CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012348	Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence	0 crisprs	cas14j	0	0	1	0
NZ_CP012347	Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 chromosome, complete genome	2 crisprs	DEDDh,cas3,DinG,WYL,csa3,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	3	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4407 : 45577

Escherichia_phage(23.08%)

integrase,transposase

attL 879:893|attR 34328:34342

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
879:893	attL	NA	NA	NA	NA
WP_001747300.1\|4407_5088_-	DNA methylase	A0A2I7RE86	Vibrio_phage	2.4e-27	36.0
WP_000369839.1\|5469_5826_-	hypothetical protein	NA	NA	NA	NA
WP_000490265.1\|5818_6289_-	hypothetical protein	NA	NA	NA	NA
WP_001746750.1\|6799_7222_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.0e-28	50.8
WP_015059462.1\|7221_8496_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	8.6e-156	64.2
WP_000064276.1\|8577_9552_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	1.1e-83	53.2
WP_000427676.1\|9551_10757_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728917.1\|11171_12113_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_001541562.1\|12144_12711_-	DUF2913 family protein	NA	NA	NA	NA
WP_001527010.1\|12767_13103_-	hypothetical protein	NA	NA	NA	NA
WP_001541564.1\|13286_13703_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9
WP_015059463.1\|13788_14904_-	DNA-binding protein	NA	NA	NA	NA
WP_001746759.1\|15162_15651_+	hypothetical protein	NA	NA	NA	NA
WP_001541566.1\|16305_17046_+	carbonic anhydrase	NA	NA	NA	NA
WP_001240331.1\|17252_17813_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.3e-31	42.7
WP_000098783.1\|17796_19461_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_001576625.1\|19393_20419_+	AAA family ATPase	NA	NA	NA	NA
WP_001121399.1\|20607_21645_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_001746579.1\|22252_23146_+	virulence genes transcriptional activator SpvR	NA	NA	NA	NA
WP_001576629.1\|23319_23484_+	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	3.3e-12	63.0
WP_001541537.1\|23657_24425_+	virulence protein SpvA	NA	NA	NA	NA
WP_001746580.1\|24606_26382_+	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA
WP_001746581.1\|26662_27388_+	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA
WP_001746582.1\|27648_28299_+	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA
WP_001746584.1\|28909_29260_+	helix-turn-helix domain-containing protein	A0A077SLN2	Escherichia_phage	7.1e-44	79.6
WP_071785580.1\|29326_29887_-	inverse autotransporter beta domain-containing protein	NA	NA	NA	NA
WP_000905606.1\|30606_31092_-	membrane protein	NA	NA	NA	NA
WP_001576634.1\|31085_31595_-	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
WP_000082169.1\|32320_33103_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	91.1
WP_000198608.1\|33137_33659_-	hypothetical protein	NA	NA	NA	NA
WP_001266176.1\|33655_33946_-	hypothetical protein	NA	NA	NA	NA
WP_000813641.1\|34253_34472_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
34328:34342	attR	NA	NA	NA	NA
WP_001261283.1\|35216_35447_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001746752.1\|35443_35872_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_000175397.1\|36441_37290_-	YjiK family protein	NA	NA	NA	NA
WP_001816720.1\|37315_37477_-	hypothetical protein	NA	NA	NA	NA
WP_000063791.1\|37737_37950_-	hypothetical protein	NA	NA	NA	NA
WP_024138406.1\|38022_38607_-	hypothetical protein	NA	NA	NA	NA
WP_001020576.1\|39421_39697_-	hypothetical protein	NA	NA	NA	NA
WP_001746754.1\|39683_40448_-	minor fimbrial protein	NA	NA	NA	NA
WP_000704722.1\|40475_41273_-	F4 (K88) fimbria minor subunit FaeH	NA	NA	NA	NA
WP_001178538.1\|41508_41781_-	hypothetical protein	NA	NA	NA	NA
WP_001575507.1\|43239_43899_+	hypothetical protein	NA	NA	NA	NA
WP_001675602.1\|45024_45222_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.8e-25	86.8
WP_001746972.1\|45376_45577_+\|transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	1.6e-16	72.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012347_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012347_1

3855030-3855185

TypeI-E

I-E

Consensus_repeat	Method
AAACCGGTTTATCCCCGCTGGCGCGGGGAACACA	PILER-CR

2 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP012347_1

>merge|NZ_CP012347|1|3855030-3855185|PILER-CR
AAACGTGTTTATCCCCGCTGGCGCGGGGAACACGGCCGCTGGTCAAATTCCCAATCTGAGCAATCCGGTTTATCCCCGCTGGCGCGGGGAACACATAGCCCCGGCAGCGATAGCTAAACCAGTTCCCGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP012347|1|1|3855030-3855185|PILER-CR
AAACGTGTTTATCCCCGCTGGCGCGGGGAACACG	GCCGCTGGTCAAATTCCCAATCTGAGC
AATCCGGTTTATCCCCGCTGGCGCGGGGAACACA	TAGCCCCGGCAGCGATAGCTAAACCAG
TTCCCGGTTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012347.1\|WP_000117945.1\|3858951_3859506_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP012347.1\|WP_000039871.1\|3865210_3865945_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP012347.1\|WP_000206417.1\|3857879_3858938_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP012347.1\|WP_000029737.1\|3861070_3863734_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP012347.1\|WP_001221538.1\|3846900_3847662_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP012347.1\|WP_000517480.1\|3849896_3850208_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP012347.1\|WP_001219253.1\|3848688_3849168_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP012347.1\|WP_000741653.1\|3849167_3849878_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP012347.1\|WP_001092251.1\|3851364_3852804_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP012347.1\|WP_001118109.1\|3850398_3850755_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP012347.1\|WP_000144830.1\|3855573_3856494_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP012347.1\|WP_001173665.1\|3850772_3851378_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP012347.1\|WP_000281484.1\|3856490_3857141_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP012347.1\|WP_000368579.1\|3859502_3861059_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP012347.1\|WP_001290671.1\|3866046_3867759_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP012347.1\|WP_000372384.1\|3852813_3853722_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP012347.1\|WP_000490476.1\|3853972_3855019_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP012347.1\|WP_000134251.1\|3847642_3848692_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP012347.1\|WP_001746886.1\|3864178_3865129_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP012347.1\|WP_000085115.1\|3857122_3857869_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776

Protein	Function_ID	Function_description	E-value
NZ_CP012347.1\|WP_000117945.1\|3858951_3859506_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP012347.1\|WP_000039871.1\|3865210_3865945_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.31774e-138
NZ_CP012347.1\|WP_000206417.1\|3857879_3858938_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP012347.1\|WP_000029737.1\|3861070_3863734_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP012347.1\|WP_001221538.1\|3846900_3847662_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP012347.1\|WP_000517480.1\|3849896_3850208_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP012347.1\|WP_001219253.1\|3848688_3849168_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NZ_CP012347.1\|WP_000741653.1\|3849167_3849878_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP012347.1\|WP_001092251.1\|3851364_3852804_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP012347.1\|WP_001118109.1\|3850398_3850755_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP012347.1\|WP_000144830.1\|3855573_3856494_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
NZ_CP012347.1\|WP_001173665.1\|3850772_3851378_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.05843e-145
NZ_CP012347.1\|WP_000281484.1\|3856490_3857141_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.63277e-74
NZ_CP012347.1\|WP_000368579.1\|3859502_3861059_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP012347.1\|WP_001290671.1\|3866046_3867759_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP012347.1\|WP_000372384.1\|3852813_3853722_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP012347.1\|WP_000490476.1\|3853972_3855019_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP012347.1\|WP_000134251.1\|3847642_3848692_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP012347.1\|WP_001746886.1\|3864178_3865129_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP012347.1\|WP_000085115.1\|3857122_3857869_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48

>NZ_CP012347.1|WP_000490476.1|3853972_3855019_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTDSPAEMLSADYLRQQFTQMGYQSDIRTFNSLFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP012347.1|WP_000372384.1|3852813_3853722_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP012347.1|WP_001092251.1|3851364_3852804_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP012347.1|WP_001173665.1|3850772_3851378_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRYGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP012347.1|WP_001118109.1|3850398_3850755_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP012347.1|WP_000517480.1|3849896_3850208_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP012347.1|WP_000741653.1|3849167_3849878_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP012347.1|WP_001219253.1|3848688_3849168_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP012347.1|WP_000134251.1|3847642_3848692_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFDGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQEAVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP012347.1|WP_001221538.1|3846900_3847662_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP012347.1|WP_000144830.1|3855573_3856494_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP012347.1|WP_000281484.1|3856490_3857141_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSWAFGCGMMMIKPGDDA
>NZ_CP012347.1|WP_000085115.1|3857122_3857869_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP012347.1|WP_000206417.1|3857879_3858938_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP012347.1|WP_000117945.1|3858951_3859506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP012347.1|WP_000368579.1|3859502_3861059_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP012347.1|WP_000029737.1|3861070_3863734_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP012347.1|WP_001746886.1|3864178_3865129_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILL
>NZ_CP012347.1|WP_000039871.1|3865210_3865945_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLKTLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP012347.1|WP_001290671.1|3866046_3867759_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPLMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP012347_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012347_2

3871330-3871722

TypeI-E

I-E

Consensus_repeat	Method
GTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
GTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP012347_2

>merge|NZ_CP012347|2|3871330-3871722|CRISPRCasFinder,CRT,PILER-CR
GGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGCCGGGTTGAGTACCGATCGCATTTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTTCCCCTCCGGATGGCGGGGATGCTCTTATGGCGGTTTATCCCCGCTGGCGCGGGGAACACATCAAACATGGAAACCCCTTTAATGAGAGCAACGGTTTATCCCCGCTGGCGCGGGGAACACAATAATCGGCAATTTGTCCTGGACAGGCACGGCAGTTTATCCCCGCTGGCGCGGGGAACACGAATCTGGAGGCCAACAGCGCGGCGAAATCCTCAGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP012347|2|1|3871330-3871722|CRISPRCasFinder
GGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCCGGGTTGAGTACCGATCGCATTTTTTTCG
GTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCCTCCGGATGGCGGGGATGCTCTTATGGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAACG
GTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA
GTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP012347|2|1|3871330-3871722|CRT
GGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCCGGGTTGAGTACCGATCGCATTTTTTTCG
GTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCCTCCGGATGGCGGGGATGCTCTTATGGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAACG
GTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA
GTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP012347|2|2|3871389-3871722|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCCGGGTTGAGTACCGATCGCATTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCCCCTCCGGATGGCGGGGATGCTCTTATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACATGGAAACCCCTTTAATGAGAGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012347.1\|WP_000842510.1\|3877480_3878068_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP012347.1\|WP_000039871.1\|3865210_3865945_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP012347.1\|WP_000206417.1\|3857879_3858938_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP012347.1\|WP_001044462.1\|3880855_3881629_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP012347.1\|WP_000029737.1\|3861070_3863734_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP012347.1\|WP_000210863.1\|3874206_3875844_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP012347.1\|WP_001207998.1\|3870431_3871229_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP012347.1\|WP_000368579.1\|3859502_3861059_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP012347.1\|WP_001747279.1\|3882633_3883170_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP012347.1\|WP_001072353.1\|3883224_3884256_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012347.1\|WP_000117945.1\|3858951_3859506_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP012347.1\|WP_001290671.1\|3866046_3867759_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP012347.1\|WP_000036734.1\|3872825_3874124_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP012347.1\|WP_000832393.1\|3882166_3882637_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP012347.1\|WP_000178269.1\|3881648_3882152_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP012347.1\|WP_001199961.1\|3872018_3872690_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP012347.1\|WP_000108313.1\|3869981_3870344_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP012347.1\|WP_000210451.1\|3876071_3876872_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP012347.1\|WP_000210929.1\|3867758_3869558_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP012347.1\|WP_001746886.1\|3864178_3865129_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP012347.1\|WP_000842510.1\|3877480_3878068_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	1.73148e-99
NZ_CP012347.1\|WP_000039871.1\|3865210_3865945_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.31774e-138
NZ_CP012347.1\|WP_000206417.1\|3857879_3858938_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
NZ_CP012347.1\|WP_001044462.1\|3880855_3881629_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP012347.1\|WP_000029737.1\|3861070_3863734_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP012347.1\|WP_000210863.1\|3874206_3875844_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP012347.1\|WP_001207998.1\|3870431_3871229_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
NZ_CP012347.1\|WP_000368579.1\|3859502_3861059_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP012347.1\|WP_001747279.1\|3882633_3883170_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	4.47295e-120
NZ_CP012347.1\|WP_000117945.1\|3858951_3859506_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
NZ_CP012347.1\|WP_001290671.1\|3866046_3867759_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP012347.1\|WP_000036734.1\|3872825_3874124_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP012347.1\|WP_000832393.1\|3882166_3882637_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
NZ_CP012347.1\|WP_000178269.1\|3881648_3882152_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	3.31433e-103
NZ_CP012347.1\|WP_001199961.1\|3872018_3872690_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP012347.1\|WP_000108313.1\|3869981_3870344_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP012347.1\|WP_000210451.1\|3876071_3876872_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP012347.1\|WP_000210929.1\|3867758_3869558_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP012347.1\|WP_001746886.1\|3864178_3865129_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP012347.1|WP_001207998.1|3870431_3871229_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP012347.1|WP_000108313.1|3869981_3870344_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP012347.1|WP_000210929.1|3867758_3869558_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNLLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIALAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARSMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP012347.1|WP_001290671.1|3866046_3867759_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPLMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP012347.1|WP_000039871.1|3865210_3865945_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLKTLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP012347.1|WP_001746886.1|3864178_3865129_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILL
>NZ_CP012347.1|WP_000029737.1|3861070_3863734_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP012347.1|WP_000368579.1|3859502_3861059_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP012347.1|WP_000117945.1|3858951_3859506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>NZ_CP012347.1|WP_000206417.1|3857879_3858938_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>NZ_CP012347.1|WP_001199961.1|3872018_3872690_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP012347.1|WP_000036734.1|3872825_3874124_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP012347.1|WP_000210863.1|3874206_3875844_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP012347.1|WP_000210451.1|3876071_3876872_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP012347.1|WP_000842510.1|3877480_3878068_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATDATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP012347.1|WP_001044462.1|3880855_3881629_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPTAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP012347.1|WP_000178269.1|3881648_3882152_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP012347.1|WP_000832393.1|3882166_3882637_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP012347.1|WP_001747279.1|3882633_3883170_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWTVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP012347.1|WP_001072353.1|3883224_3884256_+|hypothetical-protein
MNQKVLFFLSIIAYPGITQAINQNVMIEPLVIRDSTNYLVLPQAQQAEFSQCKSWPHDSTVIPAKYEATLLNGSLISMFIGGITVNLYTTADVKVNTDAQCTLLNGNFPGYYGITCFVTGYDTDKAVPVRTDNGMSIIESKLYATGTMRYITEIPMDGSGFQGMAIGGAVVINTGAITPTPNTGVISNITMPPLYDPGFIFTVPGCGQYKYHSGTGSVFTNNNSTYTVASPIGFITASLDKNSVLNYNELHYNDKAENIELGKIYLMYKEKNVTWGEGFDYTLENSTINVVCADSRIKTNVDYQCRNGDMGACNNGELGRIIGNWERINVDTNCSVTVILPWQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012347_1	1.1\|3855064\|27\|NZ_CP012347\|PILER-CR	3855064-3855090	27	MK449011	Streptococcus phage Javan92, complete genome	36161-36187	5	0.815
NZ_CP012347_1	1.1\|3855064\|27\|NZ_CP012347\|PILER-CR	3855064-3855090	27	MK448835	Streptococcus phage Javan93, complete genome	36161-36187	5	0.815
NZ_CP012347_1	1.1\|3855064\|27\|NZ_CP012347\|PILER-CR	3855064-3855090	27	MK448836	Streptococcus phage Javan95, complete genome	37404-37430	5	0.815
NZ_CP012347_1	1.1\|3855064\|27\|NZ_CP012347\|PILER-CR	3855064-3855090	27	MK448825	Streptococcus phage Javan639, complete genome	37404-37430	5	0.815
NZ_CP012347_2	2.11\|3871662\|32\|NZ_CP012347\|PILER-CR	3871662-3871693	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
NZ_CP012347_2	2.9\|3871540\|32\|NZ_CP012347\|PILER-CR	3871540-3871571	32	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	103231-103262	10	0.688
NZ_CP012347_2	2.11\|3871662\|32\|NZ_CP012347\|PILER-CR	3871662-3871693	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688

1. spacer 1.1|3855064|27|NZ_CP012347|PILER-CR matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 5, identity: 0.815

gccgctggtcaaattcccaatctgagc	CRISPR spacer
acatcttgacaaattcccaatctgagc	Protospacer
.*  ** * ******************

2. spacer 1.1|3855064|27|NZ_CP012347|PILER-CR matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 5, identity: 0.815

gccgctggtcaaattcccaatctgagc	CRISPR spacer
acatcttgacaaattcccaatctgagc	Protospacer
.*  ** * ******************

3. spacer 1.1|3855064|27|NZ_CP012347|PILER-CR matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 5, identity: 0.815

gccgctggtcaaattcccaatctgagc	CRISPR spacer
acatcttgacaaattcccaatctgagc	Protospacer
.*  ** * ******************

4. spacer 1.1|3855064|27|NZ_CP012347|PILER-CR matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 5, identity: 0.815

gccgctggtcaaattcccaatctgagc	CRISPR spacer
acatcttgacaaattcccaatctgagc	Protospacer
.*  ** * ******************

5. spacer 2.11|3871662|32|NZ_CP012347|PILER-CR matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gaatctggagggcgacagcgcggtcgaccctg	Protospacer
*********** *.*********. .* .*.

6. spacer 2.9|3871540|32|NZ_CP012347|PILER-CR matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

atcaaacatggaaacccctttaatgagagcaa	CRISPR spacer
ctaaaacatggaaaccactgtaatgacgaatc	Protospacer
 * ************* ** ****** ..

7. spacer 2.11|3871662|32|NZ_CP012347|PILER-CR matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gtggtcataggccatcagcgcggcgatatccc	Protospacer
* . ... ****** *********** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1656047 : 1665218

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569175.1\|1656047_1656995_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.6e-10	27.8
WP_000824854.1\|1656978_1657710_+	ABC transporter permease	NA	NA	NA	NA
WP_001747411.1\|1657690_1657798_-	protein YohO	NA	NA	NA	NA
WP_001240413.1\|1657857_1658589_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.3e-100	87.9
WP_000272844.1\|1658811_1660497_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.4e-278	90.9
WP_000598636.1\|1660493_1661213_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950414.1\|1661259_1661727_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
WP_001197951.1\|1661783_1662314_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703145.1\|1662485_1662944_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
WP_000195354.1\|1663184_1665218_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	26.9

DBSCAN-SWA_2

1732413 : 1742920

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144951.1\|1732413_1733817_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5
WP_000981469.1\|1733994_1734888_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|1735264_1736350_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023658.1\|1736349_1737249_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857535.1\|1737296_1738175_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_000973709.1\|1738175_1738727_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_000018223.1\|1738732_1739707_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|1739722_1740496_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565913.1\|1740500_1741580_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000126349.1\|1741606_1742920_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_3

2553963 : 2644256

Enterobacteria_phage(27.08%)

holin,integrase,tail,portal,lysis,protease,tRNA,terminase

attL 2620635:2620649|attR 2646025:2646039

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001221017.1\|2553963_2554659_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_000128810.1\|2554716_2556627_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	8.5e-91	32.4
WP_000029550.1\|2556757_2557102_+	RidA family protein	NA	NA	NA	NA
WP_000457328.1\|2557107_2557287_-	YoaH family protein	NA	NA	NA	NA
WP_000978451.1\|2557367_2558732_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	3.6e-43	34.5
WP_000381544.1\|2558735_2559314_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_000624273.1\|2559577_2560942_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_001192535.1\|2561079_2562681_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_000421815.1\|2562702_2564262_-	CNNM family cation transport protein YoaE	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
WP_000150523.1\|2564734_2565703_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
WP_000406920.1\|2565755_2566556_+	PTS mannose transporter subunit IIC	NA	NA	NA	NA
WP_001518647.1\|2566568_2567420_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
WP_001518359.1\|2568346_2568913_+	manganese efflux pump MntP	NA	NA	NA	NA
WP_000010915.1\|2568909_2569719_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
WP_000730310.1\|2569784_2571530_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_001062678.1\|2571749_2571959_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
WP_001537930.1\|2571971_2572115_-	YobF family protein	NA	NA	NA	NA
WP_000714548.1\|2573120_2573264_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
WP_001236777.1\|2573421_2573661_+	hypothetical protein	NA	NA	NA	NA
WP_001262195.1\|2573872_2574664_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_001747327.1\|2574839_2576213_+	MFS transporter	NA	NA	NA	NA
WP_000984498.1\|2576260_2577142_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001091237.1\|2577334_2579383_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000431401.1\|2579402_2580089_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_000145732.1\|2580186_2580771_-	GAF domain-containing protein	NA	NA	NA	NA
WP_001207294.1\|2580812_2582096_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_014341101.1\|2582064_2584698_+	PqiB family protein	NA	NA	NA	NA
WP_023164993.1\|2584775_2586215_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_024131108.1\|2586332_2586569_+	DUF1480 family protein	NA	NA	NA	NA
WP_000457838.1\|2586679_2586871_+	YebW family protein	NA	NA	NA	NA
WP_000986172.1\|2586889_2587540_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	5.5e-58	50.9
WP_001134856.1\|2587763_2587928_-	membrane protein	NA	NA	NA	NA
WP_000182072.1\|2588213_2588936_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_000422882.1\|2589619_2590015_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
WP_000030934.1\|2590344_2590821_+	hypothetical protein	NA	NA	NA	NA
WP_001025514.1\|2591193_2591613_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001576019.1\|2591985_2592255_+	hypothetical protein	B6SCX2	Bacteriophage	3.1e-07	47.9
WP_001576018.1\|2592420_2592561_+	hypothetical protein	NA	NA	NA	NA
WP_001233445.1\|2595698_2596613_+	DMT family transporter	NA	NA	NA	NA
WP_000480735.1\|2596745_2596904_+	hypothetical protein	NA	NA	NA	NA
WP_000848072.1\|2596913_2597528_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_000457876.1\|2598675_2598801_-	hypothetical protein	NA	NA	NA	NA
WP_001576015.1\|2599370_2599571_+	hypothetical protein	NA	NA	NA	NA
WP_001687735.1\|2599667_2600168_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-63	77.4
WP_000178848.1\|2602693_2602936_-	hypothetical protein	NA	NA	NA	NA
WP_072100756.1\|2602974_2603838_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
WP_143552158.1\|2603833_2606194_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	67.4
WP_001576012.1\|2606397_2607102_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
WP_000606352.1\|2607005_2607737_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.0e-113	75.6
WP_001152416.1\|2607746_2608442_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
WP_000877926.1\|2608531_2609065_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_000725267.1\|2609181_2609679_-	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000978295.1\|2609777_2610110_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_077904894.1\|2610106_2613094_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.1e-265	62.0
WP_010989009.1\|2613173_2613503_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_000478857.1\|2613499_2613898_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_000132760.1\|2613943_2614693_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.1e-89	68.2
WP_000196704.1\|2614704_2615106_-\|tail	phage tail protein U	K7PHM6	Enterobacterial_phage	3.8e-41	59.4
WP_000453192.1\|2615102_2615669_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
WP_000774239.1\|2615649_2615949_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_001107908.1\|2615941_2616265_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_010989008.1\|2616355_2618437_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001009212.1\|2618360_2619908_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.3e-174	63.6
WP_000196190.1\|2619904_2620111_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_000989241.1\|2620107_2622246_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
2620635:2620649	attL	NA	NA	NA	NA
WP_000371784.1\|2622202_2622736_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_001541990.1\|2622943_2623423_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000984586.1\|2623440_2623893_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001574216.1\|2623876_2624206_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001574215.1\|2624481_2625168_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_001574213.1\|2626350_2626875_-	hypothetical protein	NA	NA	NA	NA
WP_001097218.1\|2626971_2627661_-	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-60	54.9
WP_000784710.1\|2627790_2628018_-	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
WP_000940753.1\|2628014_2628614_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
WP_000972672.1\|2628677_2628983_-	hypothetical protein	NA	NA	NA	NA
WP_001237395.1\|2629614_2631594_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_000529511.1\|2631990_2633121_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_000089416.1\|2633407_2633803_-	DUF977 family protein	A0A088CBK9	Shigella_phage	9.8e-18	38.8
WP_158000546.1\|2633815_2634358_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-67	75.5
WP_000729536.1\|2634269_2635268_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.1e-121	67.3
WP_001574210.1\|2635314_2635809_-	hypothetical protein	NA	NA	NA	NA
WP_001033912.1\|2635795_2636050_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_001574209.1\|2636148_2636547_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_158001424.1\|2636988_2637219_-	hypothetical protein	NA	NA	NA	NA
WP_000103933.1\|2637553_2637829_+	hypothetical protein	NA	NA	NA	NA
WP_000682660.1\|2637832_2638039_+	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
WP_000799627.1\|2638114_2638450_+	hypothetical protein	NA	NA	NA	NA
WP_000023717.1\|2638590_2641281_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	4.0e-118	72.8
WP_053294625.1\|2641273_2642104_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	2.9e-104	71.6
WP_000280163.1\|2642150_2642336_+	DUF1187 family protein	NA	NA	NA	NA
WP_001574207.1\|2642626_2642863_+	hypothetical protein	NA	NA	NA	NA
WP_001575998.1\|2642923_2643202_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
WP_000087636.1\|2643176_2644256_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
2646025:2646039	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2947591 : 2954904

Ralstonia_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001746929.1\|2947591_2947969_+	hypothetical protein	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|2948130_2948328_+	hypothetical protein	NA	NA	NA	NA
WP_000934060.1\|2948540_2950817_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.0e-164	42.1
WP_000520789.1\|2950847_2951168_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2951491_2951713_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125872.1\|2951842_2953789_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_001201751.1\|2953785_2954904_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_5

3627705 : 3693893

Salmonella_phage(82.22%)

integrase,head,tail,plate,transposase,portal,lysis,capsid,tRNA,terminase

attL 3678375:3678390|attR 3690842:3690857

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000469804.1\|3627705_3628473_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|3628517_3629066_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|3629084_3629333_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460053.1\|3629585_3630947_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|3631112_3631904_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|3631923_3633210_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001287926.1\|3633330_3633936_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|3633970_3634561_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059151.1\|3634684_3635563_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880964.1\|3635648_3637310_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|3637458_3637797_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|3637962_3638253_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|3638242_3638719_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|3638868_3639351_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000533863.1\|3651506_3652916_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_072200842.1\|3655099_3656263_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_000391794.1\|3656820_3657303_+	hypothetical protein	Q19UP0	Mannheimia_phage	1.6e-17	34.3
WP_000980501.1\|3657329_3657548_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-28	77.8
WP_001747387.1\|3657616_3658717_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.7e-176	88.3
WP_000980391.1\|3658713_3659199_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
WP_001747386.1\|3659195_3662273_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.2
WP_000763311.1\|3662265_3662385_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281009.1\|3662399_3662702_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_001207656.1\|3662756_3663272_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046140.1\|3663281_3664454_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.7e-204	90.5
WP_000905027.1\|3664596_3665163_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_072200837.1\|3665190_3665589_+\|tail	phage tail protein	A0A0F7LBW5	Escherichia_phage	1.6e-12	38.3
WP_001747385.1\|3665591_3666023_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	6.9e-49	65.5
WP_001747384.1\|3666003_3666390_-\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	2.5e-26	58.3
WP_001086836.1\|3667885_3668491_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.5e-110	92.5
WP_000268280.1\|3668483_3669392_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.8e-143	90.4
WP_000177590.1\|3669378_3669738_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	9.5e-52	86.6
WP_000993775.1\|3669734_3670313_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	4.2e-94	87.0
WP_000829141.1\|3670381_3670828_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.5e-62	84.9
WP_001039935.1\|3670820_3671252_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	6.4e-71	92.3
WP_001337513.1\|3671347_3671776_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.9e-47	77.3
WP_000727855.1\|3671772_3672150_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	6.7e-16	40.0
WP_001069909.1\|3672151_3672664_-	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000171568.1\|3672644_3672860_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868192.1\|3672863_3673067_-\|tail	tail protein X	E5G6M9	Salmonella_phage	6.8e-31	91.0
WP_000673523.1\|3673066_3673531_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_000059191.1\|3673626_3674277_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_001747382.1\|3674280_3675339_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.8e-181	93.4
WP_001747381.1\|3675355_3676189_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.8e-123	90.3
WP_001098431.1\|3676331_3678098_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_001747380.1\|3678097_3679132_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.6e-174	89.5
3678375:3678390	attL	NA	NA	NA	NA
WP_001747379.1\|3679187_3679826_-	hypothetical protein	NA	NA	NA	NA
WP_001747378.1\|3679831_3680851_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_001217575.1\|3681207_3681441_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3681451_3681640_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001747377.1\|3681793_3684208_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.8
WP_001747376.1\|3684204_3685062_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.2e-161	97.5
WP_000752613.1\|3685058_3685286_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_001747375.1\|3685285_3685519_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.3e-30	93.5
WP_001747374.1\|3685586_3685928_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.6e-55	97.3
WP_000956176.1\|3686045_3686342_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000460856.1\|3686349_3686859_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-83	95.3
WP_000102105.1\|3686891_3687134_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
WP_001747373.1\|3687250_3687883_+	phage repressor protein cI	A0A1S6KZZ7	Salmonella_phage	3.7e-67	59.5
WP_001747372.1\|3687886_3688909_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	8.9e-188	92.4
WP_001747371.1\|3688916_3689963_+	hypothetical protein	NA	NA	NA	NA
WP_001142974.1\|3690190_3690784_+	hypothetical protein	NA	NA	NA	NA
WP_000445376.1\|3691182_3691986_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	1.2e-62	44.7
3690842:3690857	attR	NA	NA	NA	NA
WP_102047853.1\|3692781_3693893_-\|transposase	IS3-like element IS1351 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-07	25.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012348

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012347

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection