CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020156	Nonlabens dokdonensis DSW-6, complete sequence	6 crisprs	csa3,DEDDh,cas3,PD-DExK,WYL	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020156_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020156_1

1027685-1027831

Orphan

Consensus_repeat	Method
CAACCTTCCCTCAAGGGAAGGAGTTTTGATTGTCATTCTGCTACAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020156_1

>merge|NC_020156|1|1027685-1027831|CRISPRCasFinder
CAACCTTCCCTCAAGGGAAGGAGTTTTGATTGTCATTCTGCTACAGAGCGGAATCGGTTATTGCCTTTCTCCTTCTTTCGTAGACTGCAACACCCAACCCAACCTTCCCTCAAGGGAAGGAGTTTTGATTGTCATTCCGCTACAGAG

>NC_020156|1|1|1027685-1027831|CRISPRCasFinder
CAACCTTCCCTCAAGGGAAGGAGTTTTGATTGTCATTCTGCTACAGAG	CGGAATCGGTTATTGCCTTTCTCCTTCTTTCGTAGACTGCAACACCCAACC
CAACCTTCCCTCAAGGGAAGGAGTTTTGATTGTCATTCCGCTACAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020156.1\|WP_015361600.1\|1035528_1035864_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|200420
NC_020156.1\|WP_041566931.1\|1029635_1032845_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NC_020156.1\|WP_015361598.1\|1033586_1034651_-\|arsenosugar-biosynthesis-radical-SAM-protein-ArsS	unknown	unknown	gnl\|CDD\|275025
NC_020156.1\|WP_015361591.1\|1023944_1024973_-\|DUF2183-domain-containing-protein	unknown	unknown	gnl\|CDD\|227187
NC_020156.1\|WP_015361601.1\|1036011_1037439_-\|alpha-glucosidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|200452
NC_020156.1\|WP_015361595.1\|1028009_1029461_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|378943
NC_020156.1\|WP_015361602.1\|1037498_1039859_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200478
NC_020156.1\|WP_015361589.1\|1020213_1022178_+\|putative-peptidase-M56-BlaR1	unknown	unknown	gnl\|CDD\|320700
NC_020156.1\|WP_015361599.1\|1035011_1035338_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361593.1\|1025288_1026122_-\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NC_020156.1\|WP_015361584.1\|1012813_1014733_-\|DUF4365-domain-containing-protein	unknown	unknown	gnl\|CDD\|379535
NC_020156.1\|WP_041566930.1\|1026103_1027453_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271357
NC_020156.1\|WP_015361597.1\|1032896_1033583_-\|DUF2064-domain-containing-protein	unknown	unknown	gnl\|CDD\|275102
NC_020156.1\|WP_015361585.1\|1015177_1016563_+\|dipeptidase	unknown	unknown	gnl\|CDD\|349929
NC_020156.1\|WP_015361587.1\|1018452_1019700_+\|DoxX-family-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361590.1\|1022429_1023530_+\|DUF4407-domain-containing-protein	unknown	unknown	gnl\|CDD\|379583
NC_020156.1\|WP_015361588.1\|1019845_1020211_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_020156.1\|WP_015361604.1\|1042215_1044396_-\|glycoside-hydrolase-family-97-protein	unknown	unknown	gnl\|CDD\|371140
NC_020156.1\|WP_015361603.1\|1040193_1042173_-\|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl\|CDD\|200479
NC_020156.1\|WP_015361586.1\|1016721_1018173_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020156.1\|WP_015361600.1\|1035528_1035864_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|200420	TIGR04169, perox_w_seleSAM, alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein. Members of this family are usually annotated as putative carboxymuconolactone decarboxylases, are related also to alkylhydroperoxidase AhpD, and contain a peroxidase-like Cys-X-X-Cys putative redox-active disulfide. All members occur in genomes with a radical SAM protein of family TIGR04167, which occasionally are selenoproteins.	4.56269e-65
NC_020156.1\|WP_041566931.1\|1029635_1032845_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_020156.1\|WP_015361598.1\|1033586_1034651_-\|arsenosugar-biosynthesis-radical-SAM-protein-ArsS	gnl\|CDD\|275025	TIGR04167, radical_SAM_domain_protein, radical SAM/Cys-rich domain protein. Members of this protein family have an N-terminal radical SAM domain (pfam04055) and a C-terminal pfam12345 domain. The C-terminal region has several conserved Cys residues, one of which is replaced by selenocysteine in at least five bacterial reference genomes.	0
NC_020156.1\|WP_015361591.1\|1023944_1024973_-\|DUF2183-domain-containing-protein	gnl\|CDD\|227187	COG4850, COG4850, Uncharacterized conserved protein [Function unknown].	1.38775e-55
NC_020156.1\|WP_015361601.1\|1036011_1037439_-\|alpha-glucosidase-C-terminal-domain-containing-protein	gnl\|CDD\|200452	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	4.33671e-171
NC_020156.1\|WP_015361595.1\|1028009_1029461_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|378943	pfam12771, SusD-like_2, Starch-binding associating with outer membrane. SusD is a secreted starch-binding protein with an N-terminal lipid tail that allows it to associate with the outer membrane.	2.73217e-88
NC_020156.1\|WP_015361604.1\|1042215_1044396_-\|glycoside-hydrolase-family-97-protein	gnl\|CDD\|371140	pfam10566, Glyco_hydro_97, Glycoside hydrolase 97. This domain is the catalytic region of the bacterial glycosyl-hydrolase family 97. This central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, form two additional non-catalytic domains. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.	2.98608e-141
NC_020156.1\|WP_015361603.1\|1040193_1042173_-\|glycoside-hydrolase-family-13-protein	gnl\|CDD\|200479	cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_020156.1\|WP_015361593.1\|1025288_1026122_-\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	2.11753e-05
NC_020156.1\|WP_015361584.1\|1012813_1014733_-\|DUF4365-domain-containing-protein	gnl\|CDD\|379535	pfam14280, DUF4365, Domain of unknown function (DUF4365). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 182 and 530 amino acids in length. There is a single completely conserved residue D that may be functionally important.	8.0385e-27
NC_020156.1\|WP_041566930.1\|1026103_1027453_-\|sodium:solute-symporter	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	1.13032e-14
NC_020156.1\|WP_015361597.1\|1032896_1033583_-\|DUF2064-domain-containing-protein	gnl\|CDD\|275102	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated. Members of this protein family show strongly correlated phylogenetic distribution, and in most cases co-clustering, with an unusual radical SAM enzyme (TIGR04167) whose C-terminal pfam12345 domain often contains a selenocysteine residue. Other members of the conserved gene neighborhood include another putative glycosyltransferase, an alkylhydroperoxidase family protein (TIGR04169), and a phosphoesterase family protein (TIGR04168). The cassette is likely to be biosynthetic but its exact function is unknown. [Unknown function, Enzymes of unknown specificity].	1.04414e-22
NC_020156.1\|WP_015361585.1\|1015177_1016563_+\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NC_020156.1\|WP_015361602.1\|1037498_1039859_-\|hypothetical-protein	gnl\|CDD\|200478	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	7.34079e-66
NC_020156.1\|WP_015361590.1\|1022429_1023530_+\|DUF4407-domain-containing-protein	gnl\|CDD\|379583	pfam14362, DUF4407, Domain of unknown function (DUF4407). This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.	7.52008e-113
NC_020156.1\|WP_015361588.1\|1019845_1020211_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.18977e-27
NC_020156.1\|WP_015361589.1\|1020213_1022178_+\|putative-peptidase-M56-BlaR1	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.9118e-18

>NC_020156.1|WP_041566930.1|1026103_1027453_-|sodium:solute-symporter
MDFLTQTSTLQWLLIIASSVIFFILAPYAKDVTTFFKAEHRGKQPNMVMLTGSLIISWIFAKSITNAANLGLEFGLVGGVAYAGYYLSFAVAGIIIYQLRTQGNYTSIHHFLTDKYGKRAVGLFSILISFRLFNEVWSNTMVIGTYFGEIGTTAYYAAIVVFTIMTLAYTLKGGLSSSIFTDVIQMVLFSILLIIILAVIFNEPEVKVGEMITSGTWSMELGLNLFFAAILQSFSYPFHDPVLTDRGFITSPNITRKSFLWAAVLGGICIVLFSLVGVYAQQTGLQGQAAVEVAKKLGVVLLLVINFIMITSAASTLDSTFSSFSKLLTIDLRLGKTVTFGRITMVLVAVLGTIPVFLNAEILSATTISGTMVIGLTPVFLLWKMKAPQISYFLSVICGLVFGVLLVFEWFPQSLIFTRGKYASLLWINIYGISFSFFFFLLPTWIKRS
>NC_020156.1|WP_015361593.1|1025288_1026122_-|metallophosphoesterase-family-protein
MDKKIIDLGRKTGKMLLFGGVYSNLQALQSLMQVAQQHGIAPDNCICTGDIIGYCGQPQETLKLFKNWGAHSILGNVEIQLRDDQDDCGCDFTQGSRCDNFSEIWYAFAKANLHTSSKDYFKALPDHIMFNYAGNKVGVVHGSYDHVSQFIFKSTDWKKKQASLDALNAEVVIAGHCGLPFMDQNKNQLWLNPGVIGMPANDGNLHTWAMIIDDANGLEYQHIPLSYNHATAIHEMRKHQLPNEYAQTLETGIWDNMEILPEEERLLKGKKLELSSY
>NC_020156.1|WP_015361591.1|1023944_1024973_-|DUF2183-domain-containing-protein
MAIFKRDPWILDIYRTYSGESHLYVRGRALEDQPLKHYEQQTLYQTLRNTWRTFKTDEIRNAQVKLTLPNGKFFEVKADHEGYFLFNIATDFNLHNLTDEEGYLLITVSFDEDNSAFAKAKRQKRIKINKFTGETLVPYSEAAYGVISDIDDTIMHTGVTSFLKIRVAFNTFFKNYDRRLPLKGAASFYQLLHRGPSSKGQNPMFYLSNSPWNLYKYLEKFLDFHGFPKGPILLRDFPTPWDRTPKLKRPHKEHELLNILKHYPDMKFILIGDSGEHDVDYYKDTAQQFPDRILAIYLRSVEHKKKMQRVQSIADSFTICPMLLVKESKEAVAHARANGWIV
>NC_020156.1|WP_015361590.1|1022429_1023530_+|DUF4407-domain-containing-protein
MQSFFIFCSGADAELLDQCSAGERNKYAGIGATVFFTALMAFFAASYALFTVFDSYWIATAFGLVWGLLIFNLDRYIVSTLKKSDRKINELWQAAPRIILAIIIALVISKPLELKIFEKEIDQVLLEEKNAMTLENQEQVASLFAVEESAFAKAIQELKSEITTKEAEVEALYNTYITEAEGTSGTNKLGKGPVYKEKREKHDAALAELQALKTTNGEKIAAIELQLADLNTKEATQLAASQPIIENFDGLMARIEALNKLPFITSFFIFLLFLAIETSPIIAKLLSPKGEYDYKYAEREDLVISWVTQQKQQQTVLVQTDKELNNRVYKDIADEDELYAYKKKIARELMQKQADAFYSKQKGILG
>NC_020156.1|WP_015361589.1|1020213_1022178_+|putative-peptidase-M56-BlaR1
MEHFIINSSVCLFVLWLAYKLLLENTSWHVFKRWFLIGSLIISLCIPFIVVETIVVPIEQTPFAAYELALEETIIEETAFEVNWWYVTLGIYIIGFVVMLWRFGKNLNSFRIQQEDEISSYKTYQLILRNQITIPHSFLKRIFVSKKDHGTNKIPAVVLEHEKAHLDQKHTLDILFIESLIVLFWFNPILYIIRYSMKLNHEFLADRVVLNQGITTTEYQQLLLDHATTSYEQSMANTFTFPIIKKRFHIMKTHTSNTSLVLRSLALIPILALLVISCGKEETEFIEIEETVIEEQQNNRKIIAVDPSDPEGNITINGEPHFYKIKGEKIEIYDQNGILQDFESQGYEVVKADEIIEVVEVLENLTPEDITTYNQLAKKHEQYMKLKDQLIVWENETAHMQTVFNSMNEEQRAANEPWPFTGTHYGVEYKPGQIPPPPPPAIIKVVTFEEIEQYNSWAKQINDTNNEAKKTGSNEYAIVKAKDVNTFKSIYDNMTKAQKSNAQPWPNLPPPPPPAAPTANSGYIKVDGNIYHYTLKENDNNFYDRKGNIIDVYGKTVEYVKKEDLPPPPPPADPLDYINDKGDKMNYYIDDVKVNAAKAKAFIKKNGKKGIEIGPVDGVYSLKMYTSSDDKRVYIDQNPDNIYGPTRLDRDLKC
>NC_020156.1|WP_015361588.1|1019845_1020211_+|BlaI/MecI/CopY-family-transcriptional-regulator
MKLSKTEEDLMSHLWKLEKAFMKELLDEYPDPKPATTTIATLLKRMTDKGFVGYELFGKSRQYRPLVKKSDYFSKHVNGLIKNFFNDSASQFASFFTKETDLSKKELEELRKIIDRQIENK
>NC_020156.1|WP_015361587.1|1018452_1019700_+|DoxX-family-protein
MLFTQEHKPHWKLSSRILFRFIFLFLGGFIIMMPARYLFSPLLVWIGENIFESTGRLQLESTGSGDDTMAWLSLFLQLILAILGTVIWSVIDRKRLSYNNLYYWFRTFLRAFVSFFMLLYGFAKVFLIQFNEPSLLDLLQPFGEMSPMGLAWAYMGFSPAFGIFTGLLELIAGILLISKRTQTLGAFMVVGVMTHVAVMNLCFDIPVKIFSIHLALMGLVLFLSDSKRLLFAFFKKSDIKIPEDYRPISPEYDRVISLLKIVGVTLLILGAIGLRFLIYVEQSKDDTRDEFYGIWEVEHFIKNGDTIAPLLTENERWRYVIMQSRDRATMKTMNDSITAYHFKVDSTRTKVSIYKRNETEQIENFKIQKTDSLHFQIIGRLDLDSLEVRLKAKNLKDFTLINRGFHWVNEMPYNK
>NC_020156.1|WP_015361586.1|1016721_1018173_-|hypothetical-protein
MKLRVTLLLLMMTGIALGQVGINTQNPDPSSMLDIMSDDKGFLAPRMDSTSRLDITDPATGLLVYDTTLEAFQYFDGSEWGYLARTQKRSNYKLVKSIADLSDELTAGGNTKYLLNTDFLYEINGQIVVDFPIDLNGAYIEGLDSTEDVLINNSSGSLFEGSKGGGLRNLTLSGSIPSGTKKQLFDISGSSGELLLINNTILTNASKIGNLEGLGTVFFSTTQYLLNDDGFTIENIDNFFVSNIFWTASNTGTFLELNGSFNNLQMNGGRIEAGSSETGIDVSSNPTIVNDATLAQLSFVGDGNSVDGYTAGSYTGFNFTNDWNVNCSGIPFEADQVATGNIFYGGDLTTGYLQTITSGAPVQIKSATDFVATDLFRFRAEDDDNDLIYGGKKRRNVEVNVSLSVRVTSGAGNFYAFAIAKNGSIVLETNSVVQIANDAQIQNIALNGVLTLEPDDKVEIFVDRLTGSGTNSLIVFSENISVR
>NC_020156.1|WP_015361585.1|1015177_1016563_+|dipeptidase
MNTKSYVDQHKDRFINELIDLLKIPSISADPAYKDEVIKTSEVIKSSLEKAGCDRVEICETPGYPIVYGEKIVDKNLPTVLVYGHYDVQPPDPINLWDSPPFEPVIKTTDIHPEGAIFARGACDDKGQMYMHVKAMELMTANDELPCNVKFMIEGEEEVGSESLGWFLERNREKLANDVILISDTGMIAKDVPSITTGLRGLSYVEVEVTGPNRDLHSGLYGGAVANPINILCDMIAQLHDENNHITIPGFYDKVEELSTEERAEMAKAPFSQENYNKALDIAQEHGEKGYTTNERNSIRPTLDVNGIWGGYTGEGAKTVIASKAFAKISMRLVPDQNWHEITELFQKHFENIAPDSVKVKVKPHHGGTAYVTPIDSVGYQAASAAYEDTFGKTPIPQRSGGSIPIVALFEKELNSKSILMGFGLDSDAIHSPNEHFGVWNYLKGIETIPHFYKHFTAMSK
>NC_020156.1|WP_015361584.1|1012813_1014733_-|DUF4365-domain-containing-protein
MRSKTHILEEKSVHELRNIFPDQWVIREKGKDYGIDIEVEIFDKKEQPTGLVFWIQLKATDSKLTKTKRSINMPIAKINQLAKYDLPVAIFRYNSDDNQYYFDWIKRYAFLSSNSKRKSYTIQFNENQLWVDESSSMIDSDLNTLSLYTSKSFKFPLTGYINCISGPSKNKRLLSSAIGNNHFLINLTRDSSKSNLEINLLEGQLVLNLKSIFGSSVGWDVKSETINDVILLDVFHKALVLFLANTGKRKELKQLITEYELLDSFLIHSPILSYILPELIACDTDNVFLPKIIETIYLSDDLINQTYLQAIVFLGHHNLIDRSKVEEFYNRLIRLCIKHKNDSFLSTAYYNYGSYYKSHYILDKAYHYYNKTIKTDNSYLDRSYFKRELAGLLFQIGRYKCSTNLYKQAIELETDNKFLLATYGDALMYSGNYKVALEYFDKFLTINSTLDESKRHDKYEYSIKFILLQYLISISDIEKQERKEFAAEKCLLNLNEDELKQFDKIIRVLSIDALYPTAWFLLMEYCLKNEDPHGYMLSILFQAILLKNKPDIWAFVSVLCTYEDMVNNLLYDIVNTAFFYCRNDFLNALDRLIDLDIYKDFKGEEFLKMVESMINDPKEYPMEIRLWNGEKPKIFKFSK
>NC_020156.1|WP_015361595.1|1028009_1029461_-|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MKITIKYITLLLVIIAGIISCTNDFEEINTNPNAPVSVQPSLLLRQVIYNYGEEMSYEGFVAGGLLSQHMTALDFNLFDRHALKSPQLGGNPWPIFYTNLRDNQIIIDQAQETPAFAVYEGPALIFKAYMTAGLTDIFGDVPYSEAFRGLDGIVEPKYDLQEDIYLQPGGILDNLDQGIAAIENYNGSIALEGDVLFNGDLTAWVRFANSLKIKALMRISARENVNARLQTLFDDQNYIASNDQNAVFNFSDSEPNNFRMARLRAGDFNNFVMSETMEEVLEGLNDARINVLFRPRANNANGDDFEGLLNGIDASSTSVTLADYSLAGTIFRENTGMLDANYMTAWETNFLLAEAAERGLITAPAQTLYETGVTQAHEYWNTELPADYLTTDAAYGLNGNDPIEQIITQKWIASVINGYEGWIEYRRTGFPALKTISASFNNDLIPVRMPYPAEEASLNADNYIVAASATNDNDINVPVWWDE
>NC_020156.1|WP_041566931.1|1029635_1032845_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKRITLFMLLLCGFIGAAQISITGKVSDSAGDPIAFANVAEKGTQNGTTTDGNGNYTITVADNATLVVSFIGYQTATIPVNKETIIKITLEEGDALDEVIVTALGVKRKERELGYAVQTLDTQQIQEVKSVNLLDNLQGKVAGITVTPGATGVGSSSRITIRGEASFSNNNPLFIVDGTPINNNTVFNFSNEAAAGFQEVDFGNGAGEVNQDDIESVSVLKGPAAAALYGTRAANGAIIIETKNGGKQKGLGISYNTSFFVDTAFKLPEFQNEYGQGQGGVFEYVDGLGGGVSDNITYSWGPRLDQGILIPQFDSPVTLPDGTVVRGGDTSLYSGLPITPTEFRSNPDNLKDFYNTGHTFINNIAITDGFEKGDYRLSFTDLRSESIIPGVDLDRQTVAAKLNFRPNDKTKINASINYVNSASGNRPSNGYGSENVNYSLVAWGPRSLNIDNLRNYWQPGLEGVQQYSFNYTFFDNPYFILHENRNSFGRDRLFGNVSLSRELTPELTASIRTGMDYSNEKRRFIRNFSTNRFRNGAYAEHDVFYREINTDFLLTYKKQLGDLNFEARAGGNRLNQTASTTQVQTTSLAQPRIFSLNNAASPIESFGFRSEKRINSLYAFAKAGYKNFLYLDVTARNDWSSALATPFSADNTSFFYPSISTSFILSNVMDLPKEIDFAKIRASYAQVGNDTDPYQTQGTFISQVNVNSQPTFSNQDFIPNQNLRPETTSSVELGFDIRFLKQRINLDFTYYNALTEDQILSLPIGIASGFSQQVVNAGAVRNQGVEIVLNTIPVRTENFEWSSTVNFASNRAIVEDLPQEDGRLTLAYSRVYDSQDQTVWHQVEEGGRIGDLYGTGYLRNENGDFILTQEGRFIADPELRKLGNYNADFTMGFNNSFRYKNWDASFLLDWRQGGIIVSRTLALGAVGGQLSDTANRPDAGIVADGVINTGTEANPVYVQNTTAVSAESYYRQFYDRNHEENNVYDASYLKLRQFSVGYSFSLNEGALGLFNDGAEMRVSLIGRNLFAFSEIPHFDPEQLAVQGQGFVGGVEDLSYASTRSIGVKAGITF
>NC_020156.1|WP_015361597.1|1032896_1033583_-|DUF2064-domain-containing-protein
MIKKIHSNTAILLFAQTAKADALHKPLANNAALMDVLNKKVTKTAKASGFDFYHFTEAEQRGVGFGTRFSNSVQDVFDKGYDSIICLGNDTPLLTVKLIQDAADALKKGKAAKGKSLDGGLYLIALHKNNFDASAFRGLPWQSSNLAVAFHQYITVQNQELEVLEPLADLDTEQDLEGFLSGKDARCSIIRLILSTLSRKQNNYQFHQQQTISVISLLPLNKGSPKAA
>NC_020156.1|WP_015361598.1|1033586_1034651_-|arsenosugar-biosynthesis-radical-SAM-protein-ArsS
MAVNTKTSLKKRDSDLANINKQMQILNGEPFSNGELPSFAKKLKEINELPLRPNTLEILQVNVGYMCNQVCAHCHVDAGPDRKEIMTRDTMGQILDVIKTTGAHTLDLTGGAPEMNPDFRWFVEQAAEAGIKDFIVRSNLTIIRANPKYHDLPDFFKKHNIHVVSSMPHWTKGKTDKQRGDGVFDKSIKALQELNDRGYGMPGSDLKLDLVYNPSGAYLPGDQASMEKEMKAALLEDFGIQFHSLFAITNLPIARFLDYLVASENYEDYMYALVEAYNPAAVAGVMCKNTISISWDGWLYDCDFNQMLDLKVDNKIQHIKDYNEDLLNDRNIQISQHCYGCTAGAGSSCQGVVA
>NC_020156.1|WP_015361599.1|1035011_1035338_-|hypothetical-protein
MNLAELIKYFKENRSKEEFFKNNHLNMESEVVEIYMQKPFSLNNKVKFLEIEKTKGTIEFDINNVKYYNLIDFYAFLDFIKDSMESSNDNLTDAQLAKILLDYCINDA
>NC_020156.1|WP_015361600.1|1035528_1035864_-|carboxymuconolactone-decarboxylase-family-protein
MQKTYYDPKDLKKFGKITEWSEELGEKFFDYYGKVFEEGALTAREKSLIALAVSHTVHCPYCIDAYTSDGLKRGITKEEMMEAVHVAGAIQGGATLVHGVQMMNKVNKLEM
>NC_020156.1|WP_015361601.1|1036011_1037439_-|alpha-glucosidase-C-terminal-domain-containing-protein
MKKYILGLLTLTLIFACKEDKKETVELEETTEVAYTPIQDEDLENAIIYEANIRQYSPEGTFNEFTKDIPQLKELGVKVIWLMPIFPISEKNRKAHGDLLVEDIKDPKEREKYLGSYYAIANYEKVNPDLGTDADLMNLIKTAHDNGMYVILDWVANHTGWDNVWMKKYPDFYTKDENGKMMHPAGTDWTDTADLNYDNHDLWDAMTGAMTHWVTEFDIDGFRCDVAHEVPTEFWNYASENLQKQKPLFMLAESEKKDLFRQAFDMGYNWEGHHIMNELAQGKATVDKWDEYMQRNKENYEEDDILMNFITNHDENSWNGSVNERMGDKAQTMLAFSYVIPGMPLIYSGQEYDMDYRLKFFEKDTIPKTKGKTWDIMKKLGALKANNPALHGGKNAASYERLKTSDDSSIYAIKREKDGETIFYIANFSENRQNVKVEGLQGTVSDALRGGSTKFTEENRLDLPPYGYRILTLEK
>NC_020156.1|WP_015361602.1|1037498_1039859_-|hypothetical-protein
MKNILILLIAILILSCDTKKEEELAKASVIQVMTTPIYENATGNTELIYADYLGDIKPDSISLNVGIAQREGVNIDSVFTFEVDEIEIGGAPFVTHITLWTKGIRNDIPVFRSTSKTIEIPYSGNFKNVRIKGEFTNWAPQDTEVVDGKIIYRATVPQGKFQYLFLEGGKEEKLTGNEPNVVSNGMGGFNRVIDNSRKANPAQLSYGEILDQGFTFQSTGELDNVVILYENQKIEAQKEGNTFTVQLPKVDFSDRISKTQLVRVYASDENGRTNDLLIPVQDSQVVKDPTKLARSDFHTQVLYFMMVDRFLDGDTSNTKPVPDPEILPAANYMGGDLAGVLEKINDGYFEEMGINTIWLSPITQNPEGAYGLWPEPRTKFSGYHGYWPISNTKVDYRFGDEKVMKEIIEEAHKRDMNVILDYVANHVHEEHPVYKNHPEWATNLYLEDGSLNTERWDDQRLTTWFDTFMPTLDFSKPEVVEKMTDSALYWVTEYKLDGFRHDATKHVPEEYWRTLTQKVRNNTDRPIYQIGETYGSYDLIRSYVSTGMLDAQFDFNQYDAAVSAFAKADSDYANLTETLKKGLEYYGHHHLMGNISGNQDRARFISYASGDVRFDEDAKKAGWTRDIVMSDSTAYDRLGMLQAFNMTMPGVPVIYYGDEYGSIGANDPDNRRMMKFDNLSDRETNLRELVQELVKLRRNSMSLLYGTTQVMSESNGILDIQRRYFGEQTTVFFNETGLILNMVANNERFRESGTAINAVVTDKNIQIKPGNFMILQMKDEKSEEKK
>NC_020156.1|WP_015361603.1|1040193_1042173_-|glycoside-hydrolase-family-13-protein
MIKHITIVLSILLSLAFAKAVTAQYTEVELPLEHIEPRFWWSGMEHNEVEVMFHGPNIAKFDEVRSDLTILNVRKTDNPNYLFVTFDMSIEPNRYNINLCTEDCNEGDTIAIVYDLLERQQNSKERKGFDSSDAIYLIMPDRFANGDPSNDTVEGLAEKANRDFKGGRHGGDIQGIIDHLDYIDDLGATAIWSTPLLEDNDARYSYHTYAQSDLYKIDPRYGTNEDYKRLGDELHKRDMKLIMDYVTNHWGATHWMMQDLPTKTWIHQFDDNEGKDFPVAGYANSSYRQTTQMDPNVSKRDAIYAEKGWFVSTMPDINQSEPLALNYLIQNTIWWIEYAGLDGLRVDTYSYNEKEGIAKWTKAIMDEYPNFNIVGETWLHDQAQIAYWQKDSKIAAIQDYNTHLPSVMDFTLHDAIMVAFNENEQGWDKGMSKVYENFVNDFLYPDIDNILVFAGNHDTNRINGNGLYNGDLAKYKLAMTLVLTTRGIPQIYYGDEIGMGGNRDTDGDGDIRRDFPGGWNGDVVNAFDKPSKEQKAYQDFTKKLLNYRRNKEVIHNGKLLQYVPENNCYVYFRYAHEELRSTGQVGLALHESRVMIIINNNTEQVTLDLNKFAEGIDGRKKGQDILTNELFDLTKNIKVKGKTSLVIDLDHRGSGPRWF
>NC_020156.1|WP_015361604.1|1042215_1044396_-|glycoside-hydrolase-family-97-protein
MKNLVLVFKLVFCIIFCFSSAFAKAELKTSFFQAEKKQKASQLQTLESPDGSFKMQFRLSDAGIPQYQLYFKNKEVIKLSSLGFDIKNDSKSLKDDFTIIDTESSTFDETWEPVWGEESQIRNHYNELAVILKQKETDRKMIIRFRLFNDGLGFRYEFPQQDFTYFTIKEELTQFAMTGDHTAYWIAGDYDSQEYDYTTSRLSEIRSLHKESISPNASQKQFSPTGVQTALMMKTDDGMYINLHEAALIDYSCMHLNLDDKNMVFQSWLTPDVNGDKGYLQAPTVTPWRTIIVGNNATDILASRMTYNLNEPVAIADTSWITPVKYVGVWWEMITGKSSWAYTDDIPAIQLGKTDYTKLTPNETHGATTEHVKELVDFAALHGFDAVLVEGWNEGWEDWFGQSKDYVFDFVTPYPDFDVEEVHKYAKSKGVKMIMHHETSGSTRNYERHLDEAFQFMNAYDYEAVKTGYVGNILPRGEHHYGQWTVNHYQYVLEKAADYKIMINAHEAVRPTGIARTYPNLIGNESARGTEFQAFGGSKPNHSTILPFTRLIGGPMDYTPGIFEMDISKLNPNNNSHANFTIANQLGLYVVMYSPLQMAADLPENYNKFLDAFQFIKDVPVDWDKSVYLEAEPGDYITTARKDKNSSSWFIGNSNGTRARTSRISLDFLEKGKKYKATIYADAQDAHYKTNPQAYKITTKKVTSKSDLKIFTAPGGGFGISIVEIK

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Crispr_ID: NC_020156_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020156_2

1101825-1102018

Orphan

Consensus_repeat	Method
TCATGTCAGTAACGTTTGAAACGTCCCAATTATTTAAAGGCTGAT	PILER-CR

2 spacers

The CRISPR arrays of NC_020156_2

>merge|NC_020156|2|1101825-1102018|PILER-CR
CATGTCGGTAACGTTTGAAACGTCCCATAAAGCTAATGGCTGATTATATGATGAAGTTTGTGAAAACATGTAACTCATATCAGTAACATTTGAAACGTCCCAATTATTTAAAGGCTGATTGAAATTAAAAGCTCGATGAAACATACTATTCATGTTAGTAACGTTTGAAACGTCCCAATTATTTAAAGGTTGAT

>NC_020156|2|1|1101825-1102018|PILER-CR
CATGTCGGTAACGTTTGAAACGTCCCATAAAGCTAATGGCTGATT	ATATGATGAAGTTTGTGAAAACATGTAACTCATATCAGTAACATTTG
AAACGTCCCAATTATTTAAAGGCTGATTGAAATTAAAAGCTCGAT	GAAACATACTATTCATGTTAGTAACGTTTG
AAACGTCCCAATTATTTAAAGGTTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020156.1\|WP_015361650.1\|1095043_1095490_+\|PA2169-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|378201
NC_020156.1\|WP_015361663.1\|1113975_1114635_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361647.1\|1090078_1090642_+\|DUF3109-family-protein	unknown	unknown	gnl\|CDD\|378636
NC_020156.1\|WP_015361649.1\|1092146_1094753_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|178056
NC_020156.1\|WP_015361662.1\|1113142_1113967_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NC_020156.1\|WP_041566939.1\|1114625_1115180_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361648.1\|1091004_1091997_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|215272
NC_020156.1\|WP_015361652.1\|1098223_1099063_+\|bacteriorhodopsin	unknown	unknown	gnl\|CDD\|320370
NC_020156.1\|WP_015361645.1\|1089005_1089713_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NC_020156.1\|WP_015361646.1\|1089766_1089934_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361644.1\|1088408_1088963_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_020156.1\|WP_015361660.1\|1110792_1112508_+\|sodium/nucleoside-co-transporter-permease	unknown	unknown	gnl\|CDD\|224883
NC_020156.1\|WP_041566937.1\|1106988_1107969_-\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NC_020156.1\|WP_015361661.1\|1112587_1112986_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361651.1\|1095561_1098000_-\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|376979
NC_020156.1\|WP_041566938.1\|1108253_1109000_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|238847
NC_020156.1\|WP_111474675.1\|1104262_1106809_-\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
NC_020156.1\|WP_015361658.1\|1109097_1110066_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_020156.1\|WP_111474634.1\|1086087_1088280_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015361659.1\|1110166_1110778_+\|bifunctional-nuclease-family-protein	unknown	unknown	gnl\|CDD\|376830

Protein	Function_ID	Function_description	E-value
NC_020156.1\|WP_015361650.1\|1095043_1095490_+\|PA2169-family-four-helix-bundle-protein	gnl\|CDD\|378201	pfam09537, DUF2383, Domain of unknown function (DUF2383). Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.	5.95108e-38
NC_020156.1\|WP_015361647.1\|1090078_1090642_+\|DUF3109-family-protein	gnl\|CDD\|378636	pfam11307, DUF3109, Protein of unknown function (DUF3109). This bacterial family of proteins has no known function.	6.3648e-113
NC_020156.1\|WP_015361649.1\|1092146_1094753_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|178056	PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit.	0
NC_020156.1\|WP_015361662.1\|1113142_1113967_+\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NC_020156.1\|WP_015361648.1\|1091004_1091997_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|215272	PLN02492, PLN02492, ribonucleoside-diphosphate reductase.	0
NC_020156.1\|WP_015361652.1\|1098223_1099063_+\|bacteriorhodopsin	gnl\|CDD\|320370	cd15242, 7tm_Proteorhodopsin, green- and blue-light absorbing proteorhodopsins, member of the seven-transmembrane GPCR superfamily. This subgroup represents blue-light absorbing and green-light absorbing proteorhodopsins (PRs), which act as a light-driven proton pump that plays a major role in supplying light energy for phototropic marine microorganisms, by a mechanism similar to that of bacteriorhodopsin. PRs are found in most marine bacteria in surface waters, as well as in archaea and eukaryotes. They belong to the microbial rhodopsin family, also known as type 1 rhodopsins, comprising the light-driven inward chloride pump halorhodopsin (HR), the light-gated cation channel channelrhodopsin (ChR), the light-sensor activating transmembrane transducer protein sensory rhodopsin II (SRII), the light-sensor activating soluble transducer protein Anabaena sensory rhodopsin (ASR), and the other light-driven proton pumps such as bacteriorhodopsin (BR). They have been found in various single-celled microorganisms from all three domains of life, including halophile archaea, gamma-proteobacteria, cyanobacteria, fungi, and green algae. While microbial (type 1) and animal (type 2) rhodopsins have no sequence similarity with each other, they share a common architecture consisting of seven-transmembrane alpha-helices (TM) connected by extracellular loops and intracellular loops. Both types of rhodopsins consist of opsin and a covalently attached retinal (the aldehyde of vitamin A), a photoreactive chromophore, via a protonated Schiff base linkage to an amino group of lysine in the middle of the seventh transmembrane helix (TM7). Upon the absorption of light, microbial rhodopsins undergo light-induced photoisomerization of all-trans retinal into the 13-cis isomer, whereas the photoisomerization of 11-cis retinal to all-trans isomer occurs in the animal rhodopsins. While animal visual rhodopsins are activated by light to catalyze GDP/GTP exchange in the alpha subunit of the retinal G protein transducin (Gt), microbial rhodopsins do not activate G proteins, but instead can function as light-dependent ion pumps, cation channels, and sensors.	1.43064e-32
NC_020156.1\|WP_015361645.1\|1089005_1089713_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	9.57873e-150
NC_020156.1\|WP_015361644.1\|1088408_1088963_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.2968e-94
NC_020156.1\|WP_041566937.1\|1106988_1107969_-\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.07315e-176
NC_020156.1\|WP_015361651.1\|1095561_1098000_-\|sodium-translocating-pyrophosphatase	gnl\|CDD\|376979	pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists.	0
NC_020156.1\|WP_041566938.1\|1108253_1109000_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	2.76739e-61
NC_020156.1\|WP_111474675.1\|1104262_1106809_-\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	8.00013e-17
NC_020156.1\|WP_015361658.1\|1109097_1110066_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	4.3181e-80
NC_020156.1\|WP_015361660.1\|1110792_1112508_+\|sodium/nucleoside-co-transporter-permease	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	7.77122e-133
NC_020156.1\|WP_015361659.1\|1110166_1110778_+\|bifunctional-nuclease-family-protein	gnl\|CDD\|376830	pfam02577, DNase-RNase, Bifunctional nuclease. This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site.	1.00629e-58

>NC_020156.1|WP_015361652.1|1098223_1099063_+|bacteriorhodopsin
MIQDLGNSNFENYVGATDGFSEMAYQMTSHVLTLGYAVMFAGLLYFILTIKNVDKKYRMSNILSAVVMVSAALLLYAQAGNWTESFAFDAERGKYFLVEGGDLFNNGYRYLNWLIDVPMLLFQILFVVQLTKSKLSSVRNQFWFSGAMMIITGYIGQYYEVTDLSAFFIWGAISTVFFFHILWLMNKVIKEGKVGIPKKGQKILSNIWILFLVSWFLYPGAYLMPHLGGIEGFLFNESGVVGRQITYTIADVCSKVIYGVLLGNLALVLSKNKEMIETA
>NC_020156.1|WP_015361651.1|1095561_1098000_-|sodium-translocating-pyrophosphatase
MESYMIYMPLVLAALGLLYMFIKKSWVLKQDAGDGKMKEISDYIYEGALAFLKAEYKLLAIFVAIVSVALFVVSLVVPTTHWLIVIAFIFGAVFSAYAGNIGMKIATKTNVRTTQAARTSLPNALKISFGGGTVMGLGVAGLAVLGLTAFFIFFYHYFMGGQWTDTDAMTIVLETLAGFSLGAESIALFARVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDVAGMGADLFGSYVATVLAAMVLGNYVIKDMGGNIVSEGFGGIGPVLLPMAIAGVGIIISVIGTMLVKIKSNDAKEAQVMGALNVGNWTSIVLVAAACFGLCKWMLPETMRMEFFGEGLLEISSMNVFYATLVGLVVGAVISSVTEYYTGLGKKPILKIVQQSSTGAGTNIIAGLATGMISTFPSVLLFAGAIWASYAFAGFYGVALAASAMMATTAMQLAIDAFGPISDNAGGIAEMSEQEPIVRERTDILDSVGNTTAATGKGFAIASAALTSLALFAAYVTFTGIDGINIFKAPVLAMLFVGGMVPVVFSALAMNAVGKAAMEMVEEVRRQFRDIPGIMEGTGKPEYDKCVDISTQASLKQMLLPGVLTIGFPLVIAFVPMIFGMDHLAIAEMLGGYMAGVTVSGVLWAIFQNNAGGAWDNAKKSFEAGVEINGEMTYKGSDAHKAAVTGDTVGDPFKDTSGPSMNILIKLTCLIGLVIAPILGGHTDDAQAAVPTVIEVNNIQDVAVNGESITIQDVDVQKTVDDETGMVTANVTIKRKVNGATVSKTHHLKGTKAEVDAQIAQLDAEVTSFK
>NC_020156.1|WP_015361650.1|1095043_1095490_+|PA2169-family-four-helix-bundle-protein
MNYTKEVSQKLNDLLTKNYDAEAGYKLAKEQVDSTRLQNFFDRQVQERYNFGHELKEEIRSYGEEVDKGTSLKGDAHRTWMNLKSTFTSDNEEAILEEAIRGEKTAVEEYNKVISETTLPPSTKSILTKHRDEILNSLTRVIAMEEIA
>NC_020156.1|WP_015361649.1|1092146_1094753_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MFVVKRDGHKEPVMFDKITARVRKLCYGLSNHVDPVKVAMRVIDGLYDGVTTSELDNLAAETAATMTTAHPDYARLAARISVSNLHKNTKKTFSDVVTDLYEYVNPRTSKKAPMISDEVYKVIQDNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMRVSVGIHIDDLDAAIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEGIYDTLKQTAKISQSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGGGKRKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVETNDTWTLMCPHECPDLYNVHGDEFEALYTKYEQEGKGRKTIPARELWDKILESQIETGTPYMLYKDAANNKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASIALPMFVKDGAFDHKALYKVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGIQGLADAFIMLRLPFTCDEAKQLNSDIFETLYFAACEASMEMAQEEGAYSTFAGSPMSQGQFQYNMWNINDDQLSGRWNWADLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLLKDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRERGYFIDQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTVTKEKKAVPVATPVSTPVINTAAPAQAANTLRAQQVQKPAPVAAPTPVAPAPGQTQSLFVDDSAPAAANVMNQAQPIVNTNVVTENEEMSAEEYKLILQRAKEAASNGDDCEMCGS
>NC_020156.1|WP_015361648.1|1091004_1091997_+|ribonucleotide-diphosphate-reductase-subunit-beta
METTQEPILQENPNRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDLTDWQNSLNSDERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDKEKDQLFKAIENFPAIKLKADWAMKWIESPSFAERLIAFAAVEGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNHHLVNKVPKERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLVELECDPVYNVTNPFDFMDLIGMEGKTNFFEKRVGEYQKAGVMNSTKEDKSTMDSFSLDADF
>NC_020156.1|WP_015361647.1|1090078_1090642_+|DUF3109-family-protein
MFQLGKTIVSDDLLEKDFVCNLTACKGVCCVAGEAGAPLERAELDILDNEYENIKPFLRPEGIAAIEEQGTWIERENGELETPLVDGAECAYATFKEDGTALCGIENAYRDGKTTFYKPISCHLYPVRIQEYTDFKAVNYHKWQICDDACALGEELGVPVYKFLKEPLTRKFGQKWYSELEEIAKDF
>NC_020156.1|WP_015361646.1|1089766_1089934_-|hypothetical-protein
MSQIFWDDSLNLNSNSNLKRASQRFLPFSKTEDGLQSWKLIIAFIYLAFAKADLK
>NC_020156.1|WP_015361645.1|1089005_1089713_-|UMP-kinase
MKYKRILLKLSGEALMGERQYGIDPKRLAEYAQEIKEVTDLGVEVAIVIGGGNIFRGVAGASNGMDRVQGDHMGMLATVINGLALQSALEDAGIPTRLQTAIKINEVAEPFIRRKAMRHLEKGRVVIFGGGTGNPYFTTDSAAVLRAIEIEADVILKGTRVDGIYTADPEKDASATKFDFITFEDVLRKGLKVMDTTAFTLSQENELPIIVFDMNTNGNLIKLLKGENIGTKVQL
>NC_020156.1|WP_015361644.1|1088408_1088963_-|ribosome-recycling-factor
MTEEINFILDSTKENMDNAITHLEKQLLSIRAGKAMPAMLSTVMVDYYGSQTPLSQVANVSTPDARTLSISPWEKGMITEIEKGIMYANLGLNPMNNGESIIINVPALTEERRKDLVKQAKAEGEEAKIGVRNDRKVAMNDLKKLDISEDLLKNAEGDVQDLTNKYVAKIDEHLTVKEKEIMTV
>NC_020156.1|WP_111474634.1|1086087_1088280_-|hypothetical-protein
MKFTVYFLSFLFCAITIAQNKNTQEAQQLMEKVLDAIPQNDPTTVLDSYKYDAYENLKVSGDPEALTGPGYKKTELRKTLKKTGVFFTEKTSVHIYNQKEGYKEIITGANMPGFDEPVYPIYNINFQSENVYDSRYIIFDQEYISPLYKKAISYYDFNVEKDSIISGRKVTKINFSPKDENNNVLFLGSLFIDQENYAVARAIFEKSGDLNIKAYHDFTYESKSSLWYNSSRKLYVRQEKTRKELELFGGRLEVGIEKKVNDDDKAAEELYLIIEAINANFKTNKEIDYGRKGLKIEIQDSALTQKEIYWDKYRGDDAFSTTELARFMDLDSIVAASKITRNLETLDKFKVGYFPVGFVDIDLKYLVKFNDYEAFRVGIGGQTNEKLSDNFRINGYLAYGTKDAVFKHKIGIGYRLNKEKNTWLNIYKQDDITEFAAESFLTDARVYSLFEPRLINIPTFYLYKQYGMSLQQRLFPSVISEVSLSRKRISQTTSYQFIPDNDVVFSDYVLAEVSLGARWSPLSDFMRTPKGYQEISRGYPILSGQITQGIRGIAESNFNYLKVSGKAEYAIKRPDNSFTEFLVEGHYSTGEVPLTHLFHAYPNAPNKDEVLQRFSVAGRRSFETMYFNEFFSDKIMIGQVRHRFAPFDVFSFLKPELVLVSKVAWGDIDNVERHQNVTVNSLEKGYLESGLELNKLIFGFGLSASYRYGAYHLPDFEDNLALKFTFYLEL
>NC_020156.1|WP_111474675.1|1104262_1106809_-|carboxypeptidase-like-regulatory-domain-containing-protein
MENIQIDIPLSRKRDSYHQLANYLSLFVFFLFTAAVVAQTKVGGVIYDEFGDPVPFANVVFPNSSEGTISNDNGRFYLQSDQTYKTVEFSFVGYKTQTITLESRVSTDLKITLATDTAELDAVVVYSGKTSKKNNPALDILRKVWENRRKNGLSQFKQYQYDKYEKLEFDMNTIDSAMINSKLFNGMEFIFNYADTSRVTGKTYLPIFINESLASVYGDNEANKEKEVIKANKNSGFSDNQTIIAFVKDLYADIDVYERYLKFFDKSFTSPVGKAGIDTYNYVLRDTAMVDGVEAYNIVYYPRRKGELTFKGDFWVAADSYAIKEINLQATKSANVNWVKEIYIEQEYDVLNDSLFLITRDYFMSDFALNKKEESKGIYGKRTTLFDNYQFDIKKEEDFYKRRVNDYDPMIYDRSEEYWDENRLEKLNKDEKQIYTMLDTLKTNKKFKRLYNIGTILASGYYEVDNFDIGPVFGLLGFNQVEGMRVRLGGRTYFTSNDLWRLEGYLAYGFRDNQFKYGLAGKWLIDKKSRLTISGGNRRDIEQLGASLTNTNDVLGRSLASSSLITAGNNNSLSSINLTTLGISFEPKYNLEFRLGTSYRTIKSGAPDIFSLDYFDPDSPTGIATETRQADASLTMTYTPGRKTSNYGVDRTLINSGEYPILYASYTKGFDGFLESDFNFDKVQFYYSHPFQLGPFGRLTARVEAGKTFGEVPLALLNVVPGNQTYFNLTGAFNTLNFYEFVTDEYVTMHLDHNFNGRIFSRIPGLRDLNLRELVGIRAVYGKISDENIALNAGNINYLAPEDVFWEYSAGIGNIFKILRLDVSFRGGYNFLPDARSMAITGSFGFSF
>NC_020156.1|WP_041566937.1|1106988_1107969_-|pyruvate-dehydrogenase-complex-E1-component-subunit-beta
MKTIQFREAICEAMSEEMRRDEAIYLMGEEVAEYNGAYKASKGMLDEFGPKRVIDTPIAELGFAGVAIGSTMTGNRPIVEYMTFNFSLVGIDQIINNAAKIRQMSGGQFKCPIVFRGPTASAGQLAATHSQAFENWFANTPGLKVIVPSNPYDAKGLLKAAIRDDDPVIFMESEQMYGDKGEVPEDEYVLPIGVAELKREGSDVTIVSFGKIIKEAYKAADELEKEGISCEIIDLRTVRPYDKEAILKSVKKTNRLIILEEAWPFGNVSTEISHMVQAEAFDYLDAPIYKINTQDTPAPYSPVLFEEWLPNHKDVIEGVKKVMYKK
>NC_020156.1|WP_041566938.1|1108253_1109000_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKILVCISHVPDTTSKINFTDNDSQFDTSGVQFVINPNDEFGLTRAMWFKEKQGASVDVVTVGGAEVEPTLRKALAIGADTAIRVDTPAVDGYQVAKQLSAVVKDGGYDLVIAGRESIDYNGGMVPGMVAAMTGASFVNTCISLEIDGNNATAIREIDGGKETSTATLPLVIGGQKGLVEESDLRIPNMRGIMMARKKPLNVVPATDASSETNSVSFSKPEPKGAVTLVEADNLDKLIDLLHNEAKAI
>NC_020156.1|WP_015361658.1|1109097_1110066_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSVLVYTESENGSFKKTAYEVASYAKGVADMMGTDVAAISFNANDAGDLGTYGVNRLHNVSDSKLDKFNAAAYANAIAQAAKTEGAKVVVISSSADSRYLGSLVSVHLEAGYVSNVTELPSSTDPFTVKRTVFTNKAFSNTAITTDVKLVGLSKNAYGLKENATECAVQSFEPSLTDNDFSVTVQSVDKATDKVTIADAEVVVSAGRGMKGPENWGMIEELADVLGAATACSKPVSDLGWRPHGEHVGQTGKPVASNLYIAIGISGAIQHLAGINSSKVKVVINTDPEAPFFKAADYGVVGDAFEVVPALIDKLKAFKAANA
>NC_020156.1|WP_015361659.1|1110166_1110778_+|bifunctional-nuclease-family-protein
MSLKRLNIRGISYSQTQNGAYALVLKEVDGPRQLPIVIGAFEAQSIAIALEKELSPPRPLTHDLFKSFAQRFSIVVKQVIIHKLVDGVFYSSLICERDKIEEIIDARTSDAIALAVRFKAPVFTYENILEEAGIQQHIKPDKELQMEEFEKEDMIEDLISSASQDSNDYSEFSLSDLNKMLGEAVANENYELAAQIRDEISKR
>NC_020156.1|WP_015361660.1|1110792_1112508_+|sodium/nucleoside-co-transporter-permease
MNFNIARFFTLVVFLFISITTFSQESTAIEGTWIIDSIKNDNTISTASQKLDSISFKNQDYRYYTGIDSLNSQGRFILQGDFIALYPDQETQGFKKFDLKKVAGDSLSLKVNESTYNLLLRKEVVIEKNVEIKNDLGFSFESFYRGLIGMVFILGLCYVLSKNRKKIDWRLVIVGITLQIVFAISVLKFESVAYVFDSISTGVVRFLAVSEAGAEFVFGNLIDVKGSWGYVFAFKVLPTIIFFSAFTSLLYYLGILQKVVYVLAWIMSKTMRLSGAESLAAAANIFIGQTEAPLVVKPYLEKMTKSEILCLMVGGMATIAGGVLAAFIGFLGGESEAQQILFTKHLLTASIMSAPAAIVIAKMLFPEEDKTKIDRSLKVSKDKIGSNILDAISRGTTDGLKLAVNVGAMLLVFTALIAVVNFGLKDLIGEYTGLNAIIESSSNGRYDGFSMQYILGNLFAPIAWIIGVHADDIVLVGQLLGEKTILNEFIAYGSLKDLKEAGKIAHPKSIIIATYALCGFANFASIGIQIGGIGVLAPGQRKTLAAFGIKALIGGTCAALLTATIAGMLFG
>NC_020156.1|WP_015361661.1|1112587_1112986_+|hypothetical-protein
MKTANYNTHYRYPFGDIYCYDHYVIGKISSGVFVNNEIAKRILTDINKHYGKQKFVFVSNREFENKIDLSVYKLIDAKTMVGIAVVGTTNEQKVQAASEQSIYSGSFSYFNNLESAIAWAESFAKDVSNFKN
>NC_020156.1|WP_015361662.1|1113142_1113967_+|thymidylate-synthase
MKQYQDLLQDILDNGVDKGDRTGTGTRSLFGHQMRFDLQKGFPLVTTKKVHLKSIIHELLWLLSGDTNIKYLKDNNVRIWNEWADENGDLGPVYGHQWRNWDSQGIDQIKNVIDTLKTNPNSRRMMVTAWNPSVMPDTSKSFSENVANGKAALPPCHAFFQFYVANNKLSCQLYQRSADVFLGVPFNIASYALLTMMVAQVCNLEYGDFIHSFGDVHIYNNLREQVELQLTRAPRDLPTMKINPEIKDIFAFKYEDFTLENYNPHPAIKGIVAV
>NC_020156.1|WP_015361663.1|1113975_1114635_+|hypothetical-protein
MRITIIIFLLSVSSVFSQENIFNNYRLVDTTQYKTTRALFLHDLTLKESHNEGKVILEWKNQRNITFHLIEMRDPTTGELIYRQKHYTNIAEFPKEGDFTIYPLFKKQKGEPVSINYEDAAKRNFEPISSDSYFTFLEKQSELNERKANAAAARKKQEAAQKEYENARANRITPKVVILIGALFFFAFVIVFTIWLVRYLTKPKESEHYLNRDRRKRWD
>NC_020156.1|WP_041566939.1|1114625_1115180_+|hypothetical-protein
MGLKRAVLSFLFIHCTATILAQNNVVDSTLLKTKPLFGLKKIDSIRNAYYLPWKFIDTIDYPSRYLTKVENIELEIKDQNTAVLSWDHHKTIDSFLVEMRYDLNKQLFHRKIYHKSSILVPRGQLYTIYPFYKNKLGKLAPAKNETIALKKDAYEGFWNFLASISLFLTLGMGIYHFIEKRKSK

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Crispr_ID: NC_020156_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020156_3

2316163-2316242

Unclear

Consensus_repeat	Method
TTCCAGCCCCAACCGCCATTCCATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020156_3

>merge|NC_020156|3|2316163-2316242|CRISPRCasFinder
TTCCAGCCCCAACCGCCATTCCATGCATAAGGATTATTCCATCCGAATCTGTTGTTCCAGCCCCAGCCGCCATTCCATGC

>NC_020156|3|2|2316163-2316242|CRISPRCasFinder
TTCCAGCCCCAACCGCCATTCCATGC	ATAAGGATTATTCCATCCGAATCTGTTG
TTCCAGCCCCAGCCGCCATTCCATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020156.1\|WP_015362725.1\|2306151_2306502_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015362731.1\|2316926_2318405_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236327
NC_020156.1\|WP_015362720.1\|2302672_2302909_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015362739.1\|2323695_2324121_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015362722.1\|2303696_2304059_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|379152
NC_020156.1\|WP_015362724.1\|2305900_2306122_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NC_020156.1\|WP_015362726.1\|2306919_2308407_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_020156.1\|WP_015362738.1\|2322517_2323654_-\|glycosyl-hydrolase-53-family-protein	unknown	unknown	gnl\|CDD\|311610
NC_020156.1\|WP_015362734.1\|2319089_2319866_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015362735.1\|2319991_2321038_-\|secreted-protein	unknown	unknown	unknown
NC_020156.1\|WP_111474708.1\|2309411_2313956_+\|T9SS-type-B-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275004
NC_020156.1\|WP_041567085.1\|2302985_2303390_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_020156.1\|WP_015362727.1\|2308555_2309227_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|376498
NC_020156.1\|WP_015362736.1\|2321115_2321889_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015362740.1\|2324264_2326049_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NC_020156.1\|WP_015362737.1\|2321878_2322448_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_020156.1\|WP_015362732.1\|2318599_2318854_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NC_020156.1\|WP_015362741.1\|2326218_2326383_-\|Lacal_2735-family-protein	unknown	unknown	unknown
NC_020156.1\|WP_015362723.1\|2304033_2305509_-\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271361
NC_020156.1\|WP_015362729.1\|2314171_2315680_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457

Protein	Function_ID	Function_description	E-value
NC_020156.1\|WP_015362731.1\|2316926_2318405_+\|proline--tRNA-ligase	gnl\|CDD\|236327	PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.	0
NC_020156.1\|WP_015362737.1\|2321878_2322448_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	2.85938e-31
NC_020156.1\|WP_015362722.1\|2303696_2304059_+\|CoA-binding-protein	gnl\|CDD\|379152	pfam13380, CoA_binding_2, CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.	6.80117e-22
NC_020156.1\|WP_041567085.1\|2302985_2303390_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	2.91935e-33
NC_020156.1\|WP_015362726.1\|2306919_2308407_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_020156.1\|WP_015362738.1\|2322517_2323654_-\|glycosyl-hydrolase-53-family-protein	gnl\|CDD\|311610	pfam07745, Glyco_hydro_53, Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.	1.33439e-99
NC_020156.1\|WP_111474708.1\|2309411_2313956_+\|T9SS-type-B-sorting-domain-containing-protein	gnl\|CDD\|275004	TIGR04131, conserved_hypothetical_protein, gliding motility-associated C-terminal domain. This model describes a protein homology domain unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility. Proteins with this domain frequently pair with members of family TIGR03519, whether one such pair or many occur in a genome. More than 30 members may occur in one genome.	2.78008e-45
NC_020156.1\|WP_015362724.1\|2305900_2306122_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	1.00475e-36
NC_020156.1\|WP_015362727.1\|2308555_2309227_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|376498	pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I. This family includes GTP cyclohydrolase enzymes and a family of related bacterial proteins.	2.79005e-84
NC_020156.1\|WP_015362740.1\|2324264_2326049_+\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	7.54009e-147
NC_020156.1\|WP_015362732.1\|2318599_2318854_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	2.61639e-20
NC_020156.1\|WP_015362723.1\|2304033_2305509_-\|sodium:solute-symporter	gnl\|CDD\|271361	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain. NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and 2. SMCT1(the product of the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (product of the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NC_020156.1\|WP_015362729.1\|2314171_2315680_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.18292e-09

>NC_020156.1|WP_015362729.1|2314171_2315680_-|outer-membrane-protein-transport-protein
MKKFLILSALFAGALFSNAQSVADGLLYSGQDLQGTARYRGLSGAFGALGGDLSAIGSNPASSVVFANNYAGVSLGFLGNENDTNYFNTNTNTTSNEISLNQAGGVLVFESAGNSKISKFAISLNYDLNRNFDNFINARGVSPVSVSQYFLNNANGIALDNFVVRPGETASGLYQFLGQDFGFGAQQGFLGYESFVLDSTDPSDIDNTSYVSNTGTGSFNQDYFVETLGYNSKISFNGALEIDKKWSLGINLNSHVISMERFTSIQENNSNADASINNVRFNNSLFTDANGFSFQLGLIGKLTNSLRVGATYESPTWYTVEESQIQDISTSGLNSPTAVVRPEILNLFEPYRLRSPGSVTGSLAYIFGSKGLISIDYSSRDYSQLRFNPDNNILFRDNNRFASENLQRAASIRLGGEYRIKNWTLRGGYRMEESPYENESIMGDLTGYSLGIGYTWGKTILDISYDSSQRDFSQQLFDTGLDTQAGVQNRMDNIVFTLGFNL
>NC_020156.1|WP_111474708.1|2309411_2313956_+|T9SS-type-B-sorting-domain-containing-protein
MKRFLTLLLLLLSYYSYSQANINMPLGTNNGNGFRFIGCNNSAFNDSGGNAPYGNNEDNISVFCPSIDTDRMILEFRVVDILAGDVLTIYDGDSTAAPVLATITNSTTPFAFQASATNPTGCLTVRFVSNGSGTATGWRALRSCFNPCQAISTVITTTPATSVDGILRICQGETVTFDGSANFNVDGTGATYEWDLANGNGLNTGQIQTETYTIPGIYQTRFIVTDNTGCRDRDEIDLVIHVSTTPDFTGTEAVDDELCFGDSTDITGVVNTTEFAISPSPPIAGTTYLEDGSGVSYQTCINVDLFPTGQGVASASDLVNIFLNMEHSYLGDLQVTLTSPNGSSVDLHVFSNGGTTNLGNPVTNVDRVPGTGFDYVFNETAAQTWAQAAGGVATIPAGDYLPVDPFSNFIGSPLNGLWCLTVTDNLGIDDGYIFSWGLDFNPAIIPAELSFTPGETSEMWQTNPDITMVNGNTITVTPSVEGRNCYDFQFTDSFGCIYIEQVCINVLAEIPSEIPEDIILCNTTGTTTVDLTQNDSVILNGLPSSDYVITYHNSQSDAENGVGAITNATAFPIVMPPMTVFSAITYTTTNCIVVDSFTVDVIDFNNLTIPDFEQCGAITNFDLVSYVTTALSSGGSGSSSSFTLEFYISLTDAQNQTNPILNPTMFDLSAGTVTIYVRIVSTTDPGCNSINPFNITAGFIPVPTIPPNMVVCDDLSNDGQEIFNLSDQDAIILNGQSGITVTYHLTANDAASGTSPLNAAGYQNISNPQTIYIRLVNNSGLMCDSNTIATFDLVVNRTGIVNPVTDLIACDDVNNGIEQFDLTTQLPDILGSQIPAENTVTFYTSQANADARTNEIINTSMYTAVSTTGAVTIFVRVENINATNCYTTGSFDLIMSATPVANPIADFIVCDDTSNDGFEDFVLGNNDAQILLGQDPSVFVVSYYSSQADADAGNNPLSTTSYTNVASPETIFVRVENTSNTDCYETTSFDIIVNELPRISTAPDISLCDDPSGDGVESFDLTQNDVAVLNGLDPTEYTIEYSNASGVITSPYTNSGSPETITVTVQNNLTTCVNTTTFDIIVNPVPAIITPFTIEECDEDGNGSAAFTLGDLDNQILNGQSGTVITYHDSQADALSDVNPLDTALYENTSAMQTIFYRLEFSGSGCFSIGEFVIDSVGAPLAIVPTPLEACDDGNGNATVDVSQADAEVTAGQTGSTVVYYLNQSDADNEVNGITGDFDYSTNTTLIARVDDDNTDCFSFTTLDLIINPLPAPSLLDQYILCLDENGNLVNGPVTLDTGLNDTDFTFQWSRDGAPIAASTASIDVVEGGDYEVRATRNSTGCENTAITNVRVSSVPDVFDIDITTDPFNKDHQVIVTAEGPDQYWFRLDDGPYVNSGIFNDVSPGPHTVTIAERSGCGEIVVDIFVFGYPDYFTPNADGIHDTWNIIGGDLLPGTKLYIFDRYGKFIKQLSPDGIGWDGTYNGQPLPSSDYWFKIEYAFDGQQREATGHFAMKR
>NC_020156.1|WP_015362727.1|2308555_2309227_-|GTP-cyclohydrolase-I-FolE
MKIEDLLENIEDNDHLSSNEQTPLRPDAFDMSDADKIASIKKDVHNILETLGMDMTDDSLKGTPNRVAKMFVNEIFGGLRPDRKPSASTFENKYKYNEMLVEKDIVVYSTCEHHLLPIVGRAHVAYISNGSVVGLSKMNRIVDYYAKRPQVQERLNIQIVRELQQVMNTEDVACIIDAKHLCVNSRGIRDIESSTVTGEFGGKFKDPAVKREFLDYIKMDTKF
>NC_020156.1|WP_015362726.1|2306919_2308407_-|cysteine--tRNA-ligase
MALYQDNELRIYNSMNGEKEVFQSITEGRIGMYVCGPTVYSNVHLGNCRTFISFDMIFRYLKHLGYKVRYVRNITDAGHLTDDADQGEDKISKKARLEKIEPMEVVQQYTIDFHTVMKQFNAFPPSIEPTATGHIVEQIEIIKTIIDNGYAYEKNGSIYFDVVKFNEDHHYGKLSGRNLDDMMANSRELAAQSDKSNPADFALWKKASPEHIMRWPSPWGDGFPGWHLECTVMSSKYLGETFDIHGGGMDLKFPHHECEIAQGEAAHGHSPVNYWMHANMLTLNGQKMSKSTGNSILPVELFTGDNDFMQKAFSPSVVRFFMMQAHYRSILDFSNDAILAAEKGFNRLTEAMKLINQLPVSKTSTVDVAAWKAKCYAAMNDDFNTPILVAELFDTVKIIHTINDGNATITKEDLDDLSTSMDAFFYDILGLQIAQEETGGSLNKGLDGAMKLIIDLRATARANKDWSTSDKIRDELAAAGIALKDGVDGTSYSVE
>NC_020156.1|WP_015362725.1|2306151_2306502_-|hypothetical-protein
MKNYLLLFVALTLLSCGTSKSTVEKEVMFTGQEFDMDLFKGKWLTNGKKNKKEYSIFREDFQVENNKNQVFPYQLKKDSIFVYKNSKRYFGRLIKLNEKEVFILWGDQEAITYYRP
>NC_020156.1|WP_015362724.1|2305900_2306122_-|membrane-protein-insertion-efficiency-factor-YidD
MKKLLAYPFLLLIRFYQSVISPFTPASCRYSPTCSQYSKEALIKHGAFKGGWLALKRIFSCHPWGGKGYDPVP
>NC_020156.1|WP_015362723.1|2304033_2305509_-|sodium:solute-symporter
MTSTQILITIACYFAVLVAISFIVGRKSDNATFFRGNRSSPWFIVAFGMIGASLSGVTFISVPGAVEEGAMNYFQVVLGYIVGYLVIGTVLLPLYYKMNLTSIYSYLNDRYGSAAQFTGSSFFILSRMVGASFRLYLVAGVLQEFVFESMGVEFWQTVTFTVILIWLYTFKSGIKTIVWTDTLQTLFMLIAVSVAIYYISDSLNLNGIGEITGFISDSELSQIFFFDDWKAKEFFFKQFFAGAFIAIVMTGLDQDMMQKNLTCRSLGDAQKNMFWFTIVLTFVNLIFLGLGVLLTAFAKAEQLTATKDKLFAAIALDGNLGIGIGLVFILGLVAAAYSSADSALTSLTTSFSVDILRLEQNYEEKKQRWIRKLVHVGFSLTLILVIVSFEYLIKDASVINKLFVFAGYTYGPLLGLFSFGILTKLQVNHKITPVIAILSPFIAFGISSLASRYGFEFGFFILLLNGFVTFLGLLLAATFTNQNSNTDLYQA
>NC_020156.1|WP_015362722.1|2303696_2304059_+|CoA-binding-protein
MSKKTLVLGASLKEQRYSNIAIYRLRKFNIETVAIGLREGMVDDVKIHKELIPFQGINTVTLYLNPTRQEQYYDYIISLQPERVIFNPGTENPELYQLLSENNIESEVACTLVMLGTNQY
>NC_020156.1|WP_041567085.1|2302985_2303390_+|IS200/IS605-family-transposase
MSKNNLQIYLHIIFSTKSRNHFISDTIEKKLYPFIWSVIQDNDCVPITINGMPDHVHVLLKMDSKVSLSDLMRFIKGKSSRFLSENYTFLDGFEWQRGYGAFSVSPKNVDKVIGYIKNQKQHHREDSTIEELEL
>NC_020156.1|WP_015362720.1|2302672_2302909_+|hypothetical-protein
METKSFSLFGRKITKKYLWIITTVWLIGISLTVLAATDLFNQTMFQRKFVPVVLLSILSTVVVIYAHISYNSNSKKVN
>NC_020156.1|WP_015362731.1|2316926_2318405_+|proline--tRNA-ligase
MGKNLTSRSEDYSKWYNELVVHADLAENSAVRGCMVIKPYGYAIWEKMQAELDRMFKETGHQNAYFPLFVPKSLFEAEEKNAEGFAKECAVVTHYRLENDPDRPGKLRVDPNAKLEEELVVRPTSEAIIWNTYKGWIQSYRDLPLLINQWANVVRWEMRTRLFLRTAEFLWQEGHTAHATKKEALIEAEQMNNIYAEFAENFMAIPVIKGLKTESERFAGADETYCIEALMQDGKALQAGTSHFLGQNFAKAFDVKFTSKEGKQEYVWATSWGVSTRLMGALIMTHSDDQGLVLPPNLAPNQVVIVPIFKNEEQLDAITKVVDGIVSDLRALGVSVKFDSRDTLRPGAKFAQHELQGVPLRIAIGSRDLNNGTVELARRDTLSKETTSIEGIAGKVKDLLEEIQNSLHKKALDYRDGHITEVNSFEEFKEVLEDKGGFISAHWDGTTVTEDKIKELTKATIRCIPMDAVEEAGACVLTGKPSTKRVLFAKAY
>NC_020156.1|WP_015362732.1|2318599_2318854_+|30S-ribosomal-protein-S20
MANHKSALKRIRRNEAARVRNKYQHKTTRNAIKKLKETEDKSAADKLLVDIYSMIDKLAKKNVIHSNKAGNLKSKLTKHVNAMS
>NC_020156.1|WP_015362734.1|2319089_2319866_-|hypothetical-protein
MKKLLLISMALISAFTFAQEEDEKENELYEAPYDFLDAFDSSRRDKETVLTNTKLFVAFGFNQALGDGNGIGEDYRFWGSGIFDVGLEFSTRLNKEDDLFRLTYGLNLRTQTLRVNDNRVFETQNSVTNLVNAPFDLDRSRFTQFSFVAPLHIEIGRRDLKDYEDGIKRYGGDDPFVAGIGGYIGYVTMTSQEVKFDREGRDVTSTLTNDFVVNEFQYGLSAYAGWNNAQFFITYGLNNILDNSSLEQKHVSFGIRLR
>NC_020156.1|WP_015362735.1|2319991_2321038_-|secreted-protein
MKKLILTLSFIISFTSFVKVHAQSEIQQDSISINARIADLLEEKEQNIKDEKEALKYTIEAINEKLEKNKITKEKAEELKKTAAERTALNIKYYEQYAMLEEEYVRKNGKFSYEGGAMLEIGTKQFIRFRNRNKDREYQQYRNTEIGLTIAFAYNFMNGDNLDINDFSYANNNYFSIGFQWKTRLDKNNNFRAVYGVEYQSHGTELNGNRFITQGDQAQIASLGFNADKAKFRQDQLVFPLHLEIGGSERKEYEDGRVRFQDYDEWKFGIGGFVGFNMSSRLKLKYELDGREIKETRVNNFDNETFLYGLDAYVGKGDITVFGRMNLNNVFKSGSVDAQYVAFGIRIQ
>NC_020156.1|WP_015362736.1|2321115_2321889_-|hypothetical-protein
MKLNNIKNSFENRRIEPSANAWDQLESRLDQEEKKSKKPVLFWLGAIAAILILGVFIYPMLSSDIVIKEDLSNEVVIDQTKTEHITNENKETEILVAPTTNDPLKNTNSSLEALATNEENNNNSKATVKQKNKENIKIEDTGVTLPDSKKNTAISFADHPEKTFIEDSSIDPAITVEVVEASTKKLTAEEEMELLLNEAIKKVETKEYAVKDINIDQLVRETEWDIEADRRNRFNNYLYDQLGKLKKEAVATITGRK
>NC_020156.1|WP_015362737.1|2321878_2322448_-|RNA-polymerase-sigma-factor
MKVIQLYTNEKKLIEKATKDDRKAQKRLFEKHAPKMLSVCRQYISPVETAEEIMLNGFFKIFTKLHTYTHKGSFEGWVRKIMVRECIDHLRKKDPFKFKDEINEEKVGCGEDEQEEESELPLDLIQECIDALSDGYKSVFVMYAIDGFKHKEIAQALQISENTSKTQYRKARLQLQEQILRIRKQQYEA
>NC_020156.1|WP_015362738.1|2322517_2323654_-|glycosyl-hydrolase-53-family-protein
MKKKLIYLLILLLFISCDSQNEDEGNYDLVNNPSEGSLYRGMDLSFLPENESLGVVFKDENNQDINDNYAYLSSRGVNLVRVRLWENHLDQEYNLQNLKTQALKIKAAGMDLLLDFHYSDTWADPGRQNIPAAWQGLTIQELSVAVNTYTNQVINELKNQGTAPDIVQIGNETNNGLLWPLGKIYENGNEDFDNYVQITNAAISAVRSTLPEAQIMIHHAGVSNARYFFEQLNNRNVDFDTAGLSYYPWWHGSNVSTIETDLNSLAIEIEQKIMIVETAYPFTLNWNDNLNNIIGLNNQLAPNYSASFSGQKDFLMKLKSMLKGLPDNKGIGFCYWAPDWVAHDQGDQSFMNGSSWENLALFDFDHKTTPALEVFTED
>NC_020156.1|WP_015362739.1|2323695_2324121_-|hypothetical-protein
MLYNVSYNNKKIDREISEEVGAVLTLKERWKLKGSGSPKLFITSCSIQIHNLLILDNNANSCNVEIREKGIIVRFRSLLETFALPIPYYKLTIYKGRAQEYSIHKDNYFVKLKADHKRIHKFFDKLSQLKSDQGFEYIDDL
>NC_020156.1|WP_015362740.1|2324264_2326049_+|arginine--tRNA-ligase
MTLFQQLEIATKNAVTSIFSVTLENVEITLTRKDQNGDFTIMVFPMLRHIKGNPAVIGEKIGTYLKENTDLITDIEVIKGFLNVKVSSKAFLADFNLMLSDENYGTKGQDSSQPGVMVEYSSPNTNKPLHLGHVRNNLLGYSVANIIEATGRKVYKTQIINDRGIHICKSMLAWERYGNGETPATTGLKGDKLVGNYYVKFDQEYKKEIAQLIAEGKTEDEAKKQAPSLIAAQQMLQKWEQGDEEVVALWKKMNGWVYDGFDITYKNLGVNFDSLYYESNTYLLGKDVVQQGLDKGVFEKDPDGSVWIDLTEDGLDRKIVLRSDGTAVYMTQDIGTAIQRVKDHHINSMVYTVGNEQDYHFKVLFLILKKLGFDWAENLYHLSYGMVELPSGKMKSREGTVVDADELMEEMTATAKEIAQEQGKLEGLSDSEKENLYKMIGLGALKYFMLKVDPKKSMMFDPEESVDFQGNTGPFIQYTHARIKSILKKSGFDTNALKSAVNLDLTDKDIAVIKSLQQFPDVIQTAADKYSPALVANYVYELVKEFNSFYQNVPKIVEEENADLKQFRLLLCYKTAAVVKSACSLMGIEVPEQM
>NC_020156.1|WP_015362741.1|2326218_2326383_-|Lacal_2735-family-protein
MFGLFKKKTELEKLQEQYEKLMKDYHRLSTTDRAASDAAFAKADEIGKKMDALR

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Crispr_ID: NC_020156_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020156_4

2636822-2636905

Orphan

Consensus_repeat	Method
TTGGGGAAATGTAAGACCAGTACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020156_4

>merge|NC_020156|4|2636822-2636905|CRISPRCasFinder
TTGGGGAAATGTAAGACCAGTACTTAGCTTGCCGAAGTGGAGTTATTTAGGTTTTCCCCTTTGGGGAAATGTAAGACCTGTACT

>NC_020156|4|3|2636822-2636905|CRISPRCasFinder
TTGGGGAAATGTAAGACCAGTACT	TAGCTTGCCGAAGTGGAGTTATTTAGGTTTTCCCCT
TTGGGGAAATGTAAGACCTGTACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020156.1\|WP_015363033.1\|2630212_2631013_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363035.1\|2631797_2632424_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363039.1\|2634671_2634923_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363044.1\|2638927_2639683_-\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|239245
NC_020156.1\|WP_015363041.1\|2637007_2637172_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363046.1\|2640252_2641026_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_020156.1\|WP_146250795.1\|2643821_2644520_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363037.1\|2633209_2633875_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_020156.1\|WP_015363032.1\|2628652_2630119_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_020156.1\|WP_052329266.1\|2643364_2643535_-\|YqaE/Pmp3-family-membrane-protein	unknown	unknown	gnl\|CDD\|376592
NC_020156.1\|WP_015363036.1\|2632434_2633193_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_020156.1\|WP_015363038.1\|2633878_2634679_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NC_020156.1\|WP_015363043.1\|2638114_2638891_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NC_020156.1\|WP_015363031.1\|2626779_2628408_+\|acetyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|178415
NC_020156.1\|WP_015363049.1\|2642480_2643254_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_020156.1\|WP_015363042.1\|2637159_2637861_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_020156.1\|WP_015363034.1\|2631186_2631798_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363040.1\|2634982_2636656_+\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NC_020156.1\|WP_015363047.1\|2641027_2641807_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130381
NC_020156.1\|WP_015363048.1\|2641857_2642457_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020156.1\|WP_015363044.1\|2638927_2639683_-\|thiol-reductase-thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.57966e-22
NC_020156.1\|WP_015363037.1\|2633209_2633875_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.24527e-45
NC_020156.1\|WP_015363046.1\|2640252_2641026_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.90373e-144
NC_020156.1\|WP_015363032.1\|2628652_2630119_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	7.28018e-08
NC_020156.1\|WP_052329266.1\|2643364_2643535_-\|YqaE/Pmp3-family-membrane-protein	gnl\|CDD\|376592	pfam01679, Pmp3, Proteolipid membrane potential modulator. Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants.	6.81412e-11
NC_020156.1\|WP_015363036.1\|2632434_2633193_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.10056e-20
NC_020156.1\|WP_015363038.1\|2633878_2634679_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.64646e-12
NC_020156.1\|WP_015363043.1\|2638114_2638891_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.79934e-13
NC_020156.1\|WP_015363031.1\|2626779_2628408_+\|acetyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_020156.1\|WP_015363049.1\|2642480_2643254_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.4187e-26
NC_020156.1\|WP_015363042.1\|2637159_2637861_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.35782e-118
NC_020156.1\|WP_015363040.1\|2634982_2636656_+\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	5.66945e-09
NC_020156.1\|WP_015363047.1\|2641027_2641807_+\|hypothetical-protein	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0.00858599

>NC_020156.1|WP_015363040.1|2634982_2636656_+|DUF3352-domain-containing-protein
MSAHMIKRDDYAFLYVVDMEKLSRFEFIKSNINQLVNKNFDVTKRIYNEVEITEITDKSTYEILSLAFIENQMVASYTHTLVEKSIDEFLSPVIGRDLQFLEIQREVKQQDLFRFYLNHKYLTDYYKAFSNENSAIVELFEEHFNFSGFHIDVDSDRLLNANGYSNGDQTAQSLITALNDSGTSKVTVSEILPQETVLFLSFGFDEFSELHGNFYDLLESQNPSLFNEYKQGRKKIEDLVEIDLERDFYSWMDDELAFAKADSKNISEKEGIAVILKAKNADDAIERLKFVEQQIAENTPVKFKEVDYRGYKINYLDLKGFFKLIAGSLFDAIEKPYYTVIDDFVVFSNSPKTLKLFIDAQETEKTLVEDEYYNYFKDEFSSESNVFLYVDTNKLIDASAKYLTSSSREELELNKTFFSQFTQIGLELTAQESVFESKAMIHYDKDYDHEALQQEERTKDLPLDFVTIRKEEISKETVFDIPPIFPDDFTANFYEQKYTNGKIKMKVYLKDGIPDGRYKEYYFDGQLKISGRFDEGEKDGKWKAYLRNGKLYHKERF
>NC_020156.1|WP_015363039.1|2634671_2634923_+|hypothetical-protein
MIRKKYLYFALLIVMVVLIYKVIAFFTLQEDRINATYLIPQDAVFFIEMDDPLRNMNTLAESEIWDHLQTNETIHKMSANSMR
>NC_020156.1|WP_015363038.1|2633878_2634679_+|alpha/beta-fold-hydrolase
MLLKKLLKTILIIAIGGYLVICGLLYFYQESLLFFPEKLEKDFQFEFKHKFVERDIVTSTGHSINTLLFPQENAKGVILYLHGNGGSLKSVGNVSEHFLPLGYDVFMVDYAGYGKSSDEITQQEEWFEDMQFIYDDLKNSYSEDEIVIIGYSIGTGVASYLASQNNPAQLILHAPYYSMTDMMQRNYPIIPTFILRYELATNEYLKKVNAPVYLFHGDKDKVIPVESSVMLSEEFNLPFTKLENQGHGNMAANRTALAQLNAILND
>NC_020156.1|WP_015363037.1|2633209_2633875_+|response-regulator-transcription-factor
MGKKISLGIIDDHDIVRKGIKELLHNMGDFEVIEEHANGVAFLNNMPEKSKLPDLYLLDYSMPMMNGIEVLKEVKKIAPDAKFLLLTQHLDDPLKVNAYDNGARGFLNKTCTAQQLDSSIKNVVRTGYDNFDEILKLLRNKNSLKELNDKQQYDLTDRELQLLELVCHENEYTYQQIADQMNLSIKSVDACRAQLFQKIGVKSKVGLVLYSFHHKLTQPFN
>NC_020156.1|WP_015363036.1|2632434_2633193_+|sensor-histidine-kinase
MTNIAIGIIITFLFVCMAILFCAILIKVYVAKIKKYNQLLFEKQLEQQKAVSRAVLETQEETLNNIALDLHDDAGQRLTYLNLQLEQLKLKQPEMNSTIAPISKTVNDLAINLRDLSHSVTSNSLVNSSLFSVFEKELLRINKLGVVTCHLEIIEKKAFSFTLEEKIIHYRIFQEVINNMLKHSRATTFTINVIQPDRPIFKYLDNGQGFNSSQEMNSNGLHNLQLRCELIDYNCDISSVINEGSTIQISKK
>NC_020156.1|WP_015363035.1|2631797_2632424_+|hypothetical-protein
MIQKITFTTILVVATFIVATIFLRRGKLYLYLYGIIALNFLSEILAFIATVTQKFSFVSVYNLNFIFQPLLWLLLLGYILKSRKKAKILAISFLTFGLLNISFYEQMDLNENTLLLGSFLYLGFFIWGHFKLIKDEVLNYFNSNRFILVSAPIILFFGISILFAFGDSGLRSTPMLGKSLYYYIQFISNFIFYSLLILYIIKSRNEEK
>NC_020156.1|WP_015363034.1|2631186_2631798_+|hypothetical-protein
MPHVYHTEPVVLDGITVNSVEVTSDTGSESLKTDIGHLSDQQQIQFLNECNLHNMHLRNTRKGHSLITHEHNYYEVETVLKEISISELVDSRPFSYGTWVKFDFNGNTIKFDPVEFTGKEKFNVHELLDDNICYYSIPFLFAIKNYFGSQCSLEFKVLPNHSLSFKVINTEKQDERLGLIYNFSYDPPNGNLLLIGNGNTVVQ
>NC_020156.1|WP_015363033.1|2630212_2631013_-|hypothetical-protein
MKTKIILFLLLFNGLLISAQEIKAGNNFYFTRNLDKQLIPKKVKILNGTMPSNFEIIKKSRITVLHKDEDYTYFSYWNYTATSDMHATYNEDSSGNTRIFKIKNERFKNLTSTYYNKFRGFKFGTYSVPIRLRNSDGVFEFDSNLSLGASLVARFSLSRYNQYSYIDISGGISITKVNLNPENSNLGSIGDFETVEALSPAAITPTIGILVGIAKNVNLGTYVGWDHISTADNKAKWIYDRKPWVGIGLNIAFTGNASQSDSKSGK
>NC_020156.1|WP_015363032.1|2628652_2630119_-|T9SS-type-A-sorting-domain-containing-protein
MKTTILTWTSAAILLFNVIVLQAQVQLGNTISSMENSVNQFGRQIELSDDGLSVAISGPGINNFTGLVRIYDFDQTSSSWIKRGNDILGQVNGGAFGSSIGFSGDGMVIIIGSENSGRTEVFEWDAVMNNWTQKGSSFIGNNANNLADTAISGDGNRIAVAASNNFPVSTGSVRIFEWDNVMNDWNQVGQLLQGNQSGDRFGDAMSFSDDGNTIAIGAYLDQSNVGSVKIFSWNNLANTWDQRGNDLVGESFIYYFGDDLDLSSDGSTIIIAARSANHSVTNLKHGHAKVYQWAATNQQYIQKGQTIEGDNDGDRFGQQVAISGDGQIVVVSADVADTNGFTQVGYVKIFQFQNNSWTELVKMDPSIIQSNLFFGSGIDISSNGRNISIGREFRNPFVENYDITSILSNSSLLFENIKLYPNPTHSNLFIESQEELQSMEFFDLSGKRLFSSKYHVDKINLERFSQGIYLIKLTSIDGDVLTRKVIKN
>NC_020156.1|WP_015363031.1|2626779_2628408_+|acetyl-CoA-carboxylase-subunit-beta
MDLDFNKNEDHNKMLLSDLKRKLAKVSLGGGKKRIEKHHAKGKLTARERIDYLLDNAEDAIEIGAFAGEGMYEEHGGCPSGGVVVKIGYVQGRQVIVVANDATVKAGAWFPITGKKNLRAQEISIENRLPIIYLVDSAGVYLPMQDEIFPDKEHFGRIFRNNAVMSSMGITQIAAVMGSCVAGGAYLPIMSDEALIVDKTGSIFLAGSYLVKAAIGESIDNETLGGATTHCEISGVTDYKAKDDKDALDKIKKIFDKIGDSDKAGFNRVEAKKPALDPDELFGALPRERNAQYDMMELINRMVDEDTFEAYKDGYGQTIITGYARMDGWAVGIVANQRKIVKTKKGEMQFGGVIYSDSADKATRFIANCNQKKIPLVFLQDVTGFMVGSKSEHGGIIKDGAKMVNAVSNSVVPKFTVVIGNSYGAGNYAMCGKAYDPRLIFAWPSAELAVMSGNSAAKVLMQIEKASLEKSGKKLTEEEEKELFAKTKDRYDEQVSPYYAASRIWTDAIIDPRDTRKWISMGIEAANHAPITKDFNLGVIQT
>NC_020156.1|WP_015363041.1|2637007_2637172_-|hypothetical-protein
METLSDYKDWIYIGGVLLAFVVFLFWNRSKQGSIKDRKRRNFKQRIQEKREERK
>NC_020156.1|WP_015363042.1|2637159_2637861_-|ABC-transporter-ATP-binding-protein
MSENVIEVRNIIRDFKLGSETVHVLKGIDLDIKKGDYIAFMGPSGSGKSTLMNLLGCLDTPTAGSYKLNGTDVSSLSDDQLAEIRNTEIGFVFQTFNLLPRTTALDNVALPMIYAGKSKKDRKARAEEVLTSVGLADRMDHQPNQLSGGQRQRVAVGRALVNNPSIILADEPTGNLDSKTGVEIMALFDKIHADGNTVILVTHEEEIAEHAHRVIRLRDGIIETDTRNRPWKP
>NC_020156.1|WP_015363043.1|2638114_2638891_-|class-I-SAM-dependent-methyltransferase
MFHLVFAYFSHLIKSFHLHGIHSPFIFQLEKKCLRDDSVKESYELLSRFRESVAASNVILKIEDHGAGSKVFKTNERKVNEILRHNCSTEKDTRLLYRLCAYFEVNHVLELGTSLGVATHAMAVSRPQAQITSVEGSPEVYEFARRQLQENSIQNVALICSTFKDFLSQHKEEKDYDLIYIDGHHDGDATITYFESILAHVHNDSVVVFDDIYWSTDMTRVWNEICKHSKVTASVDCFDFGLVFFRKEQSQERFYVKL
>NC_020156.1|WP_015363044.1|2638927_2639683_-|thiol-reductase-thioredoxin
MRILFIITFSLLLSSTITAQEYVTDATMEETVMVQDDQIKVLYFTAPWCGPCRAMAPTIESIANDETLDVTIYKMNTDDNLSDDILQVNSIPTYFFIKNGRKLGQSGSTMRRAEMVKLIERHDKMTVSGDLLAYKGKPSKYEIAEGAHEKLTKKNLETLWYGSHQLNELAWKIYQNLEDQTDLKCALVLINRSIELETYVSNLETKAHLLHKLGDLKQALKTAKKAKKLASQEGESTAIIEQLMEQIKADS
>NC_020156.1|WP_015363046.1|2640252_2641026_+|nucleoside-triphosphate-pyrophosphohydrolase
MNNRKEQLAAIDRLLTIMDELREQCPWDRKQTLESLRHLTIEETYELGDAILDKDMEEIPKELGDLLLHIVFYAKIGSETGDFDIASVANGICDKLISRHPHIYGDVKVKDEEEVKANWEALKLKEGKKSVLEGVPKSLPALVKSSRIQDKVAGVGFDWEKPEQVKEKLEEELAELQVEVDSGDKDKIEAEFGDVLFSLVNYGKHLGVNPEDALERTNKKFIKRFQYLESKAKEIGKELRDMTLSEMDVFWEEAKKV
>NC_020156.1|WP_015363047.1|2641027_2641807_+|hypothetical-protein
MSKVNDKSLKQKILSFLEIKEGLIKSISGRSYLDYAVNVFYVLALIIPAFIYGFEIVESHYVELGFGIYFSSIILWILFRKYILFDDEIEMDSIESGTYEDLSFTEEKLPYIRILSFIGAFIIIGLAVFIISHESYEFETLHIFFYLIAAKWCLYLFINAYYKVTTDTKIFKIESDRLRISYDKAEKYVLLKELKQIKIAGTHLSFFPMEGKIEMLNDFELDEKEQLQIKGFLNEHMPEISVSIYETRLEIFKDNKQEN
>NC_020156.1|WP_015363048.1|2641857_2642457_+|hypothetical-protein
MLFTITLVILYIVVRNLDFFKEHKEVCFSIVIIAYFIYHIFIKWNNTESINIDLPGNKKQFNIFNYFIVIVGIYSIFNDDLNNSIPSWSFKNFLVYLIIALLISIFLYLYVDDSFEKRVVIIKNDRLYFQESTATYAAPIKEFQKIKISYNKISAIAKDGRRDRLGGYKMTDGDILNLIAFLREHTPDIELDVRYEKID
>NC_020156.1|WP_015363049.1|2642480_2643254_-|class-I-SAM-dependent-methyltransferase
MVKGKSAGYEVGDLIYDASIYDAMNSSLDDLEFYRKWMPKKENSHILELCCGTGRLTIPLAEDGYHITGVDFTSTMLAEGSNKAKQKDLKIKFINADVRSLSLQEKFDLIFIPFNSIHHLYKNEDLISTFQVVQKHLKKGGLFLLDCYNPNLNYIVEAQKDQSVLTQYQTDDGRTIRIEQNMNYESASQINRIQWHYFIDGQFDSIQNLDMRMYFPQELDYYLEQNGFAIDQKFGDFKESNFNNESEKQIYVCRKKI
>NC_020156.1|WP_052329266.1|2643364_2643535_-|YqaE/Pmp3-family-membrane-protein
MKKLTIFLNILAPPISVFRKRGFDNDLAINILFTMMLFIPGIIHAFYITSQKNGIL
>NC_020156.1|WP_146250795.1|2643821_2644520_+|hypothetical-protein
MKRILLIFLIVSAMYTQAQIVITPNPVDINSGLVTITYGSNNDYTIFDPMSNPNLLLYTGFDTDADPTTWDYHDDFNDTSTFIPFNFDATANAYVAQIDVAGRMYQEEPNLNMVNLPQGITVNDWYFIIITTDLSRQSADLKGSDYGWQPATLSNNTFEKEEFKVTAVSDKLFFNTADYYSVKTYNLQGQLVQDINRRYVENQIDMSLLPENQLYISKITSALGTLTIKHIH

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Crispr_ID: NC_020156_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020156_5

2757867-2757976

Orphan

Consensus_repeat	Method
AATATCAGTTCGAGCGCAGTCGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020156_5

>merge|NC_020156|5|2757867-2757976|CRISPRCasFinder
AATATCAGTTCGAGCGCAGTCGAGAACGTTTTGACATCGAGAACTGGTAATCTGTCTCGGCTGCGCTCGACATGACAACGAGAGCAATGTCAGTTCGAGCGCAGTCGAGA

>NC_020156|5|4|2757867-2757976|CRISPRCasFinder
AATATCAGTTCGAGCGCAGTCGAGA	ACGTTTTGACATCGAGAACTGGTAATCTGTCTCGGCTGCGCTCGACATGACAACGAGAGC
AATGTCAGTTCGAGCGCAGTCGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020156.1\|WP_015363168.1\|2759101_2759254_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363158.1\|2746937_2748281_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_020156.1\|WP_146250792.1\|2756845_2757283_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363163.1\|2753387_2756609_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|380294
NC_020156.1\|WP_015363176.1\|2769894_2770734_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363159.1\|2748270_2749614_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_020156.1\|WP_041567441.1\|2744568_2745270_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_020156.1\|WP_015363154.1\|2741972_2744369_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_020156.1\|WP_015363157.1\|2745475_2746729_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_020156.1\|WP_015363170.1\|2759943_2760300_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363162.1\|2752524_2753226_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363165.1\|2757502_2757856_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198403
NC_020156.1\|WP_146250791.1\|2763842_2765117_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363175.1\|2767647_2769864_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_020156.1\|WP_015363174.1\|2765306_2767409_+\|MORN-motif-containing-protein	unknown	unknown	gnl\|CDD\|215619
NC_020156.1\|WP_015363167.1\|2758712_2759105_+\|Sec-C-motif-domain-protein	unknown	unknown	gnl\|CDD\|380015
NC_020156.1\|WP_015363166.1\|2758094_2758646_+\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NC_020156.1\|WP_041567134.1\|2750511_2752101_-\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NC_020156.1\|WP_015363169.1\|2759467_2759890_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363171.1\|2760424_2763670_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|143478

Protein	Function_ID	Function_description	E-value
NC_020156.1\|WP_015363166.1\|2758094_2758646_+\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	2.67797e-32
NC_020156.1\|WP_015363163.1\|2753387_2756609_+\|N-6-DNA-methylase	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	6.20527e-27
NC_020156.1\|WP_015363159.1\|2748270_2749614_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.14235e-29
NC_020156.1\|WP_041567441.1\|2744568_2745270_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.05721e-115
NC_020156.1\|WP_015363154.1\|2741972_2744369_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	6.5748e-56
NC_020156.1\|WP_015363157.1\|2745475_2746729_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.0802e-24
NC_020156.1\|WP_015363174.1\|2765306_2767409_+\|MORN-motif-containing-protein	gnl\|CDD\|215619	PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional.	3.09441e-13
NC_020156.1\|WP_041567134.1\|2750511_2752101_-\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0
NC_020156.1\|WP_015363158.1\|2746937_2748281_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.63692e-151
NC_020156.1\|WP_015363165.1\|2757502_2757856_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	1.1838e-27
NC_020156.1\|WP_015363175.1\|2767647_2769864_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.92809e-54
NC_020156.1\|WP_015363167.1\|2758712_2759105_+\|Sec-C-motif-domain-protein	gnl\|CDD\|380015	pfam17775, UPF0225, UPF0225 domain. This entry represents an NTF2-like domain found in bacterial proteins.	7.55732e-41
NC_020156.1\|WP_015363171.1\|2760424_2763670_+\|S41-family-peptidase	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	6.21858e-58

>NC_020156.1|WP_015363165.1|2757502_2757856_+|GIY-YIG-nuclease-family-protein
MKYYHLYILECADGKLYTGMTNNLKRRLQEHDSGYNPRSFTFKRRPLKLIYSERFEDVRQCIYFEKKIKKWSAAKKKSLANNDFDMLQILSECRNMTHHKFQPTEEEIRIALDKMDA
>NC_020156.1|WP_146250792.1|2756845_2757283_+|hypothetical-protein
MDFNEMIIKRFFTKPDLSPLQDDEGKDFHYALVGNIIGKHFLGVEKKIVYGTKHFSTNTKVILLPEYGGMGHESIPVYGKLRNSSRKIKIVLDSSYLKNVRVKAIYNSKVMKMISISHFYKHFENSKPRLQGFAQSGFDGEREIE
>NC_020156.1|WP_015363163.1|2753387_2756609_+|N-6-DNA-methylase
MSIFQPSVLKSHIALLDHKAVDKAYKQFANYFLDLKIQENIKVAKEEQYQATFLNELFVKTFGYTLFPDKNHNLVTEQKNEGNSRKADGAILKGDAVTAVIELKGTKTKDLESIRKQAFDYKNFNTGCNYVITSNFEKLRFYIDDASNFEEFDLFSLSRKRFELLYLCINKEQLLQHTPKSIKEESLVEEEKITKSFYKDYSLFKRELWKDLAKNNVKSLKQLAAQHRSVEKELADGPATEADDELNRLEKNVKRTLFKKSQKLIDRFLFIFFAEDRGLLQPNYTLKSIEEWETVRKLGVEESLYDRFKKHFTYLDQGRKKGDGVSEIFAYNGGLFKPDTILDHIVISDELLLKHTKKIAAYDFESQVDVNILGHIFENSLNEIESVNAEIDGADFDKQTSKRKKDGVFYTPKYITKYIVDNTVGKLCEEKKAELGFAESEYYRGRKNRNKSTLENLVKILDDYREWLLQLTICDPACGSGAFLNQALDFLITEHNYIDELKSKLLGGSIALSDIENTILENNIYGVDLNEESVEIAKLSLWLRTAQPRRKLNDLSSNIKCGNSLIDVKAVAGDKAFKWEEEFPQVFAKGGFDVVIGNPPYVPAEYIAVEEKSFLEKKYQSAYGRLNLYPIFYEKAINLMRTNGLLGYITPYTILKNRYYKEARKFILNETQIHTLIDFKGILVFKDAAVDSIVFILEKSKNDYNAFEQISDVVDFELDLFTKMTVPIKEIINSPDLSLIISPFEKIIKRISKDTIPMKDVINFNQGIITGGNKKYLTYEKSELTMPVITGSDFNRYSLNYNGLKIIYDVKLLHRPRKKEIFEVPERIILRQTSAYPICTIETNKYYTLDTVHNGLLIDKNFDLKYILSLLNSSLIRFLYEKSINEDGKVFAQVKIMYIDPLPVKRIDINDQLMYVKLVDSVLATTPILNIKSQSFLSFIMNQFQLKKLSKKLQNWHELDFGDFIKELNKAIKAENRRRKKEASVSSSAVENESASRTKNSLDCARLDKENDFQEIPTLTKKDEFEWMELFEEKKKEVQELQSQINQTEKEIDQMVYELYGLSDEEIAIVEGS
>NC_020156.1|WP_015363162.1|2752524_2753226_+|hypothetical-protein
MKTTNQPLQRSDYRIRLLIGTLGILLPVALIIAKGSVLASISHYYYHNVASLIFIIILSAFGLFLLSYKGYRIDPKTEIISDDFITNIGGLAALLVVIIPTSCDGSGSAVIDGLCGNGLEPLLGHLNNTKNIIHLVAAGVFILTMGWMSSFKFTRGDDDGYHSLYRWSGYLVFISVGLLLICKLLVALDVNIFIQDYYVFIFETTAIIPFGISWLIKGKMVEKVQVISKKMFN
>NC_020156.1|WP_041567134.1|2750511_2752101_-|YdiU-family-protein
MHKLHINNSFTNALPEDPIKENFTRQVTGVAYSQATPLTFRKASLIHVSELAKELGFDQEEIASAEFLQLFTGQVLYPKTQSYAMAYAGHQFGNWAGQLGDGRAINLFEIVENNNRWAFQLKGAGPTPYSRRGDGLAVLRSSIREHLCSEAMHHLGIPTTRSLSLSLSGEEVLRDMMYNGNAAHEKGAIVCRVAPSFIRFGNFELAAAQGEKELLKKLTDYTISTFYKNITTSGKEAYIQFFQEVTDRTLEMIMHWQRVGFVHGVMNTDNMSILGLTIDYGPYGWLEPYDHGWTPNTTDRQNKRYRYGAQPEIGLWNLLQLANALFPLIEDAAPLQEILDSYRTNYQVQYLETMMNKLGIYHTHKDDRDLIQQLEEILHLHETDMTIFYRELSKINSKTDKIDAFEVISIAFYHLDQLSDAHRKEWLDWLESYILRLELDVKMEAGDIITFAKARIQKMNATNPKYVLRNYIAQLVIDDADKGDYSLLNEIYTMLQKPYDEQPEFEKWYALRPEWARSKVGCSMLSCSS
>NC_020156.1|WP_015363159.1|2748270_2749614_+|HAMP-domain-containing-histidine-kinase
MTYKSYVFSLTWRVFLLIASVTFLAFWISWSELYLIVGASFVTILVIINLYKFVLKRFIEMDDFFESVKYRDFSRWFVETKGSQDIRELHKGFNLVNSTIKSINRERQAQFVYLQKILEMVDVGIIAYNVEDGSVLWTNDSLLQTLDLPSFKNISFIESRRPEVYQELFETYHTQADSITLKMRQEETKILISDTIFEIEESSFKLIVLQNIEETLNKNESEAWKKLLSVMTHEIMNSIAPISSLAETLETNLKSSIEQPQENNLDSEDILAGISSIRKRSEGLMQFAKTYRSLNKVTQINRLPVQIDELFESIEQLLQPTILEKNVTLEFKVTEPNLIIKMDNYLIEQVLINLIINAIEAAEEKENPTVIVTAGKTFKGNFQITVQDNGTGITQEVLENVFVPFFSTKKRGSGVGLSLSKQIMNLHQGKIQLRNINEGGTEARLIF
>NC_020156.1|WP_015363158.1|2746937_2748281_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MQLKNAQILIIDDDEDVLIALKLLLKSKVKEVVTNKNPNNIERLMETQKFDAVILDMNFNGLVNTGNEGIFWLNKVKSKHPDVDVILITAYADIDLAIRSLKKGATDFMVKPWKNDKMVQTLTEILKKVSASKTNRVELATKTEMVGESDAINDVLIKIKKVAPTEANILILGENGTGKELVAQSIHENSNRKDQPFVKVDIGSLTTSLFESELFGYKKGAFTDAKSDHIGRFEAAQGGTLFLDEIGNITLQQQSRLLSVLQNRKVIPLGSNVPVPIDIRLICATNLTMSQLADESRFRKDLVYRINTVDIVVPPLRDRGNDITVLAHHFADYYAGKYGKDQMKFSPEFLHKIKNHPFPGNIRELQHALERAVIMADESYLKATDLAFPEIEQSEITSHQKPTNLEDLEKNTILTVIENNNGNISKSAKELGLTRTALYRRLNKYDL
>NC_020156.1|WP_015363157.1|2745475_2746729_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MDIPLEKKRFTTKKILVAAGIVALAALIVFVLLSSTGASKLNVNKERISINAVQKGVFQENIPVNGIVLPITTIYLDALEGGRVEEKFVEDGAVMKKGDPILRLSNTDLELSLVNQETQVYNLLTQMQISQNAASQNTIMKLNNFTDVENSLIEAKRVYDLNKTLFEKDVIARQEFIQSENAYNYQKQRMNLSREILKEDSLAVKQEGNQITSSYARTQNALQLMRRKVADLVVRAPVDGQLTSLDAEIGQSKNKGERLGQIDVLSGFKVRAEIDEHYISRIYTGQTGSFPFNGENYQLEIKKVFTQVTNGRFQVDMVFNQEIPEEIRRGQSLQIRLALSQEKQALLIPKGGFFQVTGGNWIYKISDDGSTAYKAEIRLGSQNTEFYEVLSGLQPGDKVLTSSYDNYGDVEELVLKE
>NC_020156.1|WP_041567441.1|2744568_2745270_-|ABC-transporter-ATP-binding-protein
MITITDLEKYYVTEEVRTVALNKLSFSVQEGEFVAIMGPSGCGKSTLLNILGLLDDPDGGSFVFNDIEVSGFNERKRADLRKHNIGFVFQSFNLIDELTVFENVELPLIYTGVKPAERKKRVDEVLEKMQIMHRRKHFPQQLSGGQQQRVAVARAVVNNPKLILADEPTGNLDSSNGNEVMDLLTELNAAGTTIVMVTHSEHDAKYSHRIIRMLDGQKVTENILADYKSGVQV
>NC_020156.1|WP_015363154.1|2741972_2744369_-|ABC-transporter-permease
MFKNYIKIAWRNLVKNKVYSFINVFGLALGMAVTVLIGLWIIDELSRNDSFANKSKIASIYQSQTFNGEIFTGAAIPLPLEFEMKEKHSDIFEHIVMSSWNSDQIFKYGDKNLSIEGYHSSKDILDMLDLNIIQGDPNGLDDLKSIMLSQKSAQAIFGNENPIGKIINLNNSTDLKVTGVFENVPNRSSFGDMHYLIPWEFYKTSREWIVDNADNWDNNSFQMFVQLKDGVTMDQADALVRDTKKKAQPENTHNPTLHVNAMADWDLRDNYVNGIKSGGRIENVWLFGIIGIFVLILACINFMNLSTARSEKRSLEVGIRKSIGSTRGQLINQFLSESLLVVIISYVVSIAIVFFSLGYFNDLASKNISFPYDQLYFWIISIVFIIITALISGSYPALYLSSFKPIKVLKGTFKIGKLAALPRKILVVTQFTVSIALIIGTLVVMNQIDYTKSRPTGYNNNGIIQIPIFSNAFEGRYEFTREQFLNSGAVIDFASSSSPVTEVWSNTAGYDWDGKPEGFQEDLALTSVSYDYMKTMQMEIIAGRDFSRSFHTDSNAVILNETAVKYMNIKDPIGKYITDSADREAEPPMKIIGVVKDAIVQSPYEPVKQHIYPFDNFENSSYYNLRLNPDHTISENLSTIEQVFKTNYPDVPFEYEFIDENFAQKFRSEERVASLAKVFTILAVIISCLGLFGLASYVAEQRTKEIGVRKVLGASITNLWLLLSKDFLILVLISILVAAPLAYYFMGNWVQKFTYRTEIGLSVFIIAGIGAIVLTIVTVSFQAIKAARVNPVKSLKTG
>NC_020156.1|WP_015363166.1|2758094_2758646_+|DUF427-domain-containing-protein
MNINKDRLQKARDGWSNRGNKRPPFAIEPEEGQRSVWDFPRPPVIEKVTQPVLVQYQGDTIVDTQNALAVLETASPPTYYIPREDVNLEILVELQGKSSFCEWKGKADYFAIKENQNRPVAWSYANPLQEFADLKDYLAFYPQHLECFVDGNRVKPQPGEFYAGWITPDLTGPFKGESGTGHW
>NC_020156.1|WP_015363167.1|2758712_2759105_+|Sec-C-motif-domain-protein
MKNCPCNPKKEYKDCCAIIHKDISQATTAEQMMRSRYSAFVLSDVAYLQRSHLSSLRPNKQQAKDLEKWTKSVNWIKLNVINTTDGLENDTTGTVEFKAFYLQKGKVQVLHEVSRFCKENDHWVYQDQIG
>NC_020156.1|WP_015363168.1|2759101_2759254_-|hypothetical-protein
MAKKGSEKNTKNKGKHSKLMDRVKNKKRAEKELRAQRLKAIVQAAKENNS
>NC_020156.1|WP_015363169.1|2759467_2759890_+|hypothetical-protein
MKYLQRLGFVMVSLLLLSSFTTAQEKLVGKWKGQDKGDIGYLILTEDGYATFQLEDQVFGGKSFEMRGVTSKMTYEIDRSQYPNAIDFIITNTDNNKELGRMYGIIQMLSEDELQMAMNFETKERPADFSKDQIVFERMK
>NC_020156.1|WP_015363170.1|2759943_2760300_+|hypothetical-protein
MTVQDLVGEFAINGQNQDATQQPYQGKLKLQLDQYQRIIAHWQIGDDQIQHGTGFYKDQILVINFNYSNERHQVFKGVVVYKCITKDVLDGFWSEKHGDPRFLGTEQAFRISSKELLH
>NC_020156.1|WP_015363171.1|2760424_2763670_+|S41-family-peptidase
MKLFYTWALLLTAISLHAQQDAGWLRHNTISPDGSQIVFTYKGDLYKVAASGGNAQQLTFHEAHDYQAVWSKDGKQLAFASNRYGNFDVYVMNANGGPATRLTYHSANEQPFSFSHDNESVLFGAARMDDVKHRQFPTGSQPEVYQVPVTGGRVDQLFTIPAEYLNVSKDGKTILYHDKKGGENIWRKHHESSITRDIWSYDVVNNTHKMITTYAGEDRMPVMSGDEQSFYFLSERSGTFNIHKSGLNGTNVSQLTSFDLHPVRFLSAGNGTLCFSYDGKLYTMKEGQEPVKLQVNITTQPISNSDKFISINGGVSEMEVSPNGKEIAFIARGEVFVTSIEESFTKRITNTPEAERFVTWGPEGKSVVYSSERDGKWSVYKTEKVREEEPFFFASTLIKETAVLENGKDNYLATYSPDGKKLAFIEDRRTLKIKDVKSGDEITLMTPKELFHMRDGDKDFTWSPDSKWLLMGWDLSLSNTEVLLLAADGSKKMNLNESGYYDYSPQWVNGGKQMIWFSNRDGLKSYATSGSSQSDVYSMFFTQDAWDEFNLSKEEFALQKEIKKLADEAKKKAAEKDDKKKKKKKKDDEDKKKDSLEVKFDWDEMKDRTKRFTIHSSSLSDAVLNKDGSKLYYLTRFEDKLNLWETDLRTKETKMAIKLNASSGSLQWDKEMKNLFLLSNGSISKIDTDKNKKEGIKIAGEMEYDAVAERQAMFNHVWIRTNAIFYHPDFHGIDWNMMKKEYEKHLPYIGNSNEFTEMLSEMLGELNVSHAGAGGARMKMSNPDATASLGIFMDYNHIDDGIKITEVIKGGPLDKADFDVKAGMTILKIDGETISSNRDIASYLNRKNDKFTLLEINDPETKKSMTITVKPISLGEERGLLYKRWVKKNEEEVTEKSNGQLGYVHIPGMGDGPYRDIYEKMMGKFYDRKGMIVDTRFNGGGDLVADLAMFFTGTPFITYATEDKVVGGEPTSRWVKPTLAMINEAQYSDGHCFACGYTDLKIGKTVGMPTPGTCSFAGWEGLPDGSYWGVVPVSAKDINGKWMENSQTEPLIKVKNMPGKIDQGIDQQLERSIIELLKDVE
>NC_020156.1|WP_146250791.1|2763842_2765117_-|hypothetical-protein
MKTSLIILSFLILICDKGYSQIGVNTDNPLTTLDVRGTNDLGAVAATDGILVPRVNSLAVAGTENGQLVFLNTASGGDSIGFHYWSTAASDWLPIDTTVEPWNEANTTDPATSNSQNIYTSGLVGIGTDDPLGALHITTENSRDVLFFRFIDSATDDLDIDLFRTRGTLATPAINTDGTRLGGLRAQSITVPAAYTFRPAAEIYFQSDGDSGSTSSAGKIVLATTPTGTTGTVDRMVIREDGNVGINQPDPEATLDVNGSFKFTDTNQTNGAILTSDANGIATWTPPIDRVYGMAYVSTTYGNVTNGSALELTVSGPISNMTKTTNGLEIDTTGTYKINYSVSIQRDGGGTQEVDFYLRYNGVEIPGSRIYTDTDQYTDQMSNSNTIFYEVTTANATLEIVSLDTNTNVSILNGTSLTVEKVNN
>NC_020156.1|WP_015363174.1|2765306_2767409_+|MORN-motif-containing-protein
MKLLPVKPILAICLFLIFTPNLIAQKVDFVNAPRNPIGFKAHKKHFNLEGDIFTSAGKLFLPDGKLVYNYGTRYYYENDRIVGNNYEDTFEYDAKGNIIKFKYKNGSTTTYGFNEKDLLVYEKNTYDEEKTHTYDSKDRIISTTVNKNGVFYQKREFAYKTDNGLLIIDLQYTDENGSPGFKGSYVYKNGYLVKEIISSGTYEYAYEFDKKGNKIDFFAAGDPDAKHYTTYNRYYSDKNKNYKLEYGYYQPGGKGDKLKTAYIDGVRATDLIVSKGVKPNEKIIYDPLKLNYYSVSNVFEDDHDVSTRIEVNNILSTNEECMSYAYDGKFINYVHGKNMVKSREFSFLGPHMIDYRVEKSVGLTYIIDDYKNQSKSVKKMRLLTDDEASIVYTRELEKDNFFIIVKGEHIDYKKARFEYLENGDPVIFINDVPLYILTGFKNAKNYEVKLGKPYEGELDNRVTNETTKTVETTSTTTDYQCVEGDCKEGWGRVVVNDIITDATFINSEMTGVAYITYPSDSYYHGEYVQNRRSGVGIYKWTNGNRYIGKWKDGKQHGYGFTMNKENQITSAGLFENGKLLTSYYDDYNNGKSTGNCTGNCFDGFGMYSYNNGDKYWGFFSSGKRAHIGIYSWNNGSIYTGSYMEQGKRTGYGMYSYVDGSIFKGMFIDDRIDGLGVMQYKKTGNVVQGVFNNKGAKVRDY
>NC_020156.1|WP_015363175.1|2767647_2769864_+|response-regulator
MSKKHTVFYCLFLFILFTGFAQQDVEVYHKENLNYDEKQLDSVSYVLMEYYNKGTFEKILEQSPALIQNAIKIDAYQLELRFRNILGSTFIKLDDIENANIFFNHALQTAKKKKDSIGVMMMYISLGNTHFKDDKEKALAYFNKGLDFGYNGDRSEDGKFIIHHNLAELYIKKKNLAKAKYHLSKIVDKIDQQEPAVRRKGYAGTTNFIKASIHLMENQPALAIEDALLALKTKDDYDETYLLETYMVLMESYEKLEDFKNVVFYNKLYDSLRAVQYEKDKIEQQQIAKVDLHFDNIEKELRASELENDLINQKATESNLYLIFSIVVGLLLFLILMLLLKEKTKRDKLLKILTQKNAEYLKAKEKSEELARSNTKFLSTISHELRTPLYGIIGLSSLFLKEPKLRPFENDFKSLKFSADYLLALVNDVLHINKFNSKKGQELQEVHFNLSTLLFNIKSSFDFLNEKHNNDVELIIDPKIPEILYGDQTKISQVLMNLMSNASKFTEDGSVKLEVIFNEKKDDHYHLLFRIQDTGRGIQLDQQKAIFEEFTQVKDVNDLEHHGTGLGIPIVNKILFILGSTLELDSTYKVGSTFSFQLSLKEGEAENITQEVASKNIKSLAGKRVLTVDDNKINQLVTQKVLDQIGMLHSTASDGLEAIKMAKSSDFDFILMDINMPVMNGIIATQEIRKFNQNTPIIALTATIFNNPEEEIYCYGFNSIIVKPYRTAHLVEAFLKEL
>NC_020156.1|WP_015363176.1|2769894_2770734_-|hypothetical-protein
MKTLFSITCLVLILNTNYSRAQKVSTIEVGDIVKLIAPLKVKTGATVMRLTAQTDASNDVTILQQGYLFHVVEIDTTANTVELLAINFKDKKNFLSSKQSDIVNQQIRNQYNNKVYTVNLDDFKKFARLYKYATIPDRISIGIITLPFKARITGDNVAFDTEFNFNSTANVRVYSYKNTHLNLQIGAGLGSVNLNESNTNYLNGTETIQAQDVRTLSILTGFMVSHRDIQIGIYGGWDHINNQKNFQWENNGKLWLGLGVGVNIFNNKTETTVTQQSTN

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Crispr_ID: NC_020156_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020156_6

3501124-3501237

Orphan

Consensus_repeat	Method
ATTTATTACGCTTTTACGTAATAATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020156_6

>merge|NC_020156|6|3501124-3501237|CRISPRCasFinder
AATTATTACATATTTACGTAATAAAGTATATTTATTACGCTTTTACGTAATAATATAGAGTATTACATAATAATGTAATATATTTGATTTATTACGCTTTTACGTAATAATATA

>NC_020156|6|5|3501124-3501237|CRISPRCasFinder
AATTATTACATATTTACGTAATAAAGTA	TATTTATTACGCTTTTACGTAATAATATAGAGTATTACATAATAATGTAATATATTTG
ATTTATTACGCTTTTACGTAATAATATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020156.1\|WP_111474757.1\|3488325_3489018_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363873.1\|3497653_3499327_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_020156.1\|WP_158441691.1\|3495395_3497477_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NC_020156.1\|WP_015363882.1\|3505674_3506346_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363886.1\|3508106_3508514_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363869.1\|3491302_3493015_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NC_020156.1\|WP_015363875.1\|3499412_3500870_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|376878
NC_020156.1\|WP_041567501.1\|3490167_3491136_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_020156.1\|WP_015363870.1\|3493019_3494840_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131258
NC_020156.1\|WP_015363878.1\|3502556_3502925_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363876.1\|3501248_3501869_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363877.1\|3501852_3502560_+\|DUF3307-domain-containing-protein	unknown	unknown	gnl\|CDD\|371703
NC_020156.1\|WP_015363880.1\|3503570_3504905_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236376
NC_020156.1\|WP_015363871.1\|3494862_3495375_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379034
NC_020156.1\|WP_015363881.1\|3505006_3505657_+\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363885.1\|3507332_3508100_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|260081
NC_020156.1\|WP_015363866.1\|3489187_3489439_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NC_020156.1\|WP_041567212.1\|3506437_3507283_-\|hypothetical-protein	unknown	unknown	unknown
NC_020156.1\|WP_015363879.1\|3503028_3503574_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NC_020156.1\|WP_015363867.1\|3489587_3490112_+\|DUF4199-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020156.1\|WP_015363879.1\|3503028_3503574_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	6.0754e-58
NC_020156.1\|WP_015363873.1\|3497653_3499327_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	8.45085e-64
NC_020156.1\|WP_158441691.1\|3495395_3497477_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.48647e-49
NC_020156.1\|WP_015363869.1\|3491302_3493015_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_020156.1\|WP_015363875.1\|3499412_3500870_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	1.34655e-130
NC_020156.1\|WP_041567501.1\|3490167_3491136_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.15675e-69
NC_020156.1\|WP_015363870.1\|3493019_3494840_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	8.75378e-166
NC_020156.1\|WP_015363871.1\|3494862_3495375_+\|thioredoxin-family-protein	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	2.76204e-07
NC_020156.1\|WP_015363880.1\|3503570_3504905_-\|aspartate-kinase	gnl\|CDD\|236376	PRK09084, PRK09084, aspartate kinase III; Validated.	2.81864e-131
NC_020156.1\|WP_015363877.1\|3501852_3502560_+\|DUF3307-domain-containing-protein	gnl\|CDD\|371703	pfam11750, DUF3307, Protein of unknown function (DUF3307). This family of bacterial proteins has no known function.	4.24078e-22
NC_020156.1\|WP_015363885.1\|3507332_3508100_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|260081	cd08544, Reeler, Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.	3.28257e-13
NC_020156.1\|WP_015363866.1\|3489187_3489439_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	6.26423e-42

>NC_020156.1|WP_015363875.1|3499412_3500870_+|DNA-recombination-protein-RmuC
MSSEISWLLFLLLGVVIGAVVAWFFAKTRFSGSLNLLESEKSQLNAQLSQLQPAIEERDKLRHENSQYSAQLEQRIESNQELSARLQKLDKEYRDVAIEKENLNVLLAEQRTAFAKAEEKHTEAQGEIEKLNEKFTKEFENLANKILDEKSTKFTDQNKKNIEQILSPLQDKIKSFEKRVEDTHKDTIDRQSALRQQIIGLKEMNQQMSKETTNLTKALKGDAKMRGNWGELVLERVLEKSGLTKGSEYEVQQTIKTDEGKTLFPDVVINLPGGKKMVIDSKVSLNAYERFINEEDDSLQERYLKEHVASLKKHVSDLSGKSYHDYQIDSPDFVLLFVPIEPAFAMALNHDSNLYSDAFDKNIVIVTPTTLLATLRTIDTMWQNEKQQKNALDIATAAGALYDKFVGLTEDLIKVGSQLDTVKKSYSSSMNKLTEGSGNLVGRIERLKRLGAKANKSLNEKLVNRAIDSDPDFLEASDEEGRLNL
>NC_020156.1|WP_015363873.1|3497653_3499327_+|RluA-family-pseudouridine-synthase
MASIFHFFDLDKGFHLPEKFTFPFLYEPHPLAVEAAEQLKSYLDSFDNWFYDLNLGPENYQHPLGKMFGVLVVQDQDGNLGHLWAYSGVITGEQKDSQFVPLVFNMFAEDSLYARENSKLDDLNAQINVLVNDSDYLKTLKALKNLKKENELLLYNQRKKHANLKAIRKAERQKASETLSDQAYKKLLDQHQTQGMHAKFLLKEYKIYLENKILPLEHFISKRENEIKELKQQRKNLSNQLQKWIFEQYSFLNAKGDRKNAMELFQNIPPYVPPSGTGDCAAPKLLQYAYLHDLKPLAMAEFWYGESLRSQIRKHGHFYPSCRSKCEPILEHMLQGLEVDDNPMLENPAEDKELHLIYEDDYIMAVNKPEEFLSVRGKTIEDSVETRMKQRFPGASGPLIVHRLDMSTSGILVLTKSLAVHKKLQNQFEKRTVKKRYVALLDGLVKDDSGFIDLALRVDLDNRPFQLVDAENGKSARTRYEVIERKDGKTRVHFYPITGRTHQLRVHAAHPLGLNCPIIGDDLYGHKKDRLYLHAEQLVFIHPVTLKPVVLKVPTPF
>NC_020156.1|WP_158441691.1|3495395_3497477_-|transporter-substrate-binding-domain-containing-protein
MKNTNFLSLFLLMLLSLMSCQEQDILNEEERKWINGKEEIIVAVYPNYNYPPYLFKDKNGDSEGILMDYLELIEKKAAYKFQIKEYDNFTALMNDAKAGELDLILEIQETPSRNKYLNFYSKLFESPYVIVGKKTPNIPKSRKDFETATFYLPEDVAIVENLKIQFPNAKISSPCKDDLDCLKMIAQKNDAFFIGPRAVTNYHIESNNLSNLKIIKNLGKDYQPSLAVVKDDSMLNDVIYNLVQSVSYEEKKEIKDRWLSQFKRPFYKKSFFWIVLLGIAIFLMIIILGINRYLKYVIRENTKELEKAKTIAERNNKLKTSFINNITHEMRTPMNAIMGFSGLLSKEVLTDTQRSNYLEIINNACLRLMNMMDNVLEVSLLQTGDVSVQKNTVLLDDLLKTVVYKHEENVKLKKIDCNCVIDISEEQNCVVMDQSKLQKIVDNLLDNAIKFTSKGEVTFNSTIDGDTLIITITDTGIGISEERLKTVYDGYSKSNLDMKDLYDGLGLGLTICKAYVSLLNGKINIDSELGKGTTVNVYLPVDVIDQQQLCEKEEMEPQERSHSFHKVLIAEDVNLNYLFLKSLLDKVVDFDFQFIRAVNGQEAIDLVLREKDIDIIFMDIQMPVMDGYQATTAIKKSHPSIPIIIQTAYSTAEDREQAFKAGADDFITKPIKPKTIENIFKKYLKTRGEKVTF
>NC_020156.1|WP_015363871.1|3494862_3495375_+|thioredoxin-family-protein
MRKFTLLFALLIGSSTVANAQETVEVLMEDALNEAAESNKHVLVKFEASWCGWCHRMTRQIKDQKVSTYFSDNYVVLPIVVFENGDKVKLENPGSRELIAKYKGANAGLPFWVILDATGKIVTDSFNEKAQNLGCPASKEEVAVFIEKLKATSEMTEKDVKNVKLVFTDK
>NC_020156.1|WP_015363870.1|3493019_3494840_+|ATP-binding-cassette-domain-containing-protein
MNYFKEILKYAKPYKSYAVLNIISNVFYALFGALSFVSLIPMLDVLFDKTQAVNVAPAWEGINNTMDYIKGYLGYYITTQTDGKEQALIIVIALVLILFFLKNLFGYLGMYFIAYLRNGVLRDIRDDLFKKIVHLPISFFSEKRKGDVIARTSADVLQIQNSFLSILELIIKEPLNIIFTLAIMLVMSAKLTIFMLIFLPISGFLISRLGKKLKKRSGQVQKEQGYFLSLLEETLSGLKVIKGFNAEDRLTESFQNSTNRMYRFAVKLNHRKGFASPVSEFLGILVIGILLWFGGRLVLIEESIDPTTFIGFMVLAYNILTPAKALSKASYQIKEGNASAERVLEILHTKNEIEDKKGAIAVLAFAKAIQVNNVTFSYEEEPVLKNFSLDIPKGTSVALVGQSGSGKSTIANLLTRFYDVENGTITIDGTNIKDVTLQSLRDQMALVTQDSILFNDTIATNVALSDKTASEEQIVDALKIANAWEFVKDLPKGIHTNIGDSGGKLSGGQKQRLSIARAVLKNAPILILDEATSALDTESERLVQDALEKVMKNRTSIIIAHRLSTIQNADHIVVMKKGEIVEQGTHTDLLAKEGLYHGLVGMQSLA
>NC_020156.1|WP_015363869.1|3491302_3493015_+|phospho-sugar-mutase
MNKDHILKTAQSWTQAPFDEATITRTLALITANNDEFQESFYKNLEFGTGGMRGIMGVGTNRINKYTLGKNTQGLSQYLNAQFPDEQVKVAIAYDCRRNSKELAQVVADVFSANGIHVYLFAELRPTPLLSYTVKAKNCHAGIVLTASHNPPEYNGYKVYWQDGGQLVPPQDQEILDLISLLDFKDINFNGKPELIELLTEDDDNAFIEDSIKAGKIAGDVDRSRLKIVFTSLHGTSITLIPETLKRAGYSDLHVVKEQAFPDGEFPTVKSPNPEEPEALKMAVDLANKVNADIVIGTDPDSDRLGVAVRDNDGNMVLLNGNQTMIAMTDFLLKQTDLKSLNDPFIGSTIVSTPMMHDLARSYNVECKEGLTGFKWIAKMIKDHPQQDFVGGGEESFGYMVGDFVRDKDAVTACLLACEMYAFAKENNSTVYKELMKLYVEHGVYQEKLVSLVKKGISGAAEIKQMMVDLRENPPAQIGGQDVTIVEDYAASTRENKQLQKTETIGIPKSNVLIFYLADGSKIAARPSGTEPKIKFYISVKSTLDHVDDYSKVQGQLEEKINGILASFDM
>NC_020156.1|WP_041567501.1|3490167_3491136_+|glycosyltransferase-family-2-protein
MDLSIIIPLLNEADSLPELQEWIDRVMKSRSLSYEVIYIDDGSTDSSWEIISSLSRKRDTTNSPNPIKGIKFQANYGKSQALHAGFNQADGNVVITMDADLQDSPDEIPELYAMIAEQNYDLVSGWKKKRYDSVISKNLPSKLFNWAARKTSGVQLNDFNCGLKAYNSQVIKNIDVHGEMHRYIPVLAKNAGFTKITQKEVIHQARKYGTTKFGYERFINGFLDLITIAFISKYGKRPMHLFGSLGVIMFLIGFTTAGYVGGSKLYRMYNDIPYRLVTDNPWFYIALTTMILGTLFFIAGFLGELILRNGNQKDRYNISERI
>NC_020156.1|WP_015363867.1|3489587_3490112_+|DUF4199-domain-containing-protein
MEQSIKRNSFIIGLIGAAITFSIYIYMWQAQDYLNSLVNTSIYIYPIILGVIAQVWARFVMKGNVSFKQVILAYFICIVMVFLTESITYYTLLNYVDVNAKEILLNAWRGISEQGTSDLAQTKVFKEPTFSFSEFALGFATKSLMFTVPGLITGLVISKIPQVNQVNTTHKVQD
>NC_020156.1|WP_015363866.1|3489187_3489439_-|type-B-50S-ribosomal-protein-L31
MQKGIHPENYRLVAFKDMSNDDIFITKSTANSNETIEHEGTEYPLIKMEISRTSHPFYTGESKLIDTAGRIDKFKNKYKKFKK
>NC_020156.1|WP_111474757.1|3488325_3489018_+|hypothetical-protein
MKNNYFLIMLVLLLLSSCQKQITKSDVLDTEQSKYSIRTIDTLINSKDYLILGHENAKIKIINIQERENFPDFRIVDQKNSILIIAKNLNNSKLEIFEKWNPKYNFNYYKSSVFKGKLAEPDFNSNPAAKRFITRINEECKKGINFAGKYTLVIWGCGTSCQNGVIVNRINGEIYDGYSSTLGSKFKKDSKLILFNSKLINEETKLIKFHNMVDLRIETWNGSKFVKESN
>NC_020156.1|WP_015363876.1|3501248_3501869_+|hypothetical-protein
MEVVLAGDIIGSKKNQPNDYLTIIEPILKKHSKKGMYQIYRGDSFQSWMEDPLLALDCAIELKAALKRSSTLDVRIAIGLGRINLIENNIAKSNGSALTYSGELLDQLKSKEQEIMVRSGNELDHYMNIILKLALLYMNSWTENGAATIYEMFKTPHITQEELGKKLGVQQATASRRLDRANWQETQELLNTYKRFYKDVSHGNTN
>NC_020156.1|WP_015363877.1|3501852_3502560_+|DUF3307-domain-containing-protein
MEILIKLLIVHFLGDFVLQTDKFNKKKEKHKLRSYHLYIHALIHGLLSWLLLWKLEYWYIGLLIFITHLIIDAGKLYFSTKKNQRWLFALDQLAHIIIIVLLASSVSQINFIISDRVLEFIWPLLLCVVFLTSPVAIMLKVFFTRWKLTDDDTGIYGLKNAGRWIGMIERLLIFLFIITDNFSAVGLLLTAKSVFRFGDLSKAKNMKLTEYVLIGTLLSFGIAILIGLLFKNYMI
>NC_020156.1|WP_015363878.1|3502556_3502925_+|hypothetical-protein
MKKILGVILATILIMMVLWYTAIYFINYSTGERSGELIKFSHKGFVVKTWEGEISQGISGAQIFSFSVMDNQPEVIEALKEYQGEYVKLRYEEKFGTFFFWGDTKYFITEVTREQSPHFNRN
>NC_020156.1|WP_015363879.1|3503028_3503574_+|acyl-CoA-thioesterase
MKDQFKSPEQSRVMLSLLMLPSHANFSGKIHGGYVLSLIDQIAFACASKHCGNYCVTASVDVVDFLAPIEVGEMLTLRASVNYVGNSSIVVGIRVDAENIQTGVTKHCNSSFLTMVAKDENGNTVPVPGLKISSETHVRRFARAIKRKEIKQHSNSEIAAANFSDPKYREQLKKYKVEINL
>NC_020156.1|WP_015363880.1|3503570_3504905_-|aspartate-kinase
MLVQKFGGTSVGSVKNMNHVKNIIADGSKKVVVLSAMSGTTNALVELSEYIREQKVEAAFELINELHHEYLVTINQLLQNHELAIETQNYVSAVFEDLKKLVDLDHTELIYNKIVAQGELLSTFLFSRFLIQEGINAALLPALDFMRVDNNNEPDAFYIKQNLQRILNDNNEIDIFITQGFICLDVQGQISNLQRGGSDYTASIIGAAIKAEEVQIWTDIDGFHNNDPRFVENTTAISQISFDEAAELAYFGAKILHPQTVMPVRALNIPVRLKNTLSPDSFGTLITQEVHGEGIKAIAAKDGIYAIKIKSARMLQAHGFLKRVFEVFEKYETPIDMVTTSEIAVSLTIDNALYLDAIVQDLEKIATVEVDEAMSIVCLVGNNIIYHHDTPRLFQILQDVSVRMIAYGGSNNNISLLINTADKKETLRKLQGYVFESQEELVEF
>NC_020156.1|WP_015363881.1|3505006_3505657_+|hypothetical-protein
MKTVADCVEEILVTQPFLEEALSRRIINFSALAEELQNTISEMLRKPVKTGAIMMALRRYHPPKDLRHSNNLKSILKNLGDITVRSSLTDFTFKNSNTLILNHSKVLETINPNVFYGFSRGVHESNLVISTSEKEHILSEFKNETMTSMQDNLCAISLALPTNNTQIPGLYYQIFKRFAWEGISLHEVISTTNEFSVLVEDHAVDKAFSAIKKLGN
>NC_020156.1|WP_015363882.1|3505674_3506346_+|hypothetical-protein
MKIIFRIFILTFLCSCNDSVQKNKPEESLTPSGKLIQTNEETSLKIYDFDTLLTNGYHLRFDVYEKSNEKSLAQSLTLMKGETTIQKLNETSYPSLSKNLGYIGADFKNHFLFVQSYGSGNPNLFQLIEKRTGNEIVEGTFVDVDEKQEVFLYIKDEHSDHVKTFLYDLRNGNERRLKEFENKECSGAITSIRNCIEIVTADENEVVVEWKNQNEKRRETYNR
>NC_020156.1|WP_041567212.1|3506437_3507283_-|hypothetical-protein
MKYLYTILFALLASIAVAQEDLLEGIEIEEDNEVTSTWKSLKVVNFETTKLVAPKELQVVISHRFGSVENGIDDLFGLDNAVTRFQFVYGLTDWMHIEASRSGFNKTYQLASKFKLKRQEKEGFPFSIALFTAIDANTDLDDAIFPKLEFVDRLGYTAQLIIARKISKRLSAQISPTFFHQNFVPFDPQDNTQYALGIGARYKLTNRWSLNADYGAHLNRADGSPFVNPLSIGVDLETGGHVFQMHFTNAQPMLTNGFLSQGTGDWLDGRFYFGFNLVRVF
>NC_020156.1|WP_015363885.1|3507332_3508100_-|T9SS-type-A-sorting-domain-containing-protein
MKKNYPFYSILTAIPIALFALVAFTGGQPGQFSGSPGDGGSTCTNCHAPGANHGGTPALTNVPTAYAAGQTYNLNLAINGSSVSKFGFNITAETAGGTKVGSWTAGTGTRLRSDSNGLTHNSSGSASNNWNLSWTAPASDLGDVTFYYATIQANNANGNGGDQMVSGQSNAILTNEEAIISSFKLFPTHAVSDINIELAHSEDGELLIYNMSGQPVLRSKIGRQNQIDVSSLSTGVYISQVLVDDKISTQKFIKK
>NC_020156.1|WP_015363886.1|3508106_3508514_-|hypothetical-protein
MKKIVSVIILLFLFIFIAGYLYLYQDHRDVNATVATNSFNSSELLSIFQDADIENDKEILDQVILITGVATSKSAYTVTLDDKIFIEFNHKDDETFKYIFKVNETYTIKGRCLGYDDLLEEVKMDQAILENENPK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_020156_2	2.2\|1101962\|30\|NC_020156\|PILER-CR	1101962-1101991	30	NZ_AP022320	Burkholderia sp. THE68 plasmid BTHE68_p2, complete sequence	104708-104737	9	0.7

1. spacer 2.2|1101962|30|NC_020156|PILER-CR matches to NZ_AP022320 (Burkholderia sp. THE68 plasmid BTHE68_p2, complete sequence) position: , mismatch: 9, identity: 0.7

tgaaattaaaagctcgatgaaacatactat	CRISPR spacer
cgaaattgaaagctcgaggaaacaagaacg	Protospacer
.******.********* ****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

693001 : 699313

Bacillus_virus(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566883.1\|693001_693685_+	NUDIX hydrolase	G3MA14	Bacillus_virus	4.3e-29	38.2
WP_015361272.1\|693813_695268_+	nicotinate phosphoribosyltransferase	A0A218KC49	Bacillus_phage	2.0e-132	52.2
WP_015361273.1\|695278_696040_+	ribose-phosphate pyrophosphokinase	A0A1E1GDI1	Vibrio_phage	1.2e-24	34.9
WP_015361274.1\|696088_696613_+	hypothetical protein	NA	NA	NA	NA
WP_015361275.1\|696572_696989_+	hypothetical protein	NA	NA	NA	NA
WP_015361276.1\|696975_697515_+	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	1.6e-47	48.9
WP_015361277.1\|697511_698240_+	serine/threonine protein phosphatase	S0A0Y6	Cellulophaga_phage	2.8e-42	36.5
WP_015361278.1\|698252_698801_+	2OG-Fe(II) oxygenase	M1PY53	Moumouvirus	7.3e-11	27.8
WP_015361279.1\|698797_699313_+	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	4.4e-26	42.0

DBSCAN-SWA_2

3028015 : 3068517

Sulfolobus_monocaudavirus(25.0%)

transposase,integrase,protease

attL 3020419:3020439|attR 3072399:3072419

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3020419:3020439	attL	NA	NA	NA	NA
WP_041567168.1\|3028015_3028678_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_015363413.1\|3028680_3029556_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_015363414.1\|3029624_3030269_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_015363415.1\|3030265_3030988_-	RDD family protein	NA	NA	NA	NA
WP_015363416.1\|3031023_3032004_+	stage II sporulation protein M	NA	NA	NA	NA
WP_015363417.1\|3031972_3032908_+	hypothetical protein	NA	NA	NA	NA
WP_015363418.1\|3032897_3033668_+	hypothetical protein	NA	NA	NA	NA
WP_111474790.1\|3033664_3034948_+	DUF4350 domain-containing protein	NA	NA	NA	NA
WP_015363420.1\|3034978_3036109_+	MoxR family ATPase	W0UTA7	Sulfolobus_monocaudavirus	1.7e-09	27.1
WP_041567170.1\|3036108_3037443_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_015363422.1\|3037442_3037871_+	hypothetical protein	NA	NA	NA	NA
WP_015363423.1\|3037878_3038082_-	Lacal_2735 family protein	NA	NA	NA	NA
WP_015363424.1\|3038249_3038963_-	DUF4197 domain-containing protein	NA	NA	NA	NA
WP_111474793.1\|3039178_3039622_+	hypothetical protein	NA	NA	NA	NA
WP_041567171.1\|3039652_3040198_+	hypothetical protein	NA	NA	NA	NA
WP_015363427.1\|3040266_3041157_-	hypothetical protein	NA	NA	NA	NA
WP_015363428.1\|3041306_3041555_-	hypothetical protein	NA	NA	NA	NA
WP_015363429.1\|3041535_3041847_-	thioredoxin family protein	NA	NA	NA	NA
WP_015363430.1\|3041930_3042566_-	peroxiredoxin	NA	NA	NA	NA
WP_015363431.1\|3042780_3043242_-	hypothetical protein	NA	NA	NA	NA
WP_015363432.1\|3043238_3044186_-	hypothetical protein	NA	NA	NA	NA
WP_015363433.1\|3044303_3045137_+	DUF4349 domain-containing protein	NA	NA	NA	NA
WP_015363435.1\|3045391_3046426_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_041567173.1\|3047028_3048285_-	esterase	NA	NA	NA	NA
WP_015363437.1\|3048432_3048873_-	alpha-amylase	NA	NA	NA	NA
WP_015363442.1\|3050422_3050905_-	hypothetical protein	NA	NA	NA	NA
WP_015363443.1\|3050904_3051954_-	hypothetical protein	NA	NA	NA	NA
WP_015363445.1\|3052563_3053079_-	hypothetical protein	NA	NA	NA	NA
WP_041567174.1\|3053089_3054136_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	1.7e-24	27.3
WP_015363452.1\|3054256_3055813_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_041567175.1\|3056074_3056839_-	hypothetical protein	NA	NA	NA	NA
WP_041567176.1\|3057082_3058033_-	hypothetical protein	NA	NA	NA	NA
WP_015363367.1\|3058081_3059638_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_041567177.1\|3059853_3060189_+	hypothetical protein	NA	NA	NA	NA
WP_041567178.1\|3060169_3060397_-	hypothetical protein	NA	NA	NA	NA
WP_015363451.1\|3060551_3061217_-	hypothetical protein	A0A0R6PJY5	Moraxella_phage	5.7e-18	29.2
WP_015363452.1\|3061280_3062837_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_146250832.1\|3063113_3063590_-	hypothetical protein	NA	NA	NA	NA
WP_015363454.1\|3063681_3064068_-	hypothetical protein	NA	NA	NA	NA
WP_015363455.1\|3064088_3064538_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_015363456.1\|3064524_3066234_-	amidohydrolase	NA	NA	NA	NA
WP_015363457.1\|3066253_3067027_-	hypothetical protein	NA	NA	NA	NA
WP_015363458.1\|3067686_3068517_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	3.8e-27	29.4
3072399:3072419	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020156

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection