CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	0 crisprs	RT	5
NC_020060	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence	0 crisprs	NA	1
NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	0 crisprs	PD-DExK,WYL,csa3	1
NC_020059	Rhizobium tropici CIAT 899, complete sequence	0 crisprs	WYL,csa3,cas3	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

55574 : 111615

Corynebacterium_phage(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015341970.1\|55574_56690_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_004119985.1\|56729_57002_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004119987.1\|57276_58314_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_135488308.1\|58540_59170_-	hypothetical protein	NA	NA	NA	NA
WP_120764172.1\|60214_60466_+	hypothetical protein	NA	NA	NA	NA
WP_120764173.1\|60861_61086_-	hypothetical protein	NA	NA	NA	NA
WP_004119995.1\|61209_61527_-	integration host factor subunit beta	A3E2K9	Sodalis_phage	1.9e-08	39.1
WP_004110519.1\|62073_63270_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-90	46.3
WP_004120006.1\|63602_64784_+	hypothetical protein	NA	NA	NA	NA
WP_004120008.1\|65794_66790_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004120011.1\|67739_68804_-	ATP-dependent DNA ligase	A0A068CDF3	Rhizobium_phage	8.6e-125	63.2
WP_004120014.1\|68800_69238_-	Ku protein	NA	NA	NA	NA
WP_004120015.1\|69674_70181_+	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	3.8e-14	38.8
WP_004120017.1\|70854_71757_-	hypothetical protein	NA	NA	NA	NA
WP_004120019.1\|71753_73301_-	hypothetical protein	NA	NA	NA	NA
WP_004120020.1\|73482_74481_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_028755176.1\|74586_75930_-	cytochrome P450	NA	NA	NA	NA
WP_004120024.1\|75929_76775_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.6e-12	27.7
WP_004120026.1\|76761_77070_-	ferredoxin	NA	NA	NA	NA
WP_004120028.1\|77071_78364_-	cytochrome P450	A0A2I2L481	Orpheovirus	1.3e-05	20.7
WP_004120030.1\|78453_79656_-	cytochrome P450	NA	NA	NA	NA
WP_004120034.1\|80984_81260_+	hypothetical protein	NA	NA	NA	NA
WP_004120036.1\|82696_83953_+	glycosyltransferase	NA	NA	NA	NA
WP_004120039.1\|84270_85131_+	alpha/beta hydrolase	A0A249XU20	Mycobacterium_phage	1.6e-12	37.7
WP_004120041.1\|85966_88156_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	7.6e-43	32.8
WP_004120043.1\|88465_88870_+	DoxX family protein	NA	NA	NA	NA
WP_004120045.1\|89453_90494_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004119987.1\|91563_92601_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004120053.1\|94250_95225_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004120055.1\|95772_96306_-	DUF4168 domain-containing protein	NA	NA	NA	NA
WP_004120058.1\|96475_97504_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004120061.1\|97716_98829_-	histidinol-phosphate aminotransferase family protein	NA	NA	NA	NA
WP_004120063.1\|99187_99448_+	hypothetical protein	NA	NA	NA	NA
WP_004111509.1\|101083_102412_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_085999210.1\|103377_104437_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_120671006.1\|106097_106664_+	hypothetical protein	NA	NA	NA	NA
WP_004112688.1\|106928_107918_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004112689.1\|108031_108622_-	NodA family N-acyltransferase	NA	NA	NA	NA
WP_004112691.1\|108882_109131_+	hypothetical protein	NA	NA	NA	NA
WP_004112693.1\|109197_109953_-	aquaporin	NA	NA	NA	NA
WP_004110519.1\|110418_111615_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-90	46.3

DBSCAN-SWA_2

216868 : 277695

Corynebacterium_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004110519.1\|216868_218065_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-90	46.3
WP_004125917.1\|218198_218423_+	hypothetical protein	NA	NA	NA	NA
WP_004125924.1\|218576_219929_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_004125926.1\|220118_221660_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_004125927.1\|221646_222267_+	response regulator	NA	NA	NA	NA
WP_015341887.1\|222586_224086_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.9e-19	28.2
WP_015341995.1\|224087_224822_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	7.7e-32	32.5
WP_004125929.1\|225186_225846_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_135488301.1\|226130_226439_-	hypothetical protein	NA	NA	NA	NA
WP_004125932.1\|227344_227812_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004125935.1\|228077_229376_-	replication protein C	NA	NA	NA	NA
WP_004125937.1\|229717_230056_-	hypothetical protein	NA	NA	NA	NA
WP_004125939.1\|230245_230707_-	hypothetical protein	NA	NA	NA	NA
WP_004125942.1\|231592_232138_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004125950.1\|232404_232617_+	hypothetical protein	NA	NA	NA	NA
WP_015341997.1\|232856_234053_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.5e-88	49.7
WP_004125953.1\|234412_235339_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004125955.1\|235666_236257_+	NodA family N-acyltransferase	NA	NA	NA	NA
WP_004125963.1\|236253_236913_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA
WP_004125966.1\|236924_238283_+	chitooligosaccharide synthase NodC	M1HPL2	Paramecium_bursaria_Chlorella_virus	3.1e-10	25.5
WP_004125970.1\|238200_238917_+	nodulation S family protein	NA	NA	NA	NA
WP_004125972.1\|238952_240680_+	nodulation protein NodU	A0A292GAM4	Xanthomonas_phage	3.0e-34	29.0
WP_081598441.1\|240583_241582_+	nodulation factor ABC transporter ATP-binding protein NodI	W6JKT0	Anomala_cuprea_entomopoxvirus	4.5e-27	28.4
WP_004125979.1\|241585_242371_+	ABC transporter permease	NA	NA	NA	NA
WP_004125982.1\|242403_242853_+	aldo/keto reductase	NA	NA	NA	NA
WP_004125985.1\|242955_243705_+	nodulation protein H	NA	NA	NA	NA
WP_004125988.1\|243710_244610_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_004125998.1\|246651_246972_+	hypothetical protein	NA	NA	NA	NA
WP_004126001.1\|247022_247277_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_004126005.1\|247874_249212_-\|transposase	ISNCY-like element ISRtr6 family transposase	NA	NA	NA	NA
WP_154660803.1\|249479_249653_+	hypothetical protein	NA	NA	NA	NA
WP_004126008.1\|250606_250915_-	hypothetical protein	NA	NA	NA	NA
WP_004126015.1\|251361_251724_-	hypothetical protein	NA	NA	NA	NA
WP_037136675.1\|251913_252213_-	hypothetical protein	NA	NA	NA	NA
WP_004126018.1\|252829_253711_-	SIR2 family protein	NA	NA	NA	NA
WP_004126022.1\|253745_253958_-	putative nitrogen fixation protein NifT	NA	NA	NA	NA
WP_004126025.1\|253954_254278_-	nitrogen fixation protein NifZ	NA	NA	NA	NA
WP_004126027.1\|254371_254566_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_004126030.1\|254599_256081_-	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA
WP_004126033.1\|256313_258062_-	nif-specific transcriptional activator NifA	NA	NA	NA	NA
WP_004126035.1\|258238_258538_-	ferredoxin family protein	NA	NA	NA	NA
WP_004126038.1\|258550_259855_-	FAD-binding protein	NA	NA	NA	NA
WP_004126048.1\|259867_260980_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004126051.1\|260992_261844_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_004126055.1\|262025_262409_-	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA
WP_004126059.1\|262604_263831_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	5.5e-43	41.7
WP_004126062.1\|263878_264520_-	iron-sulfur cluster assembly scaffold protein	NA	NA	NA	NA
WP_004126065.1\|264545_264866_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_004126068.1\|265350_266007_+	nitrogen fixation protein NifQ	NA	NA	NA	NA
WP_004126070.1\|266052_267495_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_004126073.1\|267574_268114_-	peroxiredoxin	M1I839	Pelagibacter_phage	4.7e-47	57.5
WP_004126075.1\|268832_269711_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_004126078.1\|270012_270741_-	aspartate/glutamate/uridylate kinase	NA	NA	NA	NA
WP_004126081.1\|271740_272307_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_004126084.1\|272422_273925_+	SDR family oxidoreductase	L7Y2R3	Megavirus	3.3e-05	35.1
WP_004126087.1\|274171_275227_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_004126090.1\|275440_276262_+\|transposase	IS5-like element ISRtr3 family transposase	NA	NA	NA	NA
WP_004126092.1\|276312_277695_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

298095 : 352298

Stx2-converting_phage(25.0%)

integrase,protease,transposase

attL 295268:295284|attR 338316:338332

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
295268:295284	attL	NA	NA	NA	NA
WP_004126132.1\|298095_298929_-\|transposase	IS5-like element ISRtr4 family transposase	A0A0M5M147	Mycobacterium_phage	5.5e-10	26.8
WP_004126135.1\|299187_300156_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_004126138.1\|300399_301674_+	diaminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	3.1e-20	25.2
WP_004126142.1\|301954_303553_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.7e-73	35.1
WP_081598442.1\|303628_303823_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004126144.1\|305038_305971_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004126146.1\|305967_306975_+\|integrase	site-specific integrase	A0A0K2CP59	Brevibacillus_phage	3.0e-10	24.2
WP_141694186.1\|307051_307174_-\|transposase	transposase	NA	NA	NA	NA
WP_004126148.1\|307170_307554_-\|transposase	transposase	NA	NA	NA	NA
WP_004126149.1\|307740_308013_-	hypothetical protein	NA	NA	NA	NA
WP_004126151.1\|308040_308934_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_004126157.1\|310786_311587_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.5e-57	44.4
WP_004126170.1\|312701_313571_-	cupin-like domain-containing protein	NA	NA	NA	NA
WP_004126178.1\|315466_316300_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	7.9e-09	26.5
WP_051043303.1\|316429_316888_-	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	7.1e-20	47.9
WP_004126182.1\|317823_318171_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.4e-28	52.8
WP_004126183.1\|318167_318545_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004126188.1\|319144_320392_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004121997.1\|321428_321884_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	3.1e-07	42.5
WP_004121998.1\|321864_322218_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.6e-19	46.2
WP_015342012.1\|323059_324091_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004128843.1\|326062_327205_-	hypothetical protein	NA	NA	NA	NA
WP_154660804.1\|327420_327597_+	hypothetical protein	NA	NA	NA	NA
WP_004128845.1\|327669_328515_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.8e-38	34.7
WP_004128847.1\|328593_329877_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004128849.1\|330490_331537_+	peptidase C45	NA	NA	NA	NA
WP_015342013.1\|331702_332197_+	hypothetical protein	NA	NA	NA	NA
WP_004128850.1\|332470_334252_-	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_004128852.1\|334503_335694_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_004128854.1\|336241_337345_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004128856.1\|337482_338577_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-27	38.4
338316:338332	attR	NA	NA	NA	NA
WP_004128865.1\|338595_340368_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_004128868.1\|340749_341634_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_004128870.1\|341868_343194_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_004128874.1\|343206_343743_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_004128877.1\|343915_345094_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_004128880.1\|345275_345743_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_004128884.1\|345884_347069_+	amidohydrolase	NA	NA	NA	NA
WP_004128886.1\|347098_348088_+	hydroxyectoine utilization dehydratase EutB	NA	NA	NA	NA
WP_004128888.1\|348084_349074_+	ectoine utilization protein EutC	NA	NA	NA	NA
WP_004128890.1\|349195_349912_+	hypothetical protein	NA	NA	NA	NA
WP_004128891.1\|349942_351124_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_004128892.1\|351242_352298_+\|protease	cysteine protease	NA	NA	NA	NA

DBSCAN-SWA_4

372609 : 425554

Stx2-converting_phage(37.5%)

integrase,protease,transposase

attL 361771:361788|attR 396441:396458

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
361771:361788	attL	NA	NA	NA	NA
WP_004126144.1\|372609_373542_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004126146.1\|373538_374546_+\|integrase	site-specific integrase	A0A0K2CP59	Brevibacillus_phage	3.0e-10	24.2
WP_085999213.1\|374678_374906_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_004128951.1\|374954_376529_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.0e-74	34.7
WP_004128954.1\|376525_377089_+	UPF0149 family protein	NA	NA	NA	NA
WP_004128957.1\|377269_378415_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_004128985.1\|378706_379636_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004128988.1\|379659_380409_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_004128992.1\|380424_381300_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_004128995.1\|381296_382475_-	CoA transferase	NA	NA	NA	NA
WP_015342015.1\|382474_383668_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_004128999.1\|383816_384713_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004129003.1\|386652_387723_-\|protease	cysteine protease	NA	NA	NA	NA
WP_004129006.1\|387783_389022_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_004129017.1\|389572_389806_+	hypothetical protein	NA	NA	NA	NA
WP_004129019.1\|389786_391445_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-103	43.8
WP_004129022.1\|391513_391861_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-27	51.4
WP_004126183.1\|391857_392235_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_028755383.1\|392657_393401_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-28	38.9
WP_004129028.1\|393523_394498_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_004129031.1\|394554_395391_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_081670487.1\|396069_396348_+	glutamate dehydrogenase	NA	NA	NA	NA
WP_004129043.1\|398391_399681_-	citrate (Si)-synthase	NA	NA	NA	NA
396441:396458	attR	NA	NA	NA	NA
WP_076611960.1\|399821_401049_+\|transposase	IS3-like element ISRtr2 family transposase	Q8W6R2	Burkholderia_virus	4.5e-101	65.6
WP_015342020.1\|401148_401328_-	hypothetical protein	NA	NA	NA	NA
WP_004122955.1\|401391_402984_-	isocitrate lyase	NA	NA	NA	NA
WP_004122953.1\|403108_404506_+	DUF2083 domain-containing protein	NA	NA	NA	NA
WP_004122951.1\|404797_405694_+	MFS transporter	NA	NA	NA	NA
WP_004122949.1\|405872_406502_+	hypothetical protein	NA	NA	NA	NA
WP_004122947.1\|406498_407905_+	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	3.0e-32	27.5
WP_004122943.1\|407901_408984_+	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	9.5e-47	33.8
WP_004122938.1\|408980_409604_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_004122936.1\|409610_410795_+	hypothetical protein	NA	NA	NA	NA
WP_004122931.1\|411551_413459_-	protein kinase	NA	NA	NA	NA
WP_004122929.1\|413455_414241_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_004122927.1\|414222_414903_-	VWA domain-containing protein	NA	NA	NA	NA
WP_051043315.1\|416815_417340_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004122924.1\|418581_419235_-	coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_004122921.1\|420430_420697_+	hypothetical protein	NA	NA	NA	NA
WP_004122919.1\|420933_421155_-	hypothetical protein	NA	NA	NA	NA
WP_081598434.1\|421377_421722_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_004122917.1\|422014_422593_+	SLATT domain-containing protein	NA	NA	NA	NA
WP_004122915.1\|422598_423915_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_004118201.1\|424132_425554_+\|transposase	ISNCY family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

446456 : 487648

Enterobacteria_phage(30.77%)

integrase,transposase

attL 471821:471837|attR 477790:477806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028754964.1\|446456_447977_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	6.7e-22	27.9
WP_051043305.1\|449679_450408_+	DUF4041 domain-containing protein	Q5G8X0	Enterobacteria_phage	5.8e-24	39.5
WP_015342012.1\|451659_452691_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004118312.1\|453529_453883_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	6.1e-19	44.6
WP_120671011.1\|453863_454313_-\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.4e-07	48.6
WP_085999215.1\|454364_455117_+	GIY-YIG nuclease family protein	Q9MC01	Enterobacteria_phage	9.0e-36	54.0
WP_004118310.1\|455361_456102_-	hypothetical protein	NA	NA	NA	NA
WP_004118308.1\|456635_457046_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004118306.1\|457373_458408_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004118304.1\|459202_460327_+	hypothetical protein	NA	NA	NA	NA
WP_004118303.1\|460363_460684_+	hypothetical protein	NA	NA	NA	NA
WP_004118301.1\|460716_461040_+	hypothetical protein	NA	NA	NA	NA
WP_004118299.1\|461432_462023_-	DUF433 domain-containing protein	NA	NA	NA	NA
WP_004118296.1\|462104_463394_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_004118293.1\|463393_463741_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004118290.1\|464013_464667_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_004118284.1\|464663_465080_+	hypothetical protein	NA	NA	NA	NA
WP_004118282.1\|465275_466919_+	MFS transporter	NA	NA	NA	NA
WP_004118281.1\|467299_468937_+	MFS transporter	NA	NA	NA	NA
WP_004118278.1\|469691_470048_+	hypothetical protein	NA	NA	NA	NA
WP_041678080.1\|470466_470886_+\|transposase	transposase	NA	NA	NA	NA
WP_015342033.1\|470885_471752_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	8.8e-27	31.1
471821:471837	attL	NA	NA	NA	NA
WP_004118273.1\|472727_473990_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.5e-06	19.6
WP_004118271.1\|473986_474976_+\|integrase	tyrosine-type recombinase/integrase	A0A1Q1PVS7	Staphylococcus_phage	1.5e-06	22.4
WP_004118264.1\|474959_475976_+\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	8.2e-08	25.8
WP_015342034.1\|476966_477722_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.1e-53	44.6
WP_004118262.1\|478237_478465_-	hypothetical protein	NA	NA	NA	NA
477790:477806	attR	NA	NA	NA	NA
WP_004118261.1\|478592_479039_+	hypothetical protein	NA	NA	NA	NA
WP_004118260.1\|479026_479422_+	hypothetical protein	NA	NA	NA	NA
WP_004118259.1\|479570_479945_-	hypothetical protein	NA	NA	NA	NA
WP_004121997.1\|480110_480566_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	3.1e-07	42.5
WP_004121998.1\|480546_480900_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.6e-19	46.2
WP_015342012.1\|481741_482773_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004121984.1\|484130_484382_-	hypothetical protein	NA	NA	NA	NA
WP_004119985.1\|484474_484747_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004129017.1\|485775_486009_+	hypothetical protein	NA	NA	NA	NA
WP_004129019.1\|485989_487648_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-103	43.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_020060

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66520 : 109986

Bacillus_phage(14.29%)

integrase,transposase

attL 80129:80146|attR 112829:112846

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004110519.1\|66520_67717_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-90	46.3
WP_015341843.1\|68234_68765_-	hypothetical protein	NA	NA	NA	NA
WP_015341844.1\|68761_69790_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015341845.1\|69793_70594_-	DUF1295 domain-containing protein	NA	NA	NA	NA
WP_015341846.1\|70762_72136_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015341847.1\|72132_72966_+	DUF1365 family protein	NA	NA	NA	NA
WP_015341848.1\|72952_74185_+	class I SAM-dependent methyltransferase	A0A2K9L0U7	Tupanvirus	5.2e-33	30.1
WP_015341849.1\|74213_74585_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_041678058.1\|74617_75037_+	DUF2177 family protein	NA	NA	NA	NA
WP_015341851.1\|75075_75573_-	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_015341852.1\|75711_76365_+	sigma-70 family RNA polymerase sigma factor	A0A076YQ50	Rhizobium_phage	7.1e-05	24.1
WP_015341853.1\|76361_77012_+	cupin domain-containing protein	NA	NA	NA	NA
WP_015341854.1\|77367_78474_+	PAS domain-containing protein	NA	NA	NA	NA
WP_041678042.1\|78488_78911_+	response regulator	NA	NA	NA	NA
WP_015341856.1\|79112_82271_-	efflux RND transporter permease subunit	NA	NA	NA	NA
80129:80146	attL	NA	NA	NA	NA
WP_135488263.1\|82267_83386_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_041678063.1\|84313_85000_-	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	5.3e-27	36.4
WP_081598412.1\|85011_86634_-	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	3.2e-54	28.4
WP_015341861.1\|86572_87175_-	GTP cyclohydrolase I FolE	A0A2I7S8W4	Vibrio_phage	1.9e-41	45.6
WP_041678065.1\|87602_87839_+	hypothetical protein	NA	NA	NA	NA
WP_148289262.1\|87918_88791_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.1e-16	33.3
WP_135488259.1\|89947_90610_+	hypothetical protein	NA	NA	NA	NA
WP_161624410.1\|91542_92067_-\|transposase	transposase	NA	NA	NA	NA
WP_015341865.1\|92396_92651_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_015341866.1\|92650_93076_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_051043295.1\|93576_94854_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_015341868.1\|94904_95561_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-21	30.0
WP_015341869.1\|95695_96268_+	hypothetical protein	NA	NA	NA	NA
WP_015341870.1\|96272_96935_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-21	32.1
WP_135488298.1\|96927_97668_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-24	32.1
WP_015341872.1\|100333_100585_+	DUF1344 domain-containing protein	NA	NA	NA	NA
WP_015341873.1\|100826_101216_+	hypothetical protein	NA	NA	NA	NA
WP_015341874.1\|101290_102130_+	hypothetical protein	NA	NA	NA	NA
WP_135488295.1\|102265_103189_+	glycosyltransferase family 25 protein	A0A1S5NQ44	Burkholderia_phage	2.8e-07	23.8
WP_015341877.1\|104723_105407_-	response regulator transcription factor	NA	NA	NA	NA
WP_081598414.1\|105840_106557_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	4.2e-27	37.0
WP_015341879.1\|106841_107834_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	4.1e-12	26.5
WP_015341880.1\|107830_108769_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015341881.1\|108765_109986_-\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	2.5e-11	29.1
112829:112846	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_020062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

848051 : 857513

Corynebacterium_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004110519.1\|848051_849248_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-90	46.3
WP_041678181.1\|849302_849605_+	hypothetical protein	NA	NA	NA	NA
WP_015342817.1\|850191_850413_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.6e-17	58.9
WP_015342818.1\|850424_850820_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A249Y1D6	Staphylococcus_phage	1.1e-05	31.0
WP_015342819.1\|850807_853018_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.6e-212	51.3
WP_015342820.1\|853038_854013_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	2.3e-137	74.9
WP_015342821.1\|854169_854448_-	HU family DNA-binding protein	B5TA87	Burkholderia_phage	6.9e-10	43.7
WP_015342823.1\|854803_855025_+	hypothetical protein	NA	NA	NA	NA
WP_015342824.1\|855186_856185_+	Tim44 domain-containing protein	NA	NA	NA	NA
WP_015342825.1\|856502_857513_+	zinc-dependent alcohol dehydrogenase family protein	E3SJ82	Synechococcus_phage	1.4e-15	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_020059

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1599870 : 1676721

uncultured_Mediterranean_phage(28.57%)

portal,integrase,capsid,protease,head,tRNA,terminase,tail

attL 1629093:1629108|attR 1661108:1661123

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015339676.1\|1599870_1602714_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	7.1e-142	37.8
WP_015339677.1\|1603216_1604476_+	transporter	NA	NA	NA	NA
WP_135488179.1\|1604834_1605164_+	hypothetical protein	NA	NA	NA	NA
WP_041677378.1\|1605156_1605960_+	sel1 repeat family protein	NA	NA	NA	NA
WP_015339679.1\|1606023_1606815_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_015339680.1\|1606944_1607277_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.2e-16	41.0
WP_015339681.1\|1607585_1608803_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_041677862.1\|1608858_1610619_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_015339683.1\|1610680_1613428_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_041677863.1\|1613552_1614566_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_051043255.1\|1614640_1615438_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.1e-34	36.9
WP_085999196.1\|1615480_1616167_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.9e-39	45.9
WP_015339687.1\|1616414_1616621_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.3e-08	55.6
WP_015339688.1\|1616675_1617395_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_015339689.1\|1617391_1618219_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	5.6e-47	43.6
WP_015339690.1\|1618318_1619602_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.5e-96	46.0
WP_015339691.1\|1619617_1620382_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-23	30.6
WP_041677382.1\|1620386_1621040_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-15	34.8
WP_041677384.1\|1621210_1622896_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	3.3e-14	34.2
WP_041677864.1\|1622978_1623851_-	ATP-binding protein	NA	NA	NA	NA
WP_015339695.1\|1624058_1624406_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_015339696.1\|1624565_1627109_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.3e-57	47.8
WP_015339697.1\|1627113_1627500_+	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_015339698.1\|1627515_1628376_+	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_015339699.1\|1628452_1628914_+	hypothetical protein	NA	NA	NA	NA
WP_015339700.1\|1629038_1630475_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
1629093:1629108	attL	NA	NA	NA	NA
WP_015339701.1\|1630587_1630731_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_015339702.1\|1631036_1631183_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_015339705.1\|1632030_1633170_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_015339706.1\|1633166_1633781_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_015339707.1\|1634290_1635778_+	trigger factor	NA	NA	NA	NA
WP_015339708.1\|1636016_1636688_+	HAD family hydrolase	NA	NA	NA	NA
WP_015339709.1\|1636730_1638134_-	Si-specific NAD(P)(+) transhydrogenase	A0A2K5B2C5	Erysipelothrix_phage	5.4e-34	24.9
WP_041677865.1\|1638243_1638840_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_015339711.1\|1639102_1639960_-	DNA repair protein RadC	NA	NA	NA	NA
WP_015339712.1\|1639963_1640800_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_015339713.1\|1640802_1641549_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_015339714.1\|1641563_1643405_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_015339715.1\|1643565_1644018_+	hypothetical protein	NA	NA	NA	NA
WP_015339716.1\|1644241_1645462_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA
WP_015339717.1\|1645519_1646839_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_015339718.1\|1646896_1648699_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.1e-54	29.2
WP_015339719.1\|1649382_1650174_-	hypothetical protein	NA	NA	NA	NA
WP_015339720.1\|1650378_1650819_-	VOC family protein	NA	NA	NA	NA
WP_015339721.1\|1651016_1651595_+	CspA family cold shock protein	A0A1X9IGI9	Lactococcus_phage	1.5e-06	36.9
WP_041677866.1\|1651763_1652924_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A077KET4	Ralstonia_phage	7.5e-66	40.2
WP_135488181.1\|1652959_1653475_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015339724.1\|1653591_1653801_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_015339725.1\|1653881_1654979_+	AAA family ATPase	NA	NA	NA	NA
WP_015339726.1\|1655151_1655361_+	hypothetical protein	NA	NA	NA	NA
WP_015339727.1\|1655357_1656494_+	hypothetical protein	NA	NA	NA	NA
WP_015339728.1\|1657387_1657786_+	hypothetical protein	NA	NA	NA	NA
WP_015339729.1\|1657742_1659716_+\|terminase	putative phage terminase, large subunit	A0A0U2C138	Paracoccus_phage	1.3e-145	48.3
WP_015339730.1\|1659734_1661054_+\|portal	phage portal protein	A0A0F7L418	uncultured_marine_virus	7.2e-105	52.6
WP_015339731.1\|1661050_1661674_+\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	1.9e-47	60.1
1661108:1661123	attR	NA	NA	NA	NA
WP_015339732.1\|1661752_1663003_+\|capsid	phage major capsid protein	A0A0F7L2V9	uncultured_marine_virus	9.8e-104	48.7
WP_015339733.1\|1663230_1663893_+\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	2.2e-06	54.5
WP_041677391.1\|1663908_1664118_+	hypothetical protein	NA	NA	NA	NA
WP_015339734.1\|1664121_1664526_+	hypothetical protein	B4UTP8	Rhizobium_phage	5.3e-27	55.8
WP_015339735.1\|1664707_1665067_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_015339736.1\|1665066_1665558_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_015339737.1\|1665557_1665977_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_015339738.1\|1666020_1666452_+\|tail	phage major tail protein	I3UM07	Rhodobacter_phage	2.0e-19	38.3
WP_015339739.1\|1666475_1666856_+	hypothetical protein	NA	NA	NA	NA
WP_081598374.1\|1666882_1667056_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_015339740.1\|1667223_1670529_+	tape measure protein	A0A076G7H2	Sinorhizobium_phage	9.7e-42	38.4
WP_015339741.1\|1670532_1671285_+	hypothetical protein	A0A076GD29	Sinorhizobium_phage	6.0e-64	51.4
WP_015339742.1\|1671351_1671951_+	hypothetical protein	A0A076G707	Sinorhizobium_phage	7.0e-76	67.3
WP_041677394.1\|1671958_1672366_+	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	7.5e-37	53.8
WP_041677395.1\|1672362_1674549_+	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	4.0e-209	53.7
WP_015339745.1\|1674585_1676721_+	right-handed parallel beta-helix repeat-containing protein	B4UTR2	Rhizobium_phage	6.4e-71	56.3

DBSCAN-SWA_2

1808436 : 1823120

uncultured_Mediterranean_phage(62.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015339880.1\|1808436_1811358_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.1
WP_041677885.1\|1811631_1812183_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	4.1e-46	75.4
WP_085999169.1\|1812282_1813043_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041677423.1\|1813083_1813335_-	hypothetical protein	NA	NA	NA	NA
WP_041677886.1\|1813406_1814039_-	MarC family protein	NA	NA	NA	NA
WP_015339883.1\|1814263_1817059_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.0e-97	33.4
WP_015339884.1\|1817209_1818100_-	NAD(P)-dependent oxidoreductase	A0A2C9DSV6	Western_grey_kangaroopox_virus	1.4e-06	35.7
WP_015339886.1\|1818482_1818641_-	hypothetical protein	NA	NA	NA	NA
WP_135488286.1\|1818732_1818957_-	hypothetical protein	NA	NA	NA	NA
WP_015339888.1\|1819159_1819672_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.8e-24	36.5
WP_015339889.1\|1819701_1820274_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.3e-46	56.4
WP_015339890.1\|1820308_1820809_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	5.9e-44	60.4
WP_015339891.1\|1820897_1821983_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_015339892.1\|1821989_1823120_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.1e-101	52.9

DBSCAN-SWA_3

2391202 : 2470407

Sinorhizobium_phage(20.93%)

transposase,portal,tail,integrase,capsid,protease,plate,head,terminase,holin

attL 2425418:2425433|attR 2472396:2472411

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015340442.1\|2391202_2391688_-	hypothetical protein	W6EKF5	Rhizobium_phage	1.6e-30	46.4
WP_015340443.1\|2391691_2392123_-	hypothetical protein	NA	NA	NA	NA
WP_135488283.1\|2392160_2392553_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_015340445.1\|2392572_2392800_-	hypothetical protein	NA	NA	NA	NA
WP_015340446.1\|2392796_2393153_-	hypothetical protein	NA	NA	NA	NA
WP_015340447.1\|2393152_2393650_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.9e-13	35.6
WP_015340448.1\|2393720_2394692_-	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	1.3e-132	71.6
WP_015340449.1\|2394695_2395166_-	DUF2190 family protein	A0A2H4J1G1	uncultured_Caudovirales_phage	1.6e-35	57.1
WP_015340450.1\|2395192_2396308_-	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	6.5e-75	43.4
WP_015340451.1\|2396408_2397749_-	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	1.4e-119	51.7
WP_041677922.1\|2397796_2399155_-\|terminase	phage terminase large subunit	H9C0U8	Aeromonas_phage	9.3e-92	44.2
WP_015340453.1\|2399237_2399585_-	hypothetical protein	NA	NA	NA	NA
WP_015340454.1\|2399856_2400555_+	methyltransferase	NA	NA	NA	NA
WP_015340455.1\|2400625_2401291_-	hypothetical protein	NA	NA	NA	NA
WP_015340456.1\|2401265_2401682_-	hypothetical protein	NA	NA	NA	NA
WP_015340457.1\|2401725_2402010_-	hypothetical protein	NA	NA	NA	NA
WP_015340458.1\|2402085_2402310_-	hypothetical protein	NA	NA	NA	NA
WP_015340459.1\|2402671_2403460_+	LexA family transcriptional regulator	A0A291AUK0	Sinorhizobium_phage	1.3e-74	74.6
WP_135488282.1\|2403763_2404153_+	hypothetical protein	NA	NA	NA	NA
WP_015340461.1\|2404200_2404596_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_015340462.1\|2404666_2405317_-	response regulator transcription factor	NA	NA	NA	NA
WP_015340463.1\|2405320_2406385_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_015340464.1\|2406613_2407945_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-34	40.8
WP_015340465.1\|2407966_2409727_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_041677566.1\|2409818_2410049_-	hypothetical protein	NA	NA	NA	NA
WP_135488281.1\|2410763_2411069_-	hypothetical protein	NA	NA	NA	NA
WP_135488280.1\|2411501_2412674_+	hypothetical protein	NA	NA	NA	NA
WP_015340467.1\|2412828_2413323_+	RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	1.1e-10	31.3
WP_161624408.1\|2413333_2413705_-	response regulator	NA	NA	NA	NA
WP_015340469.1\|2414002_2414719_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_041677924.1\|2414747_2415170_-	HD domain-containing protein	NA	NA	NA	NA
WP_015340471.1\|2415251_2415449_-	hypothetical protein	NA	NA	NA	NA
WP_015340472.1\|2415459_2415642_-	hypothetical protein	NA	NA	NA	NA
WP_015340473.1\|2415654_2415897_-	hypothetical protein	NA	NA	NA	NA
WP_041677568.1\|2415946_2416804_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	6.8e-64	48.4
WP_015340475.1\|2416869_2417955_-	DNA topoisomerase IB	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.4e-42	34.0
WP_015340476.1\|2418150_2419935_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA
WP_015340478.1\|2420417_2420639_-	hypothetical protein	NA	NA	NA	NA
WP_015340479.1\|2420788_2421112_-	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_015340480.1\|2421257_2422931_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA
WP_154660797.1\|2422917_2423346_-	hypothetical protein	NA	NA	NA	NA
WP_015340482.1\|2423465_2423720_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_015340483.1\|2423930_2424164_+	hypothetical protein	NA	NA	NA	NA
WP_015340484.1\|2424293_2424794_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_085999178.1\|2424937_2425111_-	hypothetical protein	NA	NA	NA	NA
2425418:2425433	attL	NA	NA	NA	NA
WP_015340487.1\|2425747_2426164_+	hypothetical protein	NA	NA	NA	NA
WP_015340488.1\|2426435_2427233_-	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_015340489.1\|2427336_2428338_-	hypothetical protein	A0A2I6PCS6	Staphylococcus_phage	5.2e-23	39.6
WP_015340490.1\|2428535_2429264_+	hypothetical protein	NA	NA	NA	NA
WP_015340491.1\|2429275_2430004_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	1.7e-23	32.6
WP_015340492.1\|2430000_2430207_+	hypothetical protein	NA	NA	NA	NA
WP_015340493.1\|2430196_2430472_+	hypothetical protein	NA	NA	NA	NA
WP_085999177.1\|2430636_2431783_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.4e-66	47.5
WP_015340494.1\|2432004_2432328_-\|holin	phage holin family protein	A0A291AUN9	Sinorhizobium_phage	2.7e-37	65.7
WP_015340495.1\|2432340_2432592_-	hypothetical protein	NA	NA	NA	NA
WP_015340496.1\|2432653_2433286_-	hypothetical protein	A0A0F6WBX9	Sinorhizobium_phage	4.1e-66	61.3
WP_015340497.1\|2433381_2433624_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_135488209.1\|2433645_2434119_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_015340499.1\|2434638_2435088_+	hypothetical protein	NA	NA	NA	NA
WP_041677577.1\|2435274_2436429_-	phage late control D family protein	V5YTN9	Pseudomonas_phage	2.4e-32	30.6
WP_041677579.1\|2436431_2436644_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	6.6e-13	50.8
WP_015340501.1\|2436648_2437113_-\|tail	phage tail protein	NA	NA	NA	NA
WP_148289259.1\|2437432_2438188_-	hypothetical protein	NA	NA	NA	NA
WP_015340503.1\|2438190_2440359_-\|tail	phage tail tape measure protein	A0A088FV68	Escherichia_phage	1.4e-57	39.1
WP_015340504.1\|2440483_2440756_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_015340505.1\|2440835_2441348_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.3e-17	33.3
WP_015340506.1\|2441363_2442830_-\|tail	phage tail sheath subtilisin-like domain-containing protein	V5YTI0	Pseudomonas_phage	4.3e-50	40.6
WP_135488201.1\|2442979_2443609_-	hypothetical protein	A0A1Y0SVH3	Sinorhizobium_phage	1.2e-09	39.8
WP_081598401.1\|2443584_2444397_-	hypothetical protein	A0A286N2T9	Arthrobacter_phage	1.1e-10	36.6
WP_015340509.1\|2446368_2446554_-	hypothetical protein	NA	NA	NA	NA
WP_015340510.1\|2446571_2448863_-	hypothetical protein	A0A1X9SGY8	Bradyrhizobium_phage	2.0e-110	34.3
WP_015340511.1\|2448865_2450080_-\|tail	phage tail protein I	A0A1X9SH73	Bradyrhizobium_phage	4.2e-43	29.0
WP_015340512.1\|2450076_2450967_-\|plate	baseplate J/gp47 family protein	E5FFH3	Burkholderia_phage	3.9e-30	33.8
WP_015340513.1\|2450969_2451347_-	GPW/gp25 family protein	A0A193GYY8	Enterobacter_phage	7.9e-17	45.1
WP_041677582.1\|2451793_2452252_-	hypothetical protein	NA	NA	NA	NA
WP_015340514.1\|2452352_2452904_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_015340515.1\|2452900_2453653_-	hypothetical protein	A0A0A8IKZ7	Aurantimonas_phage	1.2e-40	44.6
WP_135488202.1\|2453671_2454061_-	hypothetical protein	NA	NA	NA	NA
WP_015340518.1\|2454113_2455169_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	6.0e-38	32.9
WP_015340519.1\|2455255_2455690_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.1e-05	33.3
WP_015340520.1\|2455746_2456790_-\|protease	Clp protease ClpP	A0A0A8IKZ4	Aurantimonas_phage	4.5e-94	62.4
WP_015340521.1\|2456800_2457058_-	hypothetical protein	NA	NA	NA	NA
WP_041677930.1\|2457057_2458659_-\|portal	phage portal protein	A0A0A8IK73	Aurantimonas_phage	7.4e-104	42.5
WP_135488211.1\|2458709_2460752_-\|terminase	phage terminase large subunit family protein	G8DH41	Emiliania_huxleyi_virus	1.1e-96	33.1
WP_015340524.1\|2460817_2461444_-	hypothetical protein	NA	NA	NA	NA
WP_041677586.1\|2461614_2462184_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	1.2e-24	35.4
WP_135488204.1\|2462411_2463089_-	antitermination protein	A0A291AUS6	Sinorhizobium_phage	5.6e-21	35.0
WP_015340527.1\|2463078_2464293_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	4.3e-72	47.8
WP_015340528.1\|2464289_2464583_-	hypothetical protein	A0A068C9G0	Rhizobium_phage	1.4e-16	48.9
WP_015340529.1\|2464579_2465128_-	hypothetical protein	A0A291AUS3	Sinorhizobium_phage	1.6e-26	40.1
WP_015340530.1\|2465124_2466522_-	SAM-dependent methyltransferase	A0A068C9F4	Rhizobium_phage	1.5e-132	63.2
WP_015340531.1\|2466521_2466770_-	hypothetical protein	NA	NA	NA	NA
WP_015340532.1\|2466766_2467264_-	hypothetical protein	R9TQJ7	Rhizobium_phage	6.5e-43	58.2
WP_015340534.1\|2467825_2468128_+	hypothetical protein	NA	NA	NA	NA
WP_015340535.1\|2468639_2468834_+	hypothetical protein	NA	NA	NA	NA
WP_154660798.1\|2468901_2469039_+	hypothetical protein	NA	NA	NA	NA
WP_015340536.1\|2469055_2469310_+	hypothetical protein	A0A291AUJ1	Sinorhizobium_phage	3.0e-12	54.8
WP_015340537.1\|2469318_2470407_+\|integrase	tyrosine-type recombinase/integrase	B0VK72	Azospirillum_phage	1.8e-21	32.3
2472396:2472411	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2909307 : 2920365

Paenibacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015340960.1\|2909307_2910075_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-21	42.3
WP_085999180.1\|2911880_2912982_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.2e-44	39.4
WP_015340848.1\|2913329_2914355_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041677645.1\|2914662_2916054_+	hypothetical protein	NA	NA	NA	NA
WP_085999181.1\|2916516_2917643_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.7e-91	62.7
WP_015340964.1\|2917899_2918847_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	3.5e-13	26.9
WP_015339923.1\|2919177_2920365_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3731554 : 3738923

Acanthocystis_turfacea_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015341695.1\|3731554_3732637_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	1.6e-139	69.6
WP_015341696.1\|3733693_3734812_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015341697.1\|3734996_3735365_+	phosphomannose isomerase type II C-terminal cupin domain	M1HHK7	Acanthocystis_turfacea_Chlorella_virus	1.0e-16	40.9
WP_015341698.1\|3735378_3735927_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.4e-51	58.7
WP_015341699.1\|3735983_3736871_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.0e-99	61.1
WP_015341700.1\|3736956_3737859_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.1e-27	34.8
WP_015341701.1\|3737855_3738923_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.4e-87	48.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020061

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_020060

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_020062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_020059

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection