CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018829	Bordetella bronchiseptica MO149, complete genome	9 crisprs	csa3,DEDDh,DinG,cas3	1	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_018829_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_1

269215-269314

Orphan

Consensus_repeat	Method
GACAGGCACCTGCCGAATCCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_1

>merge|NC_018829|1|269215-269314|CRISPRCasFinder
GACAGGCACCTGCCGAATCCTGGTCCTTCCCGCGAGGACAGGCACCTGCCGAATCCTGGGTGCCTGTCCCCCGCGGAGACAGGCACCTGCCGAACCCTGG

>NC_018829|1|1|269215-269314|CRISPRCasFinder
GACAGGCACCTGCCGAATCCTGG	TCCTTCCCGCGAGGACAGGCACCTGCCGAATCCTGGGTGCCTGTCCCCCGCGGA
GACAGGCACCTGCCGAACCCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_015040864.1\|267520_268552_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225191
NC_018829.1\|WP_015040863.1\|263937_264588_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133025
NC_018829.1\|WP_003807390.1\|273235_274339_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270400
NC_018829.1\|WP_003807374.1\|266671_267493_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_018829.1\|WP_004566017.1\|277576_278764_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224991
NC_018829.1\|WP_004566019.1\|279823_280612_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_018829.1\|WP_003816295.1\|274368_276747_+\|xanthine-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|376913
NC_018829.1\|WP_003818499.1\|260769_262239_+\|potassium-transporter-Trk	unknown	unknown	gnl\|CDD\|182698
NC_018829.1\|WP_015040865.1\|271189_272452_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NC_018829.1\|WP_003816293.1\|269334_269850_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|238357
NC_018829.1\|WP_003807389.1\|272454_272766_-\|non-heme-iron-oxygenase-ferredoxin-subunit	unknown	unknown	gnl\|CDD\|239604
NC_018829.1\|WP_003807341.1\|262318_262852_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_018829.1\|WP_010929890.1\|264911_265874_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NC_018829.1\|WP_003816292.1\|268567_269185_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NC_018829.1\|WP_004566018.1\|278798_279827_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NC_018829.1\|WP_003807394.1\|276743_277580_+\|FAD-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366378
NC_018829.1\|WP_015040862.1\|262859_263855_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NC_018829.1\|WP_003807385.1\|269864_271154_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|176889
NC_018829.1\|WP_003818498.1\|259341_260721_+\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NC_018829.1\|WP_010929891.1\|265899_266652_+\|maleate-isomerase	unknown	unknown	gnl\|CDD\|226004

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_015040864.1\|267520_268552_+\|hypothetical-protein	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	5.11144e-07
NC_018829.1\|WP_015040863.1\|263937_264588_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.41163e-53
NC_018829.1\|WP_003807390.1\|273235_274339_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270400	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold. This subgroup includes TRAP transporters that bind to ketoacids such as pyruvate and alpha-ketobutyrate, xylulose, and other unknown ligands. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_018829.1\|WP_003807374.1\|266671_267493_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.52244e-19
NC_018829.1\|WP_004566017.1\|277576_278764_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	3.78774e-60
NC_018829.1\|WP_004566019.1\|279823_280612_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.37649e-110
NC_018829.1\|WP_003816295.1\|274368_276747_+\|xanthine-dehydrogenase-family-protein	gnl\|CDD\|376913	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase.	4.8238e-180
NC_018829.1\|WP_003818499.1\|260769_262239_+\|potassium-transporter-Trk	gnl\|CDD\|182698	PRK10750, PRK10750, Trk system potassium transporter TrkH.	4.1092e-135
NC_018829.1\|WP_015040865.1\|271189_272452_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.13061e-99
NC_018829.1\|WP_003816293.1\|269334_269850_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|238357	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.	9.4455e-29
NC_018829.1\|WP_003807389.1\|272454_272766_-\|non-heme-iron-oxygenase-ferredoxin-subunit	gnl\|CDD\|239604	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.	1.64156e-51
NC_018829.1\|WP_003807341.1\|262318_262852_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.90133e-16
NC_018829.1\|WP_010929890.1\|264911_265874_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.78877e-56
NC_018829.1\|WP_003816292.1\|268567_269185_+\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	5.88155e-78
NC_018829.1\|WP_004566018.1\|278798_279827_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	2.55416e-37
NC_018829.1\|WP_003807394.1\|276743_277580_+\|FAD-binding-domain-containing-protein	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	1.61432e-57
NC_018829.1\|WP_015040862.1\|262859_263855_-\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	8.86579e-63
NC_018829.1\|WP_003807385.1\|269864_271154_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|176889	cd08880, RHO_alpha_C_ahdA1c-like, C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Other oxygenases belonging to this subgroup include the alpha subunits of anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1, a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5 (PhnA dioxygenase), salicylate-5-hydroxylase from Ralstonia sp. U2, ortho-halobenzoate 1,2-dioxygenase from Pseudomonas aeruginosa strain JB2, and the terephthalate 1,2-dioxygenase system from Delftia tsuruhatensis strain T7. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	7.36742e-125
NC_018829.1\|WP_003818498.1\|259341_260721_+\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	0
NC_018829.1\|WP_010929891.1\|265899_266652_+\|maleate-isomerase	gnl\|CDD\|226004	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism].	1.92629e-83

>NC_018829.1|WP_003816292.1|268567_269185_+|isochorismatase-family-protein
MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNIAGAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGFRPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK
>NC_018829.1|WP_015040864.1|267520_268552_+|hypothetical-protein
MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALVAAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTPLTGNKAAIAMLKASDLVLDLMTLLFSPEQHEILQGGTRILLAVEPPEVLARLVPTEEDRRRVKAAAGRIAGAREMTVESEAGTRLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSYVSEPIVLTVENGYATRIEGGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGLYDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHIDIPLRRCTVRLDGREVVREGKVLD
>NC_018829.1|WP_003807374.1|266671_267493_+|alpha/beta-hydrolase
MSNFRYGGNVQANGIRQHYLRYGGERAGRDPVIIVPGITSPAVTWGFVGERFGEQFDTYILDVRGRGLSQSGPQLDYGLDAQAEDLLAFARALGLSRYSVVGHSMGARIGIRAARTGEAGLARLAMVDPPVSGPGRRAYPSKLPWYVDSMAQARQGMTGEQMKAYCPSWTAEQLQLRAEWLHTCEERAVIASFEGFHEDDVHADLPRVRAARLLMTAERGEVVLDADVAEIEALAPGTAHVRVAGAGHMIPWDNEEGFYAAFGDFLGARLRAG
>NC_018829.1|WP_010929891.1|265899_266652_+|maleate-isomerase
MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMRMKKVVKEELAAMDAESDRCAVELSDARVDVLGYACLVAIMAMGRGYHRQSQARLTAHTAANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYRALEIADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAAVATTYAMLKALGLEAVVPGAGALLSGAY
>NC_018829.1|WP_010929890.1|264911_265874_+|amidohydrolase
MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFGAGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALRRARENNDFLAERIARHPDRFGGFATLPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDDPAYDAFWEQMQELDVPLYLHPFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLPFQRWRFDSRFAAYPYGVKLQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFSIDYPYESTALAVEFIESAPLDAATRDLVCYGNAARLFKL
>NC_018829.1|WP_015040863.1|263937_264588_+|nucleotidyltransferase-family-protein
MPRVDHGSPQAGPPAPCVGILLAGGQGRRFAAASGGQDKLLARLADGTAVAVRAAAALREATDAVVAVVRPESAALAALLRGQGCHVLESEQAREGMGASLAAAARFLLAGPVPDMPQGADVCLVALADMPWVRRETLSAVRAAACADGITVPVHQGRRGHPVAFGRSLWGELAALRGDVGARELLRRHRVVAVEVDDPGVAADVDTPGDLAGDRA
>NC_018829.1|WP_015040862.1|262859_263855_-|XdhC-family-protein
MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVRDDGQVVGSVSGGCIEDDLIARARAGTLPERAERLTYGVTRDEATRFGLPCGGTLRLVAEPLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGATALEAAAPAEGPDFDGRMFRAVYGPHWRLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVTTMPDDTVLEIGTDERTAIVALTHDPKLDDMVLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIARLRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSGAPLPAALAPAR
>NC_018829.1|WP_003807341.1|262318_262852_+|MarR-family-transcriptional-regulator
MPEPDKQATRKKRTTSSLTDSTVFDPAKQVLWSRPGYLVRRLNQIHYALFYEECKTQNVTPVQYGVLTALSLSPWLDQTAIGMELGLDRTTTADVIKRLQERGLVERRVNPNDKRSRQAVITQEGLRIMGLLQGGMARAQQRLLEPLSPRNREIFMKLLSTLVDANNQYSRTALKAM
>NC_018829.1|WP_003818499.1|260769_262239_+|potassium-transporter-Trk
MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFLLALGIGAGTWLATRRGRSELHARDGFLLVSTVWAALPALAAIPLLLYYDDVGIPLSFTDAYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVGGHQVVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTMGLGGFSTYDDGFAHFDSLSVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPYLTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVATTTGYANVDYASWPLFAPLTMLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMASVLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPLGPMGNFSVLNDFQTWVCTFAMLIGRLELLTVLVLFTPLFWRK
>NC_018829.1|WP_003818498.1|259341_260721_+|Trk-system-potassium-transporter-TrkA
MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDLRVVQGDGIQVSVLESAGADDTDLFIACAASDAANLVACKIAREVFNVPRRIARIRMPEFADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVGHGSPMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVRQLREAEKTVHRVMIAGGGNIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVLHGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAKRLGARKVIALINRQAYGELMQGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSNSRVVGRAVGKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASFF
>NC_018829.1|WP_003816293.1|269334_269850_-|nuclear-transport-factor-2-family-protein
MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDFFTETALYRVTARENAELNLPVGLVYAEGRDMMHDRAVAISRTQMFAPRYMLHMVSNTRVTSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGTLKLQERQVIYDTAILANDLVYPV
>NC_018829.1|WP_003807385.1|269864_271154_-|Rieske-2Fe-2S-domain-containing-protein
MYQSQTVIGRTLAAKDAPLSECAWPQDALHFIPDWVYTNNAVYEQELEKIFRGKTWNFVALEAELPNAGDYKRSYVGATPVVVSRAEDGSINVFENRCAHRGAEFCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRLHVTTRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENLKDPYHATLLHSFLVVFGLLVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEMRSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQREMNTLGVRHIIPNGPDSMIMQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKLESGKQGTSNTLISEAAIRSMYSYYREVMGF
>NC_018829.1|WP_015040865.1|271189_272452_-|FAD-dependent-oxidoreductase
MDEIQSIVIVGAGQAGAVAAASLRQLGYRGGLTLVGQEAHPPYERPPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTETAVAALDPAARTVRLADGRTLAYDRCLLATGGHARELPALPRGRTGVHYIRTLDDALDLRAALRPGVRAAVIGGGFLGLEVASTARELGAEVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAITLADGTQVNADLIVVSIGLAPEVALARQAGLPLDDNGGICVDSQARTADPHVYAAGDCASQPRACLGTAARFESWQNANEQARAAAAAMLGLAPAAEPYPWFWTDQYGCNIQILGLPQPGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRLADPAEALKPLVKAWQAAVAVA
>NC_018829.1|WP_003807389.1|272454_272766_-|non-heme-iron-oxygenase-ferredoxin-subunit
MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTHAYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAPATADIRIYPLKIENDDIYVDLQA
>NC_018829.1|WP_003807390.1|273235_274339_+|TRAP-transporter-substrate-binding-protein
MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSLDTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIGKNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMGGWYRKEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPPGDIYPALEKGTIDAAEWIGPYDDEKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANYDARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQEDEAGWFRVAENALDNYTFAAVARAQAK
>NC_018829.1|WP_003816295.1|274368_276747_+|xanthine-dehydrogenase-family-protein
MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPGLCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMMGDARDIAADSTLPTYQPSVQPPLASGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVASAQQATSDLVHEHWRDNVFVTLNADRDFDEHAARAEVVVKRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISATQVPHMIRSVLAQCLDLEQGRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFIEDRREHLTAGANSREHHYEMTAYADKRGKLLALDARITIDGGAYSVWPFTIGLEPGQAVGNLPGPYGFRGYRCETRCVATNKPGFVPYRGVARTGVCFAIELTMDAVAREVGREPWEVRLENLVQPEQMPYVNVTNKHFDSGDYPASLRKALEMIDIDGVRTRQARGEADGRRIGVGVATYTEQAAHGTSVFAAWGTPVIPGFDQATVRVTPDGGLEVRVGVHSHGQGMETTFAQIAHEILGIDVARIKVLHGDTGQTPFSTGTYASRSLVMSGGAVSQACKRLLPRMRHIAAHMLGVADDAVTLQDGIYRAGEKAVATGDVADAWYLRPQLLPPDVDPAGLEVNVGYKPKVDTGCFTYASHAAVVAVDPDTGAVEILDYVVVEDCGTMINPMVVEGQTIGGIAQGIGTAFYEETPYDANGQPLASTLADYMLPGPTEVPNMRLHHFETPSPHTEFGAKGMGEGGAIAPPAVLFNAVNDALRGLGAAELSRTPLTPIRVLQAIAQGAGEAA
>NC_018829.1|WP_003807394.1|276743_277580_+|FAD-binding-domain-containing-protein
MKAAQFEYFRAESTQQALQWLRQHDGRAKLMAGGQSLGPMLNLRLARPPVVIDISGVPALREVGERGGRVRVGAAVTHAEIEDGVHAALRGSALQQVATGIAYRAIRNRGTVGGSLAHADPAADWVLTMVALGADIEIAGVDGERMVPAESFMQGAYTTVVGEGELIAAVHVPAMTDGARWGYYKFCRKTGEFAEASCAAWFEPARRVARIAVGALDGAPCLLPGLADAVARQGAAALQAERIDEAVAQAMPGKDALHRKLHATAVARCLKQALGVQE
>NC_018829.1|WP_004566017.1|277576_278764_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MTMVQVTLEVNGRQVAHEAPPRMHLGDFLRDQARLTGTHLGCEHGVCGACTVLVDGQPVRSCITYAVACEGRQVTTIEGYDGDPVMARLRAAFTKYHALQCGYCTPGMLTTSRDIVLRLPDADEARVRVELSGNLCRCTGYMGIVGAVMSVLRDLREQPDAAVQALRAAAADGRLPAPRGEQPIAFQPFTPSAPAAAQAAPRPAAAASPAGGKGNQIVDAFTVPFPAAEVWAFMVDLPAVAACLPGAVIEETDGQRVKGKIAIKFGPMAAAFNGAARLERDEAAMRAVFRGAGQDSLSQSRATGDIAYQVEAVSENETRVKVDLQYALQGPLAQFSRSGLVQDFVRRMIADFGKNVTARLRQPGGEALPQAQFNPVAMFFSVLWMRVKRWFGRGG
>NC_018829.1|WP_004566018.1|278798_279827_+|ABC-transporter-substrate-binding-protein
MEMQKAIGKWWRRAMGGIALLAAAGTAGAQAPEPLRVRLDWTPWGVQAAFHLAQQKGWYKQAGLDVTLEDGNGSVTTVQIVGGSDRFDLGHAALASMMIARDKGLPVKAVAVFARHSDIGLLVPADSGIAGPEQLKGRKVAYTAGSLEAPFIDAFLARGKLKKSDLELINVDAASKASTYAVGRADAAFSTIPFFLPVVSQNRPSRAVRFADFGLDMPSFGLFASEDKLRERGEAIGRFASVSARAWEYIYAGHEDEAVSAILAQRPQARLDRTVLRGQIDALRGYFGLAAGQRVGAPVPADWELAVKTLSSVGLVRADARAADFYVPDLARPQRYDALVKP
>NC_018829.1|WP_004566019.1|279823_280612_+|ABC-transporter-ATP-binding-protein
MSVAAVSAAGVRKKYPGERGVQALETISIDVPAGRFVSILGPSGCGKSTFLRCVAGLETISEGELRVAGQPVKGPPDGIGMVFQRDALLEWRNIRRNILLPVEFAGKPVARYRDKVDALLRLTGLTAFADNYPRELSGGMRQRAAICRALVDDPALLLMDEPFGALDALTRDQMNVELQRIWMETRNTVMFVTHGIAEAVFLGDEVMVFSPRPGRVLETIRIDLPRPRPLAVRETAEFGRYVRHIRGLFEQMGLIDEGGRAP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_2

705835-705955

Orphan

Consensus_repeat	Method
CGGGACAGGCACCAGCAGGTGCGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_2

>merge|NC_018829|2|705835-705955|CRISPRCasFinder
GGGGACAGGCACCCGCACGGGCAGGCGCCAGTCCTCATGCGGGACAGGCACCAGCAGGTGCGGGCGCTGGCGTGGCTCCCGGTGCCTGTCCCCACGGGACAGGCACCCGCAGGTGCGGGCG

>NC_018829|2|2|705835-705955|CRISPRCasFinder
GGGGACAGGCACCCGCACGGGCAGGCG	CCAGTCCTCATGCGGGACAGGCACCAGCAGGTGCGGGCGCTGGCGTGGCTCCCGGTGCCTGTCCCCA
CGGGACAGGCACCCGCAGGTGCGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_003819377.1\|711992_712790_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131484
NC_018829.1\|WP_015040982.1\|702599_703622_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_018829.1\|WP_003808086.1\|701472_702585_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NC_018829.1\|WP_003808084.1\|699835_700186_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100007
NC_018829.1\|WP_003808090.1\|705002_705746_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_018829.1\|WP_004566200.1\|715378_716305_-\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|200599
NC_018829.1\|WP_003819368.1\|703618_704620_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_018829.1\|WP_003819379.1\|712827_714090_+\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|184168
NC_018829.1\|WP_015040983.1\|706217_707108_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|188630
NC_018829.1\|WP_003819364.1\|700488_701448_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NC_018829.1\|WP_172593751.1\|709935_710685_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NC_018829.1\|WP_003808083.1\|698641_699805_+\|cystathionine-beta-lyase	unknown	unknown	gnl\|CDD\|181615
NC_018829.1\|WP_015040984.1\|710681_711920_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NC_018829.1\|WP_003819372.1\|708428_709259_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270431
NC_018829.1\|WP_003819362.1\|697095_698625_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143448
NC_018829.1\|WP_015040985.1\|714095_715370_-\|amidase	unknown	unknown	gnl\|CDD\|223232
NC_018829.1\|WP_003819361.1\|696183_696882_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_018829.1\|WP_003819369.1\|704622_704913_+\|hypothetical-protein	unknown	unknown	unknown
NC_018829.1\|WP_003808092.1\|707108_708344_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NC_018829.1\|WP_003808094.1\|709255_709906_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_003819377.1\|711992_712790_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	1.02062e-47
NC_018829.1\|WP_015040982.1\|702599_703622_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.63233e-124
NC_018829.1\|WP_003808086.1\|701472_702585_+\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	2.68222e-28
NC_018829.1\|WP_003808084.1\|699835_700186_+\|RidA-family-protein	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	5.19285e-55
NC_018829.1\|WP_003808090.1\|705002_705746_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.15476e-76
NC_018829.1\|WP_004566200.1\|715378_716305_-\|allantoinase-PuuE	gnl\|CDD\|200599	cd10977, CE4_PuuE_SpCDA1, Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins. Allantoinase (EC 3.5.2.5) can hydrolyze allantoin((2,5-dioxoimidazolidin-4-yl)urea), one of the most important nitrogen carrier for some plants, soil animals, and microorganisms, to allantoate. DAL1 gene from Saccharomyces cerevisiae encodes an allantoinase. However, some organisms possess allantoinase activity but lack DAL1 allantoinase. In those organisms, a defective allantoinase gene, named puuE (purine utilization E), encodes an allantoinase that specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. PuuE allantoinase is related to polysaccharide deacetylase (DCA), one member of the carbohydrate esterase 4 (CE4) superfamily, that removes N-linked or O-linked acetyl groups of cell wall polysaccharides, and lacks sequence similarity with the known DAL1 allantoinase that belongs to the amidohydrolase superfamily. PuuE allantoinase functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCAs. It appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common features of DCAs that are normally metal ion dependent and recognize multimeric substrates. This family also includes a chitin deacetylase 1 (SpCDA1) encoded by the Schizosaccharomyces pombe cda1 gene. Although the general function of chitin deacetylase (CDA) is the synthesis of chitosan from chitin, a polymer of N-acetyl glucosamine, to build up the proper ascospore wall, the actual function of SpCDA1 might involve allantoin hydrolysis. It is likely orthologous to PuuE allantoinase, whereas it is more distantly related to the CDAs found in other fungi, such as Saccharomyces cerevisiae and Mucor rouxii. Those CDAs are similar with rizobial NodB protein and are not included in this family.	2.01281e-162
NC_018829.1\|WP_003819368.1\|703618_704620_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.66666e-14
NC_018829.1\|WP_015040983.1\|706217_707108_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	7.04485e-92
NC_018829.1\|WP_003819364.1\|700488_701448_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	1.47742e-92
NC_018829.1\|WP_172593751.1\|709935_710685_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	7.94859e-141
NC_018829.1\|WP_003808083.1\|698641_699805_+\|cystathionine-beta-lyase	gnl\|CDD\|181615	PRK09028, PRK09028, cystathionine beta-lyase; Provisional.	1.88042e-149
NC_018829.1\|WP_015040984.1\|710681_711920_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_018829.1\|WP_003819372.1\|708428_709259_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270431	cd13713, PBP2_Cystine_like_1, Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This group contains uncharacterized periplasmic cystine-binding domain of ATP-binding cassette (ABC) transporters. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.07516e-107
NC_018829.1\|WP_003819362.1\|697095_698625_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
NC_018829.1\|WP_015040985.1\|714095_715370_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	5.49495e-98
NC_018829.1\|WP_003819361.1\|696183_696882_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.1478e-40
NC_018829.1\|WP_003819379.1\|712827_714090_+\|Zn-dependent-hydrolase	gnl\|CDD\|184168	PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional.	1.72641e-169
NC_018829.1\|WP_003808092.1\|707108_708344_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	1.35686e-174
NC_018829.1\|WP_003808094.1\|709255_709906_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.24852e-72

>NC_018829.1|WP_003808090.1|705002_705746_+|IclR-family-transcriptional-regulator
MGKTLVKGLHLLERLAASPEPMGITELAADLDLVQSNVHRLLQTLMESGYVQQDALTRRYRCTMRLWEMGTQIADRMDLSRIARPHMQALVKQSQETVHLAILDGADVLYIDKIDSPQPVRSYTRVGGRAPAYCTGTGKMLLAYCDDLAAALPAKLVKHTARSIASHAALKAELRRVREEGFSENAGEWREDVYGMGAPLFDATGKVSAAIGISGPLARMDAAVVARVRPMLQETARIISRELGYRG
>NC_018829.1|WP_003819369.1|704622_704913_+|hypothetical-protein
MCAEVDYEDRGTYRKVPPPSEALIERTRQVEAGMPGERVPEQAWGTFFAVSCGVMDMGSFQRMFEARRIALSYLAMQRARYARRHGGGTGLRCIGD
>NC_018829.1|WP_003819368.1|703618_704620_+|hypothetical-protein
MKMLNRLDLGVPCLRAGFAGEQAFFLAMDGRLHVQQGDQRRVVALHDGDVLSACAAPGQADAAAWLLSAGEDGRVMRAGAGEPDCVASVPNKWVTALAVAADGALAYASGRTVWLAGGGGEAAALPQERPVQALRFSHGGRWLAVAGYDGLALYDRQAGGEPQRLDWKGMPTRVAFSPDDRFVLVATRDAVLHGWRLDTLRHFRMVGYPRAVGSWSWLAGGQWLATDGSAGAVLWPFEGEEGPIGSTPLALGERPDGEVSAVACHPARPWVAVGYADGLMVLESTDGALRRILGQAGRDRVACLAWDRAGARLAYGTPSGACGVIQADMGEEG
>NC_018829.1|WP_015040982.1|702599_703622_+|GTP-binding-protein
MSEATRKVPVTVLTGHLGAGKTTLLNRILTGQHGRKYAVIVNEFGEIGIDNDLIVESDEEIYEMNNGCICCTVRGDLIGILHKLLRRPGRFDAIVVETTGVADPAPVVQTFMMDEEVREKTELDAVITMVDAKHFPLRLADSQEAEDQIVYADVVLINKVDLVSDGEADQVQRRVAAINPYAACHRVQRAEIDLARILSIGAFDLQRCVELEARAAPAGCGHEHEHDEHCHGGTDHHHHHHEISVMSVSLQAGALDGRRFFPWIHSLVEKQGPDILRMKGILALDDDARRYIIQGVHMIVEGEHQRAWRDDEPRASKLVFIGRGLDAQALRAGFEACRSQ
>NC_018829.1|WP_003808086.1|701472_702585_+|hypothetical-protein
MASIKGLREVAYFDCAGGGQVYVQGNYAYIAHMDAPAGTTIVDISDPRHPRQVAHIPIPDGVHTHKVRVENDLMLVNWECPPPYILGENFQGGLAIYDVSDPTNPRQICFWKTAGTGVHRFDFDGRHAYITPEVEGYHLNIAMILDLENPAKPREVGRWWMPGQWVAGGETPDEGYRMTWCHQVLRRGNRLYVAYWHGGMVILDIEDMSKPKLVSKFAYSPTFAHPTHTVLPLPFELAGRKIAIVADEDVRKVRPSPPPFMWLFDITDETQPVPISTYQIEELMDKNMPEFTGCHQPAEQVYGTEIPVAWFAKGLRVVDVKNPHAPREVAHFEPDIPGFDRAQTNDVFLTKEGLMYIIDRNRGMHILERI
>NC_018829.1|WP_003819364.1|700488_701448_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKLIVAALFAVLPSMVGAQQAPRGTMTIVNPFTVSGLTDLVARMVAEKAHAKFPDGVAVVSRPGGGGSIGIASVVNARPDGSSIGFTPTGAVVDAPQMMKGLAYKTPDDIDPIINVFSSYQMLAVRGDADWKTAQDFIKAVRQSPGKYSLGHTGNGTASHLNMAQLVQAAKLNVLEVPYKGWAQSSVALLGGHVDAIVINAGEGRALVDEGRLRILGVFQAQRVPYHPDVPTFKEIGYDVGVGLKFFFFGPKNMDAGVKQYIHDAFKQAMQNDDFKKFIASREVEVDYMDGAQTKAMLWSEYKQHTKLLDSLGLLAKQ
>NC_018829.1|WP_003808084.1|699835_700186_+|RidA-family-protein
MSDIQYVETSPRYSKAVIHGDTVYLAGQVADDPGGTVQDQMRQILAQIDALLARCGTDKSRLLSAMVLLKDMRDLEAINPLWDAWVVPGRAPTRTPSEARLALPGYLVEVQVTAAR
>NC_018829.1|WP_003808083.1|698641_699805_+|cystathionine-beta-lyase
MKPDTRLVHLGRDPERFEGLVNIPPCRTSTFLHASVADYQAAASRKQDSLYYGRFGSQTSRALEAACTELDGGHGAMLFPCGLAAITRVLGSLLEPGQHLLMADTVYGPARAFCEQELARLGVETTWYAPDADLDALVRPATRVIYGEAPGSLTFEMQDLRALAEVARRHGLVSVVDNTWATSWFCQPLALGIDISIQSASKYIVGHSDAMLGVAVANEAQFPALRRAAAQYGNAVSPDDCYMALRGLRTLGVRLERHQASALRVAQWLRTRAEVEQVLHPALPDSPGHALWRRDFSGASGLFGVAFRAGDDAALARFVDDLRLFGIGVSWGGFESLALPSHPVRNTSAAALGGRPLVRLHIGLEDPDDLIADLARALDRHMAAARG
>NC_018829.1|WP_003819362.1|697095_698625_+|aldehyde-dehydrogenase-family-protein
MTTVHCATPEETRRLLQQLGVDPARYDGGTLEVRSPIDGQAIARLPELTAEQARARVADARQAFLAWRKVPAPRRGELVRLLGEELRAAKAELGRLVSIETGKILSEGEGEVQEMIDICDFATGLSRQLYGLTIATERAEHRMMETWHPAGPVAIISAFNFPVAVWAWNAAIALVCGDSLLWKPSEKAPLTALATQALLERALARFGDAPAHLSQVLIGGREVGEALVDDARVPIVSATGSTAMGRKVGPKVAERFGRSILELGGNNAAIICPSANLDLALRGIAFSAMGTAGQRCTSLRRIFVHEQIADDLVARLKQVYESVAIGDPRDSGTLIGPLRDQAAFDAMQRSLADARAAGGRVTGGAREPVGGHDQAYYARPALVEMPAQSEVVERETFAPILYVMRYRDLDEAIALQNDVPQGLSSSIFTNDLREAERFVSAEGSDCGIANVNIGPSGAEIGGAFGGEKETGGGREAGSDSWKAYMRRTTNTVNYGNALPLAQGVKFDVA
>NC_018829.1|WP_003819361.1|696183_696882_-|GntR-family-transcriptional-regulator
MRMMEPDEPHDGATDDKASMPLRRQAEDALRKTILSGRFMPGERLKERELMELLNASRTLVREALRQVEAEGLIEIVPNRGPVVAVLSYEEAEEIYEVRGILEAQTCTGFALRAGSGHMKTLAAAFDALSEAARQGDIPRTLALSDTFYDTIAAGCGNRLLGNMLRQLHNRIVLLRRTSLSEPSRLPETLYELTQIFEALKARDEIAAGKAALHHVRQASRTALQVLRSRQS
>NC_018829.1|WP_015040983.1|706217_707108_+|4-hydroxy-tetrahydrodipicolinate-synthase
MLISARTLRGIITATPTPFTREGGVDREVLRSHIEFLIGRGAAGLAPLGGTGEYPALSARERADVVRWTVEAARGRVPVVAGALATGYEDAVQAGLAAREAGADALMVVTPYYALAGDAGVRAYFERYRAAVDLPIVLYEIPRRTNVELRAETIAAMAGDGTIVGIKYSGSDFAKLTRLIHLAGDTLAVLSGEEPLFPAAVALGAVGGVLAMSNLDPAPWARIQSLVEAGEMAQALQLHHRQGALADAVYSEMNPVGLKAALQLKGFAFGEARLPLQPAGPQTLLRLQQAFEALES
>NC_018829.1|WP_003808092.1|707108_708344_+|pyridoxal-phosphate-dependent-aminotransferase
MNTISDSAAVAAGRRVAARMARVTTSKIYLAIAKVADMQAQGMQVASLTAGEPDFDTPAHVIEAAVQAMRGGDTHYTPVRGSLAMREAVRQKFQRENGLAFRDEEVMVGTGSKQVIANALAVTLETGDEVLLPVPYWAAYTGMVYAAGGVPTFVGTRAEDGYKLTPQALRAALGPRTRWVILNTPSNPSGLVYGSDELRALGEVLRERPDVLILTDEIYEHLNYTAEPPASLRKLCPDLAERIVVVNGVSKAYAMTGWRLGFAGGPADIIEAMANLQAQTTLAPCSISQAAAVAALNGPRESIDAMAAAYRRRRDLVMQIAGGQPGVRLQRPDGAFYAMLDLSEALAGGERFRGDPEPDQAFCEWLLETRHVAAVPGSVFGAPGSVRISFATDEQTIERGLTGLLDAAAHC
>NC_018829.1|WP_003819372.1|708428_709259_+|transporter-substrate-binding-domain-containing-protein
MNAVIRKMPAMLKWLMAVPLALGLAHAHAETVLEKARAKNEIRIATSDSLKPWGYMDDTNKPIGFNLDVSREMGKRMGFGKVTFVTDSYKNFISGLNADRYDMVVAILTPTEERRKSADFSNPYMVVSKNIFVRDDNTSIRSLEDLAGKRLGVAAGTTDEAWARQHVKDAQIRVYDNFFLALQDLAIGRVDARITDRVTGMTAAKEGRFPVKIAGPDLSQDIGAIAYKKGQDDLAAVVNKVIQEMVDDGSLNEISRKWLAGIEMGEELKKLPKDAR
>NC_018829.1|WP_003808094.1|709255_709906_+|amino-acid-ABC-transporter-permease
MIELLHKAAPIIQGALLMTLLLGLSSAVLGTALGLVLALFRLSPVAPLRWLAFWYVSIFRGTPLLLQLLLIYFGLPHYGIELEPVPTAILALSLCSAAYLSENFRSGILGVDRGQIEAAQSLGMGAARSLFRIILPQAIRIAAPTMGTRYIALMKDTSLASTITVVELTKMAEQVGSNTFRYMEMFIIAGALYWVINQMLTFIQVWVESKLGKGVA
>NC_018829.1|WP_172593751.1|709935_710685_+|ATP-binding-cassette-domain-containing-protein
MVQVEGLRKSFGANTVLKGVDLTIRRGEVVVVMGPSGSGKTTFIRSLNFLEVPDEGAITICGTRVAVQAGAGLKREQRRRVREIRQKTAMVFQSFNLFSHMTVIKNIIEGPVQVKGAARDQAIEQARALLRQVGLAEKENEYPSRLSGGQKQRVAIARALAMKPEVIFFDEPTSALDPELRDEVLSVMRKLADEGMTMVVVTHEVRFARDVADRVIFMEGGVVLEDAPSASFFDAPASERIRQFLRRVQ
>NC_018829.1|WP_015040984.1|710681_711920_+|amidohydrolase
MTAGARPGWAADPLVEAVGRETGELMRGIRHDLHAYPELSFEEHRTAGRVRACLQEWGIPVLDGLGETAVVGVLRAGGGGQAIGLRADMDALPIHETNTFGHASRHAGRMHACGHDGHTAMLLGAARYLQRHPDFDGTIYLIFQPAEENGRGARAMIEAGLFRDHPMQAVFGLHNWPGLAAGKFALTAGPIMASSSRVKVTYTGKGGHAALPEQAIDPVAAVAALHQALQTVVTRNTAAHDSVVLSITQLGGSDNHCVIPDQAWLAGSLRTLSPAVLERTCARIRDIAQGVAAAFSCTARIEIEHAVPATINDAGATALCRDAIAQWLGPKWLNDGFIPTMGAEDFAFMLQALPGCYLMLGNGGGREGETATVCGLHNPGYDFNDEIAAVGAAYWVRLAGHCLPRGGAGPLA
>NC_018829.1|WP_003819377.1|711992_712790_+|helix-turn-helix-domain-containing-protein
MASKKAAGEADKDHLFVNSVAKAFRLLEAFDKSRPMSGFSQAAREIGMEKSAAQRAAHTLWRLGYLDKVGRDGEYRLSRRCLDIGQRYLETNRLVVCTNPYLKFLRRKTNASVNLAMLDGTDTVFPVRYTSQEMLNNDLGERARIPAYCTATGIAIFSAMPDEAVREVLERSDLKPLMPNSIWQMDRIMERVESARRDGYVLGVEEDFASDITIACPISDPATGDVAAIGVSYSSEVTAVEQVVQDWCPLVMSTAREVTARLAER
>NC_018829.1|WP_003819379.1|712827_714090_+|Zn-dependent-hydrolase
MTAAFASLGQTIVDQAARLASHSDMEGGLTCAYLTPAHRATQAQLAQWMEAAGMAVRIDAIGNVIGRYAADPAVAAPRVLMTGSHFDTVRDGGRYDGRLGILLPVAVAGALRDAGVRLPYHLDVVAFAEEEGLRFKTSFLASGVLAGSFDPALLARQDADGVTLAQALAASGLPGAGDPAALRAAALDPATLLGFVEVHIEQGPVLLHHGLPLGVVTQIAGSSRFMARVEGMAGHAGTTPMNLRQDAGAAAAEMVLLVESRCSQVPTLVGTVGQLQVPNGSGNVIPGACQFSIDIRAAEDPVREAAVADVRAGIEQIARRRGVRVSLDAVPPVGSVPCARWLMDQFGAALSEAGLAVHELPSGAGHDAMVMQRIADVAMLFVRCGNGGVSHNPLETLSAEDAQQAAEVFAAFLRRFAPRG
>NC_018829.1|WP_015040985.1|714095_715370_-|amidase
MQPLHLLGLDEARERLMAGACDSVDLVQACLDRIAAREEQVRAWAWVDAEGALRKARAMAGARPDPRRPLAGLPIAVKDIIDTADMPTAYGSPIYAGHRPAWSAYCVAAIEAAGGIILGKTATSEFAHSAPPATRNPHAPAHTPGGSSGGSAACVADFMAPAALATQTGGSTIRPAAFCGVVGYKPSLGLIDRTGVRPMAEALDTVGLMARAVADIQLLAGVLAGVPASTPGSAAPRIGLYRTPHWERIDAPSRDALLARLRRLERHGARVAEVPDLPALHPLYQDQRDIMNHQAARALLHEYRQHREQLSPALRAALEAGQACSPDALRAAWQRTRRARRAYAELWADYDLIVTPAALGAAPAGIASSGDSLLNRNWSLLGVPTLSLPNGADPRGLPLAMQLAGSHGGDAALLGWARWIEAAA
>NC_018829.1|WP_004566200.1|715378_716305_-|allantoinase-PuuE
MTMQTDRSLLTRRDFVGYGSTPPDPQWPGQARLALNIVVNYEEGSEASFEDGDGRSELGLTEVTGSSFQGRDLAAESMFEYGSRVGIWRVLRLLRERGMTATFFACAQALERNPAVAQAIREGGYDVCCHGWRWTPLQALSEAQEREEMQRAVASIERTTGQAPAGWYCRYAPTVNTRKLVLEQGGFLYDSDSYNDELPYWVDAGDRHHLVIPYTQAHNDAKFVRSGIATADDFFAFLRDSFDMLYAEGATQPKMMSVGLHMRLVGHPGRAAGLARFLDHVAAHERVWVCRRLDIARHWHGLHRPAAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_3

1292635-1292709

Orphan

Consensus_repeat	Method
CGCCGCGCTGCACGGTGCCTGTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_3

>merge|NC_018829|3|1292635-1292709|CRISPRCasFinder
CGCCGCGCTGCACGGTGCCTGTCCCAACGGGGACAGGCACCCGGATGCCACGCTGCGCTGCACGGTGCCTGTCCC

>NC_018829|3|3|1292635-1292709|CRISPRCasFinder
CGCCGCGCTGCACGGTGCCTGTCCC	AACGGGGACAGGCACCCGGATGCCA
CGCTGCGCTGCACGGTGCCTGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_003819637.1\|1286015_1286636_-\|2-hydroxychromene-2-carboxylate-isomerase	unknown	unknown	gnl\|CDD\|239320
NC_018829.1\|WP_015041170.1\|1291389_1292547_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NC_018829.1\|WP_003809128.1\|1288822_1289899_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NC_018829.1\|WP_015041171.1\|1292886_1294275_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NC_018829.1\|WP_003819654.1\|1295457_1296879_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_018829.1\|WP_003819659.1\|1303158_1304085_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_018829.1\|WP_015041174.1\|1300645_1301680_-\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|184954
NC_018829.1\|WP_015041169.1\|1288190_1288826_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|378278
NC_018829.1\|WP_003819639.1\|1286686_1287106_-\|ester-cyclase	unknown	unknown	gnl\|CDD\|273970
NC_018829.1\|WP_015041175.1\|1301693_1302467_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|184955
NC_018829.1\|WP_004568287.1\|1287338_1287866_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|213983
NC_018829.1\|WP_003809136.1\|1297114_1297447_+\|hypothetical-protein	unknown	unknown	unknown
NC_018829.1\|WP_004568284.1\|1289957_1290617_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NC_018829.1\|WP_015041172.1\|1294276_1295284_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NC_018829.1\|WP_010927811.1\|1287903_1288194_-\|metal-binding-protein	unknown	unknown	unknown
NC_018829.1\|WP_003809130.1\|1290718_1291222_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319910
NC_018829.1\|WP_015041168.1\|1284958_1285981_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270321
NC_018829.1\|WP_003819653.1\|1295294_1295441_+\|DUF2474-family-protein	unknown	unknown	gnl\|CDD\|371167
NC_018829.1\|WP_015041173.1\|1297457_1300619_-\|tetrathionate-reductase-subunit-TtrA	unknown	unknown	gnl\|CDD\|237883
NC_018829.1\|WP_003809146.1\|1302782_1303136_+\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|238008

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_003819637.1\|1286015_1286636_-\|2-hydroxychromene-2-carboxylate-isomerase	gnl\|CDD\|239320	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).	1.83035e-76
NC_018829.1\|WP_015041170.1\|1291389_1292547_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.56718e-80
NC_018829.1\|WP_003809128.1\|1288822_1289899_-\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	6.29763e-138
NC_018829.1\|WP_015041171.1\|1292886_1294275_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NC_018829.1\|WP_003819654.1\|1295457_1296879_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.75526e-136
NC_018829.1\|WP_003819659.1\|1303158_1304085_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.03606e-26
NC_018829.1\|WP_015041174.1\|1300645_1301680_-\|polysulfide-reductase-NrfD	gnl\|CDD\|184954	PRK14992, PRK14992, tetrathionate reductase subunit TtrC.	7.99868e-43
NC_018829.1\|WP_015041169.1\|1288190_1288826_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|378278	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA. This family of bacterial sequences is predicted to catalyze oxidative de-methylation of damaged bases in DNA.	2.07661e-50
NC_018829.1\|WP_003819639.1\|1286686_1287106_-\|ester-cyclase	gnl\|CDD\|273970	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.	1.23413e-52
NC_018829.1\|WP_015041175.1\|1301693_1302467_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|184955	PRK14993, PRK14993, tetrathionate reductase subunit TtrB.	2.04335e-131
NC_018829.1\|WP_004568287.1\|1287338_1287866_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|213983	cd12108, Hr-like, Hemerythrin-like domain. Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis.	1.38579e-12
NC_018829.1\|WP_004568284.1\|1289957_1290617_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.35503e-52
NC_018829.1\|WP_015041172.1\|1294276_1295284_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	4.36776e-99
NC_018829.1\|WP_003809130.1\|1290718_1291222_-\|VOC-family-protein	gnl\|CDD\|319910	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.40007e-55
NC_018829.1\|WP_015041168.1\|1284958_1285981_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270321	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic-binding component of TRAP transport systems such as SiaP (a sialic acid binding virulence factor), TeaA (an ectoine binding protein), and an uncharacterized TM0322 from hyperthermophilic bacterium Thermotoga maritima. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.62696e-122
NC_018829.1\|WP_003819653.1\|1295294_1295441_+\|DUF2474-family-protein	gnl\|CDD\|371167	pfam10617, DUF2474, Protein of unknown function (DUF2474). This family of short proteins has no known function.	2.47299e-05
NC_018829.1\|WP_015041173.1\|1297457_1300619_-\|tetrathionate-reductase-subunit-TtrA	gnl\|CDD\|237883	PRK14991, PRK14991, tetrathionate reductase subunit TtrA.	0
NC_018829.1\|WP_003809146.1\|1302782_1303136_+\|EF-hand-domain-containing-protein	gnl\|CDD\|238008	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.	6.77115e-08

>NC_018829.1|WP_015041170.1|1291389_1292547_-|metallophosphoesterase
MSLRRSAFFIRFLTLGALAHVYVGARLIPDAGLPAAGVAAAILALCASCVLIPLGMASHASGRQPWGDRLAAVGLVAMGYFSSLFVLTVLRDAALLLAWLAALATLPVPMDALRAASAPAVPLLALAATLLGLANARRRARVVTVDVPIDALPAALQGYTIVQISDLHVGPTIKRRYLQAIVDAVNAAGPDLVAVTGDVVDGPVAHLSPHTQPLAALRAPDGVYLVTGNHEYYSGAAAWVQEFRRLGLCVLQNEHRVVRRGDAALVVAGVTDYGAAAFDASQRSNPAQALAGAPAKAAVRLLLAHQPRSAAAAAPLGYTLQLSGHTHGGQFLPWNWFVRLQQPFTAGLHRYGPMWVYTSRGTGYWGPPKRLGAPSEITRVRLVRA
>NC_018829.1|WP_003809130.1|1290718_1291222_-|VOC-family-protein
MATAVKPIPEGMHTLTPHIICAGAARAIDFYIKAFGAVEMARLAGPDGRLMHGAVRIGDSTLMLMDAFPEWDTPDPKALNGTPVVLHLYVEDVDAAHAQAVAAGATSVMPVTDMFWGDRYGQVRDPFGHLWSIATHKQDLTPEQIAEAARNAPPCPDVAEQAGKARE
>NC_018829.1|WP_004568284.1|1289957_1290617_-|DNA-3-methyladenine-glycosylase-2-family-protein
MTAATLSPAAYAHAERFLAGLDADWRGHVAATGPCLHRPLPAREPYEALVRAIAYQQLHARAGDAIVGRLLALFPGGAFPAPGQLLAADPAALRACGFSAAKTQTILGIAQAARDGVVPDRRAARRMSDQALVERLTTLRGVGRWTVEMLLIYTLARADILPADDFGVRDGYRRLKGAAATPTARQMRDIGQAWGPYRTLAAWYLWRVPPEARIRAQET
>NC_018829.1|WP_003809128.1|1288822_1289899_-|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MNLPVRPAPAYATPEARWAAVQARDPAADSHFVYAVRTTGVYGRPSSAARLPRRENVEFFDNAEAARAAGYRPSRHNAADRTVTARQHSALVAAACRHIEQADTPPTLEALAAHVGLSPFHLHRLFKAETGLTPKAYASAQRARRLRAELGESASVTAAIYDAGFNSNSRFYEASQQLLGMAPRAYRAGGANARIRFAVAQCALGAILVAQSQLGICAILLDDDPDYLVRQLQDLFPRATLIGGDAGFERLVAEVVGFVEAPALGLNLPLDVRGTAFQERVWQALREVPPGATVSYTDIAERIGAPKAVRAVAQACAANRIAVAIPCHRVVRRDGDLSGYRWGVDRKRELLRREAATP
>NC_018829.1|WP_015041169.1|1288190_1288826_-|2OG-Fe(II)-oxygenase
MTPALTPGILQAGATAIAALDRAALHARLDRDGWALLPALFDAPAIAALLACAPPQGAGSAAGVFAPLRAALYAQLAPLANAWAQTLQTGWRYPASAPAGVPPDIRLDVVEAGHARPLTQHEPAPDVFPLQLVVLLSDPKRDFAGGELVLTEQRPRMQSRPIVIPLRQGDAALIPTAHRPCRGAHGFYRASLRQAISPVRAGRRVGLALLP
>NC_018829.1|WP_010927811.1|1287903_1288194_-|metal-binding-protein
MSPSARRWRLIGADGQPLLSAEPGTLGGHRRGRLYGRLDCRAAARALARGGYAAQRVFFLDEASAVAAGYRPCAVCMPQAYAAWKTARAHKRAAME
>NC_018829.1|WP_004568287.1|1287338_1287866_-|hemerythrin-domain-containing-protein
MSSAFPAPAPDFDQPLQLLAACHGRIERQCATLERLAAHLRAQGSDDAARTAAASVMRYFDSAAVKHHEDEEQDLFPALIESMAGSDAVCLRQLVGSLTDEHRALGSAWRRVREVLQQVADGQGAAFAPGQAEDFVAAYRAHLRREDEELLPLAERLLDDGALADMAQAMRDRRS
>NC_018829.1|WP_003819639.1|1286686_1287106_-|ester-cyclase
MTWRVDLIAQHIEVENRHLMDEMLATLADENPVRDEVAGRVYRGKDQVAARYAELWQAFPDFNVRPVRYTEQEGIVVMEAIYTGTHHGAYLGLPGSGKSFNVRLVNVFGFDDERIESETIYIDLAGQLRQLGITAIPRN
>NC_018829.1|WP_003819637.1|1286015_1286636_-|2-hydroxychromene-2-carboxylate-isomerase
MHIDYYFSVVSDWAYFGGERLERLARRHGATIRHKPMQLSAVYAQTGGILLQQRSTQRQAYRVTELERWRNHLGIPITLHPRHYPVDDIPASCAILAAQELGMATGDYANAVLRAIWTQERDISDPRTLDEIARGLGLDADAILQLAQAPHIRQRLADNTREAIGHGVFGSPFYLCNGHLFWGQDRLPFLEDVLAGRVGAYAGAPA
>NC_018829.1|WP_015041168.1|1284958_1285981_-|TRAP-transporter-substrate-binding-protein
MLRTARTTLAIIAAATLLAACDKGGADRPQAASGAQPRTLQLAHVSVENEDDMYHHLAAGFAERVARHTDGAVKVQVLGGAQLGGERDVAEGMQLGSIDMSVIASFALGAFEKKAMIFDLPYLFKDYPTAFQALDSSFTDGIEADLEKTGLKVLGWGHGGFRNLYNSKQPIRTLADLKDMKVRMPENPIYVDTWRALGVNVTSMAYPELFTGLQQRTIDGAENPTALYYTSRFYEAAKYLSKTEHVYVAIPIVVSARIWTSLAPGQQAAFQQAADEAIAAQRQFLLATEAATEKKLAEAGVAINTDVDKAAFRQAAAPVYERYRNTIDPELVNRAQALAQ
>NC_018829.1|WP_015041171.1|1292886_1294275_+|cytochrome-ubiquinol-oxidase-subunit-I
MMSSEALLLARIQFGFTISFHIIFPAITIGLASYLAVLEGCWLRTRDTVYRDLYHFWSKVFAVNFGMGVVSGLVMAYQFGTNWSAFSEFAGSITGPLLAYEVLTAFFLEAGFLGVMLFGWSRVGPRLHFFSTIMVALGTLVSATWILASNSWMQTPAGYEIVDGRVVPVDWLAVIFNPSFPYRLAHMGIAAFLATALLVAASGAWHLLRGHRTPAVRRMFAMALGMLAIAAPLQAVVGDMHGINTLKHQPAKIAAIEGHWENVPGEGVPLHLFGVPDMQAETTRYALSVPRLGSLILTHNLDGQFPGLKSYPPADRPNATVVFWSFRVMVGLGLLAIALAAWAGWARLRGRLYDSRALQRFALAMGPSGLVAILAGWYTTEIGRQPWIVQGLMRTADAATPHGVPALTLTLLLFVFVYLIVFGAGIVYVLRLIARGPSGSAPAGGEPGLVQRPLAAAQQGGL
>NC_018829.1|WP_015041172.1|1294276_1295284_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MGVDLSLIWAIIILFGVMMYVVMDGFDLGIGVLFPLLPGKSDRDVMMNTVAPVWDGNETWLVLGGAGLLAAFPRAYAVVLGALYLPLVFMLLGLVFRGVAFEFRFKADEHHRPFWDRAFIGGSVAAAFFQGATLGAYLQGIELVDGAYQGGPWGWVTPFSLFCGAGLVVAYALLGCTWLIMKTEGALQRRMIVVARPLTGALLAVIAVISVWTPLIEPAIARRWFSLPNFYAFAPVPVLVLAAAWGLLRALRGQPDMAPFLLTLALVFLGYSGLCISLWPHAIPPGVTLWEAAAPPQSQGFALVGALFIVPVILTYTAWSYYVFRGKVRAGDGYH
>NC_018829.1|WP_003819653.1|1295294_1295441_+|DUF2474-family-protein
MTEDTLDRPASTLRRLGWLALLWAGGVAGLGLAAGGLKLIMKLAGLTP
>NC_018829.1|WP_003819654.1|1295457_1296879_+|PLP-dependent-aminotransferase-family-protein
MKLKRYEVLADEITASIQAGTRRAGDRLPSVRQTSASRGLSATTVFKAYYLLEARGLIRARDRSGYYVVGKPKALPPELEAGAPAESRRVDVDVSDRVLHVLQLTMRRDVVPFGSAFPHPSLFPHARLARAMASSVAALDPWSSVDDLSAGNTRLRRAIALRYLADGVQVRTEDIVITNGALEALNLCLGAVTRPGDSVLIESPTFYSALQSLERLGLRAIEVPAHPREGIELDALARAIDTHRPAACWLMTNFQNPLGSLMPEDKKRALVELLAARDVPLIEDDVYSELYFGAQRPLPAKAYDESGIVMSCSSFSKSLAPGWRIGWVLGGRYADRILRGKLALSLSTSAPSQAALATYLEHGGYDRHLRQLRQTLEQQRNQVMEAIARHFPPGTRTTHPDGGYFLWVALPPQVDALAVHRAALSLGVSTAPGPIFSVQDRFRHCLRLNYGHPFDARAQDGLATLGKLIARQC
>NC_018829.1|WP_003809136.1|1297114_1297447_+|hypothetical-protein
MYRGHEAIKQFMQAIGLPWTPGQAESAELRASYRIGSGRPLNIDRTRVEFHCDDARAKVWVPEFARTSFHQWFEVAYQDFEYAPGASMLKIKAAARGNAAAYSVGLKPLA
>NC_018829.1|WP_015041173.1|1297457_1300619_-|tetrathionate-reductase-subunit-TtrA
MPKQHPTPDTDAPADARRRKLIARGGAVAGGMAAFAAGYGETVARAVKGLAQGSAGAPTADALRGNSLTPEFRIDPVTGALSAQPGQTVSPSSCLGCWTQCGVRLRVDTETNRILRVAGNPYHPLATTQPAPMHAPVREVYARLGGDNGLEGRATSCARGSAMLEQLTSPYRVLQPLKRVGPRGAGQWRTISFEQLVEEVCEGGDLFGEGHVDGLRAIYDPVTPLDPDNPEYGPRSNQLLFTDSANEGRTPLIQRFAAQSFGTVNVSNHGSYCGQSFRVGTGAAFGDLKGMPHGKPDWTRARFGLFIGTAPAQSGNPFQRQGRQLAEARVRDDGAGFHYVVVSPVLPASASLAAGSGNEWLAVNPAGDLALVMGMIRWILEHDRYDAAMLSQPGPAAMDAAGEAAWTNATHLVIDAPGHARHGSCLRGADLGWPRAGADPQAEDVYVVQRPDGTLAPHTHAGPAALFVERDLPAAGVAPGLGGVRASSALALLRREARRMTLDEYARHSGVPAARIAGLAERFTSHGKQAVADAHGGTMSGAGFYTAYAIAMLNTLVGNLNVAGGLVLDGGPFAPYGKGPRYDIAGFAGRVAPRGVSLSRNRFPYEKSSEYRRKAEAGQSPYPAQSPWYPATGALSSEMLASALAGYPYRAKVWLNHMSNPVYAIAGLKNVIADKLRDPGLLPLSVSINAFINETNALADYIVPDTITYESWGVSAPWADVQAKASTVRWPAVAPRVARTANGEPVCLESFLIACAKRLGMPGFGADAIAGRDGRRHALDTASDFFLRGMANMAYAGGAPVAEASEDDLALTGVDRHADLLRRTLQDDEWRRVALLMSRGGRFDAAEDVWREGRVHPPYRKPLHVWSEDLARMRHAMTGEPYSGCPTWYPTRLADGRAMREQYPQADWPFLLSSFKSNLMSSMSIGVSRLRQVHPHNPVSISRADASRLGIGNGDAVRIVTPGGAVTGLALVRDGVQPGAIAIEHGYGHTELGARAHVVDGRPMPHDPALAAGVNLNDLGFGDATRALRDNVWIDWVSGAAVRQGLPARLEKA
>NC_018829.1|WP_015041174.1|1300645_1301680_-|polysulfide-reductase-NrfD
MRISELITPVYDAAWLPWAVQYFFLIGISAATALTAAACAFGRPGSARARLLPAAIAVLAVSAVAAPVSLLADLHQPGRFWHFYTQATPWSWMWLGALLLPLYAALALGLCAAWWLGWRRAMRALAVPLALSALSILVYTGSEVMVLRSRPLWHTVFLPINFALTGWLGALGAMLLLGRWLPGGLAAVPMALLRRLAMAALAALAASAGAWAVLGLLGHEPSFDAALRLFAQFPAWRASLAGAIATGLCMAALLQMRPARLAGPAASLALALTLLAAAWIFRWVVFMNVQGVPKYGAGLYLYDMPWGSDGLLGMAGVLGLCVALVAALAWALERFPARTAAPAR
>NC_018829.1|WP_015041175.1|1301693_1302467_-|4Fe-4S-dicluster-domain-containing-protein
MHNAPSSDRPPAPGKRGFLKELLGLAATATVIPIAPEARAGMNAQPPRRPGAAGKRYGMVVDLRQCIGCQACTVSCSMENLPPIGQFRTTVLQYEVLPDDGGPCSMVMLPRLCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADKCTFCEHRLEAGLLPACVESCVGGARVIGDLNDPASAVSRLLAEHRDEVKVLKPDMRTDPHVYYIGLPDAFVNQIDGQAGVRLAGRH
>NC_018829.1|WP_003809146.1|1302782_1303136_+|EF-hand-domain-containing-protein
MKKTIIASAACAALLATSGAVLAQSGASLTPDQLQHLDTDKSGGVSQKEYQAFMEASFAKLDANGDGSLTRQELPQEVSDAQFTAMDANKDGRVSRQEFLGQVMRDFATASRGGELK
>NC_018829.1|WP_003819659.1|1303158_1304085_-|alpha/beta-hydrolase
MTQSSQTTSPSADAHVKHRYLDLDELRIFYREAGPADAPVVLLPHGYPCSSFQYRDFMPALADQWRLLAPDFPGFGYSDTPDTARFACDFEHYTDFLQQFAHALGLPSYALYLHDYGSQIGLRLAMREPDKVSGLIIQNGDIYEDELGPRYAPLQAYWADPTLEGRYKLSLAVSEEGFRDEFLNDLPEEQAECITPDMWKLAWALLREPRRREIMVGLMEGLEDNLAWFPRYQAYLRERQPPTLIVWGVHDGYMPEAAARAYLRDLPDAELHLLQAGHWALETHLAPIVALTRAFLQRVHATPNFPPP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_4

1417770-1417872

Orphan

Consensus_repeat	Method
GGGGACAGGCGCCTCGCGCATCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_4

>merge|NC_018829|4|1417770-1417872|CRISPRCasFinder
GGGGACAGGCGCCTCGCGCATCGGGGCAGGACGGAAGTGCCTGTCCCGGCGGGGACAGGCACCCTTCGCTCCCCATGCGGGGACAGGCGCCTCGCGCATCGGG

>NC_018829|4|4|1417770-1417872|CRISPRCasFinder
GGGGACAGGCGCCTCGCGCATCGGG	GCAGGACGGAAGTGCCTGTCCCGGCGGGGACAGGCACCCTTCGCTCCCCATGC
GGGGACAGGCGCCTCGCGCATCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_015041213.1\|1429300_1430722_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NC_018829.1\|WP_003809396.1\|1413943_1414417_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NC_018829.1\|WP_015041210.1\|1411275_1412919_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NC_018829.1\|WP_003809411.1\|1417939_1418875_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NC_018829.1\|WP_004568237.1\|1422495_1423569_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_018829.1\|WP_003809398.1\|1414406_1415429_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NC_018829.1\|WP_004568238.1\|1421362_1422499_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_018829.1\|WP_003819788.1\|1423726_1425163_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|224938
NC_018829.1\|WP_003819789.1\|1425253_1425895_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NC_018829.1\|WP_010930148.1\|1410229_1411279_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381328
NC_018829.1\|WP_003809388.1\|1407417_1408116_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_018829.1\|WP_015041211.1\|1415425_1416853_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_018829.1\|WP_033448575.1\|1412915_1413803_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226910
NC_018829.1\|WP_015041035.1\|1408275_1409259_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NC_018829.1\|WP_015041212.1\|1426489_1429234_+\|pertactin-autotransporter	unknown	unknown	gnl\|CDD\|273608
NC_018829.1\|WP_003809416.1\|1420871_1421216_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_018829.1\|WP_003819780.1\|1417009_1417738_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239483
NC_018829.1\|WP_003819782.1\|1418924_1420805_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NC_018829.1\|WP_003819771.1\|1406035_1407421_-\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NC_018829.1\|WP_003819793.1\|1430986_1431703_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_015041213.1\|1429300_1430722_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	4.00649e-174
NC_018829.1\|WP_003809396.1\|1413943_1414417_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	3.20839e-53
NC_018829.1\|WP_015041210.1\|1411275_1412919_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	4.94075e-170
NC_018829.1\|WP_003809411.1\|1417939_1418875_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	7.49349e-144
NC_018829.1\|WP_004568237.1\|1422495_1423569_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_018829.1\|WP_003809398.1\|1414406_1415429_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	4.19811e-141
NC_018829.1\|WP_004568238.1\|1421362_1422499_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_018829.1\|WP_003819788.1\|1423726_1425163_+\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	2.7893e-89
NC_018829.1\|WP_003819789.1\|1425253_1425895_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	6.55206e-126
NC_018829.1\|WP_010930148.1\|1410229_1411279_+\|aldo/keto-reductase	gnl\|CDD\|381328	cd19102, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	2.24667e-143
NC_018829.1\|WP_003809388.1\|1407417_1408116_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.67018e-41
NC_018829.1\|WP_015041211.1\|1415425_1416853_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_018829.1\|WP_033448575.1\|1412915_1413803_-\|CBS-domain-containing-protein	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.11721e-107
NC_018829.1\|WP_015041035.1\|1408275_1409259_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.99036e-23
NC_018829.1\|WP_015041212.1\|1426489_1429234_+\|pertactin-autotransporter	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.71841e-112
NC_018829.1\|WP_003809416.1\|1420871_1421216_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	5.53938e-43
NC_018829.1\|WP_003819780.1\|1417009_1417738_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239483	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.	6.13555e-75
NC_018829.1\|WP_003819782.1\|1418924_1420805_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NC_018829.1\|WP_003819771.1\|1406035_1407421_-\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	1.16369e-63

>NC_018829.1|WP_003819780.1|1417009_1417738_+|phosphatase-PAP2-family-protein
MTAEPITAFPPPKSGLPGQGLAGLLRRCLVPVLLLLGCAAWLDRPLTLWINRSVSPQVNTVFDYIGNLGDSGTYVALGLAAYILGLQGMLRGWAVPWGWTCEKIARAGMLLLATLTAGGLATWVLKNVVARARPEVLLDDGIYGMGRMFAGNPFNSFPSSHTQTAFAVAAVLGILAPRWRWPALALAALVAISRVINRDHYLSDVCAAALIAVVAAYAIKPYVLSPRYTWPLRAPWRWRKRG
>NC_018829.1|WP_015041211.1|1415425_1416853_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MQETTVKRDGASPSDAGTPATAAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGRTENNRIVNFPGVPRLIGHMVDVVVTHAHTNSLRGRVAGIERDTSGAE
>NC_018829.1|WP_003809398.1|1414406_1415429_-|PhoH-family-protein
MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGVKLARRGSRVTIEGEQAELAGRALRRFHEQATHRALSVDDIQLGLVEIGVGRPVEVQADPRELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGKTWLAVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFERVQRLFEKQTIEIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITGDPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTSRDVVRHPLVARIVDAYDQAAANGD
>NC_018829.1|WP_003809396.1|1413943_1414417_-|rRNA-maturation-RNase-YbeY
MATELSLSVQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGAELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARGDIVVCVPVLAREAREQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA
>NC_018829.1|WP_033448575.1|1412915_1413803_-|CBS-domain-containing-protein
MSDPYPATEAHAQRAAKSSSKSLLDRLLSLVRREPEDREGIKAILEAAHERALLDAESYAMIKGALAVSERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLTASTDISHFNATFATDLPDDEYDSVGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRALWLRVRRNAGAQPPASAAE
>NC_018829.1|WP_015041210.1|1411275_1412919_-|apolipoprotein-N-acyltransferase
MSPAGKGPAWRQPAILAAAGAAHALSFAPDPLPAWSLAPVQVIALAVAAHASLQAPSARRALARGWLFAMFSFSLGLYWLYVSMHDYGGLAAPLAAAGVLALSAFLALFPGLACAAARWLCPPHWDASPPARARRTLYTAATWAACWAALEWLRAVVLTGFPWLNIGYAHVDSPLAGWAPLLGVHGMALLAAFAAAALAGLWQSASGRIDSRQALAAGVALLLAGAGWLLGQFSWSRPEGKPLHLRLVQGNVEQSQKFDPALLETGLRRHLELASLPPRPGEPKPDLIILPETVLPVFQDQLPASVWDAWIEVARRADTRIAMGVPLHTQPDGATGHRYTNSVIGFDASTPVEQLRTGTTAMRYDKQHLVPWGEYVPPGFRWFVDMLDIPLGDFDRGAARQPSFDIAGQRIAFNICYEDLFGPELLPALQDGPDGRPGATIMANVSNLGWFGNTWALRQHLQIGRLRTMETARPMVAATNTGITAAIDARGRVAAALPADRAGVLPVAVQGMTGLTPYARFGDKPALALIGLLLIAAAARGRRPRQP
>NC_018829.1|WP_010930148.1|1410229_1411279_+|aldo/keto-reductase
MSTSFPTQRLGATDMRITRVGFGAWAIGGPGWSVGWGAQDDGESIRAIRHAVNRGINWIDTAAVYGLGHSESLVGRALAGMPPSERPYVFTKGGLVGSPADPMAKPRRIGAPDSLRREVEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAGKVRHVGLSNHNLAQVQAAEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSGLLSGAFSAERAAALPEGDWRARNAEFMAPRLAANLEFADALKPIAQHHGASVGAIAVAWALAWPGVTGAIAGARSAEQVDGWLGAATLELDSDDMRQIADALARTGVGGGPLLPPPDEAALALTARP
>NC_018829.1|WP_015041035.1|1408275_1409259_-|IS110-family-transposase
MFFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALHDAQVRVSLVNPAQARDFAKALAMRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALGKDLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDRELLNSIPAIGPQAGNAILAVMHNRRIDSAQTLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNA
>NC_018829.1|WP_003809388.1|1407417_1408116_-|GntR-family-transcriptional-regulator
MKEKPITAIDKNGIDAPLTDVVYQRMLDGIYAGGLPPGGVINEVELAREFGVSRGPVREAVRRLQGIQIVTREPYMKARVVAMSAESALELFQMRMGLEGVACFLATQRMSDADIAQLQRDMDAHYQSWAARREGAPNGEERHFDLHERIVRASGNKRIIAALCEDLYHLLRIYRRHSGSALERKDDAYDEHWQIVRAIASRDARLAESLMRSHIERAANHVASQLREPAIQ
>NC_018829.1|WP_003819771.1|1406035_1407421_-|MmgE/PrpD-family-protein
MTPALPAAPSDRFAAGLAEACQFVATLTWDAIPAAVRQRAVDVLCDDLAAMAAAAPEPELRRYAALLTARAGAAESPLISPALPRVGRMEAASWNALAGNWCELDEGFRLAICHAGIYTLPALLAEATATRARLREVLTALTGAYELVTRCAMSFHVMPPPVHGHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGAVNGMQCADWAECGFGGAPASMEEVCAGIVKASLREGEITRELGTRWSLLHGYQKLYSCCQHGHSAVQACLALRADPAFEPDRVRAIRLDTHPLALTLDTVHPSTTLGARFSMPHMMAAALALGTGSAAAFSQSTLSDPAVAALREKVRMRLADAPMPAPHDRPAWLEVELDDGRVLRASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALARQA
>NC_018829.1|WP_003809411.1|1417939_1418875_-|protein-translocase-subunit-SecF
MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQSETVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVAGVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKASVQEVINSAITQTISRTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMGVKREDLVKPVKKDGDEVEIA
>NC_018829.1|WP_003819782.1|1418924_1420805_-|protein-translocase-subunit-SecD
MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLVADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGSKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVVLTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN
>NC_018829.1|WP_003809416.1|1420871_1421216_-|preprotein-translocase-subunit-YajC
MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMKRQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSYITVEVSELADKPVEVVMQKTAVSAVLPKGTIKAL
>NC_018829.1|WP_004568238.1|1421362_1422499_-|tRNA-guanosine(34)-transglycosylase-Tgt
MTGLQFELLATDGGARRGRLTLNHGVVETPIFMPVGTYGSVKAMLPHELEDIGAQIVLGNTFHLWLRPGTAIMEKHGGLHGFMQWDKPILTDSGGFQVFSLQGMRKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASIDEAARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYETLRDESLAGLAEIGFHGYAIGGLSVGEPKEDMMRILAHVTPRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCTHFSRAYLHHLQRANEITGARLNTLHNLHFYLAIMGEMREAIAAGRFEAWRAQFAADRARGVD
>NC_018829.1|WP_004568237.1|1422495_1423569_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MAAAFHRTYRVPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHLDAASRLHDRRFPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGKVEVLVERITAPDRALAHVRASKSPGPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYITHAADATDERRYQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQPVRVQNLAEHIMHAEWYTVPEATVAAIARARAHGGRIVAVGTTSVRALESAAAQAQDGPLAAAQGDTRLFITPGYRYRVVDALLTNFHLPQSTLLMLVSALAGVEPIRRAYAHAVAERYRFFSYGDAMFIETPAP
>NC_018829.1|WP_003819788.1|1423726_1425163_+|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSLVAAWKATKLPDQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVTTWAALSELGPSYAWRTEFLTEPGNRPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVAIDPGAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSDVRCPGPPVVGTEPVVTQQGVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWRELGGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRSNNVMARTLLLTLGAERGRRPATVESSGVVARAVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEFISSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNHENAAAVRSFDDALVAWLAEQ
>NC_018829.1|WP_003819789.1|1425253_1425895_+|uracil-phosphoribosyltransferase
MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATKDMPLAPASVEGWCGTVEVDKIAGKKVTVVPILRAGIGMLDGVLSLIPGAKVSVVGVARNEETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLVSAPEGIDAVLKAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE
>NC_018829.1|WP_015041212.1|1426489_1429234_+|pertactin-autotransporter
MNMSLSRIVKAAPLRRTTLAMALGALGAAPAAHADWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLFDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQVERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGGVPGGAVPGGFGPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVQLTLTGGADAQGDIVATELPPIPGTSIGPLDVALASQARWTGATRAVDALSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPRGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPLPPQPPQPQREAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGNSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVRTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW
>NC_018829.1|WP_015041213.1|1429300_1430722_-|uroporphyrinogen-III-C-methyltransferase
MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRLDPALAALAEQGGIARLDGGFEPAWLAGAWLVVAATDDRAVNAAVSEAARARRVFCNVVDDAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLGALAARYRPRIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVGAGPGDPGLLTLKALRALNEADIILYDRLVSEGVLALARRDAERVPVGKLPGEDHDATQARIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRAHDVPYEVVPGITAALACAAYAGIPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEHGRAPATPFALIENGSRPEQRVVTGMLADLPEIARRRGVRPPALLVIGEVAALADTLQWFGQHQRGLPGPQALAA
>NC_018829.1|WP_003819793.1|1430986_1431703_+|hypothetical-protein
MMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLGADLGFTEVSRTNGDNCRARVQGMATFSYAGLPPGKSRLDYLMTVKNGQATFVKYAEAGEQPRSEGQFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEKTVGARQDLSTALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQDIDQAGIKSSVEITQLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_5

2255686-2255771

Orphan

Consensus_repeat	Method
CTGTCCCCGCCGGGACAGGCACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_5

>merge|NC_018829|5|2255686-2255771|CRISPRCasFinder
CTGTCCCCGCCGGGACAGGCACACCGCGCTACGCCATGAACGGTTGACTGCCAAGACGGTATCTGTTCCCGCCGGGACAGGCACAC

>NC_018829|5|5|2255686-2255771|CRISPRCasFinder
CTGTCCCCGCCGGGACAGGCACAC	CGCGCTACGCCATGAACGGTTGACTGCCAAGACGGTAT
CTGTTCCCGCCGGGACAGGCACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_003816564.1\|2264551_2265640_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_018829.1\|WP_003816566.1\|2263469_2264552_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_018829.1\|WP_076879805.1\|2250853_2251654_+\|aldolase	unknown	unknown	gnl\|CDD\|180832
NC_018829.1\|WP_003810890.1\|2249368_2249842_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
NC_018829.1\|WP_003816577.1\|2257686_2258658_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NC_018829.1\|WP_003816586.1\|2250097_2250718_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NC_018829.1\|WP_014905911.1\|2255798_2256608_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_018829.1\|WP_003810917.1\|2256703_2257648_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NC_018829.1\|WP_010931059.1\|2255244_2255619_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NC_018829.1\|WP_003816581.1\|2254445_2255138_+\|DUF2238-domain-containing-protein	unknown	unknown	gnl\|CDD\|378345
NC_018829.1\|WP_004568506.1\|2254036_2254453_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_018829.1\|WP_003810921.1\|2258748_2259186_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_018829.1\|WP_015041400.1\|2247326_2249372_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NC_018829.1\|WP_004568507.1\|2253293_2253926_-\|7-carboxy-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275301
NC_018829.1\|WP_004568504.1\|2260911_2262516_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NC_018829.1\|WP_033447074.1\|2262555_2263344_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NC_018829.1\|WP_003816584.1\|2251708_2252800_+\|TRAP-transporter-substrate-binding-protein-DctP	unknown	unknown	gnl\|CDD\|270400
NC_018829.1\|WP_003810899.1\|2252821_2253265_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|376501
NC_018829.1\|WP_003816571.1\|2260207_2260897_+\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NC_018829.1\|WP_004568505.1\|2259244_2260126_-\|NRDE-family-protein	unknown	unknown	gnl\|CDD\|377554

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_003816564.1\|2264551_2265640_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	7.16154e-120
NC_018829.1\|WP_003816566.1\|2263469_2264552_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	5.09179e-108
NC_018829.1\|WP_076879805.1\|2250853_2251654_+\|aldolase	gnl\|CDD\|180832	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional.	6.37491e-166
NC_018829.1\|WP_003810890.1\|2249368_2249842_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	5.11244e-19
NC_018829.1\|WP_003816577.1\|2257686_2258658_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.30432e-133
NC_018829.1\|WP_003816586.1\|2250097_2250718_-\|cupin-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.01402e-16
NC_018829.1\|WP_014905911.1\|2255798_2256608_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.32527e-54
NC_018829.1\|WP_003810917.1\|2256703_2257648_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	6.63687e-70
NC_018829.1\|WP_010931059.1\|2255244_2255619_+\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	8.27238e-19
NC_018829.1\|WP_003816581.1\|2254445_2255138_+\|DUF2238-domain-containing-protein	gnl\|CDD\|378345	pfam09997, DUF2238, Predicted membrane protein (DUF2238). This domain, found in various hypothetical bacterial proteins, has no known function.	1.33959e-64
NC_018829.1\|WP_004568506.1\|2254036_2254453_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	1.35747e-65
NC_018829.1\|WP_003810921.1\|2258748_2259186_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00135235
NC_018829.1\|WP_015041400.1\|2247326_2249372_-\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	1.65628e-173
NC_018829.1\|WP_004568507.1\|2253293_2253926_-\|7-carboxy-7-deazaguanine-synthase	gnl\|CDD\|275301	TIGR04508, queE_Cx14CxxC, 7-carboxy-7-deazaguanine synthase, Cx14CxxC type. In the pathway of 7-cyano-7-deazaquanine (preQ0) biosynthesis, the radical SAM enzyme QueE is quite variable. This model describes a variant form in which the three-Cys motif that binds the signature 4Fe-4S cluster takes the form Cx14CxxC, as in Burkholderia multivorans ATCC 17616. The crystal structure is known.	2.59667e-136
NC_018829.1\|WP_004568504.1\|2260911_2262516_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	2.68487e-157
NC_018829.1\|WP_033447074.1\|2262555_2263344_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	3.52825e-88
NC_018829.1\|WP_003816584.1\|2251708_2252800_+\|TRAP-transporter-substrate-binding-protein-DctP	gnl\|CDD\|270400	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold. This subgroup includes TRAP transporters that bind to ketoacids such as pyruvate and alpha-ketobutyrate, xylulose, and other unknown ligands. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.81983e-167
NC_018829.1\|WP_003810899.1\|2252821_2253265_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	2.78822e-38
NC_018829.1\|WP_003816571.1\|2260207_2260897_+\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	3.27534e-99
NC_018829.1\|WP_004568505.1\|2259244_2260126_-\|NRDE-family-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	6.32884e-86

>NC_018829.1|WP_010931059.1|2255244_2255619_+|MAPEG-family-protein
MNATAAFLLAAALLPLVPAIAAKAGGRRYDNNDPRPWLAGQAGWRARANSAQANTFEALPFFFAAVLYALHTQAPAATLHVLMGAWLVARLVYVALYIGGRGNLRSLIWLAALLVNVAILLAGS
>NC_018829.1|WP_003816581.1|2254445_2255138_+|DUF2238-domain-containing-protein
MTEARAGLFARRRYLPALAVLYAALWLALAIEPHDRSDWLLENALVLGFGVALYATRRWFVFSRVSYTLIFLYLCLHAVGAHYTYSLVPYDAWWQRLTGHSLDQLLGWERNQFDRLVHFSYGLLLAYPIREIFLRVVEVRGFWGYLLPLDVALSTSALYELIEWGAAEFFGGELGVAYLGTQGDIWDAQKDMALAGLGALIAMLLTALFNRGARRDPARDWVDRMKPGHT
>NC_018829.1|WP_004568506.1|2254036_2254453_+|aminoacyl-tRNA-hydrolase
MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRASSLPESVKETVLALADRRISSDGVIVIKAQTHRSQEKNRADAVERLLALLREALRPVRPRRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD
>NC_018829.1|WP_004568507.1|2253293_2253926_-|7-carboxy-7-deazaguanine-synthase
MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRASAACTFCDTDFVGTDGQGGGKFADAAGLADAIAACWGDHPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFAHLAFEHFFLQPMDGPARAAHTAQAVQYCLDHPQWRLSLQTHKYIGIP
>NC_018829.1|WP_003810899.1|2252821_2253265_-|6-carboxytetrahydropterin-synthase-QueD
MISVTRRLEFDAGHRIPDHNSQCRNLHGHRYVLEVTLSGDVVQAPGASDNGMLMDFSEIKRIARTHIVDVWDHAFLVYEGDHAVRGFLDTLPDHKTVVLDRIPTAENLASIIFATLAPHYHGHYGADLRLTRVRLYETPNCWADCGS
>NC_018829.1|WP_003816584.1|2251708_2252800_+|TRAP-transporter-substrate-binding-protein-DctP
MQRRRFLTAAAAGAGSAVLAAPAVAQEAPTIRWRMPSSFPRSLDTVWGAAEAITARVSELTDGKFAIRAFPAGELVPPLQVLDAVQNGTTECGHTAGFYYMGKEPALVFDTGVPFGLTPRQHSAWVLQGGGQALIDELYAGFNAIAIPCGNTGAQMGGWFRKQMRTPDDFKGLRIRTPGLLSMVYQKLGAIPQQIAGSDIYPALEKGSLDAVEFVGPYDDEKLGFAKVAQYYYGPGVMELGANLCLNVNRESWQSLPPRYQVALRAACAMAGEELLAKYDAHNIPALKRLVGQGAKLQSWSPEIMAAMQKATREVLEEYAGKNPRFAKVLESWRAFRADQLLWASVNDGAAERYLLATRENGL
>NC_018829.1|WP_076879805.1|2250853_2251654_+|aldolase
MESMMSSSYTVQDKDVLRARVDREIESRVSEPQWTRAQKMALACRMLAEQGHWHGGLAGQITARGDEPGTYWTLPFGVGADEARASELILIDEDLNPLDGKSLPNPANRFHIWIYRHRPNVQCIVHTHPPAVSALSMVGEPLVVAHMDATPFYNDCAYLPQWPGLPIGDNEGEVISAALGEKRAILLANHGLLTAGSSIEESAVMALWMEQAAMLQLRARAIGPVKAVPGELAQESHDFLVKPKIQSLTFAYFARRVLRAAPDCLD
>NC_018829.1|WP_003816586.1|2250097_2250718_-|cupin-domain-containing-protein
MASCVLTHSPPPPMTAKSPPIPAPSPEQIGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSASVGTLHTVAGALGSSLSALLGEADPQTEIQIVRAADRHRMTTAPGPGEHIYEAITLGSSHSGLSVMVVEVGTHGAHTEAHHGGDELIFVLDGRIRVHFGGHTVLLERDDSVRFPGYLPHSLSAEGRKLARALVVIASG
>NC_018829.1|WP_003810890.1|2249368_2249842_-|MarR-family-transcriptional-regulator
MKTATDNRLMAMTANLMVLSRAYRSAADKALADFGLSQATAWPVILTGRLGDGVRQGALAEALGVEGPSLVRVLDQLVAAGLIERREDPQDRRARTLHLTPAGQSLREQVENVLVQLRRQLFQGIADADLETCLRVFDSLKSALGRESAAAREDYRP
>NC_018829.1|WP_015041400.1|2247326_2249372_-|FUSC-family-protein
MKLPTADEAVFSIKCYLGAMLALYLAYSIGLPRPFWAMTTAYVVAQPWSGAVRSKAVYRLGGTFFGSAMTIYTVPRLANYPVLMTLAMVLWVGLCLYIAVLDRTPRSYLFMLAGYTAAMIGFPSVTDPALVFDTALARVEEISLGIICATLVHSVVLPRGIGRAMMGRLDATVRDARSWIQDVLNQRGAAQHARDRRTLANDITQLRLLSTHVPFDTGNIRWTANALRAMQEHITALTPAVSAVEDRLQALQAQGRALPPPAARVLADISAWMDDSAHATREQAVQLRAALTRLAPAIDRQSGWHDALLASLVARLRELVDSYDACLVLRQDIHAGLGGAPTGRTRRLTRGAALHRDHGLALLSALAAALAISVCCLFWIGTAWTNGATAAMMAAIFSCFFAAQDNPVPGIMQFLTYTIYSIPLSALYLLGIMPALHSFEMLALAIFPVAFVTGVYIARPTTTGKAMAVFFGLSGTLALQDTHAADLVSFVDTIVAQIIGVAVAAIIAAVFRTVSAEWSARRIQAANWKELAALAGAGRAPARLDFTARMLDRIGLLQPRLALSKRRDDQLADDALQDLRVGKDIAELQRARRHLPMADPAIQPVLRTLAGLFRKRPGRLGGERPAELLQTIDRALYSVSNTPVAHAARERAVVALVGLRRAFFPEAAAYRPGRDVESPAS
>NC_018829.1|WP_014905911.1|2255798_2256608_-|IclR-family-transcriptional-regulator
MKNIPASAPRDTAQSLRRSIEILKALSAPMKRGFSLSELSRMTGLPHPTVLRLLRHLTGLGMVAWDPATKIYRLGTLTFELGLAAAEHCDIRGLCGDSLDRLQAETQDTCYLTMRSGFDAVCIDRREGASPIRVLTLDIGSRRPLGVGAAGLAILDCLPEEEAETVIQASESKLDRYNRMSTDIMRMLLQETRERGYAVCGNWVTLGVTAVAVPICIEDGRPIGSLSVSAVSHRMPADRWPGIARALRAEMHEIHRKLQGPSSRPGYGG
>NC_018829.1|WP_003810917.1|2256703_2257648_+|dihydrodipicolinate-synthase-family-protein
MAARFPGYVPAGVIPAALMPFNEDLSIDEKSLRAHIRDLASVRGISALCVNGVSQEIPGLTLDEQRRALDVMADEVGDQVPLMHGVYAHGPLDAARIARQAEAGGASCLLVFPPAVFARGAAMLPEMTLGHYKAIADATDLPLIVFQYETSTGMAHPLDTLVKLAEAVPSVMAIKDRSNNPIEHERNIRVLQSLARPVNVLTTHSAWLMPSLVLGCNGILSGSGSVHADLHVALWEAVQANDLAAARAINDQIYPMASCFYSAPTLDMHTRMKEALVMLGRLPSGRVRLPWVDLSDAERARVRAALVQAGRLPA
>NC_018829.1|WP_003816577.1|2257686_2258658_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MRVMQKGLMAALLLGSAFASAAAADSFPQRPVTIVVPFTPGGAVDIVARTVAAGLSEQWSQSVVVENKAGAGGAIGIQSVARAKPDGYTLLLGSVGPVTVNPSLGPVGYDVAKELAPVVLLAKTPAVLVTLPSAPVDDVAQFVKQAKAQPGGLNYGSAGTGNITHLVSEYFLSSAGLAANHIPYKGSAPAITDMLGGRLDFMFDVVPTAQPLIKSGKYKALAVTTIKRSDVLPDVPTLDELGYKGFDVSSWFSLMAPAGTPDAVIGQINAAVNEVLRSDASRERLAAIGAYSAGGTPEQLGEFVRSETARWKKLIDERGIRAN
>NC_018829.1|WP_003810921.1|2258748_2259186_-|carboxypeptidase-regulatory-like-domain-containing-protein
MNKRHERAWMAAALAAGSIALGGAVQAQGALPAVQQQGSVQFVTGGVGLDESEAMKAASKDYPLALTFAARGDGRAGLYLADVAVQILDRTGKPVLDAKADGPYLLAKLPAGTYRVKATSGGVEQTRQVSVRPGSTARAVFEWKD
>NC_018829.1|WP_004568505.1|2259244_2260126_-|NRDE-family-protein
MGKTQEFLRLRRIIALSSLLASRKSAMCLAVLALHAIPGLPVLIAANRDEFHARPTAEATRWPGSPAIYAGRDLQAGGTWMGVSDQGRYAVVTNFRDPRNIQPDAPSRGALVEAFLRGAASAQEYLHDVHARGARYNGFNLIVGDAGGAWYCSNRDGAPRRLAAGVYALSNHLLDTPWPKLARTKAAFERIIAAAPQPDLAALYAALADPTPAADHELPATGLALERERLLSSPFIVSPDYGTRSACILALHDDGRGELHERRFRPDGSIAGQTDLDFPWRAAHAELHRASCV
>NC_018829.1|WP_003816571.1|2260207_2260897_+|type-1-glutamine-amidotransferase-domain-containing-protein
MKILMVLTSHDQLGDTGRKTGFWLEEFAAPYYVFVDAGARVTLASPAGGQPPLDPKSDEPDAQTEATRRFAADTQAQQALAHTAKLADMRAADFDALFYPGGHGPLWDLAESAHSTALIETFLAGGKPVAAVCHAPGVLRHARAADGAPLVAGRQVTGFSNTEEAVVQLTEVVPFLVEDELVGLGARYSKAEDWHAYVVNDGLLITGQNPASSERAARAMLTALDNGRG
>NC_018829.1|WP_004568504.1|2260911_2262516_-|glycerol-3-phosphate-dehydrogenase/oxidase
MTAPTLAPIDPPARAQLLADLQGAPDWDVIVIGGGATGLGTAVDAAARGYRTLLVEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLNRNAPHLVWPLGFVVPAYSLLDQPFYGVGLKMYDMLAGKLNLAPSRWLSRGETLRHAATVAERVNGRALRGGILYYDGQFDDARLAIALMRTLYDLGGVALNYARAVGLTRTDGRVDGVTVADALGELRVTLRAKCVVNATGVWVDAVRRMDDPAAQTMVAPSQGVHLTLPRDFLPGEDAILIPKTDDGRVLFVVPWNGHTIVGTTDTPRTDLPLDPQAGQNEIDFILATAARYLSRKPTRADVTSVWAGLRPLVKATGEASTKSLSREHTIVVSKGGLVTVTGGKWTTYRKMAQDVVDTAIEHKLLAAAPCRTSELPLHGAPADGQPNGAPHGTPDSYYGTDLATLRALPGADRMLVKASALTEAHVRYAARHELARTVEDVLARRNRALFLDAEAALLAAPEVARILAQELGHDEAWIRATLAEFEAVAAHYRLA
>NC_018829.1|WP_033447074.1|2262555_2263344_-|DeoR-family-transcriptional-regulator
MTLNPRQSALVELVRTQGSATIEALARHFDVTLQTVRRDVNLLSEAGMLSRFHGGVRIESSTIENIAYRKRQGLHAEGKRRIAEAVARAVPDGCSLLINIGTTTEAIARALLRHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEATLDFIRQFKVDIGLIGISGIEADGTLRDYDFREVRVARAIIEQSREVWLAADSSKFQRQAMVELVHVSRIHRFFTDAQPQESLAQVLQDAGVRCDVAAQSAGAAAA
>NC_018829.1|WP_003816566.1|2263469_2264552_+|ABC-transporter-ATP-binding-protein
MQLVLDGIQLRAGSQVHLYPLSLQPAPGAMTVLLGATLAGKTSVMRIMAGLDRPTEGKVLVDGADVTGVPVRQRNVAMVYQQFINYPSMRVADNIASPLRLRGAADIPARVRAMAERLHIEHLLDRYPSELSGGQQQRVALARALVKDAPLVLLDEPLVNLDYKLREALREELAGLFAQGRSTVVYATTEPAEALLLGGHTAVLDAGRLLQYGPTAEVFHRPNSIRVARAFSDPPMNLFPARRANGGFMLASGVMVPCALPPPETGDDALTAGLRAGVFRTEARGADVALPGVVELAEISGSDSFVHVRTPAGPVVAQLTGVHRYPLDSRLTLHFDPADSYAFGPDGALLAAPRRAGGER
>NC_018829.1|WP_003816564.1|2264551_2265640_+|ABC-transporter-ATP-binding-protein
MASIELDLAHAYGPDPRGEDDYALLPLRFTFEDGGAYALLGPSGCGKTTLLNCVSGLLRPSQGRVLFDGQDVTGRTPQQRNIAQVFQFPVVYDTMTVADNLAFPLRNRGVPQAHIRERVGRIAEMLELSAVLERRASGLTADAKQKISLGRGLVRSDVSAILFDEPLTVIDPHLKWELRRKLKEIHHEFKLTLIYVTHDQTEALTFAERVMVMSRGRAVQVGTPDDLFERPAHTFVGHFIGSPGMNFLPAEWRDGALRIGSQRLEGLTAGQAEALAQGGPVKLGVRPEYLRLVAPHTPGALPVRVARVQDVGTYALLGAEFESIALRARLPLDAALPGAGDTVWLAVLNRHTCFYRDEELIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_6

2763889-2763995

Orphan

Consensus_repeat	Method
CTGTCCCCGCAGGGGGACTGGCACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_6

>merge|NC_018829|6|2763889-2763995|CRISPRCasFinder
CTGTCCCCGCAGGGGGACTGGCACCCGCTGACTTCCTGCGGTGCCTGTCCCCGCAGGGACAGGCACCCGGCGACACCTGTCTGTCCCCGCAGGGGGACTGGCACCCG

>NC_018829|6|6|2763889-2763995|CRISPRCasFinder
CTGTCCCCGCAGGGGGACTGGCACCCG	CTGACTTCCTGCGGTGCCTGTCCCCGCAGGGACAGGCACCCGGCGACACCTGT
CTGTCCCCGCAGGGGGACTGGCACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_015041551.1\|2770233_2772075_-\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_018829.1\|WP_003817198.1\|2761101_2761623_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
NC_018829.1\|WP_015041546.1\|2761633_2761975_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|377320
NC_018829.1\|WP_003811846.1\|2757604_2758051_+\|flagellar-export-protein-FliJ	unknown	unknown	gnl\|CDD\|235563
NC_018829.1\|WP_003817185.1\|2776472_2777606_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NC_018829.1\|WP_033456864.1\|2765967_2767692_-\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NC_018829.1\|WP_033447174.1\|2777608_2778298_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|139164
NC_018829.1\|WP_003811877.1\|2775435_2776455_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|139173
NC_018829.1\|WP_003811850.1\|2759523_2760096_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
NC_018829.1\|WP_003811861.1\|2763086_2763875_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NC_018829.1\|WP_015041545.1\|2758056_2759382_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|350657
NC_018829.1\|WP_015041547.1\|2761986_2762778_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NC_018829.1\|WP_015041550.1\|2768274_2770113_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NC_018829.1\|WP_004567192.1\|2767804_2768248_-\|lipoprotein	unknown	unknown	unknown
NC_018829.1\|WP_003811843.1\|2756136_2757612_+\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|274607
NC_018829.1\|WP_015041548.1\|2764190_2765789_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_018829.1\|WP_003817186.1\|2773719_2775366_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
NC_018829.1\|WP_015041552.1\|2772153_2773686_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|79176
NC_018829.1\|WP_003811859.1\|2762794_2763064_+\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NC_018829.1\|WP_003811852.1\|2760098_2761109_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_015041551.1\|2770233_2772075_-\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	9.37346e-133
NC_018829.1\|WP_003817198.1\|2761101_2761623_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.28468e-56
NC_018829.1\|WP_015041546.1\|2761633_2761975_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|377320	pfam04347, FliO, Flagellar biosynthesis protein, FliO. FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.	8.3076e-20
NC_018829.1\|WP_003811846.1\|2757604_2758051_+\|flagellar-export-protein-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	2.09708e-29
NC_018829.1\|WP_033456864.1\|2765967_2767692_-\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.24033e-126
NC_018829.1\|WP_033447174.1\|2777608_2778298_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|139164	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.	9.09378e-151
NC_018829.1\|WP_003811877.1\|2775435_2776455_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|139173	PRK12713, flgJ, flagellar rod assembly protein/muramidase FlgJ; Provisional.	0
NC_018829.1\|WP_003811850.1\|2759523_2760096_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	7.34941e-48
NC_018829.1\|WP_003811861.1\|2763086_2763875_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	2.66795e-75
NC_018829.1\|WP_015041545.1\|2758056_2759382_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|350657	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains. The flagellar hook-length control protein FliK is a soluble cytoplasmic protein that is secreted during flagellar formation. It controls hook elongation by two successive events: by determining hook length and by stopping the supply of hook protein. It contains an N-terminal domain that determines hook length and a C-terminal domain that is responsible for switching secretion from the hook protein to that of the filament protein, by interacting with FlhB, the switchable secretion gate.	1.95801e-22
NC_018829.1\|WP_015041547.1\|2761986_2762778_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	3.82732e-126
NC_018829.1\|WP_015041550.1\|2768274_2770113_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.37819e-128
NC_018829.1\|WP_003817185.1\|2776472_2777606_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NC_018829.1\|WP_003811843.1\|2756136_2757612_+\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
NC_018829.1\|WP_015041548.1\|2764190_2765789_-\|PAS-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.07334e-96
NC_018829.1\|WP_003817186.1\|2773719_2775366_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
NC_018829.1\|WP_015041552.1\|2772153_2773686_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|79176	PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional.	0
NC_018829.1\|WP_003811859.1\|2762794_2763064_+\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	6.73349e-29
NC_018829.1\|WP_003811852.1\|2760098_2761109_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	5.58762e-154

>NC_018829.1|WP_003811861.1|2763086_2763875_+|flagellar-biosynthetic-protein-FliR
MIAFTMEQLNGWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYAGLFLLGQQVLIGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSRLFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLALPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPFLERLFEQGLNTMNNVANGLAGK
>NC_018829.1|WP_003811859.1|2762794_2763064_+|flagellar-biosynthesis-protein-FliQ
MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQINEMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQLIGQIPMLVS
>NC_018829.1|WP_015041547.1|2761986_2762778_+|flagellar-type-III-secretion-system-pore-protein-FliP
MSISFRFSDTRPRAPWWPAMAAVAVAAAALWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGAPLHNFMLHQTRENDLTLFANLANLPAMEDPSQVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSFYQ
>NC_018829.1|WP_015041546.1|2761633_2761975_+|flagellar-biosynthetic-protein-FliO
MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVGGMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTLPAGQLPDPLPAAAGTFAAKLGQALQRGHRVDRP
>NC_018829.1|WP_003817198.1|2761101_2761623_+|flagellar-motor-switch-protein-FliN
MTDTNERPDQTGAGAPAPAADDWADALAEQNRAAAPTQADGLKPQDDWADALAEQNAAPAAAAPAVQPAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDDKYGIRLTDIITPSERINRLNSRR
>NC_018829.1|WP_003811852.1|2760098_2761109_+|flagellar-motor-switch-protein-FliM
MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPETVTAHVDGVPLMECGYGVFNGRYALRVQNLINYDDTDSNEAPDHD
>NC_018829.1|WP_003811850.1|2759523_2760096_+|flagellar-basal-body-associated-protein-FliL
MATTKTSTMPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAGTWYFMKRMQPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAPIFIPLEAFTVTLQNADSERILHVGITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAITEAVKRPFSPLPDGQYVTDALFTAFVVQ
>NC_018829.1|WP_015041545.1|2758056_2759382_+|flagellar-hook-length-control-protein-FliK
MSRNRTAAMTTATLPIPALTPAPGPAAQGGPAAAGKGPSFSQVLARQQGGKPGEAGTPAAPGAQAGAPAQGPATQNPAGAGKPGKPGDTAALPVDGQQEPAAETAADAATLAALAAQAAPAPALPLQALEIAAEAAAVNAQVAAATQAAGAAARQPAHAALLAGQAATPAAPAAAGAPPADTAPAMPPALPQAAQPAVAGQVAVAASAPNAPAAETAATPPAAPSLPHPLPSTGGTPEDGGEAAEPPATAPAQPQPLAAAEHGAALHAAAQAHIAARQAVGNPAPASLPAAAQPLGLEVASPVGSSQWGQELGRQLVTISHDARQGHHTAELRLDPPDLGPLRVSINLHEGVASAAFVSVHAAVRQAVEAALPQLQQALAQAGISLGQTSVGDQSAQQGFAEQQGRGAGASGGSAAGADSETVIVAATPARNADALVDTFA
>NC_018829.1|WP_003811846.1|2757604_2758051_+|flagellar-export-protein-FliJ
MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQLNMLQDYRQDYLQRMQTAMQSGMSAADCHNYQRFIATLDDAIGQQRHVLHRAEAHLNDGRLNWQQQKRKLNSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF
>NC_018829.1|WP_003811843.1|2756136_2757612_+|flagellar-protein-export-ATPase-FliI
MNPPALPLPADTAAVPVADRWQTQLQIGSIRAASTEPWLVSGRITRAAGLVLHATGLRLPVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLARSVVVAAPADVSPLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSLETREAYA
>NC_018829.1|WP_015041548.1|2764190_2765789_-|PAS-domain-containing-protein
MRVNLPIYDVETKLREDQYLISRTDTKGRIVYANPAFVEVSGFERDELIGKAHNLVRHPDMPPQAYEDLWRTLQAGQSWLGVVKNRRKDGGFYWVLANATPIYEDGEVVAYSSVRVKASDEQIEAAEAAYAQLRAGTLRGRRLWRGQVVPTGWRRVLAAAAFPLRGGLSARMLRQSLLAALAVAGAGAAALAPWWPQWSGAQAGAAGAAVALAALGVLAMQWRLRGAVLRTMEGAADMARQVAAGNLTTQIGSDANDEVGKLAFSLDVMRKSLVGIARDVYGGIEGTTQAALGIARGNQELSARTDDQSASLQNTAASMEELTSTVRQNADNARQANDLAARSMDVARRGGDAVGRVVDTMHGISDSSRKIADIVNIIEGIAFQTNILALNAAVEAARAGESGKGFAVVAGEVRSLAQKSAQAAREIKDLIEDSVSRVTEGSLQAEQAGATMQEIVDAVRGVTDIIGEISVASQQQASGIEQVDEAVSQMDGMTVQNSGLVQQLGNTVAQLGQQSAALRETIRVFRMAREQG
>NC_018829.1|WP_033456864.1|2765967_2767692_-|Tar-ligand-binding-domain-containing-protein
MEAGFETGAKKVKANKRARAPKQKRSLRLRDAHVGSLLMWVLGVFALMIAGVGAMAAYFLQQNYQSVGEINALTDRVAQVEIINSDMLRARVSLMVSARQLQESGWGSGANAAQAAAASLKDATDLLAGVRTRFADFQKNMLEDDTGRQLSMNLVRRYRSYIDDGVDTMVEALRSEDYSTFYMVNNEYGTPRSAAFIAAIGDFSKYINEQQQATMEAARTNFDRALMAVTAAVVLALVLMLVARTVFGRLVVRPLKEAGQHFDKIAAGDLTARVEVRNSNEIGQLFAALKRMQESLTRTVATVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEELASTVKQNADNARQANQLAASASDVAERGGSAVSEVVSTMDGISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVAVFKINTGEVIEVPAHQLSGYAAPLVAQS
>NC_018829.1|WP_004567192.1|2767804_2768248_-|lipoprotein
MPRWIAGLGAMLAVLWLAGCAATGHNFDPGRLSRLTPGQTTLEEAARELGAPPDTIYGQRDGGVLALWQFKITFVTDGFYSRKEALLQFGPDGRLMRLVDSTNILLEPWERRKLLGPEPPWPAEPAVPQVAPQAAPVAIPVPAAPVQ
>NC_018829.1|WP_015041550.1|2768274_2770113_-|methyl-accepting-chemotaxis-protein
MFANLKVRTGLLLALVALALAALVSIALGWESVREGSRSLHALDSVSVQQGSLLKDAYAQMLRATIRADIAAVQRRGGDAAGALENERTVKQLMGEAKARIEAFRKVPKLSELGRSMETGLTSSFGSFAASLDEMMAALERNDDAAYLQLKNVKAGQASAAFAARLGEFSTNLDKLSSETLAAHETRETIMLYVYAALLLLIVGVIAGSYLYMTRAVVRPLQRASQQFERMAAGDLSARIEGNSRNEIGALLTALRHMQESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEELASTVKQNADNARQANQLAASASDVAERGGSAVSEVVATMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASDEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQHLAEAVSVFKINAGEVIDVSARQLAQQRQAPRVAAAPASAAAPEAPPEPAPASAPRLARPAARADVAAEAASVRRPARRPAATEPAARTTAAPSRRRPPADDDWESF
>NC_018829.1|WP_015041551.1|2770233_2772075_-|Tar-ligand-binding-domain-containing-protein
MWSNLKVRTCITLVLGLFLVAMLVSNGMAWLGMSSSNDKLERVNNAYSNQAVPAYDAYVMLLRARLNMVSSMMDLQEGRLKESADTLAHAQRQAGEARERFEAFLAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQRLGEFVQLNPSAQRLNTAFDTAASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCAGCGVFIGRAVLRPLKEAGQHFDRIAAGDLTARVDVRSTNEIGQLFAALKRMQESLTRTVTAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVAVFRINAGEVIDVSARQLAQQRQAPRVAAAPASAAAPEAPPEPAPASAPRLARPARPAARADVAAEAASARRPVRRPAATEPAARTMAAPSRRRPPADDDWESF
>NC_018829.1|WP_015041552.1|2772153_2773686_-|flagellar-hook-associated-protein-FlgL
MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGDLGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNTGTGQYSAVSFDGPRAGNYVGRDFRIEFTRDAVTDELQYSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQPEAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGLTGKNLSVAFLDDGAGGLLYSVTSTPPDPGLPANVPVRPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDLIGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRIQGNSLFSMGR
>NC_018829.1|WP_003817186.1|2773719_2775366_-|flagellar-hook-associated-protein-FlgK
MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGDRTVGITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQISTTVEQVNSYLERINDLNKQIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAFNITLQSGQTLLSGTTVYPLQAVPSASDPKRLAVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHRQGYDLDGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLTLTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVNNVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVASTVFDTLLGLR
>NC_018829.1|WP_003811877.1|2775435_2776455_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MSFVSYTPRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQFEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASPGIGLAQALLGQMQQGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDVLRSNRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELRHEDGSTSYNLFGIKAGASWKGKVVNVMTTEYVDGVAQKLVQPFRAYSSYEESFSDYARLIGNSPRYEAVTQAGNEIEAARRIQEAGYATDPRYAEKLISIMGQLRTSVARADFSGGL
>NC_018829.1|WP_003817185.1|2776472_2777606_-|flagellar-basal-body-P-ring-protein-FlgI
MTFPTSLSVLLIPLARAVLALALLGAGAAHAERLKDLASIQGVRGNQLIGYGLVVGLDGSGDQVRQTPFTQQSLTNMLSQLGITVPQGSNMQLKNVAAVMVTATLPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYAIAQGNLLVGGAGASAGGSSVQINQLNGGRISNGAIVERAVPTMYAQDGMVYLEMNNTDFGTTQNAAAAINRQFGAGTAMALDGRVIQVRGPLDPSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVMIEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNTQIEVRQDGGALQRVTTSANLADVVKALNALGATPQDLLAILQAMKTAGALRADLEII
>NC_018829.1|WP_033447174.1|2777608_2778298_-|flagellar-basal-body-L-ring-protein-FlgH
MLKTVLRLPVCAALLALAAGCAMIPPEPVVTGPLTAPPPPPPQPSARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGIINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQRFFLIASPF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_7

3950462-3950543

Orphan

Consensus_repeat	Method
CTGTCCCCGCCGGGACAGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_7

>merge|NC_018829|7|3950462-3950543|CRISPRCasFinder
CTGTCCCCGCCGGGACAGGCACCCGTCGTGCGCCATGAGCGCCATTGCCAGGACGGCGTCTGTCCCCGCCGGGACAGGCGCC

>NC_018829|7|7|3950462-3950543|CRISPRCasFinder
CTGTCCCCGCCGGGACAGGCACC	CGTCGTGCGCCATGAGCGCCATTGCCAGGACGGCGT
CTGTCCCCGCCGGGACAGGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_003814092.1\|3957461_3958361_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|179379
NC_018829.1\|WP_003814072.1\|3946907_3947282_-\|hypothetical-protein	unknown	unknown	unknown
NC_018829.1\|WP_003821189.1\|3945139_3946312_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NC_018829.1\|WP_015041809.1\|3947614_3950365_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_018829.1\|WP_003821185.1\|3953788_3954169_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NC_018829.1\|WP_004566462.1\|3940227_3941208_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340821
NC_018829.1\|WP_003814098.1\|3960516_3960936_-\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366663
NC_018829.1\|WP_015041810.1\|3958376_3960038_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NC_018829.1\|WP_003814085.1\|3954872_3955115_-\|hypothetical-protein	unknown	unknown	unknown
NC_018829.1\|WP_003821191.1\|3941406_3942663_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NC_018829.1\|WP_003821182.1\|3956342_3957347_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_018829.1\|WP_003814079.1\|3951772_3953698_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_018829.1\|WP_003814083.1\|3954176_3954731_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237621
NC_018829.1\|WP_004566468.1\|3946315_3946870_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_018829.1\|WP_003821186.1\|3950550_3951672_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_018829.1\|WP_003814063.1\|3943341_3943704_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NC_018829.1\|WP_003814061.1\|3942865_3943291_+\|DUF1841-family-protein	unknown	unknown	gnl\|CDD\|370177
NC_018829.1\|WP_004566474.1\|3955196_3956285_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NC_018829.1\|WP_003814065.1\|3943716_3944070_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NC_018829.1\|WP_003814066.1\|3944230_3945118_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_003814092.1\|3957461_3958361_+\|NAD-kinase	gnl\|CDD\|179379	PRK02155, ppnK, NAD kinase.	0
NC_018829.1\|WP_003821189.1\|3945139_3946312_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_018829.1\|WP_015041809.1\|3947614_3950365_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	7.90795e-64
NC_018829.1\|WP_003821185.1\|3953788_3954169_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.07863e-05
NC_018829.1\|WP_004566462.1\|3940227_3941208_-\|hypothetical-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	3.59109e-14
NC_018829.1\|WP_003814098.1\|3960516_3960936_-\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|366663	pfam01475, FUR, Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.	1.74636e-59
NC_018829.1\|WP_015041810.1\|3958376_3960038_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NC_018829.1\|WP_003821191.1\|3941406_3942663_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NC_018829.1\|WP_003821182.1\|3956342_3957347_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	5.93958e-145
NC_018829.1\|WP_003814079.1\|3951772_3953698_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_018829.1\|WP_003814083.1\|3954176_3954731_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237621	PRK14139, PRK14139, heat shock protein GrpE; Provisional.	1.18525e-78
NC_018829.1\|WP_004566468.1\|3946315_3946870_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.87052e-61
NC_018829.1\|WP_003821186.1\|3950550_3951672_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NC_018829.1\|WP_003814063.1\|3943341_3943704_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.60442e-23
NC_018829.1\|WP_003814061.1\|3942865_3943291_+\|DUF1841-family-protein	gnl\|CDD\|370177	pfam08897, DUF1841, Domain of unknown function (DUF1841). This family of proteins are functionally uncharacterized.	2.9417e-76
NC_018829.1\|WP_004566474.1\|3955196_3956285_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	3.4326e-159
NC_018829.1\|WP_003814065.1\|3943716_3944070_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	6.05638e-23
NC_018829.1\|WP_003814066.1\|3944230_3945118_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.30038e-45

>NC_018829.1|WP_015041809.1|3947614_3950365_+|insulinase-family-protein
MRLPLLSRRLNALLVSSFLAFQAGAASLPAGVSEVSSIEGITEYRLANGLRVLLAPDASKPTTTVNMTYLVGSRNENYGQTGMAHLLEHMLFKGTPAIRNALGEFSRRGLQANGSTSSDRTNYFASFAANPETLKWYLGWQADAMVNSLIAKEDLDSEMTVVRNEMESGENNPFRVLMQKMQAAAYQWHNYGKSTIGARSDVENVDIAQLRAFYHEYYQPDNAVLIVAGKFDPQTALADIQSSLGKLPKPRRSLPPEYTVEPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSGRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWRLFFLQRDRVRDAKLDDVQRAAVAYLVRSNRTEGRYIPTEKPQRAPLAQRADLAAVFKDYKGDPNFKAVEAFDPSPANIDKRTLRRTLDLPNGQVELALLPKATRGDRVQAELLIQFGDAEALRGQRVPLAAAAALLDRGTDKLSRQAIQDRLDQLQAEAAINGSGTNLVVNISTLGKNLPDVMALVLDVVRNASFPQDQVEEYKRQAITMVQDAMTDPTALASRALARHNNPWPADDVRYVPTFDEALEQLRSLSRDDLAAVSGKLYGAGRIKFSAVGEFDPAAVEAVLRKGLDGWRSAPAYTRLPDPYRAVPAQQFDIATPDKANAFYISRMPLQLQDTNADYPALYLANFLLGTSETSRLWHRVRETEGLSYNVRSNLSVSSYEPSANWTIYAIYAPQNRARLEKAISEELARALKDGFTDQEVRDGVVALLNYRNLARAQDDVLADTWVNYMQTGRSFQWSADMDRKLEALTPDQVNAALRKYLKPDAFSTAVAGDFTKKSAP
>NC_018829.1|WP_003814072.1|3946907_3947282_-|hypothetical-protein
MLTDIVTRALSQLLGNSLSGDVIKGRFRYAYASDDGRFVAILGHDLTTYVVDVDAQRYFAECAGVPCGFAGHVLEMEGAQEHGHPWPAVNDLFDLDMDGDEIAWRRCPGAVALAATRQAQSRVA
>NC_018829.1|WP_004566468.1|3946315_3946870_-|N-acetyltransferase
MNATPSPAPTGATLVDCTHDRHAAAILDIFNDAILTSTALYDYQPRALASMEAWFQAKRQGGFPVVGFEDAAGVLMGFASYGTFRAWPAYKYSVEHSVYVDRRYRGRGLGEALLRALIERARLQQVHVLVGGIDATNAGSVALHRKLGFVHAGTITQAGFKFGRWLDLAFYQLTLDTPLRPVDG
>NC_018829.1|WP_003821189.1|3945139_3946312_+|VWA-domain-containing-protein
MLIDFFYHLRAHKLPVSVQEYLTLLEALRQRLMAPTLDDFYFLARTALVKDESLYDRYDAAFGAYYRGIAAALPADRDIPLDWLIKEFEKTLTPEEKAAIEAHGWDKLMELFKQRLEEQQERHAGGSKWIGTGGTSPFGNGGYHPEGIRVGGDSAGNRTAVKVWDMRQFRDYDDQLELGTRNFKVALRRLRRFARQGADLELDLDDTIASTARNAGHLDLRLVPERRNTVKVLMLLDVGGSMDDHIARVEELFSAARSEFRHLDVYYFHNCPYENLWQNNRRRQNERFDTWDVLRKYNADWRLIIVGDATMSPYEILQPGGSVEHYNKEAGAVWLRRLLDAWPKAAWLNPEPTASWRYRQSIALLRDIMQDRMYPVTVAGLEQAMRQLSK
>NC_018829.1|WP_003814066.1|3944230_3945118_+|MoxR-family-ATPase
MPTSASSSSAPAQSARFEGTDRYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVARALDRPLLQWHIKSTTKAHQGLYEYDAVSRLRDSQLGDEKVRDIRNYIVQGTLWQAFEAPEPVVLLIDEIDKADIEFPNDLLRELDRMEFHVYETRQTVQARHRPLVIITSNNEKDLPDAFLRRCFFHYIRFPDRDTMRDIVGVHYPDIRQDVLRAALDTFFALREAPGLKKKPSTSELLDWLRLLLAEAIPAAEIDAHAATAVPVLAGALLKNEQDVHLLERLGAMARGAQRR
>NC_018829.1|WP_003814065.1|3943716_3944070_-|cytochrome-c
MKLRISMTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYSSLK
>NC_018829.1|WP_003814063.1|3943341_3943704_-|cytochrome-c
MKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAATANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
>NC_018829.1|WP_003814061.1|3942865_3943291_+|DUF1841-family-protein
MFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQLSIDHPRGIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
>NC_018829.1|WP_003821191.1|3941406_3942663_-|NADP-dependent-isocitrate-dehydrogenase
MSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVYGPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYAGIEYMAESEQAKDLIQYLQTKLGATKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLEGATQVSCSGFGQVMIDNM
>NC_018829.1|WP_004566462.1|3940227_3941208_-|hypothetical-protein
MAKPASDMPPYDKAAALRGLAGARRVALLMAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDIRPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVVITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPPQVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIHASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQADDRRQPVGVPWGKI
>NC_018829.1|WP_003821186.1|3950550_3951672_-|molecular-chaperone-DnaJ
MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMGGGFADAFGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDTCHGSGAKAGTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRRNKTLQVKIPAGIDDGMRIRSSGNGEPGINGGPPGDLYVEIHIKQHKIFQRDGDDLHCELTIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLRAKGIRGVRGSYPGDLYCHVVVETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS
>NC_018829.1|WP_003814079.1|3951772_3953698_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVTNPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVKADNGDAWVEVRGKKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYIISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLKITRAKLEALVEELIERTIEPCRVAIKDAGVKVSDIDDVILVGGMTRMPKVQDKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIPTRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPAPRGLPQIEVTFDIDANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELAQARNQADALVHATRKSLTEYGEKLEAAEKESIEAAIKDLEDILKTGDKAEIDAKVEALSTASQKLGEKMYADMQAQQQAQQQQAADNAKPVDDNVVDADFKEVKRDQ
>NC_018829.1|WP_003821185.1|3953788_3954169_-|thioredoxin-family-protein
MAAAPFDPAEVFQVFGMRRVDSASFDEQVVQAPGDDLRCVFLWGQDCYNCGIFKQTALLQRQALLALELSWFEADVYADEALGRRFSLHGVPTFVLYRSGKRLGRVTGWPGLPQFSAAMQRLRDGT
>NC_018829.1|WP_003814083.1|3954176_3954731_-|nucleotide-exchange-factor-GrpE
MTAPQEPVDSTPESGENAATPGLEDDLSAELAALRAELEAAQATVKAQQEQVLRAAAEAENVRRRAQEDVAKARKFGIESFAESLVPVKDSLEAALAQPDQAAQAWREGVEVTLKQLTAAFERNLLKEIAPAQGDKFDPHLHQAISSVPADQPANTVLQLLQKGYVIADRTLRPALVVVSAGQG
>NC_018829.1|WP_003814085.1|3954872_3955115_-|hypothetical-protein
MNPPRKPTIGTSGPPGHANLEEDQLERELDEALLETFPASDPIAITSEDERDEPDDKVDEALEDTFPASDPPAPAQPGKK
>NC_018829.1|WP_004566474.1|3955196_3956285_-|ferrochelatase
MFLRLFKYLWPERYLPETPAQDPFDENPPPCGPGRVGVLLVNLGTPDEPTRGAIRQYLGEFLSDPRVIEIPRYLWMPILHGLVLTMRPKKLAPRYAGIWMEEGSPLLVYSQRQAAGVRQGLAARGVHAEVELAMRYGKPSIPAAIAALRERGCDHILAVPLYPQYAASTTATVVDAVTRHAGRLRDQPALRFVKRFHNDPAYVEAQAGRIAEFWQAHGRPQKLVMSFHGLPRYSIELGDPYYRDCLDTARLLRERLGLREDEVEVTFQSRFGSARWLEPYTEPTLAELARQGVTEVDVVCPGFVADCLETLEEISQECRDAFVAAGGRQFRYIPALNDCPPWIEGLTDLVERQLRGWPTGNP
>NC_018829.1|WP_003821182.1|3956342_3957347_-|heat-inducible-transcriptional-repressor-HrcA
MDDRARALLKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHSPHTSAGRVPTPRGYRMFVDSLLAVRAYQFEPAHIGELLPVSEPSRAVNAAAALLSNLTQFAGVVLTPKRTQIFRQIEFIRLSDKRVLLIIVTPEGDVQNRILSAQRDYTEAELLEAGNFFNVHFSGKSFDAVRRTLSTELAQLRDDISRLMQAAVEAGAEAADDGEAVVISGERKLLDVTDIASDMDRLRKMFSLFEKKTDLLQLLDVSSRAQGVQIYIGGDSQLVPMEEVSVITAPYGLDGKVIGTLGVIGPTRMAYERVIPIVDITARLLSNALSHNQ
>NC_018829.1|WP_003814092.1|3957461_3958361_+|NAD-kinase
MYFPIVALIGRYQDTGLDAPLTALAQMLTQAGRRVLVEAETARNAGVSGYPVADWDEIGRTATLAVVMGGDGTVLGAARHLAPYGVPLIGINHGRLGFITDIPLQDAHDALGRVLEGNYQAEDRMLLQGGVWRGEQQMYSASAVNDVVLNRAGRGGMIEVRVELDGAFMYTQRADGLIIATPTGSTAYSLSANGPILHPGMNAMVLVPVAPQTLSNRPIVIPDSGVLNMTLTAMGRVEIGASVHFDMQTWSDLQPGDRITVQRAPHTIRFVHPEGYSFFSTLRRKLHWNLMPQATDNLE
>NC_018829.1|WP_015041810.1|3958376_3960038_+|DNA-repair-protein-RecN
MLRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERGDASMLREGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAYINGMPATIAQLRELGDGLVDIHGQHAHQSLMRPDAQRDLLDAHGGHAELRQTVAQAWKQWRALARQLDTAEQDAEALAAERDRLQWQSDELDRLGLGPDEWDALQTEHTRLSHAQSLLDGASRILEALDGEHDSAQHRLNGAAHQLQQMLRHDPALQGIGDELESARIAITEAVSDLNNYVSRVELDPQRLADVEARLSAVFETARKFKCEPHDLPALRDSLHGKLAEMQAASDVQALRAQAEAAQARYEAAAARLSAARRKIAKDLGKQVTQAMQTLSMQGGRFEAALTGGAPSAHGSEQVEFLVAGHAGSTPRPLAKVASGGELSRISLALSVIASRAARVPTLIFDEVDSGVGGAVAEAVGKLLRELGQRHQVLCVTHLPQVAACAHAQYRVSKVESGGSTRSRIAELDAEARVEEVARMLGGIRITATTRDHAREMLGGHTAPAA
>NC_018829.1|WP_003814098.1|3960516_3960936_-|ferric-iron-uptake-transcriptional-regulator
MSDQSELKNMGLKATFPRLKILDIFRKSDLRHLSAEDVYRALIAENVEIGLATVYRVLTQFEQAGILTRSQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQYKVAKDNGFVLESHAMVLYGICGNCQKGR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_8

4318553-4318646

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_8

>merge|NC_018829|8|4318553-4318646|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGACCCAGGAACCCCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>NC_018829|8|8|4318553-4318646|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGACCCAGGAACCCCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_003820699.1\|4321310_4322225_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_018829.1\|WP_080605970.1\|4309291_4310452_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NC_018829.1\|WP_003820707.1\|4310589_4311567_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NC_018829.1\|WP_003820700.1\|4319277_4319622_-\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
NC_018829.1\|WP_003820704.1\|4313393_4314626_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NC_018829.1\|WP_003814701.1\|4318718_4319189_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_018829.1\|WP_015041881.1\|4306976_4308170_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180775
NC_018829.1\|WP_003814711.1\|4323899_4324355_-\|multidrug/biocide-efflux-PACE-transporter	unknown	unknown	gnl\|CDD\|226610
NC_018829.1\|WP_015041882.1\|4308236_4309265_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|366103
NC_018829.1\|WP_015041886.1\|4325642_4327262_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_018829.1\|WP_003814699.1\|4316203_4318327_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NC_018829.1\|WP_157734656.1\|4325413_4325683_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NC_018829.1\|WP_003814694.1\|4314822_4315578_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NC_018829.1\|WP_003814704.1\|4319721_4321122_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_018829.1\|WP_003820705.1\|4312615_4313401_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181723
NC_018829.1\|WP_003820703.1\|4315688_4316207_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NC_018829.1\|WP_003814709.1\|4322970_4323894_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NC_018829.1\|WP_015041884.1\|4311577_4312549_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NC_018829.1\|WP_003820698.1\|4322221_4322881_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_018829.1\|WP_015041885.1\|4324351_4325455_-\|ChbG/HpnK-family-deacetylase	unknown	unknown	gnl\|CDD\|212118

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_003820699.1\|4321310_4322225_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.28877e-09
NC_018829.1\|WP_080605970.1\|4309291_4310452_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.25043e-83
NC_018829.1\|WP_003820707.1\|4310589_4311567_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.29992e-59
NC_018829.1\|WP_003820700.1\|4319277_4319622_-\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NC_018829.1\|WP_003820704.1\|4313393_4314626_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	1.64046e-118
NC_018829.1\|WP_003814701.1\|4318718_4319189_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
NC_018829.1\|WP_015041881.1\|4306976_4308170_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	1.08704e-173
NC_018829.1\|WP_003814711.1\|4323899_4324355_-\|multidrug/biocide-efflux-PACE-transporter	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.35069e-54
NC_018829.1\|WP_015041882.1\|4308236_4309265_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|366103	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain. C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	7.97783e-13
NC_018829.1\|WP_015041886.1\|4325642_4327262_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.93579e-51
NC_018829.1\|WP_003814699.1\|4316203_4318327_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NC_018829.1\|WP_157734656.1\|4325413_4325683_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.82605e-06
NC_018829.1\|WP_003814694.1\|4314822_4315578_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NC_018829.1\|WP_003814704.1\|4319721_4321122_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.52472e-110
NC_018829.1\|WP_003820705.1\|4312615_4313401_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	7.88581e-157
NC_018829.1\|WP_003820703.1\|4315688_4316207_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.24362e-44
NC_018829.1\|WP_003814709.1\|4322970_4323894_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.97616e-21
NC_018829.1\|WP_015041884.1\|4311577_4312549_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	5.05728e-117
NC_018829.1\|WP_003820698.1\|4322221_4322881_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	3.59851e-32
NC_018829.1\|WP_015041885.1\|4324351_4325455_-\|ChbG/HpnK-family-deacetylase	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	3.026e-93

>NC_018829.1|WP_003814699.1|4316203_4318327_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>NC_018829.1|WP_003820703.1|4315688_4316207_+|MgtC/SapB-family-protein
MDTVWTEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>NC_018829.1|WP_003814694.1|4314822_4315578_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NC_018829.1|WP_003820704.1|4313393_4314626_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKKPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGTVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRDGAAIAAARQRPEGTDHD
>NC_018829.1|WP_003820705.1|4312615_4313401_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAYLSRKRG
>NC_018829.1|WP_015041884.1|4311577_4312549_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHPRTLALAVLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGANSFIAAQTVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDALKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSEEGKAFMDQLGGEPFVGGPATLAAFQRDELASMRRIAKLANIQQE
>NC_018829.1|WP_003820707.1|4310589_4311567_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSVYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALVMYAFQQYGVVPHITQEAIQVQTILSLVESGLGLAIVPKVAGRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NC_018829.1|WP_080605970.1|4309291_4310452_-|acyl-CoA-dehydrogenase-family-protein
MGTIIEALQLAAIPARDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDMAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALRASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NC_018829.1|WP_015041882.1|4308236_4309265_-|acyl-CoA-dehydrogenase
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARTWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGADWRCAPIAGVALAQAVAVEHDGCLALWPAPDVVQPGLFRPRASGAPAWRGMPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAIQQDISMLAEQVAAVAMAARLACASGALFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAAQA
>NC_018829.1|WP_015041881.1|4306976_4308170_-|acetyl-CoA-C-acyltransferase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPMAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAAQARIVGHATAALPPGQFPAAPVRAIARLFERVGWNRDSVDLFEINEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAIERA
>NC_018829.1|WP_003814701.1|4318718_4319189_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NC_018829.1|WP_003820700.1|4319277_4319622_-|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NC_018829.1|WP_003814704.1|4319721_4321122_-|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NC_018829.1|WP_003820699.1|4321310_4322225_+|DMT-family-transporter
MSPPSAQASAPSASSHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>NC_018829.1|WP_003820698.1|4322221_4322881_+|LysE-family-translocator
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRTFNVGMAVLLVVSLYPVGLDLLALYTG
>NC_018829.1|WP_003814709.1|4322970_4323894_+|alpha/beta-fold-hydrolase
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>NC_018829.1|WP_003814711.1|4323899_4324355_-|multidrug/biocide-efflux-PACE-transporter
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>NC_018829.1|WP_015041885.1|4324351_4325455_-|ChbG/HpnK-family-deacetylase
MTSERYDEGQQPAHDVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAQAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYDFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>NC_018829.1|WP_157734656.1|4325413_4325683_+|GtrA-family-protein
MGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP
>NC_018829.1|WP_015041886.1|4325642_4327262_-|glycosyltransferase-family-39-protein
MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLCVLAGADTALRARAGQAWRAMALATGVCAALAMLAKGLIGLVLPGAVLLAWLAWRRDWRGLRVLLWPPAILAFAVVAVPWFWLMQVRYPGFFEYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDAAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRELALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCGGTPTGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_018829_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018829_9

4592699-4592783

Orphan

Consensus_repeat	Method
GGGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018829_9

>merge|NC_018829|9|4592699-4592783|CRISPRCasFinder
GGGTGCCTGTCCCCGCGGGGACAGATGCCCTCTTGGCCGTCAAGCGTTCTGGCGTATGACGGGGTGCCTGTCCCCACGGGGACAG

>NC_018829|9|9|4592699-4592783|CRISPRCasFinder
GGGTGCCTGTCCCCGCGGGGACAG	ATGCCCTCTTGGCCGTCAAGCGTTCTGGCGTATGACG
GGGTGCCTGTCCCCACGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018829.1\|WP_003815192.1\|4592795_4593584_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NC_018829.1\|WP_010927138.1\|4595543_4596119_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NC_018829.1\|WP_003815198.1\|4598916_4600053_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NC_018829.1\|WP_003815203.1\|4602565_4603450_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NC_018829.1\|WP_003815196.1\|4596331_4597825_+\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NC_018829.1\|WP_033446211.1\|4590859_4591453_+\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|237567
NC_018829.1\|WP_003815183.1\|4586927_4587800_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_018829.1\|WP_015041944.1\|4591449_4592193_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|182907
NC_018829.1\|WP_004567838.1\|4586003_4586756_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NC_018829.1\|WP_015041942.1\|4587796_4588747_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NC_018829.1\|WP_003817719.1\|4597835_4598891_+\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NC_018829.1\|WP_003815194.1\|4594747_4595494_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|319791
NC_018829.1\|WP_003815191.1\|4592189_4592681_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_018829.1\|WP_003815201.1\|4600049_4602002_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_018829.1\|WP_003815202.1\|4602015_4602579_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NC_018829.1\|WP_003815193.1\|4593845_4594748_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_018829.1\|WP_010929781.1\|4588743_4589316_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_018829.1\|WP_015041943.1\|4590317_4590851_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|173148
NC_018829.1\|WP_015041941.1\|4584706_4585993_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NC_018829.1\|WP_003815186.1\|4589312_4590251_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390

Protein	Function_ID	Function_description	E-value
NC_018829.1\|WP_003815192.1\|4592795_4593584_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.17353e-136
NC_018829.1\|WP_010927138.1\|4595543_4596119_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.59741e-107
NC_018829.1\|WP_003815198.1\|4598916_4600053_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.23854e-160
NC_018829.1\|WP_003815203.1\|4602565_4603450_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	9.0892e-90
NC_018829.1\|WP_003815196.1\|4596331_4597825_+\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.68833e-115
NC_018829.1\|WP_033446211.1\|4590859_4591453_+\|phosphoheptose-isomerase	gnl\|CDD\|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	6.68272e-126
NC_018829.1\|WP_003815183.1\|4586927_4587800_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.18739e-149
NC_018829.1\|WP_015041944.1\|4591449_4592193_+\|BON-domain-containing-protein	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.19238e-42
NC_018829.1\|WP_004567838.1\|4586003_4586756_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.67273e-12
NC_018829.1\|WP_015041942.1\|4587796_4588747_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	4.71697e-55
NC_018829.1\|WP_003817719.1\|4597835_4598891_+\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	9.5787e-126
NC_018829.1\|WP_003815194.1\|4594747_4595494_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.14842e-46
NC_018829.1\|WP_003815191.1\|4592189_4592681_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.58284e-41
NC_018829.1\|WP_003815201.1\|4600049_4602002_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_018829.1\|WP_003815202.1\|4602015_4602579_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.62373e-19
NC_018829.1\|WP_003815193.1\|4593845_4594748_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.71108e-158
NC_018829.1\|WP_010929781.1\|4588743_4589316_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	9.34456e-53
NC_018829.1\|WP_015041943.1\|4590317_4590851_+\|YraN-family-protein	gnl\|CDD\|173148	PRK14685, PRK14685, hypothetical protein; Provisional.	3.43572e-88
NC_018829.1\|WP_015041941.1\|4584706_4585993_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.82878e-10
NC_018829.1\|WP_003815186.1\|4589312_4590251_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	9.54075e-109

>NC_018829.1|WP_003815191.1|4592189_4592681_+|TlpA-family-protein-disulfide-reductase
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG
>NC_018829.1|WP_015041944.1|4591449_4592193_+|BON-domain-containing-protein
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVVYLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGDGSSDGTAAQKAPIESGAAPAGSGSNGVEAIPIK
>NC_018829.1|WP_033446211.1|4590859_4591453_+|phosphoheptose-isomerase
MDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>NC_018829.1|WP_015041943.1|4590317_4590851_+|YraN-family-protein
MTDTATRLAFARAAQAQRRLHRRPPASPRASPGARGGGSPTQRRGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLLPVLLRRHWPGAPPPVRFDVVAFEAGRPHWLRGAFWLAEHAPAQGRRGQDAQGWRVR
>NC_018829.1|WP_003815186.1|4589312_4590251_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQDVLSPAPGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAGFPPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQP
>NC_018829.1|WP_010929781.1|4588743_4589316_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNPPSAQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPAAAGWTLDAAHPALRQAAAELEQWFAGRRRAFEVAMQPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAHEGHRYLSRAARARRVSTTQMELPLGAA
>NC_018829.1|WP_015041942.1|4587796_4588747_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLGIIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQLASNAPTPPRPAAGTGSGIYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>NC_018829.1|WP_003815183.1|4586927_4587800_+|RNase-adapter-RapZ
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>NC_018829.1|WP_004567838.1|4586003_4586756_-|c-type-cytochrome
MLAFKSDLRIAMRAWRAACGVLAAAAGMLAMSQAVAQGEAALRPDTMAARVAACTACHGEQGRAGPDGYYPRLAGKPQDYLYHQLLNFRDARRQYPPMAHLLNGLPDAYLREMAAYFAGQDVPYPPPARIEASAALVERGRLLVREGDPARAIPSCASCHGASLAGVAPAIPGLLGLPRDYLVAQIGSWQNGLRRAAEPDCMAQVSLKLTPEDIGAVSAWLAGQPVGHPYTPQPAGSLTLPLECGSQAGH
>NC_018829.1|WP_015041941.1|4584706_4585993_-|cytochrome-c
MKIIKRVLVVVILALLAAVATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSADDFWQALHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRSVEPVRQASRPHELASPYDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIALHSTVAGPMAEVVLGSTQYLSGEDALAIGTYLKSLPAAAPPPARRGAPSATVMELGGKLYSQNCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVSYVRNSWGNQAGAVTPLDVKRTRESGAGR
>NC_018829.1|WP_003815192.1|4592795_4593584_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKPALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDIAENPKKLKFRELEAAMLPRSLDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF
>NC_018829.1|WP_003815193.1|4593845_4594748_+|acetylglutamate-kinase
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGFVGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>NC_018829.1|WP_003815194.1|4594747_4595494_+|pyrimidine-5'-nucleotidase
MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMRMHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLLLRRRPLRG
>NC_018829.1|WP_010927138.1|4595543_4596119_+|nucleoid-occlusion-factor-SlmA
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVAMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>NC_018829.1|WP_003815196.1|4596331_4597825_+|DASS-family-sodium-coupled-anion-symporter
MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLIFVVLRLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLMLVSIMLLLFWSTEGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQTRIPWGTVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIHLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM
>NC_018829.1|WP_003817719.1|4597835_4598891_+|Ldh-family-oxidoreductase
MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRAKLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLCFAGPLPGGRPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADPPGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQDLGAADALPRA
>NC_018829.1|WP_003815198.1|4598916_4600053_-|rod-shape-determining-protein-RodA
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>NC_018829.1|WP_003815201.1|4600049_4602002_-|penicillin-binding-protein-2
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGATDGPMQERRQ
>NC_018829.1|WP_003815202.1|4602015_4602579_-|rod-shape-determining-protein-MreD
MERTKVSVPARRKLGTPSNVEPERLARPAHGVFVWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV
>NC_018829.1|WP_003815203.1|4602565_4603450_-|rod-shape-determining-protein-MreC
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANTPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGAD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_018829_6	6.1\|2763916\|53\|NC_018829\|CRISPRCasFinder	2763916-2763968	53	NC_018829.1	2764034-2764086	2	0.962

1. spacer 6.1|2763916|53|NC_018829|CRISPRCasFinder matches to position: 2764034-2764086, mismatch: 2, identity: 0.962

ctgacttcctgcggtgcctgtccccgcagggacaggcacccggcgacacctgt	CRISPR spacer
ctgacttcctgcggtgcctgtccccccagggacaggcacccggcggcacctgt	Protospacer
************************* *******************.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2298191 : 2306455

Moraxella_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015041407.1\|2298191_2298779_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.6e-16	35.8
WP_003811007.1\|2298796_2299180_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	8.1e-09	25.8
WP_003816534.1\|2299315_2300341_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_003811011.1\|2300546_2301839_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-66	36.0
WP_003811013.1\|2301973_2303014_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.3e-92	51.6
WP_003811015.1\|2303257_2303905_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003816529.1\|2304030_2304789_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.1e-69	51.2
WP_033451094.1\|2304773_2305553_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
WP_003811022.1\|2305570_2306455_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection