CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019978	Halobacteroides halobius DSM 5150, complete sequence	3 crisprs	RT,cas3,WYL,DEDDh,cas3HD,cas1,cas2,cas4,cas8a4,cas7,cas5,cas6,csa3,cas14j	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019978_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019978_1

15251-15474

Orphan

Consensus_repeat	Method
TTGACAGTGATAAAATAATTTGTTAATATAGTAGATGTCGCTTGAAAAGA	PILER-CR
AATTTGTTAATATAGTAGACGTCGCTTGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_019978_1

>merge|NC_019978|1|15251-15474|PILER-CR,CRISPRCasFinder
TTGACAGTGATAAAATAATTTGTTAATATAGTAGACGTCGCTTGAGAAGAAGATTTATTTTGAGATAAGAAATTAATTTTCTTGACAACAGACATTAAATTTGTTAATATAGTAGATGTCGCTTGAAAAGAGAAATCACTTTCTTGGGACAAGCAAGAAAAAACAGAAAAGGTCTTGACAGTGATAAACTAATTTGTTAATATAGTAAATGTCGCTTAAAAAGA

>NC_019978|1|1|15251-15474|PILER-CR
TTGACAGTGATAAAATAATTTGTTAATATAGTAGACGTCGCTTGAGAAGA	AGATTTATTTTGAGATAAGAAATTAATTTTCTTGACAACAGACATTA
AATTTGTTAATATAGTAGATGTCGCTTGAAAAGAGAAATCACTTTCTTGG	GACAAGCAAGAAAAAACAGAAAAGGTCTTGACAGTGATAAACT
AATTTGTTAATATAGTAAATGTCGCTTAAAAAGA

>NC_019978|1|1|15267-15469|CRISPRCasFinder
AATTTGTTAATATAGTAGACGTCGCTTGA	GAAGAAGATTTATTTTGAGATAAGAAATTAATTTTCTTGACAACAGACATTA
AATTTGTTAATATAGTAGATGTCGCTTGA	AAAGAGAAATCACTTTCTTGGGACAAGCAAGAAAAAACAGAAAAGGTCTTGACAGTGATAAACT
AATTTGTTAATATAGTAAATGTCGCTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_019978.1\|WP_015325783.1\|25574_26858_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NC_019978.1\|WP_015325778.1\|13819_14959_+\|Ger(x)C-family-spore-germination-protein	unknown	unknown	gnl\|CDD\|274338
NC_019978.1\|WP_015325773.1\|5619_7524_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|235542
NC_019978.1\|WP_015325786.1\|29278_30967_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274983
NC_019978.1\|WP_156801242.1\|12768_13836_+\|endospore-germination-permease	unknown	unknown	gnl\|CDD\|281794
NC_019978.1\|WP_015325788.1\|32132_32357_+\|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl\|CDD\|376507
NC_019978.1\|WP_015325784.1\|26965_28390_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|236580
NC_019978.1\|WP_015325781.1\|22801_23968_+\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NC_019978.1\|WP_015325775.1\|10017_11022_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380647
NC_019978.1\|WP_015325782.1\|23967_25554_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NC_019978.1\|WP_015325780.1\|21432_22431_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|132934
NC_019978.1\|WP_015325789.1\|32386_33898_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274983
NC_019978.1\|WP_015325785.1\|29032_29278_+\|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl\|CDD\|224817
NC_019978.1\|WP_015325774.1\|7534_9961_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NC_019978.1\|WP_015325776.1\|11147_12728_+\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NC_019978.1\|WP_015325771.1\|4435_5302_+\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NC_019978.1\|WP_015325772.1\|5339_5597_+\|DUF370-domain-containing-protein	unknown	unknown	gnl\|CDD\|377201
NC_019978.1\|WP_015325787.1\|30969_32118_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|274328
NC_019978.1\|WP_015325779.1\|14942_15167_-\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_015325770.1\|3314_4433_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608

Protein	Function_ID	Function_description	E-value
NC_019978.1\|WP_015325783.1\|25574_26858_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NC_019978.1\|WP_015325778.1\|13819_14959_+\|Ger(x)C-family-spore-germination-protein	gnl\|CDD\|274338	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Sporulation and germination].	1.46789e-85
NC_019978.1\|WP_015325773.1\|5619_7524_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NC_019978.1\|WP_015325786.1\|29278_30967_+\|4Fe-4S-binding-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	1.9955e-72
NC_019978.1\|WP_156801242.1\|12768_13836_+\|endospore-germination-permease	gnl\|CDD\|281794	pfam03845, Spore_permease, Spore germination protein.	1.46647e-43
NC_019978.1\|WP_015325788.1\|32132_32357_+\|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl\|CDD\|376507	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin.	3.45202e-14
NC_019978.1\|WP_015325784.1\|26965_28390_+\|6-phospho-beta-glucosidase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NC_019978.1\|WP_015325781.1\|22801_23968_+\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	1.26279e-152
NC_019978.1\|WP_015325775.1\|10017_11022_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380647	cd19992, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	6.18386e-47
NC_019978.1\|WP_015325782.1\|23967_25554_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NC_019978.1\|WP_015325780.1\|21432_22431_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|132934	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain.	2.03914e-100
NC_019978.1\|WP_015325789.1\|32386_33898_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	0
NC_019978.1\|WP_015325785.1\|29032_29278_+\|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl\|CDD\|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	5.42741e-13
NC_019978.1\|WP_015325774.1\|7534_9961_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NC_019978.1\|WP_015325776.1\|11147_12728_+\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NC_019978.1\|WP_015325771.1\|4435_5302_+\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	3.83205e-23
NC_019978.1\|WP_015325772.1\|5339_5597_+\|DUF370-domain-containing-protein	gnl\|CDD\|377201	pfam04025, DUF370, Domain of unknown function (DUF370). Bacterial domain of unknown function.	9.05397e-09
NC_019978.1\|WP_015325787.1\|30969_32118_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|274328	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs. [Cellular processes, Sporulation and germination].	2.69097e-15
NC_019978.1\|WP_015325770.1\|3314_4433_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	2.54657e-131

>NC_019978.1|WP_015325779.1|14942_15167_-|hypothetical-protein
MLELIITTFNFIYSLYFVILMLITGGLILTLDLYYHQQQKQSKGFLISRTIGLSYIILGGGFFLFNKIIISLDI
>NC_019978.1|WP_015325778.1|13819_14959_+|Ger(x)C-family-spore-germination-protein
MKRIVKILIIILVLNLLTGCWDRRDLEDRVPILAIGIDFAEDKNNQVAKKNKIKITIQAPIPAKMAEKGGDNVTWVVTATGNTIAEAINEMQTKMNQKLFFGHLRIIVFSQELAKTGIRQHLNFFRNLPEIRRLSWLLVAKKSAEDVIKAKPKLESISAVYLMHMLNNGVNMGQIPNLRLGDFYVKLADPGAQPSAVLVKANKDVIDYIGLGVFEGDELVGTLSESEAIYYQRILGVNDKGSLVISDPTTEIDRLTIKIEGVSTYLRPKFENKELVMHINTEVEGKVIEQLNQSNLSKEKVVRRIEKRIEIKLKKEIKKLIRKTQDKFQADIFGVGEYVRAYYPNYWNSIEWHNKYPKLKIDVETQAYIRQVGMIKYRD
>NC_019978.1|WP_156801242.1|12768_13836_+|endospore-germination-permease
MINTIIGVGILILPRAAVKFAHTGGTISFLLAAIFSFINLLIVIKLGLRFPERNIFQYMNQIVGRVLSKFISAMILLYWILFIAIGIRAFSELIVTAILPTTPLEVIMISIILLIAYLARKDIQIIGRVNEVYALFLVIPLLILIIMSLKGGKMVHLFPVFRGHSIANLLKGSISSYFSLLGFEVIFIFIPHITTKDLTSKYAFRAWGITTFLMFIIVIVSIAVFGAFELKNLTWPVFELVKSMQFSSLLFERLEVAFVAIWVIAIFTTAANILYGVSIGTAQTLDLGDNKTLVFPLLPILYLIALAPRNAYELFNIIDIISMVGIIITFVIPSILLVVAIIRGKEGRINNEKDS
>NC_019978.1|WP_015325776.1|11147_12728_+|spore-germination-protein
MVWDKLKERIEGVVGFDGQQLELGLEVENLKKDLQQNKKILKGILGESNDVIIKNFNLTGDKNKPALLVYIDGLVNTGLLETAVIDPLLHKLKLKDLKNKSNQEKIDMIQESILTSSSTEQQGKLSKIIKLILSGESLLLIDRIDKGLIISSKGWEARAVSEPTTESVVRGPRDGFTENLRTNTAHVRRRLRDPGLRIENHTLGRRSQTDVAILYIDDLTNEHILDEAVKRVTNIEIDGVLESGYVEQFIEDSSFSPFPQIQSTERPDKAVANLLEGRVVIIVDGTPFALIIPAVLDQFYQSPEDYYQRFIVASLTRIIRVVGGLISLALPAFYIAITSFHPEMLPTVFMLSIAGGRAQVPLPAYMEAFLMEVIIEILREASVRLPNLIGSTLGIVGALVIGNAAVNAGLVSPSMVIVVALTTLGSFTTPNYNAAIALRILRYILMVLASSFGLYGLMLGLIGITVHLASLKSFGIPYLTPFAPSRISDLKDSIVRFPLWKMVKRPVLMRTEDPDKKESSQEGDTD
>NC_019978.1|WP_015325775.1|10017_11022_-|substrate-binding-domain-containing-protein
MKRLYVILILFTVVTIGCNLNIERINPLTSSSPKKEITIGVSIASTRPNITEIIKKAFIKDRNKQNINILWQKNSDSIKKQKEDVISLIKQEVDIIIIKLLKINQQSKEIIKLINENSIPVVALDKLPPNTKVAAYVSANNFKVGKSQAQYLIDQINKKGNILILKGDKDDKKAQDITAGNKTILKKHKKIKIIKEKWHNNWSEQLANLTVRQTIKENKKIKAILANSDQLALEAIKVLQKEKINKEIIVIGANASKKGTIALIKGDMSSTVDQMPYIRGLNALKVATFIARKEKWNWDGIIKNGKYNIKLITTPIKLINKYNVKRLKKRWQDL
>NC_019978.1|WP_015325774.1|7534_9961_+|DNA-gyrase-subunit-A
MTEINSQQVRQVGIEDEMQEAYLDYAMSVIVGRALPDVKDGLKPVHRRILYAMYDLGLKPNKPHKKSARIVGEVLGKYHPHGDTAVYDAMVRMAQDFSYRYELVDGHGNFGSIDGDSAAAMRYTEAKMAQITNKLLADIKKNTVDFIDNFDGTLQEPEVLPAKIPNLLVNGASGIAVGMSTNIPPHNLSEVIDGVIKLIENPDLEIKELMKTIKGPDFPTGGIIMGRKPIKDYFETGRGKVKLRAKTMIEELDNNKCQIIVNELPYQVNKAKLVEKIAKLVRDDKVEGITNLRDESDRRGMRIVIELKRGVNPQVTLNKLYKHTRLQTTFGIIMLALVDGEPQVLNIKETLNHYINHQKEVITRRTKYDLDKAEARAHILEGFRVALDNIEEVIKIIRGSKNSSIAQERLINRFEFSKKQAKAILDMRLHRLTNLERGKIEDEYSELQEEISYYKSILADESKLLGIIKEELTKTKEKYKDERRTEIQDQGIDLELEDLIEEEEIVVLSTEEGYIKRMTLDTYRKQHRNGKGIIGTKPKEDDLVQDVQIGSTHDYFLFFTNQGYVHKLKGYQIPESSRQARGIPMINLLDLDLNEKVATIFPMSEFNDEEYLFMATKDGIVKKTSIEDFNTSYAKLIALSVDEDDRLVDVELTSGAEEIILATKDGLAIRFSENDVRSMGRTARGVKGIELDANDELIGMEVIRDTGDLLVITEKGYTKRTSIDEYSLQGRGGKGLITLKQTETNGKIIDIKMVDGLEDIVLVSAQGILLRTLVNEISVTGRNTQGVRCMRLNENDQVVGVDTVNFIE
>NC_019978.1|WP_015325773.1|5619_7524_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MREEVNYDADQIQVLEGLEAVRKRPGMYIGSTEKKGLHHLVYEVIDNSIDEALAGYCDEVEIKIEPGEIITVRDNGRGIPVASHAKLDRPAVEVVMTVLHAGGKFEGEGYKVSGGLHGVGVSVVNALSEWLEVRVHRNGKIYYQKYHRGVPDNDLEVIGNTEETGTEIRFKADEEIFESVRYNYDTLSQRFKELAYLNKEVKIKILDEREDLIEDEFKYDGGIISFVEEINEHNTPIHEDVIFFEEQIDNTEVEVAIQYNTDYADKIFTFANNINTHEGGTHLSGFKSALTRTINDYARQNDFLKDDDNNLSGDDIREGIVAIINVRLTDPQFEGQTKTKLGNSEIRGMVDSIVSKGLSTILSENPKLGKQIVKKSIAAAQARKAAKKARELTKRKNALVSTALPGKLADCSSRNAEESEIYIVEGDSAGGSAKQGRDREFQAILPLKGKILNVEKARLDRVLSNKEIKSLITALGTGIADEFDMNNLRYRKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGLVYIAQPPLYKVKKGRREEYVYKDRQLQDLLEEIGKKRTSIQRYKGLGEMNPIQLWKTTMDPENRTLLQVQISDEVIADDVFTKLMGDKVKPRREFIQRHAKEVQNLDV
>NC_019978.1|WP_015325772.1|5339_5597_+|DUF370-domain-containing-protein
MLHLGGGYTIPAKDVVMIADWESTTDSPETRYFLKVAEEEGFIIDYSDGEPSSFVITEEKIYYSMISSDTLQKRVNFIYNLGSNE
>NC_019978.1|WP_015325771.1|4435_5302_+|DUF721-domain-containing-protein
MAESIKKLLDDTLNKLGLSRRLKEEKVLNLWSQLIGDKIGAHTQAKYINCGVLFVTVDNSTWAHQLLFMKKNLIQKINQKMGQQIVKEIRFQVGKLNKEAVQDFSDSDPLEDIELTSNELNKLQEITNQVEDSEIRDKFFNLLINDQKRKKWQKINDWHPCPDCSVLISPEEDKCYICQTKEKRVNTKEVKELLVSSPWLSYQEIIDYFPQLSKDDFQLVKQEMIEELEVKIDNLTIQVLKSEINQQKLRVIFQKYVMLETGVTPDNLTDRLIKKIIGGNKMKIYRSL
>NC_019978.1|WP_015325770.1|3314_4433_+|DNA-replication/repair-protein-RecF
MKLSQLYLNKFRNYKQQHLEFNSHLNLFIGDNAQGKTNLLEAIYLLGTGSSHRTNVTSELANWEDKKFYAKGEVLTASQDYQLTVSLKGRQKEVKVNSNKLDRITDLIGYLNVVIFSPEDLKLIKGSPSLRRKFINLELAQVNSYYNHLLKDYRKVLKQRNNLLKEIRDNGAPAAMLEVWNQQLIDLGAKVIKRRLEALKKLIPLARLKQRKLTGGAETLELKYDTKLKIGHESSVDVIKKEFESYLIQQQQKEIARGVTTIGPHRDDISLIVNNIDIRKFGSQGQQRTTALALKLSELEFMKSETGEYPVLLLDDVFSELDNKRCAQLLNTVRDKIQTFITSTNQRELNSEKVGINDYNLYKINNGKAIEV
>NC_019978.1|WP_015325780.1|21432_22431_+|signal-peptide-peptidase-SppA
MKVDIKYLALFFLIVILLGGLFLGGIIYAIANNFRENELFKESIAVINISGPIAAGSSGGVLSDAQANSYRIMQYINQAKNNEMVKGILLRVNTPGGSSAASDAIYKELKKFKATGRPIVVSMGDIAASGGYYVSTAADQIYANGNTITGSIGVIMKFTNLKELYNKVGIKPVTFTSGPYKDIGSPSRELSKKERNIIQKMINDVYQRFVDVVVEGRNLSRDEVKDLADGRIYTGAQARRLGLVDKLGTYYDAINATARLANIEGQPNLIHYGQTSPLKRLIGSFQEVISYTLFKGMIKENINLEHDNFNFFYNYFLQQGSRDNFKRVQLNY
>NC_019978.1|WP_015325781.1|22801_23968_+|alanine--glyoxylate-aminotransferase-family-protein
MKEKRTLMLPGPTPIPEHARQAGAQKIIGHREKECEDLLREVTEGLKYVFQTENDVLALTCSGTGGLEASIANTLSKGDKVLVLCTGAFGERYATIAERYGIDVERMNFPWGEAVDVTRVEKRLEEDTTDEIKAILMTHNETSTGVINHPQPLGELAEQYNCLLLVDAVSSLGGIELKTDEWGVDVVVTSSQKALMTPPGLCLVSVSPKALKAGEDSDLPKFYWSFKRAKDRYDRDTQTPSTPALSTLYVLREVLAEIREEGLENVFRRHKVVAKAIRQAVQALGLDVLVKDEKIASKTVTAIKLPTEIEFTILRQRLKDEHNVYVTGSKGKLKGDYFRIGHLGNVSRTDVLATISALELVLQKEGLEVELGTGLQAAQKVFLEEERR
>NC_019978.1|WP_015325782.1|23967_25554_+|phosphoglycerate-dehydrogenase
MRILVSDPLSQAGMDLLEENGVDVTYNTELSYDQLLEEIGNYDGILLRSMTPLNEEVLSQADNLKVIARAGSGYDNIDLDAASKEGIVVLNTPGENTISAAEQTMALMLAISRNTVQANQALHKGVWDRNKYMGVEVNDKTLGIIGLGRVGGEVAKRAKAFNMEVIANDPYIPEERGEKLGVELVSKDELYQRSDYVTIHTPLTDETDHIFNKETFAKMKDGVRIINAARGGCIDRFDLYDAVESGKVAAAGLDVHEEEPPGKDYNLLELEDKVILAPHLGGTTVAAMDNVAIEAAKQALMVLNGEPPRTPLNIPRLQPEEMVKLKPYIDLADNLGQFYAGWNEERIEEIEMIYEGQIAEYDLTPVTKGVLQGLLNPILDEEVNSVNAEMVAEERGIKVSQTTSNTSDDYSSLITLKVKSESQKKELSGTIFHDTPRIVAINGYDVDIVPQGTMLVTDHQDQPGIVGQVGTILGENEVNIASMQVGRDNAGGKAIMILNIDQEIDAQLKEKLLNINGMLDISILTVAD
>NC_019978.1|WP_015325783.1|25574_26858_+|serine--tRNA-ligase
MLDLGFVRENIDLVKEVLDQRGTEAPINEFTEVDNKRRELIQEVEKLQQKRNKESTKIGQLKREGKDKEAEEIIQKMGQVADEIKELEGQVKEYNQRLDEIMLRVPNIPHESVPVGKDESDNVCNRKWGKPTEFDFEAQAHWDLGTALGILDFERGAKVSGARFTFLKGAAAKLERALISFMLDIHTQEHDYNEVFPPFMVHKDSMLGTGQLPKFKEDAFKVEGTDYYLIPTAEVPVTNMYRGQILNKEELPIYHVAHSACFRAEAGAHGRDTRGIIRQHQFNKVEMVKFVEPEDSYDELEKLVKNAETILQRLELPYRVMDMCTGDLGFTAAKKYDLEVWMPSYDTYREISSCSNFEDFQARRAGIKYRPKAGANTRYVHTLNGSGLAIGRTVAALMENYQNADGSITIPEALQPYMGGQKRINKE
>NC_019978.1|WP_015325784.1|26965_28390_+|6-phospho-beta-glucosidase
MNKADETFPKDFLWGGATAANQLEGAYLEDDKGLSTADVLPNGSLGEIDEDAGEECLYHEGIDFYHRYKEDIELFAEMGFDCLRVSIAWTRIFPKGNEESPNQAGLQFYDNLFDELLKYDIEPVVTLSHYEMPLHLVKEYGGWRNRKLVKFFERYAKVVFDRYKDKVKYWLTFNEINAIFHTPFNAGGLILEDGENKEEIKYQAAHHQFVASALAVKACHEIIPDAQIGSMSLAIPFYPYTCDPDDVLKAMKRERELFFFTDVQARGYYPSYMDRIWAEDDIDIEMKEEDEVILKEHTVDYVGFSYYMSCAVSTFPEDKEQVSGNIVGGVKNPYLETTDWSWQIDPKGLRYIANRLYDRYQKPLFIVENGLGAVDEIEEDGSINDDYRIDYLEAHIEQLGEAIADGVDLMGYTSWGPIDLVSASTGEMKKRYGFIYVDRDNSGEGTLERIKKKSFDWYKEVIASNGEKVIPKEK
>NC_019978.1|WP_015325785.1|29032_29278_+|NAD(P)H-dependent-oxidoreductase-subunit-E
MNEITVCVGSSCHLKGAPQIIKKLKKLVRRYDLETEVNLSASFCLGCCTEGVIVKFDEEIITNVSPDNIVDIFYSQLEGEI
>NC_019978.1|WP_015325786.1|29278_30967_+|4Fe-4S-binding-protein
MGIITLTESDCKDCHRCIRNCSLKAIGNKGGQSEVVEDKCIYCGECIEVCPQNAKEVSNQLTELKKILEGEELIASLAPSFVAAFDCQPNQLVAALKELGFSAVEETAKGAEVITKHYNQLLTKRNKPLISACCPAVVNLIERHYPELIPYLAPSISPMVAHGKMIKEKYTDAKVVFIGPCIAKLDEVSWDSSKEAIDLAITFDQLQELLIQSQIDYKNLEPVKRNNSISSWATAFPVEGGVLKSAELNTDFNSDILSVSGLDECINTFQDLLATEISPRFIEAMVCNGGCINGPGLSSELGVNARREKIVNYTQNIVKQKKNQHRLDSNLKRSYTNKKAEIDLPTENQIKLILSQIGKFSPEDELDCGGCGYNSCREKAIAVYQGLAENRMCIPYMKGKLESLADIIVETSPNAIIVVDKDMVIQKFNPQANKLFNRRDELAIGNKLHRYLDPQDFINVADSKKCISRKKVEYKQYDVIVEEAIFPLPEYDLIVGILTDVTEQEKHKEKVAKMKETTLEKANAVINKQMKVAQEIAGLLGESTSETKAILHEVRELMREER
>NC_019978.1|WP_015325787.1|30969_32118_+|SpoIIE-family-protein-phosphatase
MHVETSAAHVSKHGEELCGDNVQVVGNEDAKIIVLSDGLGSGVKANILSTLTTKIASGLLEKGIPIEEVVETITQTLPVCQERQLAYSTLSVLKVFNDGRCYLVEIDNPSSFLINKQGQITKLEMNERQVGDKEIKEAHFKLKEDEMIMLVSDGVVHAGIGGLLNFGLGWDGVAKHLEDYIKKYESSNKIAQKLVELCEAYYCMEPGDDTTAVVVKFRSQRKITLFTGPPKEKETDKEVVDKLVSSDSKKVICGGTTAQIVARELDRELEVELSYHDQEVPPISKMEGMDLVTEGLLTLSKCLERLKEADCQEDLPVKEDGATKLARLLLKSDQVKLLVGQAVNSAHQSLKLPQEMAIRKQIIEKLVKSLERQGKEIQINWF
>NC_019978.1|WP_015325788.1|32132_32357_+|NAD(P)H-dependent-oxidoreductase-subunit-E
MKLKVCIGTPCHLMGAQNLISAVKEFSHKKTIKLDIEAVNCLDNCKQAPAVELDGKVYAPSTPQELIELIENRL
>NC_019978.1|WP_015325789.1|32386_33898_+|4Fe-4S-dicluster-domain-containing-protein
MTNDVSGITKLRRKLFSKVAELALNNNLRAEVNNLAQTVIPEEGLGYRCCVHKERAIVKDRIKSALGLEPNGEVSDLSAAVDQALELDDLTGPTVNVLDIACDRCPLDKYRVSDACRNCVDHSCMNACPQDAIVTVQNRAYIDQEKCIECGLCKQSCPYNAILEMTRPCESACGVDAIEANNDRQANIDPKHCVSCGACIESCPFGAITYKSQILQVAKMLKKEKTIAVLAPSFVGQFGPQVTPNQIKQGLTKLGFDKVHEVALGADIVAIEETKELLAKVPKEQEFLTTSCCPSFFTLLKQEFPQLIEKSSSTVSPMVAIAKVLKKESSDAKIVFVGPCIAKKDEGLAYNEVDAVLTFEELGAMFVGAGINLVQLAGDNKFKEASDAGRTFGRAGGLVKAVTGSATELEPKIEFEAIQAEGLEECTKTLRLAQAGQYQNYFIEGMGCTGGCVGGPAALMNSKFTTKQVNDFGSKAQINEAIENKQAQEMIDKLGSEEFHRQK

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Crispr_ID: NC_019978_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019978_2

935878-938288

Unclear

Consensus_repeat	Method
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	PILER-CR
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CRISPRCasFinder
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CRT

32 spacers

cas4,cas2,cas1,WYL,cas3,cas8a4,cas7,cas5,cas6

The CRISPR arrays of NC_019978_2

>merge|NC_019978|2|935878-938288|PILER-CR,CRISPRCasFinder,CRT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGATGACGGGCCAACTGCTGAAGATGTAGTTGATGACTTCTGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGCACCTAATTCAACCGTCTTAACGTCGCTATTAGACGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGCTAGCTTGTAATTCTTCTTTGATTATTTGAGTTGTTCCGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGACTATATCACCTTCGTCTCCCGAAGTTTCAACAAGGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTTTAACTATATCAATCGGCTCTTCAAAAGGTGATAATGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTTATATTATTAATCCAATCTAATCTGCAATAATCAGTACGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGATGAACTGACCTATCCAACCTTGCTCGTTAATATATGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTTTATAAAACCACCACCATCATTGGCTTTTTTAAGAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTCAATAGTTAGATAATCTATTGCAGTAGTTACAATAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGACTCCATAACTATAACCAGATAAGTCGATATTAAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGCCAACTAGAACCAAAGCTATTGTTAATTACGTCAGTCGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGGTAAATATTAGGTCTGCATTATCTATATTATTAACTTGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGGATATTAGCAATCAATGGATTATAGATAAATCTTTAGGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGGTCTATAAAATTGAATATACTGATTTTAATACTAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGGCAGCTTGCAGCTCCAACCAATATCTGAGCATTGAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTTGTTGTTCCTGGAGATCATGATCATAGCTTATGATACGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGGATCCAGTTGAAGATGACCCTAGTGGACCAGTAGAAGAATAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGACGCCTGTCAAGGTGCTGAATGTTCGAGGTGGCAAGATGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGCTGACCTTAGCCCACATACATTACACCTCCTATAGAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTGTTCATTAACACAAGATACTATTGTAGACAATGGATAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGATATTCTACCATTAGTTGTATTGTCAACAGGGTCAGAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGACGCTTGAGACGTCGCCTAACTCTACCTCTGCATTAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGATCTACCGAGAAAAAGGACTCAGCAACGATAATTACTTGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGACTAACTTGTTGCCGATTGAAGGAGAGGCTAATACTGGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGGCAATGCAGGAGTTAATGAAGTCGCAGGAGTAGTTCAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGATTCAATCGCCTTACAACAAGCAGTAAGGGATTTAGATAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTATATTTCAGAATTGCATAATCGTACAGCAGAAGAAGGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGATTGCATTGAAAATATTCTCCCAAATGTAAGTTATAGGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGCAAAAATTGATAGTTTCAGCCTAATATGATATAATAAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGTTTAATATTAAAAACGGATATGCAATTCAAGTTTTAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGACTCACCACCTACCTTATCAGCTAGTTTTAGCAACAAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAGAGGAAAGTATGCAACTAGTTATAGAACCCCAGTAGATTAGTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAC

>NC_019978|2|2|935878-938288|PILER-CR
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATGACGGGCCAACTGCTGAAGATGTAGTTGATGACTTCT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CACCTAATTCAACCGTCTTAACGTCGCTATTAGAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CTAGCTTGTAATTCTTCTTTGATTATTTGAGTTGTTCC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTATATCACCTTCGTCTCCCGAAGTTTCAACAAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTAACTATATCAATCGGCTCTTCAAAAGGTGATAAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTATATTATTAATCCAATCTAATCTGCAATAATCAGTAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATGAACTGACCTATCCAACCTTGCTCGTTAATATAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTATAAAACCACCACCATCATTGGCTTTTTTAAGA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TCAATAGTTAGATAATCTATTGCAGTAGTTACAATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTCCATAACTATAACCAGATAAGTCGATATTAAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CCAACTAGAACCAAAGCTATTGTTAATTACGTCAGTC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GTAAATATTAGGTCTGCATTATCTATATTATTAACTT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GATATTAGCAATCAATGGATTATAGATAAATCTTTAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GTCTATAAAATTGAATATACTGATTTTAATACTAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GCAGCTTGCAGCTCCAACCAATATCTGAGCATTGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTGTTGTTCCTGGAGATCATGATCATAGCTTATGATAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GATCCAGTTGAAGATGACCCTAGTGGACCAGTAGAAGAATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACGCCTGTCAAGGTGCTGAATGTTCGAGGTGGCAAGAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CTGACCTTAGCCCACATACATTACACCTCCTATAGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TGTTCATTAACACAAGATACTATTGTAGACAATGGATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATATTCTACCATTAGTTGTATTGTCAACAGGGTCAGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACGCTTGAGACGTCGCCTAACTCTACCTCTGCATTAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATCTACCGAGAAAAAGGACTCAGCAACGATAATTACTT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTAACTTGTTGCCGATTGAAGGAGAGGCTAATACTG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GCAATGCAGGAGTTAATGAAGTCGCAGGAGTAGTTCA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATTCAATCGCCTTACAACAAGCAGTAAGGGATTTAGATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TATATTTCAGAATTGCATAATCGTACAGCAGAAGAAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATTGCATTGAAAATATTCTCCCAAATGTAAGTTATAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CAAAAATTGATAGTTTCAGCCTAATATGATATAATAAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTAATATTAAAAACGGATATGCAATTCAAGTTTTA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTCACCACCTACCTTATCAGCTAGTTTTAGCAACAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	AGGAAAGTATGCAACTAGTTATAGAACCCCAGTAGATTA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAC

>NC_019978|2|2|935878-938288|CRISPRCasFinder
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATGACGGGCCAACTGCTGAAGATGTAGTTGATGACTTCT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CACCTAATTCAACCGTCTTAACGTCGCTATTAGAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CTAGCTTGTAATTCTTCTTTGATTATTTGAGTTGTTCC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTATATCACCTTCGTCTCCCGAAGTTTCAACAAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTAACTATATCAATCGGCTCTTCAAAAGGTGATAAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTATATTATTAATCCAATCTAATCTGCAATAATCAGTAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATGAACTGACCTATCCAACCTTGCTCGTTAATATAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTATAAAACCACCACCATCATTGGCTTTTTTAAGA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TCAATAGTTAGATAATCTATTGCAGTAGTTACAATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTCCATAACTATAACCAGATAAGTCGATATTAAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CCAACTAGAACCAAAGCTATTGTTAATTACGTCAGTC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GTAAATATTAGGTCTGCATTATCTATATTATTAACTT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GATATTAGCAATCAATGGATTATAGATAAATCTTTAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GTCTATAAAATTGAATATACTGATTTTAATACTAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GCAGCTTGCAGCTCCAACCAATATCTGAGCATTGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTGTTGTTCCTGGAGATCATGATCATAGCTTATGATAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GATCCAGTTGAAGATGACCCTAGTGGACCAGTAGAAGAATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACGCCTGTCAAGGTGCTGAATGTTCGAGGTGGCAAGAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CTGACCTTAGCCCACATACATTACACCTCCTATAGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TGTTCATTAACACAAGATACTATTGTAGACAATGGATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATATTCTACCATTAGTTGTATTGTCAACAGGGTCAGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACGCTTGAGACGTCGCCTAACTCTACCTCTGCATTAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATCTACCGAGAAAAAGGACTCAGCAACGATAATTACTT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTAACTTGTTGCCGATTGAAGGAGAGGCTAATACTG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GCAATGCAGGAGTTAATGAAGTCGCAGGAGTAGTTCA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATTCAATCGCCTTACAACAAGCAGTAAGGGATTTAGATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TATATTTCAGAATTGCATAATCGTACAGCAGAAGAAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATTGCATTGAAAATATTCTCCCAAATGTAAGTTATAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CAAAAATTGATAGTTTCAGCCTAATATGATATAATAAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTAATATTAAAAACGGATATGCAATTCAAGTTTTA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTCACCACCTACCTTATCAGCTAGTTTTAGCAACAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	AGGAAAGTATGCAACTAGTTATAGAACCCCAGTAGATTA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAC

>NC_019978|2|1|935878-938288|CRT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATGACGGGCCAACTGCTGAAGATGTAGTTGATGACTTCT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CACCTAATTCAACCGTCTTAACGTCGCTATTAGAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CTAGCTTGTAATTCTTCTTTGATTATTTGAGTTGTTCC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTATATCACCTTCGTCTCCCGAAGTTTCAACAAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTAACTATATCAATCGGCTCTTCAAAAGGTGATAAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTATATTATTAATCCAATCTAATCTGCAATAATCAGTAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATGAACTGACCTATCCAACCTTGCTCGTTAATATAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTATAAAACCACCACCATCATTGGCTTTTTTAAGA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TCAATAGTTAGATAATCTATTGCAGTAGTTACAATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTCCATAACTATAACCAGATAAGTCGATATTAAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CCAACTAGAACCAAAGCTATTGTTAATTACGTCAGTC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GTAAATATTAGGTCTGCATTATCTATATTATTAACTT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GATATTAGCAATCAATGGATTATAGATAAATCTTTAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GTCTATAAAATTGAATATACTGATTTTAATACTAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GCAGCTTGCAGCTCCAACCAATATCTGAGCATTGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTGTTGTTCCTGGAGATCATGATCATAGCTTATGATAC
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GATCCAGTTGAAGATGACCCTAGTGGACCAGTAGAAGAATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACGCCTGTCAAGGTGCTGAATGTTCGAGGTGGCAAGAT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CTGACCTTAGCCCACATACATTACACCTCCTATAGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TGTTCATTAACACAAGATACTATTGTAGACAATGGATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATATTCTACCATTAGTTGTATTGTCAACAGGGTCAGAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACGCTTGAGACGTCGCCTAACTCTACCTCTGCATTAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATCTACCGAGAAAAAGGACTCAGCAACGATAATTACTT
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTAACTTGTTGCCGATTGAAGGAGAGGCTAATACTG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	GCAATGCAGGAGTTAATGAAGTCGCAGGAGTAGTTCA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATTCAATCGCCTTACAACAAGCAGTAAGGGATTTAGATA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TATATTTCAGAATTGCATAATCGTACAGCAGAAGAAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ATTGCATTGAAAATATTCTCCCAAATGTAAGTTATAG
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	CAAAAATTGATAGTTTCAGCCTAATATGATATAATAAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	TTTAATATTAAAAACGGATATGCAATTCAAGTTTTA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	ACTCACCACCTACCTTATCAGCTAGTTTTAGCAACAA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAG	AGGAAAGTATGCAACTAGTTATAGAACCCCAGTAGATTA
GTTACAAACCTTACTCCGTTAAGTAGGAGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_019978.1\|WP_015326652.1\|953214_955050_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_019978.1\|WP_015326648.1\|948587_949916_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237675
NC_019978.1\|WP_015326650.1\|950432_953069_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_019978.1\|WP_015326634.1\|930549_931755_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|237942
NC_019978.1\|WP_015326635.1\|931790_932192_+\|copper-chaperone-Copz-family-protein	unknown	unknown	gnl\|CDD\|375849
NC_019978.1\|WP_015326632.1\|929584_930124_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_041607665.1\|940075_942313_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_019978.1\|WP_015326631.1\|929279_929459_+\|small,-acid-soluble-spore-protein,-alpha/beta-type	unknown	unknown	gnl\|CDD\|365990
NC_019978.1\|WP_015326647.1\|945854_946811_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_019978.1\|WP_015326642.1\|938697_939693_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019978.1\|WP_015326644.1\|942327_944196_+\|hypothetical-protein	cas8a4	cls000706_cas8a4_CAS-I-A	unknown
NC_019978.1\|WP_015326645.1\|944188_945148_+\|DevR-family-CRISPR-associated-autoregulator	cas7	pfam01905_cas7_CAS-I	gnl\|CDD\|376656
NC_019978.1\|WP_015326641.1\|935436_935613_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_015326638.1\|933602_933848_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_019978.1\|WP_015326640.1\|934430_935348_+\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	cas4	pfam06023_cas4_CAS-I	gnl\|CDD\|283640
NC_019978.1\|WP_015326636.1\|932209_932413_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_015326639.1\|933861_934431_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019978.1\|WP_015326649.1\|949933_950302_+\|YlbF-family-regulator	unknown	unknown	gnl\|CDD\|377611
NC_019978.1\|WP_015326637.1\|932584_933601_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_019978.1\|WP_015326646.1\|945160_945841_+\|hypothetical-protein	cas5	cls000048_cas5_CAS-I-A	unknown

Protein	Function_ID	Function_description	E-value
NC_019978.1\|WP_015326652.1\|953214_955050_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_019978.1\|WP_015326648.1\|948587_949916_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237675	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_019978.1\|WP_015326634.1\|930549_931755_+\|glutaredoxin-3	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	3.21656e-103
NC_019978.1\|WP_015326635.1\|931790_932192_+\|copper-chaperone-Copz-family-protein	gnl\|CDD\|375849	pfam18423, zf_CopZ, Zinc binding domain. This is N-terminal domain containing a mononuclear metal center for zinc binding found in copper chaperone CopZ proteins.	1.62661e-12
NC_019978.1\|WP_041607665.1\|940075_942313_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.81219e-46
NC_019978.1\|WP_015326647.1\|945854_946811_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	9.84502e-10
NC_019978.1\|WP_015326645.1\|944188_945148_+\|DevR-family-CRISPR-associated-autoregulator	gnl\|CDD\|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	4.51575e-70
NC_019978.1\|WP_015326640.1\|934430_935348_+\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	gnl\|CDD\|283640	pfam06023, Csa1, CRISPR-associated exonuclease Csa1. CRISPR (clustered regularly interspaced short palindromic repeats) elements and cas (CRISPR-associated) genes are widespread in Bacteria and Archaea. The CRISPR/Cas system operates as a defense mechanism against mobile genetic elements (i.e., viruses or plasmids). Csa1 is part of the archaeal subtype I-A system. Cas1 has not yet been enzymatically characterized.	1.30579e-79
NC_019978.1\|WP_015326642.1\|938697_939693_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.30444e-57
NC_019978.1\|WP_015326638.1\|933602_933848_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.08297e-18
NC_019978.1\|WP_015326631.1\|929279_929459_+\|small,-acid-soluble-spore-protein,-alpha/beta-type	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	7.34722e-07
NC_019978.1\|WP_015326650.1\|950432_953069_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_019978.1\|WP_015326639.1\|933861_934431_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.60895e-38
NC_019978.1\|WP_015326649.1\|949933_950302_+\|YlbF-family-regulator	gnl\|CDD\|377611	pfam06133, Com_YlbF, Control of competence regulator ComK, YlbF/YmcA. YlbF Is a family of short Gram-positive and archaeal proteins that includes both YlbF and YmcA which may interact synergistically. The family is necessary for correct biofilm formation, as null mutants of ymcA and ylbF fail to form pellicles at air-liquid interfaces and grow on solid media as smooth, undifferentiated colonies. During development, YmcA, YlbF and YaaT, family PSPI, pfam04468, interact directly with one another forming a stable ternary complex, in vitro. All three proteins are required for competence, sporulation and the formation of biofilms. The YmcA-YlbF-YaaT complex affects the phosphotransfer between Spo0F and Spo0B, thus accelerating the production of Spo0A~P. The three processes of biofilm formation, mature spore formation and competence all require the active, phosphorylated form of Spo0A, as Spo0A-P.	1.15016e-20
NC_019978.1\|WP_015326637.1\|932584_933601_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	8.32902e-90

>NC_019978.1|WP_015326641.1|935436_935613_+|hypothetical-protein
MKEKYCAKCDVYYYTPEGEKEIADCPFCSLGGLKNDNLTVRDKMVEKNYKNFTDKKGI
>NC_019978.1|WP_015326640.1|934430_935348_+|type-I-A-CRISPR-associated-protein-Cas4/Csa1
MYFLTSEERQKLVRGLLPKARQMEISDELRGWNWNQPPLEAMYEEKLALYEIAGKYCPTGRDLYLRKVEGVKTEWNQAMIQGKVLHDTLAELLVKAKKLMYCHGIEGQKIIIEKLQEVSFVALEKWESKLDQEFYLELKEKIKLMWQFEYNQLVVRMQGLLAKQPYIGVDSLVNLTIPIVVEQKLDGSFLGLSSYLSADAFNYCEPMILDLKFGKPKDFHKLTITGYALVMESIYSYPVSVGCLVYPEFRGDRIVVKKEFEIIDDELRQWFIEERDEKMRMVCEEIDPEVAQNCYQTCPYYEQCY
>NC_019978.1|WP_015326639.1|933861_934431_+|CRISPR-associated-protein-Cas4
MLITVTDIKQYIYCQRIIYFTYCMPLQRKKTYKMKFGKEQHQRSEELEPRRTLQRYGLEEGEKKFGVDLVSQRLGLRGKMDLLVVDDDNYIPIELKYSTRKPGLHHKYQLAAYCLLTEDKYQTSIRKGVIHLIPKKETFEVEITANLRRKVKQVIKEIKELISLEQMPAPVKAKGKCRDCEYRNFCGDV
>NC_019978.1|WP_015326638.1|933602_933848_+|CRISPR-associated-endonuclease-Cas2
MHILLIYDISEDKIRNKVAEACKDFGLKRIQWSAFLGQLNHNRREELMMRISKLLGDNEGNIRLYPICSKDIKLVHEINRV
>NC_019978.1|WP_015326637.1|932584_933601_+|CRISPR-associated-endonuclease-Cas1
MGQRSLVVDDYGMFVGKKSERVVVKKKKEVIEEIPFFKLDEILIASSGVSFSSDLIQECAKAGIQIDFVSYRGDHLAKLSSAAMLGTIKTRREQLLAYEDQRGVNLAVSFAKGKIENQIVLLKYLAKYRKSKDKQLYNLIYDGIDKITEIKKELDEIEGEQIGQVREYILSSEGRAAKKYWKIIKEILPDELGFSGRTTQGAKDLVNSLLNYGYGVLYSRVSAAILRAGLDLYAGFLHADRPGKPSLTLDLIEEFRQTIVDKTVIGLLNQGMKFKIEEGRIAKKDRKKLANKILDRLKSKERYQGKKFRLEVILQRQARKVASYVKGKKKYTPFVSGW
>NC_019978.1|WP_015326636.1|932209_932413_+|hypothetical-protein
MKLTTQVIEFAKEQGADLVGIVDLEETTIQDLVDKVNQVDKDLNWIGDKMSKVGSPVDNSNTDKRRK
>NC_019978.1|WP_015326635.1|931790_932192_+|copper-chaperone-Copz-family-protein
MKNNLCPQCDNLGRDINYTTVDSLVEKEIEGKKYSVCLTENCEVVYFNNLAIYETTDLRVQVWFKEDSTEDSPICYCSKLTRKEIKQAVAKGYNTVEEIREYTTKKLTGHCLTENPLGECCHQALQEEIAKQQ
>NC_019978.1|WP_015326634.1|930549_931755_+|glutaredoxin-3
MSDNQPEIEIYTLTWCPYCRKAKSFFRSKDLAYTEYLIDEAEGKKEEMAKRSNGAKTVPQIFIDGQNIGGYDDLIELETTGKLNEMLGLEPVDLDQIWDLVIVGAGPAGLSAAIYGARKGLEVLVLSLSLGGQVIETDIIDNWIGSPEITGGDLMESFWQHTQKYDVQAKLGAEVTNIRTQDKLKVVETTQQEIETRSVIVATGTHNRSLGVPGEHELKGKGVHYCAICDGYLYAGDEVAVVGGGNSGLEAALDMAKLDSKVNLIEVGDQLAGDEVLQEKVQANDLIEIYTGHGVEEITGAKEVEEIVIRDTETGKYQTLSIKAVFVEIGLIPNSGFVDQLVATNQHNEIIVDQNNQTTVEGIWAAGDVTDIKDKQIIVAAAEGAKAALRVNEYLQLNPED
>NC_019978.1|WP_015326632.1|929584_930124_+|hypothetical-protein
MRLCDDCIQKVAGSLSNQAQQTLNQLSPLFEEEVSLTGQVFEQTTALNRNAIKEIIAELESNLLLDHSVQGRKKVFYLTESGARYLELQNNPKSKKEESTNETEELEIEEVVEKAEDDISEIEDELIEKEEKDKEQDLETEESEDLTEEKKIEGEDNLQTEEKDDKQQDSGAIVWDFDL
>NC_019978.1|WP_015326631.1|929279_929459_+|small,-acid-soluble-spore-protein,-alpha/beta-type
MGRIMSDKTKYELAEELGFDHKVKDGDWGNITTREAGSLVKRAIEKTEEAMAQQDQKKQ
>NC_019978.1|WP_015326642.1|938697_939693_+|WYL-domain-containing-protein
MSNNLKDDNLKKISKLIKFINLTETKYATYDREELMDILDISETTFYRYLKQLNNEVEVPIKYDRKTKGYKIRQDYYMKPPQLTLSETLALVVSSNSILNNSQLPYYEETNMAITKIIASLPDNMTDLLSGFEDKIDFSLNSLVDYGECRDIFNKLRDAIQNETNVWMQYYSYNKDKISERVVSPYILNFKKGFLYLIAYCHKRNDTRMFRLDRIKKMKVTKDKFKYPDDFSLKEYLGNAWGVMRSGDDVEVKIKFTGDIARWIKDNNYHPTQEVEELEGDSVLMSFVTCSLNEVKGWVMKYGANAEVLEPQSLRDEIKEDIERMNQVYNK
>NC_019978.1|WP_041607665.1|940075_942313_+|CRISPR-associated-helicase-Cas3'
MQAPTGAGKTLASTMPYIIANEEGMNFPKKLIYSTPRRTLVNSLYSDILDEIKKGDFTKEYDVTIQTGEKKEDRYFNGDIIFTTFDQSLSSALSMPISLSNRLGNINVGAFLSSYLIFDEFHLFDLSGSYTTTVLLLEKLKDKVPFCVMTATISEEKINALADKLDARVIRADSSEYLADIVTQQGKERRIFTKDNSLDAEEIVKLHNQIEGQSKKSIVMCNRVENAQQIYEDINKLVNKEDGIETLLIHSRFLDEDRKRKEKQIKKLFAKDNDDSNVILVSTQVIEVGIDITSDIMHTEISAIDSFLQRIGRCARYRNQTGKVYVYDVLNEGDNKYLPYDDEVTLKTFSALQEIDGEVLTSELSQQIIDRVYSEETDVDAVANEKVDCSSDEFIKESWKLPDKDRFNNLIRNVIACSIVISPWVYDNCSPYNYQSLSISPGTLRSKVAEIAKETDDWLVKKVIERDDDSDFKYTYGETTADEIYPNNLYILNPDYFGYNLETGLVFDGTGKKFDPLPISNQEPDYDNTYKEESYLQHIESMNKEVPELEREMSYAIELIKDEFDLSADDFRDIVEFTIWAHDLGKLQEEWQLAHKRDEYDFIAHAERKSKPPSHAAESFWIVLELLEDFIFDYLENEGKIVDIIGKAMISHHSLNLNRTDKYTISTTVKKHLLNINADFFTEKDLTQFINKRADRLLLSLSVGEDISDEIRVRSINQYLFYFVLVRILRLADQRATKKLNQDNI
>NC_019978.1|WP_015326644.1|942327_944196_+|hypothetical-protein
MEKFFIPKSEGDYSDILLCRGVAEIVKQVFKQNEIDDLDILIKDVGSFYVIEPEEELKEDYFSDLNFRTLYPLIFYDKMDQRPNYTEDIVDFTTDKEYKDWTAEERKSGLIRQTTGIPLSNKIMNDLHEIKEYFGEILFTILDFFSEVSSDYNQLAEDLDQLFTKIKINKFKQIVKSKLSTAEVLEIEEELDQLCAKFDNYHWSKRNKVKKLIKNKLDESETTLDITENIKEIYDQGKIDFTNSHNALSSLLPKRVKGLNIGDLSSDSSITPKNSSEDWFKLFLILIGFYKLFIFKRLQSGNRLYSVIIPNQVLLDDFDDLYYQVEPDYYPADTLEKQNILFLSDFVIKLLDKLEDFNTRRRRRRRTRLKNYILGLKNAYLVDMGQNHVIKNIYDLNVPNWIILDEEKDKTKFKEVFQEFIDLIKPIDDKNEDIKLFQELYNFLTTERVDYLLNYYYQHAILAMQRLGNDQGAKIYTKRGVKFIMSKLDNVTDKNYSSILENEGFKSFAKAIRNSTLVPIYHNDKKKIKFGLLQELRRAALNKDTLITKLSEFMADYNNENGLENFHNNNPMRSNLTTGDFEEIVSLIDKHDSKIIGNMLLAYGFGKDEKVKEVKEEADNNE
>NC_019978.1|WP_015326645.1|944188_945148_+|DevR-family-CRISPR-associated-autoregulator
MSKEVYSISINGKVGLNLHDLNNEKSEGNQLTTRNVTITDGAGKLATVNAVSGDMLKHIQSSHLYKTAKENEDLPLCQGCEKFDANRITIDDDFDEFTKDSDNTKTDIVDEMLSRCVLDDMEGILVTNNKKNVGRDSTVEFGWLVAIPEEFNSENLFHVKYSDLEKSEGSGKNEGQNIFYRPVNSGQYAVVNNLEISRIGYNDISKEYALDKEDIETRYKALLKSIMLTYYSPEGAMRNTQAPHMTSFEGVVSISYSSVPAPTVSALNPDYSQQIESITETLNGIGEKVELKEFESIAEFCNIIKELIDNTAPYGAKEE
>NC_019978.1|WP_015326646.1|945160_945841_+|hypothetical-protein
MWLEIEYSPTSLFSFKDINATNTAATSLLFPTPFGVKMAIISEAIQKYDLAKGEEVFKLIKDKKIRFNIPKEAVVNKTFGRITDLRNKVGRSKPAYREYVFFNGELKIAIDAEELSKEEINLLKRLFVRVNYFGKRASFMQFKSFNETKELGNGYLQLMGEEDVQLANKSIIQLTEDIPPEATFAEINIYNSEEKLKRKNNKRIFTVNLEETLSGEGYQYYKIANS
>NC_019978.1|WP_015326647.1|945854_946811_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MELEIMSLKFTLVAEDTIKLPQHPGSTFRGAFGHGLREIACNIEETKCKECDLKSSCAYSLLFNPFLVGKEKFRNSKRFKDKPRPFVFKPLTNRKEVFREGEQIEFKLNLFGYLDRFLPYIIKAWKYLENQGIGIGRGKFVLSEVWNLNQVAGKQERVYSKDFGFNQMTEAKITKEDVKQFQNIFTSNSICLKLVTPTLLKYKGEFVDKIEFHTLMRNLFRRLTSLSLFYGEEQLDIDFGSYLDQAEEIELVKDNTSWQSWERYSNRQNKRIKMKGLVGEVEYKGNLEKFLSYLILGQYVNVGKNTVFGLGNYKLIKN
>NC_019978.1|WP_015326648.1|948587_949916_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSTEGRYFIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEIKQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQSLVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKEIKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLPRIRFMTSHPRDFSDKLIEAVTNLENVCEHFHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPKAAISTDLIVGFPGETEEDFAETMELYKQVRFDRAFTFIYSKRTGTPAAKMEEQVPEEKKKERHQRLLDLQSKIGLEENKKLKGEIVEVLVDGPSKKDPNKLSGRTRTDKIVIIESDQDLTGEIINVKINKAQSWTLFGKIVN
>NC_019978.1|WP_015326649.1|949933_950302_+|YlbF-family-regulator
MAIMEKAQNLADAIVNSEEYSNLRDAEAEVSKDESAQQLLQQYQAEQRKLQMAQMNGQEVNEDMKNDLQALQAKMQENTKVKELMDAQQKFNKVMETVNKVISGALSPEEENDAEGCGGGCC
>NC_019978.1|WP_015326650.1|950432_953069_+|DNA-mismatch-repair-protein-MutS
MSDLTPLMQQYFSIKDNYQEEILFFRLGDFYEMFAKDAQIAARELELTLTARNKGSGEETPMAGVPCKSAESYIAQLIEMGYKVAICEQVEDPKATSGLVKREVVRVVTPGTVVNNDLLEDKDNNYLAAIIGNQDGFGFAVVDVSTGEFVTTQLDGPTQINKVIDELSRINPAEILLDNKVEETEEIIEFIDNQLNPILSKTKEGFTTKEAYRLLTDQFDVVNLEGFGCEELPLAIQAAGAILDFLVETQKRSLNHINQLATYSTTDYMVLDANTRRNLELTQTMRDKSKRGSLLWVLDQTVTAMGGRKLKKWVEQPLLELDRIEYRLDAVEEITKNIFAKEELKELLTEVYDIERLLGKIIYGSANARDLISLKSSLHILPEVKEVLDQFKTPKLKKLQDNLDKLEDVACLIENSIKEDPPTTLTEGSIIKKGYDNQLDELLEAMENGKQWIIDLQKQERERTGISSLKVGHNKVHGYYIEVTKANLDAVPEDYVRKQTLSNSERYITPELKDKESVILGAQENSKELEYKLFVEIRDKVAQETERIQKSATILAQLDALLSLAEVALNNDYTKPQLNTDDQIDIEAGRHPVVEEMMEEEVFVPNDTYLDQQSDRFGIITGPNMSGKSTYMRQVALIVLLAQIGSFVPADKAKLSIVDRIFTRVGASDDLTTGQSTFMVEMNEVANILNNATANSLIILDEVGRGTSTYDGLSIAWAVTEYISNPEKIGAKSLFATHYHELTELEERLPGVRNYNVAVKEEGDDVVFLHKIIPGEANQSYGIEVAKLAGVPSEVTNRSKEILDWLEEEEDKKVTEDTNQSQKKENQIKEEAGQLALFQGQTSEVVQKLSKLDIMSLTPLEAMNKLHQLQQKAQEEVN
>NC_019978.1|WP_015326652.1|953214_955050_+|DNA-mismatch-repair-endonuclease-MutL
MGQIQILSKEVANKIAAGEVVERPASVVKELVENSIDAGSSKIEVKVKNGGKDLIQIIDNGVGLAEDEVKLAFQRHATSKISRANDLFTLRTLGFRGEALPSIAAVSKVEMISKTEDSLSGTRLQIVGGEVKARESCGCRKGTNIIVRDLFFNTPVRYKYLKQTSTEIGHISDIINRLSLAYPKISFSLMHNDRQIVETTGNGNLLDVIFNIYGRDVAKEMIEVDYQDNYMQLTGYISKPTITRSSRRHQSYFVNDRFIKSGLMSKAVKEAYHTLLTIDRYPIVVLKLKLNPVHVDVNIHPTKLQAKFSRGNVVYELVKDGVSKAIKESDLVPKLKLEENDKQQKINQKKKVKKEEFKQDELNLKTSNTNNTKPNTGNVSSRDTKKERAEKIDKLFRVDQPQVENNNKKSKIKEEADNYNDKFNLVALGQIHQTYIVAQGQDGMYIIDQHAAHERIIYDQLLSKFKKQEIQIQELLVPLQLDLTYQEVQLLKERKERLEGLGFNLEEFGESSYLVRGVPIQLYNLDDKQLILDSIDNLLAQEVTENYQLVEGFITMMACKTAIKGGDKLSTTEMNHLLGQIKEYDVTNCPHGRPVMMHLGKKELEKKFKRR

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Crispr_ID: NC_019978_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019978_3

947122-948433

Unclear

Consensus_repeat	Method
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	PILER-CR
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CRISPRCasFinder
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CRT

17 spacers

cas6,cas5,cas7,cas8a4,cas3,WYL,cas4,cas2

The CRISPR arrays of NC_019978_3

>merge|NC_019978|3|947122-948433|PILER-CR,CRISPRCasFinder,CRT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCTAGATGAGCGGATGGGGAGTACAATCAGACATAAGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGTACGGCGATGATCAAAAGAATGGGTTAGATCAATTTCGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCCTGTTTCCTTGACTTGTAATGTTAGTTTTCTGCCGTCGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCCTACATAACATTATATATAAAATTACCGTTTTTTTAATGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGGTACAGGAGTGGCGATCAGAACAGACGAAAGCCTTAACGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCAATTCTCATTCCAAGCTTTGTAAGCCATAGCTGCTACGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGACGACAGGGGATGAGTGATAGAAATATTAGTATAGTTGGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGAATAAGTGATGAAATAAGTGTGACAGCTGGCAAGAGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGGGTTACTTAACATGGGAAGCTCAACTTAATGCTAACTGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCGGAATCAGAATAGCAGTTGGAACCAGTTTGACGTAGACGGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGGCCATTAGAAAGACAGGAAGTTATTCAGTAGACAATCAAGAGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGTCTTTTTATTCTCCAGCTCTAATTTTTGCTTTTCTTCTGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGATTTATTATTAGGATTTTTTCGTTCGATTAAGTAGCCGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGACTATTGCTTTAAGCTCCGGTTTGATTTTTTTAAACTTTGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCACATTAAGAGTCGTGCTCCATCATTAGTCAAAGCACCTTGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCTGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAGCTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCTGTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG

>NC_019978|3|3|947122-948433|PILER-CR
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAGATGAGCGGATGGGGAGTACAATCAGACATAA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	TACGGCGATGATCAAAAGAATGGGTTAGATCAATTTC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CCTGTTTCCTTGACTTGTAATGTTAGTTTTCTGCCGTC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CCTACATAACATTATATATAAAATTACCGTTTTTTTAAT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GTACAGGAGTGGCGATCAGAACAGACGAAAGCCTTAAC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CAATTCTCATTCCAAGCTTTGTAAGCCATAGCTGCTAC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ACGACAGGGGATGAGTGATAGAAATATTAGTATAGTTG
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	AATAAGTGATGAAATAAGTGTGACAGCTGGCAAGA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GGTTACTTAACATGGGAAGCTCAACTTAATGCTAACT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CGGAATCAGAATAGCAGTTGGAACCAGTTTGACGTAGACG
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GCCATTAGAAAGACAGGAAGTTATTCAGTAGACAATCAAGA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	TCTTTTTATTCTCCAGCTCTAATTTTTGCTTTTCTTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ATTTATTATTAGGATTTTTTCGTTCGATTAAGTAGCC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ACTATTGCTTTAAGCTCCGGTTTGATTTTTTTAAACTTT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CACATTAAGAGTCGTGCTCCATCATTAGTCAAAGCACCTT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG

>NC_019978|3|3|947122-948433|CRISPRCasFinder
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAGATGAGCGGATGGGGAGTACAATCAGACATAA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	TACGGCGATGATCAAAAGAATGGGTTAGATCAATTTC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CCTGTTTCCTTGACTTGTAATGTTAGTTTTCTGCCGTC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CCTACATAACATTATATATAAAATTACCGTTTTTTTAAT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GTACAGGAGTGGCGATCAGAACAGACGAAAGCCTTAAC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CAATTCTCATTCCAAGCTTTGTAAGCCATAGCTGCTAC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ACGACAGGGGATGAGTGATAGAAATATTAGTATAGTTG
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	AATAAGTGATGAAATAAGTGTGACAGCTGGCAAGA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GGTTACTTAACATGGGAAGCTCAACTTAATGCTAACT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CGGAATCAGAATAGCAGTTGGAACCAGTTTGACGTAGACG
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GCCATTAGAAAGACAGGAAGTTATTCAGTAGACAATCAAGA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	TCTTTTTATTCTCCAGCTCTAATTTTTGCTTTTCTTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ATTTATTATTAGGATTTTTTCGTTCGATTAAGTAGCC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ACTATTGCTTTAAGCTCCGGTTTGATTTTTTTAAACTTT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CACATTAAGAGTCGTGCTCCATCATTAGTCAAAGCACCTT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG

>NC_019978|3|2|947122-948433|CRT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAGATGAGCGGATGGGGAGTACAATCAGACATAA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	TACGGCGATGATCAAAAGAATGGGTTAGATCAATTTC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CCTGTTTCCTTGACTTGTAATGTTAGTTTTCTGCCGTC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CCTACATAACATTATATATAAAATTACCGTTTTTTTAAT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GTACAGGAGTGGCGATCAGAACAGACGAAAGCCTTAAC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CAATTCTCATTCCAAGCTTTGTAAGCCATAGCTGCTAC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ACGACAGGGGATGAGTGATAGAAATATTAGTATAGTTG
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	AATAAGTGATGAAATAAGTGTGACAGCTGGCAAGA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GGTTACTTAACATGGGAAGCTCAACTTAATGCTAACT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CGGAATCAGAATAGCAGTTGGAACCAGTTTGACGTAGACG
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	GCCATTAGAAAGACAGGAAGTTATTCAGTAGACAATCAAGA
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	TCTTTTTATTCTCCAGCTCTAATTTTTGCTTTTCTTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ATTTATTATTAGGATTTTTTCGTTCGATTAAGTAGCC
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	ACTATTGCTTTAAGCTCCGGTTTGATTTTTTTAAACTTT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CACATTAAGAGTCGTGCTCCATCATTAGTCAAAGCACCTT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG	CTAATTCTTCCTTAGCAAACTTCTGTAGGTCTAACTCT
GTTACAAACCTTGCTCCGTTAAGTAGGAGACTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_019978.1\|WP_015326648.1\|948587_949916_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237675
NC_019978.1\|WP_015326639.1\|933861_934431_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_019978.1\|WP_015326658.1\|958614_958818_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_015326654.1\|956024_956351_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_041607665.1\|940075_942313_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_019978.1\|WP_015326653.1\|955072_955996_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_019978.1\|WP_015326647.1\|945854_946811_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_019978.1\|WP_015326645.1\|944188_945148_+\|DevR-family-CRISPR-associated-autoregulator	cas7	pfam01905_cas7_CAS-I	gnl\|CDD\|376656
NC_019978.1\|WP_015326644.1\|942327_944196_+\|hypothetical-protein	cas8a4	cls000706_cas8a4_CAS-I-A	unknown
NC_019978.1\|WP_015326642.1\|938697_939693_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_019978.1\|WP_015326641.1\|935436_935613_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_015326638.1\|933602_933848_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_019978.1\|WP_015326655.1\|956444_957419_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|163057
NC_019978.1\|WP_015326640.1\|934430_935348_+\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	cas4	pfam06023_cas4_CAS-I	gnl\|CDD\|283640
NC_019978.1\|WP_015326652.1\|953214_955050_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_019978.1\|WP_015326646.1\|945160_945841_+\|hypothetical-protein	cas5	cls000048_cas5_CAS-I-A	unknown
NC_019978.1\|WP_015326656.1\|957444_958044_+\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|366860
NC_019978.1\|WP_015326649.1\|949933_950302_+\|YlbF-family-regulator	unknown	unknown	gnl\|CDD\|377611
NC_019978.1\|WP_156801210.1\|958111_958603_+\|hypothetical-protein	unknown	unknown	unknown
NC_019978.1\|WP_015326650.1\|950432_953069_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444

Protein	Function_ID	Function_description	E-value
NC_019978.1\|WP_015326650.1\|950432_953069_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_019978.1\|WP_015326639.1\|933861_934431_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.60895e-38
NC_019978.1\|WP_041607665.1\|940075_942313_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.81219e-46
NC_019978.1\|WP_015326653.1\|955072_955996_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	5.07889e-161
NC_019978.1\|WP_015326647.1\|945854_946811_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	9.84502e-10
NC_019978.1\|WP_015326648.1\|948587_949916_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237675	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_019978.1\|WP_015326645.1\|944188_945148_+\|DevR-family-CRISPR-associated-autoregulator	gnl\|CDD\|376656	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2. This group of families is one of several protein families that are always found associated with prokaryotic CRISPRs, themselves a family of clustered regularly interspaced short palindromic repeats, DNA repeats found in nearly half of all bacterial and archaeal genomes. These DNA repeat regions have a remarkably regular structure: unique sequences of constant size, called spacers, sit between each pair of repeats. It has been shown that the CRISPRs are virus-derived sequences acquired by the host to enable them to resist viral infection. The Cas proteins from the host use the CRISPRs to mediate an antiviral response. After transcription of the CRISPR, a complex of Cas proteins termed Cascade cleaves a CRISPR RNA precursor in each repeat and retains the cleavage products containing the virus-derived sequence. Assisted by the helicase Cas3, these mature CRISPR RNAs then serve as small guide RNAs that enable Cascade to interfere with virus proliferation. Cas5 contains an endonuclease motif, whose inactivation leads to loss of resistance, even in the presence of phage-derived spacers. This family used to be known as DUF73. DevR appears to be negative auto-regulator within the system.	4.51575e-70
NC_019978.1\|WP_015326638.1\|933602_933848_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.08297e-18
NC_019978.1\|WP_015326655.1\|956444_957419_+\|AAA-family-ATPase	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	1.24877e-135
NC_019978.1\|WP_015326652.1\|953214_955050_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_019978.1\|WP_015326640.1\|934430_935348_+\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	gnl\|CDD\|283640	pfam06023, Csa1, CRISPR-associated exonuclease Csa1. CRISPR (clustered regularly interspaced short palindromic repeats) elements and cas (CRISPR-associated) genes are widespread in Bacteria and Archaea. The CRISPR/Cas system operates as a defense mechanism against mobile genetic elements (i.e., viruses or plasmids). Csa1 is part of the archaeal subtype I-A system. Cas1 has not yet been enzymatically characterized.	1.30579e-79
NC_019978.1\|WP_015326642.1\|938697_939693_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.30444e-57
NC_019978.1\|WP_015326649.1\|949933_950302_+\|YlbF-family-regulator	gnl\|CDD\|377611	pfam06133, Com_YlbF, Control of competence regulator ComK, YlbF/YmcA. YlbF Is a family of short Gram-positive and archaeal proteins that includes both YlbF and YmcA which may interact synergistically. The family is necessary for correct biofilm formation, as null mutants of ymcA and ylbF fail to form pellicles at air-liquid interfaces and grow on solid media as smooth, undifferentiated colonies. During development, YmcA, YlbF and YaaT, family PSPI, pfam04468, interact directly with one another forming a stable ternary complex, in vitro. All three proteins are required for competence, sporulation and the formation of biofilms. The YmcA-YlbF-YaaT complex affects the phosphotransfer between Spo0F and Spo0B, thus accelerating the production of Spo0A~P. The three processes of biofilm formation, mature spore formation and competence all require the active, phosphorylated form of Spo0A, as Spo0A-P.	1.15016e-20
NC_019978.1\|WP_015326656.1\|957444_958044_+\|50S-ribosome-binding-GTPase	gnl\|CDD\|366860	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.	9.31782e-10

>NC_019978.1|WP_015326647.1|945854_946811_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MELEIMSLKFTLVAEDTIKLPQHPGSTFRGAFGHGLREIACNIEETKCKECDLKSSCAYSLLFNPFLVGKEKFRNSKRFKDKPRPFVFKPLTNRKEVFREGEQIEFKLNLFGYLDRFLPYIIKAWKYLENQGIGIGRGKFVLSEVWNLNQVAGKQERVYSKDFGFNQMTEAKITKEDVKQFQNIFTSNSICLKLVTPTLLKYKGEFVDKIEFHTLMRNLFRRLTSLSLFYGEEQLDIDFGSYLDQAEEIELVKDNTSWQSWERYSNRQNKRIKMKGLVGEVEYKGNLEKFLSYLILGQYVNVGKNTVFGLGNYKLIKN
>NC_019978.1|WP_015326646.1|945160_945841_+|hypothetical-protein
MWLEIEYSPTSLFSFKDINATNTAATSLLFPTPFGVKMAIISEAIQKYDLAKGEEVFKLIKDKKIRFNIPKEAVVNKTFGRITDLRNKVGRSKPAYREYVFFNGELKIAIDAEELSKEEINLLKRLFVRVNYFGKRASFMQFKSFNETKELGNGYLQLMGEEDVQLANKSIIQLTEDIPPEATFAEINIYNSEEKLKRKNNKRIFTVNLEETLSGEGYQYYKIANS
>NC_019978.1|WP_015326645.1|944188_945148_+|DevR-family-CRISPR-associated-autoregulator
MSKEVYSISINGKVGLNLHDLNNEKSEGNQLTTRNVTITDGAGKLATVNAVSGDMLKHIQSSHLYKTAKENEDLPLCQGCEKFDANRITIDDDFDEFTKDSDNTKTDIVDEMLSRCVLDDMEGILVTNNKKNVGRDSTVEFGWLVAIPEEFNSENLFHVKYSDLEKSEGSGKNEGQNIFYRPVNSGQYAVVNNLEISRIGYNDISKEYALDKEDIETRYKALLKSIMLTYYSPEGAMRNTQAPHMTSFEGVVSISYSSVPAPTVSALNPDYSQQIESITETLNGIGEKVELKEFESIAEFCNIIKELIDNTAPYGAKEE
>NC_019978.1|WP_015326644.1|942327_944196_+|hypothetical-protein
MEKFFIPKSEGDYSDILLCRGVAEIVKQVFKQNEIDDLDILIKDVGSFYVIEPEEELKEDYFSDLNFRTLYPLIFYDKMDQRPNYTEDIVDFTTDKEYKDWTAEERKSGLIRQTTGIPLSNKIMNDLHEIKEYFGEILFTILDFFSEVSSDYNQLAEDLDQLFTKIKINKFKQIVKSKLSTAEVLEIEEELDQLCAKFDNYHWSKRNKVKKLIKNKLDESETTLDITENIKEIYDQGKIDFTNSHNALSSLLPKRVKGLNIGDLSSDSSITPKNSSEDWFKLFLILIGFYKLFIFKRLQSGNRLYSVIIPNQVLLDDFDDLYYQVEPDYYPADTLEKQNILFLSDFVIKLLDKLEDFNTRRRRRRRTRLKNYILGLKNAYLVDMGQNHVIKNIYDLNVPNWIILDEEKDKTKFKEVFQEFIDLIKPIDDKNEDIKLFQELYNFLTTERVDYLLNYYYQHAILAMQRLGNDQGAKIYTKRGVKFIMSKLDNVTDKNYSSILENEGFKSFAKAIRNSTLVPIYHNDKKKIKFGLLQELRRAALNKDTLITKLSEFMADYNNENGLENFHNNNPMRSNLTTGDFEEIVSLIDKHDSKIIGNMLLAYGFGKDEKVKEVKEEADNNE
>NC_019978.1|WP_041607665.1|940075_942313_+|CRISPR-associated-helicase-Cas3'
MQAPTGAGKTLASTMPYIIANEEGMNFPKKLIYSTPRRTLVNSLYSDILDEIKKGDFTKEYDVTIQTGEKKEDRYFNGDIIFTTFDQSLSSALSMPISLSNRLGNINVGAFLSSYLIFDEFHLFDLSGSYTTTVLLLEKLKDKVPFCVMTATISEEKINALADKLDARVIRADSSEYLADIVTQQGKERRIFTKDNSLDAEEIVKLHNQIEGQSKKSIVMCNRVENAQQIYEDINKLVNKEDGIETLLIHSRFLDEDRKRKEKQIKKLFAKDNDDSNVILVSTQVIEVGIDITSDIMHTEISAIDSFLQRIGRCARYRNQTGKVYVYDVLNEGDNKYLPYDDEVTLKTFSALQEIDGEVLTSELSQQIIDRVYSEETDVDAVANEKVDCSSDEFIKESWKLPDKDRFNNLIRNVIACSIVISPWVYDNCSPYNYQSLSISPGTLRSKVAEIAKETDDWLVKKVIERDDDSDFKYTYGETTADEIYPNNLYILNPDYFGYNLETGLVFDGTGKKFDPLPISNQEPDYDNTYKEESYLQHIESMNKEVPELEREMSYAIELIKDEFDLSADDFRDIVEFTIWAHDLGKLQEEWQLAHKRDEYDFIAHAERKSKPPSHAAESFWIVLELLEDFIFDYLENEGKIVDIIGKAMISHHSLNLNRTDKYTISTTVKKHLLNINADFFTEKDLTQFINKRADRLLLSLSVGEDISDEIRVRSINQYLFYFVLVRILRLADQRATKKLNQDNI
>NC_019978.1|WP_015326642.1|938697_939693_+|WYL-domain-containing-protein
MSNNLKDDNLKKISKLIKFINLTETKYATYDREELMDILDISETTFYRYLKQLNNEVEVPIKYDRKTKGYKIRQDYYMKPPQLTLSETLALVVSSNSILNNSQLPYYEETNMAITKIIASLPDNMTDLLSGFEDKIDFSLNSLVDYGECRDIFNKLRDAIQNETNVWMQYYSYNKDKISERVVSPYILNFKKGFLYLIAYCHKRNDTRMFRLDRIKKMKVTKDKFKYPDDFSLKEYLGNAWGVMRSGDDVEVKIKFTGDIARWIKDNNYHPTQEVEELEGDSVLMSFVTCSLNEVKGWVMKYGANAEVLEPQSLRDEIKEDIERMNQVYNK
>NC_019978.1|WP_015326641.1|935436_935613_+|hypothetical-protein
MKEKYCAKCDVYYYTPEGEKEIADCPFCSLGGLKNDNLTVRDKMVEKNYKNFTDKKGI
>NC_019978.1|WP_015326640.1|934430_935348_+|type-I-A-CRISPR-associated-protein-Cas4/Csa1
MYFLTSEERQKLVRGLLPKARQMEISDELRGWNWNQPPLEAMYEEKLALYEIAGKYCPTGRDLYLRKVEGVKTEWNQAMIQGKVLHDTLAELLVKAKKLMYCHGIEGQKIIIEKLQEVSFVALEKWESKLDQEFYLELKEKIKLMWQFEYNQLVVRMQGLLAKQPYIGVDSLVNLTIPIVVEQKLDGSFLGLSSYLSADAFNYCEPMILDLKFGKPKDFHKLTITGYALVMESIYSYPVSVGCLVYPEFRGDRIVVKKEFEIIDDELRQWFIEERDEKMRMVCEEIDPEVAQNCYQTCPYYEQCY
>NC_019978.1|WP_015326639.1|933861_934431_+|CRISPR-associated-protein-Cas4
MLITVTDIKQYIYCQRIIYFTYCMPLQRKKTYKMKFGKEQHQRSEELEPRRTLQRYGLEEGEKKFGVDLVSQRLGLRGKMDLLVVDDDNYIPIELKYSTRKPGLHHKYQLAAYCLLTEDKYQTSIRKGVIHLIPKKETFEVEITANLRRKVKQVIKEIKELISLEQMPAPVKAKGKCRDCEYRNFCGDV
>NC_019978.1|WP_015326638.1|933602_933848_+|CRISPR-associated-endonuclease-Cas2
MHILLIYDISEDKIRNKVAEACKDFGLKRIQWSAFLGQLNHNRREELMMRISKLLGDNEGNIRLYPICSKDIKLVHEINRV
>NC_019978.1|WP_015326648.1|948587_949916_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSTEGRYFIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEIKQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQSLVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKEIKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLPRIRFMTSHPRDFSDKLIEAVTNLENVCEHFHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPKAAISTDLIVGFPGETEEDFAETMELYKQVRFDRAFTFIYSKRTGTPAAKMEEQVPEEKKKERHQRLLDLQSKIGLEENKKLKGEIVEVLVDGPSKKDPNKLSGRTRTDKIVIIESDQDLTGEIINVKINKAQSWTLFGKIVN
>NC_019978.1|WP_015326649.1|949933_950302_+|YlbF-family-regulator
MAIMEKAQNLADAIVNSEEYSNLRDAEAEVSKDESAQQLLQQYQAEQRKLQMAQMNGQEVNEDMKNDLQALQAKMQENTKVKELMDAQQKFNKVMETVNKVISGALSPEEENDAEGCGGGCC
>NC_019978.1|WP_015326650.1|950432_953069_+|DNA-mismatch-repair-protein-MutS
MSDLTPLMQQYFSIKDNYQEEILFFRLGDFYEMFAKDAQIAARELELTLTARNKGSGEETPMAGVPCKSAESYIAQLIEMGYKVAICEQVEDPKATSGLVKREVVRVVTPGTVVNNDLLEDKDNNYLAAIIGNQDGFGFAVVDVSTGEFVTTQLDGPTQINKVIDELSRINPAEILLDNKVEETEEIIEFIDNQLNPILSKTKEGFTTKEAYRLLTDQFDVVNLEGFGCEELPLAIQAAGAILDFLVETQKRSLNHINQLATYSTTDYMVLDANTRRNLELTQTMRDKSKRGSLLWVLDQTVTAMGGRKLKKWVEQPLLELDRIEYRLDAVEEITKNIFAKEELKELLTEVYDIERLLGKIIYGSANARDLISLKSSLHILPEVKEVLDQFKTPKLKKLQDNLDKLEDVACLIENSIKEDPPTTLTEGSIIKKGYDNQLDELLEAMENGKQWIIDLQKQERERTGISSLKVGHNKVHGYYIEVTKANLDAVPEDYVRKQTLSNSERYITPELKDKESVILGAQENSKELEYKLFVEIRDKVAQETERIQKSATILAQLDALLSLAEVALNNDYTKPQLNTDDQIDIEAGRHPVVEEMMEEEVFVPNDTYLDQQSDRFGIITGPNMSGKSTYMRQVALIVLLAQIGSFVPADKAKLSIVDRIFTRVGASDDLTTGQSTFMVEMNEVANILNNATANSLIILDEVGRGTSTYDGLSIAWAVTEYISNPEKIGAKSLFATHYHELTELEERLPGVRNYNVAVKEEGDDVVFLHKIIPGEANQSYGIEVAKLAGVPSEVTNRSKEILDWLEEEEDKKVTEDTNQSQKKENQIKEEAGQLALFQGQTSEVVQKLSKLDIMSLTPLEAMNKLHQLQQKAQEEVN
>NC_019978.1|WP_015326652.1|953214_955050_+|DNA-mismatch-repair-endonuclease-MutL
MGQIQILSKEVANKIAAGEVVERPASVVKELVENSIDAGSSKIEVKVKNGGKDLIQIIDNGVGLAEDEVKLAFQRHATSKISRANDLFTLRTLGFRGEALPSIAAVSKVEMISKTEDSLSGTRLQIVGGEVKARESCGCRKGTNIIVRDLFFNTPVRYKYLKQTSTEIGHISDIINRLSLAYPKISFSLMHNDRQIVETTGNGNLLDVIFNIYGRDVAKEMIEVDYQDNYMQLTGYISKPTITRSSRRHQSYFVNDRFIKSGLMSKAVKEAYHTLLTIDRYPIVVLKLKLNPVHVDVNIHPTKLQAKFSRGNVVYELVKDGVSKAIKESDLVPKLKLEENDKQQKINQKKKVKKEEFKQDELNLKTSNTNNTKPNTGNVSSRDTKKERAEKIDKLFRVDQPQVENNNKKSKIKEEADNYNDKFNLVALGQIHQTYIVAQGQDGMYIIDQHAAHERIIYDQLLSKFKKQEIQIQELLVPLQLDLTYQEVQLLKERKERLEGLGFNLEEFGESSYLVRGVPIQLYNLDDKQLILDSIDNLLAQEVTENYQLVEGFITMMACKTAIKGGDKLSTTEMNHLLGQIKEYDVTNCPHGRPVMMHLGKKELEKKFKRR
>NC_019978.1|WP_015326653.1|955072_955996_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MRESIVAIVGPTAVGKTKLSLTLAQDLDGEIVSADSMQIYKKMDIGTAKASPQEQKLVPHHMLDIVDPAQEFSVADFQERVDQLIPQISQRDKLPILVGGTGLYVKALIQGFLFPEMEKDWELRNRLEAEAKEKGTQFVHDKLKEIDPTLADKLHPNDIRRVIRGIEVYQQTGKTITHFKEEAKKRPPRYQAVKIGLKRDREKLYERINKRVDLMIEEGLVKEVRELYNQGYSRDLTSMQGLGYKELIGYFEDEYDLEEAVRLIKRNTRHFAKRQLTWFKRDDSIHWFDVGDYSFKELVTEVKQLIN
>NC_019978.1|WP_015326654.1|956024_956351_+|hypothetical-protein
MKYSKEVGKLVSKLNGTSDLDLLAEKEKVTPQEVSCQACSCQAREHDSYTYCPIIEGYLCRICCSYELCNDYQLVNKILKDDIFTSDQEVRLLCNKCENTKGNIEYSL
>NC_019978.1|WP_015326655.1|956444_957419_+|AAA-family-ATPase
MPLNNTNSSRKEVLRLFEAGQISISKVFKSIKEEEVEQIGAQEGVSSQQDRIKEVIDELNKLVGLDNIKELVKELKAFVKIQQVRKQRGLKSDPLVLHMIFKGNPGTGKTTVARIFGKLFKELGVLETGELQEVERADLVGEYIGHTAKKTREVIDKALGGILFIDEAYSLARGGKKDFGKETIDTLVKEMEDNKDNLIIILAGYPQEMDHFLSTNPGLKSRFPIQIEFEDYTLDQLVEIASLMLKNREYELTSQAETKFYSLLAKIRQEKGTDSGNARTVRNIIERLLRKQATRLADLKSIKKEELITITKADLHQLTIDEIY
>NC_019978.1|WP_015326656.1|957444_958044_+|50S-ribosome-binding-GTPase
MTSAILIGQPNVGKTSFLINFAQYLGVGELKLLVKRPAGFTATETYKLDTASQYLTSFNSHTTKELQSIKLKLPVGKQDKVMHLVDTCGLVSGIHSKQETRQAMSQTLQQIFNSQIVLHMIDLSKLDLEEGLEKIDQELYNFLNLKTGYSILANKVDLDTQGQSLKLLHDLVDENIVFPISALYQQGFVEVKSFLLKNI
>NC_019978.1|WP_156801210.1|958111_958603_+|hypothetical-protein
MDDYLDQEIDRLNNRSTLALKLQRGVLPYTLLLFSFAVVINSKVPISLFWASYIIGMGFSGDPLPSGMRGYQESVFMAGLGFWIFGIKDFLFSLTIILFIQLVDDYIDYHVERYVNQSNFVNYLDKVGTFLLAMLCFGIAVAINWQLAIIIIIVTPVVSFFLG
>NC_019978.1|WP_015326658.1|958614_958818_+|hypothetical-protein
MNFLFILSILVSLIFGYFLGRFLGYKRGFKEGFFAAPLIYRQQSLQQGNCLLCNNKMDNFSLKEEKS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

685429 : 692168

Indivirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015326408.1\|685429_686269_+	deoxyribonuclease IV	A0A1V0SCI4	Indivirus	7.9e-25	30.8
WP_156801255.1\|686397_687297_+	cell wall hydrolase	U5PWL4	Bacillus_phage	2.1e-23	35.9
WP_015326410.1\|687414_688344_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2FM09	Brevibacillus_phage	2.6e-16	40.5
WP_015326411.1\|688392_689076_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.2e-24	37.7
WP_015326412.1\|689293_690064_+	polysaccharide deacetylase family protein	A0A1V0SLN0	Klosneuvirus	1.2e-11	25.9
WP_015326413.1\|690073_690811_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_015326414.1\|690819_691674_+	VanW family protein	NA	NA	NA	NA
WP_015326415.1\|691733_692168_+	dUTP diphosphatase	A0A2L1IVN2	Streptomyces_phage	9.4e-30	47.6

DBSCAN-SWA_2

1114105 : 1122845

Leptospira_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015326790.1\|1114105_1115041_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	S5VY82	Leptospira_phage	9.5e-27	34.3
WP_083882274.1\|1115385_1116327_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	8.6e-20	32.8
WP_015326792.1\|1116347_1116845_+	hypothetical protein	NA	NA	NA	NA
WP_083882240.1\|1116844_1117141_+	SWF/SNF helicase family protein	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	4.2e-13	39.2
WP_015326793.1\|1117268_1119806_+	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	7.9e-44	25.7
WP_015326794.1\|1119821_1121582_+	DNA helicase RecQ	A0A167RIL2	Powai_lake_megavirus	1.6e-75	37.1
WP_015326795.1\|1121588_1121996_+	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_015326797.1\|1122521_1122845_+	rhodanese-like domain-containing protein	A9YWD4	Ostreococcus_tauri_virus	1.7e-07	35.5

DBSCAN-SWA_3

1929477 : 2033320

111

Bacillus_phage(16.67%)

bacteriocin,transposase,tRNA,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015327532.1\|1929477_1929813_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_015327533.1\|1930009_1930276_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_015327534.1\|1930326_1931334_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_015327535.1\|1931537_1931858_+	alpha/beta-type small acid-soluble spore protein	NA	NA	NA	NA
WP_015327536.1\|1931898_1932219_+	alpha/beta-type small acid-soluble spore protein	NA	NA	NA	NA
WP_015327537.1\|1932296_1933001_+	LysM peptidoglycan-binding domain-containing protein	U5Q0C0	Bacillus_phage	3.0e-41	44.0
WP_015327538.1\|1933024_1935235_-	DNA internalization-related competence protein ComEC/Rec2	Q0H255	Geobacillus_phage	9.7e-38	32.3
WP_015327539.1\|1935338_1935926_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_015327540.1\|1936051_1938529_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.3e-213	49.1
WP_015327541.1\|1938639_1938996_-	ribosome silencing factor	NA	NA	NA	NA
WP_015327542.1\|1939059_1940220_-	LCP family protein	NA	NA	NA	NA
WP_015327543.1\|1940235_1940793_-	HD domain-containing protein	NA	NA	NA	NA
WP_015327544.1\|1940796_1941408_-	nicotinate-nucleotide adenylyltransferase	G3MA22	Bacillus_virus	5.8e-17	29.5
WP_015327545.1\|1941535_1942063_+	hypothetical protein	NA	NA	NA	NA
WP_015327546.1\|1942052_1942724_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_015327547.1\|1942725_1944201_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_041608209.1\|1944325_1945201_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_015327549.1\|1945187_1946078_-	PHP domain-containing protein	NA	NA	NA	NA
WP_015327550.1\|1946224_1947286_+	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_015327551.1\|1947332_1949234_-	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_015327552.1\|1949375_1949918_+	hypothetical protein	NA	NA	NA	NA
WP_015327553.1\|1949983_1951432_-	TolC family protein	NA	NA	NA	NA
WP_015327554.1\|1951409_1952483_-	TolC family protein	NA	NA	NA	NA
WP_015327555.1\|1952499_1953654_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_015327556.1\|1953650_1955873_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	1.4e-57	31.6
WP_015327559.1\|1957144_1957777_-	hypothetical protein	NA	NA	NA	NA
WP_015327560.1\|1957904_1958138_-	hypothetical protein	NA	NA	NA	NA
WP_015327561.1\|1958187_1958397_-	hypothetical protein	NA	NA	NA	NA
WP_083882255.1\|1958694_1958835_-	hypothetical protein	NA	NA	NA	NA
WP_156801231.1\|1959729_1960985_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_052326472.1\|1961038_1961596_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_052326473.1\|1961534_1961972_-	DUF4372 domain-containing protein	NA	NA	NA	NA
WP_015327564.1\|1962274_1962844_-	hypothetical protein	NA	NA	NA	NA
WP_015327565.1\|1962915_1963089_-	hypothetical protein	NA	NA	NA	NA
WP_015327566.1\|1963112_1963328_-	hypothetical protein	NA	NA	NA	NA
WP_083882256.1\|1963782_1963944_-	hypothetical protein	NA	NA	NA	NA
WP_015327567.1\|1964526_1964718_-	hypothetical protein	NA	NA	NA	NA
WP_015327568.1\|1964750_1964945_-	hypothetical protein	NA	NA	NA	NA
WP_169314486.1\|1965129_1965777_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015327570.1\|1966037_1966619_-	hypothetical protein	NA	NA	NA	NA
WP_015327571.1\|1966734_1966908_-	hypothetical protein	NA	NA	NA	NA
WP_015327572.1\|1966949_1967165_-	hypothetical protein	NA	NA	NA	NA
WP_015327573.1\|1967316_1968057_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_015327574.1\|1968720_1969098_-	hypothetical protein	NA	NA	NA	NA
WP_015327575.1\|1969161_1969413_-\|bacteriocin	bacteriocin class II with double-glycine leader peptide	NA	NA	NA	NA
WP_156801232.1\|1969639_1970035_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_015327576.1\|1971084_1971369_-	hypothetical protein	NA	NA	NA	NA
WP_015327577.1\|1971438_1971615_-	hypothetical protein	NA	NA	NA	NA
WP_052326475.1\|1972615_1972849_-	DUF4372 domain-containing protein	NA	NA	NA	NA
WP_015327579.1\|1973391_1973706_-	hypothetical protein	NA	NA	NA	NA
WP_015327580.1\|1973792_1974035_-	hypothetical protein	NA	NA	NA	NA
WP_015327581.1\|1975844_1976087_-	hypothetical protein	NA	NA	NA	NA
WP_156801233.1\|1977392_1977911_-	hypothetical protein	NA	NA	NA	NA
WP_015327584.1\|1978499_1978676_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_015327586.1\|1979092_1979878_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_015327587.1\|1980051_1980858_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015327588.1\|1980932_1981118_-	hypothetical protein	NA	NA	NA	NA
WP_156801234.1\|1981380_1981917_-	hypothetical protein	NA	NA	NA	NA
WP_015326059.1\|1982374_1983661_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015327590.1\|1984429_1984993_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_015327591.1\|1984992_1985601_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_041608217.1\|1985620_1986292_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_015327593.1\|1986433_1987690_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.0e-109	53.1
WP_015327594.1\|1987707_1988823_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-70	42.6
WP_015327595.1\|1988842_1989133_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_015327596.1\|1989143_1990430_-	GTPase ObgE	NA	NA	NA	NA
WP_041608218.1\|1990601_1990892_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_015327598.1\|1990907_1991228_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_015327599.1\|1991227_1991539_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_041607784.1\|1991684_1993328_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_015327601.1\|1993406_1994270_-	M50 family metallopeptidase	NA	NA	NA	NA
WP_015327602.1\|1994398_1995526_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_015327603.1\|1995659_1995941_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_015327604.1\|1995958_1996750_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_041607786.1\|1996762_1997368_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_015327606.1\|1997397_1999245_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_015327607.1\|1999219_1999723_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_156801280.1\|1999722_2000616_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_015327609.1\|2000635_2001700_-	rod shape-determining protein	NA	NA	NA	NA
WP_015327610.1\|2001724_2002408_-	DNA repair protein RadC	NA	NA	NA	NA
WP_015327611.1\|2002400_2002976_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_041607788.1\|2003052_2003580_-	Gx transporter family protein	NA	NA	NA	NA
WP_015327613.1\|2003712_2004555_-	FMN-binding protein	NA	NA	NA	NA
WP_015327614.1\|2004659_2005616_-	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	2.4e-09	26.7
WP_041607790.1\|2005642_2006698_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_015327109.1\|2006902_2008093_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015327616.1\|2008293_2010054_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015327617.1\|2010109_2010538_-	YkuS family protein	NA	NA	NA	NA
WP_015327618.1\|2010684_2011074_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_015327619.1\|2011125_2012136_-	RnfABCDGE type electron transport complex subunit B	NA	NA	NA	NA
WP_015327620.1\|2012203_2012785_-	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_083882257.1\|2012801_2013479_-	electron transport complex subunit E	NA	NA	NA	NA
WP_015327622.1\|2013462_2014002_-	RnfABCDGE type electron transport complex subunit G	NA	NA	NA	NA
WP_015327623.1\|2013994_2014912_-	RnfABCDGE type electron transport complex subunit D	NA	NA	NA	NA
WP_015327624.1\|2014923_2016228_-	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_041608221.1\|2016388_2017102_-	PHP domain-containing protein	NA	NA	NA	NA
WP_015327626.1\|2017131_2017464_-	DRTGG domain-containing protein	NA	NA	NA	NA
WP_015327627.1\|2017453_2018758_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_015327628.1\|2018816_2019248_-	ATP-binding protein	NA	NA	NA	NA
WP_015327629.1\|2019281_2019650_-	DRTGG domain-containing protein	NA	NA	NA	NA
WP_015327630.1\|2019710_2020211_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_015327631.1\|2020347_2021619_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_015327632.1\|2021695_2022283_+	flavodoxin family protein	NA	NA	NA	NA
WP_015327633.1\|2022385_2022661_+	hypothetical protein	NA	NA	NA	NA
WP_015327634.1\|2022708_2025366_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.7e-177	43.3
WP_015327635.1\|2025705_2026329_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015327636.1\|2026333_2027233_-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA
WP_015327637.1\|2027293_2027878_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_156801281.1\|2027867_2030222_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.0e-178	44.8
WP_015327639.1\|2030285_2031977_-\|protease	ATP-dependent protease LonB	A0A1V0SHJ7	Hokovirus	8.3e-05	32.6
WP_015327640.1\|2032066_2033320_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.2e-143	61.0

DBSCAN-SWA_4

2248466 : 2254203

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015327835.1\|2248466_2249297_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	3.2e-34	35.1
WP_015327836.1\|2249363_2250371_-	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	4.8e-77	45.7
WP_015327837.1\|2250390_2250960_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-47	54.2
WP_015327838.1\|2250981_2251848_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-99	60.4
WP_015327839.1\|2251895_2252972_-	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	1.9e-07	35.7
WP_015327840.1\|2253015_2254203_-	glycosyltransferase	A0A1V0SAH6	Catovirus	3.6e-07	31.1

DBSCAN-SWA_5

2594309 : 2608824

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015328164.1\|2594309_2598083_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	5.2e-31	25.1
WP_015328165.1\|2598301_2599183_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.4e-10	23.7
WP_015328166.1\|2599271_2599865_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_015328167.1\|2600143_2600452_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015328168.1\|2600503_2602069_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.1e-64	45.3
WP_015328169.1\|2602458_2603064_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.8e-31	41.4
WP_015328170.1\|2603276_2604317_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	8.8e-66	43.2
WP_015328171.1\|2604362_2605793_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.0e-51	32.4
WP_015328172.1\|2605848_2606556_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FHU1	Synechococcus_phage	9.9e-45	43.0
WP_015328173.1\|2606606_2608007_-	adenylosuccinate lyase	A0A1B1ISB0	uncultured_Mediterranean_phage	1.1e-26	27.7
WP_015328174.1\|2608305_2608824_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.9e-27	48.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_019978

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection