CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	3 crisprs	csa3,RT	3	0
NC_019846	Sinorhizobium meliloti GR4 plasmid pRmeGR4a, complete sequence	0 crisprs	NA	0	0
NC_019847	Sinorhizobium meliloti GR4 plasmid pRmeGR4b, complete sequence	0 crisprs	RT	0	3
NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	0 crisprs	csa3,RT,DEDDh	0	1
NC_019845	Sinorhizobium meliloti GR4, complete genome	3 crisprs	WYL,cas3,csa3,RT	1	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019849_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019849_1

651235-651352

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019849_1

>merge|NC_019849|1|651235-651352|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGACACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGCTGCTTCCGGCGCCGCCGACGCCGCCGCC

>NC_019849|1|1|651235-651352|CRISPRCasFinder
GATCGACCTCGCCGCCGCTGCCGCCGA	CACCGCCGCTGCCGCCGACGACGAGATCGATCGTGTGGCTGTGCTCTTTTTCGGCGGCCGTGC
TGCTTCCGGCGCCGCCGACGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019849.2\|WP_010975843.1\|633226_634117_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_019849.2\|WP_014527144.1\|667044_668502_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_019849.2\|WP_080991361.1\|655475_655868_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_014527139.1\|657097_657880_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_019849.2\|WP_015243022.1\|658492_661831_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NC_019849.2\|WP_015243017.1\|635910_638136_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_019849.2\|WP_010975834.1\|647735_648653_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_019849.2\|WP_013844811.1\|643985_645320_-\|ISNCY-like-element-ISRm17-family-transposase	unknown	unknown	gnl\|CDD\|225581
NC_019849.2\|WP_080591096.1\|640495_641038_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_080991311.1\|645464_646391_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_010975829.1\|657968_658367_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_015243023.1\|664063_665227_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_019849.2\|WP_080991312.1\|646415_647657_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_019849.2\|WP_014527141.1\|662015_664058_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_019849.2\|WP_010975822.1\|668498_669773_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_019849.2\|WP_015243018.1\|638216_639998_-\|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family	unknown	unknown	gnl\|CDD\|179625
NC_019849.2\|WP_014527143.1\|665316_666339_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_019849.2\|WP_010975842.1\|634316_634940_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_019849.2\|WP_010975841.1\|634936_635914_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_019849.2\|WP_014527138.1\|655958_657110_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814

Protein	Function_ID	Function_description	E-value
NC_019849.2\|WP_010975843.1\|633226_634117_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_019849.2\|WP_014527144.1\|667044_668502_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_019849.2\|WP_014527139.1\|657097_657880_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NC_019849.2\|WP_015243022.1\|658492_661831_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NC_019849.2\|WP_015243017.1\|635910_638136_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_019849.2\|WP_010975834.1\|647735_648653_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NC_019849.2\|WP_013844811.1\|643985_645320_-\|ISNCY-like-element-ISRm17-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.54829e-41
NC_019849.2\|WP_015243023.1\|664063_665227_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_080991312.1\|646415_647657_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.77543e-66
NC_019849.2\|WP_014527141.1\|662015_664058_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_010975822.1\|668498_669773_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_019849.2\|WP_015243018.1\|638216_639998_-\|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	2.33399e-170
NC_019849.2\|WP_014527143.1\|665316_666339_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_010975842.1\|634316_634940_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_019849.2\|WP_010975841.1\|634936_635914_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_019849.2\|WP_014527138.1\|655958_657110_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171

>NC_019849.2|WP_010975834.1|647735_648653_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_019849.2|WP_080991312.1|646415_647657_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPVPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_019849.2|WP_080991311.1|645464_646391_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPGRPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NC_019849.2|WP_013844811.1|643985_645320_-|ISNCY-like-element-ISRm17-family-transposase
MRQERTVQGSIFDLFAEHEIGRELEAMSQWLDAHRDLLNLVTSDLRRQGVTETGRQGLPSEAVLRCALLKQYRQLSYEELAFHLEDSASFRAFARLPWGWSPKKSVLHKTISAIRADTWEAVNKMLLASARQERLESGRVVRVDSTVTAALIHEPSDSSLLWDCVRVMVRLLQQADSVGSTIPWHDHCRAAKKRARVIEYTRGRPKRVQHYRALLRIARNTLDYLQQAAAQLPLAAGPAGKLWQAQVRHYQPLITQIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKSGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVVAYNLALFARLRPT
>NC_019849.2|WP_080591096.1|640495_641038_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVFDDHCRVNQMIKCRRKEQNRLDVP
>NC_019849.2|WP_015243018.1|638216_639998_-|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFGASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_019849.2|WP_015243017.1|635910_638136_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALEVTYSARQPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWNGDRLTLWSKSQFVVNEQAEIAAIFGLPPENVQVNCPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAVHHATGRRVHELPIMIESLL
>NC_019849.2|WP_010975841.1|634936_635914_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_019849.2|WP_010975842.1|634316_634940_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_019849.2|WP_010975843.1|633226_634117_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_019849.2|WP_080991361.1|655475_655868_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDGRPGRLWIHMVGLLGRQWCR
>NC_019849.2|WP_014527138.1|655958_657110_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NC_019849.2|WP_014527139.1|657097_657880_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_019849.2|WP_010975829.1|657968_658367_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_019849.2|WP_015243022.1|658492_661831_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_019849.2|WP_014527141.1|662015_664058_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_019849.2|WP_015243023.1|664063_665227_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGIICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRSRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_019849.2|WP_014527143.1|665316_666339_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_019849.2|WP_014527144.1|667044_668502_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_019849.2|WP_010975822.1|668498_669773_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL

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Crispr_ID: NC_019849_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019849_2

651442-651541

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019849_2

>merge|NC_019849|2|651442-651541|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGAAGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGTCGCCGCCCTGCCCGCCACCGCCGCCGAT

>NC_019849|2|2|651442-651541|CRISPRCasFinder
TGCCGCCCGCACCGCCGCTGCCGCCGA	AGCCGCCCCCGACGGTGATCCTGCCCGCCGCCTCGTCGGAACCGT
CGCCGCCCTGCCCGCCACCGCCGCCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019849.2\|WP_010975843.1\|633226_634117_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_019849.2\|WP_014527144.1\|667044_668502_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_019849.2\|WP_080991361.1\|655475_655868_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_014527139.1\|657097_657880_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_019849.2\|WP_015243022.1\|658492_661831_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NC_019849.2\|WP_015243017.1\|635910_638136_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_019849.2\|WP_010975834.1\|647735_648653_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_019849.2\|WP_013844811.1\|643985_645320_-\|ISNCY-like-element-ISRm17-family-transposase	unknown	unknown	gnl\|CDD\|225581
NC_019849.2\|WP_080591096.1\|640495_641038_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_080991311.1\|645464_646391_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_010975829.1\|657968_658367_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_015243023.1\|664063_665227_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_019849.2\|WP_080991312.1\|646415_647657_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_019849.2\|WP_014527141.1\|662015_664058_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_019849.2\|WP_010975822.1\|668498_669773_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_019849.2\|WP_015243018.1\|638216_639998_-\|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family	unknown	unknown	gnl\|CDD\|179625
NC_019849.2\|WP_014527143.1\|665316_666339_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_019849.2\|WP_010975842.1\|634316_634940_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_019849.2\|WP_010975841.1\|634936_635914_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_019849.2\|WP_014527138.1\|655958_657110_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814

Protein	Function_ID	Function_description	E-value
NC_019849.2\|WP_010975843.1\|633226_634117_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_019849.2\|WP_014527144.1\|667044_668502_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_019849.2\|WP_014527139.1\|657097_657880_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NC_019849.2\|WP_015243022.1\|658492_661831_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NC_019849.2\|WP_015243017.1\|635910_638136_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_019849.2\|WP_010975834.1\|647735_648653_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NC_019849.2\|WP_013844811.1\|643985_645320_-\|ISNCY-like-element-ISRm17-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.54829e-41
NC_019849.2\|WP_015243023.1\|664063_665227_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_080991312.1\|646415_647657_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.77543e-66
NC_019849.2\|WP_014527141.1\|662015_664058_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_010975822.1\|668498_669773_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_019849.2\|WP_015243018.1\|638216_639998_-\|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	2.33399e-170
NC_019849.2\|WP_014527143.1\|665316_666339_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_010975842.1\|634316_634940_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_019849.2\|WP_010975841.1\|634936_635914_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_019849.2\|WP_014527138.1\|655958_657110_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171

>NC_019849.2|WP_010975834.1|647735_648653_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_019849.2|WP_080991312.1|646415_647657_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPVPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_019849.2|WP_080991311.1|645464_646391_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPGRPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NC_019849.2|WP_013844811.1|643985_645320_-|ISNCY-like-element-ISRm17-family-transposase
MRQERTVQGSIFDLFAEHEIGRELEAMSQWLDAHRDLLNLVTSDLRRQGVTETGRQGLPSEAVLRCALLKQYRQLSYEELAFHLEDSASFRAFARLPWGWSPKKSVLHKTISAIRADTWEAVNKMLLASARQERLESGRVVRVDSTVTAALIHEPSDSSLLWDCVRVMVRLLQQADSVGSTIPWHDHCRAAKKRARVIEYTRGRPKRVQHYRALLRIARNTLDYLQQAAAQLPLAAGPAGKLWQAQVRHYQPLITQIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKSGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVVAYNLALFARLRPT
>NC_019849.2|WP_080591096.1|640495_641038_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVFDDHCRVNQMIKCRRKEQNRLDVP
>NC_019849.2|WP_015243018.1|638216_639998_-|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFGASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_019849.2|WP_015243017.1|635910_638136_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALEVTYSARQPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWNGDRLTLWSKSQFVVNEQAEIAAIFGLPPENVQVNCPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAVHHATGRRVHELPIMIESLL
>NC_019849.2|WP_010975841.1|634936_635914_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_019849.2|WP_010975842.1|634316_634940_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_019849.2|WP_010975843.1|633226_634117_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_019849.2|WP_080991361.1|655475_655868_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDGRPGRLWIHMVGLLGRQWCR
>NC_019849.2|WP_014527138.1|655958_657110_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NC_019849.2|WP_014527139.1|657097_657880_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_019849.2|WP_010975829.1|657968_658367_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_019849.2|WP_015243022.1|658492_661831_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_019849.2|WP_014527141.1|662015_664058_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_019849.2|WP_015243023.1|664063_665227_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGIICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRSRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_019849.2|WP_014527143.1|665316_666339_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_019849.2|WP_014527144.1|667044_668502_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_019849.2|WP_010975822.1|668498_669773_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL

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Crispr_ID: NC_019849_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019849_3

651616-651735

Orphan

Consensus_repeat	Method
TGCCGCCCGCACCGCCGCTGCCGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019849_3

>merge|NC_019849|3|651616-651735|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCGCACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGGTGCCGCCCGCACCGCCGCCGCCGCCGA

>NC_019849|3|3|651616-651735|CRISPRCasFinder
TGCCGACCGCGCCGCCATTGCCGCCCG	CACCGCCGCTGCCGCCGACACCGACGGTGATGTTGGCCGTCGCCTGGCTGCCGGACGCGGTGGAGG
TGCCGCCCGCACCGCCGCCGCCGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019849.2\|WP_010975843.1\|633226_634117_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_019849.2\|WP_014527144.1\|667044_668502_-\|phosphonoacetaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|132294
NC_019849.2\|WP_080991361.1\|655475_655868_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_014527139.1\|657097_657880_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_019849.2\|WP_015243022.1\|658492_661831_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|225483
NC_019849.2\|WP_015243017.1\|635910_638136_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NC_019849.2\|WP_010975834.1\|647735_648653_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NC_019849.2\|WP_013844811.1\|643985_645320_-\|ISNCY-like-element-ISRm17-family-transposase	unknown	unknown	gnl\|CDD\|225581
NC_019849.2\|WP_080591096.1\|640495_641038_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_080991311.1\|645464_646391_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_010975829.1\|657968_658367_-\|hypothetical-protein	unknown	unknown	unknown
NC_019849.2\|WP_015243023.1\|664063_665227_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274496
NC_019849.2\|WP_080991312.1\|646415_647657_-\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NC_019849.2\|WP_014527141.1\|662015_664058_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274495
NC_019849.2\|WP_010975822.1\|668498_669773_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|131388
NC_019849.2\|WP_015243018.1\|638216_639998_-\|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family	unknown	unknown	gnl\|CDD\|179625
NC_019849.2\|WP_014527143.1\|665316_666339_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NC_019849.2\|WP_010975842.1\|634316_634940_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NC_019849.2\|WP_010975841.1\|634936_635914_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NC_019849.2\|WP_014527138.1\|655958_657110_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814

Protein	Function_ID	Function_description	E-value
NC_019849.2\|WP_010975843.1\|633226_634117_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.94942e-30
NC_019849.2\|WP_014527144.1\|667044_668502_-\|phosphonoacetaldehyde-dehydrogenase	gnl\|CDD\|132294	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase. This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.	0
NC_019849.2\|WP_014527139.1\|657097_657880_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.45864e-66
NC_019849.2\|WP_015243022.1\|658492_661831_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|225483	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.62449e-24
NC_019849.2\|WP_015243017.1\|635910_638136_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NC_019849.2\|WP_010975834.1\|647735_648653_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.53138e-90
NC_019849.2\|WP_013844811.1\|643985_645320_-\|ISNCY-like-element-ISRm17-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	7.54829e-41
NC_019849.2\|WP_015243023.1\|664063_665227_-\|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274496	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_080991312.1\|646415_647657_-\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	4.77543e-66
NC_019849.2\|WP_014527141.1\|662015_664058_-\|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|274495	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_010975822.1\|668498_669773_-\|phosphonoacetate-hydrolase	gnl\|CDD\|131388	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.	1.66756e-171
NC_019849.2\|WP_015243018.1\|638216_639998_-\|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	2.33399e-170
NC_019849.2\|WP_014527143.1\|665316_666339_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_019849.2\|WP_010975842.1\|634316_634940_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.51434e-78
NC_019849.2\|WP_010975841.1\|634936_635914_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.14193e-90
NC_019849.2\|WP_014527138.1\|655958_657110_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.76279e-171

>NC_019849.2|WP_010975834.1|647735_648653_-|sulfurtransferase
MKMRIASLAFTLSVLASSALAADISPLVDAEWVKANAGDKDVVILDIRDKVAETELGDKPYIQGAVVAPYASAGWRTEVGGVPGMLPPLEQITKLIGDLGIDNDDHVVIVPWGTDSTEFGGATRVYWTFKYLGHEEVSILDGGWRQYDAAGGTRSAEAVKPEPATFHAEPQEKLLATTEEVAAALKAGVKLIDGRPAEQHQGKSKSPVVRANGTIPGSINIEHSKLYSQDHALFARPETVKALTEAAGLAAEEENITFCNTGHWASVTWFALSEVLGNKNTTMYDGSMAEWTADPARPVENKSGT
>NC_019849.2|WP_080991312.1|646415_647657_-|YeeE/YedE-family-protein
MPHRRRDFEMTDISFDRSRYLPSAVVDRGPALVAGGALLIGLLVIAQLIDLRQAALFVVGGLLGVALYHGSFGFTGGWRRMVVERRGRGIRAQMLMIGVAALAMIPLISAGSLGGQPLVGALAPVGVSVLVGAAMFGLGMQLGGGCGSGTLFTVGGGSARMLVTLTFFIVGALIGSAHLPWWLTLASFGTIDLGRQLGTGTAILATLAGLGLVALATALIERRAHGNIEREPVPSRPGWTWLLYGPWPLVGAGLLMALLNVATLLLAGHPWSVTFGFGLWGAKAAQAVGVPVATWEFWNWPGPQAALSASVLADVTSVMNFGIVLGAAAAASLAGKFAPKAKIPLGSMLAAVVGGLLMGYGARLSFGCNIGALFSGIASGSLHGWLWFATAFVGSFVGIWMRPLFGLDGFKKK
>NC_019849.2|WP_080991311.1|645464_646391_-|hypothetical-protein
MQRWRRRPPLWQSITTIIPFRAPSQQRPPVRQEGQHPVPQVPRAPLPRRAPPALRSQHHLHRPRQCPLCLVPPGRPQRQWHPSSRLRRRRLPCRPRGRSFRRLRRPLPCRYREMAEEAVELARREIAYCETLLAKGGLNVLSETFRDTAEIKAWDHYPTGDVFDPTSGAQWFYHCHPAEEGAEEHGHFHCFLRPQGPQGPIHHLAAVGVDAHGRLLRLFTVNQWVVGDDWLGAEGTIALLPRFDVQMPRPSYLVNRWLTAIFTAYEQQITELIRERDRTLLAHRQPESVEARQDRALEVTSEFKLSGR
>NC_019849.2|WP_013844811.1|643985_645320_-|ISNCY-like-element-ISRm17-family-transposase
MRQERTVQGSIFDLFAEHEIGRELEAMSQWLDAHRDLLNLVTSDLRRQGVTETGRQGLPSEAVLRCALLKQYRQLSYEELAFHLEDSASFRAFARLPWGWSPKKSVLHKTISAIRADTWEAVNKMLLASARQERLESGRVVRVDSTVTAALIHEPSDSSLLWDCVRVMVRLLQQADSVGSTIPWHDHCRAAKKRARVIEYTRGRPKRVQHYRALLRIARNTLDYLQQAAAQLPLAAGPAGKLWQAQVRHYQPLITQIIAQTERRVLAGEAVPAGEKLVSLFEPHADIIVKGSRDVDYGHKLNLTTGRSGLILDLVIEAGNPADSERLLPLLERHIAFYGEAPRQAAADGGYASRENLRQAKAWGVRDMAFHKKSGLRIEDMVRSRWVYRKLRNFRAGIEAGISCLKRTYGLARCTWRGLDHFKTYVWSSVVAYNLALFARLRPT
>NC_019849.2|WP_080591096.1|640495_641038_-|hypothetical-protein
MVHPAKICLGTHDRVVQILLRSEHLVVIEIAPVEQIKGDAFEAAIPSFRRSARPSVRVVCQQSAPKRVAVVVESDYAVGHENMVTGEAFAGDDALGIKSGKGCLAQKHTGENGTRAISEEDAVRQSPAPHRVLFYAGLQRVQGRCTIQTESATISVFDDHCRVNQMIKCRRKEQNRLDVP
>NC_019849.2|WP_015243018.1|638216_639998_-|transporter-monovalent-cation:proton-antiporter-2-(CPA2)-family
MAAESHGIDLLPVIALLGAAVVAAPLFKRIGLGSVLGYLAAGIAIGPFGLRLLQEPSSILHVAELGVVMFLFIIGLEMRPSRLWGLRREIFGLGIVQVALCALLLTGVGVLTGFPVAPSFVAGAGFVLTSTAIVMQLLEERREMAAPKGQRIVSILLVEDMAIVPLLALVAFLAPIVPGSVAASGAIDWLSIAIGLVTIAGLVLAGRYLLNPLFGLIAGVEAREVMTAAALMVVLGSAYVMQLGGLSMAMGAFLAGVLLSESTFRHQLEADVEPFRGILLGLFFLAVGMSLDLGVIARNWAMILFYVAAYMVVKAIVIYLVARLFGASNWEAIERAVFMAQGGEFAFVLYAAALGTGIISSEENAILTAIIIVSMMVTPLLIAALRLVERNIPLSTDGVERPENLSGNVLIIGFGRVGQIVSQVLLTRGHVISIIDTDVEMINTAREFDFKVYYGDGKRLDILHAAGAERASAIVVCVDKADDATKIVELIKAEFPLIPVLARASDRRHALDLITAGADFHIRETFESSLVLGQKALEALGADLPEVAEIIEKVRQRDEKRLELELVGGLYAGRPLFSGKLEPVEAVPPGGSA
>NC_019849.2|WP_015243017.1|635910_638136_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTAIGKSLSRIDGRLKVTGQATYAAEFNQEGQAHAVIVGSTVGLGRIESIDSAAVEKMPGVVAVISHLNAQRLAYNEHRGPIDPPAGERLHVLQGSEVRFFGEPVAIVVAETLDQAEHAANALEVTYSARQPQVDAHAGEQVVPAVARRPGARAEADVARGDADKALETAAVKVEAEYVIARENHNPMEPHATIAAWNGDRLTLWSKSQFVVNEQAEIAAIFGLPPENVQVNCPFIGGAFGTSLRTWPHVTLAALAARHVNRPVKLVLTRKQMFFATGHRPYTLQRIALGAQPDGKLIGIVHEGAGETSRYEEFMEALTSVTSFMYSCPNVRTSYRLIPLDASTPTYMRGPGEASGIHALECAVDELAYKLQMDPIDLRRINEPQIDEGRQVPFSSRSMLKCYDLGAERFGWSRRTPEPGSMRDGRLLIGYGMANASYPCLFAPASARVRLLPDGTVEVEAAASDMGPGTYTSMSQVAAEYLGIPVERIRFSLGRSDFPATPPHGGSMTMASVGSAIRAACLDLQAKAAVLAAKGGGNAGLAGQSPEALEWRDGMLFVKGRSDRGVTYADLVSYGGESPLVGEGTAARDAETGQKYSMHSFGAVFAEVAIDPDVKTIKVRRALGAYGVGRVVNPKLATSQCIGGMIGGIGMAIMERTLLDRRNGRPINAHMADYLVPVNLDTPHIEAHFIDEEDTIVNPLGVKGLGEIALVGMSAAVSNAVHHATGRRVHELPIMIESLL
>NC_019849.2|WP_010975841.1|634936_635914_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFEFQRAASESEAIAAGAAGARYLAGGTTLVDLMREEVETPEKIVDINRLPLNYIRATDEAIVIGALARMSEVAANQDVRRLQPLIPETLTEGASPQLRNVASIGGNLLQRVRCPYFRMLDAPCNKRVPGSGCSAIDGLNAGHAILGTSEHCVATHPSDLAVSLVALGAMLSLKGPRGERTIPVEELFRLPESTPHLEHTLEPGELIVEVHIPNGPYARKARYLKVRDRSSYEFALVSAAAALHVENGIIKEVRIAAGGVGTRPWRMNAVEQALVGKPAARASYEIAAAVSTEETRPLSHNGFKVKLLPATIVRALEMAGDVA
>NC_019849.2|WP_010975842.1|634316_634940_+|(2Fe-2S)-binding-protein
MTDETAELHPPGLTMSRREALQATAGAVAFAALPLPAEAAADSTATPAPPTHTLPLEVTVNGRVHQLVVDPRLSVLDMLRERLSLTGTKKGCNQGACGACTVLIDGQRVNACLALAVMYDGAKITTIEGVAEGEALHPLQVAFIEHDAFQCGYCTSGQIMSGLGCISEGHASSAEEISYWMSGNICRCGAYPGIVAAVAQAAKEDRT
>NC_019849.2|WP_010975843.1|633226_634117_+|helix-turn-helix-transcriptional-regulator
MGGKALADTTAHIRRLQRGLSPPLVAEVFSDDTRLVGRWWNKPFEYELPPLKDHVLSAKYSGQGMASVKIGGQTISAPAAMGTITLAPRGHGGFWRADGHVEVSNIFLGHKRLLASADQVGNGREPELLDRVNFSDPKLFTIMALINDEINSGDAISHLYIDQLLDLVCLQLLRAHSASSMPISPGPQRGLSGWQVKRVTGYMRENMAEDIRIQELADLVNLSRFHFCTAFRMATGQTPYGWLTRQRIAYAKTLLRDMKLRVNDIALAVGYETQSAFAASFRKAVGITPTEFRRRL
>NC_019849.2|WP_080991361.1|655475_655868_-|hypothetical-protein
MRGGRIINTYKESHIQRVAHSHVEHGGARFAAVCRCMSAIFRGDTSDEARHQNQESPAEVFAGSIRTRRPSCVSVRAEHVAFFDRAGRRARRGGPGRRGVCGLQWKCNPDGRPGRLWIHMVGLLGRQWCR
>NC_019849.2|WP_014527138.1|655958_657110_+|sensor-histidine-kinase
MVVIAEPDLLPDLSGSHIADPSYRRSRTKRKFNGSGTVLVGALGSFWRAQTAGWLFGALFAVVSRILAFEDVAFAFALTAVLEPLGFALTTLAYRIFRHRIGGVTLTVVAVALALSIAGGVLQMLIANAMKDVLQPNIDPDYGANGSVIPAIYYTLIFLGWSLAYLWIKADADARKQRMRRHRAREEALRAELHQLRLQLDSHFLFNVLNTVAMEIPEEPDTALEMIHRITAYLRYLLENQTRRICPLSDEIEAMMAYIRIQELRFEGRLDCVVEVDPAARPVAVPHLILQPLVENAVKHGLRSPASRFAVGITVECRDADLFIEISNPGRLEAGERDRPPIGLANIRRRLELHYPLGHALTLIQAGDKVIARLMLRGAACYA
>NC_019849.2|WP_014527139.1|657097_657880_+|response-regulator-transcription-factor
MLRVMVVDDEPPARRGLKRLMQAHPDVEVVGEAGSLDQAHQLTHALRPDAIFLDIDLGDDDGFGLIKRLDQVPAIVFVTGHGTYAPQAFDVAALDFLLKPVERQRLALTLERLRRYRHALELGGKVLDDTATVLPVVMPGRRRLHIRMAGQTLVLPTDGIAMLAAEADFTRIVMADARDHLVCRLLGQFDAELPTPPFFRVSRSLIINLDRVVRVRSQDKGRSLLSLGRSLTPIMLGRVATTRLRRALDGFQRVGTVPDG
>NC_019849.2|WP_010975829.1|657968_658367_-|hypothetical-protein
MKRPTNRRTVLMTAGAAAVAAVAGPVAAQSPDIRGAVTFEGGAVPEGHLEIYLEDPAIQDEARRRATETRIKSDGTSTSIAFSLSPPASVNASPTLRIVARLERADGWLVARGSTRFEAGSPVYVTLNPVMY
>NC_019849.2|WP_015243022.1|658492_661831_-|RTX-toxins-related-Ca2+-binding-protein
MPNPSQTSDNWWINDQTPDNPYGKSEDYESFLDYLGALPRSLTPEMAAGTLRINVYELNDHPEYKAAAIGALQMWASVTPLKFEIVDDTPFDSTTDWMEVVSPELGEEDDGSAYSSNRYVSIGQRFHDTEPNKTDIGGYVFDSFIHEFGHEFGLNHPGLYNYSGPGGVQINYLNNATWTYDRQQYSVMSYFDGIDVGETSRWSASTPLMADIEAVIRRFFSTVDENGVRTYQHIDLNTGDNVYGFGSTQYGYQLTSSGMQHDIGFAIHDTGGVDTIDFSGSTAGTILDLRAGQFSSVNGHSNNVSIFAGHNADAADYYIETGIGSRFDDILIGNDGANTLDGRSGGDRMAGNGGDDTYFVDSLEDIVREEANGGNDTVILLSRNLKIRKIANVENIIYADESTTQPGGGGASPPIAGDNTMTSIIFGGNGNDTLDGGAGDDTIFGKGGDDLIIGGRDSLASRDINNTIDVEDLEDQTESDDGNDTLYGGGGNDTILGGQGNDILDGGAGDDVLSGQDGVDIFRGGAGVDTVDFSKESPFQLLVNLATNVASGGTASGDTFHSIENLIGSDDRIDRFIGTSAANHFWGQGGGDYFNGGGGNDILDGGNDGDILYGEAGNDTVIGGAGQDYLDGGSGIDTVVYAGSPDGVTIDLANGTASGGDGDGPVQIVGRGAVIRHDILVGFENAAGSSFDDHLIGNALANELSGGAGDDTLTGGGGADRLNGGAGSDTADYADATSGVRLSLAGGRSGGDTYVSIENLAGSGFGDRLTGNGAANVLTGQGGNDTIDGGRGDDTLLGDFAYQGDAPPRPGMGSGYATLGPDAANNSIAAAFDISNNFSLTSDPDIFDSTTILHTTVNATGNGRGGYYKIDLAAGTVITIDIDGIADPNVHDSWVRLLDSAGNIVAQNDDGGGDPGSTSNRDSSLVFVAQETGTYYILEGSWSPTAPGDGWAEAVPAGSTYELNVSVEFPPQPAQPGVAGSDTLIGGGGSDLLDGGLAADTLTGGAGEDTFRFSTALGNGNVDWIKDFNVIDDTILLDNLIFESVGGEGALALGAFYGSAGGVAHDADDRIIYDADSGVLSYDADGAGEIAAIQYAQLSTNLKLSAADFIII
>NC_019849.2|WP_014527141.1|662015_664058_-|putative-2-aminoethylphosphonate-ABC-transporter-permease-subunit
MTLAVDFLPPGRAVRQQISGDDWLKRAVMLVVGIYLVVALALPLFVMLSKSFSTYTFDLHQFEFQVSDQSGQGWSDPVTAAALNAAVAAFPESDLKASADGRLQAAKLFPDFSFRSPVRYRIRGTSDETHFLAGSQLVRGTEWQEYDSNNFRRVMLRPSRSIGLSNFAEYFSTPSLVRSIKNSVTMALISTAVTLVVAFGLAYALNRSRMPGKGLFKLIVTIPILVPSLLPGIALVYLFGNQGVFRDLLLGHSIYGPLGIVVGSVFFTLPHAFLIISTALWVADARHYEAATSLRASKWRTFWTVTVPGARYGLISAAFVVFTLVITDFGLPKVIGGQYGMLAVDIYKQVIGQQNFEMGAVVSVILLVPAFLAFAVDRLTQRRQVALLSARAVPYEPKPRRGFDAACFAFCTLVAVFVLGMIGMCQVAALVKFWPYDLSLSLRNYAFDLMDGGGWDSYYNSIRLALMTAVIGSLIVFTGAYMVEKTKGFGLGRATFHMLAMLPMAVPGMVLGLAYIFFFNSAANPLHGIYGTMTILVLCTVTHFYTVAHLTALTALKQLDPEFEAVAGSLKIPFYKLFFRVTLPVCLPAVLEIAIYLFVNAMTTVSAVVFLYATDTKLASVAILNMDDAGDIAPAAAMGMMIFYTNVAAKLLHAFVSRLLLARTQGWRRVSQSAAATVPH
>NC_019849.2|WP_015243023.1|664063_665227_-|putative-2-aminoethylphosphonate-ABC-transporter-ATP-binding-protein
MKHATAPAEPAMPASATRQIEGRPFLEIDGLWKAYGDFVALRDIDLQVKEGEFICFLGPSGCGKTTLLRAIAGLDIQSRGIICQGGQDISRLPPAQRDYGIVFQSYALFPNLTIEKNIAFGLENIGRSRREIASRVSELLELVGLSSQGRKYPAQLSGGQQQRVALARAMAISPGLLLLDEPLSALDAKVRVHLRHEIKELQRKLGVTTIMVTHDQEEALAMADRIVVMNQGGIEQVGTPTEIYRHPKTLFVADFIGETNQFPATVGKGAQVEIGHTRFACAEHRLPSGASVVAAVRPADIIPHGAAAHRATGLDAVGNADNLIDAHVEDMEFLGMFWRTRLSAPRLKEKALVADFSTNAVRRLSIEIGSAIQVEIPQERLLLFAKA
>NC_019849.2|WP_014527143.1|665316_666339_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MPFSKIFLGAGTALILASSAAYAETELTVYTSIEAVDLDRYKETFKKAHPDIKINWVRDSTGVMTAKLLAEKDNPQADVVWGVAATSLLLLKSEGMLEPYSPKNVEALDPRFVDGDKPPSWVGMDAYVAALCYNTVEAGKLGLTPPTSWKDLTKPEYKGHVVMPNPNSSGTGFLDVSAWLQTFGEEEAWSFMDALHENIAAYTHSGSKPCKMAASGETVIGVSFEFPGAKAKTSGAPIDIIFPSEGSGWEAEATAIIAGTANLEAAKTLVDWSISKEANEMYNVGYAVVAYPGVAKPIENLPDDVADKMIKNDFEWAANNRARILKEWQKRYDAKSEPKS
>NC_019849.2|WP_014527144.1|667044_668502_-|phosphonoacetaldehyde-dehydrogenase
MTKAEVIIAVRHEPMRIAGRLVDTDDRVEVRYPWNDTVVGTVPAGRAEHAREAFAIAAAYQPKLTRYERQKILLATAEALAARKEEISDVITLELGISKADSLYEVGRAFDVFTLAGQMCIRDDGEIFSCDLTPHGKARKIFTMREPLTAISAITPFNHPLNMVAHKVAPAIATNNCVVVKPTELTPMTALLLADILYEAGLPPEMLSVVTGWPADIGMEMITNPHVDLVTFTGSVPVGKLIAANAHYKRQVLELGGNDPLIILNDLSDDDLARAADLAVAGATKNSGQRCTAVKRILCQESVADRFVPLVLERAKRLRFGDPMDRSTDLGTVIHEKAAALFEERVMRAAEEGADILYHPGRSGALLPPIVVDRVPHQSDLVLEETFGPIIPIVRVPDDDDATITLSNSTAFGLSSGVCTNDYRRMQKYIAGLKVGTVNIWEVPGYRIEMSPFGGIKDSGNGYKEGVIEAMKSFTNVKTFSLPWP
>NC_019849.2|WP_010975822.1|668498_669773_-|phosphonoacetate-hydrolase
MNQMSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAAEAGAEGGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054100-1054144	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656013-656057	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772894-772938	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292351-292395	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225853-1225897	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998536-998580	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651469-651513	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636463-636507	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233510-233554	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644528-644572	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558514-558558	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658142-658186	0	1.0
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085274-1085318	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151496-1151540	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373266-373310	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085279-1085323	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634337-634381	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302265-1302309	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895761-895805	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423128-1423172	1	0.978
NC_019849_2	2.1\|651469\|45\|NC_019849\|CRISPRCasFinder	651469-651513	45	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795069-795113	1	0.978
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651262-651324	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085463-1085525	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636256-636318	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151685-1151747	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233303-233365	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644321-644383	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634130-634192	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302058-1302120	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895554-895616	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	773083-773145	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558307-558369	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292540-292602	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1422921-1422983	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373455-373517	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	794862-794924	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	657935-657997	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1226042-1226104	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998725-998787	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085468-1085530	3	0.952
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1054289-1054351	4	0.937
NC_019849_1	1.1\|651262\|63\|NC_019849\|CRISPRCasFinder	651262-651324	63	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	656199-656261	4	0.937
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	651643-651708	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1085079-1085144	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1053905-1053970	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	636637-636702	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1151301-1151366	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	233684-233749	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	644702-644767	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	634511-634576	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	655818-655883	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1302439-1302504	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	895935-896000	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	772699-772764	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	558688-558753	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	292156-292221	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1423302-1423367	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	373071-373136	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	795243-795308	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	658316-658381	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1225658-1225723	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	998341-998406	6	0.909
NC_019849_3	3.1\|651643\|66\|NC_019849\|CRISPRCasFinder	651643-651708	66	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1085084-1085149	6	0.909

1. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

2. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

3. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

4. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

5. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

6. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

7. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

8. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

9. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

10. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

11. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

12. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 0, identity: 1.0

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
*********************************************

13. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

14. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

15. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

16. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

17. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

18. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

19. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

20. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

21. spacer 2.1|651469|45|NC_019849|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 1, identity: 0.978

agccgcccccgacggtgatcctgcccgccgcctcgtcggaaccgt	CRISPR spacer
agccgccgccgacggtgatcctgcccgccgcctcgtcggaaccgt	Protospacer
******* *************************************

22. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

23. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

24. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

25. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

26. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

27. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

28. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

29. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

30. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

31. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

32. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

33. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

34. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

35. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

36. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

37. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

38. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

39. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

40. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 3, identity: 0.952

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	Protospacer
************************************************************

41. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

42. spacer 1.1|651262|63|NC_019849|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 4, identity: 0.937

caccgccgctgccgccgacgacgagatcgatcgtgtggctgtgctctttttcggcggccg	CRISPR spacer
caccgccgctgccgccgacgacgagatcgatcgtgtggctgtactctttttcggcggccg	Protospacer
******************************************.*****************

43. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

44. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

45. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

46. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

47. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

48. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

49. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

50. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

51. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

52. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

53. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

54. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

55. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

56. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

57. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

58. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

59. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

60. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

61. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

62. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

63. spacer 3.1|651643|66|NC_019849|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.909

caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	CRISPR spacer
caccgccgctgccgccgacaccgacggtgatgttggccgtcgcctggctgccggacgcgg	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4992 : 56032

Enterobacteria_phage(18.18%)

integrase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015241550.1\|4992_6159_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015241551.1\|6513_8181_+\|transposase	transposase	NA	NA	NA	NA
WP_015241552.1\|8182_8503_-	hypothetical protein	NA	NA	NA	NA
WP_127642725.1\|8954_10610_-	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	4.0e-12	31.2
WP_127642723.1\|15924_17280_+	hypothetical protein	NA	NA	NA	NA
WP_127642724.1\|17983_18721_-	hypothetical protein	NA	NA	NA	NA
WP_015241557.1\|18919_19690_-	hypothetical protein	NA	NA	NA	NA
WP_015241558.1\|19812_21195_+	hypothetical protein	NA	NA	NA	NA
WP_015241559.1\|21445_22648_+	cytochrome P450	NA	NA	NA	NA
WP_015241560.1\|22742_23705_+	cytochrome P450	NA	NA	NA	NA
WP_015061229.1\|24145_26095_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003532611.1\|26122_26515_+	hypothetical protein	NA	NA	NA	NA
WP_014528051.1\|26578_28189_+	tyrosinase family protein	NA	NA	NA	NA
WP_015061230.1\|28317_28647_+	hypothetical protein	NA	NA	NA	NA
WP_015241562.1\|28798_29551_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	9.2e-41	45.2
WP_011970797.1\|30103_31050_-\|transposase	IS630-like element ISRm2011-2 family transposase	S5VXX4	Leptospira_phage	1.0e-12	24.7
WP_014531006.1\|31978_32269_-	mucR family transcriptional regulatory protein	A0A1P8VVG0	Erythrobacter_phage	1.4e-08	53.3
WP_015241565.1\|32931_33699_+	response regulator transcription factor	NA	NA	NA	NA
WP_015241567.1\|34875_35652_+	hypothetical protein	NA	NA	NA	NA
WP_041169689.1\|35803_36544_+	hypothetical protein	NA	NA	NA	NA
WP_014528047.1\|36604_37126_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_003532589.1\|37254_37845_+	NYN domain-containing protein	NA	NA	NA	NA
WP_011970372.1\|38174_38738_-	UPF0149 family protein	NA	NA	NA	NA
WP_013845336.1\|38734_40309_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-75	35.9
WP_013845337.1\|40357_40714_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_013845338.1\|40710_41181_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041169715.1\|42122_43928_+	EAL domain-containing protein	G3MA91	Bacillus_virus	7.0e-18	33.9
WP_015241571.1\|44726_45926_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.8e-94	46.7
WP_080991211.1\|45667_46618_-	diguanylate cyclase	G3MA91	Bacillus_virus	2.1e-26	41.4
WP_088204151.1\|46669_46891_-	hypothetical protein	NA	NA	NA	NA
WP_127642796.1\|47078_47330_-	PAS domain-containing protein	NA	NA	NA	NA
WP_127642798.1\|47266_47458_-	hypothetical protein	NA	NA	NA	NA
WP_015241574.1\|48105_48987_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.0e-51	45.9
WP_041169716.1\|48983_50246_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.0e-48	38.4
WP_013845262.1\|51112_52132_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_003532569.1\|52275_52752_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049589662.1\|52927_53305_-	thiazole synthase	NA	NA	NA	NA
WP_127642797.1\|54929_56032_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.2e-13	30.3

DBSCAN-SWA_2

91950 : 122963

Erythrobacter_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107592309.1\|91950_92424_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_080564460.1\|92483_92768_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_015241607.1\|92764_93082_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_015241608.1\|93380_93830_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	8.0e-16	46.7
WP_015241610.1\|94631_95357_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015241613.1\|96773_97652_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.8e-20	26.9
WP_015241614.1\|97799_99038_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_015241615.1\|99042_100104_+	stachydrine N-demethylase reductase subunit Stc4	NA	NA	NA	NA
WP_015241616.1\|100358_101039_+	flavin reductase family protein	NA	NA	NA	NA
WP_015241619.1\|102464_103070_+	hypothetical protein	NA	NA	NA	NA
WP_015241620.1\|103441_103897_+\|transposase	transposase	NA	NA	NA	NA
WP_013845290.1\|104148_104748_+	hypothetical protein	NA	NA	NA	NA
WP_015241622.1\|104985_105243_-	WGR domain-containing protein	NA	NA	NA	NA
WP_015241623.1\|105695_106733_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_127626125.1\|107100_107598_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041169695.1\|107800_108034_-	hypothetical protein	NA	NA	NA	NA
WP_013845293.1\|108059_108371_+	hypothetical protein	NA	NA	NA	NA
WP_015241625.1\|108384_108669_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	1.8e-13	43.5
WP_015241626.1\|109479_109872_-	hypothetical protein	NA	NA	NA	NA
WP_015241627.1\|109875_110313_-	hypothetical protein	NA	NA	NA	NA
WP_015241628.1\|110305_111019_-	ParA family protein	A0A2H4JGZ2	uncultured_Caudovirales_phage	6.5e-12	28.4
WP_015241630.1\|111869_114308_+	hypothetical protein	NA	NA	NA	NA
WP_015241631.1\|114314_114527_+	hypothetical protein	NA	NA	NA	NA
WP_015241632.1\|114656_115340_-	B3/4 domain-containing protein	NA	NA	NA	NA
WP_015241633.1\|115383_116007_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_015241634.1\|116082_117540_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_003532643.1\|117622_117919_-	hypothetical protein	NA	NA	NA	NA
WP_015061484.1\|117968_118193_-	hypothetical protein	NA	NA	NA	NA
WP_003532639.1\|118321_118531_-	cold-shock protein	A0A218MMZ6	uncultured_virus	1.2e-09	52.8
WP_041169697.1\|118619_118808_-	hypothetical protein	NA	NA	NA	NA
WP_013845331.1\|119317_119890_-	hypothetical protein	NA	NA	NA	NA
WP_080991214.1\|121454_122963_+\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

144228 : 203651

Stx2-converting_phage(26.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_127642748.1\|144228_145417_+\|transposase	IS3-like element ISSme1 family transposase	S5WIU1	Leptospira_phage	1.1e-48	42.0
WP_127642750.1\|145689_146340_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_080991221.1\|148130_148370_+	hypothetical protein	NA	NA	NA	NA
WP_015241663.1\|149121_149547_+	protein nfe1	NA	NA	NA	NA
WP_015241664.1\|149758_150694_+	protein nfe2	NA	NA	NA	NA
WP_015241665.1\|150819_151782_+	ornithine cyclodeaminase family protein	A0A1V0SL93	Klosneuvirus	6.6e-07	23.5
WP_015241666.1\|151968_153171_+\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_080991215.1\|153325_154003_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012477324.1\|155736_157245_+\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_014529334.1\|157241_158054_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-28	35.7
WP_049589664.1\|158280_159114_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014526646.1\|160841_162101_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.5e-30	30.1
WP_080670688.1\|162821_164036_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015241672.1\|164324_164570_+	hypothetical protein	NA	NA	NA	NA
WP_015241673.1\|164614_165097_+	hypothetical protein	NA	NA	NA	NA
WP_015241674.1\|165103_165895_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA
WP_015241675.1\|165896_166517_+	hypothetical protein	NA	NA	NA	NA
WP_015241676.1\|166513_167071_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA
WP_015241677.1\|167063_168380_+	FliI/YscN family ATPase	NA	NA	NA	NA
WP_015241678.1\|168381_169401_+	flagellar motor switch/type III secretory pathway protein	NA	NA	NA	NA
WP_015241679.1\|169400_170054_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_015241680.1\|170122_170392_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
WP_015241681.1\|170399_171209_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_015241682.1\|171195_172017_+	flagellar biosynthesis pathway, component FlhB	NA	NA	NA	NA
WP_074935214.1\|172512_172896_+\|transposase	transposase	NA	NA	NA	NA
WP_015241685.1\|172892_173240_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.0e-31	54.2
WP_015241686.1\|173317_174976_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-104	43.9
WP_015241687.1\|174975_175560_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	4.7e-16	36.6
WP_049589666.1\|176536_178621_-	recombinase family protein	A0A0H3UZF2	Geobacillus_virus	4.1e-06	20.5
WP_015241691.1\|178610_178880_-	hypothetical protein	NA	NA	NA	NA
WP_127642800.1\|178889_179126_+	hypothetical protein	NA	NA	NA	NA
WP_015241692.1\|179029_179767_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.4e-57	47.5
WP_086024521.1\|180605_180869_+	Y4bD/Y4pK family protein	NA	NA	NA	NA
WP_010967412.1\|181049_181499_+	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_010967413.1\|181521_181791_+	hypothetical protein	NA	NA	NA	NA
WP_015241694.1\|181780_183865_+	recombinase family protein	A0A0H3UZF2	Geobacillus_virus	3.2e-06	20.6
WP_015241696.1\|184817_185267_-	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_086019149.1\|185450_185732_-	Y4bD/Y4pK family protein	NA	NA	NA	NA
WP_064744411.1\|186065_186371_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012477217.1\|186367_186715_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-26	57.1
WP_024318593.1\|191378_192002_+	recombinase family protein	A0A219YB42	Aeromonas_phage	3.0e-13	31.7
WP_015241701.1\|192015_192810_+	class I SAM-dependent methyltransferase	M4QQF3	Micromonas_pusilla_virus	3.0e-05	27.8
WP_015241702.1\|192925_194035_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015241704.1\|196254_196434_-	hypothetical protein	NA	NA	NA	NA
WP_014531779.1\|196973_197270_+	hypothetical protein	NA	NA	NA	NA
WP_015241706.1\|197375_197723_-	hypothetical protein	NA	NA	NA	NA
WP_015241707.1\|197780_199739_-	FHIPEP family type III secretion protein	NA	NA	NA	NA
WP_015241708.1\|199741_200647_-	hypothetical protein	NA	NA	NA	NA
WP_010975403.1\|201142_201586_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010975401.1\|201582_201936_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_015241710.1\|201998_203651_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.1e-81	39.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_019848

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1059596 : 1072161

uncultured_virus(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015242463.1\|1059596_1060475_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.5e-21	27.6
WP_014531797.1\|1061067_1061517_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.8e-18	48.3
WP_010967386.1\|1061886_1062048_-	hypothetical protein	NA	NA	NA	NA
WP_014528059.1\|1062602_1062899_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.4e-21	57.6
WP_010967384.1\|1062974_1064612_+	chaperonin GroEL	A0A219YK78	uncultured_virus	2.5e-176	63.1
WP_010967383.1\|1065031_1065472_+	hypothetical protein	NA	NA	NA	NA
WP_003535606.1\|1066801_1067005_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_014989928.1\|1067269_1067542_-	hypothetical protein	NA	NA	NA	NA
WP_127642822.1\|1067556_1067925_-	DUF4055 domain-containing protein	A0A0A0RTF5	Escherichia_phage	8.6e-08	33.9
WP_015242471.1\|1068075_1068420_-	DUF2280 domain-containing protein	A0A125RNL6	Pseudomonas_phage	5.9e-11	64.7
WP_041169794.1\|1068392_1068680_-	hypothetical protein	NA	NA	NA	NA
WP_010967377.1\|1068760_1068961_-	hypothetical protein	I6S676	Salmonella_phage	8.5e-10	40.4
WP_014531801.1\|1069382_1069775_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014526646.1\|1070901_1072161_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.5e-30	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_019845

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019845_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019845_1

172348-172494

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019845_1

>merge|NC_019845|1|172348-172494|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NC_019845|1|1|172348-172494|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019845.2\|WP_013844979.1\|169601_170993_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NC_019845.2\|WP_010968395.1\|184259_185078_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_019845.2\|WP_003531955.1\|180866_181247_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NC_019845.2\|WP_015241004.1\|177527_179387_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NC_019845.2\|WP_010968385.1\|165010_166021_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_019845.2\|WP_010968394.1\|182436_184242_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_019845.2\|WP_010968390.1\|172524_173484_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NC_019845.2\|WP_010968392.1\|179678_180746_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NC_019845.2\|WP_010968386.1\|166028_167012_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_019845.2\|WP_014529988.1\|161383_162112_+\|pilus-assembly-protein-CpaD	unknown	unknown	gnl\|CDD\|227748
NC_019845.2\|WP_003531959.1\|175131_176265_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NC_019845.2\|WP_010968387.1\|168661_169471_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NC_019845.2\|WP_010968383.1\|162134_163421_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298
NC_019845.2\|WP_010968384.1\|163551_164952_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NC_019845.2\|WP_003537933.1\|167240_168404_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_019845.2\|WP_003537743.1\|171080_171425_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_019845.2\|WP_010968391.1\|173494_175123_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NC_019845.2\|WP_003531958.1\|176264_177347_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NC_019845.2\|WP_013844980.1\|181308_182328_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_019845.2\|WP_010968389.1\|171433_172288_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862

Protein	Function_ID	Function_description	E-value
NC_019845.2\|WP_013844979.1\|169601_170993_+\|leucyl-aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NC_019845.2\|WP_010968395.1\|184259_185078_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NC_019845.2\|WP_003531955.1\|180866_181247_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NC_019845.2\|WP_015241004.1\|177527_179387_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_019845.2\|WP_010968385.1\|165010_166021_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NC_019845.2\|WP_010968394.1\|182436_184242_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_019845.2\|WP_010968390.1\|172524_173484_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NC_019845.2\|WP_010968392.1\|179678_180746_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NC_019845.2\|WP_010968386.1\|166028_167012_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.10359e-56
NC_019845.2\|WP_014529988.1\|161383_162112_+\|pilus-assembly-protein-CpaD	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	3.19225e-111
NC_019845.2\|WP_003531959.1\|175131_176265_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_019845.2\|WP_010968387.1\|168661_169471_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NC_019845.2\|WP_010968383.1\|162134_163421_+\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120
NC_019845.2\|WP_010968384.1\|163551_164952_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0
NC_019845.2\|WP_003537933.1\|167240_168404_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NC_019845.2\|WP_003537743.1\|171080_171425_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NC_019845.2\|WP_010968391.1\|173494_175123_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NC_019845.2\|WP_003531958.1\|176264_177347_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_019845.2\|WP_013844980.1\|181308_182328_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NC_019845.2\|WP_010968389.1\|171433_172288_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26

>NC_019845.2|WP_010968389.1|171433_172288_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NC_019845.2|WP_003537743.1|171080_171425_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NC_019845.2|WP_013844979.1|169601_170993_+|leucyl-aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDAPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NC_019845.2|WP_010968387.1|168661_169471_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NC_019845.2|WP_003537933.1|167240_168404_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NC_019845.2|WP_010968386.1|166028_167012_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NC_019845.2|WP_010968385.1|165010_166021_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NC_019845.2|WP_010968384.1|163551_164952_+|CpaF-family-protein
MPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NC_019845.2|WP_010968383.1|162134_163421_+|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NC_019845.2|WP_014529988.1|161383_162112_+|pilus-assembly-protein-CpaD
MQKRSAARTSLERQPPMALNRLPHRVVLYAIVAALLAGCASKDKLATGALPDDYRTRHPIVLTEGERTIDIPIASGDTRLTQGTRDVIRGFAAEYRNASSSVIQIMLPRGSVNGHAAQIVRKDIRRLLAASGVSPKKMIETTYDASVTGDAAPIRLSYVAITAQTAPCGAWPEDLALNTLENRNYYNFGCATQSNLAAQIANPTDLVGPRQMSPIDAEQRGQVIDSWRGTDKGDGGTTIVFN
>NC_019845.2|WP_010968390.1|172524_173484_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NC_019845.2|WP_010968391.1|173494_175123_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NC_019845.2|WP_003531959.1|175131_176265_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NC_019845.2|WP_003531958.1|176264_177347_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NC_019845.2|WP_015241004.1|177527_179387_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEAREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NC_019845.2|WP_010968392.1|179678_180746_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NC_019845.2|WP_003531955.1|180866_181247_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NC_019845.2|WP_013844980.1|181308_182328_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NC_019845.2|WP_010968394.1|182436_184242_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NC_019845.2|WP_010968395.1|184259_185078_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Crispr_ID: NC_019845_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019845_2

1101959-1102072

Orphan

Consensus_repeat	Method
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019845_2

>merge|NC_019845|2|1101959-1102072|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAAGGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

>NC_019845|2|2|1101959-1102072|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	GGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTC
CGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019845.2\|WP_010969003.1\|1106367_1107294_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_019845.2\|WP_003527334.1\|1103736_1104624_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_019845.2\|WP_015241091.1\|1086054_1089015_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NC_019845.2\|WP_010969000.1\|1102517_1103516_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NC_019845.2\|WP_010968997.1\|1097796_1098657_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_019845.2\|WP_010969005.1\|1108789_1109809_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_019845.2\|WP_003527344.1\|1097481_1097658_-\|hypothetical-protein	unknown	unknown	unknown
NC_019845.2\|WP_003527345.1\|1097288_1097444_-\|hypothetical-protein	unknown	unknown	unknown
NC_019845.2\|WP_010968999.1\|1100288_1101953_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NC_019845.2\|WP_010968996.1\|1094786_1095725_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_019845.2\|WP_015007347.1\|1105827_1106229_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_019845.2\|WP_010968998.1\|1098729_1100019_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_019845.2\|WP_015241092.1\|1091706_1094361_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_019845.2\|WP_010968994.1\|1089025_1091344_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_019845.2\|WP_003527320.1\|1112471_1112792_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NC_019845.2\|WP_010969001.1\|1104713_1105727_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|274313
NC_019845.2\|WP_003527346.1\|1095734_1097024_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_019845.2\|WP_010969004.1\|1107309_1108797_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_019845.2\|WP_003527322.1\|1109904_1110861_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_019845.2\|WP_003527321.1\|1110889_1112392_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222

Protein	Function_ID	Function_description	E-value
NC_019845.2\|WP_003527334.1\|1103736_1104624_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NC_019845.2\|WP_015241091.1\|1086054_1089015_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NC_019845.2\|WP_010969000.1\|1102517_1103516_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NC_019845.2\|WP_010968997.1\|1097796_1098657_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NC_019845.2\|WP_010969005.1\|1108789_1109809_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NC_019845.2\|WP_010969001.1\|1104713_1105727_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|274313	TIGR02817, Putative_oxidoreductase_transmembrane_protein, zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. [Energy metabolism, Fermentation].	0
NC_019845.2\|WP_010968999.1\|1100288_1101953_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.40481e-104
NC_019845.2\|WP_010968996.1\|1094786_1095725_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NC_019845.2\|WP_015007347.1\|1105827_1106229_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.18039e-42
NC_019845.2\|WP_010968998.1\|1098729_1100019_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_019845.2\|WP_015241092.1\|1091706_1094361_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_019845.2\|WP_010968994.1\|1089025_1091344_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.01082e-54
NC_019845.2\|WP_003527320.1\|1112471_1112792_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NC_019845.2\|WP_010969003.1\|1106367_1107294_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NC_019845.2\|WP_003527346.1\|1095734_1097024_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NC_019845.2\|WP_010969004.1\|1107309_1108797_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52
NC_019845.2\|WP_003527322.1\|1109904_1110861_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NC_019845.2\|WP_003527321.1\|1110889_1112392_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0

>NC_019845.2|WP_010968999.1|1100288_1101953_+|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MTEQQELPERESMEFDVVIVGAGPAGLAAAIRLKQVSPELSVVVLEKGAEVGAHILSGAVVDPIGIDRLLPGWRDEPDHPFKTEVTDDQFLFLGPAGSVRLPNFLMPPLMNNHGNYVVSLGNVCRWLATQAEALGVEIYPGFAATEVLYNDEGAVIGVATGDMGIERNGEPGPNFARGMELLGKYTLIGEGVRGSLAKQLIAKYKLDAGCDVPKFGIGLKELWEVKPENHKPGLVQHSFGWPLGMKTGGGSFLYHLEDNLVAVGFVVHLNYKNPYLYPFEEFQRFKTHPAIRGTFEGGKRLSYGARAITEGGYQSVPKLSFPGGALIGCSAGFVNVPRIKGSHNAVLSGILAAEKLAAAIADGRANDEPIEIERGWRESAIGQDLKRVRNVKPLWSKFGTAVGVALGGLDMWTNQLFGFSFFGTLKHGKTDAQSLEPAAKHERIDYPKPDGVLTFDRLSSVFLSNTNHEEDQPVHLQVKDWDLQKRSEYEVYAGPSSRYCPAGVYEWVEKDGQQTFVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYPNM
>NC_019845.2|WP_010968998.1|1098729_1100019_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NC_019845.2|WP_010968997.1|1097796_1098657_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NC_019845.2|WP_003527344.1|1097481_1097658_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NC_019845.2|WP_003527345.1|1097288_1097444_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NC_019845.2|WP_003527346.1|1095734_1097024_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NC_019845.2|WP_010968996.1|1094786_1095725_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NC_019845.2|WP_015241092.1|1091706_1094361_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTASGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDAASAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NC_019845.2|WP_010968994.1|1089025_1091344_-|PAS-domain-containing-protein
MADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NC_019845.2|WP_015241091.1|1086054_1089015_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARCICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLETLKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NC_019845.2|WP_010969000.1|1102517_1103516_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NC_019845.2|WP_003527334.1|1103736_1104624_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NC_019845.2|WP_010969001.1|1104713_1105727_-|zinc-binding-alcohol-dehydrogenase-family-protein
MRAVAYKTPQPIANETALIDVDLPVPTPGERDLLVEVRAVSVNPVDTKVRAGVQPEPEQLKVLGWDAAGVVKAVGPKVTLFKPGDEVFYAGAIDRPGTNAELHLVDERIVGRKPQSLDFAAASALPLTAITAWETIFDRLRVNDPVPGAANAVLIIGGAGGVGSIAIQLLRALTNVTVIATASRAETREWALKLGAHHVLDHSRPLAAEIEQLALGAPAFVFSTTNTDKHVDEIVKLIAPQGRFALIDDLAVLDVTPFKRKSVSIHWEMMFARPLFGTPDMIEQHNLLNRVAELVDGGKIRTTLTETLGPIDAATLRKAHQMIETGRTRGKLVLAGF
>NC_019845.2|WP_015007347.1|1105827_1106229_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKRA
>NC_019845.2|WP_010969003.1|1106367_1107294_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NC_019845.2|WP_010969004.1|1107309_1108797_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NC_019845.2|WP_010969005.1|1108789_1109809_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NC_019845.2|WP_003527322.1|1109904_1110861_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NC_019845.2|WP_003527321.1|1110889_1112392_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NC_019845.2|WP_003527320.1|1112471_1112792_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR

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Crispr_ID: NC_019845_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019845_3

1985840-1985952

Orphan

Consensus_repeat	Method
CCCTCATTCCTGTGCTTGTCACAGGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019845_3

>merge|NC_019845|3|1985840-1985952|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAATGAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCTCCCTCATTCCTGTGCTCGTCACAGGAAT

>NC_019845|3|3|1985840-1985952|CRISPRCasFinder
CCCTCATTCCTGTGCTTGTCACAGGAAT	GAGGCAGAGAGGGTACGGTCCTTCGGAATACTTCTCGCAGGCCGTGCATCCCCGCCT
CCCTCATTCCTGTGCTCGTCACAGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019845.2\|WP_015241214.1\|1977496_1978318_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NC_019845.2\|WP_010969508.1\|1976515_1977199_-\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NC_019845.2\|WP_010969507.1\|1975364_1976492_+\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NC_019845.2\|WP_010969513.1\|1981843_1983526_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_019845.2\|WP_010969510.1\|1978689_1979883_-\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|227609
NC_019845.2\|WP_003535074.1\|1993296_1993839_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_019845.2\|WP_010969520.1\|1994865_1995549_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NC_019845.2\|WP_010969517.1\|1988639_1989542_+\|hypothetical-protein	unknown	unknown	unknown
NC_019845.2\|WP_003534108.1\|1973657_1974395_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NC_019845.2\|WP_010969519.1\|1991700_1993092_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NC_019845.2\|WP_003535076.1\|1993950_1994646_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_019845.2\|WP_015241215.1\|1990094_1991468_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NC_019845.2\|WP_010969512.1\|1981013_1981841_-\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_019845.2\|WP_003534093.1\|1983794_1985714_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_019845.2\|WP_010969521.1\|1995581_1997477_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NC_019845.2\|WP_010969518.1\|1989563_1989959_-\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_019845.2\|WP_013844510.1\|1986764_1988498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NC_019845.2\|WP_003534106.1\|1974552_1975197_+\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NC_019845.2\|WP_013844508.1\|1979980_1981003_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NC_019845.2\|WP_010969515.1\|1986340_1986763_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296

Protein	Function_ID	Function_description	E-value
NC_019845.2\|WP_015241214.1\|1977496_1978318_-\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	1.8661e-163
NC_019845.2\|WP_010969508.1\|1976515_1977199_-\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NC_019845.2\|WP_010969507.1\|1975364_1976492_+\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.36883e-30
NC_019845.2\|WP_010969513.1\|1981843_1983526_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_019845.2\|WP_010969510.1\|1978689_1979883_-\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	4.07293e-103
NC_019845.2\|WP_003535074.1\|1993296_1993839_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NC_019845.2\|WP_010969520.1\|1994865_1995549_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NC_019845.2\|WP_003534108.1\|1973657_1974395_+\|transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NC_019845.2\|WP_010969519.1\|1991700_1993092_-\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NC_019845.2\|WP_003535076.1\|1993950_1994646_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NC_019845.2\|WP_015241215.1\|1990094_1991468_-\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NC_019845.2\|WP_010969512.1\|1981013_1981841_-\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NC_019845.2\|WP_003534093.1\|1983794_1985714_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NC_019845.2\|WP_010969521.1\|1995581_1997477_-\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_019845.2\|WP_010969518.1\|1989563_1989959_-\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NC_019845.2\|WP_013844510.1\|1986764_1988498_+\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NC_019845.2\|WP_003534106.1\|1974552_1975197_+\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NC_019845.2\|WP_013844508.1\|1979980_1981003_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88
NC_019845.2\|WP_010969515.1\|1986340_1986763_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23

>NC_019845.2|WP_003534093.1|1983794_1985714_+|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NC_019845.2|WP_010969513.1|1981843_1983526_-|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NC_019845.2|WP_010969512.1|1981013_1981841_-|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NC_019845.2|WP_013844508.1|1979980_1981003_+|LacI-family-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NC_019845.2|WP_010969510.1|1978689_1979883_-|phytanoyl-CoA-dioxygenase
MKTDNPARARLERVWLNEAACDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NC_019845.2|WP_015241214.1|1977496_1978318_-|SDR-family-oxidoreductase
MSTDHARLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALEALTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NC_019845.2|WP_010969508.1|1976515_1977199_-|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NC_019845.2|WP_010969507.1|1975364_1976492_+|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEASLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NC_019845.2|WP_003534106.1|1974552_1975197_+|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NC_019845.2|WP_003534108.1|1973657_1974395_+|transcriptional-regulator
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI
>NC_019845.2|WP_010969515.1|1986340_1986763_+|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NC_019845.2|WP_013844510.1|1986764_1988498_+|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKLSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NC_019845.2|WP_010969517.1|1988639_1989542_+|hypothetical-protein
MQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NC_019845.2|WP_010969518.1|1989563_1989959_-|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NC_019845.2|WP_015241215.1|1990094_1991468_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVADGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NC_019845.2|WP_010969519.1|1991700_1993092_-|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NC_019845.2|WP_003535074.1|1993296_1993839_-|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NC_019845.2|WP_003535076.1|1993950_1994646_-|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NC_019845.2|WP_010969520.1|1994865_1995549_+|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NC_019845.2|WP_010969521.1|1995581_1997477_-|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	7231-7268	4	0.895
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	250765-250802	5	0.868
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1691497-1691534	6	0.842
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	126743-126780	6	0.842
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	188971-189008	6	0.842
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	99915-99952	8	0.789
NC_019845_2	2.1\|1101997\|38\|NC_019845\|CRISPRCasFinder	1101997-1102034	38	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	155054-155091	9	0.763

1. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 4, identity: 0.895

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgaatttt	Protospacer
** ******** *********************** *.

2. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 5, identity: 0.868

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtgatcatc	Protospacer
** ***********************.****** ..**

3. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgacgtcc	Protospacer
** ******** *********************   .*

4. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgagttcg	Protospacer
** ******** *********************.* .

5. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtaaccgac	Protospacer
** ***********************.****.* .* *

6. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 8, identity: 0.789

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
gggggcgaaggcccggtctatccgaacatgtagcccga	Protospacer
*********** *******************.. .

7. spacer 2.1|1101997|38|NC_019845|CRISPRCasFinder matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 9, identity: 0.763

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaggggccggtctatccgaacatgtagggcag	Protospacer
** *****.**********************...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1618348 : 1629597

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969277.1\|1618348_1619383_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6
WP_127528149.1\|1619476_1620295_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.0e-32	34.7
WP_010969279.1\|1620287_1621007_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_015241186.1\|1621071_1622181_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.0e-29	37.1
WP_003534564.1\|1622275_1622482_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969282.1\|1622555_1623203_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534569.1\|1623199_1624042_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_003534571.1\|1624178_1625462_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_010969283.1\|1625489_1626260_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_014526709.1\|1626256_1626910_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969285.1\|1627081_1627735_+	biotin transport regulator	NA	NA	NA	NA
WP_010969286.1\|1628058_1629597_+	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8

DBSCAN-SWA_2

2542015 : 2551650

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003532953.1\|2542015_2544070_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_107010522.1\|2544158_2544284_-	hypothetical protein	NA	NA	NA	NA
WP_013844736.1\|2544502_2545537_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_010969853.1\|2545560_2546748_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_010969854.1\|2547007_2548918_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969855.1\|2548963_2550967_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_003532937.1\|2551200_2551650_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4

DBSCAN-SWA_3

2567450 : 2632972

Streptococcus_phage(11.11%)

transposase,tRNA,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969865.1\|2567450_2567792_-\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_010969866.1\|2567899_2568718_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	3.4e-28	35.6
WP_003532890.1\|2568719_2569220_-	hypothetical protein	NA	NA	NA	NA
WP_010969867.1\|2569697_2569985_-	accessory factor UbiK family protein	NA	NA	NA	NA
WP_010969868.1\|2570270_2571113_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_013844743.1\|2571124_2572228_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010969870.1\|2572390_2573185_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_003532879.1\|2573186_2574338_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_003532877.1\|2574485_2575364_+	hypothetical protein	NA	NA	NA	NA
WP_003532875.1\|2575648_2576581_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.8e-47	37.5
WP_003532873.1\|2576621_2577452_-	oxaloacetate decarboxylase	NA	NA	NA	NA
WP_003532871.1\|2577525_2577903_-	DUF779 domain-containing protein	NA	NA	NA	NA
WP_010969871.1\|2578038_2579547_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_015241299.1\|2579810_2580767_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_080991191.1\|2581040_2582273_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_015241301.1\|2582440_2583055_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_010969874.1\|2583416_2584136_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003534512.1\|2584191_2584497_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_010969876.1\|2584727_2585831_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_003534506.1\|2586303_2586759_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010969877.1\|2586755_2587226_+	MaoC family dehydratase	NA	NA	NA	NA
WP_003534501.1\|2587271_2587814_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-35	45.5
WP_010969878.1\|2587988_2588174_+	DUF1059 domain-containing protein	NA	NA	NA	NA
WP_015241302.1\|2588192_2589452_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A1B0V011	Roseobacter_phage	4.3e-51	42.1
WP_010969880.1\|2589448_2590081_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003534495.1\|2590077_2590701_-	DUF1285 domain-containing protein	NA	NA	NA	NA
WP_013844747.1\|2591059_2592073_+	MoxR family ATPase	NA	NA	NA	NA
WP_010969883.1\|2592076_2592997_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_010969884.1\|2592993_2595807_+	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_010969885.1\|2595817_2597887_+	membrane protein	NA	NA	NA	NA
WP_010969886.1\|2597901_2598453_-	N-acetyltransferase	NA	NA	NA	NA
WP_010969887.1\|2598710_2599703_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_010969888.1\|2599868_2600075_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010969890.1\|2601169_2601661_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003534453.1\|2601743_2602646_+	metallophosphoesterase	NA	NA	NA	NA
WP_010969891.1\|2602839_2603355_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003534449.1\|2603358_2604186_+	anti-sigma factor	NA	NA	NA	NA
WP_003534446.1\|2604308_2604737_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010969893.1\|2604733_2604985_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_010969894.1\|2605122_2606832_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003534440.1\|2606932_2607070_-	hypothetical protein	NA	NA	NA	NA
WP_003534438.1\|2607302_2607890_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.1e-28	37.3
WP_010969897.1\|2609929_2610841_-	aminoglycoside phosphotransferase APH(3')	Q75ZG1	Hepacivirus	8.6e-17	30.2
WP_010969898.1\|2610872_2611337_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-28	47.1
WP_010969899.1\|2611333_2612254_-	cation transporter	NA	NA	NA	NA
WP_010969900.1\|2612422_2614612_-	anthranilate synthase	NA	NA	NA	NA
WP_015241304.1\|2614885_2617117_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_014529145.1\|2617240_2618227_+	extensin family protein	NA	NA	NA	NA
WP_010969903.1\|2618387_2620067_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_010969904.1\|2620157_2621381_-	DUF2333 family protein	NA	NA	NA	NA
WP_010969905.1\|2621384_2622674_-	hypothetical protein	NA	NA	NA	NA
WP_003537933.1\|2622857_2624021_+\|transposase	IS4-like element ISRm16 family transposase	NA	NA	NA	NA
WP_010969906.1\|2624198_2624603_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_010969907.1\|2624715_2626632_-	ATP-binding protein	NA	NA	NA	NA
WP_010969908.1\|2626635_2627784_-	hypothetical protein	NA	NA	NA	NA
WP_003535848.1\|2627845_2628934_-	hypothetical protein	NA	NA	NA	NA
WP_010969910.1\|2629094_2629682_-	thymidine kinase	A0A0K2FHC3	Enterobacter_phage	4.1e-52	54.7
WP_010969911.1\|2629968_2630925_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013844756.1\|2631080_2631926_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010969913.1\|2631922_2632972_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-20	33.7

DBSCAN-SWA_4

3261601 : 3273285

Anomala_cuprea_entomopoxvirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004435255.1\|3261601_3262390_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.9e-08	23.2
WP_010970327.1\|3262386_3263088_+	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	2.1e-07	24.9
WP_004435248.1\|3263091_3263979_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_013844886.1\|3263980_3264973_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_015241348.1\|3265020_3266616_+	FAD-binding protein	A0A1V0S9J5	Catovirus	2.6e-48	28.7
WP_015241349.1\|3266847_3268044_-\|transposase	IS256-like element ISRm5 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.5e-74	43.6
WP_127642836.1\|3268297_3269311_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	5.8e-22	30.5
WP_010970331.1\|3269511_3273285_-	methionine synthase	A0A140XBC7	Dickeya_phage	1.1e-12	55.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019849

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_019847

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_019848

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_019845

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection