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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_020134 Thermoclostridium stercorarium subsp. stercorarium DSM 8532, complete sequence 10 crisprs cas10,csm3gr7,csx10gr5,csm2gr11,csx1,csa3,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6 1 9 4 0

Results visualization

1. NC_020134
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_1 205546-206960 Orphan NA
21 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_3 786119-786278 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_2 784774-785975 Orphan NA
18 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_4 789140-789623 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_5 1503317-1503610 Orphan I-A
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_6 1784944-1789135 Unclear NA
63 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_7 2074528-2074855 Unclear NA
4 spacers
cas5,cas7,cas8b2,cas6,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_8 2319491-2319782 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_9 2320107-2320334 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020134_10 2321817-2322768 Orphan NA
14 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_020134_7 7.1|2074558|36|NC_020134|CRISPRCasFinder,CRT 2074558-2074593 36 NC_020134.1 913348-913383 0 1.0

1. spacer 7.1|2074558|36|NC_020134|CRISPRCasFinder,CRT matches to position: 913348-913383, mismatch: 0, identity: 1.0

gctgttcagcaatcccttcgcatcatacggtgttgc	CRISPR spacer
gctgttcagcaatcccttcgcatcatacggtgttgc	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_020134_6 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1787159-1787194 36 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 765426-765461 7 0.806
NC_020134_6 6.57|1788675|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788675-1788709 35 NZ_CP020750 Bacillus mycoides strain Gnyt1 plasmid unnamed7, complete sequence 980-1014 7 0.8
NC_020134_6 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1787159-1787194 36 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 465179-465214 8 0.778
NC_020134_6 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788082-1788117 36 NZ_LR214986 Mycoplasma cynos strain NCTC10142 plasmid 13 567511-567546 8 0.778
NC_020134_6 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788082-1788117 36 NZ_CP011350 Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence 139380-139415 8 0.778
NC_020134_6 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788082-1788117 36 NZ_CP007616 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence 241945-241980 8 0.778
NC_020134_6 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788082-1788117 36 NZ_CP004877 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence 116681-116716 8 0.778
NC_020134_6 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788082-1788117 36 NZ_CP004860 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence 136474-136509 8 0.778
NC_020134_10 10.10|2322439|35|NC_020134|PILER-CR,CRISPRCasFinder,CRT 2322439-2322473 35 MF417937 Uncultured Caudovirales phage clone 10F_6, partial genome 8642-8676 8 0.771
NC_020134_6 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1787159-1787194 36 NZ_CP018759 Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence 55828-55863 9 0.75
NC_020134_6 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788082-1788117 36 KC413988 Streptococcus phage phiST1, complete genome 13817-13852 9 0.75
NC_020134_6 6.50|1788213|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788213-1788247 35 NZ_CP019242 Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed2 10617-10651 9 0.743
NC_020134_6 6.50|1788213|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1788213-1788247 35 NZ_CP019242 Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed2 101524-101558 9 0.743
NC_020134_6 6.24|1786499|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1786499-1786533 35 MN693023 Marine virus AFVG_117M30, complete genome 23921-23955 10 0.714
NC_020134_6 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1787159-1787194 36 JN564907 Burkholderia phage AH2, complete genome 20429-20464 10 0.722
NC_020134_2 2.17|785846|35|NC_020134|PILER-CR,CRISPRCasFinder,CRT 785846-785880 35 NZ_CP035514 Haematobacter massiliensis strain OT1 plasmid pOT1-4, complete sequence 51311-51345 11 0.686
NC_020134_6 6.16|1785973|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1785973-1786007 35 MN694216 Marine virus AFVG_250M1122, complete genome 35146-35180 11 0.686
NC_020134_6 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1787159-1787194 36 NZ_CP024582 Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence 30833-30868 11 0.694
NC_020134_6 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR 1787159-1787194 36 NZ_CP025188 Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence 397427-397462 11 0.694
NC_020134_6 6.4|1785168|35|NC_020134|CRT,PILER-CR,CRISPRCasFinder 1785168-1785202 35 NZ_CP015253 Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence 31353-31387 12 0.657

1. spacer 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.806

gctacttcgaggcgcaggcggaggccgagcgccagg	CRISPR spacer
gcatgcgcaaggcgcaggaggaggccgagcgccagg	Protospacer
**   . *.********* *****************

2. spacer 6.57|1788675|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP020750 (Bacillus mycoides strain Gnyt1 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.8

tgtttccggtgtcatgtatgcgccgtgttttctga	CRISPR spacer
tgtacttggtgtcatgtacgctccgtgttttctaa	Protospacer
*** ...***********.** ***********.*

3. spacer 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 8, identity: 0.778

gctacttcgaggcgcaggcggaggccgagcgccagg	CRISPR spacer
gcatgcgcaaggcgcaggaggacgccgagcgccagg	Protospacer
**   . *.********* *** *************

4. spacer 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.778

gcttcaactttttcttgttttttctttgcaactttt	CRISPR spacer
ctagcactttgttcttgttttgtctttgcaactttt	Protospacer
 .  ** .** ********** **************

5. spacer 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 8, identity: 0.778

gcttcaactttttcttgttttttctttgcaactttt	CRISPR spacer
tctttctcttttttttgttttttctttgaaactaat	Protospacer
 ***.  ******.************** ****  *

6. spacer 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 8, identity: 0.778

gcttcaactttttcttgttttttctttgcaactttt	CRISPR spacer
tctttctcttttttttgttttttctttgaaactaat	Protospacer
 ***.  ******.************** ****  *

7. spacer 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 8, identity: 0.778

gcttcaactttttcttgttttttctttgcaactttt	CRISPR spacer
tctttctcttttttttgttttttctttgaaactaat	Protospacer
 ***.  ******.************** ****  *

8. spacer 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 8, identity: 0.778

gcttcaactttttcttgttttttctttgcaactttt	CRISPR spacer
tctttctcttttttttgttttttctttgaaactaat	Protospacer
 ***.  ******.************** ****  *

9. spacer 10.10|2322439|35|NC_020134|PILER-CR,CRISPRCasFinder,CRT matches to MF417937 (Uncultured Caudovirales phage clone 10F_6, partial genome) position: , mismatch: 8, identity: 0.771

gcagtagcactcatataatcacctcacaaataaaa	CRISPR spacer
aaatttggaatcatataatcacctcacgaatataa	Protospacer
. * * * * *****************.**** **

10. spacer 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018759 (Pseudomonas psychrotolerans strain PRS08-11306 plasmid pPRS08-11306, complete sequence) position: , mismatch: 9, identity: 0.75

gctacttcgaggcgcaggcggaggccgagcgccagg	CRISPR spacer
agatcctgcaggcgcaggccgaggtcgagcgccagg	Protospacer
.   *.*  ********** ****.***********

11. spacer 6.48|1788082|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to KC413988 (Streptococcus phage phiST1, complete genome) position: , mismatch: 9, identity: 0.75

gcttcaactttttcttgttttttctttgcaactttt	CRISPR spacer
gtttcatcgttttcttgttttttctttgtttccata	Protospacer
*.**** * *******************.  *. * 

12. spacer 6.50|1788213|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019242 (Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed2) position: , mismatch: 9, identity: 0.743

cacccaaacacacatccgaggtcaaatttttgaaa	CRISPR spacer
tgaccaaacacacatctgagatcaaattgaaaaaa	Protospacer
.. *************.***.*******   .***

13. spacer 6.50|1788213|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019242 (Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed2) position: , mismatch: 9, identity: 0.743

cacccaaacacacatccgaggtcaaatttttgaaa	CRISPR spacer
tgaccaaacacacatctgagatcaaattgaaaaaa	Protospacer
.. *************.***.*******   .***

14. spacer 6.24|1786499|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to MN693023 (Marine virus AFVG_117M30, complete genome) position: , mismatch: 10, identity: 0.714

gactgatgcaggtaatatccctatggatttaccat	CRISPR spacer
agaagcaccgggtaatacccctatggttttaccat	Protospacer
..  *   *.*******.******** ********

15. spacer 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to JN564907 (Burkholderia phage AH2, complete genome) position: , mismatch: 10, identity: 0.722

gctacttcgaggcgcaggcggaggccgagcgccagg	CRISPR spacer
atctcgtgaaggcgcaggccgaggccgagcgtcagc	Protospacer
... * * .********** ***********.*** 

16. spacer 2.17|785846|35|NC_020134|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035514 (Haematobacter massiliensis strain OT1 plasmid pOT1-4, complete sequence) position: , mismatch: 11, identity: 0.686

atgatcgttgtggaaaacgaatacttcgtttccac	CRISPR spacer
gattccgttttggaaaacgaatactacgttaatag	Protospacer
.   .**** *************** ****  .* 

17. spacer 6.16|1785973|35|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to MN694216 (Marine virus AFVG_250M1122, complete genome) position: , mismatch: 11, identity: 0.686

aggaattgaggttgaagaaaagaaaaaaagaagga	CRISPR spacer
gaaagaagaggatgaagagaagaaaaaaagaaatc	Protospacer
...*.  **** ******.*************.  

18. spacer 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

gctacttcgaggcgcaggcggaggccgagcgccagg	CRISPR spacer
ccataggcgaggcgcaggcgcaggcagagcgccgcc	Protospacer
 *     ************* **** *******.  

19. spacer 6.34|1787159|36|NC_020134|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 11, identity: 0.694

gctacttcgaggcgcaggcggaggccgagcgccagg	CRISPR spacer
ccataggcgaggcgcaggcgcaggcagagcgccgcc	Protospacer
 *     ************* **** *******.  

20. spacer 6.4|1785168|35|NC_020134|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015253 (Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence) position: , mismatch: 12, identity: 0.657

ccggcgatgaagaggaaaaaataaagaatgataat	CRISPR spacer
aataaaatgaaaaggagaaaataaagaatgaattc	Protospacer
   . .*****.****.**************   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 420777 : 477705 67 Thermus_phage(22.86%) tail,capsid,transposase,plate,terminase,portal,integrase attL 420770:420829|attR 432350:433646
DBSCAN-SWA_2 962223 : 971225 6 Bacillus_phage(83.33%) NA NA
DBSCAN-SWA_3 1270640 : 1282056 9 Bacillus_phage(42.86%) NA NA
DBSCAN-SWA_4 1919304 : 1982284 45 uncultured_Caudovirales_phage(20.0%) integrase,transposase attL 1934226:1934285|attR 1982239:1984119
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage