CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019971	Vibrio parahaemolyticus BB22OP chromosome 2, complete sequence	3 crisprs	DEDDh,WYL,csa3,cas3,cas5f,cas7f,cas6f	0	1	0	0
NC_019955	Vibrio parahaemolyticus BB22OP chromosome 1, complete sequence	0 crisprs	cas3,DinG,csa3,csx1,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019971_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019971_1

68748-68845

Orphan

Consensus_repeat	Method
TATTTTTAAAATGCCTTTTCAAAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_019971_1

>merge|NC_019971|1|68748-68845|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAATTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAATATTTTTAAAACGCCTTTTCAAAAA

>NC_019971|1|1|68748-68845|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAA	TTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAA
TATTTTTAAAACGCCTTTTCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019971.1\|WP_005464962.1\|62042_63191_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NC_019971.1\|WP_015312761.1\|65241_65952_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_019971.1\|WP_015312760.1\|63484_64291_+\|arylamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366312
NC_019971.1\|WP_031791436.1\|58729_59134_-\|hypothetical-protein	unknown	unknown	unknown
NC_019971.1\|WP_005467181.1\|70256_70577_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NC_019971.1\|WP_015312759.1\|61141_61981_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NC_019971.1\|WP_005460834.1\|73282_73906_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NC_019971.1\|WP_005482884.1\|72341_73271_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NC_019971.1\|WP_015312763.1\|70617_71253_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|181746
NC_019971.1\|WP_005482845.1\|75959_76637_+\|porin	unknown	unknown	gnl\|CDD\|368776
NC_019971.1\|WP_015312764.1\|71331_72243_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NC_019971.1\|WP_005460804.1\|67906_68689_-\|DNA-binding-transcriptional-regulator-KdgR	unknown	unknown	gnl\|CDD\|185046
NC_019971.1\|WP_005464959.1\|59143_60235_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_019971.1\|WP_005482833.1\|60234_60696_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|226429
NC_019971.1\|WP_005482916.1\|68944_69706_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NC_019971.1\|WP_015312762.1\|65954_67823_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NC_019971.1\|WP_015312766.1\|76652_78881_+\|hypothetical-protein	unknown	unknown	unknown
NC_019971.1\|WP_005497706.1\|69724_70249_+\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NC_019971.1\|WP_005464972.1\|64371_65241_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176159
NC_019971.1\|WP_015312765.1\|74087_75830_-\|Na+:solute-symporter	unknown	unknown	gnl\|CDD\|271371

Protein	Function_ID	Function_description	E-value
NC_019971.1\|WP_005464962.1\|62042_63191_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NC_019971.1\|WP_015312761.1\|65241_65952_-\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.14775e-37
NC_019971.1\|WP_015312760.1\|63484_64291_+\|arylamine-N-acetyltransferase	gnl\|CDD\|366312	pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid.	3.07551e-95
NC_019971.1\|WP_005467181.1\|70256_70577_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.13072e-54
NC_019971.1\|WP_015312759.1\|61141_61981_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	9.23923e-144
NC_019971.1\|WP_005460834.1\|73282_73906_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.28455e-121
NC_019971.1\|WP_005482884.1\|72341_73271_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.15929e-102
NC_019971.1\|WP_015312763.1\|70617_71253_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|181746	PRK09273, PRK09273, hypothetical protein; Provisional.	7.69666e-144
NC_019971.1\|WP_005482845.1\|75959_76637_+\|porin	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	3.08357e-24
NC_019971.1\|WP_015312764.1\|71331_72243_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	2.92545e-18
NC_019971.1\|WP_005460804.1\|67906_68689_-\|DNA-binding-transcriptional-regulator-KdgR	gnl\|CDD\|185046	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional.	0
NC_019971.1\|WP_005464959.1\|59143_60235_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.06677e-44
NC_019971.1\|WP_005482833.1\|60234_60696_-\|oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	3.9997e-40
NC_019971.1\|WP_005482916.1\|68944_69706_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	0
NC_019971.1\|WP_015312762.1\|65954_67823_-\|CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	6.20926e-139
NC_019971.1\|WP_005497706.1\|69724_70249_+\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	9.00507e-50
NC_019971.1\|WP_005464972.1\|64371_65241_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14139e-108
NC_019971.1\|WP_015312765.1\|74087_75830_-\|Na+:solute-symporter	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.13046e-111

>NC_019971.1|WP_005460804.1|67906_68689_-|DNA-binding-transcriptional-regulator-KdgR
MEKSTQPEAVSSVLKVFHILQALGEQKAIGVSELSQRLMMSKATTYRFLQTMKSLGYVSQEGEADKYSLTLKLFELGAKSLEYVDLIELADKEMRHISEQTNEALHLGALDENAIIYIHKIDSGYNLRMQSRIGRRNPLYSTAIGKVLLSERDESFVRDVLSDVEFIKHTEKTLENTDQVLEELAKVRDFHYAEDNEEQEPGLRCIAAPIYDRFGQIIAGLSISFPTIRFDEERMEYYVGLLHQAGKNISEQLGYHDYPA
>NC_019971.1|WP_015312762.1|65954_67823_-|CBS-domain-containing-protein
MGTSVTPNIFDFLIKIDPFDKLPEPVVESITNSVKVKYLVRGETIGFSALCDQRYLYIIRTGAIEQRTPNGELRARLGQDDQFGFTFLDPLENAEDGYQAEAIEDSLLYLIPHSELKLVSEEHPEFADYFAAQANVRLSSAVKYVCRKEEKGLFFRTVGEIASENIAIVDVNDSIRSVAQTMCGKQRSSCAVVMKEGEIIGLVTDRDMTKSVVAQDMDTNQPIADVMTPNPVLIEDDAKVIQAISLMLQYNIRCLPVVHGKQVKGLLTTTHLVHNHRTQSLFLIEKIKYASSLNALAALKEERQTIFQALVESGVSAEIQGRVMSMIMDAFTRRIIQLNEELLGPPPCDYAWLVAGSHARNEVHMLSDQDSAIVLSDDATEEHKLYFTHLAMRVCNGLAACGYPLCDGKYMAASPKWCQPIRRWKEYYQKWVASPEYNKLLSISVFLEVRAIHGNREFVDQIQQHLHDCIQKSPSFIPALVRDAIDTQPPLGIFNNLVLEKGGENSNTLNIKKYALNLIIDLARIFSLAAGGSLTGTEERFRYAAQHGTLSKDSVENIIGAYRFITQVRFRHQLNAILAGTTPDNHIAPDDFSSFERKHLKDAFKIISELQDVAKLKFVKGA
>NC_019971.1|WP_015312761.1|65241_65952_-|3'-5'-exonuclease
MIKRWFKRWETPLSPEQKRQAIHVIDDWPMVLKDYLQRPLVDDSTTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQALAKGLPLDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSRYQVEDFPAYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFLVQSKKLTALPDVTLRQLMR
>NC_019971.1|WP_005464972.1|64371_65241_+|LysR-family-transcriptional-regulator
MANWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGRLQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTLSELGRHQCLVGSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQELA
>NC_019971.1|WP_015312760.1|63484_64291_+|arylamine-N-acetyltransferase
MNKTDLNAYLTKLGLPSELPADLESLHKIHVAQHRCLPFENFDISLQRGISVEIEEIIQKTVYHSRGGYCFELNGLMLDVLNTLGFEARSLLGRVHVMGTPTGRSHQITLVTLDEQAWIVDVGFGSNTPRAPLPFILNQVIQTDLQTFRFVEDAQFGYFLQVLSTDGTDTWNNLYSFDLEFVFAGDIACGNFFTSTSPHSRFTSARVAAKATESGLVTLLNYTLKYTSEGEHTELELEPGQAYLDALKEYFGIELDAQYGDLRPLPDA
>NC_019971.1|WP_005464962.1|62042_63191_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MTLEIKPGQTHIKSKAMVAWAAGEPLKMEEVDVQLPKAGEVLVRIVATGVCHTDAFTLSGDDPEGIFPSILGHEGGGIVEMVGEGVTSVEVGDHVIPLYTAECGECKFCKSGKTNLCQAVRETQGKGLMPDGTSRFSINGETIFHYMGCSTFSEYTVLPEISLAKVNKQAPLEEVCLLGCGVTTGMGAVLNTAKVEKGDTVAIFGLGGIGLSAIIGARMAGASRIIGIDINESKFDLAKQLGATDVINPQKFDKPIQEVIVEMTDGGVDYSFECIGNVNVMRQALECCHKGWGESVIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRSELPEIVNRYMAGEFGLQEFITHTMGLEDVNKAFDLMHEGKSIRTVIHMDK
>NC_019971.1|WP_015312759.1|61141_61981_-|S-formylglutathione-hydrolase
MTIENVSQTKVFGGWHKQYTHDSKALNCTMRFAIFLPPNATKSNPVPALYWLSGLTCTDENFMQKAGAFRMAAELGIAIIAPDTSPRGEGVADDASYDLGQGAGFYLNATQAPWSLHYHMYDYVTQELPAIIESNFPVTDVKSISGHSMGGHGALTIGLKNPTLYRSISAFSPISNPMQCPWGQKAFTAYLGTDIESWKQYDASELLKKEKSPLPILVDQGDADGFLSEQLKPEVLLAAAKQHGSELNLRMQSGYDHSYYFISSFIDNHLNFHAKYLFA
>NC_019971.1|WP_005482833.1|60234_60696_-|oxidoreductase
MKKIVSLSLLLFAPFLSANSITFSSPQQPSVTLKLEELQSLPTTSYTTDLPWIQQSSEFLGVKLSTLLTHVYGSIPEQVDIGSLNNYHSTLSRKDIVRYQPILAYQQDHHYIKVRNKGPYWVIYPLSQYPELDHNEYHAQMVWQVNEMKIKQK
>NC_019971.1|WP_005464959.1|59143_60235_-|GGDEF-domain-containing-protein
MKLSEAYPIKQKNYSTTSKMLLLVFATSLLLANVILLQQTRVLAQSFTDEQKQATWFLFQLSKELSELVSEARRLDENVLKIEGAELQYELAWSRFDLLINSKDVYTFFSRNHIQQYFLQLFNEFKELEPLLVEAKTGDSQAAAQFYRATQTLYLNLVEFVNQNFRLTSQVYETQKDESQRLMKAQYMLFATFVLSILSLTYFFYRESHFHRKLALSDPLTGLGNRNALFVTLRNNTRNRTAFSLCLLDLNGFKNVNDTYGHQAGDTVLCEIAKRLKDMNIDSFSTYRMGGDEFAVVIESSDVDAEEAKKHIHSVFDTPVLNANNVSSLSTSIGVAHYPSDSDNVDFLISIADKRMYKMKFQR
>NC_019971.1|WP_031791436.1|58729_59134_-|hypothetical-protein
MMRKFMQVLLLLAVIAAGVLAWVFIPSHETIGQKTLEQALSDDYSLVGHRIYSTDPDAGNRFGYFVLATGQSIEEQEPFLVTSDQFIRMEQTGDNTLSVTVNGRIYQYHNDLWVPKSDGKLQHFLVSATAKYVR
>NC_019971.1|WP_005482916.1|68944_69706_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILDSFNLEGKVAIVTGCDTGLGQGMALGLAKAGCDIVGVNISEPTETIEKVEAEGRKFVDIRANLMKLDDIPTIVDRAVTELGRIDILVNNAGIIRRNDAIEFSEQDWDDVMNINVKSVFFMSQAVAKQFIAQGEGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWASHGINVNAIAPGYMATNNTAALRADEQRNKEIVDRIPAARWGTPEDLAGPCVFLASKAADYINGYTIAVDGGWLAR
>NC_019971.1|WP_005497706.1|69724_70249_+|YgjV-family-protein
MVDTTILAQALGFISFGLGFSVFYQKNDRHLKILMLIFNLNHLLHFLLLGSMVSALSALLSALRTTTAIFVSSKRVAAVFIVISLVSGFWVAEQWRDLWPIIGTVIGTYSVFCLSGIRMRIGFLLGASCWLTNNILVGSIGGTLLEMTVIVMNLLTIYRLHRQQSESMINQSSY
>NC_019971.1|WP_005467181.1|70256_70577_+|cupin-domain-containing-protein
MFVFNQDIPMEDLGEGISRKVLAHSDNMMSVEVHFEEGAIGAMHSHPHEQLTYVLSGEFEFTIGDEKKIVKTGDTMYKEPNIEHGCVCLKAGVLIDTFTPMRKDFV
>NC_019971.1|WP_015312763.1|70617_71253_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIALMMENSQAAKNVMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANAAILNNVKAAVAKDVVEGLRAIDQELVKTAVGSTQFQECFFAHCQVPEIAEYVKSLLD
>NC_019971.1|WP_015312764.1|71331_72243_+|alpha/beta-hydrolase
MHVAPITSLQTWFPEHLVLPLWSEPQIPSHLVQSYQERNPNELLPDRAVFEITHPEMVVFEPEQSNGIGILLMPGGGYQRVSVDKEGADSARVLNQAGFTVFVMTYRMPNEGHEFGAWTPLADAQRAMRLVRQLPLASHLSSIGVLGFSAGGHVAASLATSHALDIYPLQDEADRVSAKPDFCALMYPVISMSTDIAHMGSRAELLANLERESDLLRFSLEKQVTSDMPPCFLLHASDDTAVSVENSIVFWQALRQHEIATEMHLFEQGKHGFGIRDAQGLPVAAWPKLLSAWLQNLTEKARR
>NC_019971.1|WP_005482884.1|72341_73271_+|sugar-kinase
MNPISRVAIIGECMVELKKHDGVLQQGFGGDTLNTAVYLSRLTKQHGVETSYVTGLGHDPFSREMLTAWREEGINTDMVYLSEDKLPGIYAIETAEDGERSFFYWRNDAAAKYWLRERALLSLVKDLCQHQMIYLSGISLAIISDDCRQMLIELLTMCRKEGVKIAFDNNFRPKLWPNIEQARDFYSKILSVTDMAFLTFDDEVMLWGDKHEDEAISRTKNFGVKEIIVKRGADDCFVVTQDQQHTVAALKVDAVVDTTAAGDSFSAGYLAKRILGGDVAESALAGHKVAGTVIQHRGAIIPSQAMPTI
>NC_019971.1|WP_005460834.1|73282_73906_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKDLNQQLSEIKVVPVIAIKDAGKAVKLAQVLIENGLPCAEVTFRTEDAALAIKNMREAYPEMLIGAGTVLTSAQVDEAIDAGVDFIVSPGFNPTTVKYCQQRNVTIVPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGVAMLKALSAVYPVKFMPTGGVSPSNVKDYLSISSVLACGGTWMVPGDLIDNEQWDELAKLVREVAGIIE
>NC_019971.1|WP_015312765.1|74087_75830_-|Na+:solute-symporter
MTLLDSMIVMIYLLFIGIAAWLFRRFSTSSNDFLQGGGTMMWWMAGATAFMTQFSAWTFTGAAAKAYEDGISVMFIFWGNALGFFVAAAFFARRYRRLRVETAMEVIRVRFGHTSEQLFTWLSFPLTLIACAIWMNGLASFFSAVFAIEMSTTILAMGVIVTLIAVSGGAWTVSVTNVIQLILLIAITLVIGYTALQRFDSPSEVFAYTTPIYGEQIRMPSLFVMWAIAMLLQQTMSNNHTLSCYRFLTTANDKDATKAAFVAGVLFVFAPVLWFMPAWFVAAQNIDLLAIYPALEQSANNAAYLYYIQHYMPQGLLGLVMVALVAATIAPLSSTHNRNAGIVVKSLYQVWFNPNATNRQQLMVGKIATIVSGVLATVTALLLASVESYSLFDMMIVFAAFIQMPINIPSLLALVSLKTPNWSGWATVMVGCAVSLFMMFIFDVQWISSSPLTPRESKDLSVVATLAVHLLVTGGFFLSTRVFYAKESPSIQQSRTALAIQLATPISDEEQSPINHKQGLYVGSITASAGMLLILAGVVLAGSSQSIFVAIGCIVLLFSLFLLQPTQHSKRAWQKQKLSK
>NC_019971.1|WP_005482845.1|75959_76637_+|porin
MKVRYLTSALLLAMTSGLAAAASVDIRHEYVPDRDGDEHRDRIYVSHRFDNQIGFSVEAKWNYKDGHMGNAGHETGVSYRWKATDNFSLTPGINIDASPSGASVFKYNLTGAYKINDEWDVAARIRHGYKNTDDSRYNQLNLYANRKFEWGKLGVEAEYKDIHGGEGGWKDKGHDQLIDFKGEYTKLESGVIPFFAIAAITHKGDGSEFKDEYVPRFRVGLKYNF
>NC_019971.1|WP_015312766.1|76652_78881_+|hypothetical-protein
MKKHTLALCLAAILAPAAHAAEIKVEDLTWKAITFGQSTDMNFGSTILPEKVGVNQVTFNGEAVAAGKLASTFTIESRGGKLANSHEGLTFYYTELPTDVNFTLSADVVLEQLGPETGATPNRQEGAGLMVRDILGAERLVPQPEGHEEFPSASNMVMNLMRSHTRTNDGMTNINASFREGVYQPWGTPGNRLSRVDYVEGVPYGTAETYRMTLTRTNDGFKVSYRNGEKFVEQAVKGANANIVEMQNSDSQYVGFFASRNAKMTVSNVDLQLAAADTVDAPKYAAKQGELVFQIASSPRSATKEYPVQARANYSGEFEVLHNGKVVAKQTVTAGELFSQWLTLDSGANQMEVRFTAIDGPNKETQAHRYSVDVVSLPDPMTLYVAPNGSDKGNGSQAQPLDFATAVELLPAGGTIILKDGDYQGMEIPLTASGSADKLKHLRAEGDNVRFVSELRHEANYWHYQGIEVAGAQFIVHGSHNTFEKMVTHGAPDTGFVITSPENIGRALWASYNQVIESESYNNMDPSQINADGFAAKMRIGDGNTFIRCLSHHNIDDGWDLFNKVEDGANGAVTILDSISFSNGRTLDVANKGGTIGNGFKLGGEGIPVPHVVKNSLSFNNNMDGFTDNFNPGALVLSDNVSIDNKRFNYLFRKSPYSGEIEQGTFTNNRSYRFHVSSKYDDVINSAKSTGNALVENGTTYTSDGKAVDSKTLAPLKQASVIDTQQAIPGKQEAMQLKQLIH

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Crispr_ID: NC_019971_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019971_2

599457-599590

Orphan

Consensus_repeat	Method
GGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019971_2

>merge|NC_019971|2|599457-599590|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGCAACCGTGGTGGTGAGCGTCGTGAAGGCGGTCGTCGTGAAGGTGGCTTCCGTGGTAACCG

>NC_019971|2|2|599457-599590|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGG	TCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGCAACCGTGGTGGTGAGCGTCGTGAA
GGCGGTCGTCGTGAAGGTGGCTTCCGTGGTAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019971.1\|WP_005462115.1\|592350_593031_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NC_019971.1\|WP_015313058.1\|587201_589571_-\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NC_019971.1\|WP_015313065.1\|607155_608001_-\|methylglutaconyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235664
NC_019971.1\|WP_029826404.1\|609677_610847_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NC_019971.1\|WP_015313064.1\|605669_606221_+\|arabinose-efflux-permease	unknown	unknown	gnl\|CDD\|227700
NC_019971.1\|WP_015313063.1\|603166_604480_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779
NC_019971.1\|WP_049878135.1\|586244_587180_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176155
NC_019971.1\|WP_024701380.1\|599794_601333_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NC_019971.1\|WP_015313061.1\|594527_595331_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NC_019971.1\|WP_005462123.1\|594169_594523_+\|DUF3024-domain-containing-protein	unknown	unknown	gnl\|CDD\|371425
NC_019971.1\|WP_005485953.1\|604765_605644_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_019971.1\|WP_015313056.1\|584349_585900_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_019971.1\|WP_015313060.1\|590952_591906_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_019971.1\|WP_005462121.1\|593085_593913_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NC_019971.1\|WP_015313066.1\|608038_609643_-\|methylcrotonyl-CoA-carboxylase-carboxyl-transferase-subunit	unknown	unknown	gnl\|CDD\|178415
NC_019971.1\|WP_005483382.1\|601693_602887_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|183528
NC_019971.1\|WP_015313068.1\|610925_611300_-\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133403
NC_019971.1\|WP_015313062.1\|595402_597409_-\|exoribonuclease-II	unknown	unknown	gnl\|CDD\|179920
NC_019971.1\|WP_015313059.1\|589578_590817_-\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
NC_019971.1\|WP_029826295.1\|606256_607159_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|180206

Protein	Function_ID	Function_description	E-value
NC_019971.1\|WP_005462115.1\|592350_593031_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	4.13783e-69
NC_019971.1\|WP_015313058.1\|587201_589571_-\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NC_019971.1\|WP_015313065.1\|607155_608001_-\|methylglutaconyl-CoA-hydratase	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	2.45013e-98
NC_019971.1\|WP_029826404.1\|609677_610847_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NC_019971.1\|WP_015313064.1\|605669_606221_+\|arabinose-efflux-permease	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	2.85117e-24
NC_019971.1\|WP_015313063.1\|603166_604480_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	5.67564e-45
NC_019971.1\|WP_049878135.1\|586244_587180_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176155	cd08466, PBP2_LeuO, The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold. LeuO, a LysR-type transcriptional regulator, was originally identified as an activator of the leucine synthesis operon (leuABCD). Subsequently, LeuO was found to be not a specific regulator of the leu gene but a global regulator of unrelated various genes. LeuO activates bglGFB (utilization of beta-D-glucoside) and represses cadCBA (lysine decarboxylation) and dsrA (encoding a regulatory small RNA for translational control of rpoS and hns). LeuO also regulates the yjjQ-bglJ operon which coding for a LuxR-type transcription factor. In Salmonella enterica serovar Typhi, LeuO is a positive regulator of ompS1 (encoding an outer membrane), ompS2 (encoding a pathogenicity determinant), and assT, while LeuO represses the expression of OmpX and Tpx. Both osmS1 and osmS2 influence virulence in the mouse model of Salmonella. In Vibrio cholerae, LeuO is involved in control of biofilm formation and in the stringent response. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.59478e-26
NC_019971.1\|WP_024701380.1\|599794_601333_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.75521e-91
NC_019971.1\|WP_015313061.1\|594527_595331_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.04109e-25
NC_019971.1\|WP_005462123.1\|594169_594523_+\|DUF3024-domain-containing-protein	gnl\|CDD\|371425	pfam11225, DUF3024, Protein of unknown function (DUF3024). This family of proteins has no known function.	1.37712e-19
NC_019971.1\|WP_005485953.1\|604765_605644_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.12613e-12
NC_019971.1\|WP_015313056.1\|584349_585900_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.60862e-62
NC_019971.1\|WP_015313060.1\|590952_591906_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.46511e-31
NC_019971.1\|WP_005462121.1\|593085_593913_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.95335e-86
NC_019971.1\|WP_015313066.1\|608038_609643_-\|methylcrotonyl-CoA-carboxylase-carboxyl-transferase-subunit	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_019971.1\|WP_005483382.1\|601693_602887_+\|acetate/propionate-family-kinase	gnl\|CDD\|183528	PRK12440, PRK12440, acetate/propionate family kinase.	0
NC_019971.1\|WP_015313068.1\|610925_611300_-\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133403	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	9.99851e-52
NC_019971.1\|WP_015313062.1\|595402_597409_-\|exoribonuclease-II	gnl\|CDD\|179920	PRK05054, PRK05054, exoribonuclease II; Provisional.	0
NC_019971.1\|WP_015313059.1\|589578_590817_-\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	0
NC_019971.1\|WP_029826295.1\|606256_607159_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|180206	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional.	2.1305e-175

>NC_019971.1|WP_015313062.1|595402_597409_-|exoribonuclease-II
MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKVVAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLKPDNFAEGDWVVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGIENWELKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENDNSDAWQPSEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELALHRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGALILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAAQTEQTVSEE
>NC_019971.1|WP_015313061.1|594527_595331_-|helix-turn-helix-domain-containing-protein
MPNIEIIRFNHFTARKSERYTATHNGLYVVEEGALVVHQPNGEQFELQAGDFTLYNSSDLRSAEAIPGENGFKAVALVFDISLFCEFKKAHPGLHSEAEHRRFYPFSPESNSEITQLKNTLLVLASRNAPDYTQSHIAMALLSLMVEVQPDILSIIDDASSLTASQKAIKYIEKNIEKDITLEGLAAHMSMSIATLKRRLAAENLSFSQILKVKRINYAATQLRVSQKSITEIAFESGFKSAAHFSTAFKSIYNITPKDFRNQVVRG
>NC_019971.1|WP_005462123.1|594169_594523_+|DUF3024-domain-containing-protein
MSVSQMATSRLYKLVQILCSARNANLPVEQGKCLYEPIENGVELHHAHFLLDSQHSEYTSPIAKILFDSQTQLWRFYVPASRSEEIRWIPYKKLPHSHTLEDLLAELESDPQACFWE
>NC_019971.1|WP_005462121.1|593085_593913_-|phosphate-ABC-transporter-substrate-binding-protein
MLRFTVATLLAMAVSLPSAMAKEVNISGSTSVARVMDVLAEEYNKTHPDNYIAVQGIGSSAGITMVNKGVVKLGMSSRYLTESEKGEDLNVFPIAYDGLAVVVNRTNSVTNLSAQQLFDIYKGEIKNWKEVGGADQPIAVVTREASSGSRYSFESLLGLTKIINDRLVSDISPNNLVVNSNSMVKTIVNHNTRAIGFISVGSVDLSVKAIQFNGIEPTAANIANHKYKLARPFLVLYKVDSLDQAGKDFVAFLKSEAGQKTIADYGYIPVKNFNQ
>NC_019971.1|WP_005462115.1|592350_593031_+|MaoC-family-dehydratase
MKVTNLFKDKVDAISAHQSEFMNWMSPTLRDYWSDFLGKAQNSFLFSNVRDHNQPAVNEEVAPQPAPIVLQPEAQKLYDELSGKIGEVIHTGDWVHVSQERINQFGAVTEDMQWIHTDPERASVESPFKTTIAHGFLTLALLPKLTDSVDADKPLFPTAKLVVNLGLNQVRFPYPVKAGNNVRAVSTLTKVTPIKKGLEIEREIKVEIEGVRRPGAVVVSVIQLHF
>NC_019971.1|WP_015313060.1|590952_591906_+|LysR-family-transcriptional-regulator
MIFNYNLLKPLALLLETKSITATANQMSTSASAVSRTLRSLREIFQDELLTRKNGRMELTPKAIAIRAKLNNIIHDIDELTEDMSFEPSTSDIKINIAMNSYIAYWLAPEIIQYFSENAPNIELTIEDWNELTPDRINNQLVHFGIHYFPLNLNKNLVQRKVGKDMSVMVCRKDHPINNESISLETIASYPLAIHLQKHWNERQDKLSRLLLSHGIDFKVKLKTTHINVIINAVETTDLLFPCSIYIAEQLGEKFSYITSSDEVFLPLQEKEFGFIYDKAYKNDPMIVWLHSTISKLMNDFLDVYNKKFDNRYEKSR
>NC_019971.1|WP_015313059.1|589578_590817_-|anaerobic-sulfatase-maturase
MAGLHTTVKVVGSKCNYDCQYCFYLEKDLLLKSKKSMNIETLETYIKNYISSQDTPIVEFAWHGGEPTLIGIDFFEKAVEFQKQYANGKLIKNTIQTNGSKLNSDWCRFFRENNFLVGLSLDGPEWLQEKYRTKQGKSAFKESFSALKLLQKMNVEYNVLACVTKEYCKHAEAIYSFFRKNKVKHIQFSPIVESSPLETEQARGQHFGSNLIFSTDKRHTVPQKYEPIAWSVDAKEYGRFLTDVFHLWISQDVGKVFISNFEQALTQYLGNPSPNCIHAKKCGSSYAVEANGDVYFCDHVAYPESKLGNVFETSLHEMSLNHELQFNKESRLSMRCKQCQFLSLCNGGCPKHRYLSDTGEYENVLCDGYFYFFSSVQKYLQAMTTLLAHGYPASYVMQALDGPLILTPSNKR
>NC_019971.1|WP_015313058.1|587201_589571_-|arylsulfatase
MDILKTTVTITGALAPCLVAAGTVDRTKLPIPDIEPQTYTQLDVRDVQRPEPTRRIAAPKDAPNVLVILLDDVGFSQSSLFGGAVDMPTLDALAKQGLIYNQFHTTGVSSATRTALLTGRNHHQNNMGSIAETSTAFPGNTSVRPNYIAALPKILKYNGYSTAMFGKNHEIPAWETGPAGNQTLWPSEVGFDKFYGFFGGETDQFQPVLIDGNTRIKTPRKKDYHFTADMTDQTIEWLNLQHSYNADQPFFAYYAPGAAHAPHQAPREWIDKFKGKFSMGWDKLRQESFERQKKLGIIPQDTVLPPMPDFVPRWDSLSSDEKRVFERQMEVYAGFLAHTDHEIGRVIDTLKKNGEFDNTLIFYIVGDNGASAEGNRNGSFNSLAFYNLITEDPNRVLENIDKLGGPDSFPHYASGWAVAGDSPFTWTKGMSSDFGGTRNGMVVSWPAGIDNKGQPLRDQWSHVVDIAPTVLEAANLPVPKEVDGVEQIPMAGVSFTNTFKETKAQTRHKPQYFELGGNRAIYHEGWLARVTHWALTEGSTKFRDLQDDKWELYDTTKDFSLANDLAKSNPQKLEELKKLFDKEAEKNHVYPIDDRTMERVNAEIAGRPDALFGKKSLTLYEGARGIPENSFLNIKNKSFDIVADISTDNASKTNGVIIAQGGNFGGWTLYVKNGVPTFEYNWLTYEYTKVSGSKLKEGKNEIKVAFRYDENGQGGKGNAAGRGKGGNVYLYVNDKLVEKKLIPNTNSRLFSLDDGVGIGEDEGGAVSKDYQAPFEFNQKIEQVTTSIVQ
>NC_019971.1|WP_049878135.1|586244_587180_-|LysR-family-transcriptional-regulator
MLIVAQESLRTPVDFPNNSLLEFKMSKAIDLNLINTFIVVTECLSYTKAADKLGVTQPAISASIKRLERTTNTKLFTKRGRNIELTSTAQKWLPQLQQALSVIDSVITQPAPYNVYCSNIYPAQQSKLENVFFHESTLSENHLFSLLYSNEADLLLGDIESREASIIVEDVCREPCVVICRNGHPRIDDHISTEMLSDEKHCVLASKWSFDTEFEKHLGLIVKSNNIDSIASNYLGILTHVAQNDCIGVIPLSLAKKWGKTFNIKHFTSPFGACFIQYQIAYHQRKVNCKRHGAMRALIKSRVLEDQQRII
>NC_019971.1|WP_015313056.1|584349_585900_+|methyl-accepting-chemotaxis-protein
MSEKEYDYPASYSLVSITDPSSYIKYASAHFSEVAGFEEGELIGKPHNVVRHPDMPKQAFKDLWSHLKAGKHWMGMVKNRRKNGGYYWVDAFASPIKYNGEIVEYQSVRFKPERIYVKRAEKAYAKLRNDKKPLQLYLPRTRLWMRAAFFLFISNFLGLLLLEMNQSPMVAFSAAALLSALSIYMLTRPIEKLAKQARQDFNNPLMEYIYCGKVNDLAEIELAMKMRKQFANALLGRVGVSVKDSCEETKTNADSAADNSERVTENLSAQKIEIDSVATAVNEMQASSSEISHNAQATADATLKAQNTMTDSRNVIDNVNHSVLDLVGELGEISKVVMRLNQQTDQIGTVIEVINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQESTTEIKSAIESIQHGSKSAVSALEKGNEMSTGTVTLLGTALESIQQLESLIQDVVERNQQIAVAIEEQVYVTDEINENIQSLNLKYSESYDLMTETNQMNSRVQNCTNELSDMIKKFA
>NC_019971.1|WP_024701380.1|599794_601333_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MTKNICSKTEVPGWTWLLMLISCFIFAYAAFLHAIMKKPVASLLETGVSLLLFGGSIFVVLVIKWSNDSILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRIQSGDPFSVILFDVVNFKQVNDAMGHFCGDQLLIQIGQRLQDKLKGNDKIFRVGGDEFVILTSSACEKTGTELIESLDCALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDMNVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDFIPIAERSNQVHNITMWVLGQVEKDLKTFIEKGIKLPVHVNLSAKDLSSNLLFHRLEKLLENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLPVDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDIIQGYLFCPALPLNEVINWVNEHDDKQSHTRRA
>NC_019971.1|WP_005483382.1|601693_602887_+|acetate/propionate-family-kinase
MSNSFVLVINSGSSSLKFAVIDSVSGDAVLSGLGECFGLSDARMSWKFNGEKKEISIEGDDSHHKIAIGKLVGLTEELGLAQDIVAVGHRIVHGGEKFTKTVRITEEVTQEIEKLADLAPLHNPAGAIGIRAAVEAFPSLPQFAVFDTAFHQTMPQRAFTGAIAKELYTDFGIRRYGFHGTSHYFVSREAAKMINKPIEESSFISVHLGNGASVCAINNGESVDTSMGFTPLSGLMMGTRCGDLDPGIIEYLLKKGWSQEKVFNSLNKASGFLGVSGLTSDARGILEAMEEGHEGAALAFQVFTYRVSKYIASYLAALDSFDGIIFTGGIGENSMPIRREILKNLKLLGFVEDVKGNEDARFGNAGVIATSELLGAKALVIPTNEEWVIAQQSVELL
>NC_019971.1|WP_015313063.1|603166_604480_+|PAS-domain-S-box-protein
MFFNKSLQQENQQLKQELYSLQQIQQSLDEEMLRLTLDAKGNVTSANQKFLQQLSLSDKDILAKHISDLVPSNVRNTDHFYRMKESVQAKAFWNGAFQITKGDGEEAWLRVVIQPVRNTSDQVESFFVFASELTRTITTSREYEDMLNALSRSMAVIEFTLDGTVLKANDNFLSTMGYKHEQIVGKHHRIFCLPEEANSSAYHDFWKRLASGQFVTDRFKRVDQYGSVVWLEASYNPIHNDRGELYKVVKFATNITQQVLQEQSMAQAAQLANEVSQETGTQTVQGRQVIGSTLEKMQTLSEQMQQANAAIEDLKAHSSKISELVNSISGIADQTNLLALNAAIEAARAGDHGRGFAVVADEVRQLAMRTNTTTDEIVSMVTENLERTNNAVALISQCQKEALDTLELSEKAGNVMNDIQDGASRVVEAVAQFNRTL
>NC_019971.1|WP_005485953.1|604765_605644_+|DMT-family-transporter
MFNSERKATVILVATTMIAALGWIFSKETIQGLPPFGFIGLRFTIASLCLLPLCYRPLKAARLKDVLAASGVGLLLGGAVMTWIYAISISDTLGEGAFIMSLSMLFVPIVAWVMFQQRPQRIFWISLPIAVIGLACLSLAGGWKQSASQLWFLGAALILALHFNVNSKYSQKLPVLLLTCVQLFSAGCLGLLVSFLMESRPEQVDSSIWWWFALSTLLATSLRYVMQTMGQKFVQAGNAALIMILEPVWTVVLSILWYGEVLTANKLVGCLLILFSLVIYRTGGRFRFPKRA
>NC_019971.1|WP_015313064.1|605669_606221_+|arabinose-efflux-permease
MANTEHQETLDFLDKLSVCLYRAGISVFAIALLGLAALESQWLDGMDGRYRAVFAVFTIAGAMSASNIHVYSKSVRTIISWSGWIGAILMVCDPELNRVWLALGFIFVTFSGIALKESFCFKVLGLKLVPTLLVVTTFALWFEQSTIVAISALLAGLIMAYLSIAKWRMPLHFDIGIKANYEV
>NC_019971.1|WP_029826295.1|606256_607159_-|hydroxymethylglutaryl-CoA-lyase
MTLPTNVNIVEVGPRDGLQNESPVSTRTKIRLIDLLSDTGLSHIEAGSFVSPKWVPQMADSKEVMQNITRRASVTYSALTPNLQGLEQALDAGANQVAIFTSASEGFCQHNINCSITESLKRFEPLMVQADKYHVPVRGYLSCVVDCSYNGATSPTQVANISQALIELGCYEVSLGDTIGTGTPNRIKEMLESVLARIPNQRLAVHFHDTWGQALANIYQALSMGINTVDSSVAGLGGCPYAHGASGNVATEDVLYLCQGLGIETGVDLELLAKAGWMISDELQRQPTSKVSQALRHRME
>NC_019971.1|WP_015313065.1|607155_608001_-|methylglutaconyl-CoA-hydratase
MQERQPSIVPNAQRHNDVLWQVDEFGVATLTLNRTKKHNAFDACMIDLIIHRLDYLALRTDVRCLVLRSNGKHFSSGADLAWMQSMANSTRKENLVDAQSLARLMETLDAFPQPTIAVVQGSAFGGALGLICCSDIAIASHSAQFCLSEVKLGLVPATIAPYVMRAMGNRQARRYILSGEVIPAVKAQQFGIVHEVKKDEELESCVSEVVASLLLNSPDAMRKAKALCEQCHQNPIDSQLIRYTSQLIADIRVSPQGQDGLQAFLEKRPPSWVHQPDTEEE
>NC_019971.1|WP_015313066.1|608038_609643_-|methylcrotonyl-CoA-carboxylase-carboxyl-transferase-subunit
MAIIKSKTKPTDELFLSNQAAMEMLLEKLQKDIATIKLGGGERAIAHQRQKGKLPVRERISHLLDDGSNFLEIGQFAAWQVYDESIPCAGVVAGIGMIEGIQCMVIANDPSVKGGTYYPLTVKKHLRAQEIAQRCQLPCVYLVDSGGANLPHQSDVFPDKDHFGRIFFNQARMSAKGIPQIAVVMGLCTAGGAYVPAIADVSIMVKEQGTIFLAGPPLVKAATGEVVTGEELGGADVHCRKSGVADYCAENDEHALDLAREAIANVNRPKPPKSDSAILPPRYDAEEMYGIVNANLRLSFDVREIIARIVDDSDFDEFKALYGRTLVCGFARIHGHLIGIVANNGILFSDSSQKGAHFIELCAKRKTPLLFLQNITGFMVGKKVEEEGIAKHGAKLVMAVACADVPKFTVIIGGSYGAGNYGMCGRAYDPTMMWMWPNARISVMGGEQAAGVLTQVRKEINQRRGEEWSEQEEHTFKESIIDLYETQGHPYFASARLWDDGIIDPKETRNVLAQALMAALNAPIPDSEFGIFRM
>NC_019971.1|WP_029826404.1|609677_610847_-|isovaleryl-CoA-dehydrogenase
MKTSYIPLNFGLGETIDMLRDHVNAFANEHIAPIAADIDHYNQFPSHLWPLLGEMGLLGVTVSEEYGGAEMGYLAHVVAMEEISRASASVALSYGAHSNLCVNQIFRNGTPTQREKYLPKLVDGSHIGALAMSEVNSGSDVVSMQLKAEDKGDHFLLNGTKMWITNGPDADVVVVYARTDADAGSRGITAFIVERNFTGFSDAQKLDKLGMRGSNTSELVFNNCKVPKENILGALNCGVEVLMSGLDYERVVLAAGPLGIMQACMDIVVPYVHERKQFGKSIGKFQLVQGKLADMYSRMNAAKAYVYTVAAACDRGECTRKDAAGVILYSAELATQMALDAIQLLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRMLIGRELFEESR
>NC_019971.1|WP_015313068.1|610925_611300_-|MerR-family-DNA-binding-transcriptional-regulator
MEKYKISDLAKEFDITTRSIRFYEDVGLIEPERKGNMRVYQRRDKIRLKLILRGKRLGFSLAEIRELFELYDMQQTDEQLLKMLNIIEEKQAVLQQQLNDIGVVMGELNAAKERCLQTLKNNGK

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Crispr_ID: NC_019971_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019971_3

1402112-1402258

Unclear

Consensus_repeat	Method
GTGAACTGCCGAATAGGTAGCTGATAAT	CRISPRCasFinder

2 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NC_019971_3

>merge|NC_019971|3|1402112-1402258|CRISPRCasFinder
GTGAACTGCCGAATAGGTAGCTGATAATGAGATACCACAGGCTCAAGCAGATGCTAACAGGTGAACTGCCGAATAGGTAGCTGATAATAGTCGGTCAACTGAGAATACGTTGTTGCCAAGTGAACTGCCGCATAGGTAGAGAGAATC

>NC_019971|3|3|1402112-1402258|CRISPRCasFinder
GTGAACTGCCGAATAGGTAGCTGATAAT	GAGATACCACAGGCTCAAGCAGATGCTAACAG
GTGAACTGCCGAATAGGTAGCTGATAAT	AGTCGGTCAACTGAGAATACGTTGTTGCCAA
GTGAACTGCCGCATAGGTAGAGAGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019971.1\|WP_005499665.1\|1408327_1408813_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NC_019971.1\|WP_015313515.1\|1407562_1408186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378037
NC_019971.1\|WP_005463137.1\|1396620_1396953_-\|membrane-protein	unknown	unknown	unknown
NC_019971.1\|WP_015313514.1\|1405691_1407566_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_019971.1\|WP_015313510.1\|1393657_1394545_+\|OspB-protein	unknown	unknown	unknown
NC_019971.1\|WP_005478381.1\|1396288_1396585_-\|hypothetical-protein	unknown	unknown	unknown
NC_019971.1\|WP_005463131.1\|1402462_1402669_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019971.1\|WP_015313513.1\|1403312_1404686_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NC_019971.1\|WP_005463118.1\|1404741_1405695_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377533
NC_019971.1\|WP_025505432.1\|1401383_1401980_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187805
NC_019971.1\|WP_015313507.1\|1382071_1384660_+\|hypothetical-protein	unknown	unknown	unknown
NC_019971.1\|WP_005463135.1\|1398427_1400350_+\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NC_019971.1\|WP_005463109.1\|1409643_1410534_-\|maltose-ABC-transporter-permease-MalG	unknown	unknown	gnl\|CDD\|182891
NC_019971.1\|WP_017447309.1\|1408978_1409224_+\|hypothetical-protein	unknown	unknown	unknown
NC_019971.1\|WP_005463133.1\|1400336_1401380_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|274205
NC_019971.1\|WP_005499668.1\|1410546_1412121_-\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NC_019971.1\|WP_031791404.1\|1385559_1390053_-\|accessory-colonization-factor-AcfD	unknown	unknown	gnl\|CDD\|290061
NC_019971.1\|WP_015313512.1\|1397239_1398427_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_019971.1\|WP_005463122.1\|1402917_1403313_+\|hypothetical-protein	unknown	unknown	unknown
NC_019971.1\|WP_005463145.1\|1391389_1391959_+\|thermostable-direct-hemolysin-TDH	unknown	unknown	gnl\|CDD\|281357

Protein	Function_ID	Function_description	E-value
NC_019971.1\|WP_005499665.1\|1408327_1408813_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	9.86869e-59
NC_019971.1\|WP_015313515.1\|1407562_1408186_-\|hypothetical-protein	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	2.86686e-15
NC_019971.1\|WP_031791404.1\|1385559_1390053_-\|accessory-colonization-factor-AcfD	gnl\|CDD\|290061	pfam13322, DUF4092, Domain of unknown function (DUF4092). This family is found in Proteobacteria. The function is not known.	2.44118e-108
NC_019971.1\|WP_015313514.1\|1405691_1407566_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.32712e-09
NC_019971.1\|WP_005463131.1\|1402462_1402669_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.30141e-13
NC_019971.1\|WP_005463118.1\|1404741_1405695_-\|AAA-family-ATPase	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	2.32085e-22
NC_019971.1\|WP_015313513.1\|1403312_1404686_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.1109e-27
NC_019971.1\|WP_025505432.1\|1401383_1401980_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187805	cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.21771e-81
NC_019971.1\|WP_005463135.1\|1398427_1400350_+\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	6.35748e-72
NC_019971.1\|WP_005463109.1\|1409643_1410534_-\|maltose-ABC-transporter-permease-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	0
NC_019971.1\|WP_005463133.1\|1400336_1401380_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|274205	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	5.00604e-178
NC_019971.1\|WP_005499668.1\|1410546_1412121_-\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0
NC_019971.1\|WP_015313512.1\|1397239_1398427_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	3.32904e-20
NC_019971.1\|WP_005463145.1\|1391389_1391959_+\|thermostable-direct-hemolysin-TDH	gnl\|CDD\|281357	pfam03347, TDH, Vibrio thermostable direct hemolysin.	1.20417e-108

>NC_019971.1|WP_025505432.1|1401383_1401980_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDWHYRTITFLPEYRNNEAIAAKCIKELHRFNYKYETRSIGVSFPLWGQETVGRKITFVSTNKMELDFLISRRYFVQMTKLGYFSISTTQTVPDDCSYVLFKRAHSIDKGTSAGRARELKRLERRALERGEIFDPIAYSKTTSHAFQSYHSLEEDSSSGNKFRLNIQMKERSGTVGTGKFSSYGLGNTDNSLQVVPLI
>NC_019971.1|WP_005463133.1|1400336_1401380_+|type-I-F-CRISPR-associated-protein-Csy3
MKLPNGLSYMKSIEASDVIFLVNWPDGRKTPLPYTSRVALGMKEGSKSAYKDDGQIDADVTAYSLAQGNPHEIDFCCVPYGAESIECEFSVSFASSLRKPFKCSDPEVKRTLVQLIKLYEEKVGWEELANRFLENICNGRWLWRNNECTYSTSIGIKPWPWEDEKAISPFHDIRKNYAGTNHFRDHKDWDNLIKLITDAFSQPNGLCIFEVSATFRLGTNAPIYPSQVFKDSVKGEKNRIYQSTDVDGESSPILGCYKTGAAIATIDDWYPDADKPIRISHYGAHREDVYCYRHPNTGKDLFTLLEKADQYLEQLQATDVLPDEMINDLHFIVANLIKGGLLQQKGT
>NC_019971.1|WP_005463135.1|1398427_1400350_+|hypothetical-protein
MATLAEILDNKTDDLNKDLRRAFRPLSAPVDISDTPIEALTILVNLTDRVIEQKNLLDRQKCKDKLRDEKWWANCFRTVKYRQSHNPKFPDIRANGVIRAAPVGHLPACMLSSSKLPKNSWAYANDSSQMNKSCFLTSEFIWNGDVHCLGQLLTELEHPLWNVLRKLGCYVKTAKYISKELALIPPLEINTSLVRNYLAQISLPNGEDSYISLSPVVSQSMQEDCYQVLSEHYRFSAITRFSRATNMGTLAMSCGGKFKMIRSLPPIEKYQHHHLDSVNWLTKRSVRAIRDYTESSVWVISPNKLALRKKSIIGDIKMMLSQWLRTTPTHEEKLDIRKLTERFNVDLAKTKFANRYAYDPLLTQLIYNCIGSIIHSSPQYAPKCEGNDDKYLLLPNLRISGASAMNTSVSIGIPSMMAFYGFVHAFQRNVQTANPNFKIESFAVCIHNIHVENRGLTREWVPNTKGQITAPATRDDWQCDVAVSLILRCSHYSQLIPRDFIRLLPGRIARGKVTVSISDIKHLGRCLSLADAIKAIPVETGRWLSLNNEVTLNSIQDVIDELKNNKLQTVNCIGYHRLETPCEKRGSLHGYKHAFVETILGIIKFLTISENTNPSQYFWQYHYSKQGPILLPRSVSDETS
>NC_019971.1|WP_015313512.1|1397239_1398427_+|TniQ-family-protein
MLLQRPKSYPDESLESFFIRVANKNGYNDVHWFLVAVKRYLLDIDPRKFQTFPTDICCINPYSSKKHSISRTHALHHLSQLTFNEPVDLLGIALNRNQMQFSPSTTALIRGAEVIPRSLLRKGAIPCCPCCLGEHGYASYRWHFSGYEYCHEHNVKLIERCSCGAIYDYRYAGLSGVCTECGENISASQENHEPKATRIASWLAGDDVKPLPDVPLSYRWGFMHWWSQISSSCKTRNNGEFLAFWEHWPNSFHKLIGKEIDFNFEYCVLSKNDLRVKDILGKILFSSIQLPDRNFRSNIILKEMFQYIETHLWDDNGKLANLRMNMLEICVLLNCSREQVTSMIEQGLLPPNRQLGKREILIVTEYAFYLGDVYCLWLSEFQSDEFNRSFYLSRW
>NC_019971.1|WP_005463137.1|1396620_1396953_-|membrane-protein
MLYSNQAVKGALNNERFLPRFGYMAECFALLLLIVAGEGFFKPVITLAEKGIDDVVGDVFVNYAFGGLSIFVLCWIYFDFVGNSKPLGNAPNTFIKWTISHLLLMLSLSR
>NC_019971.1|WP_005478381.1|1396288_1396585_-|hypothetical-protein
MEQYPFKYALIGCLGLATYLYCLLKIQNVIEIRTAHRFATANVSYFGITLCFLTLIIVPFVPSIVANVVWGAALFSQILIPVRTAFKVLTREAKQALD
>NC_019971.1|WP_015313510.1|1393657_1394545_+|OspB-protein
MVVCFLANLFRGVMPNFSIKPMVSMKLSNSDNYQVNAFTNSIKSIQNKKLEKVGAILVLGKDNISRDSINLLGQQVPRVLSGKTPYPVMFLNENAKNEFKSSITSLCKITSSNNCESTDEVVGKALVTAAKSQINLSMEDAKLESFRKIYITGHGSSGIPYIYSGDSKFSIKDIVDLLEKNKILDNIKDIRLTCCNSADKREIRNLSQESIELANRDSSFLENLVYGEKKSLIEKLSSEIWERGYTDVRITGYHGKGVFYNKNELPLTHLRSSTIPATETVKRKYLRVTLESDLD
>NC_019971.1|WP_005463145.1|1391389_1391959_+|thermostable-direct-hemolysin-TDH
MKHQYFAKKSFLFISMLAAFKTSAFELPSVPFPAPGSDEILFVVRDTTFNTQAPVNVKVSDFWTNRNVKRKPYEDVYGQSVFTTSGTKWLTSYMTVNINDKDYTMAAVSGYKSGHSAVFVKSDQVQLQHSYNSVANFVGEDEGSIPSKMYLDETPEYFVNVEAYESGSGNILVMCISNKESFFECKHQQ
>NC_019971.1|WP_031791404.1|1385559_1390053_-|accessory-colonization-factor-AcfD
MKKTLLSTIVVSLLFGCNYDSYHTDTVVPELPPPPEATINVGLSLDGYLKFVNSSILCNGEPAEHFTVGPSDHVSCVLKADGTPIATYYSPFDSGTDNQARITLEYLKLTDAEEYKDSSTRVQNIQTLIKTMGTIHGDELDLSLEKTSHRLIFKNYLNNQLDVEIDTFKKLLQERLSNDSQTDKQPSTHTPEVEPAVTPGASSDLSQAFVSANAEKSLEYKPKELILTTGYLVDSFGRSVNGIAYFTSKGRGLTGYKDGRLIGDGSLEFSWGDTINFGIDTFELGSTRGNKNTIKLQDLGSGNEGKNIESLVMRFSEENDQSVFVTDKVTEVFSKYPNVINEAISLSLSNEDIQLDLGNGNTEVVKGEFEKQFESGLAEDIDKELGRQKLAFGEQYREPKQIKAVDSDAQNVQRDVERLWGATQQAQREGWKPVERFHIFHDSTNFYGSTGSARAQAAVNISNKAFPVVMARNDKNYWIDFDKPQAWDENGLAYITEAPSKVKPKKVDASNATFNLPFISIGDLGKGKVMVMGNARYNSVLVCPNGFSWNGGVNDQGQCTGNTDSDDMANFFNNAFQYLTGKKAGTFSVATNIPHVYFKRGGQVLGSKASYLIDKRFAQDTQQLDSFSGLDPNDIPLVILNAYSYLGEQGGLGAYDLPMQANLDAPKLTQQDISDLIAYVEDGGSVLMMETIKGQKDSGVVSRLLDAAGIAFGIGESVARDGNGPNGGYPDRVRSQRQQGIWVLERYAAEDSSNGEGPSLPYVIKEDGSVEWKYIIENRPDDKPKLEVAKWIEINEQGDSKVQVAFIDEANFYQDGTFDNEALTVAKNRILDAFKDNSGKRAYEECTNNEYHYEVNCLEYRPGNKIPISGGLYVPNYTEMKLGEHEAKAMVKAANIGSNIEALYQHERYFRTKGKQGFRLNSVDMSRMYQNLSVWLWNDLRYSYDQEKNDELGFKRFTEFLNCYTDDKAGGNTICPESLKLELQKMDMIYAEGEYAGYMNPSYPLNYMEKPLTRLMLGRSFWDLDVKVDTRQFPGVASSSGSNGGTITLDMSNNVTAWFAGSRQATGQWAQAHVPFTVSVSGAKAPVTITVALADDLTAREKHEVGLKRPPRMTKSFIIGGNKATSETITVPYGGLIYAQGGNSESVQLTFTGTLAAPLFIDGSWKNDLDSPAPVGEVVSKSFIYTGPKANLRAENYPGGIEQFAKDLDQFASDLNDFYARDEGLDGQANRKVTGDENPNSRHHFVNDVAISIGAAHSGYPVMNSSYNLNSSNINTTPLNDWLLWHEVGHNAAEAPFVVEGATEVVNNLLALYMQDLHIGKMTRVEQDIQVAPEFVRTEHGHAWAAGGAAERLVMFAQLKEWAESEFDIRDWYQGELPSYYSEVEGVKGWNLFKLMHRLTRNESDGIFYLKSTNACRWQGLSKSDQLMVCASYAAQTDLSDFFLAWNPGARSFIYPGSSEPSYEGGVTQKGLDVVRKLGLKKPSLDPEEINTITVRK
>NC_019971.1|WP_015313507.1|1382071_1384660_+|hypothetical-protein
MSFNTSRISISTCNINKKHLPPRNNKILDIRKVSNTREIANSLRCYLQLSESKLNSEEPLIKINNDNGSVLRKDIKLVTEALESKVRTLKSRSKLNSALSNIRKIVNGSSHEIFTLDELALLALYVDKLSGLLPKGELKELTKLINLQMECSWVKMKSDQHLLKRISDLRFMQEAGAAFKNTLSVGGNIGYGFAATANSAGVKNSVTAGLNVDMVRHVFVDDDQTIFEQHSKGISLNGGADCDFTVANLGVKGQVKTEKILQKEYSSVEHFARNEHVRFPLRKMKSSFADKLSSNSVKSLHKAQRDAYNTSIRLNQLMHSVLGLNADIFCIKPANTAPNEANINVTSVDLGGKTNAGVKDLNVGLGVSANQSLTVLNIEAEGYQKFVEDLKRVSELPSEFYFRVKDEIELDSSKENLLKLLGVLESDVANYNSIVKKYDGEKLNNGANCDLKNALKAEKYAIENRWSAIGRHQFLQFAAASHAYISKLLIEANFDDMNAIKRCEALIYNPDFACSAVMLRKLTTLPKVLKLKITDNKSSFGLSVGPFSGKVEINHRDFKHCSRVRDGRYIDVIVSGQASAALSMLNINTLNKKINEILAGEGLSDIVGSVSFTPDMNGGITLLHISRWFKPNYSKNNNFPGDKGWRKQFTRTALSRNLGGNINTSGGAGIVLGANLSASESRTKISKENIGTHDLTYTIARFNHAYTNNGSKIDNNEWQRFFEQNKHSYVDIFKNMSNTDSALSKEVSFFFKELKDRATASQKEEIIKLEYNFFNSMKKLNEQPFNEEIFNEARVYFEDFLERQVSPWIDIINEKWWKPSQYKQDMTSGNKLETKILRMLNIHPRDKNNQEKNQKIPDTSRL
>NC_019971.1|WP_005463131.1|1402462_1402669_-|helix-turn-helix-transcriptional-regulator
MRDLAKKFGYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDIRELLP
>NC_019971.1|WP_005463122.1|1402917_1403313_+|hypothetical-protein
MFVSKQLNTMVKQGLLTTSGNNRNKLFHKTTLFQQVNVSSVESEINQGKAVDLVSSVPYIAELNKMRGKLNGELAMLIAEMDEYRSIMAQYPQTQEKVKKLHQESTQLSATLTGQITAISKTIDLLTSEAV
>NC_019971.1|WP_015313513.1|1403312_1404686_+|DEAD/DEAH-box-helicase-family-protein
MLRDWQRNCIKEALGKYKSGYKHFLTQATPGAGKTVMAAYLSKQLLDSNMIDLIICFSPSVNVANGFTRTFSRVLQCSFNGSLGALGTSLTYQAIQYLDEQFWETISKHRVLAIFDEIHHCSGETLSDANAWGEQIILKVQKASKYTLALTGTPWRSDSLPISLSSYSNPEGKIICDYQYTLKQAITDRVCRKPKLVLVDNEQLQYVSPEESKYYSSIQALFKEQKMSYSSIVQDTDALVHILKLSASKLLSIRASNQDAGGLIVASSVAHARQIQTILNEQLKQPSVMVSYHDPDAQKIIEQFKNGHSPWIISIGMISEGTDIPRLQVCCHLSNVRTELYFRQVLGRILRITDSNNQEAWLYTLAEENLVKFAEEIEQDIPDSCLYIKQPEDKEEEDAHSLETSSSHTVRTFSKLGNFKWNNSDTSAQVGNENSVPYGSFTLGRFRERVIEAFVGI
>NC_019971.1|WP_005463118.1|1404741_1405695_-|AAA-family-ATPase
MNHFARAPHQQVKSIFISNSQIDEILSDIEECREESDGISEPECLIVVGDSGSGKTTIIDKYLVDNPRMEANDGSIIPILFTSLPANANPVTASERLLSSMGDPLAFSHGKDPAELMKIVNDLLRECRVELIIIDEFQHMIDRKSKDVLHSTADWLKMIIIDSKIPVVLFGMPYSTEILRVNNQLRGRFESQHHLKPFRVKDTSELIRYKTFMTMLDAALPFLEESGLASEDIMKRVYIFSKGNMRLIRRLINKAAKFALLENAPCISLKHFARAAPKVSRDACKSFNPFDTDTKKLKIIEPPEDVGWENYLAAKGD
>NC_019971.1|WP_015313514.1|1405691_1407566_-|DDE-type-integrase/transposase/recombinase
MSDDSENLYAFGSFFPEKHSNTSVPKTSKGTRFGIELQESYQDLFSFDEKRRDEAIHRYNILDYLIELHGPSLTLKKISGSMKGLADKFHPNVPSAPSIYRYWTTFKKSGFVLSSLIPGVTRGNTKQRKTLELEEYIERAIKSYFSAESPTIQQAFTLLETEIDRHNECNDTQLSFEYESFRKRIVKKTDYERLLIKKGKKAADTYYKKVGQRPETTRVLQRVEADHTRLDLFVIDDARKLPLGRPWLTLLFDTHTKSVVGFYLGFEPPGYLSVSLALENAILPKYYVKELYPEVKGEWPCYGLPEHLIVDNGAEFNSKDFVTACKNLRIKVKKNPVKKPWLKGSVERYFRTINNKLLSGIPGKSFSNIFARGDYNPQKNAIITRSDLMKVIHVWLIDIYQSSPNGLENNIPNLSWADAMRSAFPPRSFNGSIDELRFNLGKHVEISLDRNGIRLKKTLRYTSSYLAQYFGKHTYDGKSIKVKIKYNPICMGNIYVLDEDKHEFFAVESVDPDYAYSVSEWLHKVCCDYARNHIRNNYRHNDVIKAWRVIYDIIDEALHLSGNGKQANVGIRQASKLERVREHAERTKSHQKPELHMSSNDDIDWDVEVNTDGWKIDSVRGTNK
>NC_019971.1|WP_015313515.1|1407562_1408186_-|hypothetical-protein
MKKRIIKNSKVKNISRFVSLKTDSVQTTESDLEFDACFHFEFASHVKSFETQPLGFEYRLNGRLRRYTPDMLCYFNDGYATYYEVKPKWVTERDEFKKKFDAQKQQAIANGYDLLVLTEDDIQTYPLLDNLKIIHRYACSDSLDNVQVRILKLFQNYGEMRISQVINASQGQSASILPALYDLIAKKILEFDWHCPISHDSLVWRVS
>NC_019971.1|WP_005499665.1|1408327_1408813_+|acyl-CoA-thioesterase
MSSGQRDITLRFLAEPGDVNFGGKVHGGAVMKWIDLAAYACSAAWSGKYCITAYAGGIRFVAPIHVGNLVEVSAKVIYTGRSSMHIAIDVQASDPKQMKNRLTTHCIVIMVAVDESGKPTDVPKWIPESDEDKALEQSAIRLMNMRKEIGEEMEAHVKYLK
>NC_019971.1|WP_017447309.1|1408978_1409224_+|hypothetical-protein
MRLKQTTLSEETLTNLKAVEYQWVRTMYVEGYNESEINHYIQTCFGGDTTFANLFRRVALQQESLYTLLQYVGCAPSSREF
>NC_019971.1|WP_005463109.1|1409643_1410534_-|maltose-ABC-transporter-permease-MalG
MAMVQGKSLKYRVWATHIAMWAFLALIIFPLLMIIAISFREGNFATGSLIPDNPTLDHWKLALGFSITNADGTVTPPPFPVMTWLWNSVKVGGISAILIVALSTTSAYAFARMKFKGKNTILKAMMIFQMFPAVLALVALYALFDKLGQYIPFLGLNTHGGLIFAYLGGIALHVWTIKGYFESIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIMVIGEVPVASLLLSDVDSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAVPITAVFLLAQRWLVGGLTAGGVKG
>NC_019971.1|WP_005499668.1|1410546_1412121_-|maltose-ABC-transporter-permease-MalF
MQSVQGTNAMTAPEASLPSSKKVFIKWSLLGTVGILNGYATILMYSRGEIAFALLTIILTALALFIFGSKKTYAHRYIYPGIAGMILFILFPLAYTIGLAFTNYSAKNQLSFDRAQSVLLDRTYQSGDSYPFTLYNTEQGHQIVVEKDGELLATPVFQLQGFSETDLDLAPITEAAGDKEPIKTIVKNRTALSSVDLHLPNGDDIRMSGLRKFAAVVPLYTLQEDGETLYNNRTQETLRPNMEVGYYQPVDENGQFVGSTVSPGFVVNIGTHNFERVWKDDGIKEPFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKGLFNQSFGEINMLLEGLFGISPAWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGPNMIGTSEPAGYTDLLVSYTYRIAFEGAGGQDFGLASAVATLIFLLVGALALINLRVTKVAQD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019971_3	3.1\|1402140\|32\|NC_019971\|CRISPRCasFinder	1402140-1402171	32	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	201007-201038	2	0.938
NC_019971_3	3.1\|1402140\|32\|NC_019971\|CRISPRCasFinder	1402140-1402171	32	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	206663-206694	2	0.938
NC_019971_3	3.1\|1402140\|32\|NC_019971\|CRISPRCasFinder	1402140-1402171	32	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	203227-203258	2	0.938
NC_019971_3	3.1\|1402140\|32\|NC_019971\|CRISPRCasFinder	1402140-1402171	32	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	184601-184632	2	0.938
NC_019971_3	3.1\|1402140\|32\|NC_019971\|CRISPRCasFinder	1402140-1402171	32	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	206028-206059	2	0.938

1. spacer 3.1|1402140|32|NC_019971|CRISPRCasFinder matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

2. spacer 3.1|1402140|32|NC_019971|CRISPRCasFinder matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

3. spacer 3.1|1402140|32|NC_019971|CRISPRCasFinder matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

4. spacer 3.1|1402140|32|NC_019971|CRISPRCasFinder matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

5. spacer 3.1|1402140|32|NC_019971|CRISPRCasFinder matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 2, identity: 0.938

gagataccacaggctcaagcagatgctaacag	CRISPR spacer
cggataccacaggctcaagcagatgctaacag	Protospacer
 .******************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

706907 : 713609

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005483011.1\|706907_708047_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7
WP_017448803.1\|708064_709315_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.1e-98	47.9
WP_005482986.1\|709442_709892_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_015296329.1\|709899_711024_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.8e-48	36.0
WP_005483039.1\|711036_711690_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	37.5
WP_005496254.1\|711859_712969_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-63	39.6
WP_005440184.1\|713138_713609_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_2

2655823 : 2672983

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015297262.1\|2655823_2658406_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9
WP_005455548.1\|2658548_2659016_-	recombination regulator RecX	NA	NA	NA	NA
WP_005478550.1\|2659139_2660183_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_015297263.1\|2660383_2660866_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.1e-26	48.1
WP_015297264.1\|2660950_2663512_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.4e-34	23.9
WP_015297265.1\|2663591_2664557_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	9.7e-35	35.8
WP_015297266.1\|2664637_2665561_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005455562.1\|2665575_2666202_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_015297267.1\|2666201_2666978_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-66	52.4
WP_015297268.1\|2666977_2668021_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005455572.1\|2668067_2668544_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_005487195.1\|2668561_2669266_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	2.6e-05	23.6
WP_005455577.1\|2669267_2669549_-	cell division protein FtsB	NA	NA	NA	NA
WP_005455579.1\|2669962_2671264_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455581.1\|2671342_2672983_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4

DBSCAN-SWA_3

2859572 : 2886412

Vibrio_phage(66.67%)

capsid,integrase,terminase,tail,portal,head,tRNA

attL 2858307:2858320|attR 2870558:2870571

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2858307:2858320	attL	NA	NA	NA	NA
WP_072847696.1\|2859572_2860583_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_015297347.1\|2860705_2861779_+\|integrase	site-specific integrase	A0A1D9C9R5	Salinivibrio_phage	1.7e-144	68.8
WP_139277581.1\|2861961_2862645_-	hypothetical protein	R9TRP4	Vibrio_phage	1.9e-48	44.8
WP_015297349.1\|2862637_2863201_-	hypothetical protein	NA	NA	NA	NA
WP_029826395.1\|2863262_2864090_-	hypothetical protein	A0A2I6PIE7	Escherichia_phage	1.4e-05	33.3
WP_015297351.1\|2864260_2864542_+	hypothetical protein	K7PGU0	Enterobacteria_phage	1.6e-14	47.7
WP_015297352.1\|2864616_2865138_+	Phage regulatory protein like CII	A0A2I7RNI1	Vibrio_phage	1.5e-61	65.3
WP_139277582.1\|2865236_2865464_+	hypothetical protein	NA	NA	NA	NA
WP_015297354.1\|2865563_2865884_+	hypothetical protein	NA	NA	NA	NA
WP_029826391.1\|2865880_2866282_+	hypothetical protein	R9TRR4	Vibrio_phage	3.8e-33	54.4
WP_144050682.1\|2866293_2866872_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	5.1e-39	47.2
WP_015297356.1\|2866868_2867321_+	DUF3850 domain-containing protein	K4NWP7	Escherichia_phage	1.6e-08	50.0
WP_029826390.1\|2867317_2867545_+	hypothetical protein	R9TPY7	Vibrio_phage	4.9e-22	64.1
WP_015297358.1\|2867541_2867766_+	hypothetical protein	NA	NA	NA	NA
WP_140372257.1\|2867939_2870459_+	replication endonuclease	A0A166YHE2	Vibrio_phage	7.8e-217	48.0
WP_015297360.1\|2870552_2871215_+	hypothetical protein	A0A0M4S5U3	Salmonella_phage	2.4e-61	50.9
2870558:2870571	attR	NA	NA	NA	NA
WP_029826476.1\|2871228_2871606_+	hypothetical protein	NA	NA	NA	NA
WP_072847701.1\|2871606_2871858_-	ogr/Delta-like zinc finger family protein	U3PB63	Vibrio_phage	1.2e-24	69.9
WP_015297361.1\|2871924_2872959_-\|portal	phage portal protein	A0A1D9C9P9	Salinivibrio_phage	8.8e-143	71.8
WP_029826475.1\|2872955_2874728_-\|terminase	terminase	A0A1D9C9R1	Salinivibrio_phage	2.4e-273	78.1
WP_029826474.1\|2874904_2875777_+\|capsid	phage capsid protein	A0A2I7RNH1	Vibrio_phage	2.4e-77	61.7
WP_015297365.1\|2875820_2876834_+\|capsid	phage major capsid protein, P2 family	A0A160DHH1	Vibrio_phage	3.2e-169	87.2
WP_015297366.1\|2876872_2877586_+\|terminase	terminase endonuclease subunit	A0A2I7RNJ0	Vibrio_phage	2.2e-92	67.2
WP_015297367.1\|2877696_2878116_+\|head	head completion/stabilization protein	A0A2I7RNH7	Vibrio_phage	1.0e-49	71.2
WP_015297368.1\|2878112_2878604_+\|tail	phage tail protein	A0A2I7RNH2	Vibrio_phage	6.8e-77	84.9
WP_029826594.1\|2878587_2879244_+	virion morphogenesis protein	A0A2I7RNI6	Vibrio_phage	8.2e-94	77.1
WP_015297370.1\|2879247_2880378_+	DUF2586 family protein	A0A2I7RNI8	Vibrio_phage	2.4e-173	80.5
WP_015297371.1\|2880381_2880837_+	DUF2597 family protein	A0A2I7RNI0	Vibrio_phage	3.8e-74	88.7
WP_029826593.1\|2880849_2881068_+	molecular chaperone DnaK	R9TMS3	Vibrio_phage	5.1e-08	46.8
WP_029826592.1\|2881100_2881490_+	DUF882 domain-containing protein	A0A1D9C9S9	Salinivibrio_phage	9.3e-45	65.4
WP_015297373.1\|2881492_2881723_+	hypothetical protein	NA	NA	NA	NA
WP_015297374.1\|2881725_2881962_+	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	4.2e-08	39.5
WP_015297375.1\|2881958_2882231_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.4e-15	48.8
WP_015297377.1\|2882424_2884314_+\|tail	phage tail tape measure protein	A0A2I7RNI7	Vibrio_phage	9.8e-257	73.7
WP_086028825.1\|2884310_2884643_+	DUF2590 family protein	A0A2I7RNH9	Vibrio_phage	2.7e-45	87.9
WP_015297379.1\|2884635_2885823_+	bacteriophage protein	A0A2I7RNJ7	Vibrio_phage	3.5e-183	78.2
WP_015297380.1\|2885809_2886412_+	Hemolysins-related proteins containing CBS domains	A0A2I7RNJ4	Vibrio_phage	1.2e-99	82.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019971

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_019955

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection