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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_020210 Geobacillus sp. GHH01, complete sequence 6 crisprs cas6,csm6,csx1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csa3,c2c10_CAS-V-U3,DEDDh,WYL,RT,cas3,DinG,c2c4_V-U1,cas14j 0 8 14 0

Results visualization

1. NC_020210
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020210_1 327656-328085 TypeIII NA
6 spacers
cas6,csm6,csx1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020210_2 329986-330210 TypeIII NA
3 spacers
cas6,csm6,csx1,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020210_3 339640-340735 TypeIII NA
16 spacers
cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx1,csm6,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020210_4 2018816-2019578 Orphan NA
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020210_5 2027515-2028329 Orphan NA
12 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020210_6 2531607-2531693 Unclear NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_020210_5 5.9|2028059|38|NC_020210|CRT,CRISPRCasFinder,PILER-CR 2028059-2028096 38 NC_029073 Geobacillus virus E3, complete genome 97347-97384 2 0.947
NC_020210_3 3.5|339938|39|NC_020210|PILER-CR,CRISPRCasFinder,CRT 339938-339976 39 NZ_CP011146 Bacillus cereus strain FORC_013 plasmid pFORC13, complete sequence 19295-19333 7 0.821
NC_020210_2 2.5|330148|33|NC_020210|CRISPRCasFinder,CRT 330148-330180 33 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 457453-457485 8 0.758
NC_020210_2 2.5|330148|33|NC_020210|CRISPRCasFinder,CRT 330148-330180 33 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 50986-51018 8 0.758
NC_020210_1 1.4|327888|36|NC_020210|PILER-CR,CRISPRCasFinder,CRT 327888-327923 36 NZ_CP014599 Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence 267611-267646 9 0.75
NC_020210_1 1.1|327686|37|NC_020210|PILER-CR,CRISPRCasFinder,CRT 327686-327722 37 MF001361 Enterococcus phage EF5, partial genome 17196-17232 10 0.73
NC_020210_1 1.1|327686|37|NC_020210|PILER-CR,CRISPRCasFinder,CRT 327686-327722 37 MF001358 Enterococcus phage EF1, partial genome 100114-100150 10 0.73
NC_020210_4 4.1|2018846|35|NC_020210|CRISPRCasFinder,CRT 2018846-2018880 35 NZ_CP024791 Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence 122764-122798 10 0.714
NC_020210_4 4.12|2018848|35|NC_020210|PILER-CR 2018848-2018882 35 NZ_CP024791 Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence 122764-122798 10 0.714
NC_020210_2 2.4|330081|37|NC_020210|CRISPRCasFinder,CRT 330081-330117 37 NZ_CP050185 Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence 75065-75101 11 0.703

1. spacer 5.9|2028059|38|NC_020210|CRT,CRISPRCasFinder,PILER-CR matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 2, identity: 0.947

tatgcctgatattgtgcttgccgatgaagtgcagtttt	CRISPR spacer
tatgcctgatattgtgcttactgatgaagtgcagtttt	Protospacer
*******************.*.****************

2. spacer 3.5|339938|39|NC_020210|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011146 (Bacillus cereus strain FORC_013 plasmid pFORC13, complete sequence) position: , mismatch: 7, identity: 0.821

gcaagaaaatgattgaatacaaatcgacagcacccaaag	CRISPR spacer
gcaagaaaacgattgaatacaaatcgactgcaagcgatc	Protospacer
*********.****************** ***  *.*  

3. spacer 2.5|330148|33|NC_020210|CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

tttttgcttgcggcggtcaagcaaatctatgat	CRISPR spacer
tcctgggttgcggcggtcgagcaaacctatgcc	Protospacer
*..* * ***********.******.***** .

4. spacer 2.5|330148|33|NC_020210|CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

tttttgcttgcggcggtcaagcaaatctatgat	CRISPR spacer
tcctgggttgcggcggtcgagcaaacctatgcc	Protospacer
*..* * ***********.******.***** .

5. spacer 1.4|327888|36|NC_020210|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.75

atttcttcgccgcgttcccaaaggattcgataatat	CRISPR spacer
tctttttcgccgagttcccaaaggattcctggatac	Protospacer
 .**.******* ***************   .***.

6. spacer 1.1|327686|37|NC_020210|PILER-CR,CRISPRCasFinder,CRT matches to MF001361 (Enterococcus phage EF5, partial genome) position: , mismatch: 10, identity: 0.73

tatctcccttttctctttcttgtaaagctaaatcagc	CRISPR spacer
gttttgcattttctcgttcttgtaaagctaattcttt	Protospacer
  *.* * ******* *************** **  .

7. spacer 1.1|327686|37|NC_020210|PILER-CR,CRISPRCasFinder,CRT matches to MF001358 (Enterococcus phage EF1, partial genome) position: , mismatch: 10, identity: 0.73

tatctcccttttctctttcttgtaaagctaaatcagc	CRISPR spacer
gttttgcattttctcgttcttgtaaagctaattcttt	Protospacer
  *.* * ******* *************** **  .

8. spacer 4.1|2018846|35|NC_020210|CRISPRCasFinder,CRT matches to NZ_CP024791 (Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence) position: , mismatch: 10, identity: 0.714

acaataatcagttcaaaatcttcttcggtttgatt	CRISPR spacer
ccccaaatcagttcaaaaccttctttggttgtacc	Protospacer
 *   *************.******.****  *..

9. spacer 4.12|2018848|35|NC_020210|PILER-CR matches to NZ_CP024791 (Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence) position: , mismatch: 10, identity: 0.714

acaataatcagttcaaaatcttcttcggtttgatt	CRISPR spacer
ccccaaatcagttcaaaaccttctttggttgtacc	Protospacer
 *   *************.******.****  *..

10. spacer 2.4|330081|37|NC_020210|CRISPRCasFinder,CRT matches to NZ_CP050185 (Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence) position: , mismatch: 11, identity: 0.703

caattaatttattttcttcttttacgcaaggaaaaac	CRISPR spacer
caattaatataatttcttcttttacgattaatgttac	Protospacer
******** ** **************   .. .  **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 171834 : 234443 54 Klosneuvirus(22.22%) coat,protease,transposase NA
DBSCAN-SWA_2 280374 : 288792 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 762112 : 798197 42 Tupanvirus(25.0%) transposase,coat NA
DBSCAN-SWA_4 890120 : 896595 10 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1297239 : 1328914 19 Leptospira_phage(33.33%) transposase NA
DBSCAN-SWA_6 1714547 : 1736278 15 Streptococcus_phage(40.0%) integrase,transposase attL 1721726:1721785|attR 1731655:1731737
DBSCAN-SWA_7 1741601 : 1762985 15 Indivirus(33.33%) integrase,transposase attL 1744751:1744767|attR 1765719:1765735
DBSCAN-SWA_8 2160813 : 2223398 47 Geobacillus_virus(14.29%) transposase NA
DBSCAN-SWA_9 2307341 : 2318041 13 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_10 2332573 : 2367181 39 Diadromus_pulchellus_ascovirus(20.0%) protease,transposase,coat NA
DBSCAN-SWA_11 2379265 : 2389118 11 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_12 2660403 : 2721871 57 Salmonella_phage(20.0%) protease,tRNA,transposase,coat NA
DBSCAN-SWA_13 3340845 : 3383922 34 Mycoplasma_phage(33.33%) transposase NA
DBSCAN-SWA_14 3552597 : 3562417 8 uncultured_Mediterranean_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage