CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_019966	Mycobacterium sp. JS623, complete genome	3 crisprs	csa3,WYL,cas3,c2c9_V-U4,RT,cas4,DEDDh,Cas14u_CAS-V,DinG	1	2	1
NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	0 crisprs	NA	0	0	0
NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	1 crisprs	DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csf3gr5,csf2gr7,csf4gr11,csf1gr8	0	16	0
NC_019959	Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence	1 crisprs	DEDDh,c2c9_V-U4,csf3gr5,csf2gr7,csf4gr11,csf1gr8	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019966_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019966_1

570915-570979

Orphan

Consensus_repeat	Method
AAGAAGGCTCCGGCCAAGAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019966_1

>merge|NC_019966|1|570915-570979|CRISPRCasFinder
AAGAAGGCTCCGGCCAAGAAGGCCCCGGCCAAGGCCCCGGCCAAGAAGGCTCCCGCCAAGAAGGC

>NC_019966|1|1|570915-570979|CRISPRCasFinder
AAGAAGGCTCCGGCCAAGAAGGC	CCCGGCCAAGGCCCCGGCC
AAGAAGGCTCCCGCCAAGAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019966.1\|WP_015304573.1\|571377_571815_+\|DUF2599-domain-containing-protein	unknown	unknown	gnl\|CDD\|378494
NC_019966.1\|WP_015304563.1\|562469_563288_+\|acyl-[acyl-carrier-protein]-thioesterase	unknown	unknown	gnl\|CDD\|226401
NC_019966.1\|WP_015304580.1\|576151_577198_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237552
NC_019966.1\|WP_015304566.1\|565874_566720_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NC_019966.1\|WP_015304567.1\|566816_567686_-\|polyphosphate-kinase-2-family-protein	unknown	unknown	gnl\|CDD\|274737
NC_019966.1\|WP_015304575.1\|572489_573380_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NC_019966.1\|WP_015304576.1\|573376_574201_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143605
NC_019966.1\|WP_015304562.1\|560935_562363_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226322
NC_019966.1\|WP_015304570.1\|569932_570391_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019966.1\|WP_015304565.1\|565026_565887_+\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|181133
NC_019966.1\|WP_015304579.1\|575615_576125_-\|DUF2505-domain-containing-protein	unknown	unknown	gnl\|CDD\|378476
NC_019966.1\|WP_015304569.1\|568491_569823_+\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|225347
NC_019966.1\|WP_015304581.1\|577213_578503_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|380079
NC_019966.1\|WP_083906226.1\|574206_575103_-\|SAM-dependent-methyltransferase	unknown	unknown	unknown
NC_019966.1\|WP_015304568.1\|567678_568389_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_019966.1\|WP_015304572.1\|571093_571375_+\|DUF2516-family-protein	unknown	unknown	gnl\|CDD\|378483
NC_019966.1\|WP_015304574.1\|571815_572493_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NC_019966.1\|WP_051073693.1\|575077_575593_-\|DUF2505-domain-containing-protein	unknown	unknown	gnl\|CDD\|378476
NC_019966.1\|WP_015304561.1\|560357_560939_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NC_019966.1\|WP_015304564.1\|563551_564838_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893

Protein	Function_ID	Function_description	E-value
NC_019966.1\|WP_015304573.1\|571377_571815_+\|DUF2599-domain-containing-protein	gnl\|CDD\|378494	pfam10783, DUF2599, Protein of unknown function (DUF2599). This family is conserved in Actinobacteria. The function is not known.	8.817e-43
NC_019966.1\|WP_015304563.1\|562469_563288_+\|acyl-[acyl-carrier-protein]-thioesterase	gnl\|CDD\|226401	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].	3.23673e-101
NC_019966.1\|WP_015304580.1\|576151_577198_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237552	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase.	0
NC_019966.1\|WP_015304566.1\|565874_566720_-\|DUF559-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	1.12445e-07
NC_019966.1\|WP_015304567.1\|566816_567686_-\|polyphosphate-kinase-2-family-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	3.07533e-144
NC_019966.1\|WP_015304575.1\|572489_573380_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	4.40532e-11
NC_019966.1\|WP_015304576.1\|573376_574201_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	3.35888e-106
NC_019966.1\|WP_015304562.1\|560935_562363_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	3.99408e-175
NC_019966.1\|WP_015304570.1\|569932_570391_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.76993e-14
NC_019966.1\|WP_015304565.1\|565026_565887_+\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|181133	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	0
NC_019966.1\|WP_015304579.1\|575615_576125_-\|DUF2505-domain-containing-protein	gnl\|CDD\|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	9.78588e-60
NC_019966.1\|WP_015304569.1\|568491_569823_+\|DUF445-domain-containing-protein	gnl\|CDD\|225347	COG2733, COG2733, Predicted membrane protein [Function unknown].	1.79132e-173
NC_019966.1\|WP_015304581.1\|577213_578503_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	1.42879e-81
NC_019966.1\|WP_015304568.1\|567678_568389_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.73551e-13
NC_019966.1\|WP_015304572.1\|571093_571375_+\|DUF2516-family-protein	gnl\|CDD\|378483	pfam10724, DUF2516, Protein of unknown function (DUF2516). This family is conserved in Actinobacteria. The function is not known.	2.65309e-21
NC_019966.1\|WP_015304574.1\|571815_572493_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	2.13513e-97
NC_019966.1\|WP_051073693.1\|575077_575593_-\|DUF2505-domain-containing-protein	gnl\|CDD\|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	1.89082e-51
NC_019966.1\|WP_015304561.1\|560357_560939_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	5.53372e-19
NC_019966.1\|WP_015304564.1\|563551_564838_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0

>NC_019966.1|WP_015304570.1|569932_570391_+|helix-turn-helix-transcriptional-regulator
MPQDENLAAVVSNAAQTAAQDIGSFIRTQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLQQIAKALRVSAEVLYVRAGILEPSETSEVRDAIITDTAITERQKQVLLDIYTSFCQQNEAVSEEPTTEATADLPKALEIQQFNESQ
>NC_019966.1|WP_015304569.1|568491_569823_+|DUF445-domain-containing-protein
MAHRPDVGRRPVAPATRASFAESLAGADSVADAERRRGLRRMKLVALSFLVGATVIFLVCTWAQSNGAASWVGYVRAAAEAGMVGALADWFAVTALFKHPLGIPIPHTAIIKRKKDQLGEGLGAFVRENFMSPQVIEAKLRDAQVAGRLGKWLSEPSHAQRVAAETSTVLRVLVEMLRDEDVQHVLDRMIVKRVAEPQWGPPIGRVLATLLAERRQEALLQLLADRAFQWSLNAGDIIERVVERDSPTWSPRWVDHLVGDRIHRELMDFTDKVRRNPDHELRRSATRFLFEFADDLQHDDATIQRAENVKEQLMARDEVARAAETAWAAAKRIILESVDDPSSALRTRIADSVVHIGESLRDDADLRDKVDNWIIRAAQHLVSEYGVEITAIITETIERWDADEASRRIELHVGRDLQFIRINGTVVGSLAGLIIYSIAQLLF
>NC_019966.1|WP_015304568.1|567678_568389_-|TetR/AcrR-family-transcriptional-regulator
MAQQTSPVAVKTDGRKRRWHKHKVERRNELVDGTLEAIRRRGSNVSMDEIAAEIGVSKTVLYRYFVDKNDLTTAVMMRFAQTTLIPNMTAALTSNLDGFDLTREIIRVYVETVASEPEPYQFVMANNSASKSKAVAASESIIARMLAVMLRRRMVEVGMDTGGVESWAYHTVGGVQLATHSWMNDRRISADDLIDYLTMLSWNALCGIVEVGGSLEKFREGPHPSPGLPPQLLADD
>NC_019966.1|WP_015304567.1|566816_567686_-|polyphosphate-kinase-2-family-protein
MTKPGDLPEPWTHEPHKHLAYRQGNKVADIDTSATPGFKGKKADAADLQPDRNKRFAELQEMLFARSKGGDDQRSLLLVLQGMDTAGKGGVVKHVVGAANPQGIRYHAFGKPTDEELKHHYLWRIRRALPPPGHIGVFDRSHYEDVLIVRVHNLVPPEVWGNRYEEINRFERKLVAAGTTIIKVAMFVSLDEQKARLAARLNRPDKYWKYNPSDLDERRLWPAYQEAYQAMLERTSTDVAPWHVVPCDRKWYSRLAILELLIEALEGLDLSWPAPDFDVEAEKKRLAKA
>NC_019966.1|WP_015304566.1|565874_566720_-|DUF559-domain-containing-protein
MDDILVGSEALASGQVTRHMLRTKYIKLHYNVYVRAGLKPDAVVRARAAWLWSRRTATVVGHSAAALHGTLWLPDDAPAELAHSNQPSPPGIVIHRGLIADDEMCLRQSIDCTTPARTAYDIGRRVEGDTAIIRIDALLNATRCTVAEVNRIATRYPGARGLRQLRETLDLADGGAESPQETRLRLLLVRDGLPRPVTQILVPNPRGRPRRVDMGWPEWKVGVEYDGEQHWTNPDIYAEDIERLEFLATQGWIIIRVSSRQMRYRRQEILTRVRRALAQYL
>NC_019966.1|WP_015304565.1|565026_565887_+|3-hydroxybutyryl-CoA-dehydrogenase
MSDAIERVGVIGAGQMGGGIAEVSARAGVDVLVFEPTEELTAAGKARITKSLERGVSTGKITERERDQALAKLKFTTELKDLADRQLVIEAVIEDETVKGKIFAELDEIIADPDAVLASNTSSIPIMKIAAATKNPVRVLGLHFFNPVPVLPLVELINTLVTSDAAITRTEKFASDVLGKQVVRCSDRSGFVVNALLVPYLLSAIRMVESGVATVDDIDKAIVAGLSHPMGPLRLSDLIGLDTMKLIADSMYEELKDPHYAPPPLLLRMVEAGQLGKKSGQGFYKY
>NC_019966.1|WP_015304564.1|563551_564838_+|isocitrate-lyase
MSTVGQPKSAEEIQKDWDTNPRWKGITRTYTPADVVALQGSVVEEATLARRGAEVLWNQLHDMEFVNSLGALTGNMAVQQVRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALMRADQIAKVEGDTSVENWLAPIVADGEAGFGGALNVYELQKAMIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADAPTLVIARTDAEAATLITSDVDERDRPFITGERTAEGFYRVRNGLEPCIARAKAYAPYSDLIWMETGTPDLELAAKFAEGVKSEFPDQMLAYNCSPSFNWRKHLDDATIAKFQKELGAMGFKFQFITLAGFHALNYSMFDLAYGYARNQMSAYVELQEREFDAEERGYTATKHQREVGAGYFDRIATTVDPNSSTTALSGSTEEGQFH
>NC_019966.1|WP_015304563.1|562469_563288_+|acyl-[acyl-carrier-protein]-thioesterase
MAEIAGSTGLAKVMMPVPDPHPDVFDRQWPLRVADIDREGRLRFDAATRHIQDIGSDQLREMGFEETHPLWIVRRTMIDMIRPIEFQDMLRMRRWCSGTSNRWCEMRVRIDGKRSGGLIESEAFWININRETQGPARISDDFIEGLQRTTTVDRLRWKPYLKAGSREDAAQIREYPVRVSDIDIFDHMNNSVYWSVIEDYLFNTPELLHKPIRVTIEHDAAVALGEKLEIISHVHPPGSTERFGAELADRTVRTLTYAVGDETKAVAAIFEL
>NC_019966.1|WP_015304562.1|560935_562363_-|helix-turn-helix-domain-containing-protein
MAKTFVGSRVRQLRSERGFSQAALAQMLDISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFFASQDDTRLVAELREVTMDRDLDIDVDLAEVADMVGSHPALARAMVNLHRRYRLTTTQLAAATEDRYSDGSGSSSGSGAITMPHEEVRDYFYQRQNYLHELDTAAEDLTIRMRMHRAELARELADRLTRVHGVHIIRRIDLGDTVLHRFDPATKTLEISGHLSSGQTVFKMAAELAYLEFGDLIDKLVEEGKFTSEESTTLARLGLANYFAAATVLPYGQFHDVAENFRYDIERLSAFYSVSYETIAHRLSTLQRPSMRGVPLSFIRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFANPGKILVQIAQMPDGRSYMWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVYSEGLDLSADNATPIGAGCRVCERDNCPQRAFPALGRALDLNEHRSTVSPYLVQQS
>NC_019966.1|WP_015304561.1|560357_560939_-|carboxymuconolactone-decarboxylase-family-protein
MSASPGGRSEATGGINPARIPPGGFRELGPVNWAIAKLGARGIRAPKFHLFNVLGQHRLLFLAWLPFSGYLLYAGKLSRKDTELVILRVGHLRDCEYELQQHRRLAKSRGVGSELQARIFEGPDAEGLSERERVLITATDEFVITRSMSPETWAALSSILSRPQLIEFCTLAGQYDALAATMATLKIPLDFPD
>NC_019966.1|WP_015304572.1|571093_571375_+|DUF2516-family-protein
MELQGLVGYVLAVLQIAVLVTTVYAFVHAALQRPDAYTAAEKLTKPVWLVILGVGVLLALVLGITGVAIAAVAAGVYLVDVRPKILEIQGKSR
>NC_019966.1|WP_015304573.1|571377_571815_+|DUF2599-domain-containing-protein
MRLRLAAAAAAATLPLVLAPVASLVALAPPAEADPVPGPPYVDHVQWAKWADLSSLRVYPTEAARQASLQPGTDPQADEAWAEVLTLSPDADMPGMKAQFLCHWHFAEFAEPGKVSWNLEPWRNLVSDQQMVAAGCNPGGTEEPF
>NC_019966.1|WP_015304574.1|571815_572493_+|deoxyribose-phosphate-aldolase
MRYSRSSVAALVDHTLLKPEATEADVVALLQEAEELGVFAVCVSPTMVATAKSFRTGEYVIASVVGFPSGKHLSAIKAEEAKLAVAAGASEIDMVIDVGSALEGDFDAVRSDIATVFAAMPSDTVLKVIVESAALIALGGEQRLVDVCKIAEDAGADFVKTSTGFHPSGGASVRAVELMAKTVGDRLGVKASGGIRTADDAVAMLNAGATRLGLSGTRVVLDGLA
>NC_019966.1|WP_015304575.1|572489_573380_-|DUF2993-domain-containing-protein
MTDPWARPANQVPPVPPRPPQFPPGASAGQPAQPAAPQAPPPQKDSSLLGKAKDLFRDPLSIVLAVVIVVALVAAGLLAGELYARSRADDVIAAAAQCVVQDSASVSFDALPPFLWQHMTGHYTNIHFETAGNQIRQAKGMKVNVAIKDVRLGDTANSGGTIGSLVANVTWSTQGIKDTIQNAIPLVGSFVTGVTTNPSAGTVELQGALGSITTKPTVANDGISLPVTELTGLGFTLPRETVQPALDAFTDQFTKGYPLGIHATAVQVTETGVVAQFSTQNASMPKGNQDPCFAGL
>NC_019966.1|WP_015304576.1|573376_574201_-|carbon-nitrogen-hydrolase-family-protein
MRIALAQIQAGAEPTANLGLVEDYTRRAADAGARLVLFPEATMCRFGVPLAPIAEPLHGSWASAVRAIAERAGVVVVTGMFVPAEEDRTGRVTNTLLATGPGVDTHYDKIHLYDAFGFAESDTVAPGREPVMITVDGVNVGLTLCYDVRFPELYVELASRGAQLITVHASWGTGPGKLEQWQLLARARAIDTTGLVAAVDQAYPGDELAAAGPVGVGGSLVASATGEVLASAGADPQLLVTDLDLDAAQKTRETIAVLRNRTEFTRLGKAESLR
>NC_019966.1|WP_083906226.1|574206_575103_-|SAM-dependent-methyltransferase
MTGFPSTTRGASNVAGRAGPVGAITRGTTGHNRLRRSDRWLVHSRRVRAALQAAADPLVIDLGYGALPVTTLELAARLRVVRADVRVVGLEIHPERVVSAARAAENSTVEFGLGGFELAGHAPVLVRAFNVLRQYPVEAVPGAWATMQARLAPGGLIVDGTCDELGRRCCWVLLDAEGPISLTLACDPFAIERPSDLAERLPKVLIHHNLAGQPIHSLLTAADHAWASVAGHGVFGPRVRWRAMLDLLRDEGFPVEPPRRRMRDGVLSVPWSNVAPVGAPKSNVAPVGAPGSNVPPVG
>NC_019966.1|WP_051073693.1|575077_575593_-|DUF2505-domain-containing-protein
MSRRMDYTIEFDAPAEKIYQDFTSREYWQTLMEAYRFLTPQSEIKTFSTTERGPDIVFVQDLPRMYLPPIARTVVPIDMIITRKQHFDRYDHDKNRAQGAYSASIPHGPGSFDGQYFLTETDAGSKLRLVSVCKVYIPFVGGALEDLILHHIKQLFDAEEAFTADWISKHH
>NC_019966.1|WP_015304579.1|575615_576125_-|DUF2505-domain-containing-protein
MPRSFDMATEYGASVEQVHQAFSDEQYWLSRLADSGADDYSLDSLTVDGNGIDVVTTQRLRADRLPAVVTQFHRGDLALVREENWSPISDGRATATIQLAIIGAPATLSGSAVLAPAKSGDSSRLDFTATVQVNVPLVGGKIENFIGSQLMDLLIQEQRFTTVWITENA
>NC_019966.1|WP_015304580.1|576151_577198_+|UDP-N-acetylmuramate-dehydrogenase
MTGLELGGAVVADDVPLAPLTTLRIGGVARRLITCATTEQIVAALRALDDVLVLAGGSNVVLADDLADLTVVLLANTEITVEDNVVRAEAGAVWDDVVVTSLAHGLGGLECLSGIPGSAGATPVQNVGAYGAEVADTIRRLRLLDRRTGEDHWVTPDVLQFGYRTSILKHSQDAVVLEVEFELDSDGRSAPIRYGELAAALDAEPGSTADPGRVREAVLSLRAGKGMVLDDADHDTWSVGSFFTNPVVSAAEFDRLNDSVDGPVPNYPAPDGVKLAAGWLVERAGFGKGYPGEDAPARLSTKHALAVTNRGNATAADVIALARAVRDGVRKAFGIDLTPEPILVEAAL
>NC_019966.1|WP_015304581.1|577213_578503_+|L,D-transpeptidase-family-protein
MSPANPVPSVSRRKALTALAVGLVVPGALAACGSRVGKPSAEAPSAPAAPSISYQPANKSTDVVPVAPVRVDVKDGWFQKVTLTNADGKVVAGALNRDRTSFTTTEPLGYGASYSWAGSVVGHDGKAVPVQGNFTTIKPTKQVNGAFQLADGQTVGVAAPVIIQFDASISDKASVEKALKVTTEPPVEGSWAWLPDEVGGSRVHYRTRDYYPAGTKVSVVAKLYGVPFGDGAFGAQDISLNFEIGRRQVVKAEASSHRIQVLDGSGAVIMDFPCSYGEADLPRNITRSGIHVVTEKYEDFYMSNPAAGYSNVHERFAVRISNNGEFIHCNPNSIGAQGNTNVTNGCINLNLENSQEYFNSAIYGDPVEVSGTSIELSYADGDLWDWAVSWDEWVAMSALSPQGRPSEIPSTAPATPSDAPQPVNGRPGG

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Crispr_ID: NC_019966_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019966_2

4132892-4132977

Orphan

Consensus_repeat	Method
CGCTGCCGAGGATGCTGCCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019966_2

>merge|NC_019966|2|4132892-4132977|CRISPRCasFinder
CGCCGCCGAGCACGCTGCCGAGGATGCTGCCCAGCGGATTGTTTCCGCCGCCACCGCCACCCGCGCCGCCGAGGATGCTGCCCAGC

>NC_019966|2|2|4132892-4132977|CRISPRCasFinder
CGCCGCCGAGCACGCTGCCGAGG	ATGCTGCCCAGCGGATTGTTTCCGCCGCCACCGCCACCCG
CGCCGCCGAGGATGCTGCCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019966.1\|WP_015308050.1\|4141635_4142712_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NC_019966.1\|WP_015308044.1\|4137260_4137791_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_019966.1\|WP_015308047.1\|4138949_4139435_-\|transglycosylase-family-protein	unknown	unknown	gnl\|CDD\|369056
NC_019966.1\|WP_015308043.1\|4136859_4137264_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_019966.1\|WP_041312469.1\|4127741_4128152_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_019966.1\|WP_015308032.1\|4122345_4123785_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237045
NC_019966.1\|WP_015308045.1\|4137810_4138317_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235874
NC_019966.1\|WP_015308039.1\|4130069_4132721_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_019966.1\|WP_015308035.1\|4124624_4127435_-\|ribonuclease-E/G	unknown	unknown	gnl\|CDD\|273254
NC_019966.1\|WP_015308033.1\|4123873_4124140_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NC_019966.1\|WP_015308030.1\|4120373_4121210_+\|NAD-dependent-protein-deacetylase	unknown	unknown	gnl\|CDD\|238700
NC_019966.1\|WP_015308046.1\|4138390_4138978_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380093
NC_019966.1\|WP_015308031.1\|4121248_4122349_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NC_019966.1\|WP_015308038.1\|4128639_4130073_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NC_019966.1\|WP_015308048.1\|4139647_4139974_-\|transglycosylase-family-protein	unknown	unknown	gnl\|CDD\|369056
NC_019966.1\|WP_015308041.1\|4133494_4134781_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225807
NC_019966.1\|WP_015308042.1\|4134791_4136762_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_019966.1\|WP_015308037.1\|4128253_4128643_-\|DUF4233-domain-containing-protein	unknown	unknown	gnl\|CDD\|379420
NC_019966.1\|WP_083906314.1\|4141034_4141739_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234798
NC_019966.1\|WP_015308034.1\|4124151_4124463_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510

Protein	Function_ID	Function_description	E-value
NC_019966.1\|WP_015308050.1\|4141635_4142712_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	7.09014e-172
NC_019966.1\|WP_015308044.1\|4137260_4137791_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.85752e-33
NC_019966.1\|WP_015308047.1\|4138949_4139435_-\|transglycosylase-family-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	1.89274e-33
NC_019966.1\|WP_015308043.1\|4136859_4137264_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.41778e-28
NC_019966.1\|WP_041312469.1\|4127741_4128152_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.2441e-80
NC_019966.1\|WP_015308032.1\|4122345_4123785_-\|GTPase-ObgE	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NC_019966.1\|WP_015308045.1\|4137810_4138317_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|235874	PRK06847, PRK06847, hypothetical protein; Provisional.	1.76665e-20
NC_019966.1\|WP_015308039.1\|4130069_4132721_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_019966.1\|WP_015308035.1\|4124624_4127435_-\|ribonuclease-E/G	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	0
NC_019966.1\|WP_015308033.1\|4123873_4124140_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	6.08138e-49
NC_019966.1\|WP_015308030.1\|4120373_4121210_+\|NAD-dependent-protein-deacetylase	gnl\|CDD\|238700	cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.	1.05028e-130
NC_019966.1\|WP_015308046.1\|4138390_4138978_+\|hypothetical-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	9.54609e-14
NC_019966.1\|WP_015308031.1\|4121248_4122349_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	1.14353e-172
NC_019966.1\|WP_015308038.1\|4128639_4130073_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.10786e-148
NC_019966.1\|WP_015308048.1\|4139647_4139974_-\|transglycosylase-family-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	5.01411e-32
NC_019966.1\|WP_015308041.1\|4133494_4134781_-\|hypothetical-protein	gnl\|CDD\|225807	COG3268, COG3268, Uncharacterized conserved protein [Function unknown].	6.2676e-141
NC_019966.1\|WP_015308042.1\|4134791_4136762_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	5.37135e-66
NC_019966.1\|WP_015308037.1\|4128253_4128643_-\|DUF4233-domain-containing-protein	gnl\|CDD\|379420	pfam14017, DUF4233, Protein of unknown function (DUF4233). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 147 amino acids in length. Proteins in this family are integral membrane proteins.	5.83535e-29
NC_019966.1\|WP_083906314.1\|4141034_4141739_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234798	PRK00576, PRK00576, molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional.	1.53048e-90
NC_019966.1\|WP_015308034.1\|4124151_4124463_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	7.0327e-42

>NC_019966.1|WP_015308039.1|4130069_4132721_-|valine--tRNA-ligase
MTASPENSADALPKSWEPGSVESDLYEGWVKAGYFKADPASSKPAYSIALPPPNVTGSLHMGHALDHTLMDALTRRKRMQGFEVLWLPGMDHAGIATQTVVEKQLAVDGKTKEDFGRELFIEKVWDWKRESGGTIAGQMRRLGDGVDWSRDRFTMDEGLSRAVRTIFKRLFDAGLIYRAERLVNWSPVLQTAVSDLEVKYEEVEGELVSFRYGSLDDSEPHIVVATTRVETMLGDTAIAVHPDDDRYRHLVGTSLPHPFLDRQITIVADDHVDPEFGTGAVKVTPAHDPNDFEIGLRHQLPMPSMLDTKGRITDTGTEFDGLDRFEARVKVREALAEQGRIVEEKRPYLHSVGHSERSGEVIEPRLSMQWWVKVESLAKAAGDAVRDGDTVIHPPSLEPRWFAWVDNMHDWCISRQLWWGHRIPIWHGPDGETVCVGPDETPPEGWEQDPDVLDTWFSSALWPFSTLGWPEHTDDLAKFYPTTVLVTGYDILFFWVARMMMFGTYVADDPAITVNGKRGPQVPFENVFLHGLIRDEFGRKMSKSRGNGIDPLDWVEQFGADALRFTLARGASPGGDLTIGEDHARASRNFATKLFNATRFALMNGAAPAPLPEASELTDADRWILGRLEEVRTEVDSAFDSYEFSRACESLYHFAWDEFCDWYVELAKVQLAEGVQHTTAVLAAVLDTLLKLLHPVMPFVTEVLWRTLTGGESIVIADWPQPSGFAVDPVATQRIVDMQKLITEIRRFRSDQGLNDRQRVPARLSDTENADLVAQIPAVRALAWLTESDESFSPSAHVEVRLTRGTVVVTVDTSGTVDVAAERRRLEKDLAAAEKELAGTAGKLGNDAFLAKAPADVVEKIRARQQLAREEVDRISARLATLT
>NC_019966.1|WP_015308038.1|4128639_4130073_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MTDPEPLGRPHPDDVPTPDEIASLLQVEHLLDQRWPETKLEPSTARISALLEMLGSPQLGYPSIHIAGTNGKTSVARMVDALLTAFSRRTGRTTSPHLQSAVERISIDGRPISPAQYVATYQEIEPFVQLVDQQSEAAGGPAMSKFEVVTGMAFAAFADAPVDVAVIEVGLGGRWDATNVVNAPVAVITPIGVDHADYLGDTIAEIAGEKAGIITRQDDDLMPTDTVAIIGRQLPEAMEVLLAQAVRVDAAVAREDSEFAVLGRQVAVGGQLLELQGLGGVYSDVFIPLHGEHQAHNAVVALAAVEAFFGAGADRQLDIETVRAGFASATSPGRLERLRTAPTVFIDAAHNPAGATALAQALQEEFDFRYLVGVVSVMADKDVDGILTALEPAFDQIVVTHNGSPRALDVEALALRAEERFGPERVVTATTLPDAIETATALVESNDDRGFSGAGVVITGSVVTAGAARTLFGKDPE
>NC_019966.1|WP_015308037.1|4128253_4128643_-|DUF4233-domain-containing-protein
MTEQPQAPDPWKSFRGVMAGTLILEAIVVLLALPVVAAADHGLTPFTAGYLIGFAIVLVLLAGIQGRPWAIWVNVAVQVVLIAGWLVNGAVGFVGLIFAAVWLFIAYLRAEVLRRQKRGLLPGQQRPPN
>NC_019966.1|WP_041312469.1|4127741_4128152_-|nucleoside-diphosphate-kinase
MTERTLVLIKPDGVQRRLIGEILGRIEGKGLSVAALELKNVSDDLARRHYAEHEDKPFFGSLLEFITSGPVVAAIVEGPRAVAAFRQIAGGTDPVEKAAPGTIRGDLALITQDNLVHGSDSPESAAREIELWFPGL
>NC_019966.1|WP_015308035.1|4124624_4127435_-|ribonuclease-E/G
MAEDAPNQDLSEETQPSGDQPQELTDSQAEHPAEDAPSDEVSGASHDSANSEESGDAEESEDSAEAEPESRLILETAPEAERADYLPLFMAPQPVQASYDPDADDDEDDEDDDGGPDSDDDQGDRPAARRRRRGRRGRGRGRGEQSDDSDDNESGDGQADAKRDDDSNDDSDEDGGDEEGGTEGATRRRRRRRRRKSGSGDDSDEASSPDDPPNTVVHERAPRRSSKADTDGGNGEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERTMVVRDKVRTEPPHEGARYTQIAVMEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVPADAGVIIRTASEGVKEEDIRTDVERLQKRWTEIEAKAAETTEKKAGAAIALYEEPDVLVKVIRDLFNEDFSGLIVSGDDAWNTINEYVNSVAPELLPRLTKYETAEDGPDVFAVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIMLHGDPVDSVSAGSRKSDTGGRRGKRGKKGAKADDVPVAKVPAHPAGEHPMFKAMAAANGKHEHGDEDTDGEVDETKAAKEVAELEPDTIREAYVEAEDEELEDEDFDESDEDESDEDESDEDESDEDESDEDEIDLDADDEDDDIDDDIEVINGDTDDDTESDDDEYDDDDTDEDDDSDDDSDDEHSDDDESDEDDSDEDDDNVHQPAAVSAAGGRHRRRAAMRPAGPPTHDG
>NC_019966.1|WP_015308034.1|4124151_4124463_-|50S-ribosomal-protein-L21
MASYAIVKTGGKQYKVAVGDVVKVEKLDAEAGAKVSLPVALVVDGAKVTADAKALEKVAVAAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK
>NC_019966.1|WP_015308033.1|4123873_4124140_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSAAQRLGVKRFGGQIVKAGEILVRQRGTHFHPGVNVGRGGDDTLFATAPGAVEFGTRRGRKTVSVVRPSAPQV
>NC_019966.1|WP_015308032.1|4122345_4123785_-|GTPase-ObgE
MPRFVDRVVIHAKAGNGGNGCASVHREKFKPLGGPDGGNGGRGGSIVLVVDPQVHTLLDFHFHPNVVAPSGKQGAGSNRDGAAGSDLEVKVPDGTVVLDENGRLLADLVGPGTRFEAAAGGRGGLGNAALASRARKAPGFALLGEKGQARDLTLELKTVADVGLVGFPSAGKSSLVSTISAAKPKVADYPFTTLTPNLGVVSAGEHTFTVADVPGLIPGASEGRGLGLDFLRHIERCAVLVHVVDCATLEPGRDPISDIEALEAELAAYTPTLQGDSTLGDLAERPRAVVLNKIDVPDARELADFVRDEIARRFGWPVFEVSTVSREGLRPLTFALWDMVATYRAAQPPMVPRRPVIRPIAVDESGFTVEPDGQGGFVVRGTRPERWINQTDFNNDEAVGYLGDRLARLGVEDELLRLGAKPGCAVTIGDMTFDWEPQTPAGVDVTLSGRGTDTRLEQTDRVGADERKAARKQRREQQP
>NC_019966.1|WP_015308031.1|4121248_4122349_-|glutamate-5-kinase
MSPHREAVRTARSIVIKVGTTALTAPSGVFDAGRLAVLADAIEGRMKAGSDVVIVSSGSIAAGIEPLRLSKRPTDLATKQAAASVGQVALVNSWSTAFARYHRTVGQVLLTAHDISRRVSHTNAQRTLDRLRALHAVAIVNENDTVATNEIRFGDNDRLSALVAHLVGADALVLLSDIDGLYDSDPRKGNARFISEVSRPDDLDGVVAGQGSHLGTGGMASKLSAALLASDAGVPVLLAAASDAATALADASVGTVFAPRAERMSARRFWVRYAAESAGALTLDDGAVRAVVRQRRSLLPAGITALSGRFYGGDVVELRSQDATMVARGVVAYDHSELATMLGRSTSELPAEMRRPAVHADDLVAV
>NC_019966.1|WP_015308030.1|4120373_4121210_+|NAD-dependent-protein-deacetylase
MEAPELVALLDGRRVAVLTGAGMSTDSGIPDYRGPDSPPSNLMTIRQFTSDAAFRQRYWARNHIGWQHMDATLPNAGHRAVAELEHAGVVSGVITQNVDLLHTKAGSRTVINLHGTYAQVICLDCGHTLSRTALAVLLDDANPGFVERAEAIGGIAVAPDADAVIGDTTSFRIIDCPACCGMLKPDIVYFGENVPKDRVEHAYSLVDGADALLVAGSSLTVYSGYRFVRHAAALGIPIAIINRGRTRGDDLATVKIDSGCSEMLALLADELPAVANSA
>NC_019966.1|WP_015308041.1|4133494_4134781_-|hypothetical-protein
MSAPEPPGRRHSDQQREFDIVLYGATGFVGKLTAEYLARAGGDARIALAGRSQDKLRAVRETLGDKAQSWPLIEADASQQSTLDAMAARTQVVVTTVGPYIKYGLPMVAACAAAGTDYADLTGESLFIRESIDLYHKQAIDTGARIVHSCGFDSIPSDLTVFALHRRAEQDQAGQLTNTNMVVRSFAAGVSGGTVASLLELLKVASSDPEARRLMIDPYTLTPDRAAEPELGAQPDARWRRGREIAPELDGYWTGAFVMAAANTRIVRRSNALLDYAYGRRFEYAEQMSVGKSIVAPVAAALATGGNAATIALGSRYFNRLPDKLVERIAPKPGTGPTERVREKGHYTIETYTTTTTGARYRSTMSQQGDPGYKATSVLLGESGFALALDRDRLSELRGVLTPAAAMGDALMARFPAVGVTLETNRLN
>NC_019966.1|WP_015308042.1|4134791_4136762_-|S9-family-peptidase
MTTPFDDLDAFLALPRASGLAVSPDGSRVVTSIAELNDKRTEFVNAIWELDPQGRKPARRLTRGAKGESSPVFTADGDLLFLAARPTEEDDKPPAALWRLPAAAGEAVEALTLPGGVDGVRTARAAAVTVVAAKLLRSASGVDDDKRLRALRKDNKVSAVLHSGYPVRHWDHDLGPDHPHLIDVYGPRELTPQPGDALREADFDVSSDGAFVVTSWHDPAPGASIRGRLVRVDVATGQRTVIADDPDADLGLPAISPDGTAVAFTRETHSTPDKAPRITLCHMRFGEPFVELTGEWDRWPTSVTWAVDGSAVIVTADENGRGPVFAVDPSNAAVTQLTDDDYAYTDVRTAPGGVVYAVRSSYARPSHPVRIDNDGTVTELPCVAAPELPGTLTEVTATADDGQTVRSWLALPHSDEPAPLVLWVHGGPLASWNAWHWRWNPWLLVAKGYAVLMPDPALSTGYGQDFIQRGWGAWGFAPYTDLIAATDAACAHPRVDGTRTAAMGGSFGGYMANWIAGHTDRFDAIVTHASLWALDQFGPTTDGAYWWAREMTPEMAERNSPHRFVGQIRTPMLVIHGDKDYRVPIGEALRLWFELLTESGLPAAEDGTSPHRFLYYPSENHWVLSPQHAKIWYQVVTAFLALHVLGEDVELPETLG
>NC_019966.1|WP_015308043.1|4136859_4137264_+|helix-turn-helix-transcriptional-regulator
MLAFMSTVVLAGLPGRACPIAASLELVGERWSLLIIRELALGNRRFSGIVEKTGAPRDRVAARLKALEQVGVVRRAAYQSTPPRFEYHLTDSGRGLIPVLDALTAWGLDHAVDPDDPDRPRFRRTPWQASERTP
>NC_019966.1|WP_015308044.1|4137260_4137791_+|PaaI-family-thioesterase
MTAELVDTDIQADWGPERSRTVTWHSPGPSTAKGLAMSGIDYMRAMVDGELPPAPIAGLMQFELVEVEPGRAVFTCVPDESAYNPIGAIHGGLICTLLDSVTGCAVHTTLPQGKGYTSVEIKVNYLKAVRLSSGLLTATGTVVKSGSRVGFSEGVVTDAGGAVVATATSTLLIFDL
>NC_019966.1|WP_015308045.1|4137810_4138317_+|FAD-dependent-oxidoreductase
MARRIVVVGAGIAGLATAVALQRRGHEVAVIEERTDTSSGAGISFWPNALAALDEIGIGEAVRAAGGRVTAGALRWRDGSWLRRPARERLVRALGEKLVLIRRSALAKVLADALAGGTVHTGLSARELVTTADGVRITLSDSTTRESAGGPPSSADSPAGRPCWCPQR
>NC_019966.1|WP_015308046.1|4138390_4138978_+|hypothetical-protein
MTTTLGPLVVDAVEPQAVERFWAAALGSSAQRSLLSFRPQARDKIVKNRVHLDVYVHALEPLLDLGATVLAEYLPERVTLADIEGNEFCAFLDPEMTSDPPARAFAVCTDSDRPEELAAWWAEHVGADIRNGPDGTPRWLYGCAGWEQLIWKFVRVHDDRVVPNRWQWTVQQDLGTLADPQGNEFGVTPPSSPAG
>NC_019966.1|WP_015308047.1|4138949_4139435_-|transglycosylase-family-protein
MNIRKAFTKGLVATAIAGALGLVPMALTPATANADSVNWDAIAQCESGGNWSTNTGNGAYGGLQFKQATWSSNGGVGSPATASRAEQIRVAENVLRTQGLNAWPKCGAQGASPAVWGTPSTPTAPPVTTGCAAMPTSGLLGFINPRQMCTALLNPLGSMGA
>NC_019966.1|WP_015308048.1|4139647_4139974_-|transglycosylase-family-protein
MKNIRKTFGLATIAGALVLAPMALATGTANADSGVNWDAVAACESGGNWSTATGNGYYGGLQFTMGTWHANGGSGSPSQASREEQIRVAENVLRTQGIKAWPVCGRRG
>NC_019966.1|WP_083906314.1|4141034_4141739_-|molybdenum-cofactor-guanylyltransferase
MPPVPRSPPHVTPSHTTRPHCSRCFAARTPGPSTNLSDVTPSVPLAAVILAGGASRRMGRDKANLPYHGSTLLERTMSIVSPRCAPVFVIAAPGQPLPKVEAEVLRDEVRGVGPLLATGRGLRAAADAGLGLAFVCAVDMPLLEVELIDELAGPAVRLGADVVLPWDGRDHYLAGIYRTSLADRVDELVAAGERSMRALVDRVDTQRIVMSEQASLTNVNTAADLNAIRPPQIA
>NC_019966.1|WP_015308050.1|4141635_4142712_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MTDVIGSDLGVTPLSKLSGVPTTDEPQKAKDFTSDQEVRWCPGCGDYVILNTIRNFLPELGLRRENIAFVSGIGCSSRFPYYLETYGFHSIHGRAPTIATGLALARPDLSVWVVTGDGDALSIGGNHLIHALRRNINITILLFNNRIYGLTKGQYSPTSEVGKITKSTPMGSLDYPFNPVSLALGADATFVGRALDSDRKGLSEVLRAAAAHRGAAIVEILQDCPIFNDGSFDPLRKEGAEERIINLSHGEPITFGADGAYCVVKSGYGLEVAKTADVSADEIVIHNATIEDPAYAFALSRLSEQNLEHMVMGIFRQVSKPTYDDAARTQVASARDAKPHDTAALQSLLRGKDTWTVD

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Crispr_ID: NC_019966_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019966_3

4713242-4713360

Orphan

Consensus_repeat	Method
CGAGCGAGGACCGGAGCGAGCGGGAGTCGAGGCATGAGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019966_3

>merge|NC_019966|3|4713242-4713360|CRISPRCasFinder
CGAGCGAGGACCGGAGCGAGCGGGAGTCGAGGCATGAGCACCCGAAGACGAGCGCGAGTGAGGATCGCAGCGAGGAGCGAGCGAGGACCGGAGCGAGCGGGAGTCGAGGCATGAGCACC

>NC_019966|3|3|4713242-4713360|CRISPRCasFinder
CGAGCGAGGACCGGAGCGAGCGGGAGTCGAGGCATGAGCACC	CGAAGACGAGCGCGAGTGAGGATCGCAGCGAGGAG
CGAGCGAGGACCGGAGCGAGCGGGAGTCGAGGCATGAGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019966.1\|WP_015308574.1\|4716655_4718479_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182342
NC_019966.1\|WP_041312570.1\|4723775_4724486_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224095
NC_019966.1\|WP_085976631.1\|4707415_4708675_-\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	unknown	unknown	gnl\|CDD\|133031
NC_019966.1\|WP_015308566.1\|4708727_4710626_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|379080
NC_019966.1\|WP_015308561.1\|4703446_4704256_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270231
NC_019966.1\|WP_015308576.1\|4720193_4721480_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NC_019966.1\|WP_085976633.1\|4715747_4716659_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_019966.1\|WP_015308575.1\|4718536_4720207_+\|ABC-transporter-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173866
NC_019966.1\|WP_041314743.1\|4712306_4713011_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_019966.1\|WP_015308560.1\|4702353_4703277_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_019966.1\|WP_015308572.1\|4714761_4715739_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_019966.1\|WP_015308578.1\|4722841_4723765_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270324
NC_019966.1\|WP_083906422.1\|4713384_4713918_+\|hypothetical-protein	unknown	unknown	unknown
NC_019966.1\|WP_015308562.1\|4704314_4704740_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_019966.1\|WP_015308567.1\|4710649_4712329_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_019966.1\|WP_015308559.1\|4700509_4702354_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|180120
NC_019966.1\|WP_015308563.1\|4704855_4705347_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239474
NC_019966.1\|WP_015308577.1\|4721568_4722786_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173852
NC_019966.1\|WP_085976632.1\|4713925_4714156_-\|hypothetical-protein	unknown	unknown	unknown
NC_019966.1\|WP_015308564.1\|4705479_4707384_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720

Protein	Function_ID	Function_description	E-value
NC_019966.1\|WP_015308574.1\|4716655_4718479_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	1.33002e-164
NC_019966.1\|WP_085976631.1\|4707415_4708675_-\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	gnl\|CDD\|133031	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.	1.97919e-71
NC_019966.1\|WP_015308566.1\|4708727_4710626_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	2.70938e-24
NC_019966.1\|WP_015308561.1\|4703446_4704256_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270231	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes cyclohexadienyl dehydratase PheC. These proteins catalyze the decarboxylation of prephenate to phenylpyruvate in the alternative phenylalanine biosynthesis pathway in some proteobacteria and archaea. The PheC proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Since they the PheC proteins are so similar to periplasmic binding proteins, (PBP), it is evolutionarily plausible that several pre-existing PBP proteins might have been recruited to perform the enzymatic function.	1.13605e-108
NC_019966.1\|WP_015308576.1\|4720193_4721480_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.77227e-14
NC_019966.1\|WP_085976633.1\|4715747_4716659_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.11969e-92
NC_019966.1\|WP_015308575.1\|4718536_4720207_+\|ABC-transporter-family-substrate-binding-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.44343e-159
NC_019966.1\|WP_041314743.1\|4712306_4713011_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.56152e-81
NC_019966.1\|WP_015308560.1\|4702353_4703277_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_019966.1\|WP_015308572.1\|4714761_4715739_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.71576e-101
NC_019966.1\|WP_041312570.1\|4723775_4724486_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	5.70106e-46
NC_019966.1\|WP_015308562.1\|4704314_4704740_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.34924e-27
NC_019966.1\|WP_015308567.1\|4710649_4712329_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.85242e-58
NC_019966.1\|WP_015308559.1\|4700509_4702354_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|180120	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional.	0
NC_019966.1\|WP_015308563.1\|4704855_4705347_-\|carbonic-anhydrase	gnl\|CDD\|239474	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	3.80216e-64
NC_019966.1\|WP_015308577.1\|4721568_4722786_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	1.88784e-110
NC_019966.1\|WP_015308578.1\|4722841_4723765_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270324	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold. This group includes periplasmic substrate-binding component of ABC transport systems from gram-negative and -positive bacteria that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.94631e-127
NC_019966.1\|WP_015308564.1\|4705479_4707384_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.00395e-25

>NC_019966.1|WP_041314743.1|4712306_4713011_-|response-regulator-transcription-factor
MRRADGKPIQVLVVDDEPVLAELVSMALRYEGWEIATAGDGASAIASAKETPPDVVVLDVMLPDMSGLDVLHKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTGVTSETGGAKVVVGDLVLDEDSHEVTRGGELISLTATEFELLRFMMRNAKRVLSKAQILDRVWSYDFGGRSNIVELYVSYLRKKIDNGREPMIHTLRGAGYVLKPPR
>NC_019966.1|WP_015308567.1|4710649_4712329_-|HAMP-domain-containing-histidine-kinase
MSSSPRADVRRGRFRSPRSWSLRARLLASQIVLLALVCAAIGVVTELALQRFLMNQLDDRLAETGHRSVGLFEFGPPMGAPGRPAPPGPPGLDQMMPGPPSLDHMPGPSGRDELPAFPPPDFPRRIFIRNDFGPGPAFLNAPGQAARTVGAIVKRGAPVDAGIINADGTQSGISSTAAQQLATVVPNDRPITMRLDGLGRYRVVAMHARGPGETIVTGLPTSEVDDTLLTVMVIFGVVGAVALVGGTTAGIIIIRRQLAPLSRVSEAARQVADLELDRGEVRLPTPIVKVDPASADTEIGQLGSALNRMLDRIAGALSARHASETRVRQFVADASHELRTPLAAIRGYTELAQRKRDDLPDDVAHAMSRVESETERMTQLVEDMLLLARLDTGRPLEREQVDLSRLVVDAVSDAHIAGPDHQWSLDLPDEPVVVVGDEARLHQVLANLLANARTHTPAGTTVTTSLSLDDSDGAVLMVTDDGPGIPQWLQPEIFERFARGDSSRSRRGGSTGLGLAIVAAVVRAHGGIIGVHSVPGKTEFVVKFPGNSQANHSASKTGA
>NC_019966.1|WP_015308566.1|4708727_4710626_-|phospholipid-carrier-dependent-glycosyltransferase
MTALVLDAEQTQTRTNSAAGVRVRVWSRIRLGVLLVATAVLYLWNLSVSGWANAFYSAAAQAGASDWTAMLFGSGDAANAITVDKTPAALWIIDASVRLFGLNPWSVLVPQALEGVAAVAVLYAAVRRVSGEGAALLAGAVFAVTPVAALMFRFNNPDALLVLLLVAAAYCVLRACDTDSSTQAGEAGRAQTWWLVAAGVLVGFGFLAKMLQAFLVLPGFGAAYLVAGGHRMRGRVVDLLAALAAVVVSGGWYLLLVELWPANARPYIGGSQHNSIVELALGYNGLGRLTGDEPGGLGNLNFDVGWGRLFGNGMGPEIAWLLPAAVICLGAGLIITRRAPRTDLTRAALILWGGWLAVTAAVFSFANGIVHPYYTVALAPAIGAVIGIGATLLWRNRSDLRAATALSGTVLVTTILAAVLLSRDSEWLPWLRAAVAVAGVGAAVLLLVAGRLASSVGRSAAALAVVACLAAPAVYSVATAAAPHSGAIPSAGPAKHGVGGFTGPGGLLDSPTPGKELSATLSANAHGFTWAAATVGSNNAAGYQLATGAPIMAIGGFNGTDPSPTLQEFQQYVAHRQIHYFIRGRMTIGHWGRATGSSESTDIAEWVETHYTPVTVDRVILYDLTQPSAIHS
>NC_019966.1|WP_085976631.1|4707415_4708675_-|bifunctional-glycosyltransferase-family-2/GtrA-family-protein
MTDIALEPLTGLGHHFESRPNAARAARAAGVPVLDVVVPVYNEQAALADSVHRLHRFLRENLPFETRITIADNASIDDTPRIAAELADELSDVRVVRLEQKGRGRALHAVWSTSDAPVLAYMDVDLSTDLAALAPLVAPLISGHSDLAIGTRLGRGARVVRGPKREIISRCYNLILKSTLAAGFSDAQCGFKAIRADVAERLLPHVSDTGWFFDTELLVLAERSGLRIHEVPVDWVDDPDSRVDIVATATADLKGIGRMLRGFADGSIPVNTIAAQLGSSRKSAAPGSLFRQVVRFGAIGVASTAAYVLLFMLMQGWAGAQAANLIALLLTAIGNTAANRRFTFGVGGAINATRHHIEGLVVFGIALMITSGSLAALHAVVAQPHHLFELAVLVLANLVATAVRFVLLRGWVFHPRRSN
>NC_019966.1|WP_015308564.1|4705479_4707384_-|glycosyltransferase-family-39-protein
MTITEALAQTAVASEGPPRRNPRWVRPAVLALLATTAVLYLWGLGSSGWANNYYAAAAQAATQDWKAWLFGSLDAGNAITVDKPPAALWVMGLFGRLFAFSAFTMLLPETLMGVGAVGLLYLAVRRASGPAAGLIAGAGLALTPVAVLMFRFNNPDALLVLLLVAAAYCMVRAIETASTRWIALVGIVIGFAFLTKMLQAFLIVPGLALAFLVAAPVGTWKRIGKLLVGAATMVVSGGWYVALVSLWPADSRPYIGGSTDNSLLQLALGYNGIQRIAGGEGGPGGGPGGGGGPKGANLFFGGEPGIGRLFGPSMGVEASWLLPAALIGLAAGIWFTRRTARTGSVRAGLLLWGGWLLVTGAVFSFMNGTVHPYYTVALAPAVAALVGISAVELWRGREFVMPRVVLAVMVAATGVWAFILLDRTPDWSPALRWIVVAGSVVVAAVLAVGAHRLGRAAVVLVTAAALLGLAAPTAFSIYNVTHAHSGPGTMSGPIREAGFGGGGPGGRGGLFGGRGPGGGNEDNAALAQLLEGADNRWAAASIGSMGVSGLELKTGASLMAIGGFTGSDNSPTLAQFQSYVADHEVRYFIGSDNHGGPGRGRSGPAQQITTWVQQNFTPIDVGGATVYDLSQSKA
>NC_019966.1|WP_015308563.1|4704855_4705347_-|carbonic-anhydrase
MSVTDEYLKNNEAYASTFTGPLPLPPSKHVAVVACMDARLDVYRILGLGDGEAHVIRNAGGVITDDEIRSLAISQRLLGTKEIILIHHTDCGMLTFTDDGFKQQIQDETGIKPEWAAEAFVDLEEDVRQSLRRIEASPFVTKHESLRGFIFDVATGRLNEVTL
>NC_019966.1|WP_015308562.1|4704314_4704740_+|PaaI-family-thioesterase
MSTPTQRQTGADVMAQFIPSSPFVAKLGIVADKLDADEVRLRLPWDPTNVTVANMVHGGAIAALADVAVMAAAWAGAEVPDSLRGVTVAMSMQFLAPARATDLIAVGRVLRRGKTLVNCDVDVVTPEGEAVAKAIATYKVG
>NC_019966.1|WP_015308561.1|4703446_4704256_-|transporter-substrate-binding-domain-containing-protein
MTAIRSAALTVLIALLTSCGSTATPPTTMQRAGGLPGIAQRGAVRVCSTGDYRPFTYHDPQGNWSGLDIEMAHDMADRLAARLDVVPTTWANLITDLNNKCDVAMGGISITLNRAKQALYSAPYLRDGKAAIVRCADAANYQTLDDIDRPGVRVVVNPGGTNADFDKDHLRNAQVVTYPDNNTIFEQLTNNAADVMITDASEIRWEENQEPQLCGVSLDHPFTFEQKGYLVAQSATDLQQWIDQWLNIAQNDGTYAALSRKYLGAVIGP
>NC_019966.1|WP_015308560.1|4702353_4703277_-|sulfate-adenylyltransferase-subunit-CysD
MTATQELNAGRYELSHLRSLEAEAIHIIREVAAEFERPVLLFSGGKDSIVMLHLAIKAFRPGRLPFPVMHVDTGHNFDEVLQTRDELVAESGVRLVVAKVQDDIDAGRVVETIPSRNPMQTFTLLRAIRENKYDAAFGGARRDEEKARAKERVFSFRDEFGQWDPKAQRPELWNIYNGRHHKGEHIRVFPLSNWTEFDIWSYIGAEKIKLPSIYYAHERQVFERDGMLLAVHKYMQPRKDEEVITKTVRFRTVGDVTCTGCVESLAGTVSEVIAETAVSRLTERGATRADDRISEAGMEDRKREGYF
>NC_019966.1|WP_015308559.1|4700509_4702354_-|sulfate-adenylyltransferase-subunit-CysN
MTTLLRIATAGSVDDGKSTLIGRLLFDSKAVMEDQLAAVERTSKERGHDYTDLALVTDGLRAEREQGITIDVAYRYFATAKRKFIIADTPGHIQYTRNMVTGTSTAQLAIVLVDARHGLLEQSRRHAFLASLLGIRHIVLAVNKMDLIGWDREQFEKIRDDFHEFAARLDIHDVTTIPLSALQGDNVVTKSDNTPWYDGPSLLSHLEEVYIAGDRNLVDVRFPVQYVIRPQSLDHHDHRSYAGTVASGVMRPGDEVVVLPSGKSSRITAIEGPSGPVQEAFPPMAVSISLADDIDISRGDLIARPNNQPRVAQDFDATVCWMADETALEPGRDYIIKHTTRSTRVKVTALDYRLDVNTLHRDKSATALKLNELGRISLRTQVPLLLDEYSRNAATGSFILIDPNTNGTVAAGMILPYVTARTASPNTVRHQSLCTSEDRLSKGRTVWFTGLSGSGKSSVAMLVEQKLLEKGCPAYVLDGDNLRHGLNADLGFSMADRAENQRRLAHIAAILADSGQVVLVPAISPLEEHRALARKVTTDAGLDFFEVFCDTPLEDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDIRLTPDRSTEELADMVIELLETRR
>NC_019966.1|WP_083906422.1|4713384_4713918_+|hypothetical-protein
MWGAPQPEPRRWGWRESAAAAAVAAVIAALGGAAIYAATQGTSHPFGASHQAPGPPGGMQAGGSGRQGGRPGQGDIAPPSLHGEFVVADGNGGYRTELTQTGAVTAISPTSITVRSQDGFSQTYVIPNTAGNAAAPFAVDDQVAIHAIRDGQTATVTNIGNPLPDLGGTGSAPIRHN
>NC_019966.1|WP_085976632.1|4713925_4714156_-|hypothetical-protein
MNPSQLKLVAAGIGAGALVALGASSVVFSGAPGSISEGPEITLGGTTTSTTAPTTVETSVATPPVTATPPSGFATP
>NC_019966.1|WP_015308572.1|4714761_4715739_+|ABC-transporter-permease
MTRFLVRRLLNYLVLLAVASFLTFSLASLTFRPLDSLIQRNPRPPQAVIDAKAAELNLDKPIPLRYGHWVSGVVHGDFGSTIGGQPVSGELWRRIGVSLRLLVIGSVVGTVIGVVVGAWGAIRQYRLSDRVITVLSLLVISTPVFVIANLLILAALRVNSVLGVQLFEYTGETSPDAVGGAWNQFVDRLQHLVLPTFTLALGAIAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALFKHGLRTALIPMATLFAYSLAGLFTGAVFTEKIFGWHGIGEWFVQGIATQDVNIVVAITLFSGVTILLAGLLSDVIYAALDPRVRVQ
>NC_019966.1|WP_085976633.1|4715747_4716659_+|ABC-transporter-permease
MTTDTATTAKSGVDVARFASRRELVWRRFLRNKAAVVSLVLLVALFIACYALPPVLPYSYTDLDFYALQQPPSTDHWFGTNALGQDLLAQTLRGMQKSMLIGVCVAFISTIIAATVGTIAGYFGGLRDRTLMWIVDLMLVVPSFLLITIVVQRTKGDIVWLIVLLAVFSWMISSRIVRGMTMSLRDREFVSAARYMGVSSWRIIVRHILPNVASIIIIDTALNVGVAVLAETGLSFLGFGIQPPDVSLGTLIADGTKSVTTFPWVFLFPAGVLVLIILCSNLVGDGLRDALDPSARPLRKRRR
>NC_019966.1|WP_015308574.1|4716655_4718479_+|ABC-transporter-ATP-binding-protein
MSLLQVSGLTVTFPTDAEQVNAVRGMNFDVDAGEVVALVGESGSGKSATAMSIIGLLPEYADVSGSIRLRGEELLGLSDGEMSQIRGRAIGTVFQDPMSALTPVYSVGDQIAEALEIHRPDIGKRAARTRATELLELVGIAQPERRARSFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILEVLRTARDVTGAGVLIITHDLGVVAEFADRALVMYAGRAVETAGVDALYRDRRMPYTAGLLGSVPRLDAPQGTRLVPIPGAPPSMAALPPGCPFAPRCPLAIDDCRAAEPELIELTPGHRAACIRTDQVAGRSAAEIYRVSTEAPPVVADRDAPVVLRVTDLTKTYTLTKGVVLRRKVGEVHAVGGISFELQQGRTLGIVGESGSGKSTTLHQILELAAPQSGSIEVLGADVATLDRHSRRALRGDLQVVFQDPVAAVDPRLPVFDVLAEPLQANGFDKNRTDERVAELLGIVGLRREDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINLLLDLQERFGLSYLFVSHDLSVVKHLAHRVVVMYEGKIVEQGDGDEIFTNPQQEYTRRLLAAVPQPL
>NC_019966.1|WP_015308575.1|4718536_4720207_+|ABC-transporter-family-substrate-binding-protein
MKFRRFAVVALIAGLILTGCSGGKKETPQAGGSAEVGTTNDINPQDVSKLQRGGNLRLALTAFPENFNPLHIDGNSADSAGMLKSSMPRAFRIAADGSMTLNTDYFTGAELTGTNPQVVTWTINPKAVWSDGTPITWEDIASQIHATSGKDKAFAAASPNGSDRVESVTRGVDDRQAIMKFAKPYAEWRGMLSGNTMLLPKSMTSTPEAFNKGQLNGPGPSAGPFIISTVDRTAQRITLTRNPKWWGAPTLLDSVTYLVLDDAARIPALQNNTIDATGLATLDELTIARGTNGVAIRRAPGLSWYHFTFNGAPGSILADKNLRLAIARAIDRQTIANVTQRGLADNPVPLNNHVYVAGQEGYQDNSGVVAFDPEKAKQELDALGWKLNGQFREKDGKQLVIRDVLYDSLSTRQFGQIAQNNLAQVGVKLDLDTKGGAGFFSNHINVGDFDIAQFSWVADAFPLSGLPQIYASDGESNFGKIGTPEIDAKIEQTLQELDPAKARELANEVDKLLWAEGFSLPLTQSPGNVAVRSTLANFGAFGLADADYSKIGFMKP
>NC_019966.1|WP_015308576.1|4720193_4721480_-|alpha/beta-fold-hydrolase
MTMNAKRRRAHDKLAALPGVRAVRRPIRPGSHVAGQAALEGGEDFDLFYVRTGRKSAHPLVVIPGGPGAASIALYRGFRRRAAAQGLDVIMIEHRGVGMSRHDDAGTDLPPEALTIDQVVDDVAAVLDDARVLTATIYGTSYGTYVAAGVGVRHPNRVHAMILDSPVLSADDIDAVREATRRLLWDGDTPETADLAAKVRQLVGQEMLSPTATQLAAAVYGFAGPAVLQRQLDLLLAGRRALWSALDRGARFLFERKAPYRHEPDLVGRIGYRELNYAAVPDGKPLDPAAAYREFDLGATEFEAEPFDLVDAMPKFSWPTVVISGGRDLITPPAVADRIASLIPGAVLVKLATAGHSAIDLRERAALDIIKATYDGATAGLPARAKKLDSTPGGLGVRLLIWGIAAAAAVEQAVPAAVPRAVQRVTAS
>NC_019966.1|WP_015308577.1|4721568_4722786_+|acyl-CoA-dehydrogenase
MTSVDRVTRTLPGSPEWAALLSQIGAGAKDRDLNDENPFDQVSALKRAGFGTLRLPEHLGGAGLTVPQLFSAVIDVARADPIVAHIFRTHFWFVEERLRTVDDPSSARWLHKVAAGKIFGNAFSEKGALAVGSLVFNTRLLPDAAFPGSGYRLNGEKFYSTGTLFSDYLTVATTTDHDSVATVVVPADRDGVRLIDDWDGFGQRRTGTGTTVFTDVAVSADEILSDTPYDAHPVPTVQYASLQLYIHAVVAGILASVVDDGVALLRSRDRSFSHALSERPTDDPLYQKQLGELAATAYIARAVVLDAAEAIAAATVTDGVPDAQLAAEAQLKVAKVKVHLDGVAPEAATRLLELGGASAASRQRNLDRHWRNIRTITLHNPVAYKARVIGQNLLHGTPVPANAYF
>NC_019966.1|WP_015308578.1|4722841_4723765_-|ABC-transporter-substrate-binding-protein
MKKRTLLSALAAASVLALSACGGGGGDPLSGGGNNSGSSGSQVIVGSADFTESQLIASIYSQALQANGVGVKEQFNIGSREVYLQALKDGSIDLVPEYTGALLSYLDPKSTAATPQAVQSELATKLPAGTAMLTPSPAEDKDVVAVTQATADKYKLKTISDLKPVAGELVLGGPPEWKTRTQGVVGLRDLYGLNFKDFVSLDAGGTLTMTALTNGQIQAGDLFSTDPGLHANHLVALSDDKNLFAAENVVPLIKSGKQNDSITKTLNAVSAKLTTDDLISMNAEAAKGTNLSDIAKKWLASAGISKS
>NC_019966.1|WP_041312570.1|4723775_4724486_-|ABC-transporter-permease-subunit
MTDPVNWSGSGGIPAQVGYHLLYSVIALLAALVIAVPLGILIGYTGRGEALVAGSANALRALPSLGLLVLLFLVISPVVAGKLVYVLPTIVVLVLLAVPPILTGTYAGIQTADPDAVGAARGMGFTKSQILLRVQLPCALPLMVSGVRSATLQIVSTATIAAYLGLQGLGRFILDGRAQASFSEMAGGAILVAILAIVLEFTFAWLGRVIVSPGLRRTASKSSSPISTTVLEPATT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_019966_1	1.1\|570938\|19\|NC_019966\|CRISPRCasFinder	570938-570956	19	NC_019966.1	5952646-5952664	2	0.895

1. spacer 1.1|570938|19|NC_019966|CRISPRCasFinder matches to position: 5952646-5952664, mismatch: 2, identity: 0.895

cccggccaaggccccggcc	CRISPR spacer
cccggccatggccccgacc	Protospacer
******** *******.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019966_1	1.1\|570938\|19\|NC_019966\|CRISPRCasFinder	570938-570956	19	MK069556	Microcystis phage Me-ZS1, complete genome	9190-9208	0	1.0
NC_019966_1	1.1\|570938\|19\|NC_019966\|CRISPRCasFinder	570938-570956	19	NZ_CP023993	Streptomyces malaysiensis strain DSM 4137 plasmid unnamed, complete sequence	40423-40441	0	1.0
NC_019966_3	3.1\|4713284\|35\|NC_019966\|CRISPRCasFinder	4713284-4713318	35	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4489145-4489179	4	0.886

1. spacer 1.1|570938|19|NC_019966|CRISPRCasFinder matches to MK069556 (Microcystis phage Me-ZS1, complete genome) position: , mismatch: 0, identity: 1.0

cccggccaaggccccggcc	CRISPR spacer
cccggccaaggccccggcc	Protospacer
*******************

2. spacer 1.1|570938|19|NC_019966|CRISPRCasFinder matches to NZ_CP023993 (Streptomyces malaysiensis strain DSM 4137 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cccggccaaggccccggcc	CRISPR spacer
cccggccaaggccccggcc	Protospacer
*******************

3. spacer 3.1|4713284|35|NC_019966|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.886

cgaagacgagcgcgagtgaggatcgcagcgaggag	CRISPR spacer
cgaagacgatcgcgagcgaggatcgcagcgaggca	Protospacer
********* ******.**************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2133016 : 2141556

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015306097.1\|2133016_2133883_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.5e-05	33.3
WP_015306098.1\|2133879_2135058_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	9.4e-56	36.8
WP_015306099.1\|2135063_2136104_-	DNA polymerase IV	A0A2H4JBL5	uncultured_Caudovirales_phage	3.1e-10	24.9
WP_015306100.1\|2136100_2136709_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015306101.1\|2136797_2137340_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	2.4e-06	33.9
WP_015306102.1\|2137352_2137907_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_015306103.1\|2137903_2138227_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_015306104.1\|2138701_2138944_+	redoxin NrdH	V5UN81	Mycobacterium_phage	1.4e-22	67.5
WP_015306105.1\|2138977_2139421_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_015306106.1\|2139387_2141556_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.6e-210	52.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_019958

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019958_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019958_1

94617-95134

TypeI-E

I-E

Consensus_repeat	Method
GGGCTCATCCCCGCAGGCGCGGGGAA	CRISPRCasFinder
GGGCTCATCCCCGCAGGCGCGGGGAAGAC	CRT

8 spacers

cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_019958_1

>merge|NC_019958|1|94617-95134|CRISPRCasFinder,CRT
GAACTCATCCCCGTAGGCGCGGGGAGGATAGTGCCGCCGGTCCGCTCAGCAACGCGATCAGGGGCCCATCCCCGCAGGCGCGGGGAAGACAAACGCACCGCCTCCGAACCGAGCTGGTAACTCGGGCTCATCCCCGCAGGCGCGGGGAAGACGAACGCCTTACCCATCACAGTCGCGCGCGATCGGGCTCATCCCCGCATACGCGGGGAAGACTGTGCCGCCGATCCACTCAGCGACGCGATCAGGGGCTCATCCCCTCACACGCGGGGAGGACACTATGCCGGGAACGCGCGGCCAGATCCACTTGGGCTCATCCCCGCGGGTGCGGGGAAGACGTAGCCACTGCCGACGGGCTGTCCCACATCCCGGGCTCATCCCCGCAGGCGCGGGGAAGACGAGACCGTCAGGCTGCGCGGGTATTCCTCCCCGGGCTCATCCCCGCAGGCGCGGGGAAGACGACGGCGCGCCACCATGAGACGCCGCCGGATTGGGCTCATCCCCGCAGGCGCGGGGAACAC

>NC_019958|1|1|94617-95131|CRISPRCasFinder
GAACTCATCCCCGTAGGCGCGGGGAG	GATAGTGCCGCCGGTCCGCTCAGCAACGCGATCAG
GGGCCCATCCCCGCAGGCGCGGGGAA	GACAAACGCACCGCCTCCGAACCGAGCTGGTAACTC
GGGCTCATCCCCGCAGGCGCGGGGAA	GACGAACGCCTTACCCATCACAGTCGCGCGCGATC
GGGCTCATCCCCGCATACGCGGGGAA	GACTGTGCCGCCGATCCACTCAGCGACGCGATCAG
GGGCTCATCCCCTCACACGCGGGGAG	GACACTATGCCGGGAACGCGCGGCCAGATCCACTT
GGGCTCATCCCCGCGGGTGCGGGGAA	GACGTAGCCACTGCCGACGGGCTGTCCCACATCCC
GGGCTCATCCCCGCAGGCGCGGGGAA	GACGAGACCGTCAGGCTGCGCGGGTATTCCTCCCC
GGGCTCATCCCCGCAGGCGCGGGGAA	GACGACGGCGCGCCACCATGAGACGCCGCCGGATT
GGGCTCATCCCCGCAGGCGCGGGGAA

>NC_019958|1|1|94617-95134|CRT
GAACTCATCCCCGTAGGCGCGGGGAGGAT	AGTGCCGCCGGTCCGCTCAGCAACGCGATCAG
GGGCCCATCCCCGCAGGCGCGGGGAAGAC	AAACGCACCGCCTCCGAACCGAGCTGGTAACTC
GGGCTCATCCCCGCAGGCGCGGGGAAGAC	GAACGCCTTACCCATCACAGTCGCGCGCGATC
GGGCTCATCCCCGCATACGCGGGGAAGAC	TGTGCCGCCGATCCACTCAGCGACGCGATCAG
GGGCTCATCCCCTCACACGCGGGGAGGAC	ACTATGCCGGGAACGCGCGGCCAGATCCACTT
GGGCTCATCCCCGCGGGTGCGGGGAAGAC	GTAGCCACTGCCGACGGGCTGTCCCACATCCC
GGGCTCATCCCCGCAGGCGCGGGGAAGAC	GAGACCGTCAGGCTGCGCGGGTATTCCTCCCC
GGGCTCATCCCCGCAGGCGCGGGGAAGAC	GACGGCGCGCCACCATGAGACGCCGCCGGATT
GGGCTCATCCCCGCAGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019958.1\|WP_015298004.1\|90612_91212_-\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298017.1\|103411_103675_+\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298005.1\|91547_91964_+\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298009.1\|94079_94343_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|377904
NC_019958.1\|WP_157681621.1\|107409_108057_+\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298011.1\|95849_96533_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NC_019958.1\|WP_015298015.1\|99971_102716_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_019958.1\|WP_085976657.1\|89965_90628_-\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NC_019958.1\|WP_015298013.1\|97687_98338_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_019958.1\|WP_015298001.1\|88708_89419_+\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_041315999.1\|87435_87657_+\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298007.1\|92935_93580_+\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|214933
NC_019958.1\|WP_015298014.1\|98334_99975_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NC_019958.1\|WP_015298020.1\|104652_105384_-\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_157681620.1\|89498_89876_-\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298019.1\|104106_104577_-\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_041316003.1\|102881_103238_-\|hypothetical-protein	unknown	unknown	unknown
NC_019958.1\|WP_015298012.1\|96529_97660_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_019958.1\|WP_015298000.1\|87660_88557_+\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|350282
NC_019958.1\|WP_015298006.1\|92354_92939_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019958.1\|WP_015298007.1\|92935_93580_+\|RES-family-NAD+-phosphorylase	gnl\|CDD\|214933	smart00953, RES, RES domain. This presumed protein contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. RES is found widely distributed in bacteria, it has about 150 residues in length.	1.37791e-09
NC_019958.1\|WP_015298015.1\|99971_102716_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.95127e-79
NC_019958.1\|WP_015298014.1\|98334_99975_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	4.89658e-113
NC_019958.1\|WP_015298009.1\|94079_94343_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|377904	pfam07704, PSK_trans_fac, Rv0623-like transcription factor. This entry represents the Rv0623-like family of transcription factors associated with the PSK operon.	2.00497e-11
NC_019958.1\|WP_015298011.1\|95849_96533_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	8.88309e-54
NC_019958.1\|WP_015298012.1\|96529_97660_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.47609e-149
NC_019958.1\|WP_015298013.1\|97687_98338_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.33263e-37
NC_019958.1\|WP_085976657.1\|89965_90628_-\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	1.40797e-09
NC_019958.1\|WP_015298000.1\|87660_88557_+\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|350282	cd18715, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.4935e-18

>NC_019958.1|WP_015298009.1|94079_94343_-|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MALIIDDPEVERLATEVAAKMGITEIAAICEALRSARRAFGIVQRPDRAEDLLEVMRTEIRPLITDRRPVLRSEREQTLGYDPATGV
>NC_019958.1|WP_015298007.1|92935_93580_+|RES-family-NAD+-phosphorylase
MTARLPGPPSTEELRAIGIRDVKLRTVDTDETWWRVHRTTGTHVLGWNAFREHGPHLRFDPHPPPARHHDGIGVWYGASEPLPALAEAFQADRTIDRFRGDPYLTAVRFTRALELLDLAADSTGAWPTRAGGTFALSTGPHSITQRWARRITEAFPDLDGLRYNSRFAGQPCIALFTTAATAMPTRPTLSLPLTHPGLTTRIAAAAQRLGYLTI
>NC_019958.1|WP_015298006.1|92354_92939_+|hypothetical-protein
MSVSTELEQLLRDRFEISPDDFVNALRYLPASRPWAASLTEAEARLLDDADFAEDRDAFIAAGTEIAGHTAHLAVTAFTADEVASGLNISASRVRQKRLAGELWAIPDGQTWLFPILQFETGDNGGPTCQVRGLDQVLNALPGDLHPVAVAGFLRTPQPDLVHGRPMTPIEWLRTGGDVDQAVAAASAVDWYAT
>NC_019958.1|WP_015298005.1|91547_91964_+|hypothetical-protein
MTKGRRPRSVVGGCGLLALAATVAVIGARLPAGGAGPLLTRYAAIAGIVGVVWLLLAFLDRRHQPAQAYFYVSAIQDGRAVLVTGPYATRDLAAGDIARVRGALAEHGSLDRAYSWGVSESPDRFDGLANAELGFQPA
>NC_019958.1|WP_015298004.1|90612_91212_-|hypothetical-protein
MTVDELDQLLRDRFDLGRDDLIAALKTLPAHRPWAATLTAGEARLLDEAGFAEDPDAYAEIAADVTAHMARLYSTAYTAAEVASGLGVNDSRVRQRRLNHTLWAIDDGGTWVYPVVQFELVDNGRGAPLTLKHVRGLDRVLPQLLTKGLHPTAIAGFLLTPQPELPLGGQPTSVREWLLAGESEEPVLTLVDVGDWAAT
>NC_019958.1|WP_085976657.1|89965_90628_-|RES-family-NAD+-phosphorylase
MGGNVTPDPMLPDPPPADEMRALGIRAGETRIVAVDELWWRVHKTAGGHVLAWNSLRTFGPLLRFDPHRLPRGEDPGRGVWYGASTPDAALAEAFQVDRTIDRGLNGPYLTALSFTRPLTVLDVAADSHGAWATRAGGTYAMSTGLHAVTQSWARAIVDAHPDIDGLRYNSRFAGAPCLALFAPAADAMPVRPQLSLPLTHPNLAARIAGAASRLGYGVA
>NC_019958.1|WP_157681620.1|89498_89876_-|hypothetical-protein
MNTRSGAHKPTQRPVLPDDTKLAWELADTARNHLSAAETSSVHIAIGLGDQFAAIDLLLTVIAREQVHADADLMATVTAWLDCYRGHDDEPRLRDLLAGVAAGACPARAPDAVRRDDPGLDAATA
>NC_019958.1|WP_015298001.1|88708_89419_+|hypothetical-protein
MRRAYIAADEPFDRAVARALLWAGETATIHAPDTASIDENNLNDYGVPVTCASRRSKFFGTPRGTVICTFLDLSQVLDVERHGRSRGVLPATVGGLIVVDAYGPQPYAKDGQHHSPWITALDVEHLAGEPITPVAPAPAPLRAAIADLTMIAVRNQGLLDKRERSEAVHAMSYLRARGLPLDPDALMVEALRNEWGGTGPETLRQIAIDLNKGTNLQYDKRRLGPDRLQRWATTTD
>NC_019958.1|WP_015298000.1|87660_88557_+|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MLRVVGDTNVLVSAAIGSRHGASAKLLAAAKRHDITLLACNALIDEVTEVLARPHLRARISEQDAQAFVDGVILLAEWVQDRPESQIPQVCADADDNFLVALYQDGDAAMLVSGDKKVRQISYPNVHVYSPLDAINTLTRQHDSDDGFLPGRAEDFYLHVDAEGIRPLVTLYAYLHKQLMFGSPSELSSILPNLIVPERLPLFRSNIDAMRALLDNRSLYSRPSYAAPDVCHLRLPPNTGELVRSTRDIVLPEDTIFLTALRCPDLEDPPWLAVDHWRVFHIDLDPVPPSAIGARSPR
>NC_019958.1|WP_041315999.1|87435_87657_+|hypothetical-protein
MSAGEQQKQAARARLAARRGAWTTDAELIDAALPAPADDSHPAIDEPEVNDFVEHEMAAMREERRAHHDVTAR
>NC_019958.1|WP_015298011.1|95849_96533_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTLLIRLAGPMQAWGASSRFSRRDTRQEPTKSGVLGLIAAAQGMRRTDGLEHLAALPFGVRVDQAGVLIRDYQTAMTPDGTKPSDRYYLGDAVFVAGIEGDPTVIKEIVAALRNPAFPLYLGRRSCPPSQPLPIAVTEDRLLAALRECPWQAATWYRKKQPKTVQLRMAIDGCSFDEGELVRDVPVSFNPELRQYEWRTVVEEYVETPNPEGAADRHDPMAALEGA
>NC_019958.1|WP_015298012.1|96529_97660_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MFVDTHILQSVPPSNINRDDTGSPKTAIFGGAQRARVSSQAWKRATRSRFNATLDKSNIGCRTKRVVEKLSEQIHQLDGGLSTEDARRLASQTLTAAGITLTTPKPPKDAPKGFQPIELTSSLLFVSAGQYAKLAELAVAAHQASAKVARKVAKQAINSEHSFDVALFGRMVADDLNLNVDAAAQVAHAISVQAVEPEFDYFAAVDDMQERDQQAGAGMIGTIEFNSSTLYRYATVNVPGLRQNLGDSTAAARAVAAFVDSFILSMPTGKLSTFANRTVPEAILVSVRSDQPINLVGAFENPIQPRADGSVVAKAAAALADRHRAVADVYGPPVKTWVASLGDAAAPLEAVGDRVDMRTLTQQLEQSILEYLGAPA
>NC_019958.1|WP_015298013.1|97687_98338_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTAETSVSEPRASLDDQLRTAVLRVVADLQRRYFSNPRDTYVAARLAKLRRAGPSAPGSDPDVWADTIGALPERLCQGTHTENEPTDFERAAHEAITLYALHQQSRSTGVHRRGISLGCAVRRLARATGRDEAIRRRFQVVATAGTSAAVVHHLRALIMLMRSENIPLDYAQLAVDLRQLRDGSRADQVRLRWGRDFHRATTGDPENPAPDDLPAH
>NC_019958.1|WP_015298014.1|98334_99975_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTTLGDTFNLIDQPWIPVRSIDGRSREVSIGELFTEAPVIRAVGGDIPTQAFAIQRVLLAIVRRAIDWSEDPVRRWGELWRAGEFPRAEVESYLRTVHHRFDLLDTVAPFYQVADLQTAAGVFKPVDLLIADRPTGAKYFTTRAGAGAQRLSLAEAARWVVHCQAFDPSGIKTGDLRDPRTKDGKGYPIGIAWCGQLGGVLLEGSNLFETMMLNTVLRNTNGTATWPSDVPVWERTHPEVGERDDTAPLGPCDVLTWQSRRIKLQHDGKFVNGAIVGNGDRISPHNRQDIEFCTAWRHSEPQSKQFGETRYLPAQFDPDRSLWRGIEGLLADIPSQDGKPAPRLAPGVVNWIDYLVAEKLLDRSVRIRPHALALQYTNAWTPKPNGVVASIDDALQIKVALIGRRSQPRVFANRAVQAANDSATALANLAGNLAEAAGGNAQLRKATARAAAYFALDAPYRQWVADLDEDTDLEEHCAQWQRQVREIIGANGRDLISSAGKSAWKGRMLGQRLLDSSLASKYFWSALRSALPAAFDTEPPQEGEQQ
>NC_019958.1|WP_015298015.1|99971_102716_-|CRISPR-associated-helicase/endonuclease-Cas3
MTAVGISSLSEQVRSAWAKHRRADDCSLSLVRHCEDAAAVAAHLWDDWVPRSTREYLSAGRSIDEVRVLACWLAGVHDVGKLSPAFAIQVPSLAGKMRDCGLRMKLSVPSRQDTPHSVVSHRAIENYLMGRGWSGWTAATYAVIAGGHHGVPPSRGQLAFDEDVSHYGRAEWTIARNELLDHITAVVGAEAHLGSWAEVPMTPQQQVLWTGFVIMADWIASSDHFPLSDCRGSESTAAAAWAALGLPPRWMPSQPARVDELMRDRFDLPEGAHPNSVQRTVVDAVRSMAEPGLVVLEAPMGVGKTEAALMAAECLAARFGQGGAFLALPTMATSNAMFTRVLRWIQAQESVPVASVVLSHGKATLEDSYRGLLRTNQFHELGRDAVDDENSCRTEVIAHSWLSGRKKGLLADFAVGTIDQLLLAGLKARHLALRHLALVNKVVIVDEVHAADTYMMQYLVRVLEWLGAYRVPVVLMSATLPSSQRLALVEAYESGRGWAGCSAGLEDNVIRYPVVTVVDGQRRAVCAEWDGATTQVELERLDDDVESLIDRLKQLLDSGGCVGIVRNTVGRAQQTARLLESHFPGEVVLLHSRFVAQHRADLESILVSELGPRGNRPVRRIVVGTQVIEQSLDVDFDLLISDLAPIDLLFQRVGRLHRHPRERPGNLTTPRLILTGVQDWAADPPRPVAESARIYSEFHLLRALLVLTGRSHVTLPRDIAALVEAAYGEGLDVPASWQHQLTSAKHATDKHVANLEDRARTWRIRQPQREATLVDWLAENVGEVDDARGQAKVRDTDEGIDVILTQRIGDEVHLLQRCSGGAIATDVCPDDADARRALTGTIRLPKTLTHLGIADKTIDSLKRRMYKGWQGSKWLAGELVVELDEDLRADVMGYRIHYDDIEGLVVVGRDGAHT
>NC_019958.1|WP_041316003.1|102881_103238_-|hypothetical-protein
MKVKRMIDFVATTVDAELILAQERPGSPFVATLSRTETRWYADGYRESVDAVIATCTLRAPLPVVFEMVNEWLLAEHQHAVLPLSWQFDSTDTDNAVAFNGRVAPAQLAHHVESAQSA
>NC_019958.1|WP_015298017.1|103411_103675_+|hypothetical-protein
MDPANQAVRDALNELSRIQTIFEHETDGHQLLTTLADLREVRKQLDTAIRLAAARLARTHGLRPRAIADALDVDKSTVTRWISATKH
>NC_019958.1|WP_015298019.1|104106_104577_-|hypothetical-protein
MRRLVVFACGVAMVVVALKQPWLIASTMADGGLQMTGAGAWLVRGADAHATGWPLQWPAVAGGILVVIGSLTSRVFSYGLRVLSGSIVTAGTALVALVATEKASGIPPTQLFGVALETGTAPKALLALAVVAVVVTWSTPVPVDQGTEVDQVSPEV
>NC_019958.1|WP_015298020.1|104652_105384_-|hypothetical-protein
MTRLKNSPTISAVLTAIAVVFASPAAAAPPLPPSPAITPGVGLVVSNADDTGGDTCTGGWLAHDASGQPVMFTAGHCDMGGRVSMKWTISGAYETIGSFTRSVNEGKGAEDSDIALIALDNGAIPGDSRVLDRRPVEGATTDVKVGDVLCKYGNATQRQCGPVVAAPTASKVQFAAHGEPGDSGGPVYLIQPDGDAVAVGITLGRNASGEEVAELVQPWLQKWQLTLDTSKPVVGAQPVGYGK
>NC_019958.1|WP_157681621.1|107409_108057_+|hypothetical-protein
MDGTVLQPRLRYIVATSDGLSLIPLGIATPAGVELLSQQRVRSSFVSDWSGNDHPGRKLAALANEYSQEVGRLVYLVSTDSDAAQSPGRSGEVTEMYQTAAETTGLIRDNRATSAVAPRTEIVRRLPIREEQAQEALAAFGAAWGFHDATADDLNSSRAMLWAARWGRARSRSDDYPALLATYLYVEGLEALRAGRLDEAAYSASSMLSVEPLDA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019958_1	1.1\|94643\|35\|NC_019958\|CRISPRCasFinder	94643-94677	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94643-94677	0	1.0
NC_019958_1	1.2\|94704\|36\|NC_019958\|CRISPRCasFinder	94704-94739	36	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94704-94739	0	1.0
NC_019958_1	1.3\|94766\|35\|NC_019958\|CRISPRCasFinder	94766-94800	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94766-94800	0	1.0
NC_019958_1	1.4\|94827\|35\|NC_019958\|CRISPRCasFinder	94827-94861	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94827-94861	0	1.0
NC_019958_1	1.5\|94888\|35\|NC_019958\|CRISPRCasFinder	94888-94922	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94888-94922	0	1.0
NC_019958_1	1.6\|94949\|35\|NC_019958\|CRISPRCasFinder	94949-94983	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94949-94983	0	1.0
NC_019958_1	1.7\|95010\|35\|NC_019958\|CRISPRCasFinder	95010-95044	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	95010-95044	0	1.0
NC_019958_1	1.8\|95071\|35\|NC_019958\|CRISPRCasFinder	95071-95105	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	95071-95105	0	1.0
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94646-94677	0	1.0
NC_019958_1	1.10\|94707\|33\|NC_019958\|CRT	94707-94739	33	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94707-94739	0	1.0
NC_019958_1	1.11\|94769\|32\|NC_019958\|CRT	94769-94800	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94769-94800	0	1.0
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94830-94861	0	1.0
NC_019958_1	1.13\|94891\|32\|NC_019958\|CRT	94891-94922	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94891-94922	0	1.0
NC_019958_1	1.14\|94952\|32\|NC_019958\|CRT	94952-94983	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	94952-94983	0	1.0
NC_019958_1	1.15\|95013\|32\|NC_019958\|CRT	95013-95044	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	95013-95044	0	1.0
NC_019958_1	1.16\|95074\|32\|NC_019958\|CRT	95074-95105	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	95074-95105	0	1.0
NC_019958_1	1.13\|94891\|32\|NC_019958\|CRT	94891-94922	32	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	105430-105461	5	0.844
NC_019958_1	1.14\|94952\|32\|NC_019958\|CRT	94952-94983	32	NZ_CP044080	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence	186827-186858	6	0.812
NC_019958_1	1.5\|94888\|35\|NC_019958\|CRISPRCasFinder	94888-94922	35	NC_019958	Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence	105430-105464	7	0.8
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MN369761	Mycobacterium phage Malthus, complete genome	15259-15290	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MK224497	Mycobacterium phage Henu3, complete genome	43628-43659	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	KJ944841	Mycobacterium phage Cheetobro, complete genome	15346-15377	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	AP018469	Mycobacterium phage Y10 DNA, complete genome, note: sample1	15335-15366	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	KY087992	Mycobacterium phage Mitti, complete genome	15259-15290	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MF140402	Mycobacterium phage Chancellor, complete genome	15346-15377	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MK524485	Mycobacterium phage MissDaisy, complete genome	15110-15141	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	AP018470	Mycobacterium phage Y2 DNA, complete genome	15335-15366	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	KT361920	Mycobacterium phage Slarp, complete genome	15346-15377	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MH926058	Mycobacterium phage Reptar3000, complete genome	15088-15119	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MT310882	Mycobacterium phage JF1, complete genome	15335-15366	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	AP018471	Mycobacterium phage Y10 DNA, complete genome, note: sample2	15335-15366	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MH051258	Mycobacterium phage SamScheppers, complete genome	14862-14893	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MK524488	Mycobacterium phage Patt, complete genome	15086-15117	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	MF140435	Mycobacterium phage Wintermute, complete genome	15335-15366	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	NC_027365	Mycobacterium virus Fionnbarth, complete genome	15336-15367	7	0.781
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	728716-728747	8	0.75
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1084355-1084386	8	0.75
NC_019958_1	1.10\|94707\|33\|NC_019958\|CRT	94707-94739	33	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	586061-586093	8	0.758
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	360174-360205	8	0.75
NC_019958_1	1.13\|94891\|32\|NC_019958\|CRT	94891-94922	32	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	269145-269176	8	0.75
NC_019958_1	1.14\|94952\|32\|NC_019958\|CRT	94952-94983	32	NZ_CP030360	Salinibacter ruber strain SP38 plasmid pSR76, complete sequence	38133-38164	8	0.75
NC_019958_1	1.15\|95013\|32\|NC_019958\|CRT	95013-95044	32	NZ_CP017300	Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence	165913-165944	8	0.75
NC_019958_1	1.15\|95013\|32\|NC_019958\|CRT	95013-95044	32	NZ_CP034154	Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence	122967-122998	8	0.75
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	MK524505	Gordonia phage Dogfish, complete genome	12904-12935	9	0.719
NC_019958_1	1.13\|94891\|32\|NC_019958\|CRT	94891-94922	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	32606-32637	9	0.719
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	NZ_CP030355	Novosphingobium sp. P6W plasmid pP6W2, complete sequence	138953-138984	10	0.688
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	NC_009670	Ochrobactrum anthropi ATCC 49188 plasmid pOANT02, complete sequence	7126-7157	10	0.688
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	331791-331822	10	0.688
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	330171-330202	10	0.688
NC_019958_1	1.12\|94830\|32\|NC_019958\|CRT	94830-94861	32	MK814750	Gordonia phage Ewald, complete genome	13166-13197	10	0.688
NC_019958_1	1.14\|94952\|32\|NC_019958\|CRT	94952-94983	32	NZ_CP030367	Salinibacter ruber strain M1 plasmid pSR61, complete sequence	29361-29392	10	0.688
NC_019958_1	1.16\|95074\|32\|NC_019958\|CRT	95074-95105	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	16348-16379	10	0.688
NC_019958_1	1.16\|95074\|32\|NC_019958\|CRT	95074-95105	32	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	169315-169346	10	0.688
NC_019958_1	1.5\|94888\|35\|NC_019958\|CRISPRCasFinder	94888-94922	35	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	269145-269179	11	0.686
NC_019958_1	1.9\|94646\|32\|NC_019958\|CRT	94646-94677	32	NZ_CP025548	Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence	87977-88008	11	0.656
NC_019958_1	1.16\|95074\|32\|NC_019958\|CRT	95074-95105	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	6010802-6010833	11	0.656

1. spacer 1.1|94643|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gatagtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
gatagtgccgccggtccgctcagcaacgcgatcag	Protospacer
***********************************

2. spacer 1.2|94704|36|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacaaacgcaccgcctccgaaccgagctggtaactc	CRISPR spacer
gacaaacgcaccgcctccgaaccgagctggtaactc	Protospacer
************************************

3. spacer 1.3|94766|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacgaacgccttacccatcacagtcgcgcgcgatc	CRISPR spacer
gacgaacgccttacccatcacagtcgcgcgcgatc	Protospacer
***********************************

4. spacer 1.4|94827|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gactgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
gactgtgccgccgatccactcagcgacgcgatcag	Protospacer
***********************************

5. spacer 1.5|94888|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacactatgccgggaacgcgcggccagatccactt	CRISPR spacer
gacactatgccgggaacgcgcggccagatccactt	Protospacer
***********************************

6. spacer 1.6|94949|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacgtagccactgccgacgggctgtcccacatccc	CRISPR spacer
gacgtagccactgccgacgggctgtcccacatccc	Protospacer
***********************************

7. spacer 1.7|95010|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacgagaccgtcaggctgcgcgggtattcctcccc	CRISPR spacer
gacgagaccgtcaggctgcgcgggtattcctcccc	Protospacer
***********************************

8. spacer 1.8|95071|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacgacggcgcgccaccatgagacgccgccggatt	CRISPR spacer
gacgacggcgcgccaccatgagacgccgccggatt	Protospacer
***********************************

9. spacer 1.9|94646|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
agtgccgccggtccgctcagcaacgcgatcag	Protospacer
********************************

10. spacer 1.10|94707|33|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

aaacgcaccgcctccgaaccgagctggtaactc	CRISPR spacer
aaacgcaccgcctccgaaccgagctggtaactc	Protospacer
*********************************

11. spacer 1.11|94769|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gaacgccttacccatcacagtcgcgcgcgatc	CRISPR spacer
gaacgccttacccatcacagtcgcgcgcgatc	Protospacer
********************************

12. spacer 1.12|94830|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
tgtgccgccgatccactcagcgacgcgatcag	Protospacer
********************************

13. spacer 1.13|94891|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

actatgccgggaacgcgcggccagatccactt	CRISPR spacer
actatgccgggaacgcgcggccagatccactt	Protospacer
********************************

14. spacer 1.14|94952|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gtagccactgccgacgggctgtcccacatccc	CRISPR spacer
gtagccactgccgacgggctgtcccacatccc	Protospacer
********************************

15. spacer 1.15|95013|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gagaccgtcaggctgcgcgggtattcctcccc	CRISPR spacer
gagaccgtcaggctgcgcgggtattcctcccc	Protospacer
********************************

16. spacer 1.16|95074|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 0, identity: 1.0

gacggcgcgccaccatgagacgccgccggatt	CRISPR spacer
gacggcgcgccaccatgagacgccgccggatt	Protospacer
********************************

17. spacer 1.13|94891|32|NC_019958|CRT matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 5, identity: 0.844

actatgccgggaacgcgcggccagatccactt	CRISPR spacer
cctatgccgggaacgcgcggccagatatgctg	Protospacer
 ************************* ..**

18. spacer 1.14|94952|32|NC_019958|CRT matches to NZ_CP044080 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

gtagccactgccgacgggctgtcccacatccc	CRISPR spacer
gtcccctgtgccggcgggctgtcccacaaccc	Protospacer
**  **  *****.************** ***

19. spacer 1.5|94888|35|NC_019958|CRISPRCasFinder matches to NC_019958 (Mycobacterium sp. JS623 plasmid pMYCSM02, complete sequence) position: , mismatch: 7, identity: 0.8

gacactatgccgggaacgcgcggccagatccactt	CRISPR spacer
gcacctatgccgggaacgcgcggccagatatgctg	Protospacer
*   ************************* ..**

20. spacer 1.9|94646|32|NC_019958|CRT matches to MN369761 (Mycobacterium phage Malthus, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

21. spacer 1.9|94646|32|NC_019958|CRT matches to MK224497 (Mycobacterium phage Henu3, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

22. spacer 1.9|94646|32|NC_019958|CRT matches to KJ944841 (Mycobacterium phage Cheetobro, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

23. spacer 1.9|94646|32|NC_019958|CRT matches to AP018469 (Mycobacterium phage Y10 DNA, complete genome, note: sample1) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

24. spacer 1.9|94646|32|NC_019958|CRT matches to KY087992 (Mycobacterium phage Mitti, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

25. spacer 1.9|94646|32|NC_019958|CRT matches to MF140402 (Mycobacterium phage Chancellor, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

26. spacer 1.9|94646|32|NC_019958|CRT matches to MK524485 (Mycobacterium phage MissDaisy, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

27. spacer 1.9|94646|32|NC_019958|CRT matches to AP018470 (Mycobacterium phage Y2 DNA, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

28. spacer 1.9|94646|32|NC_019958|CRT matches to KT361920 (Mycobacterium phage Slarp, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

29. spacer 1.9|94646|32|NC_019958|CRT matches to MH926058 (Mycobacterium phage Reptar3000, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

30. spacer 1.9|94646|32|NC_019958|CRT matches to MT310882 (Mycobacterium phage JF1, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

31. spacer 1.9|94646|32|NC_019958|CRT matches to AP018471 (Mycobacterium phage Y10 DNA, complete genome, note: sample2) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

32. spacer 1.9|94646|32|NC_019958|CRT matches to MH051258 (Mycobacterium phage SamScheppers, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

33. spacer 1.9|94646|32|NC_019958|CRT matches to MK524488 (Mycobacterium phage Patt, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

34. spacer 1.9|94646|32|NC_019958|CRT matches to MF140435 (Mycobacterium phage Wintermute, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

35. spacer 1.9|94646|32|NC_019958|CRT matches to NC_027365 (Mycobacterium virus Fionnbarth, complete genome) position: , mismatch: 7, identity: 0.781

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
actgcgttcggtgcgctcggcaacgcgatcaa	Protospacer
* ***  .**** *****.************.

36. spacer 1.9|94646|32|NC_019958|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
tcttccgccggtccgcccagcaccgcgccctg	Protospacer
  * ************.***** **** .* *

37. spacer 1.9|94646|32|NC_019958|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
tcttccgccggtccgcccagcaccgcgccctg	Protospacer
  * ************.***** **** .* *

38. spacer 1.10|94707|33|NC_019958|CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 8, identity: 0.758

aaacgcaccgcctccgaaccgagctggtaactc	CRISPR spacer
caacgcaccggctccgaaccgtgctcggcacgg	Protospacer
 ********* ********** *** *  **

39. spacer 1.12|94830|32|NC_019958|CRT matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 8, identity: 0.75

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
tacgatggcgatcccctctgcgacgcgatcac	Protospacer
*..* .* ****** *** ************

40. spacer 1.13|94891|32|NC_019958|CRT matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 8, identity: 0.75

actatgccgggaacgcgcggccagatccactt	CRISPR spacer
tcaatgcctggaacgcgcggcccgatccctac	Protospacer
 * ***** ************* ***** . .

41. spacer 1.14|94952|32|NC_019958|CRT matches to NZ_CP030360 (Salinibacter ruber strain SP38 plasmid pSR76, complete sequence) position: , mismatch: 8, identity: 0.75

gtagcc----actgccgacgggctgtcccacatccc	CRISPR spacer
----cctcaaactgctggcgggctgtcccacatcgg	Protospacer
    **    *****.*.****************

42. spacer 1.15|95013|32|NC_019958|CRT matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 8, identity: 0.75

gagaccgtcaggctgcgcgggtattcctcccc	CRISPR spacer
ggaaccgtcacgctgcgcggatattcccctta	Protospacer
*..******* *********.******.*..

43. spacer 1.15|95013|32|NC_019958|CRT matches to NZ_CP034154 (Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gagaccgtcaggctgcgcgggtattcctcccc	CRISPR spacer
ggaaccgtcacgctgcgcggatattcccctta	Protospacer
*..******* *********.******.*..

44. spacer 1.12|94830|32|NC_019958|CRT matches to MK524505 (Gordonia phage Dogfish, complete genome) position: , mismatch: 9, identity: 0.719

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
ctggccgccgatccactcggcgacgccagtga	Protospacer
.  ***************.******* * ...

45. spacer 1.13|94891|32|NC_019958|CRT matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 9, identity: 0.719

actatgccgggaacgcgcggccagatccactt	CRISPR spacer
aggctgccgggaacgcgccgcccgatcctagg	Protospacer
*   ************** *** *****

46. spacer 1.9|94646|32|NC_019958|CRT matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 10, identity: 0.688

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
gtcgaagccggtccggtcagcagcgcgatgcc	Protospacer
. .*  ********* ******.******

47. spacer 1.12|94830|32|NC_019958|CRT matches to NC_009670 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT02, complete sequence) position: , mismatch: 10, identity: 0.688

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
gacatagccgatcaactcggcgacgcgatcgc	Protospacer
 .... ******* ****.***********.

48. spacer 1.12|94830|32|NC_019958|CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.688

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
gatgccgccgatccactcaacaacggcaaagc	Protospacer
 .*****************.*.***  *  .

49. spacer 1.12|94830|32|NC_019958|CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 10, identity: 0.688

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
gatgccgccgatccactcaacaacggcaaagc	Protospacer
 .*****************.*.***  *  .

50. spacer 1.12|94830|32|NC_019958|CRT matches to MK814750 (Gordonia phage Ewald, complete genome) position: , mismatch: 10, identity: 0.688

tgtgccgccgatccactcagcgacgcgatcag	CRISPR spacer
ctggccgccgatccagtcggcgacgccagtga	Protospacer
.  ************ **.******* * ...

51. spacer 1.14|94952|32|NC_019958|CRT matches to NZ_CP030367 (Salinibacter ruber strain M1 plasmid pSR61, complete sequence) position: , mismatch: 10, identity: 0.688

gtagccactgccgacgggctgtcccacatccc	CRISPR spacer
tctcaaactgctgccgggctgtcccacattcg	Protospacer
 .    *****.* ***************.*

52. spacer 1.16|95074|32|NC_019958|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

gacggcgcgccaccatgagacgccgccggatt	CRISPR spacer
gggtgcgcgccgccgtgagacgccgccaccgc	Protospacer
*.  *******.**.************.   .

53. spacer 1.16|95074|32|NC_019958|CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gacggcgcgccaccatgagacgccgccggatt	CRISPR spacer
agctgcgcgccgccatgaggcgccgccacgcc	Protospacer
..* *******.*******.*******. ...

54. spacer 1.5|94888|35|NC_019958|CRISPRCasFinder matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 11, identity: 0.686

gacactatgccgggaacgcgcggccagatccactt	CRISPR spacer
tggtcaatgcctggaacgcgcggcccgatccctac	Protospacer
 .  * ***** ************* ***** . .

55. spacer 1.9|94646|32|NC_019958|CRT matches to NZ_CP025548 (Mycobacterium paragordonae strain 49061 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

agtgccgccggtccgctcagcaacgcgatcag	CRISPR spacer
gtggccgccgggccgctcagcgacgccgatgc	Protospacer
.  ******** *********.**** . ..

56. spacer 1.16|95074|32|NC_019958|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.656

gacggcgcgccaccatgagacgccgccggatt	CRISPR spacer
cggtgcgcgccgccgtgagacgccgccaccgc	Protospacer
 .  *******.**.************.   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_019959

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_019959_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019959_1

39563-39752

TypeV-U4

Consensus_repeat	Method
GACTCACCCGTGTGCGCGTGGGGCGCAC	CRISPRCasFinder

2 spacers

c2c9_V-U4

The CRISPR arrays of NC_019959_1

>merge|NC_019959|1|39563-39752|CRISPRCasFinder
GACTCACCCGTGTGCGCGTGGGGCGCACGACGCCTTGTAGGCAGGGGCAGGGGCAAGCAAGCAATGTCGCCAAGCAGCGGGACTCACCCGTGTGCGCGTAGGGCGCACCACGATCAGCGCCAGCCGGCGGCCGGCCGGCCGGGCCGATCGTGATACGGGTTCGACTCACCCGTGTGCGCGGGCGCGTGGG

>NC_019959|1|1|39563-39752|CRISPRCasFinder
GACTCACCCGTGTGCGCGTGGGGCGCAC	GACGCCTTGTAGGCAGGGGCAGGGGCAAGCAAGCAATGTCGCCAAGCAGCGG
GACTCACCCGTGTGCGCGTAGGGCGCAC	CACGATCAGCGCCAGCCGGCGGCCGGCCGGCCGGGCCGATCGTGATACGGGTTC
GACTCACCCGTGTGCGCGGGCGCGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019959.1\|WP_015298176.1\|45302_45683_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NC_019959.1\|WP_157681643.1\|34773_37143_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NC_019959.1\|WP_083906460.1\|42976_43654_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_019959.1\|WP_015298161.1\|34176_34761_-\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298172.1\|43770_44196_-\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_157681637.1\|39759_40212_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|284650
NC_019959.1\|WP_041316259.1\|45730_46492_-\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298160.1\|33796_34171_-\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298168.1\|41505_41763_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019959.1\|WP_041316218.1\|31472_32675_+\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298159.1\|33291_33555_+\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298158.1\|33060_33291_+\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_157681635.1\|32699_32984_-\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_157681636.1\|39109_39538_+\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_041316222.1\|45102_45306_+\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298173.1\|44209_44686_-\|DUF2580-domain-containing-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298174.1\|44803_45055_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226847
NC_019959.1\|WP_015298164.1\|37943_38552_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_019959.1\|WP_015298171.1\|42565_42919_-\|hypothetical-protein	unknown	unknown	unknown
NC_019959.1\|WP_015298165.1\|38587_38947_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_019959.1\|WP_015298168.1\|41505_41763_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.71496e-05
NC_019959.1\|WP_157681643.1\|34773_37143_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	7.98366e-09
NC_019959.1\|WP_083906460.1\|42976_43654_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.44496e-82
NC_019959.1\|WP_015298176.1\|45302_45683_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	1.5257e-17
NC_019959.1\|WP_157681637.1\|39759_40212_-\|transposase	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	2.53392e-22
NC_019959.1\|WP_015298174.1\|44803_45055_-\|hypothetical-protein	gnl\|CDD\|226847	COG4423, COG4423, Uncharacterized protein conserved in bacteria [Function unknown].	1.85018e-06
NC_019959.1\|WP_015298164.1\|37943_38552_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.00234997

>NC_019959.1|WP_157681636.1|39109_39538_+|hypothetical-protein
MGMHLRVAAAALGVLVIAGCSTSPSHPAPWPGKFFSNTHTIDFYDQTYNIADVKILCSQDDAGLKVVITAPDGTQVTAVRPKDGSQRSNVDVVGGDHAAQTLVDGAVWKSQDGEWGFEGNPDDTESHSVFYLHDGAAICPAR
>NC_019959.1|WP_015298165.1|38587_38947_-|hypothetical-protein
MGAKSKLDIETDQLHKAAAKAGQTLAASVIPTITPPIPAAMSQLDIALAAVSGKAELLRSKVDATDSTWATKQSGALAEGPTVLQSQDKEAVPTYEQPVTTFPMPGVNPMQPPGGTMPA
>NC_019959.1|WP_015298164.1|37943_38552_-|hypothetical-protein
MDVSIAPPTAPPYPYPPAPQKPRRRWPALAAAAAVGAVVAGSVATLITFAVTNPASTSNTVSSAPSTVTETAAPAAAPAPLPVAEADAQTCRAWKNTDTLVTAGAAAMNAIPAGMNITDPAVQNNPAWKASVARAGDLFGQAADTFEAGIAAGANPTLMGVADTTVSALRTLSEAYKSVDPASGNAVAVFKASQQAVDWLCQ
>NC_019959.1|WP_157681643.1|34773_37143_-|hypothetical-protein
MDWSGYAMTYSQKANELFQQLDAQMDIKQILAPMSGAFIEAARGLEAGRETALQNRIEAYRQISKKAHWAANELQSTKQDLAEIVHQAEENVKTSRDNAEKAKDAALKAAPLVAPAAIAAIEAQLEASIAAIVATAKADAHARDMQGAATVTALSTDIAEWKDPYANHMLPEAGGLPGIGAPAAPPAMPLPQTPGTSAKPVDYTVKSQNTPQAANTDAPQKSATTDPTSNSDRQIQQTAFKQPDKIDPSDLGKEKQAAPMSPPSTSAPSTGSSGGGSSNPASSIGQIFKPTSSGSSSPASSSSPASSSASSPSSMAQSGQLANANGANAANGAGAANGAGAASAAAGRGSGVAGLSSGIAESSARMATGAVNSAANIASSATNVGSSIAQNVAQAAAQAPAAAAPAAATSPASFGGSGAAAPPMAMMAPPAVGGGAAPVTPVTSAGPPAAAVPTTPAAAATPVSGAAPSAAAAGGASVTPVPVQGPSIRGIGADGASGDIIFDQAMDAGREVITAMIAQTLATGYVEIHYAASVIWDRGGTISAWLATSEGASYIPLGVRIPQDVRLAVTDPIVGHQLWNAAAEAGGSNPLETVVRQAMAREQAAPGSRVLAVASSLPLGQVIDWAGEVGARPVSINAKEVARATAVDPTASHRCAVAMPWEWRQANAFTDQDMLKVAARHSQMAASVAQMSGQATDRVIDLFEARKPIDDALWADVAKQRFMAMIEYQSAVSNAGAGGADSPARLLAQARAAEVVLCLRNYDTVDGCADLLYASRLAGAPLNPAAAVA
>NC_019959.1|WP_015298161.1|34176_34761_-|hypothetical-protein
MDTIRWYIKGLLDQPYAPTYDYFTVPTVTGTGWLGMVQIAAVNHYNAVNGALYSDHMAARQSWIECRDRVLGWLRLLDAGNDIDWAAEELPKVPEVRGDGRESTTTIYDSLDEIAVLEGRLNADRVSLKRAIAFYLGAVDNAVQKFVEFIDCEDDPAEQRRFAEHTVSIIDQFTRRIEFIQQACPAGSGQRPFA
>NC_019959.1|WP_015298160.1|33796_34171_-|hypothetical-protein
MTGAALSTPNLLFYFPQESVASLEDRWKDWVVRDATVCTRKDQSQDAPGVLFELLRTHIQLRPALTEAVAFAELHLDRTRSAGTTLIFYPFLPWPWPQAIGAHLAAGDPDTLWLMPRALTVDDF
>NC_019959.1|WP_015298159.1|33291_33555_+|hypothetical-protein
MSAEADYSEVADAQLDELEQGPDVDLYNAVLDTIELIFQLPGQAHALSTAITTNEGIRLRLPVIGHPPYKVFWSTEGPRIEAIFPHP
>NC_019959.1|WP_015298158.1|33060_33291_+|hypothetical-protein
MTEPALIETDARSRAVLPGQPNQRFLMRVNEDGSILLQPARIVTDAQQEYDSNPELRDLLARATASPTVRRTRQRR
>NC_019959.1|WP_157681635.1|32699_32984_-|hypothetical-protein
MTNADDTPAVLLPVATERVDPWENSDDEGRFRYFLGTPRGEAATVRLAGFQRADGTLYDLALSVDAQEPLDAAAAEQLIEDLGTALEELRRLSR
>NC_019959.1|WP_041316218.1|31472_32675_+|hypothetical-protein
MTSPPPDDELTRFFAVPPALARAAEPSRESVYIGNAEKNLYEARERRLAHLRDGVTRRAIDRATERLTALAHPELDYIAIRSPFIYGPQQVATPDAPDDLTLLPPPLSRVLRRKNQYAIALYLTLLFVQQMLAFRAAHGDPGVVGPRRRKAVYNVDGAPSEASLIGLPSNDRRNQRRVFNRALDALQSAELIDYGPDRQRYATYTLNAEDGSGHTYTVPAGEPDSAAYLCLPAAFFTAGWPMILTPSELATFLAICHYADRILPRNPTSETPRQIYLAKSLRDKHFGLSDEAYESIHTLAEFRLIDVHDPVEGRRRGRISPERTGGKRPDPYLLDPIVLGGFPSTDRAFNLDALKQPAIETAIERLNWPIPRYAMWSGSSRKRDDARAARAAKQNTKQAT
>NC_019959.1|WP_157681637.1|39759_40212_-|transposase
MRAKAGLNRAILDAAPGELRHQLNYKARWYASTIAVCDRWYPSSQTCSTCGARTKLRLSQRAYRCAECGLDLDRDVNAAINIATYAVAVTPDTEETQNARRGRAPAPTSVGRRRQVTDAGRPHHHGAATSAEQSTDHPKTADQRPLTLVS
>NC_019959.1|WP_015298168.1|41505_41763_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MSGFSGEKCGAAKLSSVATENIDHLRWTLDWVINEVARTGEEVIVLDRDGTTERAVIISMADYERLHEHADDVEARQLRAAGGGG
>NC_019959.1|WP_015298171.1|42565_42919_-|hypothetical-protein
MAIAFHWSPSTRRASIRRRGLIIGATPAVNGVEDDHRNPWISLAPTPALAWWMSGEALEGGGFAAEDPVWDLWEVNLAGIEHTTGTPSYPEITVPSCIPPDRLTWIGTRTFGVGDAA
>NC_019959.1|WP_083906460.1|42976_43654_-|phosphoserine-phosphatase-SerB
MHTHAEHDTARLIMFDVDSTLIQGEIIEMLAAKAGTETHVRNITEAAMRGELDFAQALHARVATLAGLDAAVLDDVAANLTLTPGAHTTIRTLQRQGYHCGVATGGFAQVIDGLAAHLELDYAKANHLEVVDGKLTGRTTGPIVDRAAKAAALCEFAAQTNVPIARTVAVGDGANDIDMLTTAGLGIAFNAKPALQAVADIVVTAPNLDAVLGALNTAADGDEAA
>NC_019959.1|WP_015298172.1|43770_44196_-|hypothetical-protein
MTTENPAGEDLTALYERYATHFRPVITRTDDNRWRAQLPGVSWHVTADTEQAAGDAITTEALRRLDAGEPEPQPPHDLLARHLQNPIPGVYAMDRELFLHVRTHAGNTATQQAFEEAERRRAAGRSYTKSDYIAENSSPAE
>NC_019959.1|WP_015298173.1|44209_44686_-|DUF2580-domain-containing-protein
MAHLDVNPADLLRAADNYAELQLRAAAIGPKAVEEVQRIIATHGPMGYPLAVGVVAGLARRQAALDAKAANFGQYSQRFTEHAAAYRDQDLQGARDYAAPAATMLDLGGPGHIPPPEGRVICTEINAGGFGCSEFLPGGMIFHWLSPVDLTGHWPDFP
>NC_019959.1|WP_015298174.1|44803_45055_-|hypothetical-protein
MPLTVEDEEVIRLADDLMQRLHLPSRIDAIRYALQAQINLTQSRTEDLLNVMATEVWPLLNDGHPITKQDREQILDYDPGAGA
>NC_019959.1|WP_041316222.1|45102_45306_+|hypothetical-protein
MPALNVPFDDTEMEALRAAAQQSDQSLKDYVHDAAMQRADRHKEQVAAAAKLVAQRSAELNRRLRDE
>NC_019959.1|WP_015298176.1|45302_45683_+|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MTTFLDRDDVLCAAAAALDGLPEIADYGLLDAAVARPSATVFGLDAYPSLLTKAAALLHSLARNHALVDGNKRTAWAAAWTFLTINGVELSATYDVDAAEQLMLDVATGVQESVDEIASALEGFAA
>NC_019959.1|WP_041316259.1|45730_46492_-|hypothetical-protein
MIRTIEHDLCGQFVGGRDQYAPFPGLTHAAFPAIGNDSTPQPRTPGEAALFLHQRVPNPLIAARAATVAGGYPVAHLTYVIKPTNRQHPLVDEWLTRLRPASTSRRDEIGYQLALSMLPVELGPDDHLAPTGFHVDPDWPDCWIVSLGETVIVTCGVSVPARGVLRQAYLAEGAAFFRDSLGGVWPLPCKRYRPTDTDEDLAQTLTRLLVDAGADVESPDAAVETNLLLWQQIQASPLPIAIHADEVMPHRQA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_019959_1	1.1\|39591\|52\|NC_019959\|CRISPRCasFinder	39591-39642	52	NC_019959	Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence	39591-39642	0	1.0
NC_019959_1	1.2\|39671\|54\|NC_019959\|CRISPRCasFinder	39671-39724	54	NC_019959	Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence	39671-39724	0	1.0

1. spacer 1.1|39591|52|NC_019959|CRISPRCasFinder matches to NC_019959 (Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence) position: , mismatch: 0, identity: 1.0

gacgccttgtaggcaggggcaggggcaagcaagcaatgtcgccaagcagcgg	CRISPR spacer
gacgccttgtaggcaggggcaggggcaagcaagcaatgtcgccaagcagcgg	Protospacer
****************************************************

2. spacer 1.2|39671|54|NC_019959|CRISPRCasFinder matches to NC_019959 (Mycobacterium sp. JS623 plasmid pMYCSM03, complete sequence) position: , mismatch: 0, identity: 1.0

cacgatcagcgccagccggcggccggccggccgggccgatcgtgatacgggttc	CRISPR spacer
cacgatcagcgccagccggcggccggccggccgggccgatcgtgatacgggttc	Protospacer
******************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019966

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_019958

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_019959

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection