHEFILQLPQGLDTEVGDRGVMLSGGQRQRIAIARALLRNPDILILDEATSALDTVSERLVQEAIDELCRDRTTLVIAHRLSTVQKAHQIVVLDGGQVVEIGNHEELLAANKYYAHLYQMQFRDKEHKNSSLITEDISTRLSSENFNDISHQMRTNLHSMLGSLRLVIDHLVDNQEEREKLIEESYQSGLTILKRLEYFESASISSK
>NC_019748.1|WP_015194296.1|3539418_3540624_-|glycosyltransferase
MTFPAQDRKPKISIVVSDLSSSGAGRWGGAIRPFLLAQALRQLDYDVEMLGVAFGEKSSAIANSAFPIISFPCQSHSGFFQAASKLIHQINGKIIYAVKLKPSSFGLALIKKNFTGRPLILDIDDWELSWHGGDKWKYDFNPKQIARDFWQPKGQLKHPDHPLYLKWIEKLASRADVITIHNQFLQQRFGGIYLPNGKDTSLFNPAQYDSEASRAKYGLSDYKILMFPGAPRPYKGVEDVLIALEKLNRSDLRLVIVGGSPYDDYDLQLQQKWGKWIIQLPKSPVASMPEIIAAAHIIVVPQRDSPATQAQFPLKLTDGMAMAKPILASCVGDIPHILGETGYLVEPNSPEQIATTLELILNDFSTANTKGIAARKRCIKQYSIEAMAEILKPILAKFSII
>NC_019748.1|WP_015194297.1|3540940_3541714_+|hydroxyacylglutathione-hydrolase
MLIKTIPALSDNYIFLLYDLEQKIAAVVDPAEAESVLQALQKLKVELVAIFNTHHHFDHVGGNRQLIKHFPNLCVYGGKKDQGRIPGQQVFLEAGDTVEFAGRLAQIFFVPGHTRAHIAYYFPPLNQEDTGELFCGDTLFAGGCGRLFEGTPEQMVASLSQLRQLSDRTRVWCAHEYTLKNLQFALTVDSHNPDLQKRFTEVQQARRRQEATVPSNLGIEKLTNPFLRWDDSALQAATGMKQAARVFGKLRVMKDQF

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Crispr_ID: NC_019748_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019748_9

4485921-4486141

Orphan

Consensus_repeat	Method
CCAGTAAATTGCGTCTCATTATTAAAATTGCCGTTAATTCCAATTAAACCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019748_9

>merge|NC_019748|9|4485921-4486141|CRISPRCasFinder
CCGGTAAAGCTCGTCTCATCATCAAAATTGCCACTTATTCCGATTGAACCAAAGGAAGTTTCGGTATTCCAAAAAGCATTGGTACTGATAAAATTAGCTTGTTCGTCAAACTTGCTACTAACTCCGACTGAACCAAGGGAAGTTTTAGCTTGCCAAGAGGCATTACCACCAGTAAATTGCGTCTCATTATTAAAATTGCCGTTAATTCCAATTAAACCAAG

>NC_019748|9|8|4485921-4486141|CRISPRCasFinder
CCGGTAAAGCTCGTCTCATCATCAAAATTGCCACTTATTCCGATTGAACCAAA	GGAAGTTTCGGTATTCCAAAAAGCATTGGTACTGATAAAATTAGCTTGTTCGTCAAACTTGCTACTAACTCCGACTGAACCAAGGGAAGTTTTAGCTTGCCAAGAGGCATTACCA
CCAGTAAATTGCGTCTCATTATTAAAATTGCCGTTAATTCCAATTAAACCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019748.1\|WP_015195125.1\|4484604_4485051_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_019748.1\|WP_015195118.1\|4477200_4478310_-\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|273039
NC_019748.1\|WP_015195128.1\|4487000_4487876_-\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_019748.1\|WP_015195123.1\|4483136_4483934_+\|WecB/TagA/CpsF-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|377136
NC_019748.1\|WP_015195134.1\|4493793_4494330_-\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
NC_019748.1\|WP_015195116.1\|4474446_4475307_-\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015195120.1\|4479196_4480690_+\|cobyric-acid-synthase-CobQ	unknown	unknown	gnl\|CDD\|234838
NC_019748.1\|WP_013321375.1\|4494520_4494616_-\|photosystem-II-reaction-center-protein-T	unknown	unknown	gnl\|CDD\|183353
NC_019748.1\|WP_015195132.1\|4491507_4492275_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_019748.1\|WP_015195135.1\|4494844_4496377_-\|photosystem-II-chlorophyll-binding-protein-CP47	unknown	unknown	gnl\|CDD\|214350
NC_019748.1\|WP_015195121.1\|4480697_4480937_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|238126
NC_019748.1\|WP_015195117.1\|4475812_4476931_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236012
NC_019748.1\|WP_015195133.1\|4492368_4493367_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|180960
NC_019748.1\|WP_015195119.1\|4478715_4479126_+\|hypothetical-protein	unknown	unknown	unknown
NC_019748.1\|WP_015195122.1\|4481259_4482876_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|223520
NC_019748.1\|WP_015195130.1\|4488963_4489923_-\|DUF362-domain-containing-protein	unknown	unknown	gnl\|CDD\|224917
NC_019748.1\|WP_150109175.1\|4488233_4488743_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_019748.1\|WP_171815464.1\|4483919_4484630_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NC_019748.1\|WP_015195131.1\|4490177_4491431_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NC_019748.1\|WP_015195136.1\|4496667_4496994_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019748.1\|WP_015195125.1\|4484604_4485051_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	1.54354e-44
NC_019748.1\|WP_015195118.1\|4477200_4478310_-\|calcium/sodium-antiporter	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	7.52424e-86
NC_019748.1\|WP_015195128.1\|4487000_4487876_-\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.19328e-54
NC_019748.1\|WP_015195123.1\|4483136_4483934_+\|WecB/TagA/CpsF-family-glycosyltransferase	gnl\|CDD\|377136	pfam03808, Glyco_tran_WecB, Glycosyl transferase WecB/TagA/CpsF family.	6.40331e-68
NC_019748.1\|WP_015195134.1\|4493793_4494330_-\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	5.37264e-85
NC_019748.1\|WP_013321375.1\|4494520_4494616_-\|photosystem-II-reaction-center-protein-T	gnl\|CDD\|183353	PRK11875, psbT, photosystem II reaction center protein T; Reviewed.	5.95422e-10
NC_019748.1\|WP_015195120.1\|4479196_4480690_+\|cobyric-acid-synthase-CobQ	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NC_019748.1\|WP_015195132.1\|4491507_4492275_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	2.01572e-28
NC_019748.1\|WP_015195135.1\|4494844_4496377_-\|photosystem-II-chlorophyll-binding-protein-CP47	gnl\|CDD\|214350	CHL00062, psbB, photosystem II 47 kDa protein.	0
NC_019748.1\|WP_015195121.1\|4480697_4480937_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|238126	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.	2.22674e-10
NC_019748.1\|WP_015195117.1\|4475812_4476931_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236012	PRK07406, PRK07406, RNA polymerase sigma factor RpoD; Validated.	0
NC_019748.1\|WP_015195133.1\|4492368_4493367_-\|30S-ribosomal-protein-S1	gnl\|CDD\|180960	PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.	0
NC_019748.1\|WP_015195122.1\|4481259_4482876_+\|Hsp70-family-protein	gnl\|CDD\|223520	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones].	7.90243e-89
NC_019748.1\|WP_015195130.1\|4488963_4489923_-\|DUF362-domain-containing-protein	gnl\|CDD\|224917	COG2006, COG2006, Uncharacterized conserved protein [Function unknown].	5.92497e-135
NC_019748.1\|WP_150109175.1\|4488233_4488743_+\|Hsp20-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	8.18031e-34
NC_019748.1\|WP_171815464.1\|4483919_4484630_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	3.2264e-72
NC_019748.1\|WP_015195131.1\|4490177_4491431_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0

>NC_019748.1|WP_015195125.1|4484604_4485051_-|urease-accessory-protein-UreE
MIRLTECFSTEEKIEPAWTISLTAEERKRSRQKLELTPNQYIYIYLPRGTVLHDGNLLRSETGELIVRVLAKPEPVMTIRGKTTLDLIKAAYHLGNRHVALEITSDYLRISPDSVLSSLLIQLGLEVIEEIAPFQPEIGAYGHIHNYE
>NC_019748.1|WP_171815464.1|4483919_4484630_-|urease-accessory-protein-UreF
MVIFTIMNETILSLLQLTSPSLPLGAYSYSEGLESLITQGAISTADSLALWLKRELNYGAIRLEAAIMLRAYFSLKVGDVQALDDWNSWSSAAKESSELRYQSWQMGTSLLRLLRELQPQTDKKLLPIEQLVQIFGRQCNYCVAFGIGAACWQLSSENALLGYLQSWTANLISVGVRVIPFGQTKGQKLLFQLNQDIVKATTTIISLSDDDLCNCSFGLGLASMTHQHQHVRLFRS
>NC_019748.1|WP_015195123.1|4483136_4483934_+|WecB/TagA/CpsF-family-glycosyltransferase
MEQINILSVLIDNFSMAELLEKLRYGGVVFTPNVDHIIKLQKDRDFYRIYKTADYRVCDSQLLLYASKFLGTPLKEKISGSDLFPAFYWYYRNDENVKIFLLGGVTQDVVEDAHQNINDKVGCNMVIASYSPPFGFEKDEIECQKIVQMINNSGATVLAVGLGAPKQEKWIYKYKDQLHNIKLFFAIGAAIEFEAGYRQRAPKWMSMVGLEWLFRLMLEPKRLWKRYLVEDLAFFVLIMLQKLNLRPLRRMRGMSAPWSRKLAAK
>NC_019748.1|WP_015195122.1|4481259_4482876_+|Hsp70-family-protein
MSVTSIENNAYAIDFGTSNTVVARWNSAIGAAETVKLSGLSQLLANNPPLIPSLVYVKDASRGKVILGQAVRDRGLDQTNDARFFRSFKRGIGTEIQGFLPELDEQLVTFEQVGEWFLKQLIAQLQDDCQANLQSLVLTVPVDSFEAYRLWLTDICHSLSVEQIRILDEPTAAALGYGAAEQELILVVDFGGGTVDLSLVQLSRQSQATQGFILKWGQKFLGESSSQKKATARVLAKAGQNLGGTDIDHWLVDYFAATQGLTKSSLTTRLAEKLKIQLSTQQEASEVYFNDETLESYQLNLDRSGLEKILQQQQFFAQLDELMTQVLQQARRNGIEKTDINAVLLVGGTVQMPAVQNWIKQYFDQDKISCDRPFEAIATGALAIAQGIQVQDFLYHSYGIRYWNRKQNCHSWHPIIQAGQPYPMAQPVELVLGASVENQPSIELIIGEMGVNNVGLEVYFDGDRLITRSNNDQTMTVKPLNDKAGARTIARLEPLGNPGSDRVKISFWVDQERYLRLSVEDLLTQTMLLNNQIVAELT
>NC_019748.1|WP_015195121.1|4480697_4480937_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTVTIRFLPDNITVKAETGEPILQVAERAGVFIPTGCLMGSCHACEVELNDGTAICACISSVPIGTKELTINLYSDPLW
>NC_019748.1|WP_015195120.1|4479196_4480690_+|cobyric-acid-synthase-CobQ
MKAIMVVGTTSHAGKSFLTAALCRILVRQGWRVAPFKGQNMALNAYVTPTGGEIGYAQAVQAWAAGVIPRIEMNPILLKPQGNMTSQVIIKGNAVGVVKATEYYEKYFDLGWEVIQESLYRLSIEFDLLVCEGAGSPAEINLKHRDLTNMRIAKHLNASTILVVDIERGGAFAHVVGTLELLEPEERALVKGVVINKFRGNKELLTSGIEWLQQRTGVPVLGVIPWHDQIFPAEDSLDLLERRIHQLNRELNIHVIRLPRIANFTDFDPLESEPTVSIKYIGLKDSLGHPDAVIIPGSKTTIADLLAMKKSGMAEQIQEYAAAGGTVLGICGGYQILGERIIDTEGLEGESGEFQGLGLLPVHTVVTANKIARQRQVISKFPQAGLPVDGYEIHQGRTRLLNYKNRDLTSEYRPVFDDTGLGLVDRSLSVWGCYLHGIFDNGPWRRSWLNHLRKQRGMASLPTGISNYREQREAVLNDLTNLVEANINLKPILPSHY
>NC_019748.1|WP_015195119.1|4478715_4479126_+|hypothetical-protein
MSFLPARAKQSVSYSSLTITRAEIALCCSSFKLSLFTAMLNHGVPLPTIAESSGLQNNYTKKALSENQAEAQLIWLIKVGVLRREVDGQGLTDSFRLTPLGRQIVTKWEKQGNSLPNPTMSERIINLFNRWSRLSL
>NC_019748.1|WP_015195118.1|4477200_4478310_-|calcium/sodium-antiporter
MTLITFLILFGGLVLLVIGAELLVKGASNLAGILGIPPLIIGLTIVAYGTSSPEMAVSVMSSWAGQADLAVGNVVGSNIFNVLLILGLSALVTPLIVTRQLIRSDVPIMIGVSILLLMFGLDGKISRVDGIIFFVGGVIYTLSLVYQSRQPNNNSEQDEFTREYGYTGERSRIIWFKDLVFIVGGLGLLVLGSRWLVDSATTIARALGVSDLLIGLTIVSAGTSLPELATSVIASLRGERDIAVGNVLGSNIFNILAVLGLAGIVAPNGLNVSESIIEFDVPVAIAVAFACLPIFYSGNQINRWEGLLFVFYYLAYVGYLILNAINHDSLPVYTTIMLFFVIPLTVITLVAAMLQERQARRKKKMDRHL
>NC_019748.1|WP_015195117.1|4475812_4476931_+|RNA-polymerase-sigma-factor-RpoD
MTQANQVLATIEEPKLGWELLIDEDVSDNELDVELEDAETVKTALTAARRGERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYIR
>NC_019748.1|WP_015195116.1|4474446_4475307_-|hypothetical-protein
MNKFSILIAITQCLAFGAIAIASSWLSSCSPSTNLNKNETEAVAAETGMLTLVANGEDFVRQGFVSKDGWQINFNHLYVTLADVKAYVTEAPFDPETKQEIKPQEEVVLLEGNKTVDLAEGEAEAEPIVVNQTEAPVGTYNASSWKLVPAQDAPASGQTIYMDGIAEKDGQTINFLIGVNYPVEYVCGEFVGEERKGIVQPDATGELETTFHFDHLFGDQSASATDVLNQEALGFQPLAELATAGKLEVDQSQLQERLSPDNYQKWQNAIAGLAHVGEGHCAIKSQ
>NC_019748.1|WP_015195128.1|4487000_4487876_-|dienelactone-hydrolase-family-protein
MINSRFFNWKFLITGLLSLVFLVGINLYNSSRDQALSLAAVHQNDSPIPTALAQAEPATPVITEQVQYATVNGQKITGYLARPQNAVDGLPGVIAIHEWWGLNDNIEAVTRRLAGEGYHVLAVDLYNGQVAQSPERAKELMTTVSQNPTLAQENLQQAYTYLTEKLQAPKVGSIGWCLGGSWSLQTALLFPEALDATVIYYGGQIGEATKEQLSTLTMPILGIFGAEDESIPLATVQKFEATLKELGKQADIQVYENAGHAFANPSGDRYVPEAAEKAWTETISFLAQNLQ
>NC_019748.1|WP_150109175.1|4488233_4488743_+|Hsp20-family-protein
MFEVASSERIPLLGQHSLAPYVGVGSDRLPPTRGRSSISAVRDALTPNSWGEFSNLAKFPAAELTDTEDAIHLKLEVPGMSAKDLDIQVTVDHVSISGERKSETKSEENGKVHSEFRYGKFSRVIPLPARIQNSNVTAEYKNGILNLTLPKAEEEKNKVVKVNLGETTV
>NC_019748.1|WP_015195130.1|4488963_4489923_-|DUF362-domain-containing-protein
MYTVSLIRAQSYELKELRKQIQYLIEPLGGINAFVKEGDRVLLKPNLLTGSRPTKECITRPEIVYCLAQLVQEAGGKPFLGDSPAFGSAKGVAKANGYLPLVEELNLPIVEFHGQRYQIESNGFDHLRLSKEAMDADVVINLPKIKSHLQLTLTMGVKNLFGCVPGKMKAWWHMEAGKDVHRFGEMLVETAKAIAPSLTIVDGIIGHQGNGPSGGEPRQLGILGASADVFALDIAIAEILNVNPELIPTIVAQSKLGCCSDLAQIQFPYQHPINLKIEDWKLPDALMPIDFGLPRVLRSTFKHFYIRFIQEPIKTYTSK
>NC_019748.1|WP_015195131.1|4490177_4491431_-|methionine-adenosyltransferase
MSRRYLFTSESVTEGHPDKICDQISDTIVDALLSEDHHSRIAAEVVVNTGLVLITGEISTQAHVNYVDLARQKIAEIGYVNAENGFSANSCSVLVALDEQSPDIAQGVTAAQEQREELSEDELDQIGAGDQGIMFGFACNETPELMPMPISLAHRMSRRLAAVRKTGELAYLRPDGKTQVSVIYEDGQPIGIDTILISTQHTETIGEITEGSAVQNKIKTDLWEAVVQPVFGDLSVKPDQNTRFLVNPTGKFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSASYACRYVAKNIVAAGLADKCEVQVSYAIGVAKPVSIFIETFGTGKVSEEKLLTLVKEYFEFRPAGIIQTLNMRRLPSERGGRFYQDVAAYGHFGRNDLDLPWEKTDKATLLKEQSLSGTLA
>NC_019748.1|WP_015195132.1|4491507_4492275_-|HAD-family-hydrolase
MVTIKCCDRAWNNIQAIIFDKDGTLEDSHNFLRELGITRARIIDAQIPGIGEPLLMAFGIDNNFLDPTGLMAVGSRQENEIAAAAYIAETGCSWFKSKQIAANAFVEADRYCQKTAVNAPLFPGSLELIKLLSQVGLKLGILSADSTAKVEEFVKIHQLSDYIQLAMGTDRGLTKPDPQLFIQACQKLEVEPSCTVMIGDSQGDIIMAQAAGAAGTIGIAWNGFEATHLKKADVAITKCLAGSEIGCWEQIQVLH
>NC_019748.1|WP_015195133.1|4492368_4493367_-|30S-ribosomal-protein-S1
MINQKENVTRDIGFTHEDFAALLDRYDYHFSPGDVVPGTVFSVEPKGALIDIGAKTAAYIPIQEMSINRVDDPAEVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAKEAKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVGQVVRGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEAGDMLKNRDLVFEKAEEMAEKYRQKLLAEAQGLTLEGEEETAAVDATEEISEEEMVAAVED
>NC_019748.1|WP_015195134.1|4493793_4494330_-|transcriptional-regulator-NrdR
MQCPYCQSTESRVLESRSTEGGQSIRRRRECLRCKHRFTTYERIEFVPITVIKRDGNRESFDRSKLIRGMIRACEKTEITYKRIEAIVDEIEAQLQQSFEREFTTNEIGELVLKYLRQENEVAYVRFASVYRKFKGIKDFVETLNHLQKEDLNNSEDDNIWQNLEQQNASTPLLDCIS
>NC_019748.1|WP_013321375.1|4494520_4494616_-|photosystem-II-reaction-center-protein-T
MESVAYILILTMALAVLFFAIAFREPPRIEK
>NC_019748.1|WP_015195135.1|4494844_4496377_-|photosystem-II-chlorophyll-binding-protein-CP47
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELALFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWGGWSVTGETGVNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVYWDLELFQDTRTGQPALDLPKMFGIHLFLSGLLCFGFGAFHLTGLWGPGMWVSDAYGLTGHIQPVAPEWGPAGFNPFNPGGVVAHHIAAGVVGIIAGLFHLSVRPPERLYRALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQSYFQTEIQRRVEDNLAAGNTLSQAWSKIPEKLAFYDYVGNSPAKGGLFRTGAMDSGDGIAQEWLGHAVFKDSEGRELNVRRMPNFFETFPVVLTDSDGVVRADIPFRRAESKLSVEQAGITVSFYGGALDGQTFDDPFVVKKYARKAQLGEAFAFDTETFNSDGVFRTSPRGWFTFGHACFALLFFFGHIWHGSRTLYRDVFAGVDPELEAEQVEWGFYQKVGDKSTRRGQPI
>NC_019748.1|WP_015195136.1|4496667_4496994_-|hypothetical-protein
MKYFFLSDGWTYTRVWEFGGLWDENSWRRKPQIKRLNCGIVQQQETLWLYQVEDAVIMVEVKPTQNLNGASPNIGQVVLKRLITAEQVIEILAQSEILVTSVSNQNKL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019748_2	2.5\|536936\|37\|NC_019748\|PILER-CR,CRISPRCasFinder,CRT	536936-536972	37	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	29750-29786	9	0.757
NC_019748_2	2.5\|536936\|37\|NC_019748\|PILER-CR,CRISPRCasFinder,CRT	536936-536972	37	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	27160-27196	9	0.757
NC_019748_2	2.5\|536936\|37\|NC_019748\|PILER-CR,CRISPRCasFinder,CRT	536936-536972	37	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	275102-275138	9	0.757
NC_019748_2	2.8\|537159\|37\|NC_019748\|PILER-CR,CRISPRCasFinder,CRT	537159-537195	37	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	29750-29786	9	0.757
NC_019748_2	2.8\|537159\|37\|NC_019748\|PILER-CR,CRISPRCasFinder,CRT	537159-537195	37	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	27160-27196	9	0.757
NC_019748_2	2.8\|537159\|37\|NC_019748\|PILER-CR,CRISPRCasFinder,CRT	537159-537195	37	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	275102-275138	9	0.757

1. spacer 2.5|536936|37|NC_019748|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 9, identity: 0.757

ttttttgtttaaatattctgagatta----attgtcgtcat	CRISPR spacer
ttttttgttaaaatattctgaaattattctattaact----	Protospacer
********* ***********.****    ***. *

2. spacer 2.5|536936|37|NC_019748|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.757

ttttttgtttaaatattctgagatta----attgtcgtcat	CRISPR spacer
ttttttgttaaaatattctgaaattattctattaact----	Protospacer
********* ***********.****    ***. *

3. spacer 2.5|536936|37|NC_019748|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.757

ttttttgtttaaatattctgagatta----attgtcgtcat	CRISPR spacer
ttttttgttaaaatattctgaaattattctattaact----	Protospacer
********* ***********.****    ***. *

4. spacer 2.8|537159|37|NC_019748|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 9, identity: 0.757

ttttttgtttaaatattctgagatta----attgtcgtcat	CRISPR spacer
ttttttgttaaaatattctgaaattattctattaact----	Protospacer
********* ***********.****    ***. *

5. spacer 2.8|537159|37|NC_019748|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.757

ttttttgtttaaatattctgagatta----attgtcgtcat	CRISPR spacer
ttttttgttaaaatattctgaaattattctattaact----	Protospacer
********* ***********.****    ***. *

6. spacer 2.8|537159|37|NC_019748|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.757

ttttttgtttaaatattctgagatta----attgtcgtcat	CRISPR spacer
ttttttgttaaaatattctgaaattattctattaact----	Protospacer
********* ***********.****    ***. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3347267 : 3355584

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015194123.1\|3347267_3347684_-	8-oxo-dGTP diphosphatase MutT	G8DF69	Emiliania_huxleyi_virus	7.7e-05	25.2
WP_015194124.1\|3347853_3348192_-	DUF760 domain-containing protein	NA	NA	NA	NA
WP_015194125.1\|3348341_3349298_-	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	1.6e-42	36.0
WP_015194126.1\|3349877_3350516_+	histidine phosphatase family protein	E3T4P5	Cafeteria_roenbergensis_virus	1.9e-07	29.8
WP_015194127.1\|3350524_3351400_-	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	3.7e-41	37.0
WP_015194128.1\|3351402_3351678_-	DUF1830 domain-containing protein	NA	NA	NA	NA
WP_015194129.1\|3351928_3352150_-	hypothetical protein	NA	NA	NA	NA
WP_015194130.1\|3352349_3353159_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	4.1e-26	33.9
WP_015194131.1\|3353245_3354313_-	HAMP domain-containing histidine kinase	W8CYM9	Bacillus_phage	1.5e-12	36.8
WP_015194132.1\|3354375_3355584_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	6.7e-33	40.3

DBSCAN-SWA_2

4304761 : 4349668

Tupanvirus(20.0%)

integrase,tRNA,transposase

attL 4330135:4330157|attR 4352035:4352057

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015194953.1\|4304761_4306519_-\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	1.8e-95	37.4
WP_015194954.1\|4306902_4307217_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_015194955.1\|4308015_4308192_+	hypothetical protein	NA	NA	NA	NA
WP_015194956.1\|4308396_4309017_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_015194957.1\|4309063_4309594_-	hypothetical protein	NA	NA	NA	NA
WP_015194958.1\|4309772_4310111_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_015194959.1\|4310187_4311621_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.4e-23	28.4
WP_015194960.1\|4311892_4312384_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.0e-24	42.1
WP_015194962.1\|4313278_4315264_-	single-stranded-DNA-specific exonuclease RecJ	A0A0R6PDC6	Moraxella_phage	3.0e-30	35.0
WP_015194963.1\|4315442_4316888_-	LCP family protein	NA	NA	NA	NA
WP_015194964.1\|4317145_4317505_-	hypothetical protein	NA	NA	NA	NA
WP_015194965.1\|4317550_4318171_+	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_015194966.1\|4318222_4319128_+	DUF752 domain-containing protein	NA	NA	NA	NA
WP_150109093.1\|4319398_4320427_+	response regulator	NA	NA	NA	NA
WP_015194968.1\|4320507_4321875_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L4K9	Tupanvirus	1.4e-26	34.8
WP_015194969.1\|4322114_4322456_+	hypothetical protein	NA	NA	NA	NA
WP_015194970.1\|4322510_4324856_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_015194971.1\|4324852_4325647_+	OmpA family protein	NA	NA	NA	NA
WP_015194972.1\|4325649_4327158_+	hypothetical protein	NA	NA	NA	NA
WP_015194973.1\|4327272_4328259_-	porphobilinogen synthase	NA	NA	NA	NA
WP_015194974.1\|4328876_4329230_-	hypothetical protein	NA	NA	NA	NA
WP_015194975.1\|4329577_4329817_+	hypothetical protein	NA	NA	NA	NA
WP_171815462.1\|4330103_4330262_+	hypothetical protein	NA	NA	NA	NA
4330135:4330157	attL	NA	NA	NA	NA
WP_150109173.1\|4330406_4331222_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_015194977.1\|4331424_4332540_-	ABC transporter permease	NA	NA	NA	NA
WP_015194978.1\|4332620_4334225_+	hypothetical protein	NA	NA	NA	NA
WP_015194979.1\|4334393_4334864_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_015194980.1\|4334877_4336224_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015194981.1\|4336532_4337297_+	Tic22 family protein	NA	NA	NA	NA
WP_015194982.1\|4337318_4338209_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_015194983.1\|4338210_4338804_+	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA
WP_015194984.1\|4338813_4340148_-	cytochrome P450	A0A2I2L481	Orpheovirus	1.4e-20	24.3
WP_041620195.1\|4340412_4341006_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015194986.1\|4341030_4341423_+	hypothetical protein	NA	NA	NA	NA
WP_015194987.1\|4341466_4341961_+	hypothetical protein	NA	NA	NA	NA
WP_015194988.1\|4342365_4342971_-	chorismate lyase	NA	NA	NA	NA
WP_015194989.1\|4343039_4343681_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_015194990.1\|4343718_4344099_-	hypothetical protein	NA	NA	NA	NA
WP_015194991.1\|4344423_4345038_+	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	1.7e-08	29.9
WP_015194992.1\|4345199_4345607_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.3e-25	44.5
WP_041619576.1\|4345638_4346805_+\|transposase	transposase	Q19ZT4	Mycobacterium_virus	1.4e-11	24.1
WP_015194993.1\|4346899_4347994_+\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	1.4e-13	29.7
WP_015194568.1\|4347994_4349668_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
4352035:4352057	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_019765

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019765_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019765_1

31939-32557

TypeI-D

Consensus_repeat	Method
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CRT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	PILER-CR
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CRISPRCasFinder

8 spacers

cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL

The CRISPR arrays of NC_019765_1

>merge|NC_019765|1|31939-32557|CRT,PILER-CR,CRISPRCasFinder
CTTATTCGCTAACCATAAAATTAGATTTAGTTTAAACTTGAAACTTTCGTAGAAGCTGAGAATCGTAATAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTTTATCTTTTCTCAATCAATTGATAAAGGTCGTAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACAATGAGTTTAAAGATTTGCTTATGGCGCAAGTTTGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATAGATGGAAATTCCTCTTTCTTCGGAAAAAATTATCGAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATTGTTTCTCAGCAAACGTAATTGGTTGCCAGTCATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTGCTACGTTCGTAAACTTGCGTTTCAAAAGTCCCTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTGAGGGAATTGATATGTTTGCTCGTAAAGGTGATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACCAATCCCCCCTTCGTCGAGGAGCAATACAGAGTTAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACT

>NC_019765|1|1|31939-32556|CRT
CTTATTCGCTAACCATAAAATTAGATTTAGTTTAAAC	TTGAAACTTTCGTAGAAGCTGAGAATCGTAATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTTTATCTTTTCTCAATCAATTGATAAAGGTCGTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AATGAGTTTAAAGATTTGCTTATGGCGCAAGTTTG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGATGGAAATTCCTCTTTCTTCGGAAAAAATTATCGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATTGTTTCTCAGCAAACGTAATTGGTTGCCAGTCAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTGCTACGTTCGTAAACTTGCGTTTCAAAAGTCCCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTGAGGGAATTGATATGTTTGCTCGTAAAGGTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CAATCCCCCCTTCGTCGAGGAGCAATACAGAGTTAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC

>NC_019765|1|1|32009-32483|PILER-CR
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTTTATCTTTTCTCAATCAATTGATAAAGGTCGTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AATGAGTTTAAAGATTTGCTTATGGCGCAAGTTTG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGATGGAAATTCCTCTTTCTTCGGAAAAAATTATCGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATTGTTTCTCAGCAAACGTAATTGGTTGCCAGTCAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTGCTACGTTCGTAAACTTGCGTTTCAAAAGTCCCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTGAGGGAATTGATATGTTTGCTCGTAAAGGTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC

>NC_019765|1|1|32009-32557|CRISPRCasFinder
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTTTATCTTTTCTCAATCAATTGATAAAGGTCGTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AATGAGTTTAAAGATTTGCTTATGGCGCAAGTTTG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGATGGAAATTCCTCTTTCTTCGGAAAAAATTATCGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATTGTTTCTCAGCAAACGTAATTGGTTGCCAGTCAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTGCTACGTTCGTAAACTTGCGTTTCAAAAGTCCCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTGAGGGAATTGATATGTTTGCTCGTAAAGGTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CAATCCCCCCTTCGTCGAGGAGCAATACAGAGTTAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019765.1\|WP_015211896.1\|30093_31926_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240271
NC_019765.1\|WP_015211899.1\|36754_37345_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019765.1\|WP_150109184.1\|20854_21589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373078
NC_019765.1\|WP_015211894.1\|25897_26134_-\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_015211903.1\|40057_43534_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|274469
NC_019765.1\|WP_041620467.1\|22393_23401_-\|RRXRR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379519
NC_019765.1\|WP_015211892.1\|23648_24446_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_019765.1\|WP_015211905.1\|44053_46234_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_019765.1\|WP_015211900.1\|37350_38175_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019765.1\|WP_015211901.1\|38191_38896_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|187842
NC_019765.1\|WP_015211893.1\|25053_25920_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|163448
NC_019765.1\|WP_015211895.1\|26326_29977_+\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_041620464.1\|19185_19533_-\|transposase	unknown	unknown	gnl\|CDD\|379129
NC_019765.1\|WP_015211888.1\|20009_20882_+\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_015211897.1\|35426_35702_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019765.1\|WP_015211904.1\|43580_43760_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NC_019765.1\|WP_015211907.1\|46725_47646_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_019765.1\|WP_015211890.1\|21742_22276_-\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_015211898.1\|35705_36713_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_019765.1\|WP_015211902.1\|38973_39975_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747

Protein	Function_ID	Function_description	E-value
NC_019765.1\|WP_015211896.1\|30093_31926_+\|hypothetical-protein	gnl\|CDD\|240271	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.	0.00362118
NC_019765.1\|WP_015211899.1\|36754_37345_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.73617e-49
NC_019765.1\|WP_150109184.1\|20854_21589_+\|hypothetical-protein	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	9.91212e-21
NC_019765.1\|WP_015211898.1\|35705_36713_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	6.58235e-150
NC_019765.1\|WP_015211903.1\|40057_43534_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	0
NC_019765.1\|WP_041620467.1\|22393_23401_-\|RRXRR-domain-containing-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	3.5072e-32
NC_019765.1\|WP_015211892.1\|23648_24446_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.32512e-39
NC_019765.1\|WP_015211905.1\|44053_46234_-\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.76825e-105
NC_019765.1\|WP_015211904.1\|43580_43760_-\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	7.68828e-13
NC_019765.1\|WP_015211901.1\|38191_38896_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|187842	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family.	6.64047e-76
NC_019765.1\|WP_015211893.1\|25053_25920_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	3.0844e-41
NC_019765.1\|WP_015211902.1\|38973_39975_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	4.49851e-171
NC_019765.1\|WP_041620464.1\|19185_19533_-\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.77739e-14
NC_019765.1\|WP_015211897.1\|35426_35702_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.33973e-34
NC_019765.1\|WP_015211907.1\|46725_47646_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	3.53448e-08
NC_019765.1\|WP_015211900.1\|37350_38175_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.89927e-48

>NC_019765.1|WP_015211896.1|30093_31926_+|hypothetical-protein
MNSSNKVKFITASDRQGEVILKYLNKTCQQALNYCQKNNLQSYEDFARTIKIIGDKNAEAKGEHLAIRVGIKENDLVLSLANRPQLGTTKSIKMLEHLGSEEKYQFTRSTVEELLQKKEAKESDRLNSQELSDFSNSFANETELIERGKKNSRLDVVDLIEDRSTSASTEVPDDLLFETAESRSKLEGIDGRHKPLGLTQGTRPHDPVNELLNDSSEDIKTQSNDKSLSDDKKQKQQSKTKQIQPDVVIKKTKKSQSKSSIADRASKTLMALGSKADTYTQDTDGMTVMAASLKMGAVGIAFANKLLEKREERKLKATIDKILAVQERTSQLVERSQSLKQQADKPEVESELDLDEDVKIESNNELDVDEDLDLDDELDLESDITEQLGKAVKTIDRQLMDVDPDISAEPIVIDRAADFYQQLEQINAALDRLEQKLDLLEKRIEHLEQLLDKQEEKDDVELDSEADLVSDLWDEDEQNQVDEKAEDLDTQLVNVLLDVSEKYKQINPNSKSEILIGDRCRLCCDRADEKKIITIEERDNDEVLEIFKATINKDEFVIDKDELDEEEKQAIVESFSQKLEEINDYLDKQQKQSQSNVKQEKKQKEIAIID
>NC_019765.1|WP_015211895.1|26326_29977_+|hypothetical-protein
MSHNQNNQNSSVTETGLKIPVIDLSLAESGRYLSEPENITDSLLELLGESNDLSSLVIVKLERDRGKQLQFEDPKLAEQIYLNQLDKVDFGDNIKRGIIFSSGKSVYFGNKELIDNIREQFFKTQPDHCCRYGSLLVSSCLQGAVLFDSSKDNSPIKLKIVDSQSNNPKEREAAADFFTGDCHGKISPHLAEEVGAKSKRPFQFRMAWMTGWNQNETKNSTPKTSFLAKGTFLPNRTLTEARGYDIILDRSSIKGIAKDKLSELIPCGDYQLPKMALGNRANAELQKYDNSWQFSIWFSKSAIASDLVPATKAEAQRLAQIQSNPLKLNRYIVEQHDKKASFIQTDDDAVSVEGSEDEREAKESRLVSLLRQDNKGLLTGYPKLVEFQRSQLRKIWLNLAIKGALHHDSAMAQPCDNLKPGTIVAPHLENGTEVIVTRYPIVSKDNIRRYTVDNHQPAAQSLLNYRSCVFIRSDQAMQHHQCDFDGDQLIVTPTSRFPQISQEIRRANEPSEYPSVVKREKTNYGKPKYTNLKQIAAAIKQNSIGYVATLIGRVQSSSNPYQKQSRREKFESAKVKLLGKLFDALQIEVDSPKSAARYQDRHGDIIARTKNWVENFPSPLFDYKKDERVYKTSCLPTSTDNNIDCIAERAVNPQWSRTRIKSLELDRFSFLFDEPNDKQDLKYWEQVCLPKAEEIKQRYRDRSREIHQANKDDPERKKQEFAQLYEDLRAIVDEEFPNAEERMLAASAMWKLETNNKSLKNHIAECKKLACRLNSTIELVKEHRFNSSLEPQNTWVVSVPFVRRDNSHNNSDVVNNSKNNSYRPLAAEFKAYLDKQGASYEATVNSDLPLIDFALIDPQPELIKNLQAKLGNNDNDRFVWQEHNLTTYKGDTVPLQIVPPKDYTWVEMNEENLAKGSLILNLFAAEICQRLEEYQFTSFKLIGAKHNDYSQVDFSDKRLQNKEFEFVVGKYNNPNDYRHGQPMVQLKSKDLAMFEPQSPRLPVGSTFTASIEQSKGALILHVKPESVRLPESELQKQGKKTTKAQQKRLKRKFYLDTPSQLPMDKEVNGNTQAKKKRNFCLNIEIPKSTAETEREPEPNRTLTQPTIKQLLSQDASIVLHQSIKSQHQKTGENQLKIDSKGEWTATIRGHNCKVCDRHKKIVFQSNLATDKIDKPLSEANAERFFKMCEQETKKESLNPQKSNRIKRKNKQEQLSI
>NC_019765.1|WP_015211894.1|25897_26134_-|hypothetical-protein
MKEKVTNTNCGNSLNDKQLLKKQSREKIKVHHSLMEFYTDTGLIDEYDIEVDYSNEEKNSTYGVTKEDLDEPNFWQEL
>NC_019765.1|WP_015211893.1|25053_25920_+|ThiF-family-adenylyltransferase
MHLARSILNARHIILPVYQQIEFYLVGCGGTGSWLAPSLCRLARYLTQRGKNTTLIFIDPDTVEEKNVLRQNFCDAEIGLSKAQTLALRYSLSWGVDIEGLPDSFNPEIVARDYYQREHKLKIIIGCVDNANARQSIARALSQYQSWHTRNVASELWWLDCGNHSHSGQVLIGSHLSPELDTYQFHQLGCIKLPAPCLQHPELLEPKPEELSQTNISCAELELLNTQSLTINQRMAAEAASYLIQLITGKLNRLATYLDLNSGFTTSTFITEEAIAKIINHAKALAKN
>NC_019765.1|WP_015211892.1|23648_24446_-|ParA-family-protein
MQTIAAVSLAGGQGKTTTCYFLAKMLAQAGKKVLAIDCDPQANLTFFLNHEVAPDRPTLLEVLKGTVSTEDGIYPTNDENLFLVPADSGLAKVTEYLSGSGTGALILQIRLQAVKELFDYVIIDVQPTRSQICLTAVGAADWVLIPAESATKGVNSLLDTQKFLAEQAQVMAFRGQILGIIPFRDRWVGRTQTLESRDNIAAMREFADDAPVLPTIRESEKFKQATRQGQLLSELGAKDLEYPFEKIIELLEDCKQLNQSIVVAV
>NC_019765.1|WP_041620467.1|22393_23401_-|RRXRR-domain-containing-protein
MYVPVVDKNQIPLMPTTSTRAKRWIKSGKATGFWKRGVFCVRLNIEPSNRNYQPIACGVDPGSKREGYTVKSKAHQYLNIQATTVDWVNEHLKTRREMRRARRFRKTPCRQPRANRLINKFCLPPSTKSRWQWKLRLCSWLSKMFPITTFVIEDIKAKTWGGKWGKSFSPLQVGKDWFYSELAKLAEVHTLQGMETKQIRDELGLKKTKNKLAETFEAHCVDSFALAYSVVGGNSLPKNTNLLIVVPLRFHRRQLHRLEHAPGAIRSPYGGTMSAGFKRGSLVKHPKYNLCFVGGSSKGRVSLHSVETGKRLCQNAKPQDIKFLTYNTWRTKYAN
>NC_019765.1|WP_015211890.1|21742_22276_-|hypothetical-protein
MNQDALERLRNRAKPTVQSRDLSTIPSVNKNEESSQKPEVSVIQEERVAKEAESLAYDRHNLKDISNSSNQDVEISSTTDALNAIPALDELSSPSMDIKTKQSTIRLEQKLSQKLSQKCQEEEISREVFLEALFVYFENHKSIQSKVLAEARQRDRQRQKIANYRRAKSMIERFGNE
>NC_019765.1|WP_150109184.1|20854_21589_+|hypothetical-protein
MESMFDSPLISGDVLREVIAKAPRNLDNLDAELLFIERNYIFHYLEGNRHVYKSLTPEVLRNAFANEPTDTDWLSKSVIRHGSGVSGNWIVCFFPQQRYSLQVGQEQFYLPLPSFVFMGIGSSYFLWAVKKNQFEPNLIVYHAPLPNIMADGRICWGNVYPTSVGLSNVEAVWSKFIGSVFNRDYTQGKSRKYKNNIIEQLKILNRKEKISSRCRYPVSDLVPVRNKLTVAQAVKAIIKNVDCG
>NC_019765.1|WP_015211888.1|20009_20882_+|hypothetical-protein
MNANTSVPKIATVEQAVDLLYQCLDLSTLGNAVEYLEQRELRYQLLFLYSHFFPQQYSQSKAAVYPGLDEDDGLIQYTEREIEFLQLVHRDLFPLNYLDYLLEEQIDFIEPRLILVTSLGLGQLEDYEMSYCDLALGDKILLPMTSVGRENLEHWQNHLGEDCYGEWFEAELSSPPTMAKIAHPHSIDFKKLRRMCFQAKKPICYLPLTLRLLDLNTNNIWLDEEGGWLQGMKGTTLDWSKENVIYLHREYLKAQRILDAAGSFIGWLEADLNNNFQSVLRLWNQCSTPH
>NC_019765.1|WP_041620464.1|19185_19533_-|transposase
MAGRFEGLNDLEWKLFEDILRTSQRRSRGMPPVPFRYVLNSLLYILITGCRWCDLPTGKQWASKSSAHRWLKRWQEDGTMEQLQSRILGIAQNQGMINWNYGAIDGSFSPWKRWR
>NC_019765.1|WP_015211897.1|35426_35702_-|CRISPR-associated-endonuclease-Cas2
MFVIVSYDISEDKRRTKIHDILSSYGQWMQYSLFECNLTKTEYAKLRSRLKKIINSDTDSIRFYFLCSCCQNKIERIGGELVRDDTIFFVE
>NC_019765.1|WP_015211898.1|35705_36713_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYITQEYNSFIGKTDERLTVKADKKKLLDVPLIKIDGLVIMGQATISPAIIKELLERKIPLSFVSATGKYEGCLQPELTKNIFIRKAQWLAAGETATAIHLVRGFVRGKLKNYRHLLMRRRREYPELNLDTAITKLEQAIAPIDLSNNIDSLRGLEGAGSAAYFGCFDRLIQNPNFNFKSRVRRPPTDPVNSLLSLGYSLLRHDLQSAVNIVGFDPYLGYLHYQRYGRPSLALDLMEEFRPLVVDAIVLNAINKEKLTPNDFTSEPISNAVSLTKEGLKVFLRLYEQKKQSVFKHPVLKRQCTYQEAFEIQARLIAKYLMEETDKYPPLILK
>NC_019765.1|WP_015211899.1|36754_37345_-|CRISPR-associated-protein-Cas4
MDREENYVPIAALNHYAYCPHRCGRMFCLGDFIDNHYTIEGTSLHERVHTISQENREYTWQIRAIWLKSEQYGLIGKSDLIESEKGELYPVEYKRGKRDDWSNDALQVCGQALCLEEMTGLSVTTGYVYYAHSHQRQEINIDRNLREKAIATIAEIQAMMITGKIPSPVYKPRCKGCSLYSCCLPQAANKVKRYQE
>NC_019765.1|WP_015211900.1|37350_38175_-|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLLPLSPISPGYSQGKHLHALFLNIVSHCDRSLGDYLHEQKTNKAFTISPLQIVGNKNQKIQYQHNKPIPVNTPCWWRISLLDESLFGKLTQLWLNINPEKPWHLGNADLKISSILGTSQPNQPWSNAIPYARLYEEASANNNKFTFSFATPTTFGKGKQNDSLPTPENIFKSLCKRWNKYSNIEIPETELSLLSLFPSYFNIHTEMVSDYSKSKLIGCVGEISYQAFGNIDLQQIKYLNTLADFALYCGMGKKTTMGMGMVRRINN
>NC_019765.1|WP_015211901.1|38191_38896_-|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MTTIYRCQLELHDSLYFATREIGRLYETEPILHNYALCYALGLIDSKKYATNVAEEHSYRYFSAEQMPQYKQHLTPLNQQKIYVTPAKSLNHTSVLNTWKYANNNYHVEMEKTQKNIPSFGRAKEIAVESQFEFFIISESPLNFPQWKWIRLGKWMSKAQVIFEQLTSIKAHQGLFTCIHPLNPLDVMFTNQVFSYDVINMPPVSLIQNAQIQGQFYQIDNNLKIPVNMQYRFS
>NC_019765.1|WP_015211902.1|38973_39975_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MTFLKSIDAKYFHAEIPYKPMGKYAHFLTIRVTESYPLFQTDGELNKARVRAGITNQNPISRLTMFKRKQSTPERLIGRELLRNYGLVKPDECEYNVDFAKNNADCIIYGFAIGDGGSEKSKVVVDSAYSITSFDESHETFTLNAPYEHGTMSKNGEVTSRINQQDHIRPQVFFPSIVTLKDPTEASFLYVFNNILRTRHYGAQTTRTGRIRNELIGVIFADGEIVSNLRWTQAIYDKLGGKINSLDPLNEDEVDRAAKEAIEQLMSQEFIVHQDFIGDNFTPILNDVKTLTGSEENIKAILTKANQEAQNYFDNYITKSKDKDKDKKTAKSK
>NC_019765.1|WP_015211903.1|40057_43534_-|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MNIKQDKNISQQLSLFDETEIDLNDSNLFDDDFDLNFESSDRTIEIDSELLTLKLLRKAITAEHPEDLVMAYFAEYVLPNLLKFAIGVTAKGGKFFDRIDSERQAANKSRVRRDNAGDQSLNTHLLNGLFPAYLISRILEQADTTVKREFKKFRDIKQRILVSSFILHDFEKFDYNLFACIPNKYKDNNLDIRKLSIEEHREILSIIVTELSLDKFLTADLEEDEQWQDYLDDLLFIAYNTQVRYDTNLNLSEYGLNPKLKDRTLICLADLCCLADSLASIIKHPQDAEHDRLKGLIHNLSDGQLKFTYHRLAENRGVLTNVVNNALIQAHTDLNTEDNNYYQPLLYLPTGVIYLAAKDAPSISIADIPNRVISSIKQLCADRLMQSQTGFGRDGKGMKYADYYEQFFNIVGLMQVALRATLRILNDKKSSVAKSRSNNLVKFQQQGVLPTDYDFTFEDDIRCDRLAEFGDVVSRKIWGEKVNQIEAVIKALTDKEAEKLPDIDLIIEIAEYWNLKQYIPQIREIQNINQSLKELKLKGNTGGVPYEWYYLAAKYLQHNPGIEDVRETGEKLIEFIAGLIQPIVDKYELPDGWDDLRLWVNRIVMLPLPQPLSYKERGERQGEGSHTTAQVFLDELNNYQLAKKPGRGRQLICSISHSAYTVTEQMESAVLFTPQVYTNKQMLGGSNAKRNISSIAGVEMMLRQILMNNTQAVGKRFEDGKYRYLYFYPTYYFTPETNKFLTYAYANIAQTRFSSGVRNHFINNELQANFSKQRYQSVDAFLIDEDLQVKQNLPEDDPNYKKDYSFKLSYPDDLPLTFYFMALPPGRDSTDTESWVMPAWLAFAFPMILDVKTVVSESPIPPFTDGTEFEETVFLDSAPQAFKVLTKRDRFRLDYILEGWEEGDKNYPAPLNVLTAAYAIHLDVNAKQGKSGYNSNWGKLTELAKDLETSPLYVFNYLNQWVRRQNVDTARIEKIKLYAYHFYPCFDPYAQYNFTKQEWNMEKLAKSPLNHPLQLTELYRKFYRANKLYNPKANAVLKPIEIAADTILKAESTVFHGETLVHAVAAEVTKLMDRVHASTADGRWVFTNQERDKERQAILEFSRYFVEEVFEKSFAGDRARLAGKQINLIRDTCEFLYRLENDKDIEEKKKNNPDDSEE
>NC_019765.1|WP_015211904.1|43580_43760_-|DUF433-domain-containing-protein
MVNQQKLLERITVNPKIFRGKPIIRNRCLAVEYILGMLAAGDTKNILLNAYPWLEIEDI
>NC_019765.1|WP_015211905.1|44053_46234_-|type-I-D-CRISPR-associated-helicase-Cas3'
MKIYSIKLKPIYSCSALNIPKEIKLPDGWLLSWHQRETYLALNDPEVNVVINTGMTGDGKTLAGDLDVIFGDSLALKMYPTNELARDQEVSAREYLKQFELENKLRINRLSGQDLELYAEQEGIKKKTAIKTRADQSEIILTNPDILHYLHRGAYLTTYDNPDLLWNKIDKRFDLFVFDEFHVFSAPQIACIINTMLLIRHTNYRKKFLFLSATPDRDFIDRLVQAGFKVKVIDPVAENKYRFPTTQAEASELKKYNWREVSRQITLNFIALESGSTSSETWLKENSDRIIDLFIKYPGSKGAIILNSIAAVKRLVSYFAELLQPLGVNVGENTGLSGQYAKNQSLAADLVIGTSTIDVGVDFKINFLFFESADAGNFIQRLGRLGRHDGYEKDGEFIKFNNYIAYALVPNFLVERLFLKESAPLEVEQEYNRPFFHQVIRDEYRHINDFRGYYSRWGGVQSVKLCFQLGHPNIKARYKSDLKRLQQDCETVFNTSLKKTIGKIKGWEKEWKELSGNRSGNPIAEDASSFRGVSCLQCGLYDLTETNEADRYKTYGLPGILSNLEIETITKAEFDRLLAATSKKINTPIPKSRFNYCLGFMKLHRYREERLNWQFTYHGDLKDISEAYKVMVLTQIQVWQPENYWISQINKQLKKQALVSYVLPFAVAEIKNRLRLPMHFQIYPISDRTSIHDPSPLYSIAFGQSALLIDTLAHWLKSKGGKSWFI
>NC_019765.1|WP_015211907.1|46725_47646_+|WYL-domain-containing-protein
MSTKKETLTLSLAAGTKAKLEEIAHELGFFWGKSPSPSALVTAIANREIATGEPFYLSSDRIKALRQAIKVLIDTGYVTEAETIARLVLDKAQLEPTLRQELLRIVNTHLDKWRLVIDEYISNKQPFEILYTNSQGQELIFNVHFAQIDFHEKRFYLNIWCEETEDVSEDNKKYFPSLIHNRCLSFERIQGIIPKSGEWRESLDHIQVHLQFTGWMVKAYKPREEDIDDVIDEDAIPEPSSGARVVRGGVRKITRQVFNPFWLVREIKGYGRNCQIIAPSGLRNYFRQELIEICQQYDIETNFPVR

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Crispr_ID: NC_019765_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019765_2

32592-35193

TypeI-D

Consensus_repeat	Method
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CRT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	PILER-CR
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CRISPRCasFinder
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	PILER-CR
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	PILER-CR

35 spacers

cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL

The CRISPR arrays of NC_019765_2

>merge|NC_019765|2|32592-35193|CRT,PILER-CR,CRISPRCasFinder,PILER-CR,PILER-CR
GTTTCAATTCAAACGGGTGTCGCAGGAACATGGCAACTATTCTGGGTATTATGTTATTGAGGATAAATAAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACAGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACCCATTAGCAGCAAACCAATTCAAACCACGAAGACGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACAAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTGATGGAATGGTTCGGAGTCGAATTTTTTCTGATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACAAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTAATAAAAATCTAGATCAAGATGATTTAAATGTACTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTAGAGAGAATTTAGATTACAATCGCAATCTTTTAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTATCTTCCGTCGATCGCGATTTGAGTTCTTTTGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACCGATTCAAAAGTAAATACCTCAGAATACTTTATTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTCAAGATTTATTTGAAGATGTTACTGATTCTAAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACAGTGGAGAATGAAACTAAAGTAGCTTGGTATGCTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTAGTACATACTCAGTAGTACCATCATCGGCGGTATAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTAATAACTGGAAAAATATTAAAGGGTTTAACTACGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTGAAAATATATATTTTCTCCTTCTTCCCAATTTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACCTATCCCAGTTATCTTTTTGATCAAACCAATCAATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACCCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACCATTTGAGAATTAGAGAGAGCAAGAGCAATAGATCGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTGGAAACTACAGCACCAGTAGAACTACAAGCTTCTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCCGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGATTTTTTCAATGGCTGGCTGTAGCTTTTTGAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTATTTCATTCAATGGGCGCACTACTCCACCAGAAATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACACATGGTAATTCAACCGTTGCCGTATCATTGGAAGTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTTGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC

>NC_019765|2|2|32592-35193|CRT
GTTTCAATTCAAACGGGTGTCGCAGGAACATGGCAAC	TATTCTGGGTATTATGTTATTGAGGATAAATAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCATTAGCAGCAAACCAATTCAAACCACGAAGAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGATGGAATGGTTCGGAGTCGAATTTTTTCTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATAAAAATCTAGATCAAGATGATTTAAATGTACT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAGAGAGAATTTAGATTACAATCGCAATCTTTTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATCTTCCGTCGATCGCGATTTGAGTTCTTTTG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CGATTCAAAAGTAAATACCTCAGAATACTTTATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTCAAGATTTATTTGAAGATGTTACTGATTCTAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTGGAGAATGAAACTAAAGTAGCTTGGTATGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGTACATACTCAGTAGTACCATCATCGGCGGTATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAATAACTGGAAAAATATTAAAGGGTTTAACTAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGAAAATATATATTTTCTCCTTCTTCCCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CTATCCCAGTTATCTTTTTGATCAAACCAATCAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CATTTGAGAATTAGAGAGAGCAAGAGCAATAGATC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TGGAAACTACAGCACCAGTAGAACTACAAGCTTCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GATTTTTTCAATGGCTGGCTGTAGCTTTTTGAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATTTCATTCAATGGGCGCACTACTCCACCAGAAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACATGGTAATTCAACCGTTGCCGTATCATTGGAAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC

>NC_019765|2|2|32662-32844|PILER-CR
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCATTAGCAGCAAACCAATTCAAACCACGAAGAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGATGGAATGGTTCGGAGTCGAATTTTTTCTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATAAAAATCTAGATCAAGATGATTTAAATGTACT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTAGAGAGAATTTAGATTACAATCGCAATCTTTTAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTATCTTCCGTCGATCGCGATTTGAGTTCTTTTGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CGATTCAAAAGTAAATACCTCAGAATACTTTATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTCAAGATTTATTTGAAGATGTTACTGATTCTAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTGGAGAATGAAACTAAAGTAGCTTGGTATGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGTACATACTCAGTAGTACCATCATCGGCGGTATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAATAACTGGAAAAATATTAAAGGGTTTAACTAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGAAAATATATATTTTCTCCTTCTTCCCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CTATCCCAGTTATCTTTTTGATCAAACCAATCAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CATTTGAGAATTAGAGAGAGCAAGAGCAATAGATC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TGGAAACTACAGCACCAGTAGAACTACAAGCTTCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GATTTTTTCAATGGCTGGCTGTAGCTTTTTGAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATTTCATTCAATGGGCGCACTACTCCACCAGAAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACATGGTAATTCAACCGTTGCCGTATCATTGGAAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAA


>NC_019765|2|2|32662-35193|CRISPRCasFinder
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCATTAGCAGCAAACCAATTCAAACCACGAAGAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGATGGAATGGTTCGGAGTCGAATTTTTTCTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATAAAAATCTAGATCAAGATGATTTAAATGTACT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAGAGAGAATTTAGATTACAATCGCAATCTTTTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATCTTCCGTCGATCGCGATTTGAGTTCTTTTG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CGATTCAAAAGTAAATACCTCAGAATACTTTATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTCAAGATTTATTTGAAGATGTTACTGATTCTAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTGGAGAATGAAACTAAAGTAGCTTGGTATGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGTACATACTCAGTAGTACCATCATCGGCGGTATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAATAACTGGAAAAATATTAAAGGGTTTAACTAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGAAAATATATATTTTCTCCTTCTTCCCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CTATCCCAGTTATCTTTTTGATCAAACCAATCAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CATTTGAGAATTAGAGAGAGCAAGAGCAATAGATC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TGGAAACTACAGCACCAGTAGAACTACAAGCTTCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GATTTTTTCAATGGCTGGCTGTAGCTTTTTGAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATTTCATTCAATGGGCGCACTACTCCACCAGAAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACATGGTAATTCAACCGTTGCCGTATCATTGGAAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC

>NC_019765|2|3|32959-33588|PILER-CR
	AGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCATTAGCAGCAAACCAATTCAAACCACGAAGAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGATGGAATGGTTCGGAGTCGAATTTTTTCTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATAAAAATCTAGATCAAGATGATTTAAATGTACT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTAGAGAGAATTTAGATTACAATCGCAATCTTTTAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTATCTTCCGTCGATCGCGATTTGAGTTCTTTTGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CGATTCAAAAGTAAATACCTCAGAATACTTTATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTCAAGATTTATTTGAAGATGTTACTGATTCTAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTGGAGAATGAAACTAAAGTAGCTTGGTATGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGTACATACTCAGTAGTACCATCATCGGCGGTATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAATAACTGGAAAAATATTAAAGGGTTTAACTAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGAAAATATATATTTTCTCCTTCTTCCCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CTATCCCAGTTATCTTTTTGATCAAACCAATCAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CATTTGAGAATTAGAGAGAGCAAGAGCAATAGATC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TGGAAACTACAGCACCAGTAGAACTACAAGCTTCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GATTTTTTCAATGGCTGGCTGTAGCTTTTTGAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATTTCATTCAATGGGCGCACTACTCCACCAGAAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACATGGTAATTCAACCGTTGCCGTATCATTGGAAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAA


>NC_019765|2|4|33694-35193|PILER-CR
	AGTTCGTCGTGCAACTAAGGTGCAGAAATAATGGAATT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCATTAGCAGCAAACCAATTCAAACCACGAAGAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACGTTTTAAGCTCTTCAATAGTTTCATCAATTTGCTCTTTATGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACATTTATAACGATTGTTTGCAATATGGCGTAGGTAAAGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTTAAACGAATCCGACCCCGTAAAAGTTGACCTGTCCTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGGCGATCGCTCGATAAAAAGTAGCTGAAGA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGATGGAATGGTTCGGAGTCGAATTTTTTCTGAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AAATTTGCCCGTGTTCGAGCGTCTGTCCAATCCA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATAGTTCTCGCTTCTGCTTCGATTTTTTGAATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACTGCTGGTCGTATTGCTTTCCATAATTGGTCACAGGCTA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATAAAAATCTAGATCAAGATGATTTAAATGTACT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGGTAGCAAGATTTGATCGACTTCGGGGTTGGCGTTGATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTTAGAGAGAATTTAGATTACAATCGCAATCTTTTAGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAACTATCTTCCGTCGATCGCGATTTGAGTTCTTTTGGTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ATCGGCTGCATCTAATGCAGGTGCAGCACTCCTGGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CGATTCAAAAGTAAATACCTCAGAATACTTTATTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAAGTACTGAGCGAACATTTTACTTAGTTCTTCTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTCAAGATTTATTTGAAGATGTTACTGATTCTAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	AGTGGAGAATGAAACTAAAGTAGCTTGGTATGCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GTAGTACATACTCAGTAGTACCATCATCGGCGGTATA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTAATAACTGGAAAAATATTAAAGGGTTTAACTAC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TTGAAAATATATATTTTCTCCTTCTTCCCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CTATCCCAGTTATCTTTTTGATCAAACCAATCAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CCAGAAAAATAAGCTAGATTTGCTATTGTATATTTAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	CATTTGAGAATTAGAGAGAGCAAGAGCAATAGATC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TGGAAACTACAGCACCAGTAGAACTACAAGCTTCT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGACAGATCGATTAAATTTTGAACTGTTTTAATTGCGGCC
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TCAAGTCTTACCACAGCAGCTTGAGCCGTATCCGCAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACAAAGTAGTTGATTATTTAGAAATTGATTTTACTTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	GATTTTTTCAATGGCTGGCTGTAGCTTTTTGAG
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TATTTCATTCAATGGGCGCACTACTCCACCAGAAAT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	ACATGGTAATTCAACCGTTGCCGTATCATTGGAAGT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAGCTGAAACTTTAGCAGAATTATGGGGAGCAATTTT
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC	TAATCAAGTTGTAAATAAAGATTAGTTGTAGTTCCCAA
GTTTCAATTCCTCATAGGAATTATTAATAGTTTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019765.1\|WP_015211896.1\|30093_31926_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240271
NC_019765.1\|WP_015211899.1\|36754_37345_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019765.1\|WP_150109184.1\|20854_21589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373078
NC_019765.1\|WP_015211894.1\|25897_26134_-\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_015211903.1\|40057_43534_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|274469
NC_019765.1\|WP_041620467.1\|22393_23401_-\|RRXRR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379519
NC_019765.1\|WP_015211892.1\|23648_24446_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_019765.1\|WP_015211905.1\|44053_46234_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_019765.1\|WP_015211900.1\|37350_38175_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_019765.1\|WP_015211901.1\|38191_38896_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|187842
NC_019765.1\|WP_015211893.1\|25053_25920_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|163448
NC_019765.1\|WP_015211895.1\|26326_29977_+\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_041620464.1\|19185_19533_-\|transposase	unknown	unknown	gnl\|CDD\|379129
NC_019765.1\|WP_015211888.1\|20009_20882_+\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_015211897.1\|35426_35702_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_019765.1\|WP_015211904.1\|43580_43760_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NC_019765.1\|WP_015211907.1\|46725_47646_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_019765.1\|WP_015211890.1\|21742_22276_-\|hypothetical-protein	unknown	unknown	unknown
NC_019765.1\|WP_015211898.1\|35705_36713_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_019765.1\|WP_015211902.1\|38973_39975_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747

Protein	Function_ID	Function_description	E-value
NC_019765.1\|WP_015211896.1\|30093_31926_+\|hypothetical-protein	gnl\|CDD\|240271	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.	0.00362118
NC_019765.1\|WP_015211899.1\|36754_37345_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.73617e-49
NC_019765.1\|WP_150109184.1\|20854_21589_+\|hypothetical-protein	gnl\|CDD\|373078	pfam14460, Prok-E2_D, Prokaryotic E2 family D. A member of the E2/UBC superfamily of proteins found in several bacteria. Members of this family lack the conserved histidine of the classical E2-fold. However, they have an absolutely conserved histidine carboxyl-terminal to the conserved cysteine. Members of this family are usually present in a conserved gene neighborhood with genes encoding members of the Ub modification pathway such as the E1, Ub and JAB proteins. These neighborhoods also contain a gene encoding a rapidly diverging alpha-helical protein.	9.91212e-21
NC_019765.1\|WP_015211898.1\|35705_36713_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	6.58235e-150
NC_019765.1\|WP_015211903.1\|40057_43534_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	0
NC_019765.1\|WP_041620467.1\|22393_23401_-\|RRXRR-domain-containing-protein	gnl\|CDD\|379519	pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.	3.5072e-32
NC_019765.1\|WP_015211892.1\|23648_24446_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.32512e-39
NC_019765.1\|WP_015211905.1\|44053_46234_-\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.76825e-105
NC_019765.1\|WP_015211904.1\|43580_43760_-\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	7.68828e-13
NC_019765.1\|WP_015211901.1\|38191_38896_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|187842	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family.	6.64047e-76
NC_019765.1\|WP_015211893.1\|25053_25920_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|163448	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.	3.0844e-41
NC_019765.1\|WP_015211902.1\|38973_39975_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	4.49851e-171
NC_019765.1\|WP_041620464.1\|19185_19533_-\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.77739e-14
NC_019765.1\|WP_015211897.1\|35426_35702_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.33973e-34
NC_019765.1\|WP_015211907.1\|46725_47646_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	3.53448e-08
NC_019765.1\|WP_015211900.1\|37350_38175_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.89927e-48

>NC_019765.1|WP_015211896.1|30093_31926_+|hypothetical-protein
MNSSNKVKFITASDRQGEVILKYLNKTCQQALNYCQKNNLQSYEDFARTIKIIGDKNAEAKGEHLAIRVGIKENDLVLSLANRPQLGTTKSIKMLEHLGSEEKYQFTRSTVEELLQKKEAKESDRLNSQELSDFSNSFANETELIERGKKNSRLDVVDLIEDRSTSASTEVPDDLLFETAESRSKLEGIDGRHKPLGLTQGTRPHDPVNELLNDSSEDIKTQSNDKSLSDDKKQKQQSKTKQIQPDVVIKKTKKSQSKSSIADRASKTLMALGSKADTYTQDTDGMTVMAASLKMGAVGIAFANKLLEKREERKLKATIDKILAVQERTSQLVERSQSLKQQADKPEVESELDLDEDVKIESNNELDVDEDLDLDDELDLESDITEQLGKAVKTIDRQLMDVDPDISAEPIVIDRAADFYQQLEQINAALDRLEQKLDLLEKRIEHLEQLLDKQEEKDDVELDSEADLVSDLWDEDEQNQVDEKAEDLDTQLVNVLLDVSEKYKQINPNSKSEILIGDRCRLCCDRADEKKIITIEERDNDEVLEIFKATINKDEFVIDKDELDEEEKQAIVESFSQKLEEINDYLDKQQKQSQSNVKQEKKQKEIAIID
>NC_019765.1|WP_015211895.1|26326_29977_+|hypothetical-protein
MSHNQNNQNSSVTETGLKIPVIDLSLAESGRYLSEPENITDSLLELLGESNDLSSLVIVKLERDRGKQLQFEDPKLAEQIYLNQLDKVDFGDNIKRGIIFSSGKSVYFGNKELIDNIREQFFKTQPDHCCRYGSLLVSSCLQGAVLFDSSKDNSPIKLKIVDSQSNNPKEREAAADFFTGDCHGKISPHLAEEVGAKSKRPFQFRMAWMTGWNQNETKNSTPKTSFLAKGTFLPNRTLTEARGYDIILDRSSIKGIAKDKLSELIPCGDYQLPKMALGNRANAELQKYDNSWQFSIWFSKSAIASDLVPATKAEAQRLAQIQSNPLKLNRYIVEQHDKKASFIQTDDDAVSVEGSEDEREAKESRLVSLLRQDNKGLLTGYPKLVEFQRSQLRKIWLNLAIKGALHHDSAMAQPCDNLKPGTIVAPHLENGTEVIVTRYPIVSKDNIRRYTVDNHQPAAQSLLNYRSCVFIRSDQAMQHHQCDFDGDQLIVTPTSRFPQISQEIRRANEPSEYPSVVKREKTNYGKPKYTNLKQIAAAIKQNSIGYVATLIGRVQSSSNPYQKQSRREKFESAKVKLLGKLFDALQIEVDSPKSAARYQDRHGDIIARTKNWVENFPSPLFDYKKDERVYKTSCLPTSTDNNIDCIAERAVNPQWSRTRIKSLELDRFSFLFDEPNDKQDLKYWEQVCLPKAEEIKQRYRDRSREIHQANKDDPERKKQEFAQLYEDLRAIVDEEFPNAEERMLAASAMWKLETNNKSLKNHIAECKKLACRLNSTIELVKEHRFNSSLEPQNTWVVSVPFVRRDNSHNNSDVVNNSKNNSYRPLAAEFKAYLDKQGASYEATVNSDLPLIDFALIDPQPELIKNLQAKLGNNDNDRFVWQEHNLTTYKGDTVPLQIVPPKDYTWVEMNEENLAKGSLILNLFAAEICQRLEEYQFTSFKLIGAKHNDYSQVDFSDKRLQNKEFEFVVGKYNNPNDYRHGQPMVQLKSKDLAMFEPQSPRLPVGSTFTASIEQSKGALILHVKPESVRLPESELQKQGKKTTKAQQKRLKRKFYLDTPSQLPMDKEVNGNTQAKKKRNFCLNIEIPKSTAETEREPEPNRTLTQPTIKQLLSQDASIVLHQSIKSQHQKTGENQLKIDSKGEWTATIRGHNCKVCDRHKKIVFQSNLATDKIDKPLSEANAERFFKMCEQETKKESLNPQKSNRIKRKNKQEQLSI
>NC_019765.1|WP_015211894.1|25897_26134_-|hypothetical-protein
MKEKVTNTNCGNSLNDKQLLKKQSREKIKVHHSLMEFYTDTGLIDEYDIEVDYSNEEKNSTYGVTKEDLDEPNFWQEL
>NC_019765.1|WP_015211893.1|25053_25920_+|ThiF-family-adenylyltransferase
MHLARSILNARHIILPVYQQIEFYLVGCGGTGSWLAPSLCRLARYLTQRGKNTTLIFIDPDTVEEKNVLRQNFCDAEIGLSKAQTLALRYSLSWGVDIEGLPDSFNPEIVARDYYQREHKLKIIIGCVDNANARQSIARALSQYQSWHTRNVASELWWLDCGNHSHSGQVLIGSHLSPELDTYQFHQLGCIKLPAPCLQHPELLEPKPEELSQTNISCAELELLNTQSLTINQRMAAEAASYLIQLITGKLNRLATYLDLNSGFTTSTFITEEAIAKIINHAKALAKN
>NC_019765.1|WP_015211892.1|23648_24446_-|ParA-family-protein
MQTIAAVSLAGGQGKTTTCYFLAKMLAQAGKKVLAIDCDPQANLTFFLNHEVAPDRPTLLEVLKGTVSTEDGIYPTNDENLFLVPADSGLAKVTEYLSGSGTGALILQIRLQAVKELFDYVIIDVQPTRSQICLTAVGAADWVLIPAESATKGVNSLLDTQKFLAEQAQVMAFRGQILGIIPFRDRWVGRTQTLESRDNIAAMREFADDAPVLPTIRESEKFKQATRQGQLLSELGAKDLEYPFEKIIELLEDCKQLNQSIVVAV
>NC_019765.1|WP_041620467.1|22393_23401_-|RRXRR-domain-containing-protein
MYVPVVDKNQIPLMPTTSTRAKRWIKSGKATGFWKRGVFCVRLNIEPSNRNYQPIACGVDPGSKREGYTVKSKAHQYLNIQATTVDWVNEHLKTRREMRRARRFRKTPCRQPRANRLINKFCLPPSTKSRWQWKLRLCSWLSKMFPITTFVIEDIKAKTWGGKWGKSFSPLQVGKDWFYSELAKLAEVHTLQGMETKQIRDELGLKKTKNKLAETFEAHCVDSFALAYSVVGGNSLPKNTNLLIVVPLRFHRRQLHRLEHAPGAIRSPYGGTMSAGFKRGSLVKHPKYNLCFVGGSSKGRVSLHSVETGKRLCQNAKPQDIKFLTYNTWRTKYAN
>NC_019765.1|WP_015211890.1|21742_22276_-|hypothetical-protein
MNQDALERLRNRAKPTVQSRDLSTIPSVNKNEESSQKPEVSVIQEERVAKEAESLAYDRHNLKDISNSSNQDVEISSTTDALNAIPALDELSSPSMDIKTKQSTIRLEQKLSQKLSQKCQEEEISREVFLEALFVYFENHKSIQSKVLAEARQRDRQRQKIANYRRAKSMIERFGNE
>NC_019765.1|WP_150109184.1|20854_21589_+|hypothetical-protein
MESMFDSPLISGDVLREVIAKAPRNLDNLDAELLFIERNYIFHYLEGNRHVYKSLTPEVLRNAFANEPTDTDWLSKSVIRHGSGVSGNWIVCFFPQQRYSLQVGQEQFYLPLPSFVFMGIGSSYFLWAVKKNQFEPNLIVYHAPLPNIMADGRICWGNVYPTSVGLSNVEAVWSKFIGSVFNRDYTQGKSRKYKNNIIEQLKILNRKEKISSRCRYPVSDLVPVRNKLTVAQAVKAIIKNVDCG
>NC_019765.1|WP_015211888.1|20009_20882_+|hypothetical-protein
MNANTSVPKIATVEQAVDLLYQCLDLSTLGNAVEYLEQRELRYQLLFLYSHFFPQQYSQSKAAVYPGLDEDDGLIQYTEREIEFLQLVHRDLFPLNYLDYLLEEQIDFIEPRLILVTSLGLGQLEDYEMSYCDLALGDKILLPMTSVGRENLEHWQNHLGEDCYGEWFEAELSSPPTMAKIAHPHSIDFKKLRRMCFQAKKPICYLPLTLRLLDLNTNNIWLDEEGGWLQGMKGTTLDWSKENVIYLHREYLKAQRILDAAGSFIGWLEADLNNNFQSVLRLWNQCSTPH
>NC_019765.1|WP_041620464.1|19185_19533_-|transposase
MAGRFEGLNDLEWKLFEDILRTSQRRSRGMPPVPFRYVLNSLLYILITGCRWCDLPTGKQWASKSSAHRWLKRWQEDGTMEQLQSRILGIAQNQGMINWNYGAIDGSFSPWKRWR
>NC_019765.1|WP_015211897.1|35426_35702_-|CRISPR-associated-endonuclease-Cas2
MFVIVSYDISEDKRRTKIHDILSSYGQWMQYSLFECNLTKTEYAKLRSRLKKIINSDTDSIRFYFLCSCCQNKIERIGGELVRDDTIFFVE
>NC_019765.1|WP_015211898.1|35705_36713_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTVYITQEYNSFIGKTDERLTVKADKKKLLDVPLIKIDGLVIMGQATISPAIIKELLERKIPLSFVSATGKYEGCLQPELTKNIFIRKAQWLAAGETATAIHLVRGFVRGKLKNYRHLLMRRRREYPELNLDTAITKLEQAIAPIDLSNNIDSLRGLEGAGSAAYFGCFDRLIQNPNFNFKSRVRRPPTDPVNSLLSLGYSLLRHDLQSAVNIVGFDPYLGYLHYQRYGRPSLALDLMEEFRPLVVDAIVLNAINKEKLTPNDFTSEPISNAVSLTKEGLKVFLRLYEQKKQSVFKHPVLKRQCTYQEAFEIQARLIAKYLMEETDKYPPLILK
>NC_019765.1|WP_015211899.1|36754_37345_-|CRISPR-associated-protein-Cas4
MDREENYVPIAALNHYAYCPHRCGRMFCLGDFIDNHYTIEGTSLHERVHTISQENREYTWQIRAIWLKSEQYGLIGKSDLIESEKGELYPVEYKRGKRDDWSNDALQVCGQALCLEEMTGLSVTTGYVYYAHSHQRQEINIDRNLREKAIATIAEIQAMMITGKIPSPVYKPRCKGCSLYSCCLPQAANKVKRYQE
>NC_019765.1|WP_015211900.1|37350_38175_-|CRISPR-associated-endoribonuclease-Cas6
MPYSLVLNLLPLSPISPGYSQGKHLHALFLNIVSHCDRSLGDYLHEQKTNKAFTISPLQIVGNKNQKIQYQHNKPIPVNTPCWWRISLLDESLFGKLTQLWLNINPEKPWHLGNADLKISSILGTSQPNQPWSNAIPYARLYEEASANNNKFTFSFATPTTFGKGKQNDSLPTPENIFKSLCKRWNKYSNIEIPETELSLLSLFPSYFNIHTEMVSDYSKSKLIGCVGEISYQAFGNIDLQQIKYLNTLADFALYCGMGKKTTMGMGMVRRINN
>NC_019765.1|WP_015211901.1|38191_38896_-|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MTTIYRCQLELHDSLYFATREIGRLYETEPILHNYALCYALGLIDSKKYATNVAEEHSYRYFSAEQMPQYKQHLTPLNQQKIYVTPAKSLNHTSVLNTWKYANNNYHVEMEKTQKNIPSFGRAKEIAVESQFEFFIISESPLNFPQWKWIRLGKWMSKAQVIFEQLTSIKAHQGLFTCIHPLNPLDVMFTNQVFSYDVINMPPVSLIQNAQIQGQFYQIDNNLKIPVNMQYRFS
>NC_019765.1|WP_015211902.1|38973_39975_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MTFLKSIDAKYFHAEIPYKPMGKYAHFLTIRVTESYPLFQTDGELNKARVRAGITNQNPISRLTMFKRKQSTPERLIGRELLRNYGLVKPDECEYNVDFAKNNADCIIYGFAIGDGGSEKSKVVVDSAYSITSFDESHETFTLNAPYEHGTMSKNGEVTSRINQQDHIRPQVFFPSIVTLKDPTEASFLYVFNNILRTRHYGAQTTRTGRIRNELIGVIFADGEIVSNLRWTQAIYDKLGGKINSLDPLNEDEVDRAAKEAIEQLMSQEFIVHQDFIGDNFTPILNDVKTLTGSEENIKAILTKANQEAQNYFDNYITKSKDKDKDKKTAKSK
>NC_019765.1|WP_015211903.1|40057_43534_-|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MNIKQDKNISQQLSLFDETEIDLNDSNLFDDDFDLNFESSDRTIEIDSELLTLKLLRKAITAEHPEDLVMAYFAEYVLPNLLKFAIGVTAKGGKFFDRIDSERQAANKSRVRRDNAGDQSLNTHLLNGLFPAYLISRILEQADTTVKREFKKFRDIKQRILVSSFILHDFEKFDYNLFACIPNKYKDNNLDIRKLSIEEHREILSIIVTELSLDKFLTADLEEDEQWQDYLDDLLFIAYNTQVRYDTNLNLSEYGLNPKLKDRTLICLADLCCLADSLASIIKHPQDAEHDRLKGLIHNLSDGQLKFTYHRLAENRGVLTNVVNNALIQAHTDLNTEDNNYYQPLLYLPTGVIYLAAKDAPSISIADIPNRVISSIKQLCADRLMQSQTGFGRDGKGMKYADYYEQFFNIVGLMQVALRATLRILNDKKSSVAKSRSNNLVKFQQQGVLPTDYDFTFEDDIRCDRLAEFGDVVSRKIWGEKVNQIEAVIKALTDKEAEKLPDIDLIIEIAEYWNLKQYIPQIREIQNINQSLKELKLKGNTGGVPYEWYYLAAKYLQHNPGIEDVRETGEKLIEFIAGLIQPIVDKYELPDGWDDLRLWVNRIVMLPLPQPLSYKERGERQGEGSHTTAQVFLDELNNYQLAKKPGRGRQLICSISHSAYTVTEQMESAVLFTPQVYTNKQMLGGSNAKRNISSIAGVEMMLRQILMNNTQAVGKRFEDGKYRYLYFYPTYYFTPETNKFLTYAYANIAQTRFSSGVRNHFINNELQANFSKQRYQSVDAFLIDEDLQVKQNLPEDDPNYKKDYSFKLSYPDDLPLTFYFMALPPGRDSTDTESWVMPAWLAFAFPMILDVKTVVSESPIPPFTDGTEFEETVFLDSAPQAFKVLTKRDRFRLDYILEGWEEGDKNYPAPLNVLTAAYAIHLDVNAKQGKSGYNSNWGKLTELAKDLETSPLYVFNYLNQWVRRQNVDTARIEKIKLYAYHFYPCFDPYAQYNFTKQEWNMEKLAKSPLNHPLQLTELYRKFYRANKLYNPKANAVLKPIEIAADTILKAESTVFHGETLVHAVAAEVTKLMDRVHASTADGRWVFTNQERDKERQAILEFSRYFVEEVFEKSFAGDRARLAGKQINLIRDTCEFLYRLENDKDIEEKKKNNPDDSEE
>NC_019765.1|WP_015211904.1|43580_43760_-|DUF433-domain-containing-protein
MVNQQKLLERITVNPKIFRGKPIIRNRCLAVEYILGMLAAGDTKNILLNAYPWLEIEDI
>NC_019765.1|WP_015211905.1|44053_46234_-|type-I-D-CRISPR-associated-helicase-Cas3'
MKIYSIKLKPIYSCSALNIPKEIKLPDGWLLSWHQRETYLALNDPEVNVVINTGMTGDGKTLAGDLDVIFGDSLALKMYPTNELARDQEVSAREYLKQFELENKLRINRLSGQDLELYAEQEGIKKKTAIKTRADQSEIILTNPDILHYLHRGAYLTTYDNPDLLWNKIDKRFDLFVFDEFHVFSAPQIACIINTMLLIRHTNYRKKFLFLSATPDRDFIDRLVQAGFKVKVIDPVAENKYRFPTTQAEASELKKYNWREVSRQITLNFIALESGSTSSETWLKENSDRIIDLFIKYPGSKGAIILNSIAAVKRLVSYFAELLQPLGVNVGENTGLSGQYAKNQSLAADLVIGTSTIDVGVDFKINFLFFESADAGNFIQRLGRLGRHDGYEKDGEFIKFNNYIAYALVPNFLVERLFLKESAPLEVEQEYNRPFFHQVIRDEYRHINDFRGYYSRWGGVQSVKLCFQLGHPNIKARYKSDLKRLQQDCETVFNTSLKKTIGKIKGWEKEWKELSGNRSGNPIAEDASSFRGVSCLQCGLYDLTETNEADRYKTYGLPGILSNLEIETITKAEFDRLLAATSKKINTPIPKSRFNYCLGFMKLHRYREERLNWQFTYHGDLKDISEAYKVMVLTQIQVWQPENYWISQINKQLKKQALVSYVLPFAVAEIKNRLRLPMHFQIYPISDRTSIHDPSPLYSIAFGQSALLIDTLAHWLKSKGGKSWFI
>NC_019765.1|WP_015211907.1|46725_47646_+|WYL-domain-containing-protein
MSTKKETLTLSLAAGTKAKLEEIAHELGFFWGKSPSPSALVTAIANREIATGEPFYLSSDRIKALRQAIKVLIDTGYVTEAETIARLVLDKAQLEPTLRQELLRIVNTHLDKWRLVIDEYISNKQPFEILYTNSQGQELIFNVHFAQIDFHEKRFYLNIWCEETEDVSEDNKKYFPSLIHNRCLSFERIQGIIPKSGEWRESLDHIQVHLQFTGWMVKAYKPREEDIDDVIDEDAIPEPSSGARVVRGGVRKITRQVFNPFWLVREIKGYGRNCQIIAPSGLRNYFRQELIEICQQYDIETNFPVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019765_1	1.1\|31976\|33\|NC_019765\|CRT	31976-32008	33	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	31976-32008	0	1.0
NC_019765_1	1.2\|32046\|35\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32046-32080	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32046-32080	0	1.0
NC_019765_1	1.3\|32118\|35\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32118-32152	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32118-32152	0	1.0
NC_019765_1	1.4\|32190\|39\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32190-32228	39	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32190-32228	0	1.0
NC_019765_1	1.5\|32266\|36\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32266-32301	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32266-32301	0	1.0
NC_019765_1	1.6\|32339\|36\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32339-32374	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32339-32374	0	1.0
NC_019765_1	1.7\|32412\|35\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32412-32446	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32412-32446	0	1.0
NC_019765_1	1.8\|32484\|36\|NC_019765\|CRT,CRISPRCasFinder	32484-32519	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32484-32519	0	1.0
NC_019765_2	2.1\|32629\|33\|NC_019765\|CRT	32629-32661	33	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32629-32661	0	1.0
NC_019765_2	2.2\|32699\|38\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32699-32736	38	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32699-32736	0	1.0
NC_019765_2	2.3\|32774\|34\|NC_019765\|CRT,PILER-CR,CRISPRCasFinder	32774-32807	34	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32774-32807	0	1.0
NC_019765_2	2.4\|32845\|40\|NC_019765\|CRT,CRISPRCasFinder	32845-32884	40	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32845-32884	0	1.0
NC_019765_2	2.5\|32922\|37\|NC_019765\|CRT,CRISPRCasFinder	32922-32958	37	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32922-32958	0	1.0
NC_019765_2	2.6\|32996\|40\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	32996-33035	40	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32996-33035	0	1.0
NC_019765_2	2.7\|33073\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33073-33108	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33073-33108	0	1.0
NC_019765_2	2.8\|33146\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33146-33180	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33146-33180	0	1.0
NC_019765_2	2.9\|33218\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33218-33251	34	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33218-33251	0	1.0
NC_019765_2	2.10\|33289\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33289-33322	34	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33289-33322	0	1.0
NC_019765_2	2.11\|33360\|40\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33360-33399	40	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33360-33399	0	1.0
NC_019765_2	2.12\|33437\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33437-33472	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33437-33472	0	1.0
NC_019765_2	2.13\|33510\|42\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33510-33551	42	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33510-33551	0	1.0
NC_019765_2	2.14\|33589\|35\|NC_019765\|CRT,CRISPRCasFinder	33589-33623	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33589-33623	0	1.0
NC_019765_2	2.15\|33661\|33\|NC_019765\|CRT,CRISPRCasFinder	33661-33693	33	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33661-33693	0	1.0
NC_019765_2	2.16\|33731\|37\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33731-33767	37	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33731-33767	0	1.0
NC_019765_2	2.17\|33805\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33805-33839	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33805-33839	0	1.0
NC_019765_2	2.18\|33877\|37\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33877-33913	37	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33877-33913	0	1.0
NC_019765_2	2.19\|33951\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33951-33984	34	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	33951-33984	0	1.0
NC_019765_2	2.20\|34022\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34022-34055	34	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34022-34055	0	1.0
NC_019765_2	2.21\|34093\|37\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34093-34129	37	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34093-34129	0	1.0
NC_019765_2	2.22\|34167\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34167-34201	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34167-34201	0	1.0
NC_019765_2	2.23\|34239\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34239-34273	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34239-34273	0	1.0
NC_019765_2	2.24\|34311\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34311-34345	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34311-34345	0	1.0
NC_019765_2	2.25\|34383\|38\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34383-34420	38	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34383-34420	0	1.0
NC_019765_2	2.26\|34458\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34458-34492	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34458-34492	0	1.0
NC_019765_2	2.27\|34530\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34530-34564	35	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34530-34564	0	1.0
NC_019765_2	2.28\|34602\|41\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34602-34642	41	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34602-34642	0	1.0
NC_019765_2	2.29\|34680\|37\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34680-34716	37	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34680-34716	0	1.0
NC_019765_2	2.30\|34754\|38\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34754-34791	38	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34754-34791	0	1.0
NC_019765_2	2.31\|34829\|33\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34829-34861	33	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34829-34861	0	1.0
NC_019765_2	2.32\|34899\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34899-34934	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34899-34934	0	1.0
NC_019765_2	2.33\|34972\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34972-35007	36	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	34972-35007	0	1.0
NC_019765_2	2.34\|35045\|37\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	35045-35081	37	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	35045-35081	0	1.0
NC_019765_2	2.35\|35119\|38\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	35119-35156	38	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	35119-35156	0	1.0
NC_019765_2	2.1\|32629\|33\|NC_019765\|CRT	32629-32661	33	NC_019765	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence	32559-32591	6	0.818
NC_019765_2	2.10\|33289\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33289-33322	34	MW084976	Bacillus phage Kirov, complete genome	100093-100126	8	0.765
NC_019765_2	2.10\|33289\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33289-33322	34	MK448933	Streptococcus phage Javan420, complete genome	28980-29013	8	0.765
NC_019765_2	2.23\|34239\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34239-34273	35	AP014044	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12-MedDCM-OCT-S24-C146, * SEQUENCING IN PROGRESS *	1903-1937	8	0.771
NC_019765_2	2.23\|34239\|35\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	34239-34273	35	AP014047	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12-MedDCM-OCT-S39-C144, * SEQUENCING IN PROGRESS *	5416-5450	8	0.771
NC_019765_2	2.9\|33218\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33218-33251	34	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1533128-1533161	9	0.735
NC_019765_2	2.10\|33289\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33289-33322	34	KT070867	Bacillus phage PBC2, complete genome	65912-65945	9	0.735
NC_019765_2	2.12\|33437\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33437-33472	36	NC_018265	Melissococcus plutonius DAT561 plasmid 1, complete sequence	190958-190993	9	0.75
NC_019765_2	2.12\|33437\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33437-33472	36	NZ_CP006684	Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence	8074-8109	9	0.75
NC_019765_2	2.12\|33437\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33437-33472	36	NZ_AP021886	Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence	8074-8109	9	0.75
NC_019765_2	2.12\|33437\|36\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33437-33472	36	NZ_AP018525	Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence	8090-8125	9	0.75
NC_019765_2	2.19\|33951\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33951-33984	34	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	44252-44285	10	0.706
NC_019765_2	2.19\|33951\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33951-33984	34	MT774395	CrAssphage cr52_1, complete genome	86560-86593	11	0.676
NC_019765_2	2.19\|33951\|34\|NC_019765\|CRT,CRISPRCasFinder,PILER-CR	33951-33984	34	MT774403	CrAssphage cr113_1, complete genome	2475-2508	11	0.676

1. spacer 1.1|31976|33|NC_019765|CRT matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaaactttcgtagaagctgagaatcgtaata	CRISPR spacer
ttgaaactttcgtagaagctgagaatcgtaata	Protospacer
*********************************

2. spacer 1.2|32046|35|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttttatcttttctcaatcaattgataaaggtcgta	CRISPR spacer
ttttatcttttctcaatcaattgataaaggtcgta	Protospacer
***********************************

3. spacer 1.3|32118|35|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

aatgagtttaaagatttgcttatggcgcaagtttg	CRISPR spacer
aatgagtttaaagatttgcttatggcgcaagtttg	Protospacer
***********************************

4. spacer 1.4|32190|39|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

atagatggaaattcctctttcttcggaaaaaattatcga	CRISPR spacer
atagatggaaattcctctttcttcggaaaaaattatcga	Protospacer
***************************************

5. spacer 1.5|32266|36|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

attgtttctcagcaaacgtaattggttgccagtcat	CRISPR spacer
attgtttctcagcaaacgtaattggttgccagtcat	Protospacer
************************************

6. spacer 1.6|32339|36|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gtgctacgttcgtaaacttgcgtttcaaaagtccct	CRISPR spacer
gtgctacgttcgtaaacttgcgtttcaaaagtccct	Protospacer
************************************

7. spacer 1.7|32412|35|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gtgagggaattgatatgtttgctcgtaaaggtgat	CRISPR spacer
gtgagggaattgatatgtttgctcgtaaaggtgat	Protospacer
***********************************

8. spacer 1.8|32484|36|NC_019765|CRT,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

caatccccccttcgtcgaggagcaatacagagttag	CRISPR spacer
caatccccccttcgtcgaggagcaatacagagttag	Protospacer
************************************

9. spacer 2.1|32629|33|NC_019765|CRT matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tattctgggtattatgttattgaggataaataa	CRISPR spacer
tattctgggtattatgttattgaggataaataa	Protospacer
*********************************

10. spacer 2.2|32699|38|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

agttcgtcgtgcaactaaggtgcagaaataatggaatt	CRISPR spacer
agttcgtcgtgcaactaaggtgcagaaataatggaatt	Protospacer
**************************************

11. spacer 2.3|32774|34|NC_019765|CRT,PILER-CR,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ccattagcagcaaaccaattcaaaccacgaagac	CRISPR spacer
ccattagcagcaaaccaattcaaaccacgaagac	Protospacer
**********************************

12. spacer 2.4|32845|40|NC_019765|CRT,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gttttaagctcttcaatagtttcatcaatttgctctttat	CRISPR spacer
gttttaagctcttcaatagtttcatcaatttgctctttat	Protospacer
****************************************

13. spacer 2.5|32922|37|NC_019765|CRT,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

atttataacgattgtttgcaatatggcgtaggtaaag	CRISPR spacer
atttataacgattgtttgcaatatggcgtaggtaaag	Protospacer
*************************************

14. spacer 2.6|32996|40|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

acttaaacgaatccgaccccgtaaaagttgacctgtcctt	CRISPR spacer
acttaaacgaatccgaccccgtaaaagttgacctgtcctt	Protospacer
****************************************

15. spacer 2.7|33073|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

aaatttggcgatcgctcgataaaaagtagctgaaga	CRISPR spacer
aaatttggcgatcgctcgataaaaagtagctgaaga	Protospacer
************************************

16. spacer 2.8|33146|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttgatggaatggttcggagtcgaattttttctgat	CRISPR spacer
ttgatggaatggttcggagtcgaattttttctgat	Protospacer
***********************************

17. spacer 2.9|33218|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

aaatttgcccgtgttcgagcgtctgtccaatcca	CRISPR spacer
aaatttgcccgtgttcgagcgtctgtccaatcca	Protospacer
**********************************

18. spacer 2.10|33289|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

atagttctcgcttctgcttcgattttttgaattt	CRISPR spacer
atagttctcgcttctgcttcgattttttgaattt	Protospacer
**********************************

19. spacer 2.11|33360|40|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

actgctggtcgtattgctttccataattggtcacaggcta	CRISPR spacer
actgctggtcgtattgctttccataattggtcacaggcta	Protospacer
****************************************

20. spacer 2.12|33437|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

taataaaaatctagatcaagatgatttaaatgtact	CRISPR spacer
taataaaaatctagatcaagatgatttaaatgtact	Protospacer
************************************

21. spacer 2.13|33510|42|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gtaggtagcaagatttgatcgacttcggggttggcgttgata	CRISPR spacer
gtaggtagcaagatttgatcgacttcggggttggcgttgata	Protospacer
******************************************

22. spacer 2.14|33589|35|NC_019765|CRT,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttagagagaatttagattacaatcgcaatctttta	CRISPR spacer
ttagagagaatttagattacaatcgcaatctttta	Protospacer
***********************************

23. spacer 2.15|33661|33|NC_019765|CRT,CRISPRCasFinder matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tatcttccgtcgatcgcgatttgagttcttttg	CRISPR spacer
tatcttccgtcgatcgcgatttgagttcttttg	Protospacer
*********************************

24. spacer 2.16|33731|37|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

atcggctgcatctaatgcaggtgcagcactcctggct	CRISPR spacer
atcggctgcatctaatgcaggtgcagcactcctggct	Protospacer
*************************************

25. spacer 2.17|33805|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

cgattcaaaagtaaatacctcagaatactttattt	CRISPR spacer
cgattcaaaagtaaatacctcagaatactttattt	Protospacer
***********************************

26. spacer 2.18|33877|37|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gtaagtactgagcgaacattttacttagttcttcttt	CRISPR spacer
gtaagtactgagcgaacattttacttagttcttcttt	Protospacer
*************************************

27. spacer 2.19|33951|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttcaagatttatttgaagatgttactgattctaa	CRISPR spacer
ttcaagatttatttgaagatgttactgattctaa	Protospacer
**********************************

28. spacer 2.20|34022|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

agtggagaatgaaactaaagtagcttggtatgct	CRISPR spacer
agtggagaatgaaactaaagtagcttggtatgct	Protospacer
**********************************

29. spacer 2.21|34093|37|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gtagtacatactcagtagtaccatcatcggcggtata	CRISPR spacer
gtagtacatactcagtagtaccatcatcggcggtata	Protospacer
*************************************

30. spacer 2.22|34167|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttaataactggaaaaatattaaagggtttaactac	CRISPR spacer
ttaataactggaaaaatattaaagggtttaactac	Protospacer
***********************************

31. spacer 2.23|34239|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ttgaaaatatatattttctccttcttcccaatttt	CRISPR spacer
ttgaaaatatatattttctccttcttcccaatttt	Protospacer
***********************************

32. spacer 2.24|34311|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ctatcccagttatctttttgatcaaaccaatcaat	CRISPR spacer
ctatcccagttatctttttgatcaaaccaatcaat	Protospacer
***********************************

33. spacer 2.25|34383|38|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

ccagaaaaataagctagatttgctattgtatatttagt	CRISPR spacer
ccagaaaaataagctagatttgctattgtatatttagt	Protospacer
**************************************

34. spacer 2.26|34458|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

catttgagaattagagagagcaagagcaatagatc	CRISPR spacer
catttgagaattagagagagcaagagcaatagatc	Protospacer
***********************************

35. spacer 2.27|34530|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tggaaactacagcaccagtagaactacaagcttct	CRISPR spacer
tggaaactacagcaccagtagaactacaagcttct	Protospacer
***********************************

36. spacer 2.28|34602|41|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tagacagatcgattaaattttgaactgttttaattgcggcc	CRISPR spacer
tagacagatcgattaaattttgaactgttttaattgcggcc	Protospacer
*****************************************

37. spacer 2.29|34680|37|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tcaagtcttaccacagcagcttgagccgtatccgcag	CRISPR spacer
tcaagtcttaccacagcagcttgagccgtatccgcag	Protospacer
*************************************

38. spacer 2.30|34754|38|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

acaaagtagttgattatttagaaattgattttactttt	CRISPR spacer
acaaagtagttgattatttagaaattgattttactttt	Protospacer
**************************************

39. spacer 2.31|34829|33|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

gattttttcaatggctggctgtagctttttgag	CRISPR spacer
gattttttcaatggctggctgtagctttttgag	Protospacer
*********************************

40. spacer 2.32|34899|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tatttcattcaatgggcgcactactccaccagaaat	CRISPR spacer
tatttcattcaatgggcgcactactccaccagaaat	Protospacer
************************************

41. spacer 2.33|34972|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

acatggtaattcaaccgttgccgtatcattggaagt	CRISPR spacer
acatggtaattcaaccgttgccgtatcattggaagt	Protospacer
************************************

42. spacer 2.34|35045|37|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

tagctgaaactttagcagaattatggggagcaatttt	CRISPR spacer
tagctgaaactttagcagaattatggggagcaatttt	Protospacer
*************************************

43. spacer 2.35|35119|38|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 0, identity: 1.0

taatcaagttgtaaataaagattagttgtagttcccaa	CRISPR spacer
taatcaagttgtaaataaagattagttgtagttcccaa	Protospacer
**************************************

44. spacer 2.1|32629|33|NC_019765|CRT matches to NC_019765 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.01, complete sequence) position: , mismatch: 6, identity: 0.818

tattctgggtattatgttattgaggataaataa	CRISPR spacer
ttgataaggtattatgttattgaggataaataa	Protospacer
*   . .**************************

45. spacer 2.10|33289|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 8, identity: 0.765

-atagttctcgcttctgcttcgattttttgaattt	CRISPR spacer
tgtaa-gcgtgcttctgcttcgattttttggatta	Protospacer
 .**.  * .********************.***

46. spacer 2.10|33289|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 8, identity: 0.765

atagttctcgcttctgcttcgattttttgaattt	CRISPR spacer
atttatttggctactgcttcgattttttgatttc	Protospacer
**   *.* *** ***************** **.

47. spacer 2.23|34239|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to AP014044 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12-MedDCM-OCT-S24-C146, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.771

ttgaaaatatatattttctccttcttcccaatttt	CRISPR spacer
atctaaatacatattttctcctttttcccaccatt	Protospacer
 *  *****.*************.****** . **

48. spacer 2.23|34239|35|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to AP014047 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12-MedDCM-OCT-S39-C144, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.771

ttgaaaatatatattttctccttcttcccaatttt	CRISPR spacer
atctaaatacatattttctcctttttcccaccatt	Protospacer
 *  *****.*************.****** . **

49. spacer 2.9|33218|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 9, identity: 0.735

aaatttgcccgtgttcgagcgtctgtccaatcca	CRISPR spacer
caatttgcccgtgttcgggcggctgagccatggc	Protospacer
 ****************.*** ***  * **

50. spacer 2.10|33289|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 9, identity: 0.735

atagttctcgcttctgcttcgattttttgaattt	CRISPR spacer
ttcaagcgtgcttctgcttcgattttttggatta	Protospacer
 * .  * .********************.***

51. spacer 2.12|33437|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.75

taataaaaatctagatcaagatgattt-aaatgtact	CRISPR spacer
ataaaaaaatctagattaatatgatttaaaatacat-	Protospacer
  * ************.** ******* ****..*.

52. spacer 2.12|33437|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP006684 (Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence) position: , mismatch: 9, identity: 0.75

taataaaaatctagatcaagatgattt-aaatgtact	CRISPR spacer
ataaaaaaatctagattaatatgatttaaaatacat-	Protospacer
  * ************.** ******* ****..*.

53. spacer 2.12|33437|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP021886 (Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence) position: , mismatch: 9, identity: 0.75

taataaaaatctagatcaagatgattt-aaatgtact	CRISPR spacer
ataaaaaaatctagattaatatgatttaaaatacat-	Protospacer
  * ************.** ******* ****..*.

54. spacer 2.12|33437|36|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP018525 (Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence) position: , mismatch: 9, identity: 0.75

taataaaaatctagatcaagatgattt-aaatgtact	CRISPR spacer
ataaaaaaatctagattaatatgatttaaaatacat-	Protospacer
  * ************.** ******* ****..*.

55. spacer 2.19|33951|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 10, identity: 0.706

ttcaagatttatttgaagatgttactgattctaa	CRISPR spacer
cagaagatttatttgaagttgctactgcacttga	Protospacer
.  *************** **.*****  ..*.*

56. spacer 2.19|33951|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to MT774395 (CrAssphage cr52_1, complete genome) position: , mismatch: 11, identity: 0.676

ttcaagatttatttgaagatgttactgattctaa	CRISPR spacer
aggaagatttattagaacatgttactggacacta	Protospacer
   ********** *** *********. . . *

57. spacer 2.19|33951|34|NC_019765|CRT,CRISPRCasFinder,PILER-CR matches to MT774403 (CrAssphage cr113_1, complete genome) position: , mismatch: 11, identity: 0.676

ttcaagatttatttgaagatgttactgattctaa	CRISPR spacer
aggaagatttattagaacatgttactggacacta	Protospacer
   ********** *** *********. . . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12994 : 132427

110

Microcystis_virus(21.74%)

protease,transposase,integrase

attL 12909:12968|attR 130621:132501

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
12909:12968	attL	NA	NA	NA	NA
WP_015211881.1\|12994_14110_-\|transposase	transposase	A0A7P9	Microcystis_virus	6.1e-97	51.1
WP_015211882.1\|14106_14715_-\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	1.3e-69	66.2
WP_015211883.1\|15001_15463_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_015211884.1\|15462_15954_+	hypothetical protein	NA	NA	NA	NA
WP_015211885.1\|15979_16621_+	hypothetical protein	NA	NA	NA	NA
WP_041620429.1\|16801_17752_+\|integrase	tyrosine-type recombinase/integrase	S5Y1V3	Mycobacterium_phage	3.5e-13	26.0
WP_150109183.1\|17862_18702_+	hypothetical protein	NA	NA	NA	NA
WP_083856894.1\|18776_19220_-\|transposase	transposase	NA	NA	NA	NA
WP_041620464.1\|19185_19533_-\|transposase	transposase	NA	NA	NA	NA
WP_015211888.1\|20009_20882_+	hypothetical protein	NA	NA	NA	NA
WP_150109184.1\|20854_21589_+	hypothetical protein	NA	NA	NA	NA
WP_015211890.1\|21742_22276_-	hypothetical protein	NA	NA	NA	NA
WP_041620467.1\|22393_23401_-	RRXRR domain-containing protein	A0A7T5	Microcystis_virus	2.8e-40	37.5
WP_015211892.1\|23648_24446_-	ParA family protein	A0A240F4U1	Ochrobactrum_phage	2.0e-09	31.9
WP_015211893.1\|25053_25920_+	ThiF family adenylyltransferase	A0A1P8DIW3	Virus_Rctr197k	1.9e-05	29.5
WP_015211894.1\|25897_26134_-	hypothetical protein	NA	NA	NA	NA
WP_015211895.1\|26326_29977_+	hypothetical protein	NA	NA	NA	NA
WP_015211896.1\|30093_31926_+	hypothetical protein	NA	NA	NA	NA
WP_015211897.1\|35426_35702_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_015211898.1\|35705_36713_-	type I-D CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_015211899.1\|36754_37345_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_015211900.1\|37350_38175_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_015211901.1\|38191_38896_-	type I-D CRISPR-associated protein Cas5/Csc1	NA	NA	NA	NA
WP_015211902.1\|38973_39975_-	type I-D CRISPR-associated protein Cas7/Csc2	NA	NA	NA	NA
WP_015211903.1\|40057_43534_-	type I-D CRISPR-associated protein Cas10d/Csc3	NA	NA	NA	NA
WP_015211904.1\|43580_43760_-	DUF433 domain-containing protein	NA	NA	NA	NA
WP_015211905.1\|44053_46234_-	type I-D CRISPR-associated helicase Cas3'	NA	NA	NA	NA
WP_015211907.1\|46725_47646_+	WYL domain-containing protein	NA	NA	NA	NA
WP_015211908.1\|47832_48432_+	hypothetical protein	NA	NA	NA	NA
WP_015211909.1\|48477_51681_+	hypothetical protein	NA	NA	NA	NA
WP_015211910.1\|51743_52631_+	hypothetical protein	NA	NA	NA	NA
WP_015211911.1\|52636_53737_+	hypothetical protein	NA	NA	NA	NA
WP_015211912.1\|53757_54468_+	hypothetical protein	NA	NA	NA	NA
WP_015211913.1\|54473_55910_+	hypothetical protein	NA	NA	NA	NA
WP_015211914.1\|56086_57028_-	vanadium-dependent haloperoxidase	NA	NA	NA	NA
WP_041620431.1\|57346_59761_+	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	3.0e-08	38.7
WP_015211916.1\|59730_60171_+	hypothetical protein	NA	NA	NA	NA
WP_015211917.1\|60351_61188_-	hypothetical protein	NA	NA	NA	NA
WP_015211918.1\|61341_61551_+	hypothetical protein	NA	NA	NA	NA
WP_015211919.1\|64578_65115_+	hypothetical protein	NA	NA	NA	NA
WP_171815485.1\|65311_65467_+	hypothetical protein	NA	NA	NA	NA
WP_041620432.1\|65474_65666_-	hypothetical protein	NA	NA	NA	NA
WP_015211920.1\|66186_66837_+	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	1.7e-19	41.7
WP_015211921.1\|66889_67249_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015211922.1\|67245_67590_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015211923.1\|67700_68864_+	hypothetical protein	NA	NA	NA	NA
WP_015211924.1\|68935_70363_+	AAA family ATPase	A0A2I6PHX5	Pseudomonas_phage	7.2e-34	30.2
WP_015211925.1\|70803_72192_+	DNA polymerase III subunit beta	NA	NA	NA	NA
WP_015211926.1\|72196_72715_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015194566.1\|72969_74283_-	replicative DNA helicase	G9BWB0	Planktothrix_phage	2.0e-78	43.8
WP_015194567.1\|74275_75112_-	hypothetical protein	NA	NA	NA	NA
WP_015194568.1\|75111_76785_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015194993.1\|76785_77880_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	1.4e-13	29.7
WP_015211927.1\|77974_79141_-\|transposase	transposase	Q19ZT4	Mycobacterium_virus	3.9e-14	25.3
WP_015211928.1\|79172_79580_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.3e-25	44.5
WP_015211929.1\|79746_80037_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_041620434.1\|80071_80410_-	hypothetical protein	NA	NA	NA	NA
WP_015211930.1\|80440_80653_-	hypothetical protein	NA	NA	NA	NA
WP_015211931.1\|80695_82081_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	4.6e-46	35.2
WP_015211932.1\|82077_83043_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_015211933.1\|83226_83697_+	hypothetical protein	NA	NA	NA	NA
WP_015211934.1\|83693_84362_+	hypothetical protein	NA	NA	NA	NA
WP_015211935.1\|84455_85091_+	hypothetical protein	NA	NA	NA	NA
WP_015211936.1\|85397_85880_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_150109194.1\|86012_86687_+	response regulator	NA	NA	NA	NA
WP_015211938.1\|86710_88645_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_015211939.1\|88773_89706_+	hypothetical protein	NA	NA	NA	NA
WP_015211940.1\|90044_91970_+	DNA-directed DNA polymerase	A0A2H4KIR4	Gemmata_phage	1.3e-35	27.2
WP_015211941.1\|92063_92330_+	CopG family protein	NA	NA	NA	NA
WP_015211942.1\|92334_92682_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_150109185.1\|92708_93722_-	hypothetical protein	NA	NA	NA	NA
WP_041620436.1\|93812_94046_+	hypothetical protein	NA	NA	NA	NA
WP_015211945.1\|94273_94930_-	hypothetical protein	NA	NA	NA	NA
WP_015211946.1\|95019_95361_-	hypothetical protein	NA	NA	NA	NA
WP_015211947.1\|95401_97150_-	VWA domain-containing protein	NA	NA	NA	NA
WP_015211948.1\|97279_97636_-	hypothetical protein	NA	NA	NA	NA
WP_015211949.1\|97820_98606_-	SPFH domain, Band 7 family protein	A0A2K9L3L2	Tupanvirus	1.5e-17	25.1
WP_015211950.1\|98726_99617_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_015211951.1\|99818_101204_+	GUN4 domain-containing protein	M1HY05	Paramecium_bursaria_Chlorella_virus	2.2e-11	27.3
WP_015211952.1\|101205_101763_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015194629.1\|101842_103075_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	2.3e-121	60.7
WP_015211953.1\|103124_103889_-	FHA domain-containing protein	NA	NA	NA	NA
WP_015211954.1\|104158_105289_+\|protease	serine protease	A0A1B1IRH0	uncultured_Mediterranean_phage	2.6e-10	34.8
WP_015211955.1\|105322_105880_+	hypothetical protein	NA	NA	NA	NA
WP_015211956.1\|106098_109302_+\|protease	serine protease	NA	NA	NA	NA
WP_041620440.1\|109515_109752_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015211958.1\|109771_109969_+	hypothetical protein	NA	NA	NA	NA
WP_083856895.1\|110097_110292_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015211959.1\|110273_110585_+	nucleotidyltransferase	NA	NA	NA	NA
WP_015211960.1\|110617_111283_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015211961.1\|111290_111947_-	hypothetical protein	NA	NA	NA	NA
WP_015211962.1\|112017_113253_-	hypothetical protein	NA	NA	NA	NA
WP_015211963.1\|113724_114246_-	NADAR family protein	A0A141ZK81	Faustovirus	1.8e-22	41.3
WP_150109195.1\|114354_115791_-	hypothetical protein	NA	NA	NA	NA
WP_171815486.1\|116042_117572_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015211966.1\|117575_119327_-	hypothetical protein	NA	NA	NA	NA
WP_015211967.1\|119338_120535_-	DUF1822 family protein	NA	NA	NA	NA
WP_041620442.1\|120614_122159_-	hypothetical protein	NA	NA	NA	NA
WP_015211969.1\|122326_122644_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_015211970.1\|122633_123359_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_015211973.1\|124481_125168_-	hypothetical protein	NA	NA	NA	NA
WP_015211974.1\|125367_125634_-	hypothetical protein	NA	NA	NA	NA
WP_015211975.1\|125807_126020_+	hypothetical protein	NA	NA	NA	NA
WP_015211976.1\|126024_126333_+	hypothetical protein	NA	NA	NA	NA
WP_015211977.1\|126332_126758_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_015211978.1\|127048_128656_-	ATP-binding protein	U5XJW0	Phormidium_phage	9.5e-27	29.9
WP_015211979.1\|128822_129434_+	hypothetical protein	NA	NA	NA	NA
WP_015211980.1\|129526_130462_+	SprT-like domain-containing protein	NA	NA	NA	NA
WP_015211881.1\|130706_131822_-\|transposase	transposase	A0A7P9	Microcystis_virus	6.1e-97	51.1
WP_015211882.1\|131818_132427_-\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	1.3e-69	66.2
130621:132501	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019748

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_019765

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection