CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011883	Mycobacterium haemophilum DSM 44634 strain ATCC 29548 chromosome, complete genome	17 crisprs	csa3,WYL,DinG,cas3,DEDDh	4	6	1	0

1. NZ_CP011883

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011883_1

• CRISPR_ID: NZ_CP011883_1
• CRISPR_location: 542175-542266
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_1

Consensus_repeat	Method
ATGGCCAACAATCCAACCAGCAGCTG	CRISPRCasFinder

spacers of NZ_CP011883_1

>1.1|542201|40|NZ_CP011883|CRISPRCasFinder
AAAGAGCTTTGCCCAAAGCAGCAGTAGGATTCCGATCGCG

CRISPR arrays and Neighbor proteins around NZ_CP011883_1

CRISPR arrays

The CRISPR arrays of NZ_CP011883_1

>merge|NZ_CP011883|1|542175-542266|CRISPRCasFinder
ATGGCCAACAATCCAACCAGCAGCTGAAAGAGCTTTGCCCAAAGCAGCAGTAGGATTCCGATCGCGATGGCCGACAATCCAACCAGCAGCTG

>NZ_CP011883|1|1|542175-542266|CRISPRCasFinder
ATGGCCAACAATCCAACCAGCAGCTG	AAAGAGCTTTGCCCAAAGCAGCAGTAGGATTCCGATCGCG
ATGGCCGACAATCCAACCAGCAGCTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_047313690.1|535450_536305_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047313694.1|528655_530281_+|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573
NZ_CP011883.2|WP_054880755.1|549374_552257_-|RND-family-transporter	unknown	unknown	gnl|CDD|129913
NZ_CP011883.2|WP_047313688.1|537054_537630_-|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|182015
NZ_CP011883.2|WP_168162498.1|544893_545031_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047313692.1|531318_531720_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880759.1|534532_534916_+|VOC-family-protein	unknown	unknown	gnl|CDD|319923
NZ_CP011883.2|WP_047313693.1|530434_531295_+|DUF559-domain-containing-protein	unknown	unknown	gnl|CDD|225408
NZ_CP011883.2|WP_156406693.1|547678_548608_+|PPE-domain-containing-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054878815.1|527849_528344_-|cupin-domain-containing-protein	unknown	unknown	gnl|CDD|380345
NZ_CP011883.2|WP_082607715.1|542955_543135_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_168162565.1|552253_552676_-|hypothetical-protein	unknown	unknown	gnl|CDD|283157
NZ_CP011883.2|WP_156406692.1|543223_544138_-|PPE-domain-containing-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_047313328.1|546667_546850_+|rubredoxin	unknown	unknown	gnl|CDD|224687
NZ_CP011883.2|WP_052915595.1|531737_533039_-|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054878814.1|534926_535442_+|mycothiol-transferase	unknown	unknown	gnl|CDD|368218
NZ_CP011883.2|WP_156166465.1|546846_547482_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|375982
NZ_CP011883.2|WP_047313495.1|546497_546671_+|rubredoxin	unknown	unknown	gnl|CDD|366011
NZ_CP011883.2|WP_054880758.1|538286_539486_+|IS110-family-transposase	unknown	unknown	gnl|CDD|376564
NZ_CP011883.2|WP_047313329.1|545274_546498_+|alkane-1-monooxygenase	unknown	unknown	gnl|CDD|239589

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_047313694.1|528655_530281_+|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP011883.2|WP_054880755.1|549374_552257_-|RND-family-transporter	gnl|CDD|129913	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein. The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate].	0
NZ_CP011883.2|WP_047313688.1|537054_537630_-|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|182015	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK.	2.56084e-94
NZ_CP011883.2|WP_054880759.1|534532_534916_+|VOC-family-protein	gnl|CDD|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.16278e-43
NZ_CP011883.2|WP_047313693.1|530434_531295_+|DUF559-domain-containing-protein	gnl|CDD|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	2.77733e-07
NZ_CP011883.2|WP_156406693.1|547678_548608_+|PPE-domain-containing-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.24699e-30
NZ_CP011883.2|WP_054878815.1|527849_528344_-|cupin-domain-containing-protein	gnl|CDD|380345	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains. This family contains quercetinase (also known as quercetin 2,3-dioxygenase, 2,3QD, QDO and YxaG; EC 1.13.11.24), a mononuclear copper-dependent dioxygenase that catalyzes the cleavage of the flavonol quercetin (5,7,3',4'-tetrahydroxyflavonol) heterocyclic ring to produce 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. Bacillus subtilis quercetin 2,3-dioxygenase (QDO) is a homodimer that shows oxygenase activity with several divalent metals such as Mn2+, Co2+, Fe2+, and Cu2+, although the preferred one appears to be Mn2+. The dioxygen binds to the metal ion of the Cu-QDO-quercetin complex, yielding a Cu2+-superoxo quercetin radical intermediate, which then forms a Cu2+-alkylperoxo complex which then evolves into endoperoxide intermediate that decomposes to the product. Quercetinase is a bicupin with two tandem cupin beta-barrel domains, both of which are included in this alignment model. The pirins, which also belong to the cupin domain family, have been shown to catalyze a reaction involving quercetin and may have a function similar to that of quercetinase.	1.25488e-17
NZ_CP011883.2|WP_168162565.1|552253_552676_-|hypothetical-protein	gnl|CDD|283157	pfam05423, Mycobact_memb, Mycobacterium membrane protein. This family contains several membrane proteins from Mycobacterium species.	1.05682e-86
NZ_CP011883.2|WP_156406692.1|543223_544138_-|PPE-domain-containing-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.27128e-39
NZ_CP011883.2|WP_047313328.1|546667_546850_+|rubredoxin	gnl|CDD|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	2.50255e-19
NZ_CP011883.2|WP_052915595.1|531737_533039_-|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.62264e-62
NZ_CP011883.2|WP_054878814.1|534926_535442_+|mycothiol-transferase	gnl|CDD|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.85687e-23
NZ_CP011883.2|WP_156166465.1|546846_547482_+|TetR-family-transcriptional-regulator	gnl|CDD|375982	pfam18556, TetR_C_35, Bacterial Tetracyclin repressor, C-terminal domain. This is the C-terminal tetracyclin repressor domain found in bacteria. Family members include TetR family transcriptional regulators Rv3249c and Rv1816 found in Mycobacterium tuberculosis. Palmitic acid (a fatty acid) and isopropyl laurate (a fatty acid ester), were identified as binding ligands to Rv3249c and Rv1816 respectively. Similar to other TetR family regulators, these proteins are alpha-helical dimeric proteins consisting of a smaller N-terminal DNA-binding domain and a larger C-terminal regulatory domain.	2.42223e-38
NZ_CP011883.2|WP_047313495.1|546497_546671_+|rubredoxin	gnl|CDD|366011	pfam00301, Rubredoxin, Rubredoxin.	3.89925e-19
NZ_CP011883.2|WP_054880758.1|538286_539486_+|IS110-family-transposase	gnl|CDD|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.84657e-21
NZ_CP011883.2|WP_047313329.1|545274_546498_+|alkane-1-monooxygenase	gnl|CDD|239589	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active site structure of AlkB is not known, however, spectroscopic and genetic evidence points to a nitrogen-rich coordination environment located in the cytoplasm with as many as eight histidines coordinating the two iron ions and a carboxylate residue bridging the two metals. Like all other members of this superfamily, there are eight conserved histidines seen in the histidine cluster motifs: HXXXH, HXXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase. Also included in this CD are terminal alkane hydroxylases (AlkM), xylene monooxygenase hydroxylases (XylM), p-cymene monooxygenase hydroxylases (CymAa), and other related proteins.	6.81978e-143

Protein sequences

>NZ_CP011883.2|WP_054880758.1|538286_539486_+|IS110-family-transposase
MTASQLVVIGADTHLDTVHLATLSDTGKPLADAEFPTNPTGYCEALTWAQSFGTVLIAGVEGTSSYGAGLTRALQDAGIEVVEVNRPDRATRRRRGKSDPLDAYAAARNALSGDGLAAPKDERTTALSALLTARRGAVKARTAATNQIQSLLITAPAELRERYRRCNTAGLVKALARCRLVAHGDPTTMAVLSAVKTLALRAQFLHRQERELTDQIDTLVQSINPGLRVAHGIGPDTAAALLITAGLNPYRLRSEAAFAALCGVAPVPASSGKTTRHRLSRGGDRSANNALYRIALVRMSNDPRTRDYVARQTTNNRRKAEILRLLKRAIAREVFRLLTRPCVIDDYSDLRPARQAKNITLSTVAEHFGVWPNDISRLERGLQRNDTLAANYRQWLTAA
>NZ_CP011883.2|WP_047313688.1|537054_537630_-|sigma-70-family-RNA-polymerase-sigma-factor
MTGPPPLSSDLDALLRRVARGDRAAFAALYDLTKTRVYGLVTRVLRDSGYSEETTQDVYFEVWRTASEYDSAKGSPLAWLLTMAHRRAVDRVRSEEAGSRRESRYAVANIDPASAPTHDPVAESAMASDERRRVLACLDALTDAQRQCIELAYYDGLTYVEVSQRLAANLSTIKSRMRDALRGLRNCLAAP
>NZ_CP011883.2|WP_047313690.1|535450_536305_+|hypothetical-protein
MRFAVTMLCWLVATVALAVAIPAAWTQCNVVDEAGSAAFAERAAGDPALQSAVAAELATRAMALIAERGGRRYPIDGSVVHDAAVAFTASPSFPSLFAQANRAAHTWLFSEPRSDGNGDQWVVDVAPMLKDSSFQQLLTNHNVKVPATLNVPLTVSTPQPVRQGQLHRLAVWGPRVSIGAAAVSAVCGLLMLTVARGRGRALTSLGVSALLVGAAGWAAIEVGGQYINDALNRSTGDIRQIADVMVGHAAASWHQWLNLTLGAGAALVALGVLVAVLGSLWKRA
>NZ_CP011883.2|WP_054878814.1|534926_535442_+|mycothiol-transferase
MTGTDAAARELLRDAFTRLIEHVDELTDGLTDEVCYYQPTVSANSIAWLIWHSARVQDTQLAEVAGVEQVWTRDSWVDRFGLDLPRNDTGYGHSRDDVAKVRAPAGLLSGYYHAVHQLTLEYVASVNADELARIVDTHWDPPVTASARLVSIIDDCAQHLGQAAYLRGIAQ
>NZ_CP011883.2|WP_054880759.1|534532_534916_+|VOC-family-protein
MIDHIGINCADYPKSQEFYDAVLGVLGFSRQMDFGVAIGYGRDGKPDFWIADAAAGEAKGPNREVHIAFHAADEAAVRAFHEAAVGLGADSLHAPRLWPEYHPGYFGAFVRDPDGNNVEAVCHRAGA
>NZ_CP011883.2|WP_052915595.1|531737_533039_-|PPE-family-protein
MTNPHYAWLPPEINSALMFAGPGSGPLLAAAAAWDELAEDLLSSAASFGSVTADLAGGSWLGASAAAMMAVATQYMGWLSTAAAQATAAASQAAATAAAFEAALAAMVQPAVVAANRVLVQVLAATNWLGQNAPAIADIEAAYEQMWAWDVDAMSGYHAGASAAAEQLAPWQRVLRDLGINIGTNSGSSASGHVSSGTTSVTPSAGSASAASGLNLGYGNSGNFNFGWNNVGNANFGIGNIGNFDIGFGLTGDHQVGIGSFNFSSSAWANLFNPGNANMGIGNPGPLSSSLWTPAAATGPANSGLVGAGLDSPGDVSFFNSGRYVTGGLNAANLNSSALNPVGANTGGFGPALANSSLLNAAAPNQAIAATSGFESGNPNIGVGGAAGPSSTLRNPGTNAATGGIPSSGFFNKVARDTGIVSSDTRQQVPSQP
>NZ_CP011883.2|WP_047313692.1|531318_531720_-|hypothetical-protein
MGAKKVDLKRLAAALTDYPFAYLITVDDGYRVHTVTVEPLLRGAFLDVGLIGGRTRKNLAQRSDVTLLWPPPEPGGYSLIVDGSAVVTDVSDDDTETARLRVIPTRALLHREADSPSVAKGCLHDCVVFSLPA
>NZ_CP011883.2|WP_047313693.1|530434_531295_+|DUF559-domain-containing-protein
MEPFLGSEALRRGAITRNELRTRYRAVFRDVYIGRDVQLTAAAKARAAWLSTDAILAGLSAAAVLGTKWLDPAAPAEIVRADRHGQPGFVVHSYQLADDEVQLFRGMRVTTAARTAFDIGRGLHVAKAVPILDALLNATGLKPADVTAVADRHPGARGIRRLRAALELADGGAESPQETRVRLFLVGAGLPKPETQIEFRDLHIRVDMGWREWKVAVEYDGIQHWDNRYQRSWDIERIALLEAAGWTVIRVSAEMLSRRPNSIVERVKAKLRERGAYGRTRDSFRA
>NZ_CP011883.2|WP_047313694.1|528655_530281_+|chaperonin-GroEL
MAKTIAYDEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGANPLGLKRGIEKAVEKITETLLKGAKEVETKDQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDAERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIQAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVITKDETTIVEGAGDTDAIAGRVAQIRAEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPALDKLKLSGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAATGDYEDLLKAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAPAGDPTGGMGGMDF
>NZ_CP011883.2|WP_054878815.1|527849_528344_-|cupin-domain-containing-protein
MSLVVPPYPPSRYTTDEPEVSAWLKRADSPPDHETFGVRYHYLANQQATGGDYGLYRVDIAPAGGGPGPHFHRTISEAFFVLSGTMRLYDGREWQDAHQGDFLYVPPGGVHGFRNEADAAASILMLFAPGAPREAYFEGFGALADMTDDERRDWFVRHDNYWVQ
>NZ_CP011883.2|WP_082607715.1|542955_543135_-|hypothetical-protein
MRTVIAAGLLVLGGLMTTAVGVAKADEIQVEGNYSTLAACQTDGPHVEITHNGLYTHWD
>NZ_CP011883.2|WP_156406692.1|543223_544138_-|PPE-domain-containing-protein
MGFEGRPPEVTSTLMYSGPGSDSLWDAWTAWDEVADELSEAALEFQGVVRGLRTASWLGNSSDHMAAAALRISDWIHDTSKRALTTCAQAEAAAKAFDKARKGTVPPQHVDLNRQIRDELVAQNFWNMTTHHITELDVRYHKMWARNTTAMNTYARSAGEALAKLPLFTDPSGFARADPISLKPKKLGEANIPYAYMLDDPTSLKEAADKLMSVGKELKSTNNKEAPKITGVLPPAADAVSQSIAVKLNAQGAQYQAVSTKAATIYQQFVDTLKFSADIYDTTEDTNRRTLGIHSPARRGCEIL
>NZ_CP011883.2|WP_168162498.1|544893_545031_+|hypothetical-protein
MMAHFHLAKLANGAPINVRRRVTWDLRERRGRKLDLEWANRSRLL
>NZ_CP011883.2|WP_047313329.1|545274_546498_+|alkane-1-monooxygenase
MTAELRPDVAVWRDKKRYLWLIGLVPPTMLLLILPIIWGMNQVGWQAVSPALLWVGPFLVYILLPALDLKFGPDGQNPPDEVMERLERDKYYRYCTYAYLPFQYASVIVGAYLFTASDLSWLGYPGGLSWPAKVGLALSIGVLGAVGMNAAHEMGHKKEALERWLSKLTLAQSCYGHFYIEHNRGHHVRVATPEDPASSRFGETFWEFLPRSVVGGLRSAVRLEAQRARRRGRSPWNPQTYPGNDVLNAWLMSVVLWGALIAVFGPALIPLVVIQALYAWTTFETVNYLEHYGLLRQKIATGRYERCAPEHSWNSDHLVTNLFLYHLQRHSDHHANPTRRYQTLRSLDGSPNLPSGYASMITLAYFPPLWRKVMDRRVLAHYGGDIARANVQPRLREKLLATYGAAQ
>NZ_CP011883.2|WP_047313495.1|546497_546671_+|rubredoxin
MAAYQCPVCDYIYDEAKGDAREGFPPGTRWEQLPGDWCCPDCAVREKPDFQKLGELT
>NZ_CP011883.2|WP_047313328.1|546667_546850_+|rubredoxin
MSDYKLFRCVQCGFEYDEAQGWPEDGIEPGTRWDDIPEDWSCPDCGAAKADFEMVEVARP
>NZ_CP011883.2|WP_156166465.1|546846_547482_+|TetR-family-transcriptional-regulator
MSAQNDILAPVKRIPYAEASRVLLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDSVHAALDANVGNIYESFLQGFRSFFSESAADPLVISLLTGVAKPDLLQLITTDSAPMITRASARLAMAFTQSWVATSDEDAGILARAIVRLSLSYVSMPPEADHDVAADLARLMTPFAERHGVVNAP
>NZ_CP011883.2|WP_156406693.1|547678_548608_+|PPE-domain-containing-protein
MLTGQVIDHIRMAGSNAVNFENKVPPEVTSALIRSGPGTDSLLAAEISWEKVCLGLLEAEYRFRGLVLGVQEASWLGESSRRMAAEASRISGWMHNAADEAERACNQAGAAARAYCSARDSTVSLEKIRANRSARKELAIQNIYSLGAYTSEIAELDHRYHKMWSQNTYAMEVYESSVGDAVARLRPFDDPSGSVEVVSPVDLNVVDRHSVSADPTALLQAAGKLKQILGDLKFINATADPVITGVRAPAADEVSQSIASKLNAQGMQYRSVNAKANEISQQFVANLVVSASKYKVTEDANRLIILDQK
>NZ_CP011883.2|WP_054880755.1|549374_552257_-|RND-family-transporter
MTTKYANDLDTHTERPFVARMIHRLAVPIILAWLAIVVAVSVFVPSLEDVGQERSVSLSPKDAPSYIAMKKMGQAFNEGNSDSVIMIVLEGDRPLGDDAHRFYDTLIRKLRADKHVQSVQDFWGDPLTAAGAQSNDGKAAYVQLSLAGNQGEPLAQESIDAVRKIVAQTPAPPGITAWVTGASALIADMHHSGDKSMIRITATSVIVILVMLLLVYRSFITVVLLLFTVGIESAAARGVVALLGHTGLIGLSTFAVSLLTSLAIAAGTDYGIFIIGRYQEARQAGDDKETAFYTMYRGTSHVILGSGLTIAGATFCLSFARMPYFQTLGIPCAVGMLIAVAVALTLGPALLTVGSRFGLFEPKRLIKVRGWRRVGTVVVRWPLPVLATTCAIAMVGLLALPGYKTNYNDRAYLPTFIPANQGFAAADRHFPQARMKPEILMIESDHDMRNPADFLVLDRLAKGIFHVPGISRVQAITRPDGTAMDHTSIPFQISMQNAGQVQTLKYQQDRMNDMLKQADEMAKTIATMRRMHHLMTLLAENTHRMANDTVEMQQITNQLRDELANFDDFWRPIRSYFYWEKHCFDVPICWSFRSIFDALDGVDQIDEKLNTLVGDIKNMDLLMPQMLEQFPPMIESMESMRTMMLTMHSTMSGIFDQMNELSDNANAMGKAFDAAKNDDSFYLPPEVFKNADFKRAMNSFLSSDGHAARFIILHRGDPATPEGIASINAIRTAAEEALKGTPLEDAKIYLAGTAAVFKDIDEGANWDLVIAGISSLCLIFIIMLIITRAFVAAAVIVGTVALSLGASFGLSVLLWQHILGIELHYLVLAMSVIVLLAVGSDYNLLLVSRFKQEIHAGLKTGIIRSMGGTGKVVTNAGLVFAFTMASMVVSDLRVIGQVGTTIGLGLLFDTLIVRSFMTPSIAALLGRWFWWPMRVRSRPLRTPAAPVESHPDRSLVYSTR
>NZ_CP011883.2|WP_168162565.1|552253_552676_-|hypothetical-protein
MLSRIWIPLVVLVVLVVGGFVVYRVHGFFASEKRESYADSNLGSSKPFNPKEIVYEVFGPPGTVADISYFDVNSDPQRVDGAQLPWSLHMTTTLAAVMGNLVAQGNTDSIGCRITVDGVVKAERVSNEVNAYTYCLVKSA

Crispr_ID: NZ_CP011883_2

• CRISPR_ID: NZ_CP011883_2
• CRISPR_location: 947854-947936
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_2

Consensus_repeat	Method
GCGGCGCTATTCGCGCCTTAGCCGCGAC	CRISPRCasFinder

spacers of NZ_CP011883_2

>2.1|947882|27|NZ_CP011883|CRISPRCasFinder
GCTCATGTCCAATGTCGTCGCCGGCCC

CRISPR arrays and Neighbor proteins around NZ_CP011883_2

CRISPR arrays

The CRISPR arrays of NZ_CP011883_2

>merge|NZ_CP011883|2|947854-947936|CRISPRCasFinder
GCGGCGCTATTCGCGCCTTAGCCGCGACGCTCATGTCCAATGTCGTCGCCGGCCCGCGGCGCTATTCGCGCCGTAGCCGCGAC

>NZ_CP011883|2|2|947854-947936|CRISPRCasFinder
GCGGCGCTATTCGCGCCTTAGCCGCGAC	GCTCATGTCCAATGTCGTCGCCGGCCC
GCGGCGCTATTCGCGCCGTAGCCGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_156406707.1|940609_940771_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880570.1|956909_957389_-|gamma-glutamylcyclotransferase	unknown	unknown	gnl|CDD|372719
NZ_CP011883.2|WP_047313373.1|957472_958906_+|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl|CDD|236112
NZ_CP011883.2|WP_054880582.1|940224_940530_-|transposase	unknown	unknown	gnl|CDD|366690
NZ_CP011883.2|WP_054880572.1|950890_952504_-|phospho-sugar-mutase	unknown	unknown	gnl|CDD|100092
NZ_CP011883.2|WP_047313377.1|953495_954689_+|M20-family-metallopeptidase	unknown	unknown	gnl|CDD|349921
NZ_CP011883.2|WP_156406708.1|941037_941883_+|PE-domain-containing-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_168162503.1|942149_942692_+|PPE-domain-containing-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_047313372.1|958985_960743_+|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl|CDD|223651
NZ_CP011883.2|WP_168162504.1|945452_946037_+|PPE-domain-containing-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_047313379.1|950254_950878_+|uracil-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234653
NZ_CP011883.2|WP_054881073.1|952512_953319_-|purine-nucleoside-phosphorylase	unknown	unknown	gnl|CDD|236183
NZ_CP011883.2|WP_054880571.1|955914_956796_-|hypothetical-protein	unknown	unknown	gnl|CDD|380141
NZ_CP011883.2|WP_054880575.1|947103_947676_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054880576.1|946245_946545_+|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_CP011883.2|WP_054880579.1|942948_944499_-|IS21-family-transposase	unknown	unknown	gnl|CDD|226950
NZ_CP011883.2|WP_047314363.1|946613_946901_+|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|377587
NZ_CP011883.2|WP_047313376.1|954685_955855_+|amidohydrolase	unknown	unknown	gnl|CDD|349936
NZ_CP011883.2|WP_054880573.1|949267_950140_-|acid-phosphatase	unknown	unknown	gnl|CDD|309350
NZ_CP011883.2|WP_156406709.1|944768_945221_+|PE-domain-containing-protein	unknown	unknown	gnl|CDD|376422

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054880572.1|950890_952504_-|phospho-sugar-mutase	gnl|CDD|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP011883.2|WP_054880570.1|956909_957389_-|gamma-glutamylcyclotransferase	gnl|CDD|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	3.14509e-31
NZ_CP011883.2|WP_047313373.1|957472_958906_+|NAD(P)H-quinone-dehydrogenase	gnl|CDD|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
NZ_CP011883.2|WP_054880582.1|940224_940530_-|transposase	gnl|CDD|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.57806e-05
NZ_CP011883.2|WP_047313377.1|953495_954689_+|M20-family-metallopeptidase	gnl|CDD|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	5.93805e-155
NZ_CP011883.2|WP_156406708.1|941037_941883_+|PE-domain-containing-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	7.06156e-15
NZ_CP011883.2|WP_168162503.1|942149_942692_+|PPE-domain-containing-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.60961e-34
NZ_CP011883.2|WP_047313372.1|958985_960743_+|glycerol-3-phosphate-dehydrogenase/oxidase	gnl|CDD|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NZ_CP011883.2|WP_168162504.1|945452_946037_+|PPE-domain-containing-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.46466e-31
NZ_CP011883.2|WP_054880576.1|946245_946545_+|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	7.92959e-12
NZ_CP011883.2|WP_054881073.1|952512_953319_-|purine-nucleoside-phosphorylase	gnl|CDD|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	4.90097e-131
NZ_CP011883.2|WP_054880571.1|955914_956796_-|hypothetical-protein	gnl|CDD|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	2.8661e-05
NZ_CP011883.2|WP_054880575.1|947103_947676_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	9.13907e-31
NZ_CP011883.2|WP_047313379.1|950254_950878_+|uracil-phosphoribosyltransferase	gnl|CDD|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	8.05713e-108
NZ_CP011883.2|WP_054880579.1|942948_944499_-|IS21-family-transposase	gnl|CDD|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.45333e-13
NZ_CP011883.2|WP_047314363.1|946613_946901_+|WXG100-family-type-VII-secretion-target	gnl|CDD|377587	pfam06013, WXG100, Proteins of 100 residues with WXG. ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. homologs have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the pfam01580 domains in the YukA-like proteins.	5.58984e-09
NZ_CP011883.2|WP_047313376.1|954685_955855_+|amidohydrolase	gnl|CDD|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP011883.2|WP_054880573.1|949267_950140_-|acid-phosphatase	gnl|CDD|309350	pfam04185, Phosphoesterase, Phosphoesterase family. This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.	1.04432e-42
NZ_CP011883.2|WP_156406709.1|944768_945221_+|PE-domain-containing-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	5.83331e-09

Protein sequences

>NZ_CP011883.2|WP_054880575.1|947103_947676_+|PPE-family-protein
MQNFNAFPPEINASNIRGPGAEPIWIAADAWDSLAEELHAKAREWANQVSATAALFQGPAARKFVVAARRYCTWLNTHAETASDTAKYLHLTALAYERAVESMIPMASIVVNRMAAWIMKVTNLLYGQNITRIVELECEYEMMWAKNAEAMNEYQPDILDIIERAKGREIISVLPIIFSARFSDVMSAET
>NZ_CP011883.2|WP_047314363.1|946613_946901_+|WXG100-family-type-VII-secretion-target
MSSINYQFGDIDAHGATIRAQAASLEATHQAILASVRDAADFWGGQGSAACEQFISDLGRNFQMIYEQANAHGQKVQAAGNNMADTDRSVGSAWA
>NZ_CP011883.2|WP_054880576.1|946245_946545_+|WXG100-family-type-VII-secretion-target
MTARFMTDPHAMRDMARRFEVHGQTVEDESHKMWASTLNIAGAGWSGAAQATSFDTMGQMNQAFRNIVNMLHEVRDQLGAAATRYEQQEQASQQILQGS
>NZ_CP011883.2|WP_168162504.1|945452_946037_+|PPE-domain-containing-protein
MSNFNLLPPEVNVKNISGPGSNPMRTAVAAWDDLARELANAAAQWKFQLQATDAWFRGPAARKFVAAADLYNRWLNTHIETATEIAMYLNKAAYAYDIAVHSMAPTASIVANRSSAWTLKATNLLGQFTTKIMELDQAYQEMWVQNAEAMNQYQYTIFDIMARVEESRISPAPEVILDSRGRVGGFDNSEEILI
>NZ_CP011883.2|WP_156406709.1|944768_945221_+|PE-domain-containing-protein
MTYPQRGVQEGQSSVYVNGNSQSANFNAPPQWSSNTSSTDLDPSLQTNQNATRVMPGSLTLASKKMVTIADSISIANAQGASAMTKIPPPGADSVSALSARFFNARGDLYRVHTDRGADIGKRLSWSLEEAAKKYQRAESDNNESFGKIQ
>NZ_CP011883.2|WP_054880579.1|942948_944499_-|IS21-family-transposase
MSYREVSAIEIREILRLWLAGRGLREIARMSGADRKTVRRYVDRACACGLDRDGEIAQLTDGLLAAVIAGARPSRPNGKSEAWEIIAGQHEQIKEWLDDGLTVTRVHTLLGCRGVVVSYRTLHRYVTTELDFGRRKTTVRVADCDPGAEVQVDFGRLGMLTDAADGRRRVVQGLIFIAVYSRHMFVWPTYRQTLGDVIAGFEAAWAFFGGVFAVVIPDNMKAIVDRADATDPRLKDTFCEYARARGFAIDPTRIRSTKSKPRVELMVQYVRDNFFAGEDFRDLGDCRARAEYWCGKVAGMRVHSTTRLRPADVFATDELPKLKPVSEEVFDIPVWTHPKVAPDRHVQVAKALYSVPGDLVGRRLDACADARTVKLYWRDELIKIHPVMPPGRRHTDPADMPAEVSVCAMYDLNMLQRKASAHGEHVGMYAAAMLEHPLPWNKMRHVYWLLGLVRRHGAEAVDDACRRALDAKAIDAGLIERILTRGVGEQLPLLSAPPAASRFVRAATDFAVRRSS
>NZ_CP011883.2|WP_168162503.1|942149_942692_+|PPE-domain-containing-protein
MPHFNALPPEINASNIRGPGSEPIRNAQTAWNGLAEELYSTAAQWRSQVGATDALFRGPAASKFVAAAKEYNSWLYRHAGTASETAEYLHQAADAYETAVTLMVPTASIVANRAAALTMETTNLLGQFTSQIAELDGEYQKMWTTNAEAMNQYQFHIFDIMERAEKRGIIPALGMFFSPQ
>NZ_CP011883.2|WP_156406708.1|941037_941883_+|PE-domain-containing-protein
MTYPDSSLQPGDLDQLFPEQGLELLGNPDASYQANFDPSPVNLDEQLQSGFDPLSANLDLPSPGNLDPSLAGKYEPLQPDVGPSPVKLDEQLQSGFDPLSANLDLPSPGNLDPSLAGKYEPLQPDVGPSPVKLDEQLQSGFDPLSANLDLPSPENLDPSLAGKYEPLQPDLGASLSADVNAMQANPDSMADVSTKMTEIADSISIANAQKASVMTKIPAPGKDSVSALLARFFNARGQLYQVHTDRGADIGKQLSQSLKDAASAYTRTEEHNDKDFLRQLS
>NZ_CP011883.2|WP_156406707.1|940609_940771_-|hypothetical-protein
MSYREVSVIEIREILRLWLAGRGLREIARMSGADRKTVRRYMDRARACVACSR
>NZ_CP011883.2|WP_054880582.1|940224_940530_-|transposase
MPRMYSSSVRRHIVARLRSGEPVAAVADETGICQATLFRWKRQALIDAGVLDGTPSVEADELAAARKGIAQLEAELALTRDACQLLDAPEVVTPKTPTRDH
>NZ_CP011883.2|WP_054880573.1|949267_950140_-|acid-phosphatase
MSSTYRAFRLFGAVLVCGLAGCPSVPRVGLAAAALPAPAHVVIVVEENHSQANIIGNRSAPFINALAANGAMMAQSFAETHPSEPNYLALFAGDTFGVRKNLCPLNGGTLPNLGSELLAAGYTFAGFAEGLPAVGSPVCAAGKYQRKHAPWVNFSNVPATNSVPFSAFPKPGNPEGYASLPTVSFVIPNDDNNMHSGSIAVADAWLSRNLSGYANWAVANNSLLIVTWDEDDNTNRNQIPTVFYGAQVRPGTYNEQISHYNVLSTLQQMYGLPKTGNAAGAAAITDIWGG
>NZ_CP011883.2|WP_047313379.1|950254_950878_+|uracil-phosphoribosyltransferase
MDVRVIDHPLAAARLTVLRDERTGNAAFRAALRGLTLMLVYEATQDAPCETFSIRTPLTQTLGVRLARPPLLVPVLRAGLGMVDEAHAALPEARVGFVGVARDEGTHQPVPYLESLPDDLTGQPVMVLDPMLATGGSMTHTIGLLLRRQATEITVLCVVAAPEGIAAVEKTAPNARLFTAAVDEGLNEAKYIVPGLGDAGDRQFGPR
>NZ_CP011883.2|WP_054880572.1|950890_952504_-|phospho-sugar-mutase
MTPEEWIAHDPDPQTAAELAACDPEELAARFARPLRFGTAGLRGPVRGGPDAMNLAVVLRATWAVAQVLMQRTGSRPATVIVGRDARHGSPVFAAAAAEVLAAEGFSVLLLPDPAPTPVVAFAVRTTGAAAGIQITASHNPPTDNGYKVYFDGGIQIISPTDRQIETAMAAAPLADQITRKPVDPSENSATDLVDRYMQRAAAVRRGTGSVRVALTPMHGVGGAVAVETLRCAGFDDVHTVAAQFAPDPDFPTVAFPNPEEPGATDALLALAANVGADVAIALDPDADRCAVGIPTSSGWRMLSGDETGWLLGDYILSQTDSPQPGRETKIVASTVVSSRMLAAIATHYNAVHVETLTGFKWLARADANLPGTLVYAYEEAIGHCVDPATVRDKDGISAAVLVCDLVATLHQQGRSVPDMLDQLARRHGVHDVAAVSRRVADPDEAADLMRRLRAAPPSQLAGFAAAISDTTDISDALIFTGGDDDTWVRVVVRPSGTEPKLKCYVEVRCPVAGDLSSARQRAAALRDELVASVRQW
>NZ_CP011883.2|WP_054881073.1|952512_953319_-|purine-nucleoside-phosphorylase
MTEPLLDPDELARRAAQVIGERTGILEHDVAVVLGSGWSPAVAALGSPTVVLPQAELPGFTPPSAAGHTGELLSVRIGAHRVLVLAGRIHPYEGHDLRHVVHPVRTACAAGARIVILTNAAGGLRADLSVGQLVLISDHLNLTARSPLVGAQFVDLTDAYAPRLRELARDTDPALTEGVYAAQPGPHYETPAEIRMLRMLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGITGEPLSHAEVLAAGAASASRIGSLLADIIARF
>NZ_CP011883.2|WP_047313377.1|953495_954689_+|M20-family-metallopeptidase
MPTATALTSVEDAVRRRGADLVELSHAIHAEPELAFAEHRSCAKAQALVAERGFAITAPAGGLDTAFRADFGSGPLVVGVCAEYDALPEIGHACGHNIIAASAVGAALALAEVADDLGLTVALLGTPAEEAGGGKALMLQAGTFDDVAVAVMAHPGPTDIAAAHSLALSEVTVEYRGKESHAAVAPHLGVNAADAVTVAQVAIAVLRQQLGPGQLVHGMVTNGGQAINVIPGHATLQYAMRAVESDSLRELEGRMFACFAAGALATGCEYEIDHTAPAYAELKPDQWLADVCREEMRRLGREPMAPDVEARLPLGSTDMGNVTQVLPGIHPVIGVDAAGATVHQRAFASAAVGPSGDRAVVDGAIMLARTIVQLAETPDERDRVLAAQQRRRGRAAL
>NZ_CP011883.2|WP_047313376.1|954685_955855_+|amidohydrolase
MSLVDTAESWLAAHYDDLIAWRRHIHRYPELGRQEFATTQFVAERLADAGLNPKVLPGGTGLTCDLGPEHEPRIALRADMDALPLAERTGAPYASTVAGVAHACGHDAHTAILLGTAVALASVAELPVGVRLIFQAAEELMPGGAIDAIAAGVLTGVTRIFALHCDPRLEVGKVAVRHGPITSAADSIEITLYSPGGHTSRPHLTADLVYGLGTLITGLPGVLSRRIDPRNSTVLVWGAVNAGVAANAIPQTGVLSGTVRTASRQTWVDLEEIIRQSVSALLSPLAIEHTLQYRRGVPPVVNEDVSTRILTHAIEAVGPDALADTRQSGGGEDFSWYLEEIPGAMARLGVWPGAGPQLDLHQPTFDLDERALAIGLRVMVNIIEQAAAF
>NZ_CP011883.2|WP_054880571.1|955914_956796_-|hypothetical-protein
MAKELSQLLDAQGGVVTSAQALTFLTRRGLEEHVNRGALQKIWRGIYGRGEMTTALRLRGLDMAAGTTVAACLGTAAAAYGFDTEGTPDLHVLNPGGHRLRSTDGLVVHRREGAPLMLFAERPATTPAWTAIEVARALRRPRALATLDAALRSGTCTPVDLHRAVDLQSGRRGIVTVRELLGLASSLAESPMESEARLVMLDGGLPQPVLQYEIVDLSGRTWRLDFAWPEYRVAAEYDGLYWHSGRDAFLRDRRRAGALQDLCWVVVPIIAEDVRYRPGKLIRRLETALRRAA
>NZ_CP011883.2|WP_054880570.1|956909_957389_-|gamma-glutamylcyclotransferase
MPLYAAYGSNMHPEQMLKRAPHSPMAGTGWLPGWRLTFGGEDIGWEGALATVVEDPDSRVFVVLYDMTPADEMNLDRWEGSEFGVHKKIRCRVERESSDTTIDPVLAWLYVLDAWEGGLPSARYLGVMADAAEIAGAPNDYVHDLRTRPARNIGPGTTT
>NZ_CP011883.2|WP_047313373.1|957472_958906_+|NAD(P)H-quinone-dehydrogenase
MVTRIVILGGGPAGYEAALVAATTSHPQKAHVTVIDSDGIGGAAVLDDCVPSKTFIASTGLRSELRRAQRLGFDIDIDDAKISLPDIHARVKTLAAAQSADITAQLRNMGVDVIAGRGELVDPTLGLARHRIKATHSDGGPDGPVTSEHDADVVLIATGASPRILPSAAPDGERILTWRQLYDLAALPEHLIVVGSGVTGAEFVNAYTELGVPVTVVASQDHVLPYEDADAALVLEGSFAERGVRLFKNARAESVTRTETGVLVTMIDGRTVEGSHALMTIGSVPNTSGLGLERVGIELGRGNYLTVDRVSRTSVPGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSAIDNGSVSARTIMLPLQTNARAKMSEVRHGFVKMFCRPSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMAHDDLD
>NZ_CP011883.2|WP_047313372.1|958985_960743_+|glycerol-3-phosphate-dehydrogenase/oxidase
MTDPMQAPENEQTWPASALGPQQRAVAWERLGTEQFDVVVIGGGVVGSGCALDAATRGLKVALVEARDLASGTSSRSSKMFHGGLRYLEQLEFGLVREALYERELSLTTLAPHLVKPLPFLFPLTKRWWERPYMAAGIFLYDRLGGAKSVPAQKHLTRAGALRLSPGLKRSSLIGGIRYYDTVVDDARHTLTVARTAAHYGAVVRCSTQVVALLREGDRVIGVRVRDSEDGAVTEVRGHVVVNATGVWTDEIQALSKQRGRFQVRASKGVHVVVPRDRIVSDVAMILRTEKSVMFIIPWGNHWIIGTTDTDWNLDLAHPAATKADIDYILGTVNTVLATPLTHSDIDGVYAGLRPLLAGESDDTSKLSREHAVAVPAAGLVAIAGGKYTTYRVMAADAIDAAVAFVPARVAPSITEKVGLLGADGYFALINQAEHVAALQGLHPYRVRHLLDRYGALIGDVLALAADAPGLLSPIKEAPGYLLVEARYAVTAEGALHLEDILARRMRISIEYPHRGVACAREVADVVAPVLGWTAEDIDREVANYTARVQAEVLSQAQPDDVSADELRASAPEARAEILEPVPLN

Crispr_ID: NZ_CP011883_3

• CRISPR_ID: NZ_CP011883_3
• CRISPR_location: 1108170-1108261
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_3

Consensus_repeat	Method
GCGGGCCGTGTATCGGCCCGGTG	CRISPRCasFinder

spacers of NZ_CP011883_3

>3.1|1108193|46|NZ_CP011883|CRISPRCasFinder
AGGAGCTGGGCCATTCGGTCGTAGCCCTGCGACCCCAAACTTTCGA

CRISPR arrays and Neighbor proteins around NZ_CP011883_3

CRISPR arrays

The CRISPR arrays of NZ_CP011883_3

>merge|NZ_CP011883|3|1108170-1108261|CRISPRCasFinder
GCGGGCCGTGTATCGGCCCGGTGAGGAGCTGGGCCATTCGGTCGTAGCCCTGCGACCCCAAACTTTCGAGCGGGCCGTGTATCGGCCCGGTG

>NZ_CP011883|3|3|1108170-1108261|CRISPRCasFinder
GCGGGCCGTGTATCGGCCCGGTG	AGGAGCTGGGCCATTCGGTCGTAGCCCTGCGACCCCAAACTTTCGA
GCGGGCCGTGTATCGGCCCGGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_168162508.1|1113867_1114194_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379402
NZ_CP011883.2|WP_047313269.1|1101431_1104800_+|ATP-dependent-helicase	unknown	unknown	gnl|CDD|223288
NZ_CP011883.2|WP_054880508.1|1098225_1101435_+|ATP-dependent-helicase	unknown	unknown	gnl|CDD|223288
NZ_CP011883.2|WP_082607521.1|1113234_1113831_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054880504.1|1111402_1111648_-|hypothetical-protein	unknown	unknown	gnl|CDD|376574
NZ_CP011883.2|WP_168162507.1|1112520_1112961_+|PE-domain-containing-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_168162509.1|1116953_1118399_-|zinc-dependent-metalloprotease	unknown	unknown	gnl|CDD|227607
NZ_CP011883.2|WP_054880509.1|1096880_1097666_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|184875
NZ_CP011883.2|WP_047313271.1|1097738_1097951_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_082129310.1|1106962_1107679_-|sensor-domain-containing-protein	unknown	unknown	gnl|CDD|372884
NZ_CP011883.2|WP_156166234.1|1115842_1116043_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047313267.1|1106015_1106954_+|NAD(+)-diphosphatase	unknown	unknown	gnl|CDD|234699
NZ_CP011883.2|WP_156406717.1|1108340_1110485_+|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|223288
NZ_CP011883.2|WP_047313273.1|1095705_1096560_+|TIGR02569-family-protein	unknown	unknown	gnl|CDD|131620
NZ_CP011883.2|WP_054880505.1|1110964_1111234_+|WhiB-family-transcriptional-regulator	unknown	unknown	gnl|CDD|376791
NZ_CP011883.2|WP_054880507.1|1104903_1105974_+|potassium-channel-protein	unknown	unknown	gnl|CDD|367001
NZ_CP011883.2|WP_047313272.1|1096575_1096878_-|DNA-methyltransferase	unknown	unknown	gnl|CDD|226219
NZ_CP011883.2|WP_047313266.1|1107887_1108142_-|mycoredoxin-Mrx1	unknown	unknown	gnl|CDD|131255
NZ_CP011883.2|WP_047313262.1|1116057_1116915_-|cyclodehydratase	unknown	unknown	gnl|CDD|274832
NZ_CP011883.2|WP_054880499.1|1114406_1115741_-|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl|CDD|223733

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_168162508.1|1113867_1114194_+|helix-turn-helix-domain-containing-protein	gnl|CDD|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.3265e-07
NZ_CP011883.2|WP_047313269.1|1101431_1104800_+|ATP-dependent-helicase	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	6.26253e-104
NZ_CP011883.2|WP_054880508.1|1098225_1101435_+|ATP-dependent-helicase	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.16107e-60
NZ_CP011883.2|WP_082607521.1|1113234_1113831_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.4492e-30
NZ_CP011883.2|WP_054880504.1|1111402_1111648_-|hypothetical-protein	gnl|CDD|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	0.00114679
NZ_CP011883.2|WP_168162507.1|1112520_1112961_+|PE-domain-containing-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	7.48744e-11
NZ_CP011883.2|WP_168162509.1|1116953_1118399_-|zinc-dependent-metalloprotease	gnl|CDD|227607	COG5282, COG5282, Uncharacterized conserved protein [Function unknown].	1.5079e-169
NZ_CP011883.2|WP_047313262.1|1116057_1116915_-|cyclodehydratase	gnl|CDD|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	7.21573e-05
NZ_CP011883.2|WP_082129310.1|1106962_1107679_-|sensor-domain-containing-protein	gnl|CDD|372884	pfam14032, PknH_C, PknH-like extracellular domain. This domain is functionally uncharacterized. It is found as the periplasmic domain of the bacterial protein kinase PknH. The domain is also found in isolation in numerous proteins, for example the lipoproteins lpqQ, lprH, lppH and lpqA from M. tuberculosis. This family of proteins is found in bacteria. Proteins in this family are typically between 214 and 268 amino acids in length. There are two completely conserved C residues that are likely to form a disulphide bond. A second pair of cysteines are less well conserved probably form a second disulphide bond. It seems likely that this domain functions to bind some as yet unknown ligand.	2.2646e-09
NZ_CP011883.2|WP_054880509.1|1096880_1097666_-|alpha/beta-hydrolase	gnl|CDD|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	2.02538e-16
NZ_CP011883.2|WP_047313267.1|1106015_1106954_+|NAD(+)-diphosphatase	gnl|CDD|234699	PRK00241, nudC, NAD(+) diphosphatase.	1.11865e-124
NZ_CP011883.2|WP_156406717.1|1108340_1110485_+|UvrD-helicase-domain-containing-protein	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	8.32415e-118
NZ_CP011883.2|WP_047313273.1|1095705_1096560_+|TIGR02569-family-protein	gnl|CDD|131620	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein. This protein family is found, so far, only in Actinobacteria, including as least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica, always in a single copy per genome. The function is unknown. [Hypothetical proteins, Conserved].	8.69981e-138
NZ_CP011883.2|WP_054880505.1|1110964_1111234_+|WhiB-family-transcriptional-regulator	gnl|CDD|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	8.12815e-15
NZ_CP011883.2|WP_054880507.1|1104903_1105974_+|potassium-channel-protein	gnl|CDD|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	2.43474e-24
NZ_CP011883.2|WP_047313272.1|1096575_1096878_-|DNA-methyltransferase	gnl|CDD|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	3.65241e-31
NZ_CP011883.2|WP_047313266.1|1107887_1108142_-|mycoredoxin-Mrx1	gnl|CDD|131255	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.	1.82232e-34
NZ_CP011883.2|WP_054880499.1|1114406_1115741_-|AarF/ABC1/UbiB-kinase-family-protein	gnl|CDD|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	1.30786e-128

Protein sequences

>NZ_CP011883.2|WP_047313266.1|1107887_1108142_-|mycoredoxin-Mrx1
MTNAALTIYTTSWCGFCVRLKTALKANGISYDEVDIDHDASAAEFVGSVNGGNRTVPTVKFADGSTLTNPSAGAVQAKLAEITG
>NZ_CP011883.2|WP_082129310.1|1106962_1107679_-|sensor-domain-containing-protein
MKPTGSTRQAVSIPASWLTRRLSLIDKAFNGRYVFFVCGLAIVLSACSHPSAPAKPTTAASRVDAKSLIISVADVIRIANFADLTPQTMADLRQPSAGNMNAPGPCRAVGNSVFTFAGGWTQFRGVSYSGTTDDLEPGGMAPIDQVSQAVAVYPNDGAARVALDQLATSLTQCAALHDSAYDFALERPDPATLRLSSVGWSHQYHVKSSVLMSIGVLGLEPADEIAGAVLQAISDRID
>NZ_CP011883.2|WP_047313267.1|1106015_1106954_+|NAD(+)-diphosphatase
MSVDFQLRNVPLLSRVGADRADHLRTDVEAATAGWADAALLRVDSRNQVLVAGGRVVLGAAAGLADKPPPEAVFLGRIEGGRHVWAVRAALEAPADPEVETDVVNLRSLGKVFDDTSSQLVSSATALLNWHDSARFSPVDGSPTKLARAGWSRVNPVTGHEEFPRIDPAVICLVHDGGDRAVLARQAVWPERMFSLLAGFVEAGESFEVCVAREIREEIGLSVRDVRYLGSQPWPFPRSLMVGFHALADPDQDFSFNDGEIVEAAWFTRDEVRTALDAGDWTSASTSKESKLLLPGSISIARVIIESWATLD
>NZ_CP011883.2|WP_054880507.1|1104903_1105974_+|potassium-channel-protein
MRSGRLRQRGGLYKTLAAQPGHLLVGVLRIPEVHSSPVRVITRRMAIALVVLFAATLAVYLVRSGYRDVRGDGLTFLDCLYFAAVSLSTTGYGDITPYTVAARLVNTVVFTPLRIAFLAVLVGTTLEVLSERSRQGWKIQRWRNKVRNHTIVIGYGTKGKTAVAARLSDEAAQGEMVVVDTDRTALEHAATAGLVTVHGDATKSDVLRLAGAQHASSIVVATGRDDTAVLVTLTARELSPNAKIVASIREAENQHLLQQSGADLVVVSSATAGRLLGLATTTPSVVEMIEDLLTPHAGLAIAEREVEQIEVGGSPRHLRDIVLGVVRDGHLLRIGAPEVDAIEASDRLLYVRHAAH
>NZ_CP011883.2|WP_047313269.1|1101431_1104800_+|ATP-dependent-helicase
MSPRYSPAELACTLGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPSQVLGLTFTRKAASQLLRRVRSRLARLAGIGPGSPASGWGYLPLVGAYSQASPAVPAAVGPVVSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQLAFDVVNGYRGELNTDKTPATVTSMVLRLWGQLAEHLVDTQQLRDTHVELERLVHTLPAGPYQRDRGPSQWLLRMLATQTERAALVPLLDALAERMRAAKVMDFGVQMACAARLAATFPQVGQDLRSRYRVVLLDEYQDTGHAQRVALSGLFGGGGNDGDDELALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGSPAPVLELRTSWRNPPRALHVANAISAEARRRSVAVRALRSRPDAPSGAVRAALLPDVRAEREWITDHISAHYQRAEADGVDPPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSIPEVADVVAMLRLVADPTAGAAALRVLTGPRWRLGGRDVAALWRRALALGGGRCGEARSPESIAMAAGPDADTACLADALGDPGPASSYSVVGYQRICALAVELTALRGQLCHSLPDLVAEVRRVLGVDCEVRAASTASPAQLPGAWAGAEHLDVFADVVAGYAERASATTSETTVSAAASVAGLLAYLDVAEVVEKGLPPAQLVVARDRVQVLTVHAAKGLEWQVVAVAHLAGGVFPSTASKATWLTDAAELPPLLRGDRSSAGTLGIPVLDTSDVTNRKQLSDKISTHRHQLEQRRVDEERRLLYVGITRAEDTLLVSGHHWGSTGIKPRGPSDFLCELKDIIDRSAAAGDPCGVVEQWAPAPADGEQNPLRDNVVEAVWPADPLAGRRGDVEHGAALVVAAMSDDMAHPGTDIEGWAADVDALLAERSRAGRRLARTLPSQVSVTGLVDLARDPTGAARRLIHRLPTRPDPHALLGNAFHAWVQRFYGAERLFDLADLPGAADSDVGDTQELAALQAAFGRSQWATRTPVAVEVPFEMPIGDTVLRGRIDAVFGDPDGGITVVDWKTGEPPRGPKAMRQAAVQLAVYRLAWAALCGCPESSVRAAFYYVRSGVTVIPDELPDATELAGLLGDPAGSCAADV
>NZ_CP011883.2|WP_054880508.1|1098225_1101435_+|ATP-dependent-helicase
MSYTWGGETRAVLEPGARGLIRILGGPGTGKSSLLVGAAVAHIGAGVEPESVLLLTGSGRLGIPARSALTTALLRSRTTGRCRAAVCEPLVRTVHSYAYAVLRRAAERAGDAPPRLVTSAEQDAIIRELLAGDLADGPHAATIWPAHLLPALSTAGFAIELRNLLARCAERGVDALELERLGRVCRRPEWTAAGQFAKQYEQVMLLRAAVGTAAPQATTPALGAAELVGAALEAFAVDPELLAAERTRVRLLLVDDAQQLDPQAARLVRVLAAGTELALVAGDPNQAVFSFRGGEPAGLLADDAPSVTLTASHRCAPAVARAVSGVACRLPGGIGGRQIDGTGAEDGSVTVRLAASAHAEASIIADTLRRAHLIDGVPWSQMVVIVRSVPRAGARLPRGLAAAGVPVAVPAVRGPLSAEPVAQALLTVLAATAAGLDGEQALALLTGPIGRVDPVSLRQLRRSLLHGNPDRRWANFGDLLVEALFPASGWGHLPLAGEYPHAGAPVSGAQSGPLQRVRAVLDAAAGCHRDGKDPRYTLWAAWHRSGLQHRLLTASERGGPAGAQATRDLETVTALFDITDHYVCHTSGASLRGLVEHVAALQLPTVSREPVTTTEQVRVLSAHAALGHEWDVVVIAGMQDGLWPNTVPRGGVLGTQRLLDVLDGVTEDASMRAPLLAEERRLLVAAMGRARRRLLVTAVDSDTDGPGLGAALPSAFFYEIAKWATSDSDPEVAQPVSSPRVLSAAALVGRLRGVVCAPDGAVDDAARACAATQLARLANAGVPGADPTGWHGLIPLSSSDRLCGDNDLVTLTPSTLQTLNDCPLRWLAERHGGTNARDLRSAIGSVLHALIAEPDKSESQLLAELDRAWQHLPFDAQWHSVNELARHRAMIQTFVEWRAQTRHELTEVGVEVDVDGMLGDPRESEHQAGDARLRGRVDRLERDAAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVADGMFSAGPASMEPGGARLVYLGRTGPAGAVEREQDPLTPADRDHWRNVVRQAANATAGPQFIARRNDGCAHCPIRPCCPAHSEHVEGAAL
>NZ_CP011883.2|WP_047313271.1|1097738_1097951_-|hypothetical-protein
MKDVKGAVPDSEVPEADALEQHLPIDFDDEAGLDTTYLSGDAKDQDANEADVLDQAFVVPAPDDDWDAHR
>NZ_CP011883.2|WP_054880509.1|1096880_1097666_-|alpha/beta-hydrolase
MTTDLHVHRYGPSGPVRMLAIHGLTGHGQRWQHLAEYVPEIAVAAPDLVGHGRSSWAAPWTIDANVSALGAVLDDEADAPVLVVGHSFGGAIALHLAVARPDQVAALLLLDPAVGLDGAWMREIAEAMFCHPDYPDVTQARVEKSLGSWADVDPALLDAELDEHLVKLTSGRYGWRVSMPAIMSYWSELARDVVLPPAGTTTTLVRATRTSPPYVSDQLIARLQQGLGSDFELLDFDCDHMVSHARPAEVAAVIRKQLETR
>NZ_CP011883.2|WP_047313272.1|1096575_1096878_-|DNA-methyltransferase
MPPVTDDQVERVRSLVAAIPPGWVATYGDIASVAGLSSPRIVGWIMRTDSSDLPWHRVITASGRPARHLTTRQLELLRAEGVLAVDGKVALREVRYQFPG
>NZ_CP011883.2|WP_047313273.1|1095705_1096560_+|TIGR02569-family-protein
MTVEPPPEHVLSAFGLTGVQPVPLGASWEGGWRCGEVVLSMVADNARAAWSARVRETLFVDGVRLARPVRSTDGRYVVSGWRADTFVAGTPEPRHDEVISAAVRLHEATGKLERPRFLTQGPTAHWADVDIFIAADRAAWEDRPLQSVPPGAWAAPPTADGQRSIDLINQLASLRKPTKSPNQLVHGDLYGTVLFVGTAAPGITDITPYWRPASWAAGVVVVDALSWGEADDGLIERWNALPEWPQMLLRALMFRLAVHALHPRSTAEAFPGLARTAALVRLVL
>NZ_CP011883.2|WP_156406717.1|1108340_1110485_+|UvrD-helicase-domain-containing-protein
MPMVADSLTAGLDDEQCEAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVGTGHVAAGQVLAVTFTQRAAGEMRSRLRALGAAAQDGSGVGAVQALTFHAAAHRQLRYFWPRVIGDTGWQLLDSKFAIVARAASRARLHVGTDDVRDLAGEIEWAKASLIGPEEYVAAAAAAGRDTPLDAAQTASVYAAYEALKARGDSGKGGNGLRGVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVVDEYQDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRSTPQVVSLANQVIAAARGRVAGSKLQLSGQREPGPAASFHEHSDEPAEAAAVAASIARLIESGTPPSEIAVLYRVNAQSEVYEEALTEAGIAYQVRGGEGFFNRQEIKQALLALQRSAERSSETGPAGSLSEVVHGVLEPLGLTAEQPVGTRARDRWEALTALAELVDDEVAQRPQLDLPGLLAELRLRADARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGADSEPVEEERRLLYVGITRARVHLALSWALSRTPGGRQSRKPSRFLNGIAPQTRQDPAPSRSRRNRAATSRCRICNNHLTTPAAVMLRRCETCAADIDEELLLQLKTWRLGTAKEQNVPAYVVFTDNTLIAIAELLPADEAALIAIPGIGARKLEQYGSDVLQLIRGRTS
>NZ_CP011883.2|WP_054880505.1|1110964_1111234_+|WhiB-family-transcriptional-regulator
MSALTVPKQTLPVLPCHVGNPDLWFAETPADLERAKTLCASCPIRRQCLAAALERAEPWGVWGGEIFDRGLVVNRKRPRGRPRKDGVAA
>NZ_CP011883.2|WP_054880504.1|1111402_1111648_-|hypothetical-protein
MTRCRTQLIVDRFHLLKRANQTVEAVRRRTTWESRGRRGRKADPNGDILAAWIAKELLRDVLACTATGALRYDITTAVYRF
>NZ_CP011883.2|WP_168162507.1|1112520_1112961_+|PE-domain-containing-protein
MFKPTAPSLESDTYEDLGGSNQRFSAGWSDSPFASQELNQPFLSNVNAVQINTDALAEVSTKMVRVADGISRVNAQRASVITKIPPPGKDSVSALLARVFNARGEMYQVHTDLGAEIGKQFSWGLKDAASKYTQAEERNRLEFCRH
>NZ_CP011883.2|WP_082607521.1|1113234_1113831_+|PPE-family-protein
MPNFNALPPDVNVLSIRGPGSRPIRTAVEAWNQLAEQLINLAVQWNTRASETEGLFQGPAANEFRAKAGEYYNWLMQHVNTAHETAAYLHQAGQAYDAAVRSMVPYTTIAMNRTARLVLKATNLLGQFTTKISELDDEHQEMWAKNAEAMNTYQYAIFDITRRVQASNITEAPLILAKPSKPSIIFDDRENLHISESL
>NZ_CP011883.2|WP_168162508.1|1113867_1114194_+|helix-turn-helix-domain-containing-protein
MAADGVWKFGVSEGRSVVGSPYRRYRTLARSWPPNISGPRPRLSLQERIEIQAGVHAQESLRSLGRRLGRPASTIKREIDSNCELRNRHTGRKSGYRRKEAFGARQSG
>NZ_CP011883.2|WP_054880499.1|1114406_1115741_-|AarF/ABC1/UbiB-kinase-family-protein
MDDECVADIKRGQAARNAKLASIPVGIAGRAALGLGKRLTGKSKEEVNAELMEKAAHQLFSVLGELKGGAMKVGQALSVMEAAIPEEYGEPYREALTKLQKDAPPLPANRVHRVLDAQLGTKWRDRFSSFNDTPVASASIGQVHKAVWSDGREVAVKIQYPGADEALRADLKTMQRMVGVLKQLSPGADVQGVVDELVERTEMELDYRLEADNQRAFAKAYQGDPRFLVPHVVASAPKVVIQEWIDGVPMAEIIRNGTAAQRDLVGTLLIELTFDAPRRLEMLHGDAHPGNFMLLPDGRMGVIDFGAVAPLPGGFPVELGMSIRLARDKNYDLLLPTMEKAGLIQKGQQVSVRDIDEMMRQYVEPIEVEVFHYTRKWLQRMSLDRSVSQIRTARQLDLPAKLALPMRVIASVGAILCQLDAHVPIKTLTEELVPGFAEPDTAVV
>NZ_CP011883.2|WP_156166234.1|1115842_1116043_+|hypothetical-protein
MSEGWYRKAMAAKQTQHDAADALFRAIIETLDKHRNDRTLTERVLDDLARAYASISTNVPDQGRQG
>NZ_CP011883.2|WP_047313262.1|1116057_1116915_-|cyclodehydratase
MPQVEPSLYALDPAMPVLLRPDGAVQVGWDPRKAVLVRPPCGLTAAELAALLRSMRSPTPIAELQRQAGGRGSTDPDGVANLVTQLVGAGVATRGCRPSRGRAASIRVHGRGPLSDLLVEALRCSGARIAHSSQSHAAVTSAVDLVVLSDYLVADPRMVRDLHSRGVPHLPVRVRDGTGLVGPLVIPGVTSCLACADLHRSDRDAAWPAIAAQLRDTIGVADRATLLATAALALSQVNRVIAAVRGQEPVPDPGPPSALNATLEFDLGAGSIVARQWTRHPLCSC
>NZ_CP011883.2|WP_168162509.1|1116953_1118399_-|zinc-dependent-metalloprotease
MSTVDSVANPPFGFSSGDDSHHDESGRDESGRDQHGKNNPDSHASASDPSASFGMSGDFGMADLGQIFTQLGQMFTSAGTAMTADKQPGPVNYELARRVASSSIGFVAPIPATTNSAIGDAVHLAETWLDGVTALPAGTTKAEGWTPDDWVNNTLETWKRLCDPMAQQISTVWAASLPEEAKSMAGPLLSMMSQMGGMAFGSQLGQAFGRLSREVLTSTDIGLPLGPKGVAAILPQAVESFADGLEQPRSEILTFLAAREAAHHRLFSHVPWLASQLLGAVEAYAAGMKIDMSGIEELARDFNPASLSDPAAIEELLGQGVFEPKATPAQTQALERLETLLALIEGWVQVVVTAALGDRMPSAAALGETLRRRRASGGPAEQTFATLVGLELRPRKLREAAALWERLTQAVGADARDAVWQHPDLLPSGEDLDDPAGFIDRIIGGDTSGIDEAFSDLEAELKRDRGNPGGADPGSGGPVDN

Crispr_ID: NZ_CP011883_4

• CRISPR_ID: NZ_CP011883_4
• CRISPR_location: 1237044-1237122
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_4

Consensus_repeat	Method
CCGGGCGCAGCGGGTCGTCACCATC	CRISPRCasFinder

spacers of NZ_CP011883_4

>4.1|1237069|29|NZ_CP011883|CRISPRCasFinder
GTCACGTGACGATCGCAAGCTCGGCGAAA

CRISPR arrays and Neighbor proteins around NZ_CP011883_4

CRISPR arrays

The CRISPR arrays of NZ_CP011883_4

>merge|NZ_CP011883|4|1237044-1237122|CRISPRCasFinder
CCGGGCGCAGCGGGTCGTCACCATCGTCACGTGACGATCGCAAGCTCGGCGAAACCGGGCGCAGCGGGTCGTCACCATC

>NZ_CP011883|4|4|1237044-1237122|CRISPRCasFinder
CCGGGCGCAGCGGGTCGTCACCATC	GTCACGTGACGATCGCAAGCTCGGCGAAA
CCGGGCGCAGCGGGTCGTCACCATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_082607535.1|1240441_1241020_-|NADH-quinone-oxidoreductase-subunit-NuoI	unknown	unknown	gnl|CDD|235637
NZ_CP011883.2|WP_054880449.1|1226919_1228035_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047313187.1|1223722_1224706_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP011883.2|WP_054880447.1|1230955_1231438_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880446.1|1232425_1233697_+|DUF58-domain-containing-protein	unknown	unknown	gnl|CDD|224635
NZ_CP011883.2|WP_054880443.1|1237439_1239344_-|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl|CDD|235836
NZ_CP011883.2|WP_054881041.1|1231446_1232418_+|MoxR-family-ATPase	unknown	unknown	gnl|CDD|223786
NZ_CP011883.2|WP_054880436.1|1248140_1248827_-|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl|CDD|181115
NZ_CP011883.2|WP_054880448.1|1228034_1229201_-|phosphotransferase-family-protein	unknown	unknown	gnl|CDD|225714
NZ_CP011883.2|WP_054880437.1|1246818_1248141_-|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl|CDD|180385
NZ_CP011883.2|WP_054880445.1|1233698_1234148_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880440.1|1242294_1244712_-|NADH-quinone-oxidoreductase-subunit-G	unknown	unknown	gnl|CDD|236118
NZ_CP011883.2|WP_054880444.1|1234156_1235755_-|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl|CDD|235603
NZ_CP011883.2|WP_054880439.1|1244708_1246043_-|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl|CDD|131014
NZ_CP011883.2|WP_054880441.1|1239650_1240445_-|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl|CDD|235844
NZ_CP011883.2|WP_054880438.1|1246042_1246822_-|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl|CDD|181024
NZ_CP011883.2|WP_054881042.1|1229996_1230959_+|DUF4129-domain-containing-protein	unknown	unknown	gnl|CDD|379261
NZ_CP011883.2|WP_054880450.1|1224700_1226047_-|flavin-monoamine-oxidase-family-protein	unknown	unknown	gnl|CDD|224152
NZ_CP011883.2|WP_047313171.1|1240991_1242212_-|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl|CDD|235692
NZ_CP011883.2|WP_054880442.1|1239354_1239654_-|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl|CDD|180218

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_082607535.1|1240441_1241020_-|NADH-quinone-oxidoreductase-subunit-NuoI	gnl|CDD|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	4.14239e-81
NZ_CP011883.2|WP_047313187.1|1223722_1224706_+|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.18894e-26
NZ_CP011883.2|WP_054880438.1|1246042_1246822_-|NADH-quinone-oxidoreductase-subunit-NuoE	gnl|CDD|181024	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE.	2.36521e-81
NZ_CP011883.2|WP_054880446.1|1232425_1233697_+|DUF58-domain-containing-protein	gnl|CDD|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.46947e-51
NZ_CP011883.2|WP_054880443.1|1237439_1239344_-|NADH-quinone-oxidoreductase-subunit-L	gnl|CDD|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP011883.2|WP_054881041.1|1231446_1232418_+|MoxR-family-ATPase	gnl|CDD|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.2203e-97
NZ_CP011883.2|WP_054880436.1|1248140_1248827_-|NADH-quinone-oxidoreductase-subunit-C	gnl|CDD|181115	PRK07785, PRK07785, NADH dehydrogenase subunit C; Provisional.	4.88244e-158
NZ_CP011883.2|WP_054880448.1|1228034_1229201_-|phosphotransferase-family-protein	gnl|CDD|225714	COG3173, COG3173, Predicted aminoglycoside phosphotransferase [General function prediction only].	3.59912e-67
NZ_CP011883.2|WP_054880437.1|1246818_1248141_-|NADH-quinone-oxidoreductase-subunit-D	gnl|CDD|180385	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D.	0
NZ_CP011883.2|WP_054880440.1|1242294_1244712_-|NADH-quinone-oxidoreductase-subunit-G	gnl|CDD|236118	PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated.	0
NZ_CP011883.2|WP_054880444.1|1234156_1235755_-|NADH-quinone-oxidoreductase-subunit-NuoN	gnl|CDD|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	1.44366e-176
NZ_CP011883.2|WP_054880439.1|1244708_1246043_-|NADH-quinone-oxidoreductase-subunit-NuoF	gnl|CDD|131014	TIGR01959, NADH-quinone_oxidoreductase_subunit_F, NADH-quinone oxidoreductase, F subunit. This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport].	0
NZ_CP011883.2|WP_054880441.1|1239650_1240445_-|NADH-quinone-oxidoreductase-subunit-J	gnl|CDD|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	6.35527e-63
NZ_CP011883.2|WP_054881042.1|1229996_1230959_+|DUF4129-domain-containing-protein	gnl|CDD|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	5.20499e-08
NZ_CP011883.2|WP_054880450.1|1224700_1226047_-|flavin-monoamine-oxidase-family-protein	gnl|CDD|224152	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism].	8.65767e-141
NZ_CP011883.2|WP_047313171.1|1240991_1242212_-|NADH-quinone-oxidoreductase-subunit-NuoH	gnl|CDD|235692	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH.	3.57809e-164
NZ_CP011883.2|WP_054880442.1|1239354_1239654_-|NADH-quinone-oxidoreductase-subunit-NuoK	gnl|CDD|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	4.35885e-45

Protein sequences

>NZ_CP011883.2|WP_054880444.1|1234156_1235755_-|NADH-quinone-oxidoreductase-subunit-NuoN
MNLPAPSIAYFLLCPMLIVFSVAVAGVLAEAFLPRRIRYGAQVTLVLGGLVAAFIAVVVVARSIPASGRTAVLGAIAIDRPTLFLQGTVLLVAMMAVIFIAERSATGQASKSKVAVGAGTTGNTGGLDSFTPQASAVPGSDAEREAERAGVAQTELFPLAMLAVGGMMVFPASNDLLTMFVALEVLSLPLYLMCGLARHRRLLSQEAAMKYFLLGAFSSAFFLYGVALLYGATGTLTLTSTRDALVTRSDNSMALVGVALVSVGLLFKVGAVPFHSWIPDVYQGAPTPITGFMAAATKVAAFGALLRVVYVALPPLHDQWRPVLWAISILTMAVGTVTAVNQTDVKRMLAYSSVAHVGFILTGVIADSPAGLSATLFYLVAYSFSTVGAFAVVGLIRNAEGVEDADLSHWAGLGQRSPIVGVMFSMFLLAFAGIPLTSGFVSKFAVFKAAAQGGAVPLVIIGVISSGVAAYFYVRVIVLMFFTEASDETPQVVEPGILSKVAIAVCAAVTVALGIAPQPLLDLADRAAQLVH
>NZ_CP011883.2|WP_054880445.1|1233698_1234148_+|hypothetical-protein
MTSIPRPATRILSAVFGLLMVGSAVVGSDGLAAVAAAVAMLGVGVATVYRPAATLAVLLSVCTIVISNPSQALAALSGLCAAAYLVFRYAAGTPVAGVMASWPTIIAAVGFTFVGLVATSFPLQLPWLPLAAPLAVLAIYVLATRPFMG
>NZ_CP011883.2|WP_054880446.1|1232425_1233697_+|DUF58-domain-containing-protein
MIEIREVELRWRASRLTRSIATCAGAALAIAVIGSRWQLIAFAAPLLGVLCSISWQRPVPKIQVHGEPDSQRCFENEQARLTVWATQENSAESGPVAVELSVFAVAGMRLEVVDSESRQVVAAVAERWGRYPIRARVNVVARGGLLTGTGTVDAAFVVVFPLTPPQSTPIPRTELLDRLGAHLTRYIGPGVEYADIRPYVSGDQLRAVNWPVSARRGQLHITQRLTDRAADVVVLIDTYRQPAGPATDATERVVRGAAQVVQTALRHGDRAGIVALGGNRPRWLGADIGQRQFYRVLDTVLGAGDQFENTTGTLAPRAAVPAGAIVVAFSTLLDTEFALALIDLRKRGHVVVAVDVLGSSPFEGEHDPLVVRMWALQRSSMYRDMATVGVDVLSWRGDRGLEQSMGVLPHRRHRMPGPPRGKH
>NZ_CP011883.2|WP_054881041.1|1231446_1232418_+|MoxR-family-ATPase
MSAGKTTAHCEAVLDEIERVVVGKRDALTLILIAVLARGHILIEDLPGLGKTLIARSFAAALGLRFTRVQFTPDLLPADLLGSTIYDMQSGRFAFRSGPIFTNLLLADEINRTPPKTQAALLEAMAEGQVSIDGETHKLPTPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYLSERDETSMLRRRLERGSAEPTVNQVVDVRDLLAMRESVEQVTVHEDVLHYVVSLATATRHHPQIAVGASPRAELDLVQLARARALLLGRDYVIPEDVKALAATTVAHRITLRPEMWVRKIQGADVIGELLRRLPVPRAVRSPGEAG
>NZ_CP011883.2|WP_054880447.1|1230955_1231438_+|hypothetical-protein
MKRLISLGISLIVGVELLALVMQDRRFVLAGAGVALAVVLLNIRRHVGHQTEPELDGEPDDLGDALRRWLSTTETTIRWSESTRADWDRHLRPMLARRFETATGQRQAKDPMTFHASGRMLFGAELWEWVNPNNITRTGDREPGPGRATLEKILQRLEQV
>NZ_CP011883.2|WP_054881042.1|1229996_1230959_+|DUF4129-domain-containing-protein
MPGIEPGIDRPTRRVVVLIVLLILVAAALRGYLPVHPRELSAEPGSSLPATILVVAALAVAVALLVIAVIARLREPPALAPSAGELSDTLGGGTARPSWRVLLIGLAVIVAWLLVAIFLSRLFALHNVNPSASIPDSSAPPVVHDTGSPPKQPNNDAGDMVGILLASTVLLFLMIVVAAAITSRRRWRAAQKLRPATIGDDDVASRAPAKRSELLARAAELGLAAMSDLTREPRQAIIACYAAMERELANVPGAVPQDCDTSTEVLARAVEHHALHADNAVELVKLFEEARFSQHVMNERHREVAVQALRLVLTELRSPA
>NZ_CP011883.2|WP_054880448.1|1228034_1229201_-|phosphotransferase-family-protein
MANEPAVRAVDRLQRSSRDVTTLPAVLSQWLSTLLPGGPDPQRGVPDVIVESGVDATGMSSETIVVIIRWQQQGQPEQQKLVVRMAPTPDDVPVFPSYRLDYQFEVMRLVGDLTDVPVPQVRWIETTGDVLGTPFFVMDYVDGVVPPDVMPYTFGNNWFADAPAERQRELQDATVAVLATLHSIPNVENTFAFLSEGRSGDTALHKHFSWVRSWYDFAVPDIGRSPLLERTFEWLQEHWPNEAGAREPVLLWGDARVGNVLYRDFAPVAVLDWEMVTLGPRELDVAWMIYAHLVFQELAGLATLPGLPGVMREDDVRATYQRLTGIEVGDLHWFYVYSGVMWACVFMRTGARRVHFGETEKPDDVESLFYHAGLMRRLIGEDLIGEDH
>NZ_CP011883.2|WP_054880449.1|1226919_1228035_-|hypothetical-protein
MLGPLDEFPVHQVPQPIAWPGSSDRNFYDRSYFNAHDRTGNIFLISGIGYYPNLGVKDAFVLIRRADTQTAVHLSDAVDSDRLHQCVNSYRIEVIEPLRKLRLILDETEGIAADLTWQGLFNAIQEQPHILRSGNRVTLNAQRFAQLGTWSGRIVVDGQEIAVDPTTWLGSRDRSWGIRPIGEPEPAGRPADPPFEGMWWLYMPMAFADFAVVLIIQEEPNGFRSLNDCTRVWRDGRVEQLGWPLVTIHYRSGTRIPTGATIDATRADGTGVHFDVESKLPVPIHVGGGYGGDSDWLHGTWKGEKFVERLTYDMTDPAIVARSGFGVIDHVGRAVCRDGDAVPVEGWGLYEHGALGRHDPSGFTDWLTVAP
>NZ_CP011883.2|WP_054880450.1|1224700_1226047_-|flavin-monoamine-oxidase-family-protein
MPNPPWTVDVVVVGAGFAGLAAARELTRLGHEVLVLEGRDRVGGRSFTGSVAGLPADLGGAFVGPTQDAVLTLASELQVPTTSTYRDGKNLIQWRGCTRPYHGSIPKLSLIGLLDVGRLRWQFDRIARDVPVAAPWDARRARQLDALSLGAWLQSVHATASSRDLLAIMARVTWGCEPDDVSMLHAARYAHAAGGLDRLLDVENGAQQDRFPGGTQRIAEAAAAQLGNRVVLNSPVRRIARHGAGVTVTADDGWAEARFVIVAIPPAHRAAIEFTPPLPPEYEQLAKHWPQGRLSKAYAAYSTPFWRANGFSGMALSDEGPVFITFDVSPPGEGPGILMGFTDARAFDTLPTEQRRRDALRCFASLFGDDALYPLDYVDHRWGAEEFAPGGPTAAVPPGSWTRYGQWLREPAGPIHWAGTETADKWTGYLDGAIRSGQRAAAEIAALL
>NZ_CP011883.2|WP_047313187.1|1223722_1224706_+|alpha/beta-hydrolase
MTARRPPRCSTINPTTDLLPDALPPSRALTVRAVDGTPLHTEVFGPADGYPIVLTHGFTCAIRAWAYQITDLAADYRVIAFDHRGHGRSGAPPRGAYSLKHLASDLDSVLEATLAPHERALLAGHSMGGITIAAWSECYRDKVHRRAGAVALINTSTGDLVRKMKLLPVPRELSPARVMAGRALINVFGGFPLPGAARIPSRYLVARLAVGSGADPSVARFIYELFAQTSAAGRGGCARMLVDALGDRYLDLDGLTAPTLVIGSEHDRLTPISQSRRIARTAPNVVGLVELPGGHCSMLEQHQEVNRQLRTLAASVARRPRVRRVIS
>NZ_CP011883.2|WP_054880443.1|1237439_1239344_-|NADH-quinone-oxidoreductase-subunit-L
MTSFLGTQYTWLLVALPLAGATILLFGGRRTDAWGHLLGCATAVASFGVGATLLADMLGRAGDDRVIHQKLFSWIPVGGLQVDFGLQIDQLSMCFVLLITGVGSLIHIYSIGYMAEDPDRRRFFGYLNLFLASMLLLVVADNYLVLYVGWEGVGLASYLLIGFWYHKPSAATAAKKAFVMNRVGDAGLAVGMFLMFSTFGTLSYAGVFAGAPAAGRGPLTAMGLLLLLGACAKSAQVPLQAWLGDAMEGPTPVSALIHAATMVTAGVYLIVRSGPLYNLAPDAQLAVVIVGAVTLLFGAFIGCAKDDIKRALAASTMSQIGYMVLAAGLGPAGYAFAIMHLLTHGFFKAGLFLGSGAVIHAMHEEQDMRRYGGLRAALPVTFATFGLAYLAIIGVPPFAGFFSKDAIIEAALGVGGTHGMVLGGAALLGAGVTAFYMTRVMLMTFFGQSRWAPGTHPHEAPKVMAWPMILLAIGSVFSGGLLAYGGTLQHWLEPVVGVHEEAAHALPSWVSTTVALAVVAVGVAVAMRMYGGKAVIPRVSPVQVSVLTTAARADLYGDAFNEEVFMRPGAQLTDALVTVDNAGVDGSVNALGTLVGRTSDRLRGLQTGFARNYALSMLAGAVLVAALILAVRLW
>NZ_CP011883.2|WP_054880442.1|1239354_1239654_-|NADH-quinone-oxidoreductase-subunit-NuoK
MNPANYLYLSALLFTIGAAGVLLRRNAIVMFMCVELMLNAVNLAFVTFARMHGHLDGQMIAFFTMVVAACEVVVGLAIIMTIFRSRKSASVDDANLLKG
>NZ_CP011883.2|WP_054880441.1|1239650_1240445_-|NADH-quinone-oxidoreductase-subunit-J
MTVIDLAANLAAATIVRTSTGEAVTFWALGALALIGAIGVVLSVNAVYSAMFLAMTMIILAVFYMVQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVVTGVGFGVLLVGAIGNVAAGAGFSGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRERFERRKTQRELSQERFLPGGHPTPLPNPGVYARQNAVDVAALLPDGSYSDLSVSRILRARGADGLETPSAEAIKGGAS
>NZ_CP011883.2|WP_082607535.1|1240441_1241020_-|NADH-quinone-oxidoreductase-subunit-NuoI
MRARRTHVAKLLDAVAGFGVTLGSMFKKTVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWACPADAIYVEGADNTDEQRFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNEYEMADDNRADLIYEKNQLLAPLLPEMTAPPHPRAPGATDKDYYQGNVTSNGLREKQNAGPKAGDPQ
>NZ_CP011883.2|WP_047313171.1|1240991_1242212_-|NADH-quinone-oxidoreductase-subunit-NuoH
MTAFGHDPWWLVLGKSLAIFVFLMLTVLVAILAERKLLGRMQLRPGPNRVGPKGALQSLADGIKLALKESITPGGIDRFVYFVAPVISVIPAFTAFAFIPFGPEVSVFGHRTPLQLTDLPAAVLFILGLSAIGVYGIVLGGWASGSTYPLLGGVRSTAQVISYEVAMGLSFAAVFLYAGTMSTSGIVKAQEDVWYVFLLLPSFVIYLISMVGETNRAPFDLPEAEGELVAGFHTEYSSLKFAMFMLAEYVNMTTVSALAATMFLGGWHAPWPLNIWAGANTGWWPLIWFTAKVWGFLFVYFWLRASLPRLRYDQFMALGWKLLIPVSLVWVMIAAVIRTLRNQGFQYWTPVLVISSIVVAATLLLSLRKPFSVPRAQAPQRHPVAAEPAFPTPPLPVGASKEDARG
>NZ_CP011883.2|WP_054880440.1|1242294_1244712_-|NADH-quinone-oxidoreductase-subunit-G
MTQTVDTEKKVTQPEMVTLTIDGAEISVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPMASCTTVVTDDMVVRTQLTSAVADKAQHGVMELLLINHPLDCPMCDKGGECPLQNQAMSNGRADSRYTDVKRTFAKPINISTQVLLDRERCILCARCTRFSEQIAGDPFIDMQERGALQQVGIYTGEPFDSYFSGNTVQICPVGALTGSAYRFRARPFDLVSSASVCEHCASGCAQRTDHRRGKVLRRLAGDDPEVNEEWNCDKGRWAFNYATQPDVITTPLIRDTDGTLQPASWSHAMAAAAQGLEAARGRTGVLVGGRATWEDAYAYAKFARIALDTNDIDFRARPHSHEEANFLAARIAGRPVTVSYSDLESAPVVLLVGFEPEDESPIVFLRLRKAARKHGVPVYAIAPFATRACEKMSGRLIKTIPGVEPSTLDGLTTGELGDLLATPGAVIMVGERLATVPGGLSAAARLADATGARLAWVPRRAGERGALEAGALPALLPGGRPLADAVARAQVCAAWHVDELPTASGRDADGMLAAATDGTLGALLVGGVEPADFADPDAVLAALDAVGFVVSVELRHSAVTERANVVFPVAPTTQKSGAFVNWEGRYRGFAPALHGTTQRAGQSDHRVLDTLADEMGVYLGLSTVEAVRAELSGLGSWDGKHAPLDVGAPHAAAAAQPGRGEAVLTGWRMLLDGGRLQDGEPYLAGTARTPVLRLSADSAAEIGAADGDAVTVTTSRGSITLPLTITDMPDRVVWLPLNSPGSAVHRQLGVTIGATVKIGVSA
>NZ_CP011883.2|WP_054880439.1|1244708_1246043_-|NADH-quinone-oxidoreductase-subunit-NuoF
MAAPTAPEATPLTPVISRYWDDPESWTLETYQRHDGYQAMKKALAMEPDTVINTVKDSGLRGRGGAGFSTGTKWSFIPQGDTGPAAKPHYLVVNADESEPGTCKDIPLMLATPHLLIEGVIIAAYAIRANHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLGRDIAGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSILLGGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLNYAGGVRAGHRLKFWTPGGSSTPLLTVDHLDVPLDYEGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDQIYARLETGGGTHDDLDKLTDIADAILGKSFCALGDGAASPVTSSITHFRDEYVAHVEGGGCPFDPRDSMLNGGNA
>NZ_CP011883.2|WP_054880438.1|1246042_1246822_-|NADH-quinone-oxidoreductase-subunit-NuoE
MTEPQAATDGERVFLRLGPPPEEPNQFVVDGAPQSYSPEVRARLEVDAKEIIGRYPNNRSALLPLLHLVQAEDSYLTPAGLKFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNALCAIMGGDAIFETLVNHLGVRNDQTTPDGKITLQHIECNAACDYAPVVMVNWEFFDNQTPESARELVDSLQSGKPISPTRGAPLCAFRLTSRILAGLPDQRPDDGQGGAGAATLAGLKVAREHGMQAPPMPDVSGEGQ
>NZ_CP011883.2|WP_054880437.1|1246818_1248141_-|NADH-quinone-oxidoreductase-subunit-D
MSAITESADGAGETVLVAGGQDWEQIVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETIIEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPFFNETAYCLGVEKLLGITDQIPERVNVIRVMMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIILNVFESITGLRMNSAYIRPGGVAQDLPAGAASEIAEALKQLRQPLHEMGELLNENAIWKARTQDVGYLDLAGCMALGITGPILRSTGLPHDLRKSEPYCGYQNYEFDVITADTCDAYGRYMIRVQEMWESMKIVEQCLDKLRPGPTMVADRKIAWPADLKVGPDGMGNSEEHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHYRDPSFTNLQSVAAMSEGGMVADLITAVASIDPVMGGVDR
>NZ_CP011883.2|WP_054880436.1|1248140_1248827_-|NADH-quinone-oxidoreductase-subunit-C
MSSADQESTAEVVDVRRGMFGVAGTGDTSGYGRLVRQVTLPGSSPRPYGSYFDDVVDGLAEALHRSDIELDDAIEKIVVDRDELTLHVRRDLLVQVAQRLRDEPELRFELCLGVNGVHYPHETGRELHAVYPLQSITHNRRLRLEVSAPDSDPHIPSLYEVYPTNDWHERETYDFFGIIFDGHPSLTRIEMPDDWQGHPQRKDYPLGGIPVEYKGAQIPPPDERRGYN

Crispr_ID: NZ_CP011883_5

• CRISPR_ID: NZ_CP011883_5
• CRISPR_location: 1272883-1272982
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: csa3

Consensus repeat of NZ_CP011883_5

Consensus_repeat	Method
GCCGTGCTTGCGATCGCCACTAGC	CRISPRCasFinder

spacers of NZ_CP011883_5

>5.1|1272907|52|NZ_CP011883|CRISPRCasFinder
GTGCTTGCGATCGCCACTAGCTCGATGGTGGCGACCCGCTGCGCCCGGCTTC

CRISPR arrays and Neighbor proteins around NZ_CP011883_5

CRISPR arrays

The CRISPR arrays of NZ_CP011883_5

>merge|NZ_CP011883|5|1272883-1272982|CRISPRCasFinder
GCCGCGCTTGCGATCACCGCGGCCGTGCTTGCGATCGCCACTAGCTCGATGGTGGCGACCCGCTGCGCCCGGCTTCGCCGCGCTTGCGATCGCCACTAGC

>NZ_CP011883|5|5|1272883-1272982|CRISPRCasFinder
GCCGCGCTTGCGATCACCGCGGCC	GTGCTTGCGATCGCCACTAGCTCGATGGTGGCGACCCGCTGCGCCCGGCTTC
GCCGCGCTTGCGATCGCCACTAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_047313132.1|1279037_1279421_+|DUF2750-domain-containing-protein	unknown	unknown	gnl|CDD|378546
NZ_CP011883.2|WP_054880424.1|1266607_1267453_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl|CDD|274422
NZ_CP011883.2|WP_156406722.1|1268937_1269075_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054881039.1|1264501_1265191_+|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl|CDD|225438
NZ_CP011883.2|WP_047313151.1|1263183_1264143_+|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl|CDD|366370
NZ_CP011883.2|WP_047313130.1|1280824_1281550_+|hypothetical-protein	unknown	unknown	gnl|CDD|239320
NZ_CP011883.2|WP_054880425.1|1266087_1266582_+|SsrA-binding-protein-SmpB	unknown	unknown	gnl|CDD|376590
NZ_CP011883.2|WP_054881037.1|1276347_1276875_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP011883.2|WP_054880421.1|1271465_1272827_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NZ_CP011883.2|WP_054880423.1|1269087_1270254_-|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223523
NZ_CP011883.2|WP_047313131.1|1280478_1280817_+|DoxX-family-protein	unknown	unknown	gnl|CDD|379266
NZ_CP011883.2|WP_054880417.1|1277029_1277917_+|oxidoreductase	unknown	unknown	gnl|CDD|235725
NZ_CP011883.2|WP_047313149.1|1265191_1266085_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|225088
NZ_CP011883.2|WP_054880422.1|1270414_1271023_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP011883.2|WP_082607729.1|1275544_1276195_-|DUF732-domain-containing-protein	unknown	unknown	gnl|CDD|368380
NZ_CP011883.2|WP_047313138.1|1271088_1271511_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047313133.1|1278186_1278996_+|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|181382
NZ_CP011883.2|WP_054881038.1|1273732_1274512_+|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl|CDD|224931
NZ_CP011883.2|WP_054880419.1|1274530_1275205_-|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|238089
NZ_CP011883.2|WP_054881036.1|1279523_1280459_+|CoA-ester-lyase	unknown	unknown	gnl|CDD|225184

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP011883.2|WP_054880419.1|1274530_1275205_-|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	4.4e-16	54.1	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_047313132.1|1279037_1279421_+|DUF2750-domain-containing-protein	gnl|CDD|378546	pfam11042, DUF2750, Protein of unknown function (DUF2750). This family is conserved in Proteobacteria. The function is not known.	1.87737e-22
NZ_CP011883.2|WP_054880424.1|1266607_1267453_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl|CDD|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	9.891e-28
NZ_CP011883.2|WP_054881039.1|1264501_1265191_+|cell-division-ATP-binding-protein-FtsE	gnl|CDD|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	4.99355e-134
NZ_CP011883.2|WP_047313151.1|1263183_1264143_+|mechanosensitive-ion-channel-family-protein	gnl|CDD|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	3.94807e-42
NZ_CP011883.2|WP_047313130.1|1280824_1281550_+|hypothetical-protein	gnl|CDD|239320	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).	2.47335e-11
NZ_CP011883.2|WP_054880425.1|1266087_1266582_+|SsrA-binding-protein-SmpB	gnl|CDD|376590	pfam01668, SmpB, SmpB protein.	2.6611e-88
NZ_CP011883.2|WP_054881037.1|1276347_1276875_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.49485e-09
NZ_CP011883.2|WP_054880421.1|1271465_1272827_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.74371e-97
NZ_CP011883.2|WP_054880423.1|1269087_1270254_-|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	6.22438e-35
NZ_CP011883.2|WP_047313131.1|1280478_1280817_+|DoxX-family-protein	gnl|CDD|379266	pfam13564, DoxX_2, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	0.00968519
NZ_CP011883.2|WP_054880417.1|1277029_1277917_+|oxidoreductase	gnl|CDD|235725	PRK06179, PRK06179, short chain dehydrogenase; Provisional.	1.71804e-158
NZ_CP011883.2|WP_047313149.1|1265191_1266085_+|ABC-transporter-permease	gnl|CDD|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	7.98627e-87
NZ_CP011883.2|WP_054881038.1|1273732_1274512_+|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl|CDD|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	4.82253e-11
NZ_CP011883.2|WP_082607729.1|1275544_1276195_-|DUF732-domain-containing-protein	gnl|CDD|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.31094e-11
NZ_CP011883.2|WP_047313133.1|1278186_1278996_+|methyltransferase-domain-containing-protein	gnl|CDD|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	5.57358e-81
NZ_CP011883.2|WP_054880422.1|1270414_1271023_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.40079e-19
NZ_CP011883.2|WP_054880419.1|1274530_1275205_-|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.6253e-23
NZ_CP011883.2|WP_054881036.1|1279523_1280459_+|CoA-ester-lyase	gnl|CDD|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	3.59983e-73

Protein sequences

>NZ_CP011883.2|WP_054880421.1|1271465_1272827_+|cytochrome-P450
MAGGRTPGVRRGGTVTATLPPGPRLPRYVQSVLYLKFREWFLPAMHRRYGDVFSLRVPPYADNLVVYTRPEHIKEIFAADPKLLHGGEGNQILGLVMGEHSVLTTDEAEHARMRSLLTPAFTRAALQGYRDMIASVTREHIARWPVGAGINSLDCMNALTLDVILRVVFGVTDPNVKEELTNRLQGIINIQPAIFAGLRYPWLKRVNPWKRFFDGQRKIDAIIYREIASRRAVSDLDLRTDVLSRLLQTKDPSTAPLTDIELRDQLITLLLAGHETTAAALSWTLWELAHAPDIQDQVVSAALADDDGFLEAVLKEGMRCHTVIASTARKVTAPTEIGGWRLPAGTVVNTSILLAHANAASHPDPTKFHPGRFLDGSVAPNTWLPFGGGVRRCLGFGFALTEGVVILREVFRQFTITAAGPPKGETPMVRNITTVPKHGAHLRLTPQRRLVRW
>NZ_CP011883.2|WP_047313138.1|1271088_1271511_+|hypothetical-protein
MASEVVRFIGVFNADGGVRGGLAYVLGKLRGTTSCALCDVTHRGVWTNPEWKDVTCALGAPFDLVCRNERSAEVERLTGDLTPAVVAQTSNGYQIVMGPNDFAGVSGDAHEFIRALRRACIDHDLAWPGVEPPEFDEAAR
>NZ_CP011883.2|WP_054880422.1|1270414_1271023_-|TetR/AcrR-family-transcriptional-regulator
MQQPRTNRDKLLDGALACLRERGYGNTSSRDIARAAGVNVASINYHFGSKDALLDDALGRCFATWNERVQQAFDQSAATNPYGQIRAVLEATVDSFEEIRPAIYACIESHAPALRSPTLRQRLAAGYADVRQRTVDLARAALGEDVELPDTLPTVVSVLMAIIDGLMIQWIADPSAIPRSSEVLQALADIGEIVTGVSSQSP
>NZ_CP011883.2|WP_054880423.1|1269087_1270254_-|NAD(P)/FAD-dependent-oxidoreductase
MSKTVLVLGAGVGGLTTADTLRQLLPPEDRIILVDKGFDGTLGLSLLWVLRGWRRPDEVRVRATSASLPGVELITATVDRIDISGQAVHTDHGVIGYDALVIALGASLNAAAVPGLTDALDAGVAGQFYTLDGAAQLHAKVEALQRGRIAVLITGAPFKCPAAPFEAAFVMAAQLGDRFADGTVRIDTFTPDPLPMPVAGPEVGEALVAMLKDRGIGFHPRKTISRVDSAETTLRFDDGTSEPFDLLAVVPPHVPSAAARSTGLGGVGWIPVDPHTLSTTVDNVWAIGDAAVLPLANGKPLPKAAVFAEAQARVVAHGVARHLGYDAPERLFTGEGACYVETGDGQAAKGAGNFLSSPAPSVTLYPPSREFHEEKVAQERAWLDRWNT
>NZ_CP011883.2|WP_156406722.1|1268937_1269075_-|hypothetical-protein
MIDDQGSYPLIAPKDFDASYAMLVVSITPARRISGGETPPYFVLI
>NZ_CP011883.2|WP_054880424.1|1266607_1267453_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MVARSLTQLDKPDVLAGLFAVWDCLDALLAGLPQDGWHAPTPLPGWNVQAVVAHIIGTESFLQGIAPPQPDIDVTSLQHVRNDIGAMNECWVRQLSGESGTSVLARYRAVTQARRTALSGMSDDEWNAPTPTPAGTDSYGRFMRIRIFDCWMHEQDIREALARPSSDGELAGPASQLSLDEIAATMGFVVGKLAQAPDGARVEFDLTGPLARRIRVSVDGRAQLVDDFGGLQPTATIRLDGLQFTRLAGGRPMCPARPQDVELSGDKDVATRIVERLNFVI
>NZ_CP011883.2|WP_054880425.1|1266087_1266582_+|SsrA-binding-protein-SmpB
MAGNPHGGKRASKQIVATNRKARHDYAIVELFEAGVALLGTEVKSLREGHASLVDAFATVDDGEVWLRNMHIPEYQHGSWTNHDPRRNRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFSDGKVKVELALARGKKLHDKRQDMARRDAQREVVRELGRRAKGMT
>NZ_CP011883.2|WP_047313149.1|1265191_1266085_+|ABC-transporter-permease
MRFGFLLNEVVTGLRRNVTMTIAMILTTAISIGLFGGGLLVVRLADNSRSIYLDRVETQVFLTDDVSANDPTCSTNPCKALRGKIEARDDVKSVRFLNRQDAYDDAIRKFPQYKDVAGKDSFPASFIVKLANPEQHKEFDSAMQGQPGVLSVLNQKELIDRLFAVLDGLSDVAFAIALVQAIGAVLLIANMVQVAAYTRRTEIGIMRLVGASRWYTQLPFLLEAMAAATVGAVIAIVGLLVVRAMFLNNALNQFYQANLIARVDYADVLYISPWLLLLGVALAASTGYATLRVYVRR
>NZ_CP011883.2|WP_054881039.1|1264501_1265191_+|cell-division-ATP-binding-protein-FtsE
MITLDHVSKQYKSSARPALDNVNVKIDKGEFVFLIGPSGSGKSTFMRLLLGAEMPTTGDVRVSKFHVNKLPGRHIPRLRQVIGCVFQDFRLLQQKTVYENVAFALEVIGRRSDAINRVVPDVLETVGLSGKANRLPDELSGGEQQRVAIARAFVNRPLVLLADEPTGNLDPDTSKDIMDLLERINRTGTTVLMATHDHHIVDSMRQRVVELSLGRLVRDEQRGIYGMDR
>NZ_CP011883.2|WP_047313151.1|1263183_1264143_+|mechanosensitive-ion-channel-family-protein
MTANTTVLAVSLTQRWHDFWRGEIGAWIIDKGLRIVMLLIAAVLAVRFVTWVAQQVTRQLDVDFVESDALVRSEATKHRQAVASVIQWVSIVIIAIWVILQISDVLRFSMGGLVAPAAVLGAALGFGAQQLVKDLLAGFFIIVEKQYGFGDLVALTVSGAADEARGTVENVTLRVTRLRSSDGEVFTVPNGQIVKSVNLSKDWARAVVDIPVATSADLNRVNVVLHQECEHARDDPMLAELLLDAPTMMGVENIAVDTVTLRVVARTLPGKQFEAGRQLRVVVIRALARAGIVTAADTTVGLVDGPAVPAANAAEDQTR
>NZ_CP011883.2|WP_054881038.1|1273732_1274512_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MKRSLIVGYGAICYVVFLAAFLYAIGFVGNLVVPRTVDNGIAASMAEAVAVNVVLLAAFALQHSVMARPGFKRRWTRLIPPAIERSTYVLLSSLLLFLLFWQWRTLPAIVWNVSWPPGKVALQALFWLGWVIVLASTFMINHFDLFGLRQVFLAWREKSYSELEFRATMLYRLVRHPLMLGFIVAFWAAPTMSAGHLLFAVMTTTYILVVLPIEEHDLSRALGEEYQQYRTRVPMLIPGVRLRKLRKQRSRLDAGARPT
>NZ_CP011883.2|WP_054880419.1|1274530_1275205_-|metalloregulator-ArsR/SmtB-family-transcription-factor
MSGQPDRKAALLEQIARVGKALGNGRRLQILDLLAQGERTVEAIATATGMNVTTASANLQALKNGGLVRARRDGTRQHYRLAGDDVAKLFALVQAVADEHLADVALAAAAVLGSPEDAITRAELLRRRDAGDVTLVDVRPHDEYVAGHIPGAINIPLAELADRLAELPANRDIVAYCRGAYCVMAPDAVRIARKAGRGVKRLDDGMLEWRLAGLPVDEGAAVAS
>NZ_CP011883.2|WP_082607729.1|1275544_1276195_-|DUF732-domain-containing-protein
MALMAEPGPAADDTAVVDGSETVVVPSSAATEAVDLAWSRDDDRDVQVGIPADIQTELTAVHQSWRATWGKAAALLMAGLVIAAAIVVGHWGFSTLASPHQAAGRAPGASSTPKLSATPGPAVPATASPPVIESTPDQDSRYVQALNDRGISFANPEGAIYNGKMVCGDIQRGVSVQQIADAFRASNPALTDSANAYVAISVHAYCPQNDKLVAGF
>NZ_CP011883.2|WP_054881037.1|1276347_1276875_-|helix-turn-helix-transcriptional-regulator
MDTAAELFYRDGINATGVDRLATESSVSKRTLYQHFPSKSAVIEEYLHNLERRVANPSAADTDDRTPRERLLALFDTPDPAATPIRGCPFHNAAVEAAGAMPGVQAIVRANKRSFISGTIELAKQSGAADPHLLGNQLAVLYEGAAALATSLNDASPWILARTAAATLIDQAVAR
>NZ_CP011883.2|WP_054880417.1|1277029_1277917_+|oxidoreductase
MKPQSSVALVTGVSSGIGRAVATALAAKGFEVFGTSRRPQTTAPIAGVQLVQLDVTDDASITRAVSTVIDRAGRIDVLVNNAGMGVIGAAEESSMIQARQLFDTNFFGLVRLTQEVLPHMRAQRSGRIINIGSVLGLLPAPYAALYAASKHAVEGYSESLDHETREFGVRVLVVEPAYTNTSFETHAADVDSPIDSYAIIREHVRQVLTEEVRAGDDPAVVARVVLDAVTSRKPKLRYPAGPLARRLSRLRRFAPASLVDKGIRKASKLTTTPKPNDHQAPIERPVAIFPRAAGD
>NZ_CP011883.2|WP_047313133.1|1278186_1278996_+|methyltransferase-domain-containing-protein
MADDLASGFRSVDSASDFSVFSDCLTLIDSLPFFAECKRTSYQLLGATPGRRILEVGCGLGDDAASLAKLVAPGGSVVAIDASRTMIEAARRRHHDVTGLSFDVADAAHLPFDDESFDACRIDRVLQHIGDPAPPIMQMVRVLRPGGVLVAFDNDWETLTVDCADRLITRAILNAWCDRFPSGWIGRRLVPLFLQAGLGEVIAYPKTLVLRELAVADRLYSFLASAKRLAETGVISGSDAELWSRSLRTADAEGRFFTSYTGFLVSGSR
>NZ_CP011883.2|WP_047313132.1|1279037_1279421_+|DUF2750-domain-containing-protein
MALHLNADLEARYQRFVNRVRANGEVWVLLSPDMRGPWVESNHYSQEDGEPVPVHLVYSAAGYARQHATGPWEGWEPAAMDVEEFVGGPLKGMHECGDLVGPDYNSDLAGVEVDPMDLALALLGESD
>NZ_CP011883.2|WP_054881036.1|1279523_1280459_+|CoA-ester-lyase
MTTDQSTYEQLDSHSVDPTDVGSRIDPVLARSWLLVNGAHADRFQSAARSRADIVVFDIEDAVAPKDKPAARDHVVRWLRTENSDWVRINGFGTPWWADDIAALAASPVGGVMLAMVESVDHVTETAKRLPNVPIVALVETARGLERITEIAAAKGTFRLAFGIGDFRRDTGFGEDPTTLAYARSRFTIAAKAANLPSAIDGPTIGSNALKLIEATAVSAEFGMTGKICLTPDQCSVVNEGLSPSQDEIAWAKEFFAEFERDGGEIRNGSDLPRIARATKILELARAYGIEVSDFDDEPVHSPAPSDTYHY
>NZ_CP011883.2|WP_047313131.1|1280478_1280817_+|DoxX-family-protein
MASARTYDVLATYLAASAVGDAIPLPFVTRVLDAIDFPPRYRWIFAPIKAAAAIGLFSARWSPALTRLTTAMLTIYFVLAVGFHVKARDLSVAAVGAAANAAIFAVLTAKRN
>NZ_CP011883.2|WP_047313130.1|1280824_1281550_+|hypothetical-protein
MGTAVDFHFDPMCPFAYQTSLWIRDVREQVGITVNWRFFSLEEINREAGKKHPWQRQWSYGWSLMRIGAMLRRTDMSLLDRWYAAIGHELHAAGGKPHDPAVARRLLSDIGVDPTILDGALADPSTHDDIRAEHQRVVDAGGFGVPTLFVSGVAGEDQCLFGPVLVDPPTGAAALKLWNVVTGMAELPHVYELQRPKTQADAELIGRQLRPYLDGRDWVSINRGDVIDVEELTGGRQSRRR

Crispr_ID: NZ_CP011883_6

• CRISPR_ID: NZ_CP011883_6
• CRISPR_location: 1393925-1394025
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_6

Consensus_repeat	Method
CGAAGCGATGAGGAGGAGCGGCGC	CRISPRCasFinder

spacers of NZ_CP011883_6

>6.1|1393949|53|NZ_CP011883|CRISPRCasFinder
AGATGACCCGCGCCGGCGACGATGCAGTGGGGGTACCACCCGCTTGCGGGGGA

CRISPR arrays and Neighbor proteins around NZ_CP011883_6

CRISPR arrays

The CRISPR arrays of NZ_CP011883_6

>merge|NZ_CP011883|6|1393925-1394025|CRISPRCasFinder
CGAAGCGATGAGGAGGAGCGGCGCAGATGACCCGCGCCGGCGACGATGCAGTGGGGGTACCACCCGCTTGCGGGGGACGAAGCGATGAGGAGGAGCGGCGC

>NZ_CP011883|6|6|1393925-1394025|CRISPRCasFinder
CGAAGCGATGAGGAGGAGCGGCGC	AGATGACCCGCGCCGGCGACGATGCAGTGGGGGTACCACCCGCTTGCGGGGGA
CGAAGCGATGAGGAGGAGCGGCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_047313052.1|1402166_1402763_+|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl|CDD|179314
NZ_CP011883.2|WP_047313060.1|1392314_1393901_+|phosphoglycerate-dehydrogenase	unknown	unknown	gnl|CDD|237436
NZ_CP011883.2|WP_047313063.1|1389544_1390546_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NZ_CP011883.2|WP_047313058.1|1394997_1396341_-|MFS-transporter	unknown	unknown	gnl|CDD|341028
NZ_CP011883.2|WP_054880370.1|1390845_1392285_-|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224154
NZ_CP011883.2|WP_054880368.1|1396494_1397313_+|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl|CDD|223257
NZ_CP011883.2|WP_054880369.1|1394027_1395038_+|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl|CDD|179579
NZ_CP011883.2|WP_047313053.1|1400680_1402144_+|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl|CDD|235490
NZ_CP011883.2|WP_047313422.1|1384142_1385264_-|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|225044
NZ_CP011883.2|WP_047313421.1|1386360_1386717_-|PH-domain-containing-protein	unknown	unknown	gnl|CDD|371225
NZ_CP011883.2|WP_054880364.1|1403687_1404623_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239645
NZ_CP011883.2|WP_054880365.1|1402977_1403619_+|HU-family-DNA-binding-protein	unknown	unknown	gnl|CDD|223847
NZ_CP011883.2|WP_082607548.1|1397309_1398809_+|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953
NZ_CP011883.2|WP_047313066.1|1385511_1386354_+|DoxX-family-protein	unknown	unknown	gnl|CDD|225168
NZ_CP011883.2|WP_054880366.1|1399893_1400595_-|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP011883.2|WP_047313055.1|1399263_1399770_-|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl|CDD|274679
NZ_CP011883.2|WP_054880372.1|1383111_1384029_+|PDZ-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NZ_CP011883.2|WP_047313064.1|1388990_1389503_+|acetolactate-synthase-small-subunit	unknown	unknown	gnl|CDD|183365
NZ_CP011883.2|WP_054880371.1|1387063_1388941_+|acetolactate-synthase-large-subunit	unknown	unknown	gnl|CDD|236098
NZ_CP011883.2|WP_054880373.1|1381547_1383053_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl|CDD|235489

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_047313052.1|1402166_1402763_+|3-isopropylmalate-dehydratase-small-subunit	gnl|CDD|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	7.83859e-116
NZ_CP011883.2|WP_047313060.1|1392314_1393901_+|phosphoglycerate-dehydrogenase	gnl|CDD|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NZ_CP011883.2|WP_047313063.1|1389544_1390546_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP011883.2|WP_047313058.1|1394997_1396341_-|MFS-transporter	gnl|CDD|341028	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily. This family includes the Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.14199e-92
NZ_CP011883.2|WP_054880370.1|1390845_1392285_-|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	6.28093e-82
NZ_CP011883.2|WP_054880368.1|1396494_1397313_+|fumarylacetoacetate-hydrolase-family-protein	gnl|CDD|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.09228e-109
NZ_CP011883.2|WP_054880369.1|1394027_1395038_+|3-isopropylmalate-dehydrogenase	gnl|CDD|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP011883.2|WP_047313053.1|1400680_1402144_+|3-isopropylmalate-dehydratase-large-subunit	gnl|CDD|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP011883.2|WP_047313422.1|1384142_1385264_-|sorbosone-dehydrogenase-family-protein	gnl|CDD|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	7.89316e-94
NZ_CP011883.2|WP_047313421.1|1386360_1386717_-|PH-domain-containing-protein	gnl|CDD|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	6.24951e-15
NZ_CP011883.2|WP_054880364.1|1403687_1404623_-|NUDIX-hydrolase	gnl|CDD|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	7.58372e-49
NZ_CP011883.2|WP_054880365.1|1402977_1403619_+|HU-family-DNA-binding-protein	gnl|CDD|223847	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].	3.64284e-24
NZ_CP011883.2|WP_082607548.1|1397309_1398809_+|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP011883.2|WP_047313066.1|1385511_1386354_+|DoxX-family-protein	gnl|CDD|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.18196e-25
NZ_CP011883.2|WP_054880366.1|1399893_1400595_-|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.27562e-56
NZ_CP011883.2|WP_047313055.1|1399263_1399770_-|PPOX-class-F420-dependent-oxidoreductase	gnl|CDD|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	4.83626e-34
NZ_CP011883.2|WP_054880372.1|1383111_1384029_+|PDZ-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.38321e-71
NZ_CP011883.2|WP_047313064.1|1388990_1389503_+|acetolactate-synthase-small-subunit	gnl|CDD|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	2.26263e-88
NZ_CP011883.2|WP_054880371.1|1387063_1388941_+|acetolactate-synthase-large-subunit	gnl|CDD|236098	PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit; Validated.	0
NZ_CP011883.2|WP_054880373.1|1381547_1383053_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl|CDD|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0

Protein sequences

>NZ_CP011883.2|WP_047313060.1|1392314_1393901_+|phosphoglycerate-dehydrogenase
MNLPVVLIADKLAQSTVAALGDQVEVRWVDGPDRAKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRARTWKRSSFNGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAVRSGHVRAAGLDVFATEPCTDSPLFELPQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAPWLDLVRKLGVLAAALSDELPASLSVQVRGELASEDVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVSAELTTASESPNHRSVVDVRAVASDGSVVNIAGTLSGPQLVQKIVGINGRNFDLRAQGTNLVINYVDAPGALGKIGTLLGAAGVNIQAAQLSEDAEGPGATILLRLDQDVPGDVRSAIGAAVGANKLEVVDLS
>NZ_CP011883.2|WP_054880370.1|1390845_1392285_-|NAD(P)/FAD-dependent-oxidoreductase
MDVTVVGSGPNGLSAAVICARAGLKVQVIEAQPTFGGGARTAADPEFPGVQHDICSAVHPLALASPFFAEFDLRARGVALAAPEISYANPLPGRPAAIAYRDLERTCAELVDGASWRRLLGPLAADSDAVIGLLLGDKRSVPSSILPALRLGLRILAQGTPAWRSLGGEDARALFTGVAAHAVSRMPSPASAGAGLMLATLAHTVGWPIAVGGTQTITDALIADLRTHGGELTAGLEITEITRPPSGVVVFDTAPTALLQVYGDTLSPRRTKALRRYRFGPGVAKVDFVLSDDIPWSDPRLRHAPTLHLGGTREQMARAEADVAAGRHARWPMLLAASPHIADPGRIDTAGRRPFWTYAHVPSNSTVDATEAVTGVVERFAPGFRDIVVAARAVPAARMTDHNANYVGGDIAMGGNSLWRAIAGPTPRLNPWRTPIPKVYLCSAATPPGSGVHGMAGYYAARTLLRREFGITNMPKLTP
>NZ_CP011883.2|WP_047313063.1|1389544_1390546_+|ketol-acid-reductoisomerase
MFYDDDADLSIIQRRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKEGSKSRPKVSEQGLDVDTPAEVAKWADVIMLLAPDTAQADIFKNDIEPNLKAGDALFFGHGLNIHFDLIKPPGDVTVAMVAPKGPGHLVRRQFVDGKGVPCLIAVDQDPTGTGEALALSYAKAIGGTRAGVIKTTFKDETETDLFGEQAVLCGGTEELVKAGFDVMVEAGYPPEMAYFEVLHELKLIVDLMYEGGIARMNYSVSDTAEFGGYLSGPRVIDADTKERMRGILRDIQDGSFVKKLVANVEGGNKQLEALRRENAEHPIEVTGKKLRDLMSWVDRPITETA
>NZ_CP011883.2|WP_047313064.1|1388990_1389503_+|acetolactate-synthase-small-subunit
MSGSPTTHTLSVLVEDTPGVLARVAALFSRRGFNIESLAVGATESKNMSRMTIVVSAEETPLEQVTKQLHKLINVIKVVEQDADNSLSRELALIKVRAEAGTRSQVIEAVNLFRARVIDVSPESLTVEATGDRGKIEALLRVLEPFGVREIVQSGVVSLSRGPRGIGTVK
>NZ_CP011883.2|WP_054880371.1|1387063_1388941_+|acetolactate-synthase-large-subunit
MSAPTKPPAQPQGSGNGVLNTVKPVTKSPSKPAAMKPKHVAPEQLTGAQSVIRSLEELDVEVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHATGKVGVCMATSGPGATNLVTPLADAQMDSVPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRAGDDIPRVLAEAFHIASSGRPGAVLVDIPKDVLQGQCTFSWPPKMDLPGYKPNTKPHNRQIREAAKLIATARKPVLYVGGGVIRGEATEQLADLAELTGIPVVTTLMARGAFPDSHHQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDPAEIGKNRYADVPIVGDVKAVITELIAMLRHYQTPGNVDMTDWWAYLEDVRARYPLSYGPQSDGSLSPEYVIEKLGEIAGPDAVYVAGVGQHQMWAAQFISYEKPRTWLNSGGLGTMGFAIPAAMGAKIARPEAEVWAIDGDGCFQMTNQELATCAIEGAPIKVALINNGNLGMVRQWQTLFYQERYSQTDLATHSHRIPDFVKLAEALGCVGLRCERQEDVADVISQARAINDRPVVIDFIVGADAQVWPMVAAGTSNDEIQAARGIRPLFDDESEGHA
>NZ_CP011883.2|WP_047313421.1|1386360_1386717_-|PH-domain-containing-protein
MIKVSPVAHLAVGFLTLGLLVPVLAWPPTVPLLVIPVVLSALIVRLRTVADDRGVTVRTLLGSQAVCWEDIDGLRFNRGSWARARLKNGAELRLPAVTFATLPLLTEASSGRVPNPYR
>NZ_CP011883.2|WP_047313066.1|1385511_1386354_+|DoxX-family-protein
MTGQSHDEHWRRPGECPEPIPGRPASASLVDPEDDLTPVGYPGDFGTTTVIPYSDPGHLAGAGGAGYNLLDQQESLPYVHPQPLARHAVAEPAEIDSDQDNEWLHTVGRRGTQHLGLLVLRVGLGVVLAAHGLQKLFGWWSGQGLTGFKNSLTEVGYQHADILAYVSAGGEVVAGVLLVLGLFAPVAAAGALAFLINGLLAAIAKHSHPFSFFLPDGNEYQITLIVMAVTVILCGPGRYGLDAGRRWAYRPFIGSFIALLAGIAAGVAVWVLLNGVNPLG
>NZ_CP011883.2|WP_047313422.1|1384142_1385264_-|sorbosone-dehydrogenase-family-protein
MRIRRSVRSGLAALCAAVLVSSGCARFNDAQSQPFTTNPELQPPPSSTPPPPPPLPPTPFPKQCPAPGVMQGCLESTSGLIMGIDSKTALVAERTTGAVKEISVSAEPKVKTVIPVDSSGDGGLMDIVLSPTYTQDRLMYAYISTPTDNRVIRVADGDIPKDILTGIPKGAVGNTGALIFTSPTTLVVLTGDAGNPALAADPKSLAGKLLRIEQPTTIGQAPPTTALSGIGSGGGLCTDPVDGSLYVTDRTPTADRLQRITKSSEVSTVWTWPDKPGVAGCAAMDGTVLVNLINPKLTVAVRLAPSTGAVTGEPDVVRKDTHAHAWALRMSPDGNVWGATVNKTAGDAEKLDDVVFPLFPQGGGFPRNNDDKT
>NZ_CP011883.2|WP_054880372.1|1383111_1384029_+|PDZ-domain-containing-protein
MPEEALDAYSRVVTAVAETVLPSVASLAVRGRRGNGGGSASVITADGYLLTSAHVVAGARSAEATFTDGTAVDADVAGRDELSDLAVLKARGSVPAPVRMGRAEDLRVGQLVVAVGNPLGLAGSVTAGIVSGLGRSLPTRSGRVVDEVIQTDAALNPGNSGGVLADGQGRMVGVSTAVAGVGLGLAVPINSSTHKIIAALMRVGRVRRAWLGIAGSHVPVPPAVANKLGTAHGLQVASVVPGSPAAAAGLRRGDIVVSVDGQHVVTATAIQRLMVEDAIARRIEMTVWRNGALIDVFVVPRELAD
>NZ_CP011883.2|WP_054880373.1|1381547_1383053_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MTSVADLLDYDDVVARFDPVLGLEVHVELSTVTKMFCGCATTFGAEPNTQVCPVCLGLPGSLPVLNRAAVQSAIRIGLALNCEIVPWCRFARKNYFYPDMPKNYQISQYDEPIAINGYLEAPLEDGTTWRVEIERAHMEEDTGKLTHLGSETGRIHGATTSLIDYNRAGVPLIEIVTKPIEGAGTRAPQIARAYVTALRDLLRALDVSDVRMDQGSMRCDANVSLKPAGTAEFGTRTETKNVNSLKSVEVAVRYEMQRQGAILVSGGRITQETRHFHEAGYTSPGRAKETAQDYRYFPEPDLEPVAPSRELVEQLRQTIPELPWLSRKRIQQEWGISDEVMRDLVNAGAVELVAATVKHGVSSEQARAWWGNFLVQKANEANITLDELAITPAQVAAVVALVDEGKLSTKLARQVVEGVLAGEGEPEQVMTARGLALVRDDSVTQAAVDEALAANPDVAEKIRGGKVAAAGAIVGAVMKATRGQADAARVRELVLAACGQA
>NZ_CP011883.2|WP_054880369.1|1394027_1395038_+|3-isopropylmalate-dehydrogenase
MKLAVIPGDGIGPEVVAEAVKILDAVLPGVQKTSYDLGARRYHTTGEILPESVLAELREQDAILLGAVGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVSSPLAGKPEIDFVVVREGTEGPYTGTGGAIRVGTPNEVATEVSVNTAFGVRRVVQDAFERARQRRKQLTLVHKNNVLTYAGALWWRTVQEVGEKYPDVEVAYQHVDAATIHMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLAHLGEDKSAARVDQAVASYLATRGNERFSTGEVGERIAAAL
>NZ_CP011883.2|WP_047313058.1|1394997_1396341_-|MFS-transporter
MCKHDPVPEDPIPLDQLSLGARWSITLVSVGVTSSSFLFINGVAFMIPALVAARGTPLAEAGLLASMPSWGMVVTLVFWGYLTDRLGERIVMTVGSALTAAATYAAASVHSLVAMGAFLFLGGMAAASSNTAGGGLVSGWFPPNKRGVAMGIRQTAQPLGIAIGALAIPELAEHNPNAGLMFPALMCTISAVASAIGVVDPPRKARTAASDKELANPYRASFTLWRIHAVSALLMMPQAVTVTFMLVWLVEHHGWSVAAAGGLVTVSQLLGALGRVLAGRWSDRVGSRMRPVRIIALAAASTLFLLALVDNQGSRYDVLLMIAISVIAVLDNGLEATAITEFAGPFWSGRALGIQNTSQRLMAAAAPPLFGALIAAAAYPPAWALCGLFPLAAAPLVPVRWVPPGWEPSGGRKRGGAGRWGHLPLAGDESSLIKPRVRRLSVRQLRR
>NZ_CP011883.2|WP_054880368.1|1396494_1397313_+|fumarylacetoacetate-hydrolase-family-protein
MRLGRIASPDGVAFVSIEGEPDDPGGMSAREIAEHPFGAPTFTGRLWPLADVRLLAPMLAGKVVCIGKNYADHIAEMGAEMGGQTGPAPADPVIFLKPNTAIIGPNVPIRLPANASPVHFEGELALVVGRPCKDVPAGQAADYILGYTIGNDVSARDQQRADGQWTRAKGHDTFCPVGPWIVTDLDPLDPADLELRTEVNGEVKQHSRTSLMIHNVGAILEWISAVMTLLPGDLILTGTPAGVGPIEDGDTVSITIEGIGTLTNPVVRKGKS
>NZ_CP011883.2|WP_082607548.1|1397309_1398809_+|glutamate--tRNA-ligase
MTAAASNATPQAAKVRVRFCPSPTGTPHVGMVRTALFNWAYARHTGGTFVFRIEDTDAERDSEESYLALLDALRWLGLNWDEGPEVGGPYGPYRQSQRTDIHREVVAKLLAAGEAYHAFSTPEEVEARHLAAGRNPKLGYDNFDRDLTDAQRAAYLAEGRQPVVRLRMPDQDISWDDLVRGTTTFAAGTVPDYALTRANGDPLYTLVNPCDDALMKITHVLRGEDILSSTPRQVALYQALIRIGVAERIPEFGHLPSVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWAIADDHDLFSLDEMVAAFDVVDVNSNPARFDQKKADAVNAEHIRMLDARDFASRLRDYFTAHGYRIALDPANYDASFAAAAQLVQTRIVVLGDAWDLLKFLNDDEYAIDPKAAAKELGADAGPVLDAAHAALDSLVDWTTASIEEALKAALIEGLGLKPRKAFGPIRVAATGASISPPLFESLELLGRARSLQRLGAARERV
>NZ_CP011883.2|WP_047313055.1|1399263_1399770_-|PPOX-class-F420-dependent-oxidoreductase
MGTNQRAHIVMSEAEITDFVVNSRTGTLATIGPNGQPHLTAMWYAVIDGEIWLETKAKSQKAVNLKRDPRVSFLIEDGQTYDTLRGVSFEGTAEIVDDPDSLFRVGVSIWERYTGPYTDDAKPMVDQMMNKRVGVRIVSRRTRSWDHRKLGLPHIPVGGSTAPAALAH
>NZ_CP011883.2|WP_054880366.1|1399893_1400595_-|IclR-family-transcriptional-regulator
MRQHSGIGVLDKAVALLHTIAESPRGLAELCDRTGLPRATTYRLAAALEVHRLVARDDEGRWRLGPAICELAIHVNDPLLAASAAVLPALRETTGESVQLYRREGTSRVCVAALEPPAGLRDTVPVGARLPMTAGSGAKVLLAHSDAATREAVLPTAKFTDRMLAEVRRRGWAQSVAEREPGVASVSVPVRDGRGVVIAAISVSGPIDRMGRRPGARWAADLLSAAEALTRRL
>NZ_CP011883.2|WP_047313053.1|1400680_1402144_+|3-isopropylmalate-dehydratase-large-subunit
MDGKKKQAGGAHKPRTLAEKVWDDHVVVAGQGAGQDRGPDLIYIDLHLVHEVTSPQAFDGLRLAGRAVRRPDLTVATEDHNVPTIDIDKPIADPVSRTQVETLRRNCAEFGVRLHPMGDIEQGIVHVVGPQLGLTQPGMTIVCGDSHTSTHGAFGAIAMGIGTSEVEHVLATQTLPLRPFKTMAVNVDGGVDGRLPAGVTAKDIILALIAKIGTGGGQGYVIEYRGSAIESLSMEGRMTICNMSIEAGARAGMVAPDETTYEFLRDRPHAPTGAQWDAAVAYWQQLRTDADAVFDTEVYLDATSLSPFVTWGTNPGQGVPLAAAVPDPELMTDDAARQAAEKALAYMDLRPGTLMRDIAVDAVFVGSCTNGRIEDLRMVADVLRGRKVAHGVRMLIVPGSMRVRAQAEAEGLGEIFITAGAQWRQAGCSMCLGMNPDQLAPGERCAATSNRNFEGRQGKGGRTHLVSPAVAAATAVRGTLSAPADLN
>NZ_CP011883.2|WP_047313052.1|1402166_1402763_+|3-isopropylmalate-dehydratase-small-subunit
MEAFHTHTGIGVPLRRSNVDTDQIIPAVFLKRVTRTGFEDGLFATWRADPSFVLNLSPFDRGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFHGNAGKAGLLAAQVAQDDIELLWKLIEQSPGLEITVNLQDRNITAATVVLPFTIDDYTAWRLLEGLDDIALTLRKLDEIEVFESARPEWKPRTMPTS
>NZ_CP011883.2|WP_054880365.1|1402977_1403619_+|HU-family-DNA-binding-protein
MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQRLPSEGPAVKRGVATSAAKKAVKKAPAKKAAAKKVTAKKAATKAPARKAAPAKKAIKAVKAPAKKITAAKKAPAKKATKAVKKVVAKAPVRKAATKAPAKKAAAKKAPAKKATAAKRGRR
>NZ_CP011883.2|WP_054880364.1|1403687_1404623_-|NUDIX-hydrolase
MSIPNSSRRRPDGQTVYAAGAVLWRPGNSDPAVEIAVIHRPRYDDWSLPKGKVDPGETAPVAAVREVFEETGHHAALGARLVAVNYPIDQRVKKVYYWAARSVGGKFVAGSEVDELLWLPVADAMKRLDYAQDRKVLRRFAKQPADTRTVLIVRHGTAGRKSRFSGDDTGRPLDKRGRAQAEALVPQLLAFGATDVYAADRLRCHQTVEPLAAELGVPIHNEPSLTEEAYAKNPKRGRRRVLRIAAQPGTPVICSQGKVIPDLIAWWCEHNGVRPDKSRNRKGSTWVLSLSAGRLTAADHIGGALAANVQA

Crispr_ID: NZ_CP011883_7

• CRISPR_ID: NZ_CP011883_7
• CRISPR_location: 1500271-1500394
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_7

Consensus_repeat	Method
ATCGGCGCCGGTGACGATGCAGAGCGCAGCGATGAGG	CRISPRCasFinder

spacers of NZ_CP011883_7

>7.1|1500308|50|NZ_CP011883|CRISPRCasFinder
TGGGGGTACCTCCCAGCCGCGAAGCGGCGAGGGGGAGAACGGCGCGAATG

CRISPR arrays and Neighbor proteins around NZ_CP011883_7

CRISPR arrays

The CRISPR arrays of NZ_CP011883_7

>merge|NZ_CP011883|7|1500271-1500394|CRISPRCasFinder
ATCGGCGCCGGTGACGATGCAGAGCGCAGCGATGAGGTGGGGGTACCTCCCAGCCGCGAAGCGGCGAGGGGGAGAACGGCGCGAATGATCGGTGCCGGTGACGATGCAGAGCGCAGCGATGAGG

>NZ_CP011883|7|7|1500271-1500394|CRISPRCasFinder
ATCGGCGCCGGTGACGATGCAGAGCGCAGCGATGAGG	TGGGGGTACCTCCCAGCCGCGAAGCGGCGAGGGGGAGAACGGCGCGAATG
ATCGGTGCCGGTGACGATGCAGAGCGCAGCGATGAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_047315460.1|1503687_1504596_+|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl|CDD|223856
NZ_CP011883.2|WP_082607553.1|1501959_1503117_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl|CDD|184689
NZ_CP011883.2|WP_054880325.1|1498186_1498921_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP011883.2|WP_054880324.1|1500995_1501937_+|phosphatidate-cytidylyltransferase	unknown	unknown	gnl|CDD|366491
NZ_CP011883.2|WP_054880327.1|1495373_1495793_-|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NZ_CP011883.2|WP_047315463.1|1499421_1500261_+|UMP-kinase	unknown	unknown	gnl|CDD|234735
NZ_CP011883.2|WP_168162516.1|1504970_1505273_-|DUF2631-domain-containing-protein	unknown	unknown	gnl|CDD|371308
NZ_CP011883.2|WP_047315467.1|1493963_1495370_+|amidase	unknown	unknown	gnl|CDD|181154
NZ_CP011883.2|WP_054880322.1|1506562_1507786_+|site-2-protease-family-protein	unknown	unknown	gnl|CDD|308008
NZ_CP011883.2|WP_047315462.1|1500407_1500965_+|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NZ_CP011883.2|WP_047315468.1|1493082_1493913_+|elongation-factor-Ts	unknown	unknown	gnl|CDD|236491
NZ_CP011883.2|WP_047315465.1|1495915_1497526_+|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_CP011883.2|WP_156406877.1|1491407_1491938_-|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl|CDD|366703
NZ_CP011883.2|WP_047315455.1|1509052_1509907_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|225928
NZ_CP011883.2|WP_054880323.1|1505369_1506554_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl|CDD|235472
NZ_CP011883.2|WP_054881021.1|1490486_1491380_+|tyrosine-recombinase-XerC	unknown	unknown	gnl|CDD|234698
NZ_CP011883.2|WP_047315456.1|1507818_1508997_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl|CDD|234737
NZ_CP011883.2|WP_047315469.1|1492236_1493070_+|30S-ribosomal-protein-S2	unknown	unknown	gnl|CDD|235396
NZ_CP011883.2|WP_047315519.1|1503173_1503683_+|protein-disulfide-oxidoreductase	unknown	unknown	gnl|CDD|239309
NZ_CP011883.2|WP_054880326.1|1497620_1498118_+|MPT63-family-protein	unknown	unknown	gnl|CDD|370335

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_047315460.1|1503687_1504596_+|cytochrome-c-biogenesis-protein-CcdA	gnl|CDD|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.53418e-25
NZ_CP011883.2|WP_082607553.1|1501959_1503117_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl|CDD|184689	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP011883.2|WP_054880325.1|1498186_1498921_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.58269e-34
NZ_CP011883.2|WP_054880324.1|1500995_1501937_+|phosphatidate-cytidylyltransferase	gnl|CDD|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	8.45829e-69
NZ_CP011883.2|WP_054880327.1|1495373_1495793_-|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.39951e-21
NZ_CP011883.2|WP_047315463.1|1499421_1500261_+|UMP-kinase	gnl|CDD|234735	PRK00358, pyrH, uridylate kinase; Provisional.	2.34924e-132
NZ_CP011883.2|WP_168162516.1|1504970_1505273_-|DUF2631-domain-containing-protein	gnl|CDD|371308	pfam10939, DUF2631, Protein of unknown function (DUF2631). This is s bacterial family of proteins with unknown function.	1.30693e-32
NZ_CP011883.2|WP_047315467.1|1493963_1495370_+|amidase	gnl|CDD|181154	PRK07869, PRK07869, amidase; Provisional.	0
NZ_CP011883.2|WP_054880322.1|1506562_1507786_+|site-2-protease-family-protein	gnl|CDD|308008	pfam02163, Peptidase_M50, Peptidase family M50.	1.26771e-55
NZ_CP011883.2|WP_047315462.1|1500407_1500965_+|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.1848e-104
NZ_CP011883.2|WP_047315468.1|1493082_1493913_+|elongation-factor-Ts	gnl|CDD|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.0036e-122
NZ_CP011883.2|WP_047315465.1|1495915_1497526_+|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.96077e-154
NZ_CP011883.2|WP_156406877.1|1491407_1491938_-|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl|CDD|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	6.91024e-17
NZ_CP011883.2|WP_047315455.1|1509052_1509907_+|GNAT-family-N-acetyltransferase	gnl|CDD|225928	COG3393, COG3393, Predicted acetyltransferase [General function prediction only].	2.55081e-73
NZ_CP011883.2|WP_054880323.1|1505369_1506554_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl|CDD|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP011883.2|WP_054881021.1|1490486_1491380_+|tyrosine-recombinase-XerC	gnl|CDD|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	2.38803e-131
NZ_CP011883.2|WP_047315456.1|1507818_1508997_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl|CDD|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP011883.2|WP_047315469.1|1492236_1493070_+|30S-ribosomal-protein-S2	gnl|CDD|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.01243e-174
NZ_CP011883.2|WP_047315519.1|1503173_1503683_+|protein-disulfide-oxidoreductase	gnl|CDD|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	1.8571e-40
NZ_CP011883.2|WP_054880326.1|1497620_1498118_+|MPT63-family-protein	gnl|CDD|370335	pfam09167, DUF1942, Domain of unknown function (DUF1942). Members of this family of bacterial proteins assume a beta-sandwich structure consisting of two antiparallel beta-sheets similar to an immunoglobulin-like fold, with an additional small, antiparallel beta-sheet. The longer-stranded beta-sheet is made up of four antiparallel beta-strands. The shorter-stranded beta-sheet consists of five beta-strands, four of these beta-strands form an antiparallel beta-sheet. The exact function of this family of proteins is unknown, though a putative role includes involvement in host-bacterial interactions involved in endocytosis or phagocytosis, possibly during bacterial internalisation.	1.23541e-41

Protein sequences

>NZ_CP011883.2|WP_047315463.1|1499421_1500261_+|UMP-kinase
MTESWESQVAGSAAPKPQLMSANGVPAAAADREERLSHAGHPGGRSKYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIAEVVRGGVQVAVVIGGGNFFRGAQLQQRGMERTRSDYMGMLGTVMNSLALQDFLEKEGIATRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTVISHREVIDRGLRVADATAFSLCMDNGMPILVFNLLTNGNIARAVAGEKIGTLVTT
>NZ_CP011883.2|WP_054880325.1|1498186_1498921_-|response-regulator-transcription-factor
MDVLLLSDEDDFESVVPTLNLFAQTIRQAPLTERVAGDYHSADVAVIDARTELAAARRVCRRLTANAPTVAVVAIVTPADFVAVDVDWHFDDVLLPAASAAELQARLRLAITRRRSALDCTLKFGDLVLHPASYSGTLEAKDLALTLTEFKLLNFLVQHAGRAFTRTRLIHEVWSYDCNGRIRTVDVHVRRLRAKLGVEHESMVDTVRGVGYMAVTPPQPQWIIREPIQSPVWTSTPPWGLIAR
>NZ_CP011883.2|WP_054880326.1|1497620_1498118_+|MPT63-family-protein
MKLAAGAAGIAAVGIFAAATVVASPIIQSFGTSETLVDGSLITVYTVSNLQPASVTVPGYTPQGQLWQADVNAGVTSGVVTPVVSDFNARTNDNQTYRVISVSPTPDGFGPAPISQGGQANGKVYFDVTGAPPTNVVYNDGIEDVLVWTTNGSPNSPVPNSLPHS
>NZ_CP011883.2|WP_047315465.1|1495915_1497526_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MEKAHPAAAGRSLPAAGTKQSDTSEHRYPDKLDAGLLRIAGVCVLASLMSNLDSTVVSVAQRTFIRAFESTQAVVAWTMTGYTLALAAAIPLAGWAADRFGTKRLFMGSVLAFTLGSLLCATASNIGALIVFRIVQGLGGGILMPLSLAILTRNAGPKRLGRLMGVVGIPMLLGPIGGPILGGWMIDTYGWQWIFWINLPIGLTAFGLAALLFPRDHSTLSEPFDVLGMLLLSPGLAMFLYGVSAIPSRGTAADPHVWIPSGMGLLLIAGFVFNALYHADHPLIDLRLFKNRVVMLANSAMALFAVAFFGTLLLFPSYLQQVQHQTPTQSGVHLIPQGLGAMLAMPLAGAFMDKYGPRKVVLAGITLIGACLVIFAYGSARQADYLPTLLVGLAIMGMGMGCTMMPLAGAAVQTLAPHQIARGSTLISVNQQAAGSVGTALMSMILTNQFNRSENISAAHKLAALQDNAARRGVPVDPSTMPWQTVAPDFPSNVLHDLSQAYATVFVLAAVLVGSTIIPAVFLPKMPARQISTVAH
>NZ_CP011883.2|WP_054880327.1|1495373_1495793_-|MarR-family-transcriptional-regulator
MVQTEDAPLGYLLYRVGAALRPEVAAMLRPLGLTLPEFVCLRMLSMSPGLSSAELSRNAGVTPQAMNAVLRKLEDTGAVARPASASSGRALPATLTGPGRALLKRAEGAVRIADGRILAKLSAPQQREFKRMLDKLGSD
>NZ_CP011883.2|WP_047315467.1|1493963_1495370_+|amidase
MQRVHAFGDDALGDFDAVGLADAIRAGWISRADVVEAAIARTEAVNPALNGLAYEAFARARHTASNPAGGFFSGVPTFIKDNIDVAGQPTMRGSDAWVPRNAFDDGEFTRLYLATGPVSLGKTQLSEFGFSASAEHLRLGPVRNPWDTDYTAGASSSGSGAFVAAGVVPMAHANDGGGSIRIPASCNGLVGLKPSRGRLPLDPELRRLPVGIVANGVLSRSVRDTAAFYREAERIWRNPKLPPVGDVTRPGRQRLRIAVVTRSVQRECSPELRELTLKAAGLLEELGHRVERVEEPPVPPNFPDDFVLYWGLLAAMQVRTGRLAFGNTFDRTKLDSLTLGLDRHTSRNMHRLPKAIMRLRRLRRRTAEFFATYDVLLTPTVADETPRIGYLAPTDYQQVIDRLMSWVAFTPLQNVTGEPAISLPLAQSADGMPVGMMFTADFGQEAQLLELAYELEEARPWARIQTPD
>NZ_CP011883.2|WP_047315468.1|1493082_1493913_+|elongation-factor-Ts
MANFTAADVKRLRELTGAGMLDCKNALAETDGNFDKAVEALRIKGAKDVGKRAERATAEGLVAARAGALIELNCETDFVAKNAEFQALADQIVGAAAAAKTVDVDALKGASVGDKTVEQAIAELSAKIGEKLELRRVAIFGGTVETYLHKRAADLPPAVGVLVEYGPGADAAASTAAAHAVALQIAALKARFLSRDDVPEDVVVSERRIAEETAKAEGKPEQALPKIVEGRLNGFFKDSVLLEQPSVSDNKKTVKALLDEAGVTVTRFVRFEVGQA
>NZ_CP011883.2|WP_047315469.1|1492236_1493070_+|30S-ribosomal-protein-S2
MAVVTMKQLLDSGTHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTFIDKAYEFVKETVAHGGSVLFVGTKKQAQESVAAEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILGLTREKNKLERSLGGIRDMAKVPSAIWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDEVDYPIPGNDDAIRSAALLTKVIASAVAEGLQARAGLGRGDGKPEAEAVEPLPEWEQELLAGAGASAPTDLGAGVSETTTDPS
>NZ_CP011883.2|WP_156406877.1|1491407_1491938_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MALVSAAPAVADDARLDWPLRPRPVVVRGFNAPSPDWNPGHRGVDLAGAPGQPVYAAGEATVVFAGLLAGRPVVSLAHPGGLHTSYEPVRAAVRAGQPVTAQTVIGELVAGHLGCPAAACLHWGAMWGPASGADYVDPLGLLKSTAIRLKPLAWRRVCFYGFECAAVVTPPGVSAP
>NZ_CP011883.2|WP_054881021.1|1490486_1491380_+|tyrosine-recombinase-XerC
MAILDEFDEYLALQCGRSAHTRRAYLGDLRSLLAHLEERGSGLDQLSLPALRSWLAAAAGAGAARTTLARRTSAVKAFTAWAKRRGLLAADPAGRLQVPKAHRTLPAVLRQDQALQAMAAAQSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRYRLVRVLGKGNKQRTAPFGVPAADALRGWLDDGRPALVTAESGSALLLGARGRRLDVRQARTVVHQTVAAVASAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA
>NZ_CP011883.2|WP_047315462.1|1500407_1500965_+|ribosome-recycling-factor
MIDEALFDAEEKMEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGSTTPITQLASINVPEARLVVIKPYEATQLHAIETAIRNSDLGVNPSNDGTLIRVAVPQLTEERRRELVKQAKGKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVSRAEKDLDKTTHQYVTQIDELVKHKEGELLEV
>NZ_CP011883.2|WP_054880324.1|1500995_1501937_+|phosphatidate-cytidylyltransferase
MAPTDPGTGTPPDEPAQGAKNAMQQPAKKTSRAGRNLPAAIAVGLSIGGALVATLVFAPRIWVGLCAGAIFVASHEVVRRLREAGYVIPVIPLLIGGQLTVWLTWPYRAAGALAGFGGTVVVCMIWRLFLRDDSRRHESQEALAGPPPASNYLRDASATVFLAAWVPLFASFAALLVYPKDGAGRVFCLMIAVVASDVGGYTVGVLFGKHPMVPRISPNKSWEGFVGSLVCGITATVLTATFLAGKMPWVGAVLGFVLVLTCTLGDLVESQVKRDLGIKDMGRLLPGHGGLMDRLDGVLPSAVAAWTMLTLLP
>NZ_CP011883.2|WP_082607553.1|1501959_1503117_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MAQELVFSEPRAARPPRHLADLDAAGRTSAVVELGLPAFRAKQLAHQYYGRLLADPCQMTDLPAAVRDLIAETMFPKLLTAAREVTCDAGQTRKMLWRAVDGSTFESVLMRYRQRNTLCISSQAGCGMACPFCATGQGGLSRNLSAAEILEQVRAGAAALRDDFGDRLSNVVFMGMGEPLANYARVLAAVRRITEPSGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDTLVPINNRWKISEALEAATYYAEVTGRRVSVEYALIRDVNDQAWRADMLGRRLHRALGPLVHVNLIPLNPTPGSDWDASPKVAEREFVRRVRSHGVSCTVRDTRGREISAACGQLAAEGGRARSAGESDIACGQLAAEGGRAQ
>NZ_CP011883.2|WP_047315519.1|1503173_1503683_+|protein-disulfide-oxidoreductase
MIIRLLSSMKLFAVAVFGGALILGLAAAPRAVAADDRLNFTGTTLSGAPFNGASLQGKPAVLWFWTPWCPFCNAEAPGLSQVAAANPAVTFVGIAAHSDVGAMQGFVSKYNLNFTNLNDADSSIWARYNVPWQPAWVFYRADGSSTFVNNPTSAMSQQDLSDRVAALRS
>NZ_CP011883.2|WP_047315460.1|1503687_1504596_+|cytochrome-c-biogenesis-protein-CcdA
MDQGLVGLAFAAGLVAALNPCGFAMLPGYLLLVVRGHPQKAESSERSAATIRPHGRINVLGRAVAATVGMALGFLTVFGLFGALTISAAATVQRYLPYATVVIGVVLVGLGVWLLSGRELTALTPRSFGVRWAPSPSRMASMYGYGVSYAVASLSCTVGPFLAVTAAGLRGGSLVGSVVIYLAYVAGLTLVVGVLAIAAATASSALADRLRRILPFVNRVSGALLVLVGLYVGYYGLYELRLFSATTAAQAHPHDGVISVAGRLQGVLAGWVHQHGVWPWVAALVVLVIGALAGDWYRRARR
>NZ_CP011883.2|WP_168162516.1|1504970_1505273_-|DUF2631-domain-containing-protein
MSDSSHQHPIRSGGITVASTEVEHYAGVDPAEVPSAAWGWSRINHRTWHIVGLFAVGLLLAMLRGNHVGHVENWYLIGFAALVLVVLIRDLLGRRRGWIR
>NZ_CP011883.2|WP_054880323.1|1505369_1506554_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MTNPTEGHAGDRLRVLVLGSTGSIGTQALDVIAANPDRFEVVGLAAGGAHLDTLLRQRAETGVTNIAIADDRAAQLAGDIPYHGPDAVTRLVEETEADVVLNALVGALGLRPTLAALQTGARLALANKESLVAGGPLVLAAARPGQIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWAAADLERVTPEQAGAHPTWSMGPMNTLNSASLVNKGLELIETNLLFGISYDRIEVVVHPQSIVHSMVTFIDGSTIAQASPPDMKLPISLALGWPQRVGGAARACAFTTASTWEFEPLDTDVFPAVELARHAGQVGGCMTAIYNAANEEAAAAFLQGRISFPTIVGTIAEVVRAADQWAVEPATVDDVLEAQRWARERAQRELSGLVLERS
>NZ_CP011883.2|WP_054880322.1|1506562_1507786_+|site-2-protease-family-protein
MMFALGIVLFAIAILISVALHECGHMWVARATGMKVRRYFVGFGPTLWSTRRGETEYGIKAVPLGGFCDIAGMTSVEELAPGESDRAMYKQATWKRVAVLFAGPAMNFVICLVLIYGIALVWGLPNLHPPAKAVIGETACVAPELTQGKLGSCTGPGPAALAGIRAGDVVVKVGDNSVSTFDDMAAAVRKLHGTVPIVFERDGTTITSYVDITPTQRFLTHGVNEQGGQPEPVTVGAIGVGAPRLVPTHYGVFSAVPATVAFAGGLTVEVGKALVTIPTKLGALVHAIGGGQRDPQTPMSVVGASIIGGDTVDHGLWVAFWFFLAQLNLILGAINLVPLLPFDGGHIAIAVFEKIRNLVRSARGMVAAAPVNYLKLMPATYVVLVFVVGYMLLTVTADLVNPIRLFQ
>NZ_CP011883.2|WP_047315456.1|1507818_1508997_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MTIGLGMPEAPVPTLAPRRSTRQVMVGNVGVGSDHQISVQSMCTTKTHDVNSTLQQIAELTAAGCDIVRVACPRQEDADALAEIARHSKIPVIADIHFQPKYIFAAIDAGCAAVRVNPGNIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMDKYGKATPEALVESALWEASLFEEHGFGNIKISVKHHDPVVMVAAYEQLAAQCDYPLHLGVTEAGPAFQGTVKSAVAFGALLSKGIGDTIRVSLSAPPVEEVKVGNQILESLNLRPRSLEIVSCPSCGRAQVDVYKLANEVSAGLDGLEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPEAQIVETLIEEAMRLASEMGTEKSGDHGPETTRSGSPVVTVS
>NZ_CP011883.2|WP_047315455.1|1509052_1509907_+|GNAT-family-N-acetyltransferase
MSAPPIFRLVGERRVSVVRDAAAVWRVLDDDPVGSCMVAARIAEHGIDPTAIGGELWTRRSVDESLCFAGANLIPLRGGRDDLTAFADAAMSGSRRCSSLVGKAELVMPMWRRLESAWGPARDVREHQPLMALKSYPSCEIDPAVRQVRPAELDAYLVAAVDMFIGEVGVDPRLGDGGRGYRRRVASLIAAGRAWARFEQGQVVFKAEVGSQSPAVGQIQGVWVHPEWRGLGLGTSGTATLAGVIVGSGRVASLYVNNFNTVARAAYARVGFVEVGTFATVLLD

Crispr_ID: NZ_CP011883_8

• CRISPR_ID: NZ_CP011883_8
• CRISPR_location: 1503016-1503110
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_8

Consensus_repeat	Method
GCCTGCGGACAGCTGGCCGCCGAAGGCGGGCGAGC	CRISPRCasFinder

spacers of NZ_CP011883_8

>8.1|1503051|25|NZ_CP011883|CRISPRCasFinder
TCGGAGCGCGGGCGAATCAGACATA

CRISPR arrays and Neighbor proteins around NZ_CP011883_8

CRISPR arrays

The CRISPR arrays of NZ_CP011883_8

>merge|NZ_CP011883|8|1503016-1503110|CRISPRCasFinder
GCCTGCGGACAGCTGGCCGCCGAAGGCGGGCGAGCTCGGAGCGCGGGCGAATCAGACATAGCCTGCGGACAGCTGGCCGCCGAAGGCGGGCGAGC

>NZ_CP011883|8|8|1503016-1503110|CRISPRCasFinder
GCCTGCGGACAGCTGGCCGCCGAAGGCGGGCGAGC	TCGGAGCGCGGGCGAATCAGACATA
GCCTGCGGACAGCTGGCCGCCGAAGGCGGGCGAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_052915681.1|1512051_1512561_+|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl|CDD|334450
NZ_CP011883.2|WP_047315460.1|1503687_1504596_+|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl|CDD|223856
NZ_CP011883.2|WP_054880322.1|1506562_1507786_+|site-2-protease-family-protein	unknown	unknown	gnl|CDD|308008
NZ_CP011883.2|WP_054880325.1|1498186_1498921_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP011883.2|WP_054880327.1|1495373_1495793_-|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NZ_CP011883.2|WP_047315463.1|1499421_1500261_+|UMP-kinase	unknown	unknown	gnl|CDD|234735
NZ_CP011883.2|WP_054880321.1|1510086_1511910_+|penicillin-binding-protein	unknown	unknown	gnl|CDD|223839
NZ_CP011883.2|WP_168162516.1|1504970_1505273_-|DUF2631-domain-containing-protein	unknown	unknown	gnl|CDD|371308
NZ_CP011883.2|WP_047315467.1|1493963_1495370_+|amidase	unknown	unknown	gnl|CDD|181154
NZ_CP011883.2|WP_047315462.1|1500407_1500965_+|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NZ_CP011883.2|WP_054880324.1|1500995_1501937_+|phosphatidate-cytidylyltransferase	unknown	unknown	gnl|CDD|366491
NZ_CP011883.2|WP_047315465.1|1495915_1497526_+|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_CP011883.2|WP_047315455.1|1509052_1509907_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|225928
NZ_CP011883.2|WP_047315468.1|1493082_1493913_+|elongation-factor-Ts	unknown	unknown	gnl|CDD|236491
NZ_CP011883.2|WP_054880323.1|1505369_1506554_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl|CDD|235472
NZ_CP011883.2|WP_047315456.1|1507818_1508997_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl|CDD|234737
NZ_CP011883.2|WP_047315469.1|1492236_1493070_+|30S-ribosomal-protein-S2	unknown	unknown	gnl|CDD|235396
NZ_CP011883.2|WP_047315519.1|1503173_1503683_+|protein-disulfide-oxidoreductase	unknown	unknown	gnl|CDD|239309
NZ_CP011883.2|WP_047315453.1|1512706_1513564_+|type-I-methionyl-aminopeptidase	unknown	unknown	gnl|CDD|237252
NZ_CP011883.2|WP_054880326.1|1497620_1498118_+|MPT63-family-protein	unknown	unknown	gnl|CDD|370335

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_052915681.1|1512051_1512561_+|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl|CDD|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	1.03341e-06
NZ_CP011883.2|WP_047315460.1|1503687_1504596_+|cytochrome-c-biogenesis-protein-CcdA	gnl|CDD|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.53418e-25
NZ_CP011883.2|WP_054880322.1|1506562_1507786_+|site-2-protease-family-protein	gnl|CDD|308008	pfam02163, Peptidase_M50, Peptidase family M50.	1.26771e-55
NZ_CP011883.2|WP_054880325.1|1498186_1498921_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.58269e-34
NZ_CP011883.2|WP_054880327.1|1495373_1495793_-|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.39951e-21
NZ_CP011883.2|WP_047315463.1|1499421_1500261_+|UMP-kinase	gnl|CDD|234735	PRK00358, pyrH, uridylate kinase; Provisional.	2.34924e-132
NZ_CP011883.2|WP_054880321.1|1510086_1511910_+|penicillin-binding-protein	gnl|CDD|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	6.06765e-80
NZ_CP011883.2|WP_168162516.1|1504970_1505273_-|DUF2631-domain-containing-protein	gnl|CDD|371308	pfam10939, DUF2631, Protein of unknown function (DUF2631). This is s bacterial family of proteins with unknown function.	1.30693e-32
NZ_CP011883.2|WP_047315467.1|1493963_1495370_+|amidase	gnl|CDD|181154	PRK07869, PRK07869, amidase; Provisional.	0
NZ_CP011883.2|WP_047315462.1|1500407_1500965_+|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.1848e-104
NZ_CP011883.2|WP_054880324.1|1500995_1501937_+|phosphatidate-cytidylyltransferase	gnl|CDD|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	8.45829e-69
NZ_CP011883.2|WP_047315465.1|1495915_1497526_+|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.96077e-154
NZ_CP011883.2|WP_047315455.1|1509052_1509907_+|GNAT-family-N-acetyltransferase	gnl|CDD|225928	COG3393, COG3393, Predicted acetyltransferase [General function prediction only].	2.55081e-73
NZ_CP011883.2|WP_047315468.1|1493082_1493913_+|elongation-factor-Ts	gnl|CDD|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.0036e-122
NZ_CP011883.2|WP_054880323.1|1505369_1506554_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl|CDD|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP011883.2|WP_047315456.1|1507818_1508997_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl|CDD|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP011883.2|WP_047315469.1|1492236_1493070_+|30S-ribosomal-protein-S2	gnl|CDD|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.01243e-174
NZ_CP011883.2|WP_047315519.1|1503173_1503683_+|protein-disulfide-oxidoreductase	gnl|CDD|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	1.8571e-40
NZ_CP011883.2|WP_047315453.1|1512706_1513564_+|type-I-methionyl-aminopeptidase	gnl|CDD|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	6.96415e-157
NZ_CP011883.2|WP_054880326.1|1497620_1498118_+|MPT63-family-protein	gnl|CDD|370335	pfam09167, DUF1942, Domain of unknown function (DUF1942). Members of this family of bacterial proteins assume a beta-sandwich structure consisting of two antiparallel beta-sheets similar to an immunoglobulin-like fold, with an additional small, antiparallel beta-sheet. The longer-stranded beta-sheet is made up of four antiparallel beta-strands. The shorter-stranded beta-sheet consists of five beta-strands, four of these beta-strands form an antiparallel beta-sheet. The exact function of this family of proteins is unknown, though a putative role includes involvement in host-bacterial interactions involved in endocytosis or phagocytosis, possibly during bacterial internalisation.	1.23541e-41

Protein sequences

>NZ_CP011883.2|WP_054880324.1|1500995_1501937_+|phosphatidate-cytidylyltransferase
MAPTDPGTGTPPDEPAQGAKNAMQQPAKKTSRAGRNLPAAIAVGLSIGGALVATLVFAPRIWVGLCAGAIFVASHEVVRRLREAGYVIPVIPLLIGGQLTVWLTWPYRAAGALAGFGGTVVVCMIWRLFLRDDSRRHESQEALAGPPPASNYLRDASATVFLAAWVPLFASFAALLVYPKDGAGRVFCLMIAVVASDVGGYTVGVLFGKHPMVPRISPNKSWEGFVGSLVCGITATVLTATFLAGKMPWVGAVLGFVLVLTCTLGDLVESQVKRDLGIKDMGRLLPGHGGLMDRLDGVLPSAVAAWTMLTLLP
>NZ_CP011883.2|WP_047315462.1|1500407_1500965_+|ribosome-recycling-factor
MIDEALFDAEEKMEKAVSVARDDLSTIRTGRANPGMFSRIVIDYYGSTTPITQLASINVPEARLVVIKPYEATQLHAIETAIRNSDLGVNPSNDGTLIRVAVPQLTEERRRELVKQAKGKGEDAKVSVRNIRRKAMEELHRIRKDGEAGEDEVSRAEKDLDKTTHQYVTQIDELVKHKEGELLEV
>NZ_CP011883.2|WP_047315463.1|1499421_1500261_+|UMP-kinase
MTESWESQVAGSAAPKPQLMSANGVPAAAADREERLSHAGHPGGRSKYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIAEVVRGGVQVAVVIGGGNFFRGAQLQQRGMERTRSDYMGMLGTVMNSLALQDFLEKEGIATRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTVISHREVIDRGLRVADATAFSLCMDNGMPILVFNLLTNGNIARAVAGEKIGTLVTT
>NZ_CP011883.2|WP_054880325.1|1498186_1498921_-|response-regulator-transcription-factor
MDVLLLSDEDDFESVVPTLNLFAQTIRQAPLTERVAGDYHSADVAVIDARTELAAARRVCRRLTANAPTVAVVAIVTPADFVAVDVDWHFDDVLLPAASAAELQARLRLAITRRRSALDCTLKFGDLVLHPASYSGTLEAKDLALTLTEFKLLNFLVQHAGRAFTRTRLIHEVWSYDCNGRIRTVDVHVRRLRAKLGVEHESMVDTVRGVGYMAVTPPQPQWIIREPIQSPVWTSTPPWGLIAR
>NZ_CP011883.2|WP_054880326.1|1497620_1498118_+|MPT63-family-protein
MKLAAGAAGIAAVGIFAAATVVASPIIQSFGTSETLVDGSLITVYTVSNLQPASVTVPGYTPQGQLWQADVNAGVTSGVVTPVVSDFNARTNDNQTYRVISVSPTPDGFGPAPISQGGQANGKVYFDVTGAPPTNVVYNDGIEDVLVWTTNGSPNSPVPNSLPHS
>NZ_CP011883.2|WP_047315465.1|1495915_1497526_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MEKAHPAAAGRSLPAAGTKQSDTSEHRYPDKLDAGLLRIAGVCVLASLMSNLDSTVVSVAQRTFIRAFESTQAVVAWTMTGYTLALAAAIPLAGWAADRFGTKRLFMGSVLAFTLGSLLCATASNIGALIVFRIVQGLGGGILMPLSLAILTRNAGPKRLGRLMGVVGIPMLLGPIGGPILGGWMIDTYGWQWIFWINLPIGLTAFGLAALLFPRDHSTLSEPFDVLGMLLLSPGLAMFLYGVSAIPSRGTAADPHVWIPSGMGLLLIAGFVFNALYHADHPLIDLRLFKNRVVMLANSAMALFAVAFFGTLLLFPSYLQQVQHQTPTQSGVHLIPQGLGAMLAMPLAGAFMDKYGPRKVVLAGITLIGACLVIFAYGSARQADYLPTLLVGLAIMGMGMGCTMMPLAGAAVQTLAPHQIARGSTLISVNQQAAGSVGTALMSMILTNQFNRSENISAAHKLAALQDNAARRGVPVDPSTMPWQTVAPDFPSNVLHDLSQAYATVFVLAAVLVGSTIIPAVFLPKMPARQISTVAH
>NZ_CP011883.2|WP_054880327.1|1495373_1495793_-|MarR-family-transcriptional-regulator
MVQTEDAPLGYLLYRVGAALRPEVAAMLRPLGLTLPEFVCLRMLSMSPGLSSAELSRNAGVTPQAMNAVLRKLEDTGAVARPASASSGRALPATLTGPGRALLKRAEGAVRIADGRILAKLSAPQQREFKRMLDKLGSD
>NZ_CP011883.2|WP_047315467.1|1493963_1495370_+|amidase
MQRVHAFGDDALGDFDAVGLADAIRAGWISRADVVEAAIARTEAVNPALNGLAYEAFARARHTASNPAGGFFSGVPTFIKDNIDVAGQPTMRGSDAWVPRNAFDDGEFTRLYLATGPVSLGKTQLSEFGFSASAEHLRLGPVRNPWDTDYTAGASSSGSGAFVAAGVVPMAHANDGGGSIRIPASCNGLVGLKPSRGRLPLDPELRRLPVGIVANGVLSRSVRDTAAFYREAERIWRNPKLPPVGDVTRPGRQRLRIAVVTRSVQRECSPELRELTLKAAGLLEELGHRVERVEEPPVPPNFPDDFVLYWGLLAAMQVRTGRLAFGNTFDRTKLDSLTLGLDRHTSRNMHRLPKAIMRLRRLRRRTAEFFATYDVLLTPTVADETPRIGYLAPTDYQQVIDRLMSWVAFTPLQNVTGEPAISLPLAQSADGMPVGMMFTADFGQEAQLLELAYELEEARPWARIQTPD
>NZ_CP011883.2|WP_047315468.1|1493082_1493913_+|elongation-factor-Ts
MANFTAADVKRLRELTGAGMLDCKNALAETDGNFDKAVEALRIKGAKDVGKRAERATAEGLVAARAGALIELNCETDFVAKNAEFQALADQIVGAAAAAKTVDVDALKGASVGDKTVEQAIAELSAKIGEKLELRRVAIFGGTVETYLHKRAADLPPAVGVLVEYGPGADAAASTAAAHAVALQIAALKARFLSRDDVPEDVVVSERRIAEETAKAEGKPEQALPKIVEGRLNGFFKDSVLLEQPSVSDNKKTVKALLDEAGVTVTRFVRFEVGQA
>NZ_CP011883.2|WP_047315469.1|1492236_1493070_+|30S-ribosomal-protein-S2
MAVVTMKQLLDSGTHFGHQTRRWNPKMKRFIFTDRNGIYIIDLQQTLTFIDKAYEFVKETVAHGGSVLFVGTKKQAQESVAAEATRVGMPYVNQRWLGGMLTNFSTVHKRLQRLKELEAMEQTGGFEGRTKKEILGLTREKNKLERSLGGIRDMAKVPSAIWVVDTNKEHIAVGEARKLGIPVIAILDTNCDPDEVDYPIPGNDDAIRSAALLTKVIASAVAEGLQARAGLGRGDGKPEAEAVEPLPEWEQELLAGAGASAPTDLGAGVSETTTDPS
>NZ_CP011883.2|WP_047315519.1|1503173_1503683_+|protein-disulfide-oxidoreductase
MIIRLLSSMKLFAVAVFGGALILGLAAAPRAVAADDRLNFTGTTLSGAPFNGASLQGKPAVLWFWTPWCPFCNAEAPGLSQVAAANPAVTFVGIAAHSDVGAMQGFVSKYNLNFTNLNDADSSIWARYNVPWQPAWVFYRADGSSTFVNNPTSAMSQQDLSDRVAALRS
>NZ_CP011883.2|WP_047315460.1|1503687_1504596_+|cytochrome-c-biogenesis-protein-CcdA
MDQGLVGLAFAAGLVAALNPCGFAMLPGYLLLVVRGHPQKAESSERSAATIRPHGRINVLGRAVAATVGMALGFLTVFGLFGALTISAAATVQRYLPYATVVIGVVLVGLGVWLLSGRELTALTPRSFGVRWAPSPSRMASMYGYGVSYAVASLSCTVGPFLAVTAAGLRGGSLVGSVVIYLAYVAGLTLVVGVLAIAAATASSALADRLRRILPFVNRVSGALLVLVGLYVGYYGLYELRLFSATTAAQAHPHDGVISVAGRLQGVLAGWVHQHGVWPWVAALVVLVIGALAGDWYRRARR
>NZ_CP011883.2|WP_168162516.1|1504970_1505273_-|DUF2631-domain-containing-protein
MSDSSHQHPIRSGGITVASTEVEHYAGVDPAEVPSAAWGWSRINHRTWHIVGLFAVGLLLAMLRGNHVGHVENWYLIGFAALVLVVLIRDLLGRRRGWIR
>NZ_CP011883.2|WP_054880323.1|1505369_1506554_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MTNPTEGHAGDRLRVLVLGSTGSIGTQALDVIAANPDRFEVVGLAAGGAHLDTLLRQRAETGVTNIAIADDRAAQLAGDIPYHGPDAVTRLVEETEADVVLNALVGALGLRPTLAALQTGARLALANKESLVAGGPLVLAAARPGQIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWAAADLERVTPEQAGAHPTWSMGPMNTLNSASLVNKGLELIETNLLFGISYDRIEVVVHPQSIVHSMVTFIDGSTIAQASPPDMKLPISLALGWPQRVGGAARACAFTTASTWEFEPLDTDVFPAVELARHAGQVGGCMTAIYNAANEEAAAAFLQGRISFPTIVGTIAEVVRAADQWAVEPATVDDVLEAQRWARERAQRELSGLVLERS
>NZ_CP011883.2|WP_054880322.1|1506562_1507786_+|site-2-protease-family-protein
MMFALGIVLFAIAILISVALHECGHMWVARATGMKVRRYFVGFGPTLWSTRRGETEYGIKAVPLGGFCDIAGMTSVEELAPGESDRAMYKQATWKRVAVLFAGPAMNFVICLVLIYGIALVWGLPNLHPPAKAVIGETACVAPELTQGKLGSCTGPGPAALAGIRAGDVVVKVGDNSVSTFDDMAAAVRKLHGTVPIVFERDGTTITSYVDITPTQRFLTHGVNEQGGQPEPVTVGAIGVGAPRLVPTHYGVFSAVPATVAFAGGLTVEVGKALVTIPTKLGALVHAIGGGQRDPQTPMSVVGASIIGGDTVDHGLWVAFWFFLAQLNLILGAINLVPLLPFDGGHIAIAVFEKIRNLVRSARGMVAAAPVNYLKLMPATYVVLVFVVGYMLLTVTADLVNPIRLFQ
>NZ_CP011883.2|WP_047315456.1|1507818_1508997_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MTIGLGMPEAPVPTLAPRRSTRQVMVGNVGVGSDHQISVQSMCTTKTHDVNSTLQQIAELTAAGCDIVRVACPRQEDADALAEIARHSKIPVIADIHFQPKYIFAAIDAGCAAVRVNPGNIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMDKYGKATPEALVESALWEASLFEEHGFGNIKISVKHHDPVVMVAAYEQLAAQCDYPLHLGVTEAGPAFQGTVKSAVAFGALLSKGIGDTIRVSLSAPPVEEVKVGNQILESLNLRPRSLEIVSCPSCGRAQVDVYKLANEVSAGLDGLEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPEAQIVETLIEEAMRLASEMGTEKSGDHGPETTRSGSPVVTVS
>NZ_CP011883.2|WP_047315455.1|1509052_1509907_+|GNAT-family-N-acetyltransferase
MSAPPIFRLVGERRVSVVRDAAAVWRVLDDDPVGSCMVAARIAEHGIDPTAIGGELWTRRSVDESLCFAGANLIPLRGGRDDLTAFADAAMSGSRRCSSLVGKAELVMPMWRRLESAWGPARDVREHQPLMALKSYPSCEIDPAVRQVRPAELDAYLVAAVDMFIGEVGVDPRLGDGGRGYRRRVASLIAAGRAWARFEQGQVVFKAEVGSQSPAVGQIQGVWVHPEWRGLGLGTSGTATLAGVIVGSGRVASLYVNNFNTVARAAYARVGFVEVGTFATVLLD
>NZ_CP011883.2|WP_054880321.1|1510086_1511910_+|penicillin-binding-protein
MVAKTSPVSVVSVAAGLLLVAVIAVSGCTPRPDGPGPAAEKFFGALAIGDTATAAQLSDNPNEAREALNAAWAGLQAGRLDAQLLSARYAEDTGTIAYRFTWHLPKNRTWSYDGQLKMARDEGRWQVRWTTTGLHPKLGEHQTFALRADPPRRASVNELGGSDVLVPGYLHHYALDATAAGRALIGTARAVVEALHPFDDTLNDPQLLAEKASSVTEPLSLVTLSPDDHDKVAPAIARLPGVVVIPQAEMLPTDPHFAPAVISEVKKAVSDDLDGQPGWRVVSVNQNGVDVAVLHEVEPSPASSVSITLDRAVQNAAQHAVDSRGGKAMIVVLKPSTGQILAVAQSPGANADGPLATTGLFPPGSTFKMVTAGAAIDRDMATPNTMLGCPGRLDIGHRTIPNYGGFDLGVVPLSRAFASSCNTTFAELSSRMPPRGLTQAANQYGIGLDYQVDGIATVTGSVPPTVDLAERTEDGFGQGRVLVSPFGMALAAATVAAGKTPVPQLIAGRPTRVEGTSTPIAPKVIDSLRPMMRLVVTNGTAKEIAGCCGAVFGKTGEAEFAGGSHSWFAGYRGDLAFAALIVGGGSSEYAVRMTKVMFESLPPDYLT
>NZ_CP011883.2|WP_052915681.1|1512051_1512561_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MINAEPLRQISLKRLLASVRHPTIATADRQGKPWNTPLLAAIDRNARLYWSSHPDSQHSQNIAQNGRAFMVFFDSIQGGLGLYLDTTADRVTDPRTVQEALNLLTKRIPGVCAPLPEFLASEQRIYRAVPHRAWLSDVTHNDSGAVLRDIRVEINLDELQNVAAVLDPL
>NZ_CP011883.2|WP_047315453.1|1512706_1513564_+|type-I-methionyl-aminopeptidase
MPARTALSPGELSPTRPVPALIPRPEYVGKPTAQEGSEPWVQTPEVIEKMRVAGRIAAGALTEAGKAVTPGVTTDELDRIAHEYMVDHGAYPSTLGYKGYPKSCCTSLNEVICHGIPDSTVIADGDIVNIDVTAYIDGVHGDTNATFLAGDVSESHRLLVERTREATTRAINAVKPGRALSIIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVTTTMQPGMTFTIEPMINLGTLDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTMQ

Crispr_ID: NZ_CP011883_9

• CRISPR_ID: NZ_CP011883_9
• CRISPR_location: 1793372-1793453
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_9

Consensus_repeat	Method
GGGTCGCCACGCAGTAAATCTCGTG	CRISPRCasFinder

spacers of NZ_CP011883_9

>9.1|1793397|32|NZ_CP011883|CRISPRCasFinder
GCGATCACAAGCGCGGCGCAGCCGGGCGCAGT

CRISPR arrays and Neighbor proteins around NZ_CP011883_9

CRISPR arrays

The CRISPR arrays of NZ_CP011883_9

>merge|NZ_CP011883|9|1793372-1793453|CRISPRCasFinder
GGGTCGCCACGCAGTAAATCTCGTGGCGATCACAAGCGCGGCGCAGCCGGGCGCAGTGGGTCGCCACGCAGTAAATCTCGTG

>NZ_CP011883|9|9|1793372-1793453|CRISPRCasFinder
GGGTCGCCACGCAGTAAATCTCGTG	GCGATCACAAGCGCGGCGCAGCCGGGCGCAGT
GGGTCGCCACGCAGTAAATCTCGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_054880187.1|1794982_1795660_-|B-4DMT-family-transporter	unknown	unknown	unknown
NZ_CP011883.2|WP_047316562.1|1784473_1785097_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047314358.1|1803122_1803410_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|377587
NZ_CP011883.2|WP_082129631.1|1790186_1791098_+|shikimate-dehydrogenase	unknown	unknown	gnl|CDD|273813
NZ_CP011883.2|WP_047316553.1|1795747_1796878_+|aminopeptidase-P-family-protein	unknown	unknown	gnl|CDD|238525
NZ_CP011883.2|WP_054880188.1|1789030_1790284_+|aminodeoxychorismate-lyase	unknown	unknown	gnl|CDD|224475
NZ_CP011883.2|WP_054880189.1|1785804_1788528_+|alanine--tRNA-ligase	unknown	unknown	gnl|CDD|234701
NZ_CP011883.2|WP_054880186.1|1797458_1797965_+|transcription-antitermination-factor-NusB	unknown	unknown	gnl|CDD|234686
NZ_CP011883.2|WP_047316552.1|1796892_1797456_+|elongation-factor-P	unknown	unknown	gnl|CDD|234788
NZ_CP011883.2|WP_047316555.1|1794548_1794986_+|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|235443
NZ_CP011883.2|WP_054880184.1|1803477_1803777_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_CP011883.2|WP_047316559.1|1788528_1789038_+|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl|CDD|234639
NZ_CP011883.2|WP_156166590.1|1785273_1785663_+|YjbQ-family-protein	unknown	unknown	gnl|CDD|223509
NZ_CP011883.2|WP_047316581.1|1791108_1791537_+|prepilin-peptidase	unknown	unknown	gnl|CDD|224900
NZ_CP011883.2|WP_054881002.1|1783083_1784439_+|replication-associated-recombination-protein-A	unknown	unknown	gnl|CDD|237355
NZ_CP011883.2|WP_047316550.1|1798286_1801139_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224893
NZ_CP011883.2|WP_054881001.1|1791604_1792828_+|chorismate-synthase	unknown	unknown	gnl|CDD|235438
NZ_CP011883.2|WP_047316556.1|1793463_1794549_+|3-dehydroquinate-synthase	unknown	unknown	gnl|CDD|234565
NZ_CP011883.2|WP_054880185.1|1801308_1802559_-|FAD-binding-monooxygenase	unknown	unknown	gnl|CDD|169028
NZ_CP011883.2|WP_047316563.1|1781892_1782945_+|hypothetical-protein	unknown	unknown	gnl|CDD|226757

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_047316552.1|1796892_1797456_+|elongation-factor-P	gnl|CDD|234788	PRK00529, PRK00529, elongation factor P; Validated.	4.45771e-116
NZ_CP011883.2|WP_047314358.1|1803122_1803410_-|WXG100-family-type-VII-secretion-target	gnl|CDD|377587	pfam06013, WXG100, Proteins of 100 residues with WXG. ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. homologs have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the pfam01580 domains in the YukA-like proteins.	2.07868e-09
NZ_CP011883.2|WP_082129631.1|1790186_1791098_+|shikimate-dehydrogenase	gnl|CDD|273813	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. [Amino acid biosynthesis, Aromatic amino acid family].	5.9262e-125
NZ_CP011883.2|WP_047316553.1|1795747_1796878_+|aminopeptidase-P-family-protein	gnl|CDD|238525	cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.	1.15765e-105
NZ_CP011883.2|WP_054880188.1|1789030_1790284_+|aminodeoxychorismate-lyase	gnl|CDD|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	7.64571e-113
NZ_CP011883.2|WP_054880189.1|1785804_1788528_+|alanine--tRNA-ligase	gnl|CDD|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP011883.2|WP_054880186.1|1797458_1797965_+|transcription-antitermination-factor-NusB	gnl|CDD|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.74208e-54
NZ_CP011883.2|WP_047316555.1|1794548_1794986_+|type-II-3-dehydroquinate-dehydratase	gnl|CDD|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	1.30635e-80
NZ_CP011883.2|WP_054880184.1|1803477_1803777_-|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.69432e-11
NZ_CP011883.2|WP_047316559.1|1788528_1789038_+|Holliday-junction-resolvase-RuvX	gnl|CDD|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.92378e-54
NZ_CP011883.2|WP_156166590.1|1785273_1785663_+|YjbQ-family-protein	gnl|CDD|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	4.1433e-44
NZ_CP011883.2|WP_047316581.1|1791108_1791537_+|prepilin-peptidase	gnl|CDD|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	8.38656e-08
NZ_CP011883.2|WP_054881002.1|1783083_1784439_+|replication-associated-recombination-protein-A	gnl|CDD|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP011883.2|WP_047316550.1|1798286_1801139_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NZ_CP011883.2|WP_054881001.1|1791604_1792828_+|chorismate-synthase	gnl|CDD|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP011883.2|WP_047316556.1|1793463_1794549_+|3-dehydroquinate-synthase	gnl|CDD|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	1.52067e-174
NZ_CP011883.2|WP_054880185.1|1801308_1802559_-|FAD-binding-monooxygenase	gnl|CDD|169028	PRK07588, PRK07588, FAD-binding domain.	3.20605e-81
NZ_CP011883.2|WP_047316563.1|1781892_1782945_+|hypothetical-protein	gnl|CDD|226757	COG4307, COG4307, Uncharacterized protein conserved in bacteria [Function unknown].	3.65263e-177

Protein sequences

>NZ_CP011883.2|WP_054881001.1|1791604_1792828_+|chorismate-synthase
MLRWITAGESHGRALVAVVEGMVAGVEVTSTAIADQLARRRLGYGRGARMAFERDAVTVLSGVRHGITLGGPIAIEIGNTEWPKWESVMAADPVDPSKTQEMEDSARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTIARHFLRQALGVEVLSHVISIGASAPYDGPPPGPKDLNAIDASPVRAFDETAEKSMIAEIEAAKKDGDTLGGVVEAVVLGLPVGLGSFTSGDDRLDSQLAAAVMGIQAIKGVEIGDGFETARRRGSRAHDEMYPGPDGVVRSTNRAGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGEEAVAIHQRSDVCAVPAAAVVVETMVALVLARAALRKFGGDSLTETRRNIEAYQRAVADREAPAAQAAASRG
>NZ_CP011883.2|WP_047316581.1|1791108_1791537_+|prepilin-peptidase
MRVGAACVVLVWLAALSCYDIAERRLPNALTLPGAGVILLTAAVAGRGGPTLAGSVALTGVYLLVHLVAPAAMGAGDVKLAIGLGGLAGYFGVEVWFLAALGAPMLTALLGVAARFFGGAGAVPHGPSMCLATVGAVSLALG
>NZ_CP011883.2|WP_082129631.1|1790186_1791098_+|shikimate-dehydrogenase
MPRGRRCSPGIISSIWPISNSRSTTVSSTARANSVPRKAGVLGSPIAHSRSPHLHLAAYHALGLQDWTYERIECGADELPVVVGGFGPQWVGVSVTMPGKFAALRFADEHTARAGLVGSANTLLRTPRGWRADNTDIDGVAGALAAIGPLAGRALVCGSGGTAPAAVVGLAELGVTDITVVARNPDKAARLVDLGAQVSVATRFCGLDSDALADEVAAADVLVSTVPADVAARYAGTFATIPVLLDAIYDPWPTPLAAAVAAAGGHVISGLQMLLHQAFAQVEQFTGMPAPREAMACALAALH
>NZ_CP011883.2|WP_054880188.1|1789030_1790284_+|aminodeoxychorismate-lyase
MSDYLARHRIAPEAVGLGRHEMSSADRDGRRLAKRGHPSRRFAGKVALGLLVVVVVAAAFVGLRLWHTLFGSAEDYTGTGKHDIMIQIHAGDSTTMIGETLHNQGVVASVRAFVDASHGNAAISSIQPGFYRMRTEIPAAAAAARLADPENRVGKLVIPEGRQLDDTTDMKTGKVNPGIFSLISRATCVDLDGNRHCVSLNDLRAATSKTLPAKLSVPAWALEPVLELGNDHRRIEGLIAPGTFNVDPSASADAIMANLISASAVGYTESGLVDTARSLGLSPYDILVVASLVQQEASPQDFPKVARVIYNRLYEHRTLEFDSTVNYPLDRREVATSDADRGLRTPWNTYVSQGLPATAICSPGIDALHAAEHPEPGDWLYFVTIDAQGTTLFTRDYQQHLANIELAKHNGVLDSAR
>NZ_CP011883.2|WP_047316559.1|1788528_1789038_+|Holliday-junction-resolvase-RuvX
MDSSQQDPGRGRRLGIDVGSVRIGVASSDPDGILATPVETVRRDRSAKHLRRLAELVAELQVVEVIVGLPRTLADRTGPSAKDAIETAESLARRVAPIPVRFADERLTTVSAQRSLRAAGVRAKDQRAVIDQAAAVAILQGWLDQRRAAIPACADGPTTGSVAGEVIDV
>NZ_CP011883.2|WP_054880189.1|1785804_1788528_+|alanine--tRNA-ligase
MQTHEIRKRFLDHFVKAGHTEVPSASVILDDPNLLFVNAGMVQFVPFFLGQRTPPYATATSIQKCIRTPDIDEVGITTRHNTFFQMAGNFSFGEYFKRGAIELAWALLTNSLADGGYGLDPERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPQGGPIVNEDRYLEVWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDLVAARAPRPYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGLDSPDSPIVGDLMATVRDAMGRAYPELVSDFDRINRIAVAEETAFNRTLASGSKLFDDVAGATVASGSTVVAGSDAFTLHDTYGFPIELTLEMAAEAGLTVDETGFHELMLRQRQRAKADAAARKHAHADLTAYRELVDAGPTDFTGFDELTTEAKILGIFVDGKRVPVVAHAARGEAGIADRVELVLDRTPLYAESGGQIADVGTISGTGAGESARAAVTDVQKIARTLHVHRVNVESGEFVEGDTVVAAVDAGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDEQRTQIEEVTNEAVQADFEVHTFTEQLDKAKAMGAMALFGEAYPDEVRVVEMGGPFSLELCGGTHVPNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLAASLKVPSEEVPARVATLVERLKAAEKELERARQATAQAAATNAAAGAERIGNVRVVAQRMSGAMTPADLRSLVGDIRGKLGSDPAVVALIAVTSDGSTATVPYAVAANSGAQDLGIRANDLVTQLAIAVDGRGGGKADLAQGSGKDPTGIDAALDAVRAQIARVG
>NZ_CP011883.2|WP_156166590.1|1785273_1785663_+|YjbQ-family-protein
MLEVDTARRRIVDLTDAVRQFCVTHSAGLCNVFVPHATAGLAIIETGAGSDDDLIDTLERLLPRDDRYRHAHGSAGHGADHVLPAIVAPSVTVPVFGGAPLLGTWQSVVLVDLNRDNPRRSVRLTFVEA
>NZ_CP011883.2|WP_047316562.1|1784473_1785097_-|hypothetical-protein
MYARSTTIQAQPLSVDIGIAHIRDVVMPALQEIDGCVGVSLLVDRQSGRCIATSSWENVQAMRASAARVAPIRDRAALMFDGSARIEEWEIALLHRDHRSHEGACVRATWLKMVPDQRSRSVDFYRTSVLPELEKLDGFCSASLMVDHPASRRAVSCSTFDSMDAMARNRDRATELRSKRVRDLGAEVLDVAEFELAIAHLRVPELV
>NZ_CP011883.2|WP_054881002.1|1783083_1784439_+|replication-associated-recombination-protein-A
MSNVVSDSLFDLPGPPQPTDHAVGISAGAPLAVRMRPASLDELVGQGHLLAPGSPLRRLVEGSGVASAILYGPPGCGKTTLAALISQATGRRFEALSALSAGVKDVRAVIDRSRQGLLSGERTVLFIDEVHRFSKTQQDALLSAVENRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTADDIRAVVQRAIDDPRGLGGQVAVAPEAVDLLVRLAAGDARRVLTALEVAAEAVHAGDELTVTAIEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLVAGEDPRFIARRLLILASEDIGMADPTALPVAVAAAQTVQLIGMPEAQLTLAHATVHLATAPKSNAVTIALGAAIDDIKAGKAGLVPAHLRDGHYSGAAALGNAKGYKYSHDDPDGVVDQQYPPDELVGVDYYRPTGRGGEREIVGRLGRLRAIIRGRRG
>NZ_CP011883.2|WP_047316563.1|1781892_1782945_+|hypothetical-protein
MRDFRCPNCGQRLTFENSACLSCGSALGFSLKDMALLVIGDAEHAGAVAAGEYQLCANLHLAECNWLVPVDQPGGLCTSCALTQRRPHDADTIGLAGFARAEAAKRRLIAELNELKLPIVGRDQDPDFGLAFHLLSSEHEKVVTGHDGGVITLDLAEGDDVHREQLRVEMDEPYRTLLGHFRHEIGHYYFYRLIANSGVYLERFRELFGDPDADYSEALDRHYHDGVPADWQERFVSSYATMHAAEDWAETFAHYLHIRDALDTSAWCGLAPASATFERRVLGPSAFPTIIDMWLPLSWSLNMVNRSMGHDDLYPFVLPPAVLDKMQFIHAVVDEVASSPTISTEVRGRG
>NZ_CP011883.2|WP_047316556.1|1793463_1794549_+|3-dehydroquinate-synthase
MTNINTSVTVQVAVDPPYPVVIGTGLSDQLDELLANRHRVAILHQPVLTQTAEAIRSHLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHVPTTLLGMVDAAIGGKTGINTEAGKNLVGAFHQPLAVLADLATLETLPRNEIVSGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAVTVKADVVSADEKESELREILNYGHTLAHAIERRERYEWRHGAAVSVGLVFAAELARLTGRLDDATAERHRSILTSLGLPVSYDADALPQLLEYMAGDKKTRAGVLRFVVLDGLAKPGRLVGPDPGLLVTAYAGLSA
>NZ_CP011883.2|WP_047316555.1|1794548_1794986_+|type-II-3-dehydroquinate-dehydratase
MTTVNVINGPNLGRLGRREPDVYGSTTHDQLAVLIEREAAELGIKAVVRQSDSESQLLKWVHLAADAGEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPVATGVIVGLGVQGYLLALRYLAETAGS
>NZ_CP011883.2|WP_054880187.1|1794982_1795660_-|B-4DMT-family-transporter
MSNWMLRGVAFAALMVVVRLIQGTMINAWQAQSELISVVLLAVFIAAAVVWAARDGRADATASPDPDRRQDLAMTWLLTGILAGVLGGAVAWLISLLYNGIYTGGLINELTTFAAFTALIVFLPGVIGVAFGRWRVDRSGPPVPEHGGSEQDRADTDVFAAVRADDTPTGELAAAQPKEQTAQVATAEPEAPTETITTGEPDDAPTEVIGTDTDATTPHDIPKKD
>NZ_CP011883.2|WP_047316553.1|1795747_1796878_+|aminopeptidase-P-family-protein
MTHSQRRDNLKSQIVATGLNAMLVTDLINVRYLSGFTGSNGALLVFADERDAVLATDGRYRTQAAQQAPGLEVAIERSCGRYLAGRAADDGVHKLGFESHVVTVDGLDALTGELEGRHTELVRASGTVEALREVKDAGELALLRLACEAADAALAELVARGGVRPGRTEREVGRELEGLMLDHGADALSFETIVAAGPNSAIPHHRPTDAVLEAGDFVKIDFGALVAGYHSDMTRTFVLGPAADWQLEIYQLVAEAQRAGREALRPGANLRDVDAAARQLIVDAGYGQQFSHGLGHGVGLEIHEAPGIGATSAGTLLAGSVVTVEPGVYLSGRGGVRIEDTLVVAAKATPETSTTSRPTGLTPELLTRFPKELAIL
>NZ_CP011883.2|WP_047316552.1|1796892_1797456_+|elongation-factor-P
MATTADFKNGLVLAIEGQLWTIIEFQHVKPGKGPAFVRTKLKNVLSGKVVDKTYNAGVKVDTATVDRRDTTYLYRDGADFVFMDSQDYEQHPLPESLVGDAARFLLEGMPVQVAFHNGAPLYIELPVTVELEVTHTEPGLQGDRSSAGTKPATLETGAQINVPLFINTGDKLKVDSRDGSYLGRVNA
>NZ_CP011883.2|WP_054880186.1|1797458_1797965_+|transcription-antitermination-factor-NusB
MSKPVKGRHQARKRAVDLLFEAEARGLSPLEVVEVRSALAESKPDVAPLHPYTVVVAQGVSEHTAHIDELITSHLQGWTLDRLPAVDRAILRVSVWELLYADDVPEPVAVDEAVELAKELSTDDSPGFVNGVLGQVMLVTPQIRAAAQAVRQAVRTAAGTSENHAPQS
>NZ_CP011883.2|WP_047316550.1|1798286_1801139_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNRDSGHPRRLRVSALAAVANPSYTRIDTWNVLDDACRHLAEVDRAGLDTAHDVARVKRLLDRIGAYERYWLYPGAENLAAFRGYLATMATVRLTEEVSLAVRLLSEYGDRTALFDTSAPLADQELVAQAKQQQFYTVLLADDAPSTAPDCLAESLRELRNPSDDVQFELLVVSSVEDAITAVALNGEIQAAIIRHDLPLRSRDRVPLMNTLLGASDSESSLVTMDRPHDWVECGEWIRQLRPHIDLYLLTDESIAAGSDDEPDVYDRTFYRLNDVTDLNSTVLAGLRNRFATPFFDALRAYAAAPVGQFHALPVARGASIFNSRSLQDMGEFYGRNIFMAETSTTSGGLDSLLDPHGNIKKAMDKAAVTWRANHTYFVTNGTSTANKIVVQSLTRPGDIVLIDRNCHKSHHYGLVLAGAYPMYLDAYPLPQFAIYGAVSLRTIKKALLDLEAAGQLNRVRMLLLTNCTFDGVVYNPQRVMEEVLAIKPDICFLWDEAWYAFATAVPWARQRTAMVSAEQLEQRLWSAEYAEEYRNWCASMDGIPRSQWVDQRLLPDPDRARIRVYATHSTHKSLSALRQASMIHVRDQDFNALARDAFGEAFLTHTSTSPNQQLLASLDLARRQVDIEGFQLVRLVYDMALVFRHRVRKDRLISKWFRILDESDLVPDEYRASAVSSYRQVRQGALAEWNEAWRSDQFVLDPTRVTLFVGKTGMNGYDFREKILMERFGIQINKTSINSVLLIFTIGVTWSSVHYLLDVLRRVASDFDRIQKAASGADLALHQRHVEEITQDLPHLPDFSEFDVAFRPEDASSFGDMRSAFYAGYEESDREYVQIGTAGRQLAEGRTLVSTTFVVPYPPGFPVLVPGQVVSKEIIYFLAQLDVKEIHGYNPDLGLSVFTENALARMTARRNAAAAAVGSAFAAFEIPPDPSAMNGAVNGDRVQAIAEDA
>NZ_CP011883.2|WP_054880185.1|1801308_1802559_-|FAD-binding-monooxygenase
MSKPTVLISGAGIAGPALAFWLNRAGHRVVVLEIADGIRPGGQTVDLRGAGRAVVERMGLMDRMRERSLDQRGVAWVTADGRRRSEMPVEAFHGNGMVSKLEILRGDLADVLYQATAADVEYRFGTRIMGLATANDASENVVVTLSDGTAVRADLVVGADGPHSAVRRLAFGPEESFVKPLGGYNAWFTAPDTVGLDGWYLMYQAPGGLNVSMRPSHDPAIAKAGLAFRSDPIHYDRSDLDAQRDLLAARFAGAGWQSDALVAAAHAADDFYFDAFTQVHMNVWSAGRVTLVGDAGYCASPLSGMGTSLALVGAYVLAGELGPAGSGTGINAEPLAAALDRYQTVMRPYVDRCQKLPNGIDGYLPKSAADITMTALVMKYMQRWPFRPFAERKWFTTADAIELPDYAASSSSARRG
>NZ_CP011883.2|WP_047314358.1|1803122_1803410_-|WXG100-family-type-VII-secretion-target
MSSINYQFGDIDAHGATIRAQAASLEATHQAILASVRDAADFWGGQGSAACEQFITDLGRNFQMIYEQANAHGQKVQAAGNNMADTDRSVGSAWA
>NZ_CP011883.2|WP_054880184.1|1803477_1803777_-|WXG100-family-type-VII-secretion-target
MTARFMTDPHAMRDMARRFEMHGQTVEDESHKMWASTLNIAGAGWSGAAQATSFDTMGQMNQAFRNIVNMLHEVRDQLGAAATRYEQQEQASQQILQSS

Crispr_ID: NZ_CP011883_10

• CRISPR_ID: NZ_CP011883_10
• CRISPR_location: 1813953-1814063
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_10

Consensus_repeat	Method
CTCGTGAACCGCGCCGACGACGATGCAGAGC	CRISPRCasFinder

spacers of NZ_CP011883_10

>10.1|1813984|49|NZ_CP011883|CRISPRCasFinder
AAAACAGCGATGTGGGGGCACCTCCCGCTTGCGGGGGAGAGGAGCGGCG

CRISPR arrays and Neighbor proteins around NZ_CP011883_10

CRISPR arrays

The CRISPR arrays of NZ_CP011883_10

>merge|NZ_CP011883|10|1813953-1814063|CRISPRCasFinder
CTCGTGAACCGCGCCGACGACGATGCAGAGCAAAACAGCGATGTGGGGGCACCTCCCGCTTGCGGGGGAGAGGAGCGGCGCTCGTGAACCGCGCCGACGACGATGCAGAGC

>NZ_CP011883|10|10|1813953-1814063|CRISPRCasFinder
CTCGTGAACCGCGCCGACGACGATGCAGAGC	AAAACAGCGATGTGGGGGCACCTCCCGCTTGCGGGGGAGAGGAGCGGCG
CTCGTGAACCGCGCCGACGACGATGCAGAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_054880179.1|1806662_1807877_-|serine-hydrolase	unknown	unknown	gnl|CDD|365903
NZ_CP011883.2|WP_054880172.1|1818740_1819589_+|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl|CDD|234651
NZ_CP011883.2|WP_054880180.1|1806117_1806657_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NZ_CP011883.2|WP_054880178.1|1807887_1808547_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NZ_CP011883.2|WP_047316303.1|1819776_1820085_+|PE-family-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_082607567.1|1825309_1825777_+|hypothetical-protein	unknown	unknown	gnl|CDD|307151
NZ_CP011883.2|WP_054880173.1|1815316_1818688_+|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl|CDD|235393
NZ_CP011883.2|WP_054880182.1|1804776_1805361_-|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054880174.1|1814088_1815216_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl|CDD|237139
NZ_CP011883.2|WP_054880184.1|1803477_1803777_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_CP011883.2|WP_168162522.1|1803986_1804589_-|PPE-domain-containing-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_047316292.1|1812172_1813465_+|dihydroorotase	unknown	unknown	gnl|CDD|236479
NZ_CP011883.2|WP_054880169.1|1822010_1822253_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880166.1|1824008_1824947_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054880176.1|1810623_1811214_+|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	unknown	unknown	gnl|CDD|235365
NZ_CP011883.2|WP_054880177.1|1808734_1810399_-|PE-family-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_054880167.1|1823703_1824012_+|PE-family-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_156166558.1|1811210_1812176_+|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl|CDD|234849
NZ_CP011883.2|WP_054880168.1|1822249_1823170_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_156406740.1|1825978_1826131_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054880179.1|1806662_1807877_-|serine-hydrolase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	5.72939e-62
NZ_CP011883.2|WP_054880172.1|1818740_1819589_+|orotidine-5'-phosphate-decarboxylase	gnl|CDD|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	3.11697e-120
NZ_CP011883.2|WP_054880180.1|1806117_1806657_-|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.87826e-32
NZ_CP011883.2|WP_054880178.1|1807887_1808547_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.15202e-24
NZ_CP011883.2|WP_047316303.1|1819776_1820085_+|PE-family-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	9.71575e-15
NZ_CP011883.2|WP_082607567.1|1825309_1825777_+|hypothetical-protein	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	8.53651e-09
NZ_CP011883.2|WP_054880173.1|1815316_1818688_+|carbamoyl-phosphate-synthase-large-subunit	gnl|CDD|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP011883.2|WP_054880182.1|1804776_1805361_-|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	5.6586e-33
NZ_CP011883.2|WP_054880174.1|1814088_1815216_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl|CDD|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP011883.2|WP_054880184.1|1803477_1803777_-|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.69432e-11
NZ_CP011883.2|WP_168162522.1|1803986_1804589_-|PPE-domain-containing-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.27886e-31
NZ_CP011883.2|WP_047316292.1|1812172_1813465_+|dihydroorotase	gnl|CDD|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_CP011883.2|WP_054880166.1|1824008_1824947_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.00828e-44
NZ_CP011883.2|WP_054880176.1|1810623_1811214_+|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR	gnl|CDD|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.55373e-84
NZ_CP011883.2|WP_054880177.1|1808734_1810399_-|PE-family-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.80697e-25
NZ_CP011883.2|WP_054880167.1|1823703_1824012_+|PE-family-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.28579e-14
NZ_CP011883.2|WP_156166558.1|1811210_1812176_+|aspartate-carbamoyltransferase-catalytic-subunit	gnl|CDD|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	3.38828e-173
NZ_CP011883.2|WP_054880168.1|1822249_1823170_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	6.34755e-40

Protein sequences

>NZ_CP011883.2|WP_047316292.1|1812172_1813465_+|dihydroorotase
MSVLLRGVRLYGEGERVDVMVEDGQIANIGPGLAIPDTADVIDATGQVLLPGLVDLHTHLREPGREYAEDIETGSAAAALGGYTAVFAMPNTTPVADSPVVTDHVWHRGQQVGLVDVHPVGAVTVGLAGAELTEMGMMAAGAAQVRLFSDDGNCVHNPLVMRRALEYATGLGVLIAQHAEEPRLTVGAVAHEGPMAARLGLSGWPRAAEESIVARDALLARDAGARVHICHASTAGTVDILKWAKAQGISITAEVTPHHLLLDDSRLASYDGVNRVNPPLREAADAIALRQALADGIIDCVATDHAPHAEHEKCVEFCAARPGMLGLQTALSVVAHTMVVPGLLTWRDVARVMSENPARIAGLPDHGRPLEVGEPANLTVVDPDATWTVTGAGLASRSANTPYESMTLPVTVTATLLRGKVTARDQKSPA
>NZ_CP011883.2|WP_156166558.1|1811210_1812176_+|aspartate-carbamoyltransferase-catalytic-subunit
MMSRHLLTAGDLSRDDATAILDDADRFAQALVGREIKKLPTLRGRTVITMFYENSTRTRVSFEVAGKWMSADVINVSAAGSSASKGESLRDTALTLRAAGADALIIRHPASGAAHLLAEWTAAETDEGGPAVINAGDGTHEHPTQALLDALTIRQRLGGIEGRRIVIVGDIVHSRVARSNVVLLDTLGAEVVLVAPPTLLPVGVDGWPATISGDFDAELPAADAVLMLRVQAERMNGGFFPSVREYSCLYGLTERRQAMLPGHAVVLHPGPMLRGMEIASSVADSSQSAVLQQVSNGVHVRMAVLFHVLVGTESAEKEGAA
>NZ_CP011883.2|WP_054880176.1|1810623_1811214_+|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase-PyrR
MGAADDPAFGLGSRGSQELMSAADVGRTISRIAHQIIEKTALDGPDAPRVVLLGIPTRGVILATRLASNIGEYSGIEVGCGGLDITLYRDDLMMQPPRPLEATSIPAGGVDDALVILVDDVLYSGRSVRAALDALRDAGRPRVVQLAVLVDRGHRELPLRADYVGKNVPTSRRESVHVLLREHDGRDGVVISRDGA
>NZ_CP011883.2|WP_054880177.1|1808734_1810399_-|PE-family-protein
MSFVMVAPESLISVASDVARVGSALDAANAAALAPITALLAAGEDEVSAAIAALFSSHGQTYQIISARAAEFQTRFVQALTSGAGGYASAEAANASPLQMLEQQVLGAINAPSQALWGRLLIGDGTNGGPGQPGGPGGLLYGNGGNGGASNTAGVPGGSGGPAGLWGNGGAGGAGFNAGAGVAGTNGGAGGAGGWLVGNGGPGGAGGASGGNAAAPLSGGAGGAGGNAIGLFGNGGAGGVGGAGSTGSTGLVDHGAPGGDGGLGAPGGHAGVLYGIGGAGGAGGAGGAGGAGAYYQNGFAGGVGGNGAMGGAGGAGGGLVGVGGAGGAGGAGGLGGAGGPGNEAGGAGGAGGAAAMGGAGGAGGGLLGFGGAGGNGGGGGAGGDGGDGGLGGKGGPEFGDGGKGGAGGAAAMGGAGGAGGGLLGFGGDGGNGGAGGDGGDGGGGDVSGAGGGGGAGGDGGDAAIGGGGGIAGLVYGNGGAGGAGAAGGSAGSGGTGSPAGASGLAGAASGGGAGGSAQLVGNGGAGGAGVNGAPGGAGGAGGRLFGNAGATGPP
>NZ_CP011883.2|WP_054880178.1|1807887_1808547_-|class-I-SAM-dependent-methyltransferase
MTGTNSSQRLDFDALYRGESPGDGLPPMSTPPWDTKAPKENVIEWQSGGWVHGDVLDIGCGLGDNAIYLAKNGFRVTGLDISSTALITAEQRAKDAGVAVKFAVADSTKLDGYTNAFDTVIDSGMFHCLDDDGKRSYAVAVHRATRPGATLLISCFSDANPSDVERPLPGVTKQTLHDVLGDAGWDIASLEPTTVRREQDGTEIEMAFWYVRAQRHDGS
>NZ_CP011883.2|WP_054880179.1|1806662_1807877_-|serine-hydrolase
MNRRSLVGNQTSIREVCDAGLLAGALTMVWHRGETLQVNEIGYRDIDAGLPMQRDTLFRIASMTKPVTVAAVMSLVDDGKLALHDPITRWAPELAELRVLDQPDGPLDRTHPARRPILLEDLLTHTSGLAYGFSVPGPISRAYLRLPFGRGSDAWLTELAALPLVHQPGDRVTYSHSIDVLGVIVSRIEGKPFNQVLDERILGPAGMTDTGFFIPADMRPRAATMYRLDEKNQLRHDVMGPPHVKPPSFCNAGGGLWSTADDYLRFVRMLLGDGTVDGVRVLSAESAHLMRTDRLTDKHKRHAFLGAPFWVGRGFGLNLSVVTDPAKCAPLFGPGGLGTFSWPGAYGTWWQADPAANLILLYLVQNLPMLSSDAAAAVAGNTSQAKLRTAQPKFVRHTYRALGL
>NZ_CP011883.2|WP_054880180.1|1806117_1806657_-|GNAT-family-N-acetyltransferase
MVNYPPDRITGPRLLLRLPELDDAGPIFQRVARDPEVTRYLLWTPHPDVAATRRVIAERTNVSDNERTWAITLRNSGDVIGLTSCRRPVQHSVEVGYCLGRRWWGKGLMSEALTLLLTALNTDPDVYRVWATCSVDNTRSAQLMERAGFALEGRLVRHAVYPSMGPEPRDSLLYAKILR
>NZ_CP011883.2|WP_054880182.1|1804776_1805361_-|PPE-family-protein
MPNFNALPPEVNVSNIQGPGSKPIRTAQTAWESLAKELASAADGWGTQVSATQDSFKGPAAGYFLQAAKQYHAWLYNHAYTANCTALHLGEAAQAYDTAVRLMTPHTAIVANRATALTLKTTNFLGQFTTKIAELDRKYEKMWARNAEAMNEYQFVTFDIMKRAEETAITPAPLVVHGFYRPFGSSQTTTEEDG
>NZ_CP011883.2|WP_168162522.1|1803986_1804589_-|PPE-domain-containing-protein
MPNFNALPPEVNVSNIQGPGSMPIRTAVKAWGDLTVELYSQMKRWKDQVSATQDSFKGPAARHFIDAANQYTSWLNGHAGTASATAVYLGLAAQAYDRAVKAMVPTSTIVANRAATLTMKTTNLLGQFTTKIMELDDEYQKMWAQNAEAMNQYQFAAFEITRQVEEAGITPAPQAVHGSSSRSSGYHPISSATFDEEKFS
>NZ_CP011883.2|WP_054880184.1|1803477_1803777_-|WXG100-family-type-VII-secretion-target
MTARFMTDPHAMRDMARRFEMHGQTVEDESHKMWASTLNIAGAGWSGAAQATSFDTMGQMNQAFRNIVNMLHEVRDQLGAAATRYEQQEQASQQILQSS
>NZ_CP011883.2|WP_054880174.1|1814088_1815216_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MNRALLVLEDGRVFTGRPFGAIGQTLGEAVFSTGMSGYQETLTDPSYHRQIVVATAPQIGNTGWNDQDGESRDDKIWVAGYAVRDPSPCASNWRATGTLEDELVRQNIVGIAGIDTRAVVRHLRSHGSMKAGVFSGAAATDPLNSEALVERVRTQQSMLGSDLAGEVSTPDAYIVEPEGPHRFTVAALDLGIKTNTPRNFARRGIRSHVLPASATFDHIAEIKPHGLFLSNGPGDPATADHVVALTREVLGAGIPLFGICFGNQILGRALGLLTYKMVFGHRGINIPVIDHATGRVAVTAQNHGFALEGEAGQSFDTPFGPAVVSHTCANDGVVEGVKLADGRAFSVQYHPEAAAGPHDAEYLFDSFVELMAAQR
>NZ_CP011883.2|WP_054880173.1|1815316_1818688_+|carbamoyl-phosphate-synthase-large-subunit
MPRRTDLNHVLVIGSGPIVIGQACEFDYSGTQACRVLRTEGLQVSLVNSNPATIMTDPEYADFTYVEPITPAFIERVIAQQAECGNKIDALLATLGGQTALNTAVALYENGVLERYGVELIGADFDAIQRGEDRQRFKDIVAKVGGESARSRVCFTMDEVRETVEEVGLPVVVRPSFTMGGLGSGMAYSSEEVERMAGAGLAASPSANVLIEESIYGWKEFELELMRDSHDNVVVVCSIENVDPMGVHTGDSVTVAPAMTLTDREYQRMRDLGIAILREVGVDTGGCNIQFAVDPRNGRLIVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDEIVNDITKETPACFEPTLDYVVVKAPRFAFEKFPGADPTLTTTMKSVGEAMSLGRNFVEALGKVMRSLETSRAGFWTAPDPDGGVEQVLIRLQTPTEGRLYDVELALRLDASIEKVAQVSGIDPWFVAQIDELVRLRSELVAAPVLDAELLRRAKHNGLSDRQIAALRPELAGEDGVRSLRKRLGIHPVYKTVDTCAAEFEAKTPYHYSSYELDPAAETEVAPQAEKPKVLILGSGPNRIGQGIEFDYSCVHAATTLSQAGFETVMVNCNPETVSTDYDTADRLYFEPLTFEDVLEVFHAEEQSAEGGAGVAGVIVQLGGQTPLGLAQRLADAGVPIVGTPPEAIDLAEDRGAFGDVLSAAGLPAPKYGTATTFAQARRIAAEIGYPVLVRPSYVLGGRGMEIVYDEETLKGYITRATALSPEHPVLVDRFLEDAVEIDVDALCDGTEVYIGGVMEHIEEAGIHSGDSACALPPVTLGRSDLEKVRQATEAIARGIGVVGLLNVQYALKDDVLYVLEANPRASRTVPFVSKATAIPLAKACARIMLGASISQLRSEGMLAASGDGGNAAPHAPIAVKEAVLPFHRFRRADGAAIDSLLGPEMKSTGEVMGIDHDFGSAFAKSQTAAYGSLPTQGTVFVSVANRDKRSLVFPVKRLADLGFHVIATEGTAEMLRRNGIPCDEVRKHFEPPQVGRPALSAVDAIRAGDVDMVINTPYGNSGPRIDGYEIRSAAVSVNIPCVTTVQGASAAVQGIEAGIRGDIGVRSLQELHSAIGAGSAADKAGKEA
>NZ_CP011883.2|WP_054880172.1|1818740_1819589_+|orotidine-5'-phosphate-decarboxylase
MTGFGARLVEATSRRGQLCLGIDPHPELLRAWDLPATADGLAAFCDICVEAFSGFAIVKPQVAFFEAYGAAGFTVLERTIAALRSVGVLVLADAKRGDIGSTMAAYAAAWAGDSPLAADAVTASPYLGFGSLRPLLETAAAHDRGVFVLASTSNPEGATVQRATFDGRAVAQLIVDQAALVNGDVNRSADLSEPGYSGNVGVVVGATVFEAPDVSALGGPVLVPGVGAQGGRPEALGGLGGAAPGQLLPAVSRAVLRAGPGVSELRAAGERMRDAVAYLGAV
>NZ_CP011883.2|WP_047316303.1|1819776_1820085_+|PE-family-protein
MPLRVVPEGLEAASAAIEALTVHLAAVHAEAAPFIAAVVPPGSDPVSVQNAVGFSVHGIQHAAVAAQGVEELGRSGVGVAESGASYAIGDTLAAASYLGGGL
>NZ_CP011883.2|WP_054880169.1|1822010_1822253_+|hypothetical-protein
MTLRVVPECLVCASVAIEASAAQLAAVHAEAALGAQRAWTGSQWLIVEELGRSGVGAAESGANYTLGDALATASYLGGGQ
>NZ_CP011883.2|WP_054880168.1|1822249_1823170_+|PPE-family-protein
MTEPLWLAWPPEELSTELNGGVGIGPLLASALHHSGLSVEYRKAALQISIVLEVVAHHGWDGETAEAFVGAYMTLLQWLIRAAADSEEVAAQQELAATAYTVAVASMPTQLELAANRAMWAVLMATNFFGINTIPIAANEAEYAAMWIRAAATMAAYEATSRVVLSSMPELDPPPPILKSDASTWLANSPQVATVALGGVVANLGAATGLAGLSGLADGESSAIPDVVPALVPVAAAPVALTAAWGARTSDFGAESLGFAGTVRNEAVVEVAGLTTLAGDDFGGGPTMPMVPSTWVPDRAGLGEAT
>NZ_CP011883.2|WP_054880167.1|1823703_1824012_+|PE-family-protein
MTLRVVPEGLEAASAAIEALTVHLAAVHAEAAPFIAAVVPPGSDPVSVQNAVGFSVHGIQHAAVAAQGVEELGRSGVGVAESGASYAIGDTLAAASYLGGGL
>NZ_CP011883.2|WP_054880166.1|1824008_1824947_+|PPE-family-protein
MTSTEWMAFPPEMQSAMLNFGAGVGPMLNSASHNSQLAIQYAEAASQVEALLGEVRSGGWQGQAAEAFVAAYLPFLAWLIKAAADSMEVADQQEVVAAAYEAAVDAMPTEVELAANQVMRGVLKATNFFGVNTIPIAINEADYVRMWVQAATTMAAYEATSRVVLASTPQTSSPPLILKSDAPTRMANSPQVKTAALGGVVANLGAVTGLAGLSGLAGLSGLDAGQSSAIPDVAPALAPVAAAPVALTATWGARTSDFGAGPLGFAGTVRNEAVVEVAGLTTLAGDDFGGGPRVPMVPSIWAPDRAGLGKAR
>NZ_CP011883.2|WP_082607567.1|1825309_1825777_+|hypothetical-protein
MSSYVMLRLRFSGSYRGGGAVYVVLIRAARAGSGARCGSSNVSAAVRVASTRVAYKSGRELRTGDEGHREKVASSMRAIYSAPIVEDAELALKDFDASYGQQYPGAIDVWRNSWPEFVWFLDYPVELPKLSTPPTRLNRSTFGCVRSLRTVAISG
>NZ_CP011883.2|WP_156406740.1|1825978_1826131_-|hypothetical-protein
MKKFCATDVTAMTSYDNVVYEALASLPSWEPPPAAGDMALPVSRRLPTAR

Crispr_ID: NZ_CP011883_11

• CRISPR_ID: NZ_CP011883_11
• CRISPR_location: 1857473-1857660
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP011883_11

Consensus_repeat	Method
CCGCCGGCTCCACCGGCGCCGCCAGGTG	CRISPRCasFinder

spacers of NZ_CP011883_11

>11.1|1857501|65|NZ_CP011883|CRISPRCasFinder
CTCCGGTGCTAGTGGTGACGTTGGTGCCGTAGCCGTCGCCGCCGCGCCCACCGGGCGCGCCGTCA
>11.2|1857594|38|NZ_CP011883|CRISPRCasFinder
CACCCACAGTGCCTCCTGTTGATAGGTTGCTAGCGGCG

CRISPR arrays and Neighbor proteins around NZ_CP011883_11

CRISPR arrays

The CRISPR arrays of NZ_CP011883_11

>merge|NZ_CP011883|11|1857473-1857660|CRISPRCasFinder
CCGCCGGAGCCGCCAGCCCCGCCCGCTCCTCCGGTGCTAGTGGTGACGTTGGTGCCGTAGCCGTCGCCGCCGCGCCCACCGGGCGCGCCGTCACCGCCGGCACCCCCCGCGCCCCCGGCACCACCCACAGTGCCTCCTGTTGATAGGTTGCTAGCGGCGCCGCCATGGCCGCCGTCCCCGCCGGGCGC

>NZ_CP011883|11|11|1857473-1857660|CRISPRCasFinder
CCGCCGGAGCCGCCAGCCCCGCCCGCTC	CTCCGGTGCTAGTGGTGACGTTGGTGCCGTAGCCGTCGCCGCCGCGCCCACCGGGCGCGCCGTCA
CCGCCGGCACCCCCCGCGCCCCCGGCAC	CACCCACAGTGCCTCCTGTTGATAGGTTGCTAGCGGCG
CCGCCATGGCCGCCGTCCCCGCCGGGCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_054880154.1|1851209_1853147_+|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl|CDD|234792
NZ_CP011883.2|WP_047316256.1|1864921_1866172_+|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP011883.2|WP_054880145.1|1866168_1866954_+|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_CP011883.2|WP_054880153.1|1854076_1855165_+|YvcK-family-protein	unknown	unknown	gnl|CDD|211689
NZ_CP011883.2|WP_047316269.1|1846180_1846804_+|riboflavin-synthase	unknown	unknown	gnl|CDD|236455
NZ_CP011883.2|WP_047316268.1|1846968_1848246_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl|CDD|181774
NZ_CP011883.2|WP_054880147.1|1859289_1861056_+|DUF3556-domain-containing-protein	unknown	unknown	gnl|CDD|371888
NZ_CP011883.2|WP_047316297.1|1855161_1856139_+|DNA-binding-protein-WhiA	unknown	unknown	gnl|CDD|273194
NZ_CP011883.2|WP_156166559.1|1853222_1854080_+|RNase-adapter-RapZ	unknown	unknown	gnl|CDD|224574
NZ_CP011883.2|WP_082607569.1|1861308_1861890_+|hypothetical-protein	unknown	unknown	gnl|CDD|223021
NZ_CP011883.2|WP_054880996.1|1862812_1863628_-|L,D-transpeptidase	unknown	unknown	gnl|CDD|224294
NZ_CP011883.2|WP_054880156.1|1850070_1850547_+|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl|CDD|366226
NZ_CP011883.2|WP_156406882.1|1850655_1851138_+|hypothetical-protein	unknown	unknown	gnl|CDD|366226
NZ_CP011883.2|WP_054880142.1|1872271_1873015_-|6-phosphogluconolactonase	unknown	unknown	gnl|CDD|273494
NZ_CP011883.2|WP_054880157.1|1848819_1849287_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|371225
NZ_CP011883.2|WP_054880158.1|1848340_1848823_+|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl|CDD|234606
NZ_CP011883.2|WP_047316257.1|1863899_1864919_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP011883.2|WP_047313827.1|1868931_1869165_+|preprotein-translocase-subunit-SecG	unknown	unknown	gnl|CDD|235881
NZ_CP011883.2|WP_054880144.1|1867240_1868602_+|HNH-endonuclease	unknown	unknown	gnl|CDD|367155
NZ_CP011883.2|WP_054880143.1|1869194_1871999_+|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl|CDD|234570

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054880154.1|1851209_1853147_+|excinuclease-ABC-subunit-UvrC	gnl|CDD|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP011883.2|WP_047316256.1|1864921_1866172_+|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP011883.2|WP_054880145.1|1866168_1866954_+|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.15995e-140
NZ_CP011883.2|WP_054880153.1|1854076_1855165_+|YvcK-family-protein	gnl|CDD|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.10544e-130
NZ_CP011883.2|WP_047316269.1|1846180_1846804_+|riboflavin-synthase	gnl|CDD|236455	PRK09289, PRK09289, riboflavin synthase.	1.29014e-106
NZ_CP011883.2|WP_047316268.1|1846968_1848246_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl|CDD|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP011883.2|WP_054880147.1|1859289_1861056_+|DUF3556-domain-containing-protein	gnl|CDD|371888	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556). This family of transmembrane proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.	0
NZ_CP011883.2|WP_047316297.1|1855161_1856139_+|DNA-binding-protein-WhiA	gnl|CDD|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	1.33278e-134
NZ_CP011883.2|WP_156166559.1|1853222_1854080_+|RNase-adapter-RapZ	gnl|CDD|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	7.51033e-167
NZ_CP011883.2|WP_082607569.1|1861308_1861890_+|hypothetical-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	7.64391e-06
NZ_CP011883.2|WP_054880996.1|1862812_1863628_-|L,D-transpeptidase	gnl|CDD|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	7.36443e-29
NZ_CP011883.2|WP_054880156.1|1850070_1850547_+|ricin-type-beta-trefoil-lectin-domain-protein	gnl|CDD|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.05154e-16
NZ_CP011883.2|WP_156406882.1|1850655_1851138_+|hypothetical-protein	gnl|CDD|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.87028e-14
NZ_CP011883.2|WP_054880142.1|1872271_1873015_-|6-phosphogluconolactonase	gnl|CDD|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	6.24243e-97
NZ_CP011883.2|WP_054880157.1|1848819_1849287_+|PH-domain-containing-protein	gnl|CDD|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	2.88042e-18
NZ_CP011883.2|WP_054880158.1|1848340_1848823_+|6,7-dimethyl-8-ribityllumazine-synthase	gnl|CDD|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	5.74394e-63
NZ_CP011883.2|WP_047316257.1|1863899_1864919_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP011883.2|WP_047313827.1|1868931_1869165_+|preprotein-translocase-subunit-SecG	gnl|CDD|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	6.50328e-12
NZ_CP011883.2|WP_054880144.1|1867240_1868602_+|HNH-endonuclease	gnl|CDD|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.46226e-62
NZ_CP011883.2|WP_054880143.1|1869194_1871999_+|phosphoenolpyruvate-carboxylase	gnl|CDD|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0

Protein sequences

>NZ_CP011883.2|WP_047316297.1|1855161_1856139_+|DNA-binding-protein-WhiA
MTTEVKDELSRLVVKSVSARRAEVTSLLRFAGGLHIVGGRVVVEAEVDLGNIARRLRKDIFDLYGYNAVVHVLSASGIRKNTRYVLRVANDGEALARQTGLLDMRGRPVRGLPAQVVGGSLADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALALVGAARRLGVSAKAREVRGVDRVVVRDGEAIGVLLTRMGAQDTRLVWEERRMRREVRATANRLANFDDANLRRSARAAVAAAARVERALEILGDTVPDHLASAGKLRVEHRQASLEELGRLADPPMTKDAVAGRIRRLLSMADRKAKVEGIPDTESAVTPDLLEDA
>NZ_CP011883.2|WP_054880153.1|1854076_1855165_+|YvcK-family-protein
MSSPGCSPSNQSIVALGGGHGLYATLSAARRLTPYVTAIVTVADDGGSSGRLRSELGVVPPGDLRMALAALASDSPYGRLWATILQHRFGGSGALAGHPIGNLMLAGLSEVLADPVAALDEVGRILGVKGRVLPMCPIALQIEADVSGLEADPRIFGLIRGQVAIASTPGKVRRVRLLPVDPPATRQAVDAIMAADLVVLGPGSWFTSVIPHVLVPGLVAALRATTARRALVLNLVAEPGETAGFSVERHLHVLAQHAPGFTVHDIIIDAGRVPSDREREQLRRAATLLQAEVHFADVARPGTPLHDPGKLAAALDGVRVGNRDSSAPTVTATDQIRLDGERPQTGVNGPVGKGPRGDDAWR
>NZ_CP011883.2|WP_156166559.1|1853222_1854080_+|RNase-adapter-RapZ
MDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVRSRGFTGDLDSVRSELATRNITPRVVFMEASDDMLVRRYEQNRRSHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVRGLRESIERAFGGDAGATTSVTVESFGFKYGLPMDADIVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLGQPGAAEFLQTYHRLLSLVVDGYRREGKRYMTVAIGCTGGKHRSVAIAEALMGLLRSDLQLSVRVLHRDLGRE
>NZ_CP011883.2|WP_054880154.1|1851209_1853147_+|excinuclease-ABC-subunit-UvrC
MPDPATYRPAAGSIPVEPGVYRFRDLHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQLVTTAAKVEWTVVNTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLSEEFPRLMVYRGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPVRTCSAGVFKRHKQIDRPCLLGYIDKCSAPCVGRVSAEQHRHIVADFCDFLSGKTDRYARDLEQQMNAAAEQLDFERAARLRDDLSALKRALEKQAVVFGDGTDADVVAFADDQLEAAVQVFHVRGGRVRGQRGWIVEKLGDPGESGEELLVEQFLTQFYGEQAELDGAADESANPVPREVLVPCLPSNADELASWLSGLRGSRVALRVPRRGDKRALAETVQRNAKEALQQHKLKRAGDFNARSAALQNIQDALGLADAPLRIECVDISHVQGTDVVGSLVVFEDGLPRKSDYRHFGIREAAGHGRSDDVASIAEVTRRRFMRHLSDQSDPNMLSPEGKSRRFAYPPNLYVVDGGAPQVNAASAVLDELGVTDVAVIGLAKRLEEVWVPSEPDPVIMPRNSEGLFLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVPGLGEHRRKALVTHFGSIARLKEATVDQITAVPGIGVATATAVLEALRPDSPGA
>NZ_CP011883.2|WP_156406882.1|1850655_1851138_+|hypothetical-protein
MHGSRLRGGVRRVVVVVAAVFAVAALNAGVASADGPVQLKSRLGEVCLDGPSGNFNAPAVINPCDGSKTQRWNFNSPGQIESVAFPGNCLAVDVLSEWPVTLVPCNGGLGQRWSDQPNGQISTVLAGCLNAGFGAPNPGTEVNHLNCGLDGPGQEWDRIP
>NZ_CP011883.2|WP_054880156.1|1850070_1850547_+|ricin-type-beta-trefoil-lectin-domain-protein
MRESRLRGGVRRALVIVGVALAVAVLNTGVASADGAVQLKSRLGDVCLDAPTGSWVSPVVINPCNGTDFQRWSLTADQQLESVAFPGECLMQPGESWWAHLQPCINWFSQHWTIQPDGQVKGELDGCLAVLGGPGPGTWVSTRWCDPDAPDQQWYSVP
>NZ_CP011883.2|WP_054880157.1|1848819_1849287_+|PH-domain-containing-protein
MTARVDRDWDVELRPYWTPLFAYAAAFLIAAAHITVGLLLRIKSSGVVFQTADQVAIGALGLVIASAVLLFARPRLRGGAAGLSVRNLLGYRLIPWSDVVDVSFPSSGRWARIDLPDDEYIPLMAIQAVDKDRAVDAMDAVRALLARYRPDSPEH
>NZ_CP011883.2|WP_054880158.1|1848340_1848823_+|6,7-dimethyl-8-ribityllumazine-synthase
MSGGAGVPEVPTIDASGLRLGIVASTWHGRICDALLAGARKVAANSGVDNPTVVRVLGAIEIPVVAQELARTHDAVVALGVVIRGATPHFDHVCNSVTQGLTRVALDTSTPVGNGVLTTNTEEQALDRAGLPTSAEDKGAQAAAAALTTALTLLNLRART
>NZ_CP011883.2|WP_047316268.1|1846968_1848246_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MTRLDSVERAVTDIAAGKAVVVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMFAVNQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPASVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARLAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYASIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANADNIRYLMTKRDKMGHDLAGLDDFHESAHLPGEFGGAL
>NZ_CP011883.2|WP_047316269.1|1846180_1846804_+|riboflavin-synthase
MFTGIVEELGEVTGRDAHADAARLVIRGRTVTADAGHGDSIAVNGVCLTVVEVLPDGQFSADVMAETLHRSNLGELRVGSRVNLERAAAINSRLGGHIVQGHVDGTGEVVARTPSEHWEVVRIEVPPPVARYIVEKGSITVDGISLTVSGLGAEPRDWFEVSLIPTTRELTTLGRTPVGTQVNLEVDVIAKYVERLLQNAPTGDLTR
>NZ_CP011883.2|WP_054880147.1|1859289_1861056_+|DUF3556-domain-containing-protein
MGFITPELPDVDRDTWQTEPRALRLQVVTRHWVEHGFGTPYAVYLLYLLKIAVYIAAPAVIISHTPGLGGLGHIGDWWMQPIVYQKVIVFTLLFEVLGLGCGSGPLTGRFMPPIGGFLYWLRPKTIRLPAWPGKVPLTSGDTRTSADVVLYVIVLLGGTWALLSPGSPGQGGPRLTAAGDVGLINPVLVAPTIVALVLLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKLIMLALWWGAATSKVNHHFPYVVAVMTSNNALLRSQLFNPIKHMLYIDPVNDLRPSRLPKLMAHVGGTTAEFLVPGILVLVAGGEPWRWFLIGFMVVFHLNILSNLPMGVPLEWNVFFIFSLFYLFGHYGSIRATDLRSPLLLALVIAAVAVVIAGNLFPEKISFLPAMRYYAGNWATSLWCFRAGAEERLEENIVKSSALVANQLAKLYGAATAEVMSDKVAAFRAMHTHGRALNGLLSRAIDNEADYRVREGEIVAGPLVGWNFGEGHLHNEQLLAAVQRRCSFDEGDVRVIVLEGQPIHIQKQWYRILDAKIGVIEAGYVEVADMLTRQPWPEPGDEFPVHVTTQHSASGR
>NZ_CP011883.2|WP_082607569.1|1861308_1861890_+|hypothetical-protein
MKIFDRFNTAILVSAGLCGAALAFSPGAAAAPLPMPTGGPTCIEQMSGLGAAPAAVPAVLPGPVAGAVPPVPLVPGGFPPVVPPGGFPPVVPPGGFPPVVPPGGFPPVVPAGAPAMGPLLAEDPAALGSGILAGKGRPTAPPQAALSGFVVLPGPPASVEAPPAAAPVAAPAPADAAAAEPLPCCGEAAPPVR
>NZ_CP011883.2|WP_054880996.1|1862812_1863628_-|L,D-transpeptidase
MGTMRAIVRCVLVVIGIAAAVVAGPVGASLAAVNQSSGLAITSVLPTRGAVVGVAHPVVVTFGAPVTNRKAAERAIEVHSAPAMTGKFDWLDSTVVQWVPDRYWPAHSTIALSVGGLSTNFKTGPAVVGVADISDHTFTVTIDGVEAETPPPLPTPHHRPHWGEEGVMPASMGKAEFPTPAGNYTVMSKNRSVIMDSSSVGIPVDDPEGYRLSVDYAVRISSRGLYVHSAPWAVQSMGFDNTSHGCISLSPADAEWYYDTVNIGDPVIVKE
>NZ_CP011883.2|WP_047316257.1|1863899_1864919_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRVGINGFGRIGRNFYRALLAQQEQGIADVQVVAVNDITDNSTLAHLLKFDSILGRLPHDVSLEGEDTIVVGPAKIKALAVREGPTALPWRDLGVDVVVESTGLFTNAAKAKGHLEAGAKKVIISAPATDPDITIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLHDEFGIVKGLMTTVHAYTQDQNLQDGPHSDLRRARAAALNIVPTSTGAAKAIGLVMPELKGKLDGYALRVPIPTGSVTDLTADLSKSASADEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDNQAKVVSWYDNEWGYSNRLVDLIALVGKSL
>NZ_CP011883.2|WP_047316256.1|1864921_1866172_+|phosphoglycerate-kinase
MNIPNLKDLLAEGVSGRGVLVRCDLNVPLDDDGAITDLGRVTASVPTLKALLEAGAKVVVAAHLGRPKGGPDPKLSLAPVAAALGEQLGQHVQLAGDVVGSDALARAEGLTDGDILLLDNIRFDARETSKDDAQRLALAKKLAELVWPGGAFVSDGFGVVHRRQASVYDVATLLPHYAGTLVADEIRVLEQLTSSTKRPYAVVLGGSKVSDKLGVIESLATKADSIVIGGGMCFTFLAAQGFPVGRSLLETEMIETCRRLLDTYADVLRLPMDIVVTEKFAADSPPQTVAADAIPDGLMGLDIGPGSVKRFAALLSNASTIFWNGPMGVFEFPAYAAGTRGVAEAIVAATGKGAFSVVGGGDSAAAMRVLGLPEGSVSHISTGGGASLEYLEGKTLPGIEVLGEPQPGQSKGGGDS
>NZ_CP011883.2|WP_054880145.1|1866168_1866954_+|triose-phosphate-isomerase
MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLTYGAQDLSQHDPGAYTGDISGAFLAKLGCSFVVVGHSERRTYHDEDDALVAAKTAAALKNSLTPIVCIGEHLEIREAGEHVSHCQNQLRGSLAGLSPKQIGNVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASSGIAETVRVLYGGSVNAKNIGDIVAQQDVDGGLVGGASLDGEQFATLAAIAAGGPLS
>NZ_CP011883.2|WP_054880144.1|1867240_1868602_+|HNH-endonuclease
MFDQQVVARFDELFERRYPSMTSESAVLVDRICSWSRAENRAAAAQLVAIGDLFGYRLARCAETEAWAIDTMAAVAAEVAAALRVSQGLAASRLRYARAMRERLPKVAAVDGLLAVKVVRWPSMTRGRLAGQVDKIVAKADADAVRRRTQRRVDREIWIGECADGVSEIHGSLLTPDAQALDTRLTALAATVCEHDPRSREQRRADAVGALAAGADRLGCRCGRRDCVAGKRRAATSVVIHVIAEQATIDGGGLAPASQVGADGLIAPEVVAELAKSARLVALVHPADAAPEPGYVPSAALADFVRCRDLTCRWPGCDRPAIDCDLDHTIPYAAGGPTHASNLKCYCRTHHLVKTFWGWREQQLPDGTLILTSPSGCTYVTTPGSALLFPSLCRSTGGMPAPEADPLPQYCGDRTAMMPKRRRTRAQDRAHRIATERRQNHHARTTPPAGPAP
>NZ_CP011883.2|WP_047313827.1|1868931_1869165_+|preprotein-translocase-subunit-SecG
MELALQITLVVTSILVVLLVLLHRAKGGGLSTLFGGGVQSSLSGSTVVEKNLDRLTLFITGIWLVSIIGVALLIKYR
>NZ_CP011883.2|WP_054880143.1|1869194_1871999_+|phosphoenolpyruvate-carboxylase
MVEVSDAVLEPIGAVQRTRLGREATEPMRADIRLLGSILGDTVREQNGDEVFDLVERARVESFRVRRSEIDRAELARMFSALDIHLAIPIIRAFSHFALLANVAEDIHRERRRHIHADAGEPPQDSSLAATYAKLDLAELDSATVADALMGAVVSPVITAHPTETRRRTVFVTQHRITELMRLHAEGHTETDDGRSIERELRRQVLTLWQTALIRLSRLQITDEIDVGLRYYPAALFQVIPQVNSEVRNALRARWPDAELLSDPLLQPGSWIGGDRDGNPNVTADVVRRATGSAAYTAVAHYLAELTHLEQELSMSARLITVTPELAALAAGCQDAARADEPYRRALRVIRGRLSATAADILDRQPPDQLDLGLPPYSVPAELRADLDTIEASLRTHGAALLADDRLALLREGVGVFGFHLCGLDLRQNSDVHEQVVAELLAWAGVHPDYRSLPEDQRVELLAGELGIRRPLVGDRAQLSELARGELAILAAAAHAVKIYGQAAVSNYIISMCQSVSDVLEAAILLKEAGLWDASGPQPYCPVGISPLFETIDDLHNGAVILHAMLELPLYRALVAARGDWQEVMLGYSDSNKDGGYLTANWAVYRAELALVDVARKTGIRLRLFHGRGGTVGRGGGPSYQAILAQPPGAVNGSLRLTEQGEVIAAKYAEPQMARRNLESLVAATLESTLLDVEGLGDAAEPAYAVLDEVATLARRAYTELVSTPGFVDYFQASTPVSEIGSLNIGSRPTSRKPTASIADLRAIPWVLAWSQSRVMLPGWYGTGSAFQQWIAAGPESESQRAEILHDLYQRWPFFRSVLSNMAQVLAKSDLGLAARYAELVADEALRRRVFDKIVDEHQRTIAMHKLITGQDDLLADNPALARSVFNRFPYLEPLNHLQVELLRRYRSGDDDELVQRGILLTMNGLASALRNSG
>NZ_CP011883.2|WP_054880142.1|1872271_1873015_-|6-phosphogluconolactonase
MSASVEIFPDSETMIGAAGKRLADTIRSAVAARERALIVLTGGGSGIGLLRDLAIRGRQIDWSRVHLFWGDERYVPEDDDERNEKQARVALLDHIAIPPSQVHPMPAGGGEFGDDLEAAALAYEQLLAANAAPGDPTPNFDVHLLGMGPEGHINSLFPDTTAVRETSRMVVGVGDSPKPPPERITLTLPAIQRSREVWLLVSGAAKADAVAAAIGGAPPASIPAAGAVGLETTLWLLDEQAAAKLPG

Crispr_ID: NZ_CP011883_12

• CRISPR_ID: NZ_CP011883_12
• CRISPR_location: 1857944-1858127
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP011883_12

Consensus_repeat	Method
CCGCCGGCTCCACCGGCGCCGCCAGGTG	CRISPRCasFinder

spacers of NZ_CP011883_12

>12.1|1857972|56|NZ_CP011883|CRISPRCasFinder
CGCCGGCGAGGCCGACTCCACCGGTCCCGCCGTTGCCGCCATTGCCGTAGAACCAT
>12.2|1858056|44|NZ_CP011883|CRISPRCasFinder
AGCCGGTCCCGCCGGTGCCACCCACCCCGCCGTTGCCAATCAGC

CRISPR arrays and Neighbor proteins around NZ_CP011883_12

CRISPR arrays

The CRISPR arrays of NZ_CP011883_12

>merge|NZ_CP011883|12|1857944-1858127|CRISPRCasFinder
CCGCCGGCTCCACCGGCGCCGCCAGGTGCGCCGGCGAGGCCGACTCCACCGGTCCCGCCGTTGCCGCCATTGCCGTAGAACCATCCGCCGGCTCCACCGGCGCCGCCGGTGGAGCCGGTCCCGCCGGTGCCACCCACCCCGCCGTTGCCAATCAGCCCGGCATTTCCGCCGGCGCCGCCGGTCT

>NZ_CP011883|12|12|1857944-1858127|CRISPRCasFinder
CCGCCGGCTCCACCGGCGCCGCCAGGTG	CGCCGGCGAGGCCGACTCCACCGGTCCCGCCGTTGCCGCCATTGCCGTAGAACCAT
CCGCCGGCTCCACCGGCGCCGCCGGTGG	AGCCGGTCCCGCCGGTGCCACCCACCCCGCCGTTGCCAATCAGC
CCGGCATTTCCGCCGGCGCCGCCGGTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_054880154.1|1851209_1853147_+|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl|CDD|234792
NZ_CP011883.2|WP_047316256.1|1864921_1866172_+|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP011883.2|WP_054880145.1|1866168_1866954_+|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_CP011883.2|WP_054880153.1|1854076_1855165_+|YvcK-family-protein	unknown	unknown	gnl|CDD|211689
NZ_CP011883.2|WP_047316269.1|1846180_1846804_+|riboflavin-synthase	unknown	unknown	gnl|CDD|236455
NZ_CP011883.2|WP_047316268.1|1846968_1848246_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl|CDD|181774
NZ_CP011883.2|WP_054880147.1|1859289_1861056_+|DUF3556-domain-containing-protein	unknown	unknown	gnl|CDD|371888
NZ_CP011883.2|WP_047316297.1|1855161_1856139_+|DNA-binding-protein-WhiA	unknown	unknown	gnl|CDD|273194
NZ_CP011883.2|WP_156166559.1|1853222_1854080_+|RNase-adapter-RapZ	unknown	unknown	gnl|CDD|224574
NZ_CP011883.2|WP_082607569.1|1861308_1861890_+|hypothetical-protein	unknown	unknown	gnl|CDD|223021
NZ_CP011883.2|WP_054880996.1|1862812_1863628_-|L,D-transpeptidase	unknown	unknown	gnl|CDD|224294
NZ_CP011883.2|WP_054880156.1|1850070_1850547_+|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl|CDD|366226
NZ_CP011883.2|WP_156406882.1|1850655_1851138_+|hypothetical-protein	unknown	unknown	gnl|CDD|366226
NZ_CP011883.2|WP_054880142.1|1872271_1873015_-|6-phosphogluconolactonase	unknown	unknown	gnl|CDD|273494
NZ_CP011883.2|WP_054880157.1|1848819_1849287_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|371225
NZ_CP011883.2|WP_054880158.1|1848340_1848823_+|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl|CDD|234606
NZ_CP011883.2|WP_047316257.1|1863899_1864919_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP011883.2|WP_047313827.1|1868931_1869165_+|preprotein-translocase-subunit-SecG	unknown	unknown	gnl|CDD|235881
NZ_CP011883.2|WP_054880144.1|1867240_1868602_+|HNH-endonuclease	unknown	unknown	gnl|CDD|367155
NZ_CP011883.2|WP_054880143.1|1869194_1871999_+|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl|CDD|234570

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054880154.1|1851209_1853147_+|excinuclease-ABC-subunit-UvrC	gnl|CDD|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP011883.2|WP_047316256.1|1864921_1866172_+|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP011883.2|WP_054880145.1|1866168_1866954_+|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.15995e-140
NZ_CP011883.2|WP_054880153.1|1854076_1855165_+|YvcK-family-protein	gnl|CDD|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.10544e-130
NZ_CP011883.2|WP_047316269.1|1846180_1846804_+|riboflavin-synthase	gnl|CDD|236455	PRK09289, PRK09289, riboflavin synthase.	1.29014e-106
NZ_CP011883.2|WP_047316268.1|1846968_1848246_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl|CDD|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP011883.2|WP_054880147.1|1859289_1861056_+|DUF3556-domain-containing-protein	gnl|CDD|371888	pfam12077, DUF3556, Transmembrane protein of unknown function (DUF3556). This family of transmembrane proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.	0
NZ_CP011883.2|WP_047316297.1|1855161_1856139_+|DNA-binding-protein-WhiA	gnl|CDD|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	1.33278e-134
NZ_CP011883.2|WP_156166559.1|1853222_1854080_+|RNase-adapter-RapZ	gnl|CDD|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	7.51033e-167
NZ_CP011883.2|WP_082607569.1|1861308_1861890_+|hypothetical-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	7.64391e-06
NZ_CP011883.2|WP_054880996.1|1862812_1863628_-|L,D-transpeptidase	gnl|CDD|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	7.36443e-29
NZ_CP011883.2|WP_054880156.1|1850070_1850547_+|ricin-type-beta-trefoil-lectin-domain-protein	gnl|CDD|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.05154e-16
NZ_CP011883.2|WP_156406882.1|1850655_1851138_+|hypothetical-protein	gnl|CDD|366226	pfam00652, Ricin_B_lectin, Ricin-type beta-trefoil lectin domain.	1.87028e-14
NZ_CP011883.2|WP_054880142.1|1872271_1873015_-|6-phosphogluconolactonase	gnl|CDD|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	6.24243e-97
NZ_CP011883.2|WP_054880157.1|1848819_1849287_+|PH-domain-containing-protein	gnl|CDD|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	2.88042e-18
NZ_CP011883.2|WP_054880158.1|1848340_1848823_+|6,7-dimethyl-8-ribityllumazine-synthase	gnl|CDD|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	5.74394e-63
NZ_CP011883.2|WP_047316257.1|1863899_1864919_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP011883.2|WP_047313827.1|1868931_1869165_+|preprotein-translocase-subunit-SecG	gnl|CDD|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	6.50328e-12
NZ_CP011883.2|WP_054880144.1|1867240_1868602_+|HNH-endonuclease	gnl|CDD|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.46226e-62
NZ_CP011883.2|WP_054880143.1|1869194_1871999_+|phosphoenolpyruvate-carboxylase	gnl|CDD|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0

Protein sequences

>NZ_CP011883.2|WP_047316297.1|1855161_1856139_+|DNA-binding-protein-WhiA
MTTEVKDELSRLVVKSVSARRAEVTSLLRFAGGLHIVGGRVVVEAEVDLGNIARRLRKDIFDLYGYNAVVHVLSASGIRKNTRYVLRVANDGEALARQTGLLDMRGRPVRGLPAQVVGGSLADAEAAWRGAFLAHGSLTEPGRSSALEVSCPGPEAALALVGAARRLGVSAKAREVRGVDRVVVRDGEAIGVLLTRMGAQDTRLVWEERRMRREVRATANRLANFDDANLRRSARAAVAAAARVERALEILGDTVPDHLASAGKLRVEHRQASLEELGRLADPPMTKDAVAGRIRRLLSMADRKAKVEGIPDTESAVTPDLLEDA
>NZ_CP011883.2|WP_054880153.1|1854076_1855165_+|YvcK-family-protein
MSSPGCSPSNQSIVALGGGHGLYATLSAARRLTPYVTAIVTVADDGGSSGRLRSELGVVPPGDLRMALAALASDSPYGRLWATILQHRFGGSGALAGHPIGNLMLAGLSEVLADPVAALDEVGRILGVKGRVLPMCPIALQIEADVSGLEADPRIFGLIRGQVAIASTPGKVRRVRLLPVDPPATRQAVDAIMAADLVVLGPGSWFTSVIPHVLVPGLVAALRATTARRALVLNLVAEPGETAGFSVERHLHVLAQHAPGFTVHDIIIDAGRVPSDREREQLRRAATLLQAEVHFADVARPGTPLHDPGKLAAALDGVRVGNRDSSAPTVTATDQIRLDGERPQTGVNGPVGKGPRGDDAWR
>NZ_CP011883.2|WP_156166559.1|1853222_1854080_+|RNase-adapter-RapZ
MDVVLVTGLSGAGRGTAAKVLEDLGWYVADNLPPQLITRMVDFGLAAGSRITQLAVVMDVRSRGFTGDLDSVRSELATRNITPRVVFMEASDDMLVRRYEQNRRSHPLQGEQTLAEGIAAERRMLAPVRATADLIIDTSTLSVRGLRESIERAFGGDAGATTSVTVESFGFKYGLPMDADIVMDVRFLPNPHWVDELRPLTGQHPAVRDYVLGQPGAAEFLQTYHRLLSLVVDGYRREGKRYMTVAIGCTGGKHRSVAIAEALMGLLRSDLQLSVRVLHRDLGRE
>NZ_CP011883.2|WP_054880154.1|1851209_1853147_+|excinuclease-ABC-subunit-UvrC
MPDPATYRPAAGSIPVEPGVYRFRDLHGRVIYVGKAKSLRSRLTSYFADVANLHPRTRQLVTTAAKVEWTVVNTEVEALQLEYNWIKEFDPRFNVRYRDDKSYPVLAVTLSEEFPRLMVYRGPRRKGVRYFGPYSHAWAIRETLDLLTRVFPVRTCSAGVFKRHKQIDRPCLLGYIDKCSAPCVGRVSAEQHRHIVADFCDFLSGKTDRYARDLEQQMNAAAEQLDFERAARLRDDLSALKRALEKQAVVFGDGTDADVVAFADDQLEAAVQVFHVRGGRVRGQRGWIVEKLGDPGESGEELLVEQFLTQFYGEQAELDGAADESANPVPREVLVPCLPSNADELASWLSGLRGSRVALRVPRRGDKRALAETVQRNAKEALQQHKLKRAGDFNARSAALQNIQDALGLADAPLRIECVDISHVQGTDVVGSLVVFEDGLPRKSDYRHFGIREAAGHGRSDDVASIAEVTRRRFMRHLSDQSDPNMLSPEGKSRRFAYPPNLYVVDGGAPQVNAASAVLDELGVTDVAVIGLAKRLEEVWVPSEPDPVIMPRNSEGLFLLQRVRDEAHRFAITYHRSKRSKRMTASALDSVPGLGEHRRKALVTHFGSIARLKEATVDQITAVPGIGVATATAVLEALRPDSPGA
>NZ_CP011883.2|WP_156406882.1|1850655_1851138_+|hypothetical-protein
MHGSRLRGGVRRVVVVVAAVFAVAALNAGVASADGPVQLKSRLGEVCLDGPSGNFNAPAVINPCDGSKTQRWNFNSPGQIESVAFPGNCLAVDVLSEWPVTLVPCNGGLGQRWSDQPNGQISTVLAGCLNAGFGAPNPGTEVNHLNCGLDGPGQEWDRIP
>NZ_CP011883.2|WP_054880156.1|1850070_1850547_+|ricin-type-beta-trefoil-lectin-domain-protein
MRESRLRGGVRRALVIVGVALAVAVLNTGVASADGAVQLKSRLGDVCLDAPTGSWVSPVVINPCNGTDFQRWSLTADQQLESVAFPGECLMQPGESWWAHLQPCINWFSQHWTIQPDGQVKGELDGCLAVLGGPGPGTWVSTRWCDPDAPDQQWYSVP
>NZ_CP011883.2|WP_054880157.1|1848819_1849287_+|PH-domain-containing-protein
MTARVDRDWDVELRPYWTPLFAYAAAFLIAAAHITVGLLLRIKSSGVVFQTADQVAIGALGLVIASAVLLFARPRLRGGAAGLSVRNLLGYRLIPWSDVVDVSFPSSGRWARIDLPDDEYIPLMAIQAVDKDRAVDAMDAVRALLARYRPDSPEH
>NZ_CP011883.2|WP_054880158.1|1848340_1848823_+|6,7-dimethyl-8-ribityllumazine-synthase
MSGGAGVPEVPTIDASGLRLGIVASTWHGRICDALLAGARKVAANSGVDNPTVVRVLGAIEIPVVAQELARTHDAVVALGVVIRGATPHFDHVCNSVTQGLTRVALDTSTPVGNGVLTTNTEEQALDRAGLPTSAEDKGAQAAAAALTTALTLLNLRART
>NZ_CP011883.2|WP_047316268.1|1846968_1848246_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MTRLDSVERAVTDIAAGKAVVVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMFAVNQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPASVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARLAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYASIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANADNIRYLMTKRDKMGHDLAGLDDFHESAHLPGEFGGAL
>NZ_CP011883.2|WP_047316269.1|1846180_1846804_+|riboflavin-synthase
MFTGIVEELGEVTGRDAHADAARLVIRGRTVTADAGHGDSIAVNGVCLTVVEVLPDGQFSADVMAETLHRSNLGELRVGSRVNLERAAAINSRLGGHIVQGHVDGTGEVVARTPSEHWEVVRIEVPPPVARYIVEKGSITVDGISLTVSGLGAEPRDWFEVSLIPTTRELTTLGRTPVGTQVNLEVDVIAKYVERLLQNAPTGDLTR
>NZ_CP011883.2|WP_054880147.1|1859289_1861056_+|DUF3556-domain-containing-protein
MGFITPELPDVDRDTWQTEPRALRLQVVTRHWVEHGFGTPYAVYLLYLLKIAVYIAAPAVIISHTPGLGGLGHIGDWWMQPIVYQKVIVFTLLFEVLGLGCGSGPLTGRFMPPIGGFLYWLRPKTIRLPAWPGKVPLTSGDTRTSADVVLYVIVLLGGTWALLSPGSPGQGGPRLTAAGDVGLINPVLVAPTIVALVLLGLRDKTIFLAARGEHYWLKLFVFFFPFTDQIAAFKLIMLALWWGAATSKVNHHFPYVVAVMTSNNALLRSQLFNPIKHMLYIDPVNDLRPSRLPKLMAHVGGTTAEFLVPGILVLVAGGEPWRWFLIGFMVVFHLNILSNLPMGVPLEWNVFFIFSLFYLFGHYGSIRATDLRSPLLLALVIAAVAVVIAGNLFPEKISFLPAMRYYAGNWATSLWCFRAGAEERLEENIVKSSALVANQLAKLYGAATAEVMSDKVAAFRAMHTHGRALNGLLSRAIDNEADYRVREGEIVAGPLVGWNFGEGHLHNEQLLAAVQRRCSFDEGDVRVIVLEGQPIHIQKQWYRILDAKIGVIEAGYVEVADMLTRQPWPEPGDEFPVHVTTQHSASGR
>NZ_CP011883.2|WP_082607569.1|1861308_1861890_+|hypothetical-protein
MKIFDRFNTAILVSAGLCGAALAFSPGAAAAPLPMPTGGPTCIEQMSGLGAAPAAVPAVLPGPVAGAVPPVPLVPGGFPPVVPPGGFPPVVPPGGFPPVVPPGGFPPVVPAGAPAMGPLLAEDPAALGSGILAGKGRPTAPPQAALSGFVVLPGPPASVEAPPAAAPVAAPAPADAAAAEPLPCCGEAAPPVR
>NZ_CP011883.2|WP_054880996.1|1862812_1863628_-|L,D-transpeptidase
MGTMRAIVRCVLVVIGIAAAVVAGPVGASLAAVNQSSGLAITSVLPTRGAVVGVAHPVVVTFGAPVTNRKAAERAIEVHSAPAMTGKFDWLDSTVVQWVPDRYWPAHSTIALSVGGLSTNFKTGPAVVGVADISDHTFTVTIDGVEAETPPPLPTPHHRPHWGEEGVMPASMGKAEFPTPAGNYTVMSKNRSVIMDSSSVGIPVDDPEGYRLSVDYAVRISSRGLYVHSAPWAVQSMGFDNTSHGCISLSPADAEWYYDTVNIGDPVIVKE
>NZ_CP011883.2|WP_047316257.1|1863899_1864919_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRVGINGFGRIGRNFYRALLAQQEQGIADVQVVAVNDITDNSTLAHLLKFDSILGRLPHDVSLEGEDTIVVGPAKIKALAVREGPTALPWRDLGVDVVVESTGLFTNAAKAKGHLEAGAKKVIISAPATDPDITIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLHDEFGIVKGLMTTVHAYTQDQNLQDGPHSDLRRARAAALNIVPTSTGAAKAIGLVMPELKGKLDGYALRVPIPTGSVTDLTADLSKSASADEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDNQAKVVSWYDNEWGYSNRLVDLIALVGKSL
>NZ_CP011883.2|WP_047316256.1|1864921_1866172_+|phosphoglycerate-kinase
MNIPNLKDLLAEGVSGRGVLVRCDLNVPLDDDGAITDLGRVTASVPTLKALLEAGAKVVVAAHLGRPKGGPDPKLSLAPVAAALGEQLGQHVQLAGDVVGSDALARAEGLTDGDILLLDNIRFDARETSKDDAQRLALAKKLAELVWPGGAFVSDGFGVVHRRQASVYDVATLLPHYAGTLVADEIRVLEQLTSSTKRPYAVVLGGSKVSDKLGVIESLATKADSIVIGGGMCFTFLAAQGFPVGRSLLETEMIETCRRLLDTYADVLRLPMDIVVTEKFAADSPPQTVAADAIPDGLMGLDIGPGSVKRFAALLSNASTIFWNGPMGVFEFPAYAAGTRGVAEAIVAATGKGAFSVVGGGDSAAAMRVLGLPEGSVSHISTGGGASLEYLEGKTLPGIEVLGEPQPGQSKGGGDS
>NZ_CP011883.2|WP_054880145.1|1866168_1866954_+|triose-phosphate-isomerase
MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLTYGAQDLSQHDPGAYTGDISGAFLAKLGCSFVVVGHSERRTYHDEDDALVAAKTAAALKNSLTPIVCIGEHLEIREAGEHVSHCQNQLRGSLAGLSPKQIGNVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASSGIAETVRVLYGGSVNAKNIGDIVAQQDVDGGLVGGASLDGEQFATLAAIAAGGPLS
>NZ_CP011883.2|WP_054880144.1|1867240_1868602_+|HNH-endonuclease
MFDQQVVARFDELFERRYPSMTSESAVLVDRICSWSRAENRAAAAQLVAIGDLFGYRLARCAETEAWAIDTMAAVAAEVAAALRVSQGLAASRLRYARAMRERLPKVAAVDGLLAVKVVRWPSMTRGRLAGQVDKIVAKADADAVRRRTQRRVDREIWIGECADGVSEIHGSLLTPDAQALDTRLTALAATVCEHDPRSREQRRADAVGALAAGADRLGCRCGRRDCVAGKRRAATSVVIHVIAEQATIDGGGLAPASQVGADGLIAPEVVAELAKSARLVALVHPADAAPEPGYVPSAALADFVRCRDLTCRWPGCDRPAIDCDLDHTIPYAAGGPTHASNLKCYCRTHHLVKTFWGWREQQLPDGTLILTSPSGCTYVTTPGSALLFPSLCRSTGGMPAPEADPLPQYCGDRTAMMPKRRRTRAQDRAHRIATERRQNHHARTTPPAGPAP
>NZ_CP011883.2|WP_047313827.1|1868931_1869165_+|preprotein-translocase-subunit-SecG
MELALQITLVVTSILVVLLVLLHRAKGGGLSTLFGGGVQSSLSGSTVVEKNLDRLTLFITGIWLVSIIGVALLIKYR
>NZ_CP011883.2|WP_054880143.1|1869194_1871999_+|phosphoenolpyruvate-carboxylase
MVEVSDAVLEPIGAVQRTRLGREATEPMRADIRLLGSILGDTVREQNGDEVFDLVERARVESFRVRRSEIDRAELARMFSALDIHLAIPIIRAFSHFALLANVAEDIHRERRRHIHADAGEPPQDSSLAATYAKLDLAELDSATVADALMGAVVSPVITAHPTETRRRTVFVTQHRITELMRLHAEGHTETDDGRSIERELRRQVLTLWQTALIRLSRLQITDEIDVGLRYYPAALFQVIPQVNSEVRNALRARWPDAELLSDPLLQPGSWIGGDRDGNPNVTADVVRRATGSAAYTAVAHYLAELTHLEQELSMSARLITVTPELAALAAGCQDAARADEPYRRALRVIRGRLSATAADILDRQPPDQLDLGLPPYSVPAELRADLDTIEASLRTHGAALLADDRLALLREGVGVFGFHLCGLDLRQNSDVHEQVVAELLAWAGVHPDYRSLPEDQRVELLAGELGIRRPLVGDRAQLSELARGELAILAAAAHAVKIYGQAAVSNYIISMCQSVSDVLEAAILLKEAGLWDASGPQPYCPVGISPLFETIDDLHNGAVILHAMLELPLYRALVAARGDWQEVMLGYSDSNKDGGYLTANWAVYRAELALVDVARKTGIRLRLFHGRGGTVGRGGGPSYQAILAQPPGAVNGSLRLTEQGEVIAAKYAEPQMARRNLESLVAATLESTLLDVEGLGDAAEPAYAVLDEVATLARRAYTELVSTPGFVDYFQASTPVSEIGSLNIGSRPTSRKPTASIADLRAIPWVLAWSQSRVMLPGWYGTGSAFQQWIAAGPESESQRAEILHDLYQRWPFFRSVLSNMAQVLAKSDLGLAARYAELVADEALRRRVFDKIVDEHQRTIAMHKLITGQDDLLADNPALARSVFNRFPYLEPLNHLQVELLRRYRSGDDDELVQRGILLTMNGLASALRNSG
>NZ_CP011883.2|WP_054880142.1|1872271_1873015_-|6-phosphogluconolactonase
MSASVEIFPDSETMIGAAGKRLADTIRSAVAARERALIVLTGGGSGIGLLRDLAIRGRQIDWSRVHLFWGDERYVPEDDDERNEKQARVALLDHIAIPPSQVHPMPAGGGEFGDDLEAAALAYEQLLAANAAPGDPTPNFDVHLLGMGPEGHINSLFPDTTAVRETSRMVVGVGDSPKPPPERITLTLPAIQRSREVWLLVSGAAKADAVAAAIGGAPPASIPAAGAVGLETTLWLLDEQAAAKLPG

Crispr_ID: NZ_CP011883_13

• CRISPR_ID: NZ_CP011883_13
• CRISPR_location: 2135356-2135541
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_13

Consensus_repeat	Method
CGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCT	CRISPRCasFinder

spacers of NZ_CP011883_13

>13.1|2135400|98|NZ_CP011883|CRISPRCasFinder
TAGGCACCGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCTCGTGACCCGCGAAGCCTTGGTAGAAGTGCAAGACGAATCATGACCCG

CRISPR arrays and Neighbor proteins around NZ_CP011883_13

CRISPR arrays

The CRISPR arrays of NZ_CP011883_13

>merge|NZ_CP011883|13|2135356-2135541|CRISPRCasFinder
CGCCGACGACGATGCAGAGCGCAGCGATGAAGAGGAGTGGCGCCTAGGCACCGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCTCGTGACCCGCGAAGCCTTGGTAGAAGTGCAAGACGAATCATGACCCGCGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCT

>NZ_CP011883|13|13|2135356-2135541|CRISPRCasFinder
CGCCGACGACGATGCAGAGCGCAGCGATGAAGAGGAGTGGCGCC	TAGGCACCGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCTCGTGACCCGCGAAGCCTTGGTAGAAGTGCAAGACGAATCATGACCCG
CGCCGACGACGATGCAGAGCGCAGCGATGAGGAGGAGCGGCGCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_047316921.1|2139742_2140567_+|cyclase-family-protein	unknown	unknown	gnl|CDD|224790
NZ_CP011883.2|WP_054880981.1|2143366_2144644_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223587
NZ_CP011883.2|WP_047313993.1|2124247_2125429_+|thiamine-pyrophosphokinase	unknown	unknown	gnl|CDD|227162
NZ_CP011883.2|WP_082607576.1|2128279_2128969_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239516
NZ_CP011883.2|WP_156406746.1|2142834_2142981_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880038.1|2129925_2130678_-|O-methyltransferase	unknown	unknown	gnl|CDD|226607
NZ_CP011883.2|WP_054880035.1|2142039_2142576_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054880036.1|2140783_2141557_+|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP011883.2|WP_047313995.1|2128965_2129916_+|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl|CDD|234713
NZ_CP011883.2|WP_156406747.1|2145232_2145910_-|glycoside-hydrolase	unknown	unknown	unknown
NZ_CP011883.2|WP_054880040.1|2122266_2124039_+|DNA-repair-protein-RecN	unknown	unknown	gnl|CDD|273187
NZ_CP011883.2|WP_047316097.1|2144802_2145006_+|cold-shock-protein	unknown	unknown	gnl|CDD|224197
NZ_CP011883.2|WP_047314034.1|2126544_2128323_+|CTP-synthase	unknown	unknown	gnl|CDD|235437
NZ_CP011883.2|WP_047314001.1|2137670_2139062_+|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl|CDD|179525
NZ_CP011883.2|WP_047313997.1|2131688_2133215_+|PE-PPE-domain-containing-protein	unknown	unknown	gnl|CDD|369775
NZ_CP011883.2|WP_047313998.1|2133698_2134562_+|ParA-family-protein	unknown	unknown	gnl|CDD|379293
NZ_CP011883.2|WP_156166347.1|2130720_2131572_+|PPE-domain-containing-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054880039.1|2125449_2126394_+|copper-transporter	unknown	unknown	gnl|CDD|378653
NZ_CP011883.2|WP_047314000.1|2137002_2137674_+|(d)CMP-kinase	unknown	unknown	gnl|CDD|234579
NZ_CP011883.2|WP_156166348.1|2136232_2137006_+|pseudouridine-synthase	unknown	unknown	gnl|CDD|224108

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_047316921.1|2139742_2140567_+|cyclase-family-protein	gnl|CDD|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	1.09326e-65
NZ_CP011883.2|WP_054880981.1|2143366_2144644_+|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	5.56593e-120
NZ_CP011883.2|WP_047313993.1|2124247_2125429_+|thiamine-pyrophosphokinase	gnl|CDD|227162	COG4825, COG4825, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	0
NZ_CP011883.2|WP_082607576.1|2128279_2128969_+|NUDIX-hydrolase	gnl|CDD|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.90673e-46
NZ_CP011883.2|WP_054880038.1|2129925_2130678_-|O-methyltransferase	gnl|CDD|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	3.01434e-48
NZ_CP011883.2|WP_054880036.1|2140783_2141557_+|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.4138e-58
NZ_CP011883.2|WP_047313995.1|2128965_2129916_+|site-specific-tyrosine-recombinase-XerD	gnl|CDD|234713	PRK00283, xerD, tyrosine recombinase.	1.44722e-150
NZ_CP011883.2|WP_054880040.1|2122266_2124039_+|DNA-repair-protein-RecN	gnl|CDD|273187	TIGR00634, DNA_repair_protein_RecN, DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP011883.2|WP_047316097.1|2144802_2145006_+|cold-shock-protein	gnl|CDD|224197	COG1278, CspC, Cold shock proteins [Transcription].	8.77403e-36
NZ_CP011883.2|WP_047314034.1|2126544_2128323_+|CTP-synthase	gnl|CDD|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP011883.2|WP_047314001.1|2137670_2139062_+|ribosome-biogenesis-GTPase-Der	gnl|CDD|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
NZ_CP011883.2|WP_047313997.1|2131688_2133215_+|PE-PPE-domain-containing-protein	gnl|CDD|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	4.72459e-87
NZ_CP011883.2|WP_047313998.1|2133698_2134562_+|ParA-family-protein	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.84783e-82
NZ_CP011883.2|WP_156166347.1|2130720_2131572_+|PPE-domain-containing-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.31699e-53
NZ_CP011883.2|WP_054880039.1|2125449_2126394_+|copper-transporter	gnl|CDD|378653	pfam11382, MctB, Copper transport outer membrane protein, MctB. Outer membrane channel protein MctB in Mycobacterium tuberculosis is part of a Cu resistance mechanism that ensures low intracellular Cu levels in the bacterium. Human resisitance to bacteria, mediated via IFN-gamma-mediated activation of macrophages, may involve the use of reactive Cu(1) in the presence of hyrodgen peroxide, since acitivated Cu is toxic to bacteria. IFN-gamma stimulates the trafficking of the Cu transporter ATP7a to the vesicles that fuse with phagosomes and these phagosomes are found to have a high Cu content and an increaseed bactericidal activity against E.coli. Using MctB, Mycobacterium tuberculosis may limit the amount of excess Cu within it whole in the host.	1.30555e-88
NZ_CP011883.2|WP_047314000.1|2137002_2137674_+|(d)CMP-kinase	gnl|CDD|234579	PRK00023, cmk, (d)CMP kinase.	2.95665e-108
NZ_CP011883.2|WP_156166348.1|2136232_2137006_+|pseudouridine-synthase	gnl|CDD|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.22314e-98

Protein sequences

>NZ_CP011883.2|WP_047313998.1|2133698_2134562_+|ParA-family-protein
MTDHADSVVEIGLTGRPPRAIPEPRPRSSHGPAKVVAMCNQKGGVGKTTSTINLGAALTEFGRRVLLVDIDPQGALSAGLGVPHYELDRTIHNLLVEPRVSIDDVLIHTRVRHLDLIPSNIDLSAAEIQLVNEVGREQTLARALHPVLDRYDYVLIDCQPSLGLLTVNGLACAEGVVIPTECEFFSLRGLALLTDTVDKVRDRLNPKLEISGILITRYDPRTVNAREVMARVVERFGDLVFDTVITRTVRFPETSVAGEPITTWAPKSGGAMAYRALAREFIDRFGA
>NZ_CP011883.2|WP_047313997.1|2131688_2133215_+|PE-PPE-domain-containing-protein
MSFVTVASDAVETAAEDLSGVVSTIESASTRAAPATTMVLPPAADSVSTRLAALFNEHGQVYQSVSTQAVTLYEEFVDTLSVSGGSYAESEEANVLALQPPLGRAPLSATRVSGRGLTSISTLLAEDEVTALIMGGTMNPLPDAGYVRQINNAFIQTGFPGAVPRGVFTPEQFWPVTPHLGNLTFNRSVAEGVRLLDTAVDTELSSGNPAVVFGYSQSATIAHNYINSLVAVGSPYPDDISFMMVGSPNNPVGGLLSRFPGFHIPFLDVPFNGATSANIPYQTSIYTAQYDGIAHAPQFPLNVLSDINAVMGYFSVHMDYPNLLADQVANAVPLPTSPGYTGNTNYYMFLTQDLPLLQPIRAIPYIGPPIADLLQPQLRVLVDLGYADFGPGGNYADIPTPAGLLAIPDPFAVTYYLIKGGLQAAYGAAVDIGVQAGLIGPEWFPTSYPWVPSINPGLHFYWGQSQVTLLSVLSGLLGQMLYWIPPYVFEWFGFDPVWWTGVQTGQAA
>NZ_CP011883.2|WP_156166347.1|2130720_2131572_+|PPE-domain-containing-protein
MTLRGIDATIRYAPVGGGWGKHRVGLVFRCIDRTYPVGIVGIGGWGRLVTSFLALSPEDHSVRMFTGVGSGSLFTAAAAWDSLAADLELSAASFKSVIEGLSASGLWLGPASVAMTAVAGRYLGWLMTTAACAEQLAVNARMGAEVFEAARAATVPPAVVATNRELLMSLVATNVLSQNSPAIAATDAEYGQMWAQNVAAMMRYETEVDALEAAVRPFNPPPSQAPPPVGPETANLFGGESVSATLSSALAGAVSAAVGRARSLGGMMSVPPSWSFCGEDFLG
>NZ_CP011883.2|WP_054880038.1|2129925_2130678_-|O-methyltransferase
MNLKGRIAPLRWSVWRMAAGIRNITTTGQIGDGREAAAVDFVLRNARVGDIDDVLATIDRFAYEKSMLINVGDEKGPLLDAAVRRANPALALELGTYCGYGALRIARAAPNAKVYSVELAEANAANARQIWAHAGVADRVTCVVGTIGDGGYTLNALASKHGFATGTLDFVFLDHDKKVYLDDLQSIVDRGWLHRGSIVVADNVMVPGAPKYRKYMREQQGAQWNTTEHKAHLEYQTLVPDLVLESEYLG
>NZ_CP011883.2|WP_047313995.1|2128965_2129916_+|site-specific-tyrosine-recombinase-XerD
MTALALQTQLQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLSDRGIHDLAKVGEDDVSEFLVALRRGDPDSGAAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTIDEVLALLEGAGGDSPADGPLTLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGSKQRLVPVGRPAVQALDAYLVRGRCELARRGTGTLATPAIFLNARGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAK
>NZ_CP011883.2|WP_082607576.1|2128279_2128969_+|NUDIX-hydrolase
MASSGRSLSLRLVAEQPRGLGGVPQHTFETTSSETVHRGNIFALRRDQVRMPGGRTVVREVVEHYGAVAIVAMDDDNNIPMIYQYRHTYGRRLWELPAGLLDVAGEPPHLSAVRELKEEVGLQASTWQVLVDLNTAPGFSDESVRIYLATGLTEVARPEAHDEEADMTMRWYPIDEAARRVFSGEIVNSIAIAGVLAAHAVTTGFAQPRPLDSRWIDKPTAFAARKAAQ
>NZ_CP011883.2|WP_047314034.1|2126544_2128323_+|CTP-synthase
MRKHPQSATKHLFVSGGVASSLGKGLTASSLGQLLTARGLHVTMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDVGHYERFLDRDLSGSANVTTGQVYSTVIAKERRGEYLGDTVQVIPHITDEIKQRIMAMAQPDAGGHRPDVVITEIGGTVGDIESQPFLEAARQVRHDLGRENVFFLHVSLVPYLAPSGELKTKPTQHSVAALRSIGITPDALILRCDRDVPEALKNKIALMCDVDIDGVISTPDAPSIYDIPKVLHREELDAFVVRRLNLPFRDVDWTEWDDLLRRVHEPHGTVRIALVGKYVDLSDAYLSVTEALRAGGFKHHAKVEIAWVASDDCETATGAAAALADVHGVLIPGGFGIRGIEGKIGAIRYARARGLPVLGLCLGLQCIVIEAARSVGLAQANSAEFEPATPDPVISTMADQEEIVAGEADLGGTMRLGAYPAVLQPDSIVAQAYGTTQVSERHRHRYEVNNAYRDRIADSGLRISGTSPDGHLVEFVEYPADLHPFVVGTQAHPELKSRPTRPHPLFAAFVGAAIDYKSAELLPVEIPEIPAIPENLERVPKGNQHRDGVERSLPEPAARG
>NZ_CP011883.2|WP_054880039.1|2125449_2126394_+|copper-transporter
MISLRQHAFSLAAVFLALAVGVVLGSGFLSDTLLSSLRAEKRDLYTQISGLNDQKNVLNEKLSAANNFDNQLLGRIVHDALVGKSVVVFRTPDAKDDDVTAVSKIVGQAGGTVTGTVSLTQEFVDANSAEKLRTVVNSSVLPAGTQLSTKLVDQGSQAGDLLGIALLINANPAVGDVGDAARGTVLAALRDTGFITYQVADHPGAANAALVVTGGSLPQDAGNQGVSVARFAAALAPHGSGTLLAGRDGSATGAAAVAVARADAGMAAAISTVDNVDAEPGRITAILGLHDLLSGGHAGQYGTGHGATSITVPQ
>NZ_CP011883.2|WP_047313993.1|2124247_2125429_+|thiamine-pyrophosphokinase
MRMSALLSRNTSRPGLVGTARVDRNIDRLLRRVCPGDIVVLDVLDLDRITADALVEADIAAVVNASPSVSGRYPNLGPEVLVNNGVTLIDETGPEVFKKIKDGAKIRLHEGGVYAGDRRLIRGTERTDHDIADLMREAKSGLAAHLEAFAGNTIEFIKSESPLLIDGIGIPDIDVDLRRRHVVIVADEPSAADDLKSLKPFIKEYQPVLVGVSGGADVLRKAGYRPQLIVGDPEQISTEALKCGAHVVLPADADGHAPGLERIQDLGVGAMTFPAAGSATDLALLLADHHGAALLVTAGHTANIETFFDRTRTQSNPSTFLTRLRVGEKLVDAKAVATLYRNHISAGAIALLAMTMLIAVIVALWVSRTDGVVLHWVVDYWNRFSLWIQHLVA
>NZ_CP011883.2|WP_054880040.1|2122266_2124039_+|DNA-repair-protein-RecN
MLTEIRIESLGAISVATAEFDRGLTVLTGETGTGKTMVVTGLHLLGGARADASRVRSGANRAVVEGRFTTTDLDDMVVAQLDGMLDASGAERDEDGSVIALRSVSRDGPSRAYLGGRSVPAKSLSGFTTELLALHGQNDQLRLMRPDEQRAALDRYAAAGPMCERYRKLRDAWLSARRDLIDRRNRARELAQEADRLKFALSEIDRVGPQPGEDNALVADIVRLSELDTLREAAVNARAALSGALDDADVSGSNAVDRLGQAKVALESTDDATLRAFADQIGEALTVVVDAGRELGSYLEELPVDASALESKLARQAQLRTLTRKYAADIDGVLQWASESRERLAQLDVSPEGLAGIQSRVDELAHELSQAAVDLSKIRRKAANRLAKEVTAELSALAMADAEFTISVTTDRILPADHNDSAAVTLPSGEVARAGADGVDQIEFGFAAHRGMTVLPLAKSASGGELSRVMLALEVVLAASRKCSVGTTMVFDEVDAGVGGWAAVQIGRRLARLARTHQVIVVTHLPQVAAYADVHLVVHSAGPDGASAVRRLAGDDRVAELARMLAGLGESDSGRAHARELLDAAQNDEI
>NZ_CP011883.2|WP_156166348.1|2136232_2137006_+|pseudouridine-synthase
MMVEIHDSRKDRGTGAVRLQKVLSQAGIASRRAAEKLIIDGRVEVDGQLVTELGTRVNPDVSVVRVDGTRVVIDDSLVYLALNKPRGMHSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLILLTNDGELAHRLMHPSHEVPKTYLATVKGSVPRGLGKKLRAGLELDDGPAHVDDFAVVDAIPGKTLVRLTLHEGRKRIVRRLLAAAGFPVEALVRTDIGAVSLGDQRPGSLRALRRDEIGQLYKAVGL
>NZ_CP011883.2|WP_047314000.1|2137002_2137674_+|(d)CMP-kinase
MTDIVIAIDGPAGTGKSSVSRGLARELGARYLDTGAMYRMVTLAMLRAGIDPEDAAAVGASVWKVQMRSDGDRYFLAEEDVSAEIRAEEVTQAVSAVSSVPAVRARLVGLQRQMAEGRGSVVVEGRDIGTVVLPDAPVKIFLTASAETRARRRNDQNVASGLADDYEGVLADVRRRDHLDSNRAVSPLRAAEDAVIVDTSEMTEAEVIAHLMDLVKQRSGAVR
>NZ_CP011883.2|WP_047314001.1|2137670_2139062_+|ribosome-biogenesis-GTPase-Der
MSQDGTWSDESDWGLDDSDVAEFGPAPVVAVVGRPNVGKSTLVNRILGRREAVVQDVPGVTRDRVSYDALWTGRRFVVQDTGGWEPDAKGLQQLVAEQASVAMRTADAVILVVDVGVGATAADEAAARILLRSGKPVFLAANKVDSEKSESDASALWSLGLGEPHAISAMHGRGVADLLDEVLAALPDAAESTSLGGGPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEVAGTTVDPVDSLIEMGGKVWRFVDTAGLRRKVGQASGHEFYASVRTHGAIDSAEVVIVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDRVDEDRRDLLEREIDRELVQVRWAQRVNISAKTGRAVQKLVPAMESSLASWDTRIATGPLNTWIKEVVAATPPPVRGGKQPRILFATQATARPPTFVLFTTGFLEAGYRRFLERRLRETFGFEGSPIRINVRVREKRGTKRR
>NZ_CP011883.2|WP_047316921.1|2139742_2140567_+|cyclase-family-protein
MSFTWPIGEAEAKLQFYDLSHPWGHGVPASPYSEDVKIERLQNMARGRVLTQKITTVMHSGTHIDAPVHVFEGTPCVHEMPLSAFFGTGVVVSIPKGKWEVVTVEDLEKAAPDIRPGDIVIVNTGWHHKYADSAAYYAHSPGFCKEAGEWFVAKGVKALGTDTPALDHPMATALGPHGPGEHVGGLLPWAVREYEDQTGHQVLDDFPEWEPCHRAILSKGIYGFENVGGELEKVTNSRVTFAAFPWRWVGGDGCIVRLVAIVDPTGTYRIETAA
>NZ_CP011883.2|WP_054880036.1|2140783_2141557_+|IclR-family-transcriptional-regulator
MTVNAEEHDARGGGIQVIARAAEILRLLQAHPGGLNQAAISERLGMARSTVSRILNALDDEGLVTAGAARGRFRLGPEIARMARTVRLSLVMDLHPFLEELSRELQETVDLSMLDGDRANFVDQVIAPHRLRAISAVGESFPLYCCANGKAMLASLPPVQRTQALPSRLTRLTANTITTRAVLHKELDRIRVEGVAYDREEQSEGICAVGAVVQAATEQMAAVSVPVPAQRFYGRESELAQALLAWVEKVNNWLENV
>NZ_CP011883.2|WP_054880035.1|2142039_2142576_+|hypothetical-protein
MFAAFGFEALGVVVGDMYFIDPVPLAGQETPERGVRLELRLVDRAEPQGSIYAGIPIAFTRPVWRVDLFGSTESPPGTLDRAHHHPRFDGWEPGPRHFVAELSADPLSWLVDQLANPAAVLARAGVDSDLVTEADKTGLAEAAPEIVAVVKRMLDGVRDGELAPAPTEPVAAARTGWL
>NZ_CP011883.2|WP_156406746.1|2142834_2142981_+|hypothetical-protein
MMVTPIRVAAVVQVMTIPAVIGIDDGRFLLAVGHPEVDRKRQTLTRTK
>NZ_CP011883.2|WP_054880981.1|2143366_2144644_+|DEAD/DEAH-box-helicase
MITDKTFADLGVGTPLVGVLTAAGITHPFPIQVQTLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSRLSASKRSPSRPSGLVLAPTRELATQITATLEPLAAAYNLRVTTIFGGVSQNRQVIALKSGVDIVVACPGRLEDLMKQRLISLDSVEVTVIDEADHMADLGFLPGVTRILAATPAGGQRLLFSATLDNGVDKLVKRFLRNQVLHSVDELNAPVPAMTHHVFHVANAEAKKELVHRLASGAGRRILFMRTKHHARKLARQLTESGIPSVDLHGNLSQPARDRNLAAFTAGEARVLVATDIAARGVHVDQVELVVHIDPPSEHKAYLHRSGRTARAGNAGNVVTVVLPEQRTDTQALLQKAGICVTPLEVAADSAEVHALVGEIAPYRVSAPKAAQPQPSQHREPSGVRRRRRRRRPQRSPR
>NZ_CP011883.2|WP_047316097.1|2144802_2145006_+|cold-shock-protein
MAQGTVKWFNGDKGFGFIAPDDGSKDVFVHFSEIRGSGFRTLEENQRVEFEVEQGPKGPQAVGVTGV
>NZ_CP011883.2|WP_156406747.1|2145232_2145910_-|glycoside-hydrolase
MLFVGTVVLANGRGRWLAIAVSLVVSAAMLYAQSTEHPCCAKTPTIARPRPVPAPAGAPPIASPAEADSLAANAPVAAQQFLVALPRGVASEERLQMKTIWAARAISVLFPQIATIYGFRQDPLKWHPNGLAIDVMIPNHDTPDGIELGNQIAGYALANAKRWGVLHVIWRQKIYPGIGAPSWTADSGSETANHYDHVHIATDGGGYPTGHETYYIGSMSSTPAA

Crispr_ID: NZ_CP011883_14

• CRISPR_ID: NZ_CP011883_14
• CRISPR_location: 2240037-2240120
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_14

Consensus_repeat	Method
CCTAGCCCAGCGACGATGCGCGCCG	CRISPRCasFinder

spacers of NZ_CP011883_14

>14.1|2240062|34|NZ_CP011883|CRISPRCasFinder
TGCAACGGCGCGAGGAGAAGCTGAGCGATCCAGC

CRISPR arrays and Neighbor proteins around NZ_CP011883_14

CRISPR arrays

The CRISPR arrays of NZ_CP011883_14

>merge|NZ_CP011883|14|2240037-2240120|CRISPRCasFinder
CCTAGCCCAGCGACGATGCGCGCCGTGCAACGGCGCGAGGAGAAGCTGAGCGATCCAGCCCTAGCCCAGCGACGATGCGCGCCG

>NZ_CP011883|14|14|2240037-2240120|CRISPRCasFinder
CCTAGCCCAGCGACGATGCGCGCCG	TGCAACGGCGCGAGGAGAAGCTGAGCGATCCAGC
CCTAGCCCAGCGACGATGCGCGCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_054879997.1|2230378_2232025_+|acetolactate-synthase	unknown	unknown	gnl|CDD|235629
NZ_CP011883.2|WP_054879996.1|2232133_2234470_+|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl|CDD|237060
NZ_CP011883.2|WP_054879993.1|2244220_2245081_-|haloalkane-dehalogenase	unknown	unknown	gnl|CDD|179554
NZ_CP011883.2|WP_054879995.1|2237546_2237945_+|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl|CDD|234918
NZ_CP011883.2|WP_047314190.1|2235244_2236159_+|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|226396
NZ_CP011883.2|WP_047314177.1|2249819_2250866_-|HlyC/CorC-family-transporter	unknown	unknown	gnl|CDD|224173
NZ_CP011883.2|WP_047314185.1|2238189_2238678_+|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|224630
NZ_CP011883.2|WP_156166388.1|2240324_2241020_+|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133380
NZ_CP011883.2|WP_047314176.1|2250865_2252245_-|HlyC/CorC-family-transporter	unknown	unknown	gnl|CDD|224173
NZ_CP011883.2|WP_047314189.1|2236220_2236553_+|DUF1290-domain-containing-protein	unknown	unknown	gnl|CDD|226374
NZ_CP011883.2|WP_047314178.1|2247353_2249561_-|malate-synthase-G	unknown	unknown	gnl|CDD|235097
NZ_CP011883.2|WP_047314184.1|2238674_2239430_+|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378
NZ_CP011883.2|WP_047314191.1|2234622_2235252_+|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl|CDD|223632
NZ_CP011883.2|WP_054879992.1|2245106_2247251_-|solute-binding-protein	unknown	unknown	gnl|CDD|238733
NZ_CP011883.2|WP_054880971.1|2236620_2237511_+|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|226396
NZ_CP011883.2|WP_054879990.1|2255513_2256464_-|M56-family-metallopeptidase	unknown	unknown	gnl|CDD|320685
NZ_CP011883.2|WP_054879991.1|2252463_2253900_-|GuaB1-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl|CDD|181127
NZ_CP011883.2|WP_054879994.1|2241353_2244194_+|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl|CDD|235432
NZ_CP011883.2|WP_047314194.1|2228369_2230289_-|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl|CDD|226646
NZ_CP011883.2|WP_054880970.1|2253934_2255386_-|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl|CDD|236453

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054879997.1|2230378_2232025_+|acetolactate-synthase	gnl|CDD|235629	PRK05858, PRK05858, acetolactate synthase.	0
NZ_CP011883.2|WP_054879996.1|2232133_2234470_+|accessory-Sec-system-translocase-SecA2	gnl|CDD|237060	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP011883.2|WP_054879993.1|2244220_2245081_-|haloalkane-dehalogenase	gnl|CDD|179554	PRK03204, PRK03204, haloalkane dehalogenase; Provisional.	0
NZ_CP011883.2|WP_054879995.1|2237546_2237945_+|glycine-cleavage-system-protein-GcvH	gnl|CDD|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.5195e-67
NZ_CP011883.2|WP_047314190.1|2235244_2236159_+|DUF881-domain-containing-protein	gnl|CDD|226396	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown].	1.22178e-70
NZ_CP011883.2|WP_047314177.1|2249819_2250866_-|HlyC/CorC-family-transporter	gnl|CDD|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	5.50726e-91
NZ_CP011883.2|WP_047314185.1|2238189_2238678_+|FHA-domain-containing-protein	gnl|CDD|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	3.37454e-36
NZ_CP011883.2|WP_156166388.1|2240324_2241020_+|MerR-family-transcriptional-regulator	gnl|CDD|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	4.29728e-21
NZ_CP011883.2|WP_047314176.1|2250865_2252245_-|HlyC/CorC-family-transporter	gnl|CDD|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.62954e-120
NZ_CP011883.2|WP_047314189.1|2236220_2236553_+|DUF1290-domain-containing-protein	gnl|CDD|226374	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown].	3.08721e-41
NZ_CP011883.2|WP_047314178.1|2247353_2249561_-|malate-synthase-G	gnl|CDD|235097	PRK02999, PRK02999, malate synthase G; Provisional.	0
NZ_CP011883.2|WP_047314184.1|2238674_2239430_+|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	8.6231e-19
NZ_CP011883.2|WP_047314191.1|2234622_2235252_+|CDP-alcohol-phosphatidyltransferase-family-protein	gnl|CDD|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	4.80736e-26
NZ_CP011883.2|WP_054879992.1|2245106_2247251_-|solute-binding-protein	gnl|CDD|238733	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the members of this subgroup. All members of this subgroup however have a conserved MIDAS motif. .	6.15217e-46
NZ_CP011883.2|WP_054880971.1|2236620_2237511_+|DUF881-domain-containing-protein	gnl|CDD|226396	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown].	2.58861e-70
NZ_CP011883.2|WP_054879990.1|2255513_2256464_-|M56-family-metallopeptidase	gnl|CDD|320685	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	8.38367e-28
NZ_CP011883.2|WP_054879991.1|2252463_2253900_-|GuaB1-family-IMP-dehydrogenase-related-protein	gnl|CDD|181127	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein.	0
NZ_CP011883.2|WP_054879994.1|2241353_2244194_+|aminomethyl-transferring-glycine-dehydrogenase	gnl|CDD|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP011883.2|WP_047314194.1|2228369_2230289_-|ABC-transporter-ATP-binding-protein/permease	gnl|CDD|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
NZ_CP011883.2|WP_054880970.1|2253934_2255386_-|NADP-dependent-phosphogluconate-dehydrogenase	gnl|CDD|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0

Protein sequences

>NZ_CP011883.2|WP_047314184.1|2238674_2239430_+|MerR-family-transcriptional-regulator
MSAPDSPALAGMSIGAVLDLLRPDFPDVTISKIRFLEAEGLVTPQRSASGYRRFTAYDCARLRFILTAQRDHYLPLKVIRAQLDAQPDGELPPFGSPYAVPRLVSVTGSPGAGVGSGIGSDTAAVSPARIRLSREDLLDRSGVADDLLTALLKAGVITTGPGGFFDEHAVVILQCARALSEYGVEPRHLRAFRSAADRQSDLIAQIAGPIVKAGKAGARDRADDLAREVAALAITLHTSLIKSAVRGVLHR
>NZ_CP011883.2|WP_047314185.1|2238189_2238678_+|FHA-domain-containing-protein
MTDMDSGRQEDQTSDEVTVETTSVFRADFLNELDAPAQAGAESAVSGVEGLPAGSALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLEGNEFHVVDVGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLTGPKQGDDDGGTGGK
>NZ_CP011883.2|WP_054879995.1|2237546_2237945_+|glycine-cleavage-system-protein-GcvH
MSNIPSDLHYTAEHEWIRRSGEDTVRVGITDFAQSALGDVVFVQLPDVGAELTAGESFGEVESTKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHVSDVDALESATATLLDAEAYRGTLTE
>NZ_CP011883.2|WP_054880971.1|2236620_2237511_+|DUF881-domain-containing-protein
MSQDPSAHGGLPERESGDAPNLHNPPKADPKAHDAARHGRHELPADYPRQLSGSLRRTGLSGSLRSGRSRLAFGTLAILLCVLLGIAIVTQVRQTESGDSLETARPADLLVLLDSLRQREATLNTEVTELQNTLNALQASGNTDQAAIQSAQARLAALSILVGAVGVTGPGVTLTIDDPGPGVAPEAMLDVINELRAAGAEAIEINDAHQSVRVGVDTWVVGVPGSLTIDSKALSPPYSILAIGDPPTLAAAMNIPGGAEDSVKRVGARMSVQQADRVDVTTLRQPKPHQYAQPVK
>NZ_CP011883.2|WP_047314189.1|2236220_2236553_+|DUF1290-domain-containing-protein
MIGLAALAIGIVLGLVFHPSVPEVIQPYLPIAVVAALDAVFGGLRAYLERIFDPKVFVVSFVFNVLVAALIVYVGDQLGVGTQLSTAIIVVLGIRIFGNAAALRRRLFGA
>NZ_CP011883.2|WP_047314190.1|2235244_2236159_+|DUF881-domain-containing-protein
MAERERQLGGYDPNAGYNLHAAARPKKVPVPSLLRALLSEHLDPGYAAAAAERSRSTTPRARAFSWIWQALAAALVTTVFAAAVAQARSVAPGVRAAQQLLAISVRSTQTAAATLAQQRSVLSAQVDDVQRLVLAHNAEGQRLLNRLDALSLAAASTPVIGPGLTVTVTDPGIGPNLSDVSKQRMKGSQQIILDRDLQLVVNSLWASGAEAISVDGARIGPNVTIRQAGGAILVDNNPTSSPYTILAVGPPHTMRDVFDDSPGLQRLRLLEASYGVGVSVNVADGLTLPAGAIRDVKFAKQVGP
>NZ_CP011883.2|WP_047314191.1|2234622_2235252_+|CDP-alcohol-phosphatidyltransferase-family-protein
MEPVHPPNRVLTVPNLLSAIRLTLIPAFVYVLLVRHADGWAVAILVFSGASDWADGKIARLLDQSSRLGVLLDPAVDRLYMVTIPVVLALSGIVPWWFVVTLLARDALLAATLPLLWSRGLSALPVTYIGKAATFSLMVGFPFVLLGTWDTLWSRVLGACGWAFLIWGIYAYLWAFVLYAVQMTMVVRRMPKIKHQAHRQLVRKASEHG
>NZ_CP011883.2|WP_054879996.1|2232133_2234470_+|accessory-Sec-system-translocase-SecA2
MSKTTRTQPGRLSSRFWRLLGASTEQNLSRSLAEVTSAAAYDKEAADLGDEQLRKACGLLNLNDLADSDDIPQFLAIAREASERSTGLRPFDVQLLGALRMLAGDVIEMATGEGKTLAGAIAAAGYALAGRHVHVVTINDYLARRDAEWMGPLLEAMGLTVGWITAESTSEDRKAAYSCDVTYASVNEIGFDVLRDQLVTDVDDLVSPNPDVALIDEADSVLVDEALVPLVLAGTTHRETPRLEIIKLVGELVGGSDADEYFATDSDSRNVHLTDVGARKVEKALGGIDLYSEEHVGTTLTEVNVALHAHVLLQRDVHYIVRDDAVHLINASRGRIAQLQRWPDGLQAAVEAKEGIETTETGEVLDTITVQALINRYATVCGMTGTALAAGEQLRQFYKLGVSPIPPNTPNIREDESDRVYITAAAKNDAIVAHLAEVHETGQPVLVGTRDVAESEELHERLLRRGVPAVVLNAKNDAEEAQVIAEAGKFGAVTVSTQMAGRGTDIRLGGSDETDHDRVAELGGLHVVGTGRHHTERLDNQLRGRAGRQGDPGSSVFFSSWEDDVVAANLERNKLPMQTNEDGRIISPKTSGLLDHAQRVAEGRLLDVHANTWRYNQLIAQQRAIIVDRRNTLLRSATAREELAELAPKRYQELAQDVSEERLETICRLIMLYHLDRGWADHLAYLADIRESIHLRALGRQNPLDEFHRLAVDAFASLAADAIEAAQQTFETANVLDEEPGLDLSKLARPTSTWTYMVNDNPLSDDTLSTLSLPGVFR
>NZ_CP011883.2|WP_054879997.1|2230378_2232025_+|acetolactate-synthase
MSTDPVLAHSIHAGQLIARRLKASGVDTVFTLSGGHLFSIYDGCRSEGIRLIDTRHEQTAAFAAEGWSKVTRQPGVAVLTAGPGVTNAMSAMAAAQQNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVTPLARFAATAQSADAAGRLVDEALQAAVGAPSGVGFVDVPMDHAFSMADDLGGGPGALTNLPAAPAADPEALDRAAGLLAAAHRPVIMAGTNVWWGHAEAALLRLAEERQIPVLMNGMARGVVPADHPLAFSRARGKALGEADVALVVGVPMDFRLGFGKVFGPQTQLVVADRAEPDRDYPRPVAAGLYGDLPGILSALAVVGGTGHQDWTRALRTAETTARDLEKAELGDDRIPLHPMRVYAELASLLDRDAIVVIDAGDFGSYAGRVIDSYLPGCWLDSGPFGCLGSGPGYALAAKLARPDRQVVLLQGDGAFGFSGMEWDTLVRHQVSVVSVIGNNGIWGLEKHPMEALYGYSVVAELRPGTRYDEVVRALGGYGELVSAPGELRPALERAFASGLPSVVNVLTDPSVAYPRRSNLA
>NZ_CP011883.2|WP_047314194.1|2228369_2230289_-|ABC-transporter-ATP-binding-protein/permease
MELSLFQPSIDWGHALPDSLWWIAKAWAISAVCVVVVLVVLSFTTRWGRQYWRITRGYFIGPQSVGVWLMLAVLLLSVVTSVRLNVLFSYQSKDLYNALQAAFEGAGAQSDLVKQSGVHGFWMSLGIFSILAVIFIVRVMADIYLTQRFIIAWRVWLTDHLTADWLDQRAYYRERFIDNTIDNPDQRIQQDIDIFTAGAGGTPNVPSNGTGTTLLFGAVESVISVISFTAILWNLSGRLDVFGLEIPRAMFWIVIVYVLVATIITFWIGRPLIRLSFANEKLNAAFRYALVRLRDAAEAVAFYRGERAERKQLGRRFTPIIDNYRRYVSRTIGFLGWNASVSQTIVPLPWILQAPRLFAGKINLGDVGQTATAFGNIHDSLSFFRNNYAAFAAFRAAIIRLHGLVDANARSRELPHVATRSTDDGTVRVAAVEVRTPAGDQLIDPLELQLNCGDSLVITGRSGVGKTTLLRSLAELWPYASGTLSRPDGENETMFLSQLPYVPLGNLRGVVCYPNSPADIDEDTVRDTLTKVALTPLCDRLDEERDWAKVLSPGEQQRVAFARILLTKPKAIFLDESTSALDEGLEFALYEMLRSELPDSVVVSVSHRRAVELLHKQQLELLGGGQWRLGPVEKEPARV
>NZ_CP011883.2|WP_156166388.1|2240324_2241020_+|MerR-family-transcriptional-regulator
MTQLVTRARSARGTTVSEQPRQGQLDLADHRDTPTATTNGDIGLNGPTAVSGPVQPGLFPDDSVPDELVGYRGPSACQIAGITYRQLDYWARTSLVVPSIRGAAGSGSQRLYSFKDILVLKIVKRLLDTGISLHNIRVAVDHLRQRGVQDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELSGVIADFRGERADGGESIAAPEDELASRRKHRDRKIG
>NZ_CP011883.2|WP_054879994.1|2241353_2244194_+|aminomethyl-transferring-glycine-dehydrogenase
MSDQSTFAARHIGPNSEAVAAMLAVIGVDSLEDLAAKAVPSGILDNVADTGAAPGLDRLPPPATEAEALAELGALARANTVAVSMIGQGYYDTLTPPVLSRNILENPAWYTAYTPYQPEISQGRLEALLNFQTLVSDLTGLEIANASMLDEGTAAAEAMTLMHRAARGTANRLAVDVDVFAQTTAVLATRAKPLGIDIVAADLREGLPDGEFFGVITQLPGASGRITDWTALVAQAHDRGALVAVGADLLALTLITPPGEIGADVAFGTTQRFGVPMGFGGPHAGYLALHNRHARQLPGRLVGVSVDSDGTPAYRLALQTREQHIRRDKATSNICTAQVLLAVMAAMYASYHGAEGLTGIARRVHAQARDLAAGLSAAGVEVVHQTFFDTVLARVPGRAAHIQGAAKERGINVWLVDGDHVSVACDEATTDEHITAVLAAFAAAPTRASYPDPDIATRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEFARQHPFAPASDTPGLRRLISDLESWLVQITGYDAVSLQPNAGSQGEYAGLLAIHDYHASRGEPHRDICLIPSSAHGTNAASAALAGMRVVVVGCHDNGDVDLDDLRIKVSEHANRLSALMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNALVGLARPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPVAVRSHLASFLPGHPFAPELPPGQPVSSAPYGSASILPITWAYIRMMGANGLRAASLTAITSANYIARRLDEYFPVLYTGENGMVAHECILDLRPITKSTGVTVDDVAKRLADYGFHAPTMSFPVAGTLMVEPTESESLAEIDAFCEAMIAIRGEIARVGAGEWPAEDNPLRGAPHTAECLLASDWDHPYTREEAAYPLGKAFRPKVWPPVRRIDGAYGDRNLVCSCPPVEAFV
>NZ_CP011883.2|WP_054879993.1|2244220_2245081_-|haloalkane-dehalogenase
MRIDFTPDPQLYPFVSRWFDSSRGRIHYIDEGDGPPILLCHGNPTWSFLYRDIVVALRDRFRCIAPDYLGFGLSDRPVGFSYKIDEHARVVGELVDHLSLNGYLTMGQDWGGPIGMAVAVERADRVRGVILGNTWFWPADTWTTKAFSRVMSSPPMQHAILRRNFFVERLIPAGTERRPSAAVMAHYRAVQPNAAARLGVAEMPKQILAARPLLARLAHEVPAKLGAKPALLVWGMKDFAFRPGPTLPRMRETFPDHVLVELPTAKHFIQEDAPEAIAAAIVERFG
>NZ_CP011883.2|WP_054879992.1|2245106_2247251_-|solute-binding-protein
MGRHSMPDPEDSIDQPSDQFAALGPDQGDEIDHGPHHGYLGGIGYPEPVFEPAATGTPSDQSYPRGAEHPADSAPPAPDEPADYQRYWAEDHEDHYYAAGAVDDYPDFPPRPAGSSTSPQAPTALSRLFSASHRGVGEWQGGHRSDRGRRGVSIGVIVALVAVVVVVGTVILWSFLGHVLDNRKHQAAARCVGGQQTVAVVADPSIADYLQEFAQSYNASARPVGDHCMAVTVKPVGSEAALAGLNGKWPADLGGKPALWIPGSSISAARLAVTAGQKTISESHSLVTSPVLLAVRPEFEQALANRGWAELPGLQTNPNSLADLNLPAWGSLRLALPMNGNSDATFLAGEAVAAASVPADAPATQGVGAVRTLMSAQPKLADSSWAEAMSALLKPGDVATAPVHAVITTEQQLFQRGQSLSDAQSTLRSWLPQGPAPVADYPAVLLSGSWLTQEQAAAASEFTRFVQKPDQLAKLAKAGFRVIGVTPPSSPVTSFAAVPSPVSVGDEGIRATLAEAMIQPSSGVAVTIMLDQSMPTDEGGKTRLANVVAALDDKIKVMPPSSAMGLWTFDGREGRTEVTTGPLADPVNGQPRSAALTAALDKQYASNGGAVSFTTLRMIYQDILANYHAGQTNSVLVITAGPHTDQTLDGAGLQDFIRTSTDPAEPIAVNVIDFGADPDRATWEAVAQLSGGSYQNLSTSAAADLATTINTFLS
>NZ_CP011883.2|WP_047314178.1|2247353_2249561_-|malate-synthase-G
MTDRVSAGNLRVARVLYDFVNNEALPGTDIDPDSFWSGVDKVVADLTPQNQSLLNSRDQLQAQIDKWHRHRVIEPLDLDAYRQFLIDIGYLLPEPDDFTITTSGVDDEITTTAGPQLVVPVLNARFALNAANARWGSLYDALYGTDVIPETDGAEKGSGYNKVRGDKVIAYARKFMDQAVPLASDSWTHATGVSIVDGQLRIAIGADSTGLANPEKFVGYSGELGSPNWSVLLANHGLHIEILIDPESPIGKTDPAGIKDVILESAITTIMDFEDSVTAVDADDKVLGYRNWLGLNKGDLAEEVNKDGKTFTRVLNADRTYTTPSASGGGEQFTLPGRSLLFVRNVGHLMTNDAILVDGGDGQEKEVFEGIMDALFTSLVAIHGLKTGEINGPLTNSRTGSIYIVKPKMHGPAEVAFTCELFSRVEDVLGLPQGTLKVGIMDEERRTTLNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMIRKGAMKNSTWIKAYEDANVDIGLAAGFTGKAQIGKGMWAMTELMADMVEQKIGQPKAGATTAWVPSPTAATLHAMHYHQVDVAAVQQELAGKRRATVDQLLTIPLAKELAWAPEEIREEVDNNCQSILGYVVRWVNQGIGCSKVPDIHNVALMEDRATLRISSQLLANWLRHGVITSEDVRASLERMAPLVDQQNAGDAAYRPMAPNFDDSVAFLAAQELILSGAQQPNGYTEPILHRRRREFKAQNR
>NZ_CP011883.2|WP_047314177.1|2249819_2250866_-|HlyC/CorC-family-transporter
MQDMLGLLVAIVLIGANAFFVGAEFSLISARRDRLEALAEQGRASAVTVIRAGEQLSSMLAGAQLGVTVASILLGRIGEAAVANLLRTSFQLTDMPPPLLHTLSLVIALALVVTLHVLLGEMVPKNIALAGPERTAMLLVPPYLIYVRAARPFIVLYNKCANAVLRALGVEPKDELNITVSTAELSEMIAESVSEGLLDHEEHKRLTRALQIRTRVVADVARPLADIRAVPVAAAGCGPTVGAVEQALAQTGYSRFPVAGLDGEFVGYLHIKDVLTLGDEPQTVIDLALVRPLPEVPESLPVADALSRMRRSNSHLALVTADGGEVVALVAMEDLVDDLVGTMRDGTH
>NZ_CP011883.2|WP_047314176.1|2250865_2252245_-|HlyC/CorC-family-transporter
MNVAVTLGSLVAIGLLIFGNAVFVAAEFSLTALDRSTVEANARGGTRREDRCIRRAHHKLSFQLSGAQLGISIATLATGYLTEPMMTDLPHPALDAIGIPDRATDWITAFLALVIVTSVSMVFGELVPKYLAVARPLRTARAVVGVQLLFSLLLTPAIRLTNWAANCIVRNLGIEPAEELRSARSPQELLSLVRTSARSGALDAATASLVRRSLQFGALTAAELMTPRSKIVALQTDQTVTDLVAVAAESGFSRFPIVDGDLDATVGIVHVKQVFEVPPADRAGTLLTTVAKPVTVVPSTLDGDAVMAQIRADGLQTALVVDEYGGTAGMVTVEDLIEEIVGDVRDEHDDATPDVVAAGNGWQVSGLLRIDEVAAATGYRAPEGPYETIGGLVLRELGHIPAVGETVELTALDTDGLSDASARWQATVVGMDGRRIDLLALTELGSQPGDHHKSSPGRG
>NZ_CP011883.2|WP_054879991.1|2252463_2253900_-|GuaB1-family-IMP-dehydrogenase-related-protein
MRFLDGHRPGFDLTYNDVFIVPNRSEVASRFDVDLSTNDGSGTTIPVVVANMTAVAGRRMAETVARRGGLVILPQDLPIAVVQQTVEFVKSRDLVLDTPVLLTPDDSVSDATALIHKRAHGVAVVASEGRPIGLVSESSCLGVDRFTRVRDVAATDFVTAPVGTDPRKVFDLLEHAPIDVAVLTNADGTLAGVLTRTGAIRTGIYTPATDARGRLRVGAAVGINGDVAGKAQSLAEAGVDVLVVDTAHGYQVKTLEAISRVASLTLGVPLVAGNVVSAEGTRELLGAGATIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECASAARQLDGHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDHDDQPYKESYGMASKRAVVARAAADSPFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHITSGVRSTCTYVGASTLAELHERAVVGVQSAAGFAEGHPLPSGW
>NZ_CP011883.2|WP_054880970.1|2253934_2255386_-|NADP-dependent-phosphogluconate-dehydrogenase
MSSSESKTASAQIGVTGLAVMGSNIARNFARHGYTVALHNRSITKTDALLKEHGAEGKFVRSETIPEFLAALQTPRRVLIMVKAGAPTDAVINELADAMEPGDIIIDGGNSLFTDTIRREKAMRERGLHFVGAGISGGEEGALNGPSIMPGGPAESYTSLGPLLEEISAHVDGVPCCTHIGPDGSGHFVKMVHNGIEYSDMQLIGEAYQLLRDGLGMGALQIADVFTEWNKGDLNSYLVEITAEVLRQTDAKTGKPLVDVIRDEAEQKGTGRWTVQSALDLGVPITGIAEAVFARALSGSVPQRKAAIGLASGKLGDKPADSETFTEDVRQALYASKIVAYAQGFNHIQAGSAEFGWNITPGDLATIWRGGCIIRAKFLNRIKEAFDGDPDLASLIVAPYFRSAVESAIDSWRRVVSTAAQLGIPNPGFSSALSYYDALRTERLPAALTQAQRDFFGAHTYGRIDATGKFHTLWSQDRSEVPV
>NZ_CP011883.2|WP_054879990.1|2255513_2256464_-|M56-family-metallopeptidase
MSALAFTILAVLLVGPTPALVARSTWPLRAPRAAMVLWQAIALAAVLSAFSAGIAIASRVLMPGPDGRPTASIVGAAGRLGWPLWAAYVAAFALTVLVGVRLIVAIVRVAIATRRRRAHHRMVVDLVGVGHDVALAQPCARARDLRVLEVAQPLAYCLPGVRSRVVVSEGTLTTLNDAEVTAILTHERAHLRARHDLVLEAFTAVHAAFPRLVRSSAALGAVRLLVELLADDVAVRAAGRTPLARALVACASGRAPSGALAAGGPTTVLRVRRLSGRGNSAVLSAAAYLAAAAVLVVPTVALAVPWLTELQRLFSV

Crispr_ID: NZ_CP011883_15

• CRISPR_ID: NZ_CP011883_15
• CRISPR_location: 3035013-3035093
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_15

Consensus_repeat	Method
GAGCCGGGCAATGCAGCCCAGCC	CRISPRCasFinder

spacers of NZ_CP011883_15

>15.1|3035036|35|NZ_CP011883|CRISPRCasFinder
CGGCGACGATGCAGACGGCGTAGCCGTCTGAGGAG

CRISPR arrays and Neighbor proteins around NZ_CP011883_15

CRISPR arrays

The CRISPR arrays of NZ_CP011883_15

>merge|NZ_CP011883|15|3035013-3035093|CRISPRCasFinder
GAGCCGGGCAATGCAGCCCAGCCCGGCGACGATGCAGACGGCGTAGCCGTCTGAGGAGGAGCCGGGCAATGCAGCCCAGCC

>NZ_CP011883|15|15|3035013-3035093|CRISPRCasFinder
GAGCCGGGCAATGCAGCCCAGCC	CGGCGACGATGCAGACGGCGTAGCCGTCTGAGGAG
GAGCCGGGCAATGCAGCCCAGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_047314892.1|3040763_3041300_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239516
NZ_CP011883.2|WP_054879626.1|3025808_3026048_-|50S-ribosomal-protein-L31	unknown	unknown	gnl|CDD|234576
NZ_CP011883.2|WP_054879622.1|3031849_3033268_-|diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|273415
NZ_CP011883.2|WP_054880900.1|3023049_3023703_-|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl|CDD|272879
NZ_CP011883.2|WP_054880898.1|3039602_3040073_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054879619.1|3036386_3036686_-|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl|CDD|274228
NZ_CP011883.2|WP_054879627.1|3024640_3025714_-|peptide-chain-release-factor-1	unknown	unknown	gnl|CDD|234801
NZ_CP011883.2|WP_156406786.1|3037458_3038046_+|PE-domain-containing-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_047314893.1|3041430_3041820_+|VOC-family-protein	unknown	unknown	gnl|CDD|319939
NZ_CP011883.2|WP_054880899.1|3030502_3031828_-|homoserine-dehydrogenase	unknown	unknown	gnl|CDD|235783
NZ_CP011883.2|WP_156406784.1|3023699_3024644_-|HemK-family-protein-methyltransferase	unknown	unknown	gnl|CDD|236467
NZ_CP011883.2|WP_156406787.1|3038068_3038713_+|hypothetical-protein	unknown	unknown	gnl|CDD|237537
NZ_CP011883.2|WP_054879623.1|3029423_3030506_-|threonine-synthase	unknown	unknown	gnl|CDD|236013
NZ_CP011883.2|WP_054879618.1|3036700_3036991_-|plasmid-maintenance-system-killer-protein	unknown	unknown	gnl|CDD|226079
NZ_CP011883.2|WP_054879625.1|3026288_3028124_-|transcription-termination-factor-Rho	unknown	unknown	gnl|CDD|237171
NZ_CP011883.2|WP_156406897.1|3040196_3040727_-|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl|CDD|274679
NZ_CP011883.2|WP_156406785.1|3035425_3035782_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_156406896.1|3028390_3029356_-|homoserine-kinase	unknown	unknown	gnl|CDD|223161
NZ_CP011883.2|WP_047315857.1|3033264_3034917_-|arginine--tRNA-ligase	unknown	unknown	gnl|CDD|234964
NZ_CP011883.2|WP_047314894.1|3041816_3042302_-|RrF2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|273242

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054879626.1|3025808_3026048_-|50S-ribosomal-protein-L31	gnl|CDD|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	4.01347e-41
NZ_CP011883.2|WP_054879622.1|3031849_3033268_-|diaminopimelate-decarboxylase	gnl|CDD|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP011883.2|WP_054880900.1|3023049_3023703_-|threonylcarbamoyl-AMP-synthase	gnl|CDD|272879	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family. Has paralogs, but YrdC called a tRNA modification protein. Ref 2 authors say probably heteromultimeric complex. Paralogs may mean its does the final binding to the tRNA. [Protein synthesis, tRNA and rRNA base modification].	2.06086e-85
NZ_CP011883.2|WP_047314892.1|3040763_3041300_-|NUDIX-hydrolase	gnl|CDD|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	9.55973e-34
NZ_CP011883.2|WP_054879619.1|3036386_3036686_-|HigA-family-addiction-module-antidote-protein	gnl|CDD|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	2.29367e-32
NZ_CP011883.2|WP_054879627.1|3024640_3025714_-|peptide-chain-release-factor-1	gnl|CDD|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP011883.2|WP_156406786.1|3037458_3038046_+|PE-domain-containing-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.86018e-26
NZ_CP011883.2|WP_054880899.1|3030502_3031828_-|homoserine-dehydrogenase	gnl|CDD|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP011883.2|WP_156406784.1|3023699_3024644_-|HemK-family-protein-methyltransferase	gnl|CDD|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.90207e-86
NZ_CP011883.2|WP_156406787.1|3038068_3038713_+|hypothetical-protein	gnl|CDD|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00399383
NZ_CP011883.2|WP_054879623.1|3029423_3030506_-|threonine-synthase	gnl|CDD|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_CP011883.2|WP_054879618.1|3036700_3036991_-|plasmid-maintenance-system-killer-protein	gnl|CDD|226079	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only].	1.08829e-31
NZ_CP011883.2|WP_047314893.1|3041430_3041820_+|VOC-family-protein	gnl|CDD|319939	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	3.75265e-65
NZ_CP011883.2|WP_156406897.1|3040196_3040727_-|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl|CDD|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	6.16457e-13
NZ_CP011883.2|WP_054879625.1|3026288_3028124_-|transcription-termination-factor-Rho	gnl|CDD|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
NZ_CP011883.2|WP_156406896.1|3028390_3029356_-|homoserine-kinase	gnl|CDD|223161	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism].	2.17001e-101
NZ_CP011883.2|WP_047315857.1|3033264_3034917_-|arginine--tRNA-ligase	gnl|CDD|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP011883.2|WP_047314894.1|3041816_3042302_-|RrF2-family-transcriptional-regulator	gnl|CDD|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	2.30441e-49

Protein sequences

>NZ_CP011883.2|WP_047315857.1|3033264_3034917_-|arginine--tRNA-ligase
MTPADLAELLKTTATAVLAERGLDAAALPPTVTVERPRNPEHGDYASNLAMQLGKKVGANPRELAGWLAEALVQADGIADVEVAGPGFINMRLEASAQAKVVNTVIDAGNSFGHSEALAGHQINLEFVSANPTGPIHIGGTRWAAVGDALGRLLTTQGADVVREYYFNDHGAQIDRFTNSLIAAAKGEPTPADGYAGTYITDIAAQVMQQAPDALSLPEPEMHETVREIGVDLMFTHIKKSLHEFGTDFDVYTHEDSMHTSGRVDQAIARLRETGNIYEKDGATWLRTSAFGDDKDRVVIKSDGKPAYIAGDLAYYLDKRQRGFDLCIYMLGADHHGYIARLKAAAAAFGDDPATVEVLIGQMVNLVRDGQPVRMSKRAGTVITLDDLVEAIGVDAARYSLIRSSVDTAIDIDLELWSSASNENPVYYVQYAHARLSALARNAAELGLIPDTGNLELLSHDKEGALLRTVGEFPRVLKTAASLREPHRVCRYLEDLAGDYHRFYDSCRVLPQGDEQPTDLHTARLALCQATRQVIANGLAILGVSAPERM
>NZ_CP011883.2|WP_054879622.1|3031849_3033268_-|diaminopimelate-decarboxylase
MNAHPAGPRHAEETRHTATLSRRQAPDDLLQLASNVWPRNTTRDETGVACIAGSKLTDLAQEYGTPLFVIDEDDFRARCREIAAAFGGGENVHYAAKAFLCTEIARWIDEEGLSLDVCSGGELAVALHAAFPPERITLHGNNKSVAELTDAVKAGVGHIVLDSTTEIERLDAIAGEAGIIQDVLVRLTVGVEAHTHEFIATAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVAGFELAAHRVIGLLREIVGEFGPGKTAQLSTVDLGGGLGISYLPDDDPPPIAELAAKLSAIVSNESAAVGLPAPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATANRRYVSVDGGMSDNIRTALYDAQYDVRLVSRTSDAAAIPARIVGKHCESGDIVVRDTWVPGDLQPGDLVGVAATGAYCYSLSSRYNMIGRPAVVAVRAGRARLILRRETVDDLLSLEVR
>NZ_CP011883.2|WP_054880899.1|3030502_3031828_-|homoserine-dehydrogenase
MSGDEKPVGVAVLGLGNVGSEVVRIIEDSADDLAARIGAPLVLRGIGVRRVAADRDVPVGLLTDNIEELVSREDVDIVVEVMGPVEPSRKAILSALEHGKSVVTANKALLATSTGELAQAAESAHVDLYFEAAVAGAIPVIRPLTQSLAGDTVLRVAGIVNGTTNYILSAMDSTGADYDSALADASALGYAEADPTADVEGYDAAAKAAILASIAFHTRVTADDVYREGITKITPADFESAKALGCTIKLLSICERITADDGQQRVSARVYPALVPMSHPLATVSGAFNAVVVEAEAAGRLMFYGQGAGGAPTASAVTGDLVMAARNRVLGSRGPKESKYAQLPVAPMGFISTRYYVSMNVADKPGVLSAVAAEFAKREVSIAEVRQEGVVDDGGRRVGARIVVVTHGATDAALSETVDALADLDVVQGVTSALRLEGTSL
>NZ_CP011883.2|WP_054879623.1|3029423_3030506_-|threonine-synthase
MSGQQTTTHQPWPGVIAAYRDRLPVGDDWTPVTLLEGGTPLIAAPRLSEQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALARGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPMISLVNSVNPVRIEGQKTAAFEIVDALGAAPHVHALPVGNAGNITAYWKGYTEYHADGLIDRLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVEAQQQSKGRFLAATDEEILAAYHLVARAEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTALKDMPSVSPVPVDTAAVVEQLGLA
>NZ_CP011883.2|WP_156406896.1|3028390_3029356_-|homoserine-kinase
MLVTRMLPAGLVASAVVAASSANLGPGFDSVGLALSLCDEIVVETTDSGLVVVVDGEGADQVPTGSEHLVVRAVRRGLQAVGVSAAGLVVRCRNAIPHSRGLGSSAAAVVGGLAAVNGLVAQIDSTPSDSAPLSETQLIQLASEFEGHPDNAAAAVLGGAVVSWIDRSCDRLNYCAVPLRLHPDIQLFAAIPEERSSTAETRVLLPVQVSHDDARFNVSRAALLVVALTERPDLLMAATEDVLHQPQRASAMPASAEYLRLLRRHNVAATLSGAGPSLIALSTQSELPREAAEYGAANGFIITKMTAGEGVRWRPGVTVPG
>NZ_CP011883.2|WP_054879625.1|3026288_3028124_-|transcription-termination-factor-Rho
MTETDLITAGENTDSTELSNAVTTDTSDVKTTAVTASLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEESRGQANGTSVNDGPSRDHGGSETAVSTEAPAAQEEQNDSTVEAAPRRERRGASRETGAAARTGTAEGTESDRRGTAVDDTDTLQGSQSDTKTDERGPDAGSDQGVDQQGSGSQPRGDEDGEGRQGRRGRRFRDRDRRRRGERSGDGAEAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD
>NZ_CP011883.2|WP_054879626.1|3025808_3026048_-|50S-ribosomal-protein-L31
MKADIHPAYEETTVVCGCGNTFQTRSTKPGGRIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGRRKAADKAESADK
>NZ_CP011883.2|WP_054879627.1|3024640_3025714_-|peptide-chain-release-factor-1
MTQPVQTIDVLLAEHAELEHALADPELHSKPDEARKAGRRFARLAPIVATHRKLVAARDDLATARELAADDESFADEVAELESRVVELDTQLTDMLAPRDPHDADDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWTVTVLDETTSDLGGYKDATMAIGSKGDSADGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGEVQIDESDLRIDVYRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKTRALQVLAARLQAMAEEQALADASADRASQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLDQVLDGDLDALFDALSAADKQARLQQA
>NZ_CP011883.2|WP_156406784.1|3023699_3024644_-|HemK-family-protein-methyltransferase
MTDRPARRCGSEGMRRRRIIQSELRRAIDSAATLLAEAGIGSARCDAEQLAAHLAGTDRGRLALLDTPGDEFFGRYRDAVAARARRVPLQHLIGTVSFGPVVLHVGPGVFIPRPETEAILAWAMAQRLPARPVIVDSCTGSGALAVALAQHRPAARVIGIDDSDAALDYARRNAVGTAVELVRADVTTPGLLPELDGRVDLFVANPPYVPDDPVSLCILEPEVTQYDPRHAVFGGPDGMALTADIVGLAGRWLRPGGLFAVEHDDSTSVPTFELVCRTGLFDDVLAHHDLAGRPRFVTARRCGHHPRTAEKCRA
>NZ_CP011883.2|WP_054880900.1|3023049_3023703_-|threonylcarbamoyl-AMP-synthase
MTEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDSAAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARELIRAFWPGALSLVVVQAPSLNWDLGDARGTVMLRMPLHPVAIELLREVGPMAVSSANVSGQPAAVDADGARGQLGELVGVYLDAGPSAQQAASTIVDLTGETPRILRPGPVSTARIAEVLGVAPASLTA
>NZ_CP011883.2|WP_156406785.1|3035425_3035782_+|hypothetical-protein
MSWAHIFTTHEFWTGGVIVGGLGSIGTYFTTHASDKRKFKQEDKVLDRRETREDKLREEENLYAAASEFTEVCTDILTNTIDTKRAFNAIRDMFYNRAGRADPNVENKRRPPARATWL
>NZ_CP011883.2|WP_054879619.1|3036386_3036686_-|HigA-family-addiction-module-antidote-protein
MADFAPTHPGEILAEEFLVPMRITPYRLAKEIGVPQTRLSEIIAGRRAITADTGLRLSRALGLSDMFWINLQARYDADMVRIDKSAELEHIRPLAACAG
>NZ_CP011883.2|WP_054879618.1|3036700_3036991_-|plasmid-maintenance-system-killer-protein
MIRSFSDSDTQKIWELRCPKGISKDLAKAVRRKMQILDAAENINDLRVPPGNRLEKLTAKGGREGQHSIRINDQYRICFKWSNGGADNVELVDYHD
>NZ_CP011883.2|WP_156406786.1|3037458_3038046_+|PE-domain-containing-protein
MSFVTAVPEAVSVAANDLASIGSAINSANAAAALSTTGMMAAAADEVSAGIAALFGAYAQGYQTLSNQAAAFHEQFVQVLTAGAGSYAAAEAANASPLQILEQGVLDVVNAPTQVLLGRPIIGNGTNGTTPGQPGGAGGLLFGNGGNGAAGAVGQPGGAGGAAGLIGKGGMGGAGGAGAAGGTGGAGGWLYGNGG
>NZ_CP011883.2|WP_156406787.1|3038068_3038713_+|hypothetical-protein
MAGINGGIGAVGGNGGNAGLIGTGGAGGTGGAGLAGATGVNPTAGPAASTGTSPADVVGPDSQTGSNGGTGATGVGLTPTGGTGGEGASATSTSGTSVTATGGAGGSPGASIAGGAGAAGGAGGNATVTDFNGNAIGGNGANGTMGVAPGSSGGDGGDGGTATTVRGVGATQGGSGGSGGNGATGASGGNGSAGGPAARAAPAERCSATAATAA
>NZ_CP011883.2|WP_054880898.1|3039602_3040073_-|hypothetical-protein
MAVVTFVAPVAVVHAAMPSWNGKYSLVRYAVNKTGTSAAASQAEPTFSADYVFVTSCSAGRCLATATDGPTPKNPTLPTPSRYRWDGTRWVEHFDFQWDCYMGEGVPKVWAPAKSWAFYTPQPDGSLRGTWHTDIDSGPCRGSVEMPVAAFSVGPR
>NZ_CP011883.2|WP_156406897.1|3040196_3040727_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTQRNLDGYGAPTIEWARVKAVLDGQLTQAPGTGGPQRHTVWLTTINPDGSPHVMPLGVVHRGGSWYFTSGPVTRKSRNLARDPRCVVSVATDPFDLVIEGSAERVTDAGELGSVAEAFVSAGWPAEVAGDALTAQYSAPSAGPAPWHAYRLKPSTVFALGTSEPFGATKFQLDRS
>NZ_CP011883.2|WP_047314892.1|3040763_3041300_-|NUDIX-hydrolase
MPIIEYVASREIYRTPWMVLRQDDIRLPDGSPSIYGVVDKPTYALVMPYDGHRFQLVEQFRYPVGARRWEFPQGTAPDLTDLEPAELAERELREETGLRATSFEALGQLDTAPGMTSQRGWVFLATGISEGAAEREHEEQDMRSAWFSREDFEQMIRSGVIVDAQSIAAYGLFLLSGR
>NZ_CP011883.2|WP_047314893.1|3041430_3041820_+|VOC-family-protein
MTISFNHTIVASRDKQESAEFLTELFGLPRPTPSGRFMVVALEHGVNLDYADVQEGEEIPRQHYAFLVSDQEFDAIYGKIESRGLPHWADPGAKRPGEINHNDGGRGVYFSDPSGHAMEILTRPYGSGG
>NZ_CP011883.2|WP_047314894.1|3041816_3042302_-|RrF2-family-transcriptional-regulator
MRMSAKAEYAVRAMIQLATVANGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGREGGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYSGPTAALTDVWRALRASMRSVLEETSLADVASGVLPKHVAKLADDYRDQESTRHGSPRGGD

Crispr_ID: NZ_CP011883_16

• CRISPR_ID: NZ_CP011883_16
• CRISPR_location: 3162207-3162288
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_16

Consensus_repeat	Method
AGCCCTGCGACAATGCGGGCCGCC	CRISPRCasFinder

spacers of NZ_CP011883_16

>16.1|3162231|34|NZ_CP011883|CRISPRCasFinder
CAGCGGCCCGAGGAGGAACAGGGCAATCGAATTC

CRISPR arrays and Neighbor proteins around NZ_CP011883_16

CRISPR arrays

The CRISPR arrays of NZ_CP011883_16

>merge|NZ_CP011883|16|3162207-3162288|CRISPRCasFinder
AGCCCTGCGACAATGCGGGCCGCCCAGCGGCCCGAGGAGGAACAGGGCAATCGAATTCAGCCCTGCGACAATGCGGGCCGCC

>NZ_CP011883|16|16|3162207-3162288|CRISPRCasFinder
AGCCCTGCGACAATGCGGGCCGCC	CAGCGGCCCGAGGAGGAACAGGGCAATCGAATTC
AGCCCTGCGACAATGCGGGCCGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_054879564.1|3165413_3166829_-|acyltransferase	unknown	unknown	gnl|CDD|223951
NZ_CP011883.2|WP_054879563.1|3166908_3173310_-|type-I-polyketide-synthase	unknown	unknown	gnl|CDD|225858
NZ_CP011883.2|WP_054879560.1|3179075_3180410_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP011883.2|WP_047315021.1|3178390_3178717_-|ferredoxin-family-protein	unknown	unknown	gnl|CDD|224069
NZ_CP011883.2|WP_054879561.1|3174851_3177227_-|amino-acid-permease	unknown	unknown	gnl|CDD|223605
NZ_CP011883.2|WP_156406795.1|3152691_3154323_+|PucR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225306
NZ_CP011883.2|WP_054879567.1|3161243_3161543_+|PE-family-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_047314966.1|3156275_3156968_+|GAP-family-protein	unknown	unknown	gnl|CDD|378566
NZ_CP011883.2|WP_054879568.1|3160262_3160853_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_156406796.1|3180406_3180550_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054879569.1|3159198_3159789_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_054879566.1|3161590_3162178_+|PPE-family-protein	unknown	unknown	gnl|CDD|366325
NZ_CP011883.2|WP_156166359.1|3180570_3180993_+|hypothetical-protein	unknown	unknown	gnl|CDD|235536
NZ_CP011883.2|WP_047314977.1|3177251_3178337_-|succinyldiaminopimelate-transaminase	unknown	unknown	gnl|CDD|236119
NZ_CP011883.2|WP_054880890.1|3173610_3174825_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223730
NZ_CP011883.2|WP_047315017.1|3150976_3152608_-|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|273517
NZ_CP011883.2|WP_047314965.1|3154503_3156243_+|AMP-binding-protein	unknown	unknown	gnl|CDD|235624
NZ_CP011883.2|WP_047314967.1|3157127_3158213_+|PE-PPE-domain-containing-protein	unknown	unknown	gnl|CDD|369775
NZ_CP011883.2|WP_054879570.1|3158851_3159151_+|PE-family-protein	unknown	unknown	gnl|CDD|376422
NZ_CP011883.2|WP_054879565.1|3162314_3165329_-|MMPL-family-transporter	unknown	unknown	gnl|CDD|225272

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_054879564.1|3165413_3166829_-|acyltransferase	gnl|CDD|223951	COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	3.70329e-26
NZ_CP011883.2|WP_054879563.1|3166908_3173310_-|type-I-polyketide-synthase	gnl|CDD|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP011883.2|WP_054879560.1|3179075_3180410_+|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.55152e-98
NZ_CP011883.2|WP_047315021.1|3178390_3178717_-|ferredoxin-family-protein	gnl|CDD|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	1.4358e-11
NZ_CP011883.2|WP_054879561.1|3174851_3177227_-|amino-acid-permease	gnl|CDD|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.33719e-26
NZ_CP011883.2|WP_156406795.1|3152691_3154323_+|PucR-family-transcriptional-regulator	gnl|CDD|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	4.32756e-26
NZ_CP011883.2|WP_054879567.1|3161243_3161543_+|PE-family-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	4.41796e-08
NZ_CP011883.2|WP_047314966.1|3156275_3156968_+|GAP-family-protein	gnl|CDD|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	1.25304e-45
NZ_CP011883.2|WP_054879568.1|3160262_3160853_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	3.37418e-24
NZ_CP011883.2|WP_054879569.1|3159198_3159789_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.31583e-26
NZ_CP011883.2|WP_054879566.1|3161590_3162178_+|PPE-family-protein	gnl|CDD|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	5.88894e-25
NZ_CP011883.2|WP_156166359.1|3180570_3180993_+|hypothetical-protein	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	3.10948e-17
NZ_CP011883.2|WP_047314977.1|3177251_3178337_-|succinyldiaminopimelate-transaminase	gnl|CDD|236119	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed.	0
NZ_CP011883.2|WP_054880890.1|3173610_3174825_-|alpha/beta-hydrolase	gnl|CDD|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.33231e-38
NZ_CP011883.2|WP_047315017.1|3150976_3152608_-|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl|CDD|273517	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate. [Energy metabolism, Amino acids and amines].	0
NZ_CP011883.2|WP_047314965.1|3154503_3156243_+|AMP-binding-protein	gnl|CDD|235624	PRK05850, PRK05850, acyl-CoA synthetase; Validated.	0
NZ_CP011883.2|WP_047314967.1|3157127_3158213_+|PE-PPE-domain-containing-protein	gnl|CDD|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	6.51269e-74
NZ_CP011883.2|WP_054879570.1|3158851_3159151_+|PE-family-protein	gnl|CDD|376422	pfam00934, PE, PE family. This family named after a PE motif near to the amino terminus of the domain. The PE family of proteins all contain an amino-terminal region of about 110 amino acids. The carboxyl terminus of this family are variable and fall into several classes. The largest class of PE proteins is the highly repetitive PGRS class which have a high glycine content. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	4.90569e-10
NZ_CP011883.2|WP_054879565.1|3162314_3165329_-|MMPL-family-transporter	gnl|CDD|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	0

Protein sequences

>NZ_CP011883.2|WP_054879566.1|3161590_3162178_+|PPE-family-protein
MPDLRAETITNYTRVGPGPASMQRAADEWGSLSEELLDFKSSFNQMLVSLTEEWSGPVAMQMIEATKPFLTWLDDLGQQLVETQNQIERIIRGYWRAHRDVVPPTAIRGNLTRRAQLLNNPLGVNTYGITLLDQQYQQFCTHNGQVWNRYRARLADASSRLAPWPSPPSITNNTESVQPVRTDTSVSGSSASSSG
>NZ_CP011883.2|WP_054879567.1|3161243_3161543_+|PE-family-protein
MSFLTTAPPVLTEAAAYVRKICDEAATVDAGAAPTITAVVAPAPDPDSQKAAAHLVRYAQEFRETLAEAAVILAEFASALDAAAAQYATAEADSAKTMG
>NZ_CP011883.2|WP_054879568.1|3160262_3160853_+|PPE-family-protein
MPNLPPETIANYLRVGPGPTSMGRAACQWRVLRAEIIDLESRFNHMLLSLTAQWSGPIATQVIEAAKALLRWLNDLSVKLFEIKEQIFRIICAYLNAYHTVVPTARINANRTRRAQLLVNDPLGQNAHEIAQLDEQYLRFWAHNGRVWERYRSELSDALSQITPFPLPPPIANNTGLVQPVRTDTSVFDSSASSSG
>NZ_CP011883.2|WP_054879569.1|3159198_3159789_+|PPE-family-protein
MPYLSPEIIADYMRVSPNVVSMGRASRQWRLLREEIMDLESRFNRMLVGLTAQWSGPVGLQMIEAAKPFLRWLNDLSVKLFETKEQIARIIGAYAHVYHTVVPTARINANRTRRAQLLVNDPLGQNAAEIAQLDEQYLRFWAHNGRAWERYRSELSDALSQITPFPLPPPIANNTESVQPIRTDTSVSDSSASSSG
>NZ_CP011883.2|WP_054879570.1|3158851_3159151_+|PE-family-protein
MSFLSTAPEALNDAATETRKIRAEAVTVDAAAAPTITAVVAPAPDPDSQRAAEHLVRHAQQYSETIAAAAAILEEFALALDAGADQYTATEADNAKTMS
>NZ_CP011883.2|WP_047314967.1|3157127_3158213_+|PE-PPE-domain-containing-protein
MKRLLAAALAALTVGTAGGFGPAVASAEPGTPWEPWLPPSPVPVREDSPAKVVYALGGARPPTFDWDYYTIRAGEGFFPDIKRKLIDYPAGAPFRYVPTFLVPGPRDEVTIGEAIAVATKNLNQAIHQGTEPGAVVGLSQGSLALDTEQARLATDPTAPPPDQLTFNTFGDPSGYQGFGKSVLASIFRPGDYIPLIDYTMPPHVDSQYDSNRIVAAYDGLSDFPDRADNLLAQLNCAAGAAISHTPSAFLNPGDVPPQNIKTTVNSRGAKTTTYFIPLNHLPLTLPLRYLGWSDALVDQIDAVLQPKIDAAYAYNDNPFDKPISVDPVNGMDPITSIDPGLRDSILDAFAQVRSILPPPPG
>NZ_CP011883.2|WP_047314966.1|3156275_3156968_+|GAP-family-protein
MWITILVMAVAVSLEPFRIGMTVLMLNRPRPMLQLLAFLCGGFAMGMTVGFVVLFVFRRRLMASTQFTLPKVQILIGVLALLVAAVLAVKVAVNREQPAESPVDSASGPPKLSKWAPRPLARLLNGGSLWVAGVAGLGIALPSVDYLAALAVILASDAAATAQVGALLMFNVVAFALIEIPLAAYLLAPDATRAWMAALNDWIRSRRRLEVATLLAGVGCVLLAVGTAGL
>NZ_CP011883.2|WP_047314965.1|3154503_3156243_+|AMP-binding-protein
MHNSSVLSLLRERAGLQPDDVAFSFTDYEQDWAGVRESLTWAQLYQRTLNVAHELRRHGSMGDRAVILAPQGLEYIVAFLGAMQAGFIAVPLSVPQAGSHDERVGAVLADTSPSVVLTTSAVAEAVADYVRQPNTDAVPTIIEVDSPNLDAENPSSIRLTGAPSTAYLQYTSGSTRLPAGVMITHRNLMVNFQQLMADYFAPTNGAAPPDLTIVSWLPFYHDMGLVLGVVAPILGGWRGELTSPIAFLQRPARWIQALATSSHPFSGGPNFAFELAARRTSDADMAGLDLGACQGILSGSERVHPATLNRFSDRFAPFNFRDDMLLPSYGLAEGTVYAASRPKGGSPEVVYFEPEKLSEGTVERCDARSGAPLLSYGTPKSPIVRIVDSETCLECPAGTVGEIWLHGDNVAEGYWHKPEETQRTFGGTVANPSPGTPEGPWLRTGDLGFISEDELFIVGRMKDLLIVYGRNHYPEDIESTVQQITGGRVAAISVPVDETEKLVTIIEVKKRGDSDEEAMQKLAAVKNDVTAAISKAHGLNVADLVLVPPGSIPTTTSGKIRRAACVEQYRRQQFSRLDG
>NZ_CP011883.2|WP_156406795.1|3152691_3154323_+|PucR-family-transcriptional-regulator
MRVAGVGLGQLLLALDATMVSLVDAPRGLDLPVGSAALIDSDDVRLGLAAATGAADVFFLLGIPQQEQAEALRWLHQQARRAPVAIFVKEPSNTLVSTAVAAGSAVVAVEPRARWERLYQLVNHVFEHHQPSLGDRGDPADDSGTDLFGLAQSLADRIHGMVSIEDAQSHVLAYSASNDEADELRRMSILGRAGPPEHLEWIGQWGIFDALRAGGEVVRVGERPELGLRPRLAIGIHRPPIAPRRPPVFAGAIWVQQGAQPLADDAEEILRGAAVLAARIMSRLAATPSTHARRLQQLLGLGDMEVSPADTAAVIARELGLAAEGNAALIGFDGDAEHTGNRHARPADVLALSASAFRRDAQVASQGSRIYVLLPDTTTTRSVTSWVRGAIGALQTELGVALRAAIAAPIAGLSGVAAARVEVDRVLDSAERHPVSIDQVTSVAEARTTVLLDEIITLIGTDERLVDPRVHDLRSRDPMLTQTLRAYLDSFGDIAAAAQRLHVHPNTVRYRVRRIEQLLSTSLADPDVRLLFSLGLRVTERSA
>NZ_CP011883.2|WP_047315017.1|3150976_3152608_-|L-glutamate-gamma-semialdehyde-dehydrogenase
MDAITQVPTPVNEPVHDYAPQSQERTRLRTELAALADHPIELPHVIAGKHRMGDGEPIDVVQPHRHAAKLGTLTNATHADAAAAIEAAMVAKNAWAAMPFDERAAVFLRAAELLAGPWRERIAAATMLGQSKSVYQAEIDAPCELIDFWRFNVAFARQILAQQPISGPGEWNRSDYRPLDGFVYAITPFNFTSIAGNLPTAPALMGNTVVWKPSITQTLSAYLLMQLLEAAGLPPGVINLVTGDGFAVSDVALADPRLAGIHFTGSTATFQHLWQQVGANIGRYHSYPRLVGETGGKDFVVAHASARPDVLCAALIRGAFDYQGQKCSAASRAFIAHSVWQRMGDEFLGTAAELHYGDVTDLTNYGGALIDRRAFAKNVTAIERAKGTAAVTIAVGGEYDDSVGYFVRPTVLLSDDPTDESFATEYFGPLLSVHVYPDDQYERILDLIDTGSRYALTGAVIGDDRQAVLTAQHRLRFAAGNFYVNDKPTGAVVGRQPFGGSRGSGTNDKAGSPLNLLRWTSARTIKETFVAATECSYPHMASD
>NZ_CP011883.2|WP_054879565.1|3162314_3165329_-|MMPL-family-transporter
MIGCWALLALVLPMTVPSLTEMTQRHPVAILPADAPSSVAAKKISQAFHEAGSENVLIVLLTDDKGLGPADETVYRTLVDRLRRDTKSVVMLQDFLSTPPLHELLASKDGKAWILPVGLAGELGTPTSYQAYVHVAAIVKQALEGAAGSSLQANLTGPASTVADLTDAGARDRTSIELAIAVLLLIILIIIYRNPITMLLPLITIGASLLTAQAVVSGVSVLTGLAVSNQMIVLLSAMIAGAGTDYAVFLISRYHDYVRLGSGSAQDAGRAVRQALTSLGKVIAASAATVGITFLGMGFTKIGVFSTVGPALAIGIAVAFLAAVTLMPAILVLAGPRGWVAPRRDRAGAFWRRTGVRIVRRPVAYLSASMVILIALALCASLVRFNYDDRKQLPASDQSSVGYAALERHFPVNQTIPEYLLIQSPHDLRTPRALADMAELAQRVSQIPGIALVRGVTRPTGKPLEETSATYQAGMVGKQLGSASHMISESTGDLNRLASGAGLLADKLGDVRTQVGQAVAGINGLLDSLASVQKMFGGGKTLGEVDTAGKLVSSMRALGNTLGINFSASMNNINWVGAVVIALDASMLCDTNPLCADARAQFHKLLTASEDGTLDNIANLWKQLGSTQSAQTVGATINGLEKTLTAVNRSLRSLGLDNPSAMRSKLIGLQNGTNDLASAGRQIADGVAVLVDQTKTMGTSLGRASAFLTEMGQDASQPSMAGFNMPPQLLNTEDFKKLAKTFISPDGHSVRYFIQTDLNPFSSAAMDQVNTILNVAKGAQPNTTLSDASIYLSGYTVTLRDTRDYYDRDLRLIVIVTIIVVLLILMALLRSIVAPLYLVGSVIVSYLSALGLGVLVFQVLLRQQLHWSVPGLAFVVLVAVGADYNMLLASRLRDESSHGVRASVIRTVRSTGGVITAAGLIFAASMFGLLFASIGTVVQAGFVLGSGILLDTFIVRTITVPAVAALLGRASWWPARPWQQGAADDDSATTKTVFDAVTDASPES
>NZ_CP011883.2|WP_054879564.1|3165413_3166829_-|acyltransferase
MRVGPLTLGTLLDWAPRAGKTISWQPTPATCEKVSQAPVSSVPVAYMQAQHIRGYVEQKAKGLDYSRLMIVSCDQPGQCDIRAVNYIVNAHLRRHDTYRSWFEYTDDGEIIRRTLSDPADIEFVPVEHGELSLAQIRELAVSTPDPLEWGCFQFGVIQAEEHFTFYASIDHVHVDAMIVGVTLMEFHMMYSALVSGAGPLELPEAGSYDEFCSRQHQFTSMLTAESPQIRSWTQFAEPNDGSFPDFPLPLGDPLQPTEADIVTVTMLNEQQTDRFEAACTAAGARFVGGVLACCGLAEYELTGADTYYGLTPRDTRRTPTDMLTQGWFTGLVPITVPIAGSSFGDAARAAQSSFDTDVDLAEVPYDRVVELAPTVHKPRPNFPVINFLDAGTAPLSVLLTAGLDGLNIGVYSDGRYSYQMSIYVIRVEQETAVAVMFPDNPEAQESVARYLETLKSVFERVAESGHWRNVA
>NZ_CP011883.2|WP_054879563.1|3166908_3173310_-|type-I-polyketide-synthase
MRSANVTPVAVIGMACRLPGGIDSPQRLWEALLRGDDLVTEIPKERWDADLYYDPEPGVPGRSVSRWGAFLDDVGGFDCDFFGMTEREATAIDPQHRLLLETSWDAIEHAGLDPATLAGSQTGVFIGLTHGDYELLSADCGAAEGPYGFTATSNSFASGRVAYTLGLHGPAVTVDTACSSGLTAIHQACGSLDGGESDLALAGGVAVTLEPRKSVSGSLQGMLSPTGRCHAFDVAADGFVSGEGCVVLLLKRLPDAERDGDRILAVLRGTAANQDGRTPNIAAPSEQAQVAVYRKALAVAGVDPATVGLVEAHGTGTQVGDPIEFASLAAVYGTAGRCALASVKTNFGHMQSTSGPLGMMKAILALQHGVVPKNLYFTRLPDQLAEITTELFVPQDSTTWPVDGEQPRRAAVSSYGISGTNVHAILEEAPAASGDSAKESPAAAKGDGPLLFAVSATSAEQLHATAARLADWVDEHGSRTKRAGLWDLGYTLSRRRGYRPVRTMVPASSVAELSRGLREIAGSEIPYQPAVGQDDRGPVWVFSGQGSQWAGMGAELLAKEPVFAATIAAMEPVIAEESGFSVTEALTAAEKVTGINRVQPTIFAIQVALAAAMKSYGVYPGAVIGHSLGEAAAAVVAGALSFEDGLRVICRRSRLMSRVAGSGAMASVELPGQQVLSELSIRGLSDVVLAVVASPTSTVVGGDTQAIRDLVAAWQEQDVMAREVAVDVASHTPQVEPILDDLVEALADLKPTEPEIPYYSATLWNPRERPSFTGEYWAENLRYTVRFAAAVQAALKDGFRVFGELAPHPLLTYAIEQNAASLDMPISALAAMRREQELPFGLRGFVADVHSAGALVDFSVQYPDGCLVDAPLPTWTHRELMLSRESADHPAHGAAVQAVHPLLGAHVHLFEEPERHVWQGGVGTEAHPWLGDHQIHNVAALPGAAYCEMALAAARATLGEASEVRDIKFEQTLLLDDETMASSAATVSAPGVLEFAVETHEEGERVRRASAVLHALEAGADLQQPPAHNIDALIASHPSRMEGADLRTAFDAVGIQYGPAFSGLAAVHTVDGTNVEVATVLAEVALPGAIRSQQSAYTSHPALLDACFQSVIVAPEVQKAGAGGLLLPVGVRRLRNYHSMRNAQYCLTRVTASRAGECEVDLEVLDQSGTVLLLVEGLRLAGGASEHEHANRVLDERLFTVEWEPRELPEVTQRERGSWLVLGASDPATLEDPLAKQLGDALNADGGYCTAVPLPLGQIDTAQLRSLLSGDGVSPADGHGALKGLTGVVVVTAPPAAAAGAGAESPALRRGRDYVSHIVTIAREISELPGERPRLFVVTRNAASIKTGDLANLEQAGLRGLMRVIDSEHPYLSATQIDVDGTNHATIATHVARQLHSGSDEDETGWRDGEWYTARLRPGPVSQAERRTAVVQHERDGMRLEIRTPGDLESLEFVAFDRVPPGPGEIEVAVTASTINFADVLVAFGRYPTFEGYRQLLGIDFAGVVSAVGPGVTEHKVGDRVGGMSRNGCWTTFVICDARHAVTLPPEVPLEEAAAVPTVAATAWYGLHDLARISSTDKVLIHSGTGGVGQAAIAIARAAGCEIFATAGSPQRRQLLRDMGIEHVYDSRSLEFAEQIRRDTKGYGVDVVLNSLPGAAQRAGIELLAFGGRFVEIGKRDIYGDTRLGLFPFRRNLSLYAVDLALLTHTHPETVRRLLTTVYQRTAEGVLPVPQTTHYPIHDAAGAVRLVAGARHTGKVLLDVPHTGSSVAVVPPEQVRAFRADGAYIVTGGLTGLGLFLGTEMAAAGCGRVVLNSRSAPNPQAQQTIERLRAKGADIQVECGDIAEPGVADRLVAVATQSGLPVRGVLHAAGVVEDATLTNVTDELIDRCWAPKVYGAWNLHVALKEVALQEGKAAQPLDWFCSFSTAAALVGSPGQGAYAAANSWLDGFSHWRRAQGLPSTAIAWGAWGEIGLATALAEMAGAAIAPAEGARVFQTLLCYSRPYSCYAPIMGTPWLTSFAQRSRFAEAFQSISQGQKDKSKFLAELKVLPRDEWPSMIRRLVSEQISLLLRRTIDPDRPLSDYGLDSLGNLELRTRIETETGVRISPTKITTIRGLAEHLCEELAAMEAESPAS
>NZ_CP011883.2|WP_054880890.1|3173610_3174825_-|alpha/beta-hydrolase
MLGFAVTANGYRPLTRHGYGSAYAFGYGLLASELPAQVFGVQLAALTAVSRRLPVRIRRFSWLVSALSWLGLLGLRRIGHRANEPLTAALDAGLGPGRRTDVGDLWTPPAPGGATAKKPGVARMLRIYRDYAHDADVSYGQCGSRNHLDIWRRPDLDRGGRAPVLLQVPGGAWMVGNKRGQAHPLMSHLAELGWVCVAINYRLSPRSTWPDQIVDVKRAIAWTKEHIASYGGDPDWIAITGGSAGGHLSSLAALTPNDPRFQPGFEKADTRVQAAVPFYGVYDFTGPINSMHPMMLPLVQKYVFKCKRSDHPHDFRVASPIAHIGQDAPAFFVLHGSNDSLVPVEQARSFTARLREVSRQPVVYAELPCAQHAFDIFGSARAAHAAVAVEQFLAEIYASRQAVA
>NZ_CP011883.2|WP_054879561.1|3174851_3177227_-|amino-acid-permease
MVVTSSAGSSAGKLRIPLSFGDIAKRVLLGKPLITEELRSEKLSNQVALGALSPDAISSTAYGPEQILIELLPHAGLAAFVLLLPVTGVILLILVLVAASYRQVVMAYTRAGGSYIVARENFGPRVAQVAAAALLIDYVVTVAVQSAAGTVAVVSAIPVLGPYSLEITVGVVLLICYANLRGLRDAGMPFAVATYAFIFMIALTIMVGVIREIVGELPTYDPHQLAGTVPVQQGSGLVMGATILTLLRAFANGGSSLTGVEAISNTVDVFRKPQGPNACRVLTVMAAVLGFLLAGVAYLAFVTHATPYVDEYPSVLSQVARAVFGNGVIGTILFILVQAASAAILFTGANTSFNGFPALASFVAEDRFLPRQLMKRGHRLVFSNGIIALTALSVALLVTTGGSVNALVPFYAIGVFTGFSMAGYGMTKHHLTHREPGWRHRLAINLSAGILSTIVVGIFAVAKFTEGAWLVVVVFPVLVFVLMRLNREYRAEAAILETFRTDRPELVKYARHRVFVLVNSVDLAVIEALRYGKGLRADDLIAVHFMVDETYAAQLRKRWDHYELDTRLRVVDCPDRRINRAAQLLVAKARDEHPDTNVTVLLPRRTYAPLLGRLLHDRTADKIARAISLIPDAAATIVPYDVQSRIQEAYPERFEQRVARELGKVEAWVSQGEDRDIDAYEHPAPAERPSSVVNVAGLVPGQRATVEGRVRQVEDISQRRRTLRWIVVGDSTGEISVTFHPGRGGADIQPGQLLRITGKARQSGNRPISMIDPAYHVMEEPVENRQSGETR
>NZ_CP011883.2|WP_047314977.1|3177251_3178337_-|succinyldiaminopimelate-transaminase
MSASLPVFPWDTLADAKAVAATHPDGIVDLSVGTPVDPVAPLIQAALAAASSAAGYPATAGTARLRESAVAALDRRYGITGLTETAVLPVIGTKELIAWLPTLLGLRAGDVVVVPELAYPTYDVGARLAGAQVLRADSLTQLGPQSPALLYLNSPSNPTGRVLGVDHLRKVVGWARNRGVVVVSDECYLGLGWDAEPLSVLHPLVCDGNHAGLLAVHSLSKSSSLAGYRAGFVAGDPGLVAELLAVRKHAGMMVPTPVQAAMVAALEDDAHEHEQRDRYARRRDALLPAVASAGFTVDHSEAGLYLWASRGEPCRDSVVWFAARGILVAPGEFYGTGGCQHVRVALTASDERIAAAVARLS
>NZ_CP011883.2|WP_047315021.1|3178390_3178717_-|ferredoxin-family-protein
MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDVPEQWSQYTQINADFFVELGSPGGAAKVGMTENDPQVVKDLAPQGEGN
>NZ_CP011883.2|WP_054879560.1|3179075_3180410_+|MATE-family-efflux-transporter
MGEQGSCTLPGRRGVAPRRLFGLAVPALGVLAAEPLYLLVDTAVVGHLGGTPLAALAVGGVVLAQLSTQLTFLAYGTTARAARQHGAGQRAGAVAEGVAATWLALAVGLVLVGVGQLFAGPVVRLLAGPGQVADAAVGWLRIALLGVPLILVTMAGNGWMRGVQETARPLRYVLAGNGISAVLCPLLVHVAGMGLTGSAVANVVAQAISAALFLRALAVERVLLRPEPARLRAQLTAGRDLVLRSLAFQACFVSAIAVAARTSAAAVGAHQVVLQLWVFLSLVLDSLAIAAQALVGAALGGRDETSARALARQVTGYGLIFGLLLAAVFCVLYPVLPKVFTSDAAVLGEIPNAWWFFVALQPVAGVVFALDGVLLGAGDAAFLRTATLTAALLGFLPMAWLSLALDWGLMGIWTGLTAFMLIRLATVLGRLRSGRWAVPGMISP
>NZ_CP011883.2|WP_156406796.1|3180406_3180550_+|hypothetical-protein
MTSAGTSKRARTPVPPELVVIGNHRQAIALMVDDGQTARSVAVFAVP
>NZ_CP011883.2|WP_156166359.1|3180570_3180993_+|hypothetical-protein
MQRWRGLDSLPSGWSRCVATIGAFDGVHRGHQELINRAVQLARGCGVPCVLPFTLELSKVTRDIAVKLRGAVYGSEDGTVAALRTQIAALRANRVDTLASYRGHEKHTFPDPSLLRGGIRAEESTIDGLDEVAAALQQTS

Crispr_ID: NZ_CP011883_17

• CRISPR_ID: NZ_CP011883_17
• CRISPR_location: 3701613-3701699
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP011883_17

Consensus_repeat	Method
CGAGGTTGCATGCGTGGCGACCCGCTACGC	CRISPRCasFinder

spacers of NZ_CP011883_17

>17.1|3701643|27|NZ_CP011883|CRISPRCasFinder
CCGGCTCCGCCGCGCTTGCGATCACCA

CRISPR arrays and Neighbor proteins around NZ_CP011883_17

CRISPR arrays

The CRISPR arrays of NZ_CP011883_17

>merge|NZ_CP011883|17|3701613-3701699|CRISPRCasFinder
CGAGGTTGCATGCGTGGCGACCCGCTACGCCCGGCTCCGCCGCGCTTGCGATCACCACGAGGTTGCATGCGTGGCGACCCGCTACGC

>NZ_CP011883|17|17|3701613-3701699|CRISPRCasFinder
CGAGGTTGCATGCGTGGCGACCCGCTACGC	CCGGCTCCGCCGCGCTTGCGATCACCA
CGAGGTTGCATGCGTGGCGACCCGCTACGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011883.2|WP_082129335.1|3689181_3690099_+|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224995
NZ_CP011883.2|WP_047316343.1|3706886_3707078_-|ferredoxin	unknown	unknown	gnl|CDD|224064
NZ_CP011883.2|WP_047316346.1|3694425_3694998_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_156406827.1|3699182_3700577_-|MCE-family-protein	unknown	unknown	gnl|CDD|273384
NZ_CP011883.2|WP_054879284.1|3711194_3711515_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054879286.1|3708500_3709598_+|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl|CDD|224871
NZ_CP011883.2|WP_156166578.1|3701714_3702767_-|MCE-family-protein	unknown	unknown	gnl|CDD|273384
NZ_CP011883.2|WP_047316321.1|3690250_3691165_-|enoyl-CoA-hydratase	unknown	unknown	gnl|CDD|236220
NZ_CP011883.2|WP_054879288.1|3705893_3706796_-|3-oxoacyl-ACP-reductase	unknown	unknown	gnl|CDD|181120
NZ_CP011883.2|WP_047316313.1|3703981_3704824_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223838
NZ_CP011883.2|WP_047316319.1|3695106_3695589_-|mammalian-cell-entry-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054879289.1|3702760_3703963_-|MCE-family-protein	unknown	unknown	gnl|CDD|273384
NZ_CP011883.2|WP_047316317.1|3698031_3699186_-|MCE-family-protein	unknown	unknown	gnl|CDD|273384
NZ_CP011883.2|WP_047316320.1|3692834_3694391_+|trehalose-6-phosphate-synthase	unknown	unknown	gnl|CDD|223457
NZ_CP011883.2|WP_054879285.1|3709687_3711190_+|AMP-binding-protein	unknown	unknown	gnl|CDD|236120
NZ_CP011883.2|WP_047316312.1|3704830_3705595_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223838
NZ_CP011883.2|WP_156166235.1|3692669_3692834_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_047316345.1|3695588_3696314_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP011883.2|WP_054879290.1|3696325_3698008_-|virulence-factor-Mce-family-protein	unknown	unknown	gnl|CDD|273384
NZ_CP011883.2|WP_054879287.1|3707296_3708478_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP011883.2|WP_082129335.1|3689181_3690099_+|NAD(P)-dependent-oxidoreductase	gnl|CDD|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.96261e-79
NZ_CP011883.2|WP_054879287.1|3707296_3708478_+|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	5.19237e-166
NZ_CP011883.2|WP_156406827.1|3699182_3700577_-|MCE-family-protein	gnl|CDD|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	1.32082e-82
NZ_CP011883.2|WP_054879286.1|3708500_3709598_+|acyl-CoA/acyl-ACP-dehydrogenase	gnl|CDD|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.75627e-48
NZ_CP011883.2|WP_156166578.1|3701714_3702767_-|MCE-family-protein	gnl|CDD|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	3.71946e-78
NZ_CP011883.2|WP_047316321.1|3690250_3691165_-|enoyl-CoA-hydratase	gnl|CDD|236220	PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.	7.92256e-163
NZ_CP011883.2|WP_054879290.1|3696325_3698008_-|virulence-factor-Mce-family-protein	gnl|CDD|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	3.06002e-75
NZ_CP011883.2|WP_054879285.1|3709687_3711190_+|AMP-binding-protein	gnl|CDD|236120	PRK07867, PRK07867, acyl-CoA synthetase; Validated.	0
NZ_CP011883.2|WP_054879289.1|3702760_3703963_-|MCE-family-protein	gnl|CDD|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	3.27536e-74
NZ_CP011883.2|WP_047316343.1|3706886_3707078_-|ferredoxin	gnl|CDD|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	9.76861e-13
NZ_CP011883.2|WP_047316320.1|3692834_3694391_+|trehalose-6-phosphate-synthase	gnl|CDD|223457	COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism].	0
NZ_CP011883.2|WP_047316312.1|3704830_3705595_-|ABC-transporter-permease	gnl|CDD|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	4.10097e-88
NZ_CP011883.2|WP_047316317.1|3698031_3699186_-|MCE-family-protein	gnl|CDD|273384	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells. [Cellular processes, Pathogenesis].	1.15911e-71
NZ_CP011883.2|WP_054879288.1|3705893_3706796_-|3-oxoacyl-ACP-reductase	gnl|CDD|181120	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	2.91449e-175
NZ_CP011883.2|WP_047316313.1|3703981_3704824_-|ABC-transporter-permease	gnl|CDD|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	9.29679e-73

Protein sequences

>NZ_CP011883.2|WP_156406827.1|3699182_3700577_-|MCE-family-protein
MMAKVGMVKGIAGGRGLRYGAVIALVAVLVGGVYVLSSGRNSRTIVGYFASAVGIYPGDQVRVLGVPVGEIDAIEPRASDVKITMSVSKDVKVPLDARAVIMSPNLVAARFIQLTPAYTGGAVLPDGGSIDLGRTAVPVEWDEVKEALSQLAAQLSPASGQMQGVLGAAINQAADTLDGNGESFHNALRELAQVAGRLGDSRDDIFGTVKNLQVLVNALAASNEQIVQFAGNVSSVSQVLADSSRNLDGTLATLNKAMVDIRGFLHENNSTLIGTVNKLNDFAQTLSDQSDNIEQVLHVAGPGIANFYNIYDPAQGTLNGLVSIPEFANPVQFICGGSFDTVAGPSAPDYFRRAEICRERLGPVLRRLTMNYPPIMFHPLNTITAYKGQIIYDTPATQAKAQTPVPELTWIPAQRSPTMQNPADLQSLLVPPAPEVGPTPGPAPLPAPAPASTEPLPAEQSSGR
>NZ_CP011883.2|WP_047316317.1|3698031_3699186_-|MCE-family-protein
MNRILLRGSVLAAASALLAGCQFGGLNSLPLPGTAGHGSGAYTITVEMADVATLPQNSPVMVDEVTVGSVSGIQAKQRADGSFYAAVKLALDKDVVLPANATAKVAQTSLLGSLHIDLTGPRNQPPNGRLSNGATIQESSTGRLPTTEEVFSALGLVINKGNVGALEDITNETYQAVAGRQDQFVDLIPRLAELTAGLNRQVNDIIDAVDGINRFSAILASDKDNLGRALDTLPEAVRVLNNNRDRIVEVFAALERLAMVTSHVLTKIKVDFAADLKGLYSVVKALNDNRKDFVTSLQLLLTFPFPNFGIKQAVRGDYLNVFTTFDLTLRRIGETFFTTSYFDPNMTHLAEVLNPPDFLIGELANLSGQAADPFKIPAGTAAGQ
>NZ_CP011883.2|WP_054879290.1|3696325_3698008_-|virulence-factor-Mce-family-protein
MIDRLTKIQVGIFALVTAITLTLIVIFYLRVPAAFGIGTYHVTADFEAGGGLYKNANVTFRGVAVGRVESVGLNPSGVDAQMRLNSGTAIPLNVIASVKSVSAIGEQYVDLVPPAKPSSIKLRNGSRIQRSNTRIGEDVATLLHQVEALVNSLGDTRLRDLLHETFAAANGSGPELARLLESARLLVDEANADYPQISQLIDQAGPLLQAQIRAGADIKSLADGLARVTSELRQADPQVRSTLANAASTADEGSTAFSGIRPSFPALAASLANLGRVGVIYHKSIEQLLVVLPALFAALTTAAGGAPQDEGAKLDFKVDLNDPPPCAVGFLPPPLIRSPADETLRELPKDMYCKAAQNDPSTVRGARNYPCQEYPGKRAPTIQLCRDPKGYVPVGTNPWRGPPIPSGTPVTDGRNILPPNKFPYIPPGADPDPGAPIVGPPPPGEVAGPGPAPHQPAMVPPPPNDNGPPPPFTSWMPPGYPPQPPQLPYPATIPPPPSPEGTGPTPGPQPQASGPAYTTYDQNTGAFADPAGGTGIFAPGINGASSAENWVDLMRDPRPL
>NZ_CP011883.2|WP_047316345.1|3695588_3696314_-|hypothetical-protein
MTSRVTGQPPTPPRVRRRASRAAGPAKGQPGATTTVRADGAAGQPKPAQPSRPERPVGPSGRVKPPPRRPAHRVLVGSIALAGALLAITALAGCLTALVVQHRHNEAEQARDQRFVDTATQTVVNMFSYRPDNIDESVNRFVNGTSGPLRGMLSSNNNVDNLKGLFRSTNATSEAVVNGAALEGVDPVTDNASVLVSVRVTVADIDGVNKPSMPYRLRVIVHEDDGGRMTGYDLKYPDGGN
>NZ_CP011883.2|WP_047316319.1|3695106_3695589_-|mammalian-cell-entry-protein
MRWLNAVTCSVLVAVIVGLSAAGGWFYWERVQTGGEESARAVLPELAAKEIPEVFAYDYQTVERSLTAAYPLLTPDYRHEFQKSADSQIIPEAKKREVVVQANVVGVGVMFAKRDSASVMVYMNRTVTDKSRQPLYDGSRLRVDFTKIGDKWLIAYITPI
>NZ_CP011883.2|WP_047316346.1|3694425_3694998_+|hypothetical-protein
MRRGLAAGAGILSAIALGIALQSADPASAVGPPPDGNYNFNQAGVSGVTWTITALCDQPSGTRNQADYSDPVTWAFQCALNVASQTPEQITRADRLQNFSARARLASVLWTFQVNQPEGVSCPDGSTAPSTETYSFDDATLAGTHTTLHGAVCGLQPEMSKQPFSLQLVGPPPSPVQRYPLYCNNIAMCY
>NZ_CP011883.2|WP_047316320.1|3692834_3694391_+|trehalose-6-phosphate-synthase
MAPGGDHGSKASRGERLGDSDFVVVANRLPVDQVRLPDGTATWKRSPGGLVTALEPLLRRRRGAWVGWPGVVDDDVDLDLDIEPFIQDDLTLYPVRLSTQDVAEYYEGFSNATLWPLYHDVIVKPIYHREWWECYVDVNRRFAEATSRTAAHGATVWVQDYQLQLVPRMLRTMRPDLTIGFFLHIPFPPVELFMQMPWRTEIIEGLLGADLVGFHLASGAQNFLFLSRHLLGANTSRGLVGVRSRFGAVQFAAIASARHLATMQPAKRAEEESRTVQVGAFPISIDSREIDQAARDRNIRRRAREIRAELGNPRKILLGVDRLDYTKGIDVRLKAFAELLAEGRAKRDDTVLVQLATPSRERVESYQLLRNDIERQVGHINGEYGEVGHPVVHYLHRPVPRDELIAFYVASDVMLVTPLRDGMNLVAKEYVACRNDLGGALVLSEFTGAAAELRQAYLVNPHDLEGVKDAIEAALNQPAEEARRRMRSLRRQVLAHDVDRWARSFLDALAEAPARDTT
>NZ_CP011883.2|WP_156166235.1|3692669_3692834_+|hypothetical-protein
MPTKSDPGEIDDVEPLADSTASQARRVVAAYANDADECRIFLSMLGIGPAKHET
>NZ_CP011883.2|WP_047316321.1|3690250_3691165_-|enoyl-CoA-hydratase
MTVSDQTNTHELVAYETLDDGRIARIWLNRPDAHNAQNRTLLVQLDEAFSRAEADDAVRVVILAARGRNFSAGHDLGSDAALLERKPGPGQHPTFRSYGATRDAVAEKTYLQEWHYFFQNTCRWRDLRKITIAQVQGNAISAGLMLIWACDLIVAADNAKFSDVVAVRMGMPGVEYYAHPWEFGPRKAKELLLTGDALDADEAYRLGMVSKVFPLEELEAKTLEFARRIAERPTMAALLIKDSVNAASDAMGFTEALRHAFHVHELGHAHWAARNENRYPVGLPPDVEDWRTAKPAKVARRDTP
>NZ_CP011883.2|WP_082129335.1|3689181_3690099_+|NAD(P)-dependent-oxidoreductase
MVDGMDIGFIGLGNMGSGMAANLVKAGHQVTVYNRSPDKAQALVQQGATAARTVAEASSGAVVFSMLSDDRAVEDVVFGEDGIVTSLAPGATHVSSSTISVALSERLAAAHTQAGQRYAAAPVFGRPEASSAAELFVIAAGAPQVLEPLLPLFDAIGQRTFVVSEQPHAANLVKLSGNFLLASAVETVGEAVALVTKAGVDRQQYVDILTSTLFTAPAYQTYGGLIARQEFEPAGFAATLGLKDLRLVLAAASDLQVPLPVASLLRDRLLTLVATGNGHLDWSAVAMLADRDAGTASTPDSHHPT
>NZ_CP011883.2|WP_156166578.1|3701714_3702767_-|MCE-family-protein
MLMALLPSYRSMAIKVSVFTAAMLLVAAGLVVVFGDFRFGPQNTYHATFTDASQLKAGQKVRIAGVPVGSVQNVKLNRDNSVDVTFGIDKHYTLYSSTRAVIRYENLVGDRFLEITAGPGELRKLPPGGTINSAHTQPALDLDALLGGLRPVLKGLDADKVNTISSAVIELLQGQGGALSKVLASTSAFSSALGKRDQLIGDTITNLNAVLSTVDHKSAQFSASVDQLQQLITGLAKNRDTIGGAIPPLASTTTDLTQLLQNSRRPLQGILENARPLATELDNRKAEINNDVEQLGEDYLRLAALGAYGAFFNIYFCTVTIKINGPAGSDILLPIGGQPDPSKGRCAFVK
>NZ_CP011883.2|WP_054879289.1|3702760_3703963_-|MCE-family-protein
MANAGSRRRTVRLAAALLAGLIVASVALTYFSYTTAFTSTDTVTVSSPRAGLVMEKGAKVKYRGIQIGKVTDISYRDDQAQLTLAIDSAEMRFIPSNATVHIAGNTIFGAKSVDFVPPDTTPARPLRPNAHVRASAVQLEVNTLFQSLIDLLRKINPVDLNATLSALSEGLRGHGDDLGALLSGLNTLAQQANPKLATLQEDFRKAAVVANIYADAAPDLNTVINNVPTISRTIVDQRHNLNDALLATIGLSNNAYETLEPAEQNLIDSVSRLRAPLKVGADYSPEMGCLFRGISRGVREFAPLIGVRKAGLFTSSSFILGSPAYTYPESLPIVNASGGPNCRGLPDIPTKQAGGSFYRAPFLVTDNAYIPYEPFTELQVDAPSTLQFLWNGAFAERDKF
>NZ_CP011883.2|WP_047316313.1|3703981_3704824_-|ABC-transporter-permease
MSYDLTIRVRRFVSRLQRPVDEFGEQALFYGQTVRYIPNALTRYRKETIRLVAEMTLGAGALVMIGGTVGVAAFLTLASGGVIAVQGYSSLGDIGIEALTGFLSAFLNVRVVAPVIAGIALAATIGAGATAQLGAMRVSEEIDAVECMAVHAVSYLVSTRLIAGLVAIIPLYSLSVLAAFFAARFTTVYINGQSKGLYDHYFNTFLIPSDLLWSFLQAIVMSIAVMLVHTYYGYNASGGSVGVGIAVGQAVRTSLIVVVVITLLISLAVYGASGNFNLSG
>NZ_CP011883.2|WP_047316312.1|3704830_3705595_-|ABC-transporter-permease
MIQQLAVPARAVGGFFEMSLDTLRATFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLRELVLAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLFVINVVMTAIGVRLSAK
>NZ_CP011883.2|WP_054879288.1|3705893_3706796_-|3-oxoacyl-ACP-reductase
MNATDLSGKVAVVTGAAAGLGRAEAIGLARLGATVVVNDIAAALDASDVIDEIGAVGSKAVAVAGDISQRATADELITRADGLGGLDIAVNNAGITRDRMLFNMSDDDWDQVIAVHLRGHFLLTRNAATYWRTQAKEANEGSIYGRIINTSSEAGLVGPVGQANYGAAKAGITALTLSAARALGRYGVCVNAICPRARTAMTADVFGEAPEIAEGQIDPLSPEHVVTLVQFLASPAAAEVNGQVFIVYGPRVTLVAPPSVERQFGADGSAWQPDQLSATLQNYFAGRDPERNFSAIGLMA
>NZ_CP011883.2|WP_047316343.1|3706886_3707078_-|ferredoxin
MRVIVDRDRCEGNAVCLGLAPDVFDLDDEDYAVVKTDPVPSDQEDRVEQAIAECPRAALLRQD
>NZ_CP011883.2|WP_054879287.1|3707296_3708478_+|acyl-CoA-dehydrogenase
MRISYTPAQEELRRELRSYFTTLMTPERREALSSVQGEYGTGNVYRETVAQMGKDGWLTLNWPKEYGGQDRSPMDSLIFTDEAAIAGAPVPFLTINSVAPTIMAYGTDEQKKFFLPRIAAGDLHFAIGYSEPGAGTDLANLRTTAVRDGDDYVINGQKMWTSLIQYADYVWLAVRTNTEAKKHRGISVLIVPTTAEGFSWTPVHTMAGPDTSATYYSDVRVPVTNRVGEENGGWRLVTNQLNHERVALVSPAPIMTCLREVREWAQHTKDASGARLIDSEWVQLNLARVHAKVEVLKLINWELASSQHASPSPADASAAKVFGTELATEAYRLLMEVLGTGATLRQDSPGALLRGRAERMHRACLILTFGGGTNEVQRDIIGMVALGLPRANR
>NZ_CP011883.2|WP_054879286.1|3708500_3709598_+|acyl-CoA/acyl-ACP-dehydrogenase
MDFTTTEAAADLGGLVDTIVDAVCTPEHQRELDRLDQRFDQQLWRKLIDADILSTAAAESLGGGGFGVLEQTAVLVALGHQLAAVPYLESVVLGAGALAWFGSADLQQGWGASAVSGDKILTVALDGEMGEGPVRATRAGDGYRLTGTRTQAGYAPTADAFLIPAETDSGKAVFLVAANDPGVSVTALHTTGLGSVGHLTLDGVAVDAARAVGGNEVVTWLELRAALGRSAFQLGILERGLQLTADYARTREQFDRPIGSFQAVAQRLADGYIDIKGLRLTLTQAAWRVSEDAPADIDVASAAFWAADAGHRVAHTIVHVHGGVGIDTDHPVHRYFLAAKETEFALGGATRQLRRIGRELAETPA
>NZ_CP011883.2|WP_054879285.1|3709687_3711190_+|AMP-binding-protein
MADPTVTELLVPLAEIDDRGVYFEDSFTSWRDHLRHGAAIAATLRERLDPQRPPHVGVLLENTPFFSAVLVAAGLSGIVPVGLNPVRRGVALARDISRADCQLVLVDSKSAATLDDIEHLNVDSAEWADDVAAHQNDAPSFRSASPSDLFMLIFTSGTSGEPKAVKCSHGKVAIAGAAMTQRFELGRDDVCYVSMPLFHSNAVLVGWAVAAACQGSMALRRKFSASNFLVDVRRYGATYANYVGKPLSYVLATPEQPDDADNPLRAVYGNEGVPEDIERFSRRFGCDVQDGFGSTEGGVAIARTPDTPAGALGPLPEGIEIVDPDTGQPCPAGVVGELVNTAGPGRFEGYYNDAAAEAERMAGGSYHSGDLAYRDDAGYAYFAGRLGDWMRVDGENLGTTPIEQVLLRYPDATEVAVYPVPDPVVGDQVMAALVTASGAQFDPEKFRAFLAEQPDLGPKQWPSYVRVCASLPRTVTFKVLKRQLSADGVNCGDPVWPICR
>NZ_CP011883.2|WP_054879284.1|3711194_3711515_+|hypothetical-protein
MAPRRLKLALETKALSSFAQRCQPTLVSRLPGQAEPFAGSVARWRRLVTIKVPLTIATFGEPADTARKVQAVPAKSGYTAAAVGFQRLLLGYNVFGQTPWALRQQA

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011883_15	15.1|3035036|35|NZ_CP011883|CRISPRCasFinder	3035036-3035070	35	NZ_CP011883.2	3034978-3035012	0	1.0
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3500508-3500534	0	1.0
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3500565-3500591	0	1.0
NZ_CP011883_2	2.1|947882|27|NZ_CP011883|CRISPRCasFinder	947882-947908	27	NZ_CP011883.2	938346-938372	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	701369-701395	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2620306-2620332	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2620420-2620446	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3401235-3401261	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	889228-889254	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2538464-2538490	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3029397-3029423	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3330242-3330268	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3346499-3346525	1	0.963
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3346556-3346582	1	0.963
NZ_CP011883_7	7.1|1500308|50|NZ_CP011883|CRISPRCasFinder	1500308-1500357	50	NZ_CP011883.2	167882-167931	2	0.96
NZ_CP011883_7	7.1|1500308|50|NZ_CP011883|CRISPRCasFinder	1500308-1500357	50	NZ_CP011883.2	167969-168018	2	0.96
NZ_CP011883_7	7.1|1500308|50|NZ_CP011883|CRISPRCasFinder	1500308-1500357	50	NZ_CP011883.2	131042-131091	2	0.96
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	368000-368026	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	613655-613681	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	646153-646179	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	872055-872081	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1355268-1355294	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1589091-1589117	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1736986-1737012	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2558648-2558674	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2558705-2558731	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2620363-2620389	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3949881-3949907	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3953348-3953374	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3953405-3953431	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	4024843-4024869	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	476458-476484	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1347373-1347399	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1395089-1395115	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1520715-1520741	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	1833732-1833758	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	2599832-2599858	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3015324-3015350	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3015381-3015407	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3015438-3015464	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3015495-3015521	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3111953-3111979	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3250200-3250226	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3542391-3542417	2	0.926
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP011883.2	3542445-3542471	2	0.926

1. spacer 15.1|3035036|35|NZ_CP011883|CRISPRCasFinder matches to position: 3034978-3035012, mismatch: 0, identity: 1.0

cggcgacgatgcagacggcgtagccgtctgaggag	CRISPR spacer
cggcgacgatgcagacggcgtagccgtctgaggag	Protospacer
***********************************

2. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3500508-3500534, mismatch: 0, identity: 1.0

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcacca	Protospacer
***************************

3. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3500565-3500591, mismatch: 0, identity: 1.0

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcacca	Protospacer
***************************

4. spacer 2.1|947882|27|NZ_CP011883|CRISPRCasFinder matches to position: 938346-938372, mismatch: 1, identity: 0.963

gctcatgtccaatgtcgtcgccggccc	CRISPR spacer
gctcatgttcaatgtcgtcgccggccc	Protospacer
********.******************

5. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 701369-701395, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

6. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2620306-2620332, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

7. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2620420-2620446, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

8. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3401235-3401261, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

9. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 889228-889254, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctacgccgcgcttgcgatcacca	Protospacer
****** ********************

10. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2538464-2538490, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

11. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3029397-3029423, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

12. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3330242-3330268, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcgcca	Protospacer
***********************.***

13. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3346499-3346525, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcatca	Protospacer
************************.**

14. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3346556-3346582, mismatch: 1, identity: 0.963

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgatcatca	Protospacer
************************.**

15. spacer 7.1|1500308|50|NZ_CP011883|CRISPRCasFinder matches to position: 167882-167931, mismatch: 2, identity: 0.96

tgggggtacctcccagccgcgaagcggcgagggggagaacggcgcgaatg	CRISPR spacer
tgggggtacctcccagccgcgaagcggcgagggggagagcggcgccaatg	Protospacer
**************************************.****** ****

16. spacer 7.1|1500308|50|NZ_CP011883|CRISPRCasFinder matches to position: 167969-168018, mismatch: 2, identity: 0.96

tgggggtacctcccagccgcgaagcggcgagggggagaacggcgcgaatg	CRISPR spacer
tgggggtacctcccagccgcgaagcggcgagggggagagcggcgccaatg	Protospacer
**************************************.****** ****

17. spacer 7.1|1500308|50|NZ_CP011883|CRISPRCasFinder matches to position: 131042-131091, mismatch: 2, identity: 0.96

tgggggtacctcccagccgcgaagcggcgagggggagaacggcgcgaatg	CRISPR spacer
tgggggtacctcccagccgcgaagcggcgagggggagagcggcgcgcatg	Protospacer
**************************************.******* ***

18. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 368000-368026, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccacgcttgcgatcgcca	Protospacer
***********.***********.***

19. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 613655-613681, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgctggcgatcgcca	Protospacer
**************** ******.***

20. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 646153-646179, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgagcttgcgatcgcca	Protospacer
************ **********.***

21. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 872055-872081, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctacgccgcgcttgcgatcgcca	Protospacer
****** ****************.***

22. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1355268-1355294, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcatca	Protospacer
******.*****************.**

23. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1589091-1589117, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgctggcgatcacca	Protospacer
******.********* **********

24. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1736986-1737012, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcatca	Protospacer
******.*****************.**

25. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2558648-2558674, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgtttgcgatcgcca	Protospacer
**************.********.***

26. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2558705-2558731, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgtttgcgatcgcca	Protospacer
**************.********.***

27. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2620363-2620389, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggttccgccgcgcttgcgatcgcca	Protospacer
****.******************.***

28. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3949881-3949907, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcacttgcgatcgcca	Protospacer
*************.*********.***

29. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3953348-3953374, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctgcgccgcgcttgcgatcgcca	Protospacer
****** ****************.***

30. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3953405-3953431, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctgcgccgcgcttgcgatcgcca	Protospacer
****** ****************.***

31. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 4024843-4024869, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcgcca	Protospacer
******.****************.***

32. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 476458-476484, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctcggccgcgcttgcgatcgcca	Protospacer
******* ***************.***

33. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1347373-1347399, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcatca	Protospacer
******.*****************.**

34. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1395089-1395115, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgcgcttgcgaccgcca	Protospacer
*********************.*.***

35. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1520715-1520741, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcatca	Protospacer
******.*****************.**

36. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 1833732-1833758, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctgcgccgcgcttgcgatcgcca	Protospacer
****** ****************.***

37. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 2599832-2599858, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgctggcgatcacca	Protospacer
******.********* **********

38. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3015324-3015350, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgagcttgcgatcgcca	Protospacer
************ **********.***

39. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3015381-3015407, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgagcttgcgatcgcca	Protospacer
************ **********.***

40. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3015438-3015464, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgagcttgcgatcgcca	Protospacer
************ **********.***

41. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3015495-3015521, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctccgccgagcttgcgatcgcca	Protospacer
************ **********.***

42. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3111953-3111979, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctgcgccgcgcttgcgatcatca	Protospacer
****** *****************.**

43. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3250200-3250226, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggccccgccgcgcttgcgatcgcca	Protospacer
*****.*****************.***

44. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3542391-3542417, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcgcca	Protospacer
******.****************.***

45. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to position: 3542445-3542471, mismatch: 2, identity: 0.926

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggcttcgccgcgcttgcgatcgcca	Protospacer
******.****************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011883_9	9.1|1793397|32|NZ_CP011883|CRISPRCasFinder	1793397-1793428	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	492089-492120	3	0.906
NZ_CP011883_9	9.1|1793397|32|NZ_CP011883|CRISPRCasFinder	1793397-1793428	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	509630-509661	3	0.906
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	492096-492122	3	0.889
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	509637-509663	3	0.889
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP041164	Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence	60746-60774	4	0.862
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	266572-266598	4	0.852
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	696615-696641	4	0.852
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	775176-775202	5	0.815
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NZ_CP046575	Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence	111620-111646	5	0.815
NZ_CP011883_2	2.1|947882|27|NZ_CP011883|CRISPRCasFinder	947882-947908	27	NC_013930	Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence	99194-99220	6	0.778
NZ_CP011883_2	2.1|947882|27|NZ_CP011883|CRISPRCasFinder	947882-947908	27	CP000622	Burkholderia phage phiE255, complete genome	12513-12539	6	0.778
NZ_CP011883_2	2.1|947882|27|NZ_CP011883|CRISPRCasFinder	947882-947908	27	NC_009237	Burkholderia phage phiE255 chromosome, complete genome	12513-12539	6	0.778
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	57530-57558	6	0.793
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP014308	Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence	153633-153661	6	0.793
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP014309	Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence	681477-681505	6	0.793
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	190723-190751	6	0.793
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	34549-34575	6	0.778
NZ_CP011883_17	17.1|3701643|27|NZ_CP011883|CRISPRCasFinder	3701643-3701669	27	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1215489-1215515	6	0.778
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NC_023136	Leisingera methylohalidivorans DSM 14336 plasmid unnamed, complete sequence	216766-216794	7	0.759
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	773348-773376	8	0.724
NZ_CP011883_9	9.1|1793397|32|NZ_CP011883|CRISPRCasFinder	1793397-1793428	32	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	561342-561373	8	0.75
NZ_CP011883_4	4.1|1237069|29|NZ_CP011883|CRISPRCasFinder	1237069-1237097	29	NZ_CP038239	Leisingera sp. NJS201 plasmid unnamed5, complete sequence	80205-80233	9	0.69
NZ_CP011883_15	15.1|3035036|35|NZ_CP011883|CRISPRCasFinder	3035036-3035070	35	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	109200-109234	9	0.743
NZ_CP011883_14	14.1|2240062|34|NZ_CP011883|CRISPRCasFinder	2240062-2240095	34	NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	96860-96893	10	0.706

1. spacer 9.1|1793397|32|NZ_CP011883|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.906

gcgatcacaagcgcggcgcagccgggcgcagt	CRISPR spacer
gcgatcgcaagcgcggcgcagccgggcgcggc	Protospacer
******.**********************.*.

2. spacer 9.1|1793397|32|NZ_CP011883|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.906

gcgatcacaagcgcggcgcagccgggcgcagt	CRISPR spacer
gcgatcgcaagcgcggcgcagccgggcgcggc	Protospacer
******.**********************.*.

3. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.889

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctgcgccgcgcttgcgatcgcct	Protospacer
****** ****************.** 

4. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.889

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ccggctgcgccgcgcttgcgatcgcct	Protospacer
****** ****************.** 

5. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP041164 (Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.862

-gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
tgtc-caggacgaccgcaagctcggcgaaa	Protospacer
 *** *. *****.****************

6. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 4, identity: 0.852

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
tcggcgccgccgcgctcgcgatcaccg	Protospacer
.**** **********.*********.

7. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 4, identity: 0.852

ccggctccgccgcgcttgcgat-cacca	CRISPR spacer
acggctccgccgcgcttgcgtcgcacc-	Protospacer
 ******************* . **** 

8. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.815

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ttgcctccgccgcgctggcggtcacca	Protospacer
..* ************ ***.******

9. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NZ_CP046575 (Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence) position: , mismatch: 5, identity: 0.815

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
tggtcgccgccgcgctggcgatcacca	Protospacer
. * * ********** **********

10. spacer 2.1|947882|27|NZ_CP011883|CRISPRCasFinder matches to NC_013930 (Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence) position: , mismatch: 6, identity: 0.778

gctcatgtccaatgtcgtcgccggccc	CRISPR spacer
cctcatgtcgaatttcgtcgccggtat	Protospacer
 ******** *** **********. .

11. spacer 2.1|947882|27|NZ_CP011883|CRISPRCasFinder matches to CP000622 (Burkholderia phage phiE255, complete genome) position: , mismatch: 6, identity: 0.778

gctcatgtccaatgtcgtcgccggccc	CRISPR spacer
gtcgatgtccaatctcgtcgccggcgg	Protospacer
*.. ********* ***********  

12. spacer 2.1|947882|27|NZ_CP011883|CRISPRCasFinder matches to NC_009237 (Burkholderia phage phiE255 chromosome, complete genome) position: , mismatch: 6, identity: 0.778

gctcatgtccaatgtcgtcgccggccc	CRISPR spacer
gtcgatgtccaatctcgtcgccggcgg	Protospacer
*.. ********* ***********  

13. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 6, identity: 0.793

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
ggacggtgacgatggcaagcttggcgaaa	Protospacer
*    ******** *******.*******

14. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
ttgccgtgacgttcgcaagttcggcgaat	Protospacer
 *  ******* *******.******** 

15. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
ttgccgtgacgttcgcaagttcggcgaat	Protospacer
 *  ******* *******.******** 

16. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 6, identity: 0.793

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
gtcacgagacgagcgcaagctcgacatga	Protospacer
****** ***** **********.*. .*

17. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 6, identity: 0.778

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
ctctttccgccgcgcttgccatcaccg	Protospacer
*.  .************** ******.

18. spacer 17.1|3701643|27|NZ_CP011883|CRISPRCasFinder matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

ccggctccgccgcgcttgcgatcacca	CRISPR spacer
tcctgtccgccgcgctcgcgatcacct	Protospacer
.*   ***********.********* 

19. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NC_023136 (Leisingera methylohalidivorans DSM 14336 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
tgtacaagacgaccgcaagctcggcgaac	Protospacer
  .**. *****.*************** 

20. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.724

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
gggtggtgacgatggcaagctcggcgccg	Protospacer
*    ******** ************  .

21. spacer 9.1|1793397|32|NZ_CP011883|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatcacaagcgcggcgcagccgggcgcagt	CRISPR spacer
gcctggaaaagagcggcggagccgggcgcaga	Protospacer
**    * *** ****** ************ 

22. spacer 4.1|1237069|29|NZ_CP011883|CRISPRCasFinder matches to NZ_CP038239 (Leisingera sp. NJS201 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.69

gtcacgtgacgatcgcaagctcggcgaaa	CRISPR spacer
tgtgaaggacgaccgcaagctcggcgaat	Protospacer
  .. . *****.*************** 

23. spacer 15.1|3035036|35|NZ_CP011883|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

cggcgacgatgcagacggcgtagccgtctgaggag	CRISPR spacer
tggcgacgatgccgacggcgtggccgtccatccgg	Protospacer
.*********** ********.******..   .*

24. spacer 14.1|2240062|34|NZ_CP011883|CRISPRCasFinder matches to NZ_CP012918 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence) position: , mismatch: 10, identity: 0.706

tgcaacggcgcgaggagaagctgagcgatccagc	CRISPR spacer
tagccagtgtcgaggagatgctgggcgatccagc	Protospacer
*.    *   ******** ****.**********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2422578 : 2445111	9	Mycobacterium_phage(42.86%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP011883|2422578:2445111|DBSCAN-SWA
GTCAGCGTGCCAGTGAGAAGCCGTCCCATGCCATCCGCCGGTGCGGGTGCGGATCGAACTCGACGCGGCACTTGCGGTCGAACACCATGACGGCACGGTCGGCGCGGGTGTAAGCGGGCCAGTCGTCGCCAGGGACCCCAGTGCGGCCAAAGCATCGCCAGCGTCGTTGCACCTCGTTGCTGACCCGCAGCGCATGGTGGCGATCGGCGGCCGCGGTGAGTAACGCGCCGAACCTGGTGCGATAGATATCGAATACGGCCAATAGCTCGGTGGCGTGGGTTGCTCCCAAACCGGCCCAGCGCAGCATCCGCGGGGCGTAGTCGTATCGGTACATATATGTGGGCGCATGGTTGCCGTGCGCCTCGGCGATCTGCCAGGCCGCCGAGCTGAAGGCGAAGTCGCCACCGAGCTGGATGCAGGCTGATCGCTGCGGGTAGTCCGGATAGGCGGCGGTAATACGTTCACGCGCAGCCGGTTCCGTGTCGGTCAGCAACTCTTCGATCATCGATTCATTCGTCGGCAACATTTTGAGGAACCTGGTGAATAACCGGCCCTCTTCAGCGTTGGTACCGACAATGAGCGGCACCCGATGCGCGCGACCGGTCCGCATCGCTTCGACTGGGTCCAGGGGCAGACAGTCGTCGCCGACGACGGGACCAATCGGGAAGGCGCCCAGCTTTTTTCGCATGCCCTGCTCGATCAGGCGATGCTGTGTTGCCACCAGCTGGGCTGGGGATGCCTGCATCAGCGCAGCGCCGGCATCCGGTGCGCGCACACCAAGTAGTTTGGCAAAGCGCGTCGCGAACTCGTCGGCAATCTCTTTCGACCGCACCATGCCCGACGCCGGGCTTTCCGAAATCGCTCGAGTGAACAGGCCTTCGGCGGCAGGCACCGCCAACAGCGTGGCAATTATGCACGCGCCCGCGCTTTCGCCGAAAATGGTGACACAACCTGGGTTGCCGCCGAACTCGGCGATATTGTCTTTCACCCAGTGCAACGCCAGCACCAGATCGCGCAGATACAAGTTGCTGTCGATGGTGATATCCGGCCCAGACAGCGATGACAGGTCCAAACATCCCAACGCGCCGAGCCGGTAGTTGACCGAAACGTACACGCAGCCGCGGCGCGCCAACGCGGCGCCGTCGTAGAGCGGGGTCGCCGAGCTGCCCAAGATGTACCCGCCGCCATGGATGAAGACCATGACCGGGAGTGGTTCCCCGCTGGCGACTTCGGGCGTGACAACGTTGAGCGTCAGGCAGTCCTCGCCCATCGGTTGGTACTTACCGATACCGAGCATGGTGTAGCGACGCTGCTGAGGCGCACAGTTGGCGAAGCCGTGGCAGTGCCGCACCCCCGACCAGGGCTGGGCGGGCCGCGGCGCCCGGAACCGCAGGTGCCCCAGCGGCGGCTGAGCATATGGGATGGATCGCCAGCGGTGCACGCCGTCGCGGGTGAACCCCTCGACGGTGCCGGCGCGGGTGCGTGCGCGGATGGTGCGCTCGTGCATAACCCGACGGTAGCCGACACCACGGACGTAGTGCGCGCGCAGCGGCTAAATCCGGCGTGCGGCGGCTAGGCCGCGTACTCCCGAAGCTGACCGGAGGTGCAAAGTAGCGGAGGGATTCGCCGGATGGCGGCGTTGTCGTCTTCCAGTTAGGGCTCGTGCGCAGGTGGCTGTCATGCTCGACTATGCCCGTGCCGGCGGCATCGTGGTCGTCAGCGCCATAGATTGGCTCGGTGGCTTCTAGTCAACGTCGCAACAGTTGATGGTCTGCTGAGGTTAGCAGCGCGGCGAATAGTTCGGCGAGGCTGCGGTCTTCGAGGGTGCGGCGGGGTCGGTTGTTGATCTCGTGTTCGACAGCGCGCAGATAGTCGGGTGAGTAGGTGTCAGGCTGGTTCCCCTGGGAAAGTACTGGCGCAGAAGACCTTTCGCGTTCTCGTTGCGGCCACGTTGTCACGGTGAGATGGACAACAGCTGCCACGGTGAGCGGGAGTCTCAAAAGTAGACCGGCACGCCGAAATCTACAGTGATGTCGGTATGTCGGGCCATTTCGAAGCCCTGATCCCAGGTGATCGATCGGATCAGGGTCGATGGCAACCTTCCCGTCTCGTGACGCTGACTCTCTGCGCACCGTGATGGCTATGACCGTGGACGGCCTACGGGTAGCCGGAACCGTGGACGCGGCAGGACAGAGCCGTGGGGCTAGTTTTGGTCATCATGAACCACTTACTCTTTCAGGATGTTCGACGATGGGTTGATGAATCGCGGCCTGGGCACTCGGCCACCATTGACAAAGTTGTATCAGCTCCGCTGTCTCTTGGCCAAGGTCGGTCGCGCATGACATACGGACCATCGCCGCGTCTATCGGCTCTGGTCTAGCCCCAGTTCCTTTCGCGTGGACCGCTTTAGCGATCTGCAACGCCTGGATAGCTGCGTCACGCTGACCGGTGGGCACCACGTATCGGTCGACAAACCGAGCTTCCTCCTCCAGGGAGATCTCACGAAAGTAGGGCCTTAGAAGCAGTATTGCATCGCGTATTTCAATGATGGTCTGGTGCAGTTCCAAGACCGTCTTTTGGCGACTCGTCGAGGCGGGCTTCCATTCAAATACACTTTCAGGAACGACAGCCGTCAGGGTCTCTCGAAGTCCCTGAAGGGCATGCCAGGCGCGGCTGGTCCCGTCGAGGCCAGCGCGGGCACGCAGTGTCCCGACAGCAGGGACCGCGGCGAGCGCGTAGAGGACGAGTGACTGCCAGAAGCAATATCGGCTGTTTACTGCAATCAGGAAGCTGACGAAGTGACTGTTATGCACCCCACTTAGCTGCTCAAAGAACTTATAGCATAAGCTTCCGATGCAAATCATTACACCGAAACCGCCGACCATAACAGTACACCCGGCGATGAGCCGTTCTTGCCACTTCGCAGTGCGTCGCCATTCCGTGACGCTCATGATCATCATCTGAATGCCCAACACGTCGAGAACGATCGTCCACAAGAACCAGGCGAGCACGATGTCCCATCCATGGGCGAGCTCAAGGATCTGTCCGGCAGCGCGAGCGCGGGATGCGGCGATCAAGAAGGCTCCTGACAAGATGATCGCAGCTGATCGGTGATACCGTTGCCGGTGGCGAGTTTCCTGCGGCGGCAATCCTGACCACAGTGCAATGAAACCCATGAACTCTGCGCACGGTAACACGATCGCCACCCATGACAGCTCCTGTGCGGTGGTGACGGTCATTAAGTGATGACGGGCAAAGAATTCCTCAATAGTTTTCTCGCGCAACAGGTTGCAGACGAGAAAAAGCCCAATCGAATTGTTTAGATACACCTCGAATAGGCTGGTATTGAAGAAGGTGTACCGTACGACCAAGACCGCTAGCATGAATGCTAGCCCCGGCCAGACGAGGAATCCTGGTACGGCTGAGGTCATCTAGATCGGAAGAAGACGCTGCGCATCACTGACTTTTCGGCTCCCGCTTTTGCTGATGCGCACATCAAGGTGTGTGCAAAATTCTCTGCGTCGAGCTCTTGATCGTCCGCAAAGGATTTCCGGCCCAGGACATTTTGTATGGTGGTGAGATCGAGGTCGGGTAGCATTTTGCTGAATAGTTCGAGTTTAGGCGTCTTGTCGGTGCTGCCTTGGTGACTGCGGTGCCCTAACACCATGTGCCCGACCTCGTGGCAGACGATTTGATCGATGTGGTAGTCCGAGGTCCCAGCGTCGTAAAGGATGACGTCTTCGTCATCAAAGATCAACCACAATCCACAGGGGCCTTCGGTGAACGCCGAGGTATCGCTAGGCATCAACCGGATAGGCCGCCTTCTTTGACGGGCCAGATTGTCGATGAAGACGTTTCTATCCCATGGGACAGGAATGGGCAGCTCGCGCGCCAACGCGAGCATGTCAGCGTTCGATACAGCCATCTAGCCCCGACCATCCCCCAGGAGCGATTGGAGGCAACTGCTGCAGTTTGCGAACCTCGTCGACCATGGTCGCCAAGCTCGTTATCGCTTCCGGAGTCAGCCCCGATGCACGCATCGCCAAATCCCGTACCCCGCTGTCGCGAAGCGCTTGCAGCAGCCCGAGCTGGGCGTCGATCTTCGGGTCAGTATCGCGATCAATCAAGTACGAGGCTGGCACACCGAAGAAGTCCGCGATCGCACGCAGATGTTGCACCGTCGGGTTGGTCTTTGCCCCGTTTCGCAGCTGCCACATGTAAGCCTGGCTGATCGACACTCCGGTTTTTCGCGTGATCGCCTCGGCCGCAGCTACATTCGACAACGGTGGCTCAGACGGCTTACGCATGATTTCGAATAGCTTGTTCAGTTTGCCGGCCAGGTCAGAACTAGTCGCAGCACCACCATCGGCCGCTGCGCCGCCTGGTGTGTCACCGGTACGCAATGCACTCCCATTTCGCCGACTTGCTGCCCATTGGATACTGATTGTTACCACGCAAACCGATCCGCGCCAAACCCATCGACGCCCCGCCGCTCAAGATTAGCAAGTCACCACAGGCGTATACGTCAGCGGATTTCGTGACCTACGTATTAATACTTACATAATCGGTGCGATCCGGTGAGGCGCTGGCCAACAGCAGTCTACGTACGTGCACACGTTGTAATTACGTATTTTTCAGTAAAATTCGCATGTCATCAATGACACTGATATAACCGTGGTGTTCTGGGTTGACACTCGTGGGTCTTTCGGACGCGCGCGACTGGTCCGGAATGAATCAAACAAATACAACCAGCGAATTGGAGCTCAATGATGCCCACACATCGTGTCACAGACGACGTGACTGCTTTCGTGGTTACGGCCAAGGTCACCCGCACACCGTTTGGCATCGATGACGACGTGTTCGCTGCCTGGGTCGGCAACGAAAGCGATGAGCCGGGAGGCGAACTTCCCGACCCCAGTGATGGCTGTGCCGGTTCGGCCTTGTCGGACTTGGTCTATGAGGCGCTCAGTGCTGGTGTGCTCGTCGGTGACCCCGCGATCGAACTCAACGTCCACGATAGCGGTGCCGGATACCTCGTGCGACTCAATAATGCCGCTGGCCGCCAGCAGTTGGTCGGCCTGACCAGAGGATGGCACGAACTGCACTGGCCACCAAAAGATCTCACCCCTAGTGAACACGCACGCTACTACCTGCAGCAAGTCTGCGATGTCGCCAACGCGCTACTCAACGACTCGCTAGATCCGCTTCGACTTCCCGCATGATGACATCATGCCTGGGTCTAAATCATCGGAGTCGCCAGACGTCTCGTTGCAAACTGCGAGCACGGCGGCCCCCTCGCCCGGGGGCACCGGCCAGCAACATTGGGCGAGGCTAGCCAAACATCGCTTACACCGGGAAGACCCAGTCGAATGGTTCCTTCTCGTTAGTTAGAGGCTGAGGTGTTGGCATTGTTGCCACCAGGGGTTCAGCGTGATGAGATCCCAACCGGGTGGGCCGTAGTGGGGTGCGCCGGTAAGAATCGTGTCACCAGCCGCGAACAAGCATTGGTGATGGGCGTGGTTTGCAGTGTAGCTTCCGCGCGTGACGAGGGACTTGGATCAGGACGGGCTGATCGACCGGTGGACGCTTGTCGGCGATGAGCTGGAGTTAGTTTCGGGCAAGCAGGGTGTAACCCGGTTGAAGCTTGCTCTGCTGCTGCGGTTTCTAAAAGTCCCAATCTGTTAACGAATTCCGGTACATGTCAGGCATGGTGAGCACACCAGCACACCCCGCCGACGGACTCGAACTCGGCTACGCCCGCGTCTCCACCAACAAGCAGAGTCTGGAACGTCACTCGACGCCCTCGCCAAGGCCGGACTACCCGAGGAACGGATCTACGTCGACAAGAGCACCGGCGCGACCGTCAACCCGGCCCGGCCTGACCAAACTGCTCGAGTACGCACGCCCCGGCGACACCATCGTGACCTACACCCTCGACCGGCTCGGCCGGAACCTTCGCGAAGTGCTGAATCTCGTCCACGACCTCAACGAGAAGAAGATCGGTATGCGTACGCTGGCCGACCGATAACTTCAGTTAGACATGTAAGTGAGGCTAAGCTGGGGCAATGACTTCACTTCGCCCCGTCACCTACGAGAACGTTCGTTGGAAACCACAGGGGAGGCGGTACGCGAGCGCGGCGCTGCCCAAGTACGGCACCTACCACCCCGCTGTGCCGGCTAACATTGCTGACCTGGTCCTGGACTTGCCACCGCCCGTGTTCGCAGACGCCGAGTCCGCAAGCCACGAGATCATACGTTTCGATGCCGAACTCGGAGGCGACATCGCACCGTTTGCCGCCGTATTGCTGCGGTCGGAATCTGCCGCAAGCTCGCAGATCGAGAACTTGACTGCATCAGCCCGCGCTATCGCCGAGGCCGAGCTGCCCGGTGGCAAGGCCAAGCGCAACGCTGAGATGATCGTCGCCAACACCGCTGCGATGCAAGCAGCGGTCGCCCTGTCCGACACCGTTGATGCCGACGCCATTCTGGCGATACACCGCGCGTTGACGGTCAACGAGCCACGCCATACGCCAGGAGAATTCCGCACCGAGCCAGTGTGGATCGGCGGCGGCTCCACCCCCATCGGCGCAACATTCGTCGGCCCGCGCCACGGAGTGGTCCCCGGCGCGATTGGCGACCTAATCGCCTTCGCACAGCGCACCGACGTTCCCACGCTGCCGCAGATCGCGGTGGGCCATGCACAGTTCGAGACCATTCACCCCTTCACCGACGGGAACGGGCGCACGGGACGCGCATTGGTACAAGCCATGCTGCGCAACAAAGGCCTGACCCGCCAGGTGACGGTGCCGGTCTCGGCCGGGCTGCTTGCCGACACAGGCGCTTACTTCGCCGCACTGACCACCTACCGCGATGGTGACGCCGGGCCGATTGTCGAGTGCTTCTCGCAGGCCAGCGTCCTGGCTATCGCGAACGGACGTCAACTGGTCGCCGACCTTCACGGTATTCGGGAGACCTGGAACGGCGTGATCACCGCGCGGTCCGACTCGGCGGTGTGGAAGGTCGCGGATTTGTTGACTCGCCGTCCGGTCGTGAACGCTGCGCTACTGGCGCAGGAGCTGGGCATCGAGTCCACCAACGCGCACCGCTACCTCAACCCGCTCACCGAGGCGGGAATCCTCGTTGAGACGACCAGTGGACCCCGCAACCGAGTGTGGCGTTCCCCTGAAGTGCTCGCCGCGCTCGACGCGTTCGCCGAGCGGGCCGGGCGGCGAGGCTGATCGCCGTTTTCGTGGGCGGGGTCAACTGAGCTGACCCACGCCCACCACTCGGCGGCACAGGTTTATGAGCGGTCGACGTGCCGGCTCTGGTCACTGACCGGAAGCGGCGAGATGTCTTCAGCAGCCATGTCGAGCACGCGGATCTCCCCCGCGCTGCCGTCGATCTCGACAAGCGCACCGGGCGGGAGACGGCGAGTGGCGCCCTGGACGTCAACCACACAGGGGAACCCGAACTCGCGGGCCACCACGGCGGCGTGTGACATTGGACCGCCGAGCTCGGTTACCACAGCCGCGGCGTAGCAGAAGGCCGCGGTGTAGCCGACATCGGTGACCTCGGCGACCAGAATCTCGCCGGGTTGCAGGTCGTCGATGGTCTCGGGCCGCACGATCCGCACCCGGCCGCGGACCCGTCCGCCGCAGACTCCGACACCGCGCAGCGTGTCCCCGACGCCCAACGAGCTCGACGACGTGGTCGATGGCTGCCAGCTGCCGCTGAATACTGTCGGCGGAACGATGGCTGCCAACCTGTGTTGTTCGGCTCGGCGTCGGCCAACCAGTCCCGCAACGTCCGCCGGCAGTCGGTCAAGTTCGTCGAGCTCGTCGACCAATAGGTAGAACACGTCATCGGCGGTGCCGAAAACACCGGCGTCGGTCAGCCGGCGCCCATACTCACGCAGCAGACCGCGCAGCACCCAGATGGCGCGCACCATTTTGTCGCGGCGGACTTCGCGGTCGCGGAGTTGGCGCGCGGCCAGCAACGCAACAGGTCTGGCCCGCAACGGAATCCGCGCATGCTGGGGCGGCGGCGCAGCAGGCGCGCTCAATGCCTTGGCCACCATGCGGACCAGCAATTCGGGATCGTCGGCGTAGCTGGTCGACAGCATCTCAACCTCGGCCGGACCTCGATGCCCGATCAGCGCCAGTTCGGCCAGTACCGCAGCATGAAACTCAGGAGCCTGGACAGCCAACACATCAAGGCGCTTGCCGAGTTCAGCCAGCAGGCGTGTTACGTTCGGGTCGCGCCGCGCCGCGCTGACCAGTCGTTGCACCGCCTCCACCGATCGCGCACTGACCAATTCCGGCCCAGCCTGTGGCGCGGCATCTCGCCCACACAGGCCCCGCAACAACACATTGAACGCAGCGCACAACATGAATGACCCCGAGGCCAACACCCAGCCGTGCACGACGTGATCACGTGCCAACAAGATCAAACTCAGTAACCGGCGATCGTCGAGTTGGGTGACATCAACGCCGGCAAGATGTTCCAGACGATCGACATCATCGATGTAGTCGCGGGTGTCTCGGGGTGAACCGGCGCTCAGGCCAATGAGGTTGCCGCCGAAGACCCCGATGTTGCGGAGGGTACGCAGCTGCTTTCGGACTCGGCTGGATTCAGAAGGCGGACGTTGCGCACCGAAGATCGGCAACGACGCCATGCTGGGCCCAAAGAATCCACTGTTGCTGATGATGGTTGCGGGTTTCGCGAATGGAACGGTTTCGGCCATGAAATGCCCCGACGTGATGCCCCCATACAGCCGGTGGGCGAACACCGCGACGGTGCGCATGGCGATTTCCCGCTGAATCACGCCACCGGGCCGCAATCGTTCGGCAATGCCCACGCCGCCGGCGCGCAGGCCACGCACGGTCACGGACGCCGACGACGGCGAGAACGGGCCGGGCAGGGCCTCGGACAAATTGGTGGCCAGGAAGGTTGGGAAACGCGGGTCGATTGGGGTGTCGAATTCGCCGTTATCTCCTTCTGGGCCAACAAATCTAGGCACCACCCCGTCTTCAGACGGCACGTCGACGGCAGGCAAGTCCTGGATATTGGCCAATCGCCAGGGCACTGACACCAGCCGCTCACCCAACGAAACCCGGCCGCGCACCGCCAATGCGAAGTCGTCGACACATTCATCGGCGTTCCAGGCCGGCACGAATCCCCACTCGTCGCGCAGCCGTGAAGTATCCATCAATGGTGCGCTCTGCAGGAGTTCTAGCTCGGCCAATAAGCTGAGGCGTCGCAGTACCGTCAACCGCGAGCCCAGCGGCACGATCGGCCGCCTGAGTGTGGCGGCGATCTGACGAAGCGTCGTCTCACCCGGTGCCGCGAGATTGACTGGGCCGCTATCGATCTCGGTGTCCATGATCGCGCGGATGAACAACCGAAGCGCATCGCCGGTGTGGATCACCTGCAGGGCGCGATCGGCGCCGATGTCGGGAATCATCGGCAAGGCCAGCACCCGACGCACCCAGTTGTCAACTCCTCGGCCGACGACTAGCGCCGAGCGGACCGCAACCCATTGCACGCCGGAGGCCGCCAGCATCTCCTCAACGCGGGCCTTGTGGAGGCCGTCGGTACTGGCCGATGTCATCGCATCGTCCTCGGTTGCCGGCGCCGTTGCCGCACCATAGACGTGCGCCGAGGAAGCGAAAACGATGCGTCTGGCTCCTGTCTTGGCCATCGCGTCCAGGACGTTGCGTGCACCCTCGATATTGACCTGGTCCTGTGGGCGGCGCGCCCAGGCGCAGTGCGCGACGACGTCCGCGCCGCTGACGGCACGCCCAACCGCGACCGCGTCCCGGATGTCCGCTGCGACGAAACCGGCTGCACTCGACCAGCTTTCGGGCCGGTGACGAGCAATCCCCACGACATCGTGGCCCTGGCTGAGCAGTCTGGCTGCCAGGCCGCGGCCGAGCACTCCGCTTGCCCCAGTGACCGCGATTCTCACTGTTGCTGCCTAATCGTCATCGTTCATGAAGGCCGCGTTGACCAGGTCATCGAGGTCCATGTCCGCGATGTCTTTTTCCGTGGTCTGCTCGCCGACCGGGACCTGCCCGTTGCCGTCGGCGTCATTGGCCAACCCGAGCAACAGGTCCAACACTCCCGCCTGTCGAAGACGCTTGACCGGAATGGACGCCACGACCCGCTGGATTTCGGCTTCCCCGGGCGCCGCGGCCGGGGTGCCGTGCTGCACGGCACCGACGAGTTCTCGGCGCATGTAGCCGGCCAGCGCGGCCGAGTTCGGGTAGTCGAAGATGAGCGTCGGTGACAGCGATAGACCGGTGGCGGCTTTGAGCCGGTTGCGCATTTCGACCGCGGTCAGCGAGTCAAAGCCCAACTCCTGGAACGCCTTGTCGGGGTCGATCGCCTCGGGGCTGGAGTTGCCCAGCACGGTGGCGATATGAGAACGCACCAGATCCAACAGAACCGCGTGTTGCTCGTCTTCGGACAGCCCTTCCAGGCGTTGCAGTAGAACCGATTTCGACTTCGCCGCAGCTAGCGAGTCGTCGACCTGTCGCCGAGTCGGCGCGTTGATCAAGTCGACGAACATCGGAGGCAGCGTGCCCCCATCGAACTTGGCCCGTAACGCGGCAAAGTCGATGTAGGCAGGCAGCAGGAATGGTTGGTCGACAATCATCGCGGTATCCATCAATTCCAGCGCCTGATCCGAGGACATCGCGACAATTCCGTCCCGACCGAAGCGGGCCCGGTCGGCGACACCCAGTCCCCCGGTCATCGCGCTGGCCTGATCCCACAGACCCCACCCCAGCGACATCGCCGGCAGCCCATGGGCCCGCCGATGCACAGCCAGCCCATCAAGGAACGAGTTAGCCGCCGCGTAGTTGCCCTGACCCGACGAACCCACCAACCCGGCCATCGACGAAAACATGACAAACGCCGACACATCCAAGTCGCGGGTCAACTCATGCAGGTTCCAGGCCGCATCCACCTTGGCCCGCAACACCACATCCACCCGCTCCGGCGTCAACGACGAAATCACCGCATCGTCAAGCACCCCGGCCGCATGGATCACCGCCGACAACGGCCGCTGCACTCCGATATCGGCAATCACCTTGGCCAATGCCGCCCGATCCGCGGCATCACACGCCACCACCTGCACCTCGGCACCGGACGCGCTCAGCTCAGCCACCAGTTCCGCGGCGCCCGGGGCGTCCGGACCGCGCCGACTCACCACCACCAGATGACGTGCCCCATGACGCGCCACCACGTGGCGAGCCAGCGCCGAACCCGCCATCCCGGTCCCGCCGGTGATCAACACGGTGCCCGCCGTCCACGCATCCGGCATCGTCATCACGACCTTGCCGACGTGGCGCGCTTGACTCAAATACCGTAACGCGGCGGGCGCACGTCGCACGTCAAACGTTGTCGCCGGCAACGGCCGCAGCACCTCGTCGTCAAATAGCGCGGCCAATTCGGCGAGCATCTGCGCAATGCGCTCTGGCCCGGCTTCGAAGAGGTCGAAAGCACGGTAGCGCACACCGGTGTGCTGTTGGGCGACCACTGCTGGATCACGGATATCGGTCTTACCCATCTCCAAAAACACCCCACCGGGGGCAACCAGACGCAACGATGCGTCCACGAAATCACCGGCCAACGAGTCCAACACCACATCCATGCCGCGCCCGCCGGTAACCTCCCGGAACTTGTCCTCGAACTCAAGGCTTCGCGAATCAGAAATGTGATCCTCGTCAAAGCCCATGGCCCGCAAGGTGTCCCACTTACCTCGGCTAGCGGTCGCGAACACCTCCAACCCCAAATGCCGAGCCAACTGCACCGCCGCCATCCCCACCCCACCAGTGGCGGCATGCACCAACAACCGCTGCCCTGACTTCATGGCGGCCAAGTCCATCAGCGCGTAATAAGCGGTGGCGAAAACCACCGAAGTGGTCGCCGCGGCGGTGAATGACCATCCCGTCGGCATCTTGACCAGCAGCCGCTGGTCGGTAATCGCGATCGTTCCGGTGCCCTCGGGGAACAGGCCCATCACCCGGTCGCCGACCGCGAAACGCCCATCGTTAGAGGCGGTTTCGGAGCCAGTTTCCGGGCCAGTTTGCAAGACGACGCCCGACGCCTCGACACCCATGACCGCATTCTCGTCGGGATACAGACCCAACGCGATCATGACGTCGCGGAAGTTGGCGGCGATGGCCGACAAAGCAACCCGGACTTGCCCGGGCTGCAGCGGCGCATCAGCGTCGGGAATCCGCTCCAGCCGCAGATTCTCTAGGGTGCCCGAACTGCTCATACCCAACCGCCAGGGGCCGTCCCCGGGCGGCACCAAGACACCATTAACTGTGCGGCTGCCATGCACTCTGGCGGTATGCACCGTTTTACCGCGCAGCAGCACTTGCGGTTCGCCGGCTGCCAAGGCCGCAGCTACCGCCTCAGCAGCTAGATCTCCCAGGGGGATATCAGTGTCGACAAGCACAATCCGGCCGGGATGCTCGGTCTGCGCCGACCGCACCAACCCCCACACCGCCGCGCCCGCTAAGTCGGTGACGTCCTCCCCCGGCAACGCGACGGCGCCCCGGGTCACCACCACCAACGTCGCCACCCCGTCGGAGGCCAACCATGACTGCAATACTCCGAGCACGGACCGGGTAGCGGCGTATACCTCCGCCACGACATCACTGGCGACTGGCACCGACTCGAACAGTAGTGCCGTCGGCGTAGCTTCGCTGGCGTCTGCCTCCCCCAAAGCCATGGCGCCCCAAGCACACACCGACACCGGTGTTGGCGTGGTTGCGGGCTGCGGCGACCAGACCACCTCAAAGAGCCGGTCTGGACCCGAGTTCGACACCGCGGCCAGTAACTGCTGATCGGTCACCGGCCGGGCCACCATCGAAGCTACCGAGAGCACTGGCAAGCCCAGTCCGTCCGCCAACTCGATCGACGCTGCCGACGGACCCACCGGAACGATTCGTGCTCGTACTGCCGCCGCGCCCGCGGCATGCAACGACACTTGCTGCCAGGAGAACGGCACCAGCACCGAACCCTCGGCAAGCTCGGCACTATCGGATGCCAGCATTACCGCGTGCAGTGCTGCGTCCAGCAGCACCGGGTGAATCCCGAAGCCGGCCACTGATACCCCAGCATCGGCGGGCAACGTCACCTCGGCGAACACTTCATCGCCGCGCCGCCACATCGCGGTTAAGCCTCGGAAGGCAGGACCATAGCCGTAGCCACGCTCGGCCAGACGCTGGTATCCGTCGCCGAGGTCCAGCGGGACCGCTCCCACCGGCGGCCACACCGACAAATCCGCAGTCGGCGCGGGCGACCCGGCTCGCAGTACGCCTTCGGCATGCAAACGCCAGGCCGATCCAGTATCGGCACGCGAAAACACCGACACGGCACGGGTACCCGAGTCATCCGCGCCGCCGACCACCACCTGCACCGCCACCGACCCTGAGTCCGGCAGGACCAGCGGGGCCGCCAGATTCAGCTCGTCGACGACACCGCAGCCCACTTCGTCACCGGCGCGAATCGCCAACTCGACAAATCCCGCCCCGGGGAACAGCACCACGCCGCCAACGGCATGGTCGGCCAACCACCCCTGCACGCGGGGCGATAACCGACCGGTCAGCACCACGCCGCCTGAGGCGGGCAGCTCCACCACCGCGCCCAGCAACGCATGTTCGCTGGCTTCCAGTCCCAAACCGGCGGCGTCAGCCGTTGCGCCGTCGCCGGCAAGCCAAAAACGCCGCCGCTCAAAGGCATACGTGGGCAATTCTACGAAGTTGGCCTGGCCCAGCACCGCGCGCCAATTCACGTCCATGCCCGAGACGAACCCTTGCGCGACGGCGTTGATCAGCGTTGCCGGCTCGGGGCGGTCCTTGCGCAGTGCAGACATCGTGATCACCCGTGCATCGGACAGCAACTCTTCGATCGATGCGGTCAGGCCGCTACTAGGCCCCACTTCGAGGAAGCGATTTCCGCCTGCCGAGTGCACGAATCGGATACTGTCGGCGAATCGCACCGCTTCTCGAACGTGCCGTTTCCAATATGCCGCTGACGCGAAGTCGTCGCCGGCTAGCTGCCCAGTCACATTCGACACGATGGGGATGGTGGGCCGCCCGATCGCGAGCCCGGCAGCGACCGCTCCGAATTCGTCGATCATCGGGTCCATCAACGGGGAATGGAACGCGTGGGAGACGGCCAGTTGGTGCAGTCGGTGGCCAGTGGCGCGGAGTTCGTCCGCCACCGCGGCCACAGCATCCTGGGCGCCCGAAATCACCACCGAGGCTGGCCCGTTGACCGCCGCGATACCCACTTCGGCGCTCAGCAGCGGCCGCACCTGCTCTTCGGCGGCCTGCACGGCGATCATCGCCCCGCCTACCGGCAGATCCTGCATGAACCGGCCGCGGGCGGCCACTAGCACCGCGGCGTTCTCCAGTGAGAGCACACCTGCCACGTGCGCGGCGGACAACTCACCCACCGAATGACCCATCACGAAATCGGGACGCACACCCCAGGATTCCAGCAACCGGAACAAGGCCACTTCCACAGCGAACAACGCCGGCTGCGCGAATTCAGTTGTGTTCAAAAGATTTTTGTCATGGCCCCACATGACTTCGCGCAGTGGCCGCAGCAGGTGCCGGTCCAGTTCGCCCACCACGGTGTTAAACGCCTCGGCGAACACCGGGTATCCAGCGTGCAATCCCATTCCCATGCCCAGCAATTGGGAGCCTTGGCCGGGGAAGACGAATACCGTCTTGCCCCCGGGTGTTGCCGTACCCCGTACGACCGACCCGACTTCATCAGTGGCCAACTTGTCTAACCCGGCCAGCAACCGGTCTCGATCAGCCGCCACCACGACGGCACGATGCTCAAAGGCCGATCGACCCGCCAACGACCACCCCACATCGGCAACATCAAGCTCACCATGAGCCCGCACATACTCGGCCAACCGAGCCGCCTGAGCACCCAACGCCGCCGCCGATTTCGCCGACACCACCCACGGCACCACCGGCACTTGAGGACGCTCCATAACGCGCTCGCACTCGACGGGTGCAGCCTCGATGATCACATGCGCATTGGTGCCACTAATCCCAAACGACGACACCCCGGCCCGGCGGATGTGGCCATTCGCCGGCCAGGGTTGCGTTTCGGTCAATAACGCCACCGACCCCGCCGACCAATCCACATGCGGACTCGGCACATCGACATGCAACGTCGCCGGCAACACCTCATGGCGCATCGCCTGCACCATCTTGATCACACCAGCCACCCCCGCAGCAGCCTGCGTGTGACCCATATTCGACTTAATCGACCCCAACCACAAAGGCTCACCCGAACCGCGGCCTTGCCCATAGGTCGCCAACAACGCCTGAGCCTCAATCGGATCACCCAACGTGGTGCCAGTCCCGTGGCCCTCCACCACGTCCACATCCGCCGCGCTCAGACCCGCATTGGCCAACGCCGCACGCACCACCCGCTGCTGCGACGGACCATTCGGCGCCGTCAACCCATTCGACGCACCATCCTGATTAACCGCGCTGCCCCGCACCACCGCCAACACCGGATGCCCCAACCGCTGCGCATCCGACAAACGCTCCACCACCAACATGCCGCCGCCCTCGGAGAACCCGGTGCCGTCGGCTGCCCCGGCGAATGCCTTGCAGCGTCCGTCCGGCGACAAGCCGCGCCAGCGGCTGAATTCCACGAAGATGTCGGGTGTGGCATTGATGGTGACGCCGCCGGCCAGCGCCAAATCGCACTCACCCGAGCGCAACGACTGCACCGCCATATGCAACGCCACCAACGACGACGAACACGCCGTATCCACCGACACCGCCGGGCCCTCCAACCCCAGCACATACGACACCCGCCCGGAGGCCACGCTCGATAGCTGACCGGTCAACCGGAAGCCTTCCACTGGCTCTGCGGCAAACATGCCGTAGCCCTGGGTCATCACCCCGGCGAACACCCCGGTGGCACTGCCCCGCAACCCCGCAGGATCAATCCCCGCCCGCTCCAACGCTTCCCACGAGAGCTCCAGAAACATGCGTTGCTGGGGGTCCATCGCCAGCGCCTCACTGGGCCCGACCCCGAAGAAAGCAGGGTCGAAGTCCGCCACACCGTCTACGAACCCGCCGGTGCGGGTGTAGCAAGCGCCCGGAACATCGGGATCCGAGTTGAATAACTCGGCCAGGCTCCAGCCGCGATCAGCCGGAAATTCGGTGAGCACATCACGTCCCTCGACCAACATGTCCCAAAGGTCGTCAGGAGAGTTCACCCCCCCGGGATAGCGGCACGACATACCAACGATCGCGATCGGATCGTCGGTGGCGGCGCGAACCGCGGGTGTGTGCTTGATTTCTTGTGGGATGCCGGCAAGTTCGGCGCGCATGTACTTGGCCAGTCCACTGGGGGTTGGGTAGTCGAAGATAAGGGTGGGTGAAAGCGATAGACCAGTGGCGGCTTTGAGCCGGTTGCGCATTTCGACCGCGGTCAGCGAATCGAAGCCCAACTCCTGGAATGCCTTGTCCGGATCGATGGCTTCGGGCGTGGTGTTACCTAACACGGTGGCGATGTGGGATCGCACCAGGTCCACCAGGACGGCGTGCTGTTCGGCTTCGGGCAGCCCGTGCAGGCGGTGCGCCAAAGCCGATTTCGATTTCGCGGCGGCCAGCGAATCGTCGACCTGCCGCCGGGTCGGTACATTGAGCAGATCGCTGAAAATTGGCGGCACCGCATCGGCGTGGGCCCGCAGTGCGGTGAGATCGATACGGACGGGCGCGACGAATGGCTTGTCGACAATTATTGCCGTATCGAATAGTTCGAGCGCTTCTTCCGTAGACAAGGCCAGGATACCGTCGCGGCCCAGCCGCGCTCGGTCGGCGGCGTCCATGCCGCCCGTCATGGCGCTGGCCTGATCCCACAACCCCCACCCGAGCGAGATCGCCGGCAACCCGTGGGCGCGCCGATGCGCGGCCAACCCATCGAGGAAGGTGTTGGCCGCCGCGTAATTGGCCTGGCCTGGGGAACCCACCAACCCGGCCATCGACGAGAACATGACAAACGCCGACACATCCAGATCGCGGGTTAACTGGTGCAGGTTCCAGGCCGCCTCCACCTTGGCCTGCAACACGCCATCTAGCCGTTCGGGAGTCAACGACGTCACCATCGCGTCATCGAGTACCCCGGCGGCATGAATCACCGCCGACAACGGATGCTGCACTGCGATATCGGCAATCACGTTCGCCAACGCTTCCCGGTCCGCCGCATCGCAGGCCACCACCTGCACCTGCGCACCAGCCGCGCCCAACTCGGCCACCAGCTCCGCGGCACCCGGGGCGTCCGTACCGCGCCGACTCACCAACAGCAGATGACGCACCCCGTGACGCGCCACCACGTGGCGAGCCAGCGCCGAACCCGCCATCCCAGTACCGCCGGTGACCAACACCGTGCCCGCCGCCCATGCGTCCGGCATCATCATCACGACCTTGCCGACATGACGTGCCTGGCTCAAATAGCGCAACGCGGCGGGCGCCCGCCGCACATCAAATGTCGTTACTGGCAATGGCCGCAACACTCCAGCGTCAAACAGCTCCGCGAGTTCAGCCATGTACTGCTGCATCCGGGGTCGGAGCTCGAATAGGTCGAAGGCGCGGTAACGCACGCCGGGGTATTCCTCGGCGATGACACCGGGATCGCGGATATCGGTCTTGCCCATCTCTAAAAACGCCCCACCGGGGGCAACCAGACGCAACGATGCGTCCACGAAATCACCGGCCAGCGAGTCCAGCACCACATCCATGCCGCGCCCGCCGGTAACCTCGCGGAACTTGTCCTCGAACTCCAGGCTCCGCGAATCAGAGATGTGATCGTCGTCAAAGCCCATGGCCCGCAAGGTGTCCCACTTACCTCGGCTGGCGGTGGCGAAAACCTCCAACCCGCGATGCCGTGCCAACTGCACCGCCGCCATCCCCACCCCACCGGTGGCGGCATGCACCAACACCCGCTGTCCCGGCTTGTCGTCGGCCAGGTGCACAAAGGCGTAATACGCAGTGGCGCAAACCACTGACATACCGGCGGCTTCTGCGTCCGACCAGTCAGCGGGCACTGGCAGTAGCAGCCGGACGTCGGCGGCGACTAGCGTACCGGTACCTTCCGGAAAGAGCCCCATCACCCGGTCACCGACGGCGAACTCGGTAACTCCCGGGCCGACTTCCACCACCACGCCGGCTGCTTCACTGCCGAGCAGCGCGTCATGGGGGAACATGCCGAGAGTGATCATGACGTCGCGGAAGTTCGCGCCAATCGCGCGGACGGCTACCCGAACCTGGCCTGGCCCCAACGGCGCGTCAGCGTTGGGAACCGGCTCCAGCTGCAGATTCTCAAAGGTGCCGGCACTACGGATACCTAACCGCCAGGGCCCGTCACCCGGCGGCACCAAGACGCCGTCAACCGCGCGGCTGCCATGCACCCGCGCGACATACACTTGTCCGCTCCGCAGCAGCACCTGCGGCTCGCCGGCCGCCAAGGCCAGGGCGACTGCCGCATCGTCGAGTGGCGCCTCGGAATCAACGAGTAGGAGCCGGCCGGGATGCTCAGACTGGGCCGATCGCACCAGCCCCCATACCGCGGCGCCGGCTAAATCGGCGACCTCCTCCCCCGCCAATCCCATTGCGCCGCGGGTAGCGACCACCAATACTCCAGAGTCACGCTCGGTCAACCACGACTGCACGGCTGCCAACGCCTGGCGCGTGCGCTCATGGGTGGCAGTCACCGGATCTTCGTCAGCTGCAACAGATTCGAACAGTTCGTACGACGGTGTCAGGTTTGAACCCGCCGATGTGGTTGGTGTCGCCGGTGACCAGACCACCTCAAACAGCCGGTCGGGGCCCGAGCCCGACACTGCGGCCCGCAATTGCTGTTCGCTCACCGGGCGGGCTGCCAGCGAAGCCACCGAGAGTACCGGCAGCCCTAACCCGTCGGCCAACTCGATTGACACCGCTGAAGTTCCGACCGGACCCGCCGGCGCAATCCGCGCCCGGACCGCCGACGCACCAGCGGCATGCAACGAAACACCCTGCCAGGAGAACGGCAATACCAGTTCCGCCGTCTGATTGGCCATGAGTACGGCATGCAGGGCCGCATCTAGTAATGCCGGGTGCACGCCGAACCCGCGGATACCGCCGGCGGCATCGGGCAGCTTCACTTCGGCGAACAGCTCGTCGCCGCGGGCCCACATCGCGGTCAGGCCGCGAAATGCCGGACCGTAGCCGTATCCACGAGCCGCCAACCGCTCATAGCCGTCCGTCGTGTCCACCGCGACCGCTCCCGCTGGTGGCCACACCGACATGTCCACGCTCGGTTCGACCGACCCCGAGCTCAACGCGCCCTCAGCGTGGCATACCCACCCGGAACCGGCGTCGGTCCGCGAAAAGATCGAAATACTGCGGTGACCTGATTCTCCCCCGCAAGCGGGAGGTGCCCCCACGGCAGGACCCACGACTACTTGCATCGCAACCGCGCCCAGCCCAGAATTCCCGGACGGCAACAGCAATGGCGCCTGGAACGTCAGCTCGTCGACCACCGAACAGCCGACTTCGTCGCCGGCGCGAATCGCCAGCTCCAGAAACGCCGCGGCCGGGAACATCGCCACACCGGATACGGCGTGGTCAGCCAACCAACCCTGCATACTGGGCGCCAATCGACCCGTCAGCACCACCCCACCCGAGGCCGGCAGCTCCACCACCGCGCCCAACAGCGGGTGCTCACTAGTGGCCAGCCCTAAGTCGGCAGCATCGGCTCCTACACCATCGCCAGAGAGCCAAAACCGCCGCCGCTCAAAGGCATACGTCGGCAACTCGACGAAGCCAGCCCCGTCCAACGCAGCACGCCAATCCACGCTCACGCCCGCAACGAACGCGGCCGCGGCCGACGTCAGGAACCGCTCCAGTCCGCCATCTTCACGACCCAACGTGGGAACAACGACAGGCTCGGTGTCCCCGCCGACGCAATCGTTGGCGGTGTCCTCGATTCCGGCGATCAGGACGGGATGTGGACTGGATTCGATGAATGTGCGGTAGCCGTGCTCACATGCGCTGCGCACCGCCTGGTCAAATTCTACGGTCTGCCGAATGTTGCAATACCAGTAGTCAGCGTCTAAATCCGCTGTGTCCAAACGACATCCAGTCACCGTCGAGAAGAAGGCGATACGCGAGGACCGTGACTCGATGCCGGCCAAAGCAACAGCGAGGTCACCGCGAATGGCCTCAACCTCAACCGAATGCGACGCGTAGTCCACGTCGATGCGGCGGGTGCGCAGATCCTGATCGGTACAGTGCTGGACTAATTCCGCTAGAGCGGCCACTTCACCCGACACCACAACCGCCGACGGGCCATTGACGGCGGCAATGCTGATCCGATTGCCAAAGGGCGCCAGCAACTCCCGTGCCTGCCGGGCCTCGCATGCAATGGCTACCATGCCGCCCGGATCGGCCAGCCCGGTCAGCAGTTTACTGCGTAGTGTGACCACCTTTGCGGCATCTCGCAAGGACAGCGCACCGGCGATGTACGCGGCGGCGATTTCACCCTGAGAATGGCCGATCACCGCATCTGGACGTACCCCGACCGATTTCCATAGTTCAGCCAGCGACACCATCACCGCGAACAGCACCGGCTGCACCACGTCCACCCGATCCAGACCCGGAGCGCCCGGCACGCCACGAAGGACGTCGGTCAGCGACCAGTCCACAAACTCCGAGAAGGCGTCCGCACAGGCTTCGACCTTTTGTGCGAATACCGGTGCGGTGTCGAGTAATTCGATGCCCATGCCGAGCCATTGAGAGCCTTGGCCGGGGAAGACGAACACCGTCTTGCCCCCAGGTGTAGCGGAACCCCGAATAGCCGACATGGGCTCATCAGCGGCCAACTCATCCAACCCGGCCAGCAACCGGTCCCGATCACCACCAACCACCACCGCCCGATGCTCAAACGTCGAACGACCCGCCAGCGTCCACCCCACATCGGCAACACCAAGCTCACCATGAGCCCGCACATGCGCCGCCAACCGAGCCGCCTGAGCACCCAACGCCGCCGCCGATTTCGCCGACACCACCCACGGCACCACCGGCACTTGAGGACGCTCCACAACGCGCTCGCACTCGACGGGTGCAGCCTCGATGATCACATGCGCATTAGTGCCACTAATCCCAAACGACGACACCCCGGCCCGGCGCACCTGACCGTTATCCTTCCAAGGCCGCGCCTCGGTCAACAACGCCACCGACCCCGCCGACCAATCCACATGCGGACTCGGCACATCGACATGCAACGTCGCCGGCAACACCTCATGGCGCATCGCCTGCACCATCTTGATCACACCAGCCACCCCCGCAGCAGCCTGCGTGTGACCCATATTCGACTTAATCGACCCCAACCACAAAGGCTCACCCGAACCGCGGCCTTGCCCATAAGTCGCCAACAACGCCTGAGCCTCAATCGGATCACCCAACGTCGTCCCAGTCCCGTGGCCCTCCACCACATCAACCTCGACCGCCGACAACCCCGCATGAGCCAACGCCGCACGCACCACCCGCTGCTGCGACGGACCATTCGGCGCCGTCAACCCATTCGACGCCCCATCCTGATTCACCGCGCTGCCCCGCACCACCGCCAACACCGGATGCCCCAACCGCCGCGCATCCGACAAACGCTCCACCACCAACATGGCGCCGCCCTCAGACCAGCCGACGCCGTCGGCCGCCCCGGCGTACGGCTTGCACCGGCCATCCGGCGCCAGCCCGCGGTGCCGGCTGAATTCCACAAAGACCGTCGGTGTGGCGTTGACGGTCGCGCCGCCGGCCAGCGCCAAATCGCACTCACCCGAACGCAGCGACTGCACCGCCATATGCAACGCCACCAACGACGACGAACACGCCGTATCCACCGACACCGCCGGGCCCTCCAACCCCAGCACATACGACACCCGACCCGACGCCACGCTGGAGGTCATGCCGGTCAACCGGTAGCCTTCGATCTCCTCGGCGAGCATCCCGTAGCCCTGGACAATGAGCCCGGCGAACACCCCGGTGGCACTGCCCCGCAACCCCGCAGGATCAATCCCCGCCCGCTCCAACGCTTCCCACGAGAGCTCCAGCAGCATCCGGTGCTGGGGGTCCATCGCCAGCGCCTCACTGGGCGCGATGCCAAAGAACCCGGGGTCGAAGTCGGCAACCCCGTCCACGAAACCGCCGGTACGCGCGTACGACTTGTGCCGTACGTCGGGGTCCGGGTCGAATAACCCGTCCAGATCCCAGCCGCGATCGGTCGGAAACTCTGACATCACATCCCGGCCCTCGGCGACCATCTGCCACAGGGCCTCCGGGGAATCCACCCCACCGGGAAATCGGCACGACATGCCCACGATCGCGATCGGCTCATTCGACCGCTCCAGCAACGCCCGGTTGGTGCGCTTTAGGCGTTCAACCTGGACCAGCGCTTTGCGCAACGCTTCAGTCGCATGCTGGAGTTGATCAACCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP011883|2422578:2445111|2426004_2426502_-|WP_054879899.1|DBSCAN-SWA
MAVSNADMLALARELPIPVPWDRNVFIDNLARQRRRPIRLMPSDTSAFTEGPCGLWLIFDDEDVILYDAGTSDYHIDQIVCHEVGHMVLGHRSHQGSTDKTPKLELFSKMLPDLDLTTIQNVLGRKSFADDQELDAENFAHTLMCASAKAGAEKSVMRSVFFRSR
>NZ_CP011883|2422578:2445111|2432553_2445111_-|WP_054879895.1|DBSCAN-SWA
MVDQLQHATEALRKALVQVERLKRTNRALLERSNEPIAIVGMSCRFPGGVDSPEALWQMVAEGRDVMSEFPTDRGWDLDGLFDPDPDVRHKSYARTGGFVDGVADFDPGFFGIAPSEALAMDPQHRMLLELSWEALERAGIDPAGLRGSATGVFAGLIVQGYGMLAEEIEGYRLTGMTSSVASGRVSYVLGLEGPAVSVDTACSSSLVALHMAVQSLRSGECDLALAGGATVNATPTVFVEFSRHRGLAPDGRCKPYAGAADGVGWSEGGAMLVVERLSDARRLGHPVLAVVRGSAVNQDGASNGLTAPNGPSQQRVVRAALAHAGLSAVEVDVVEGHGTGTTLGDPIEAQALLATYGQGRGSGEPLWLGSIKSNMGHTQAAAGVAGVIKMVQAMRHEVLPATLHVDVPSPHVDWSAGSVALLTEARPWKDNGQVRRAGVSSFGISGTNAHVIIEAAPVECERVVERPQVPVVPWVVSAKSAAALGAQAARLAAHVRAHGELGVADVGWTLAGRSTFEHRAVVVGGDRDRLLAGLDELAADEPMSAIRGSATPGGKTVFVFPGQGSQWLGMGIELLDTAPVFAQKVEACADAFSEFVDWSLTDVLRGVPGAPGLDRVDVVQPVLFAVMVSLAELWKSVGVRPDAVIGHSQGEIAAAYIAGALSLRDAAKVVTLRSKLLTGLADPGGMVAIACEARQARELLAPFGNRISIAAVNGPSAVVVSGEVAALAELVQHCTDQDLRTRRIDVDYASHSVEVEAIRGDLAVALAGIESRSSRIAFFSTVTGCRLDTADLDADYWYCNIRQTVEFDQAVRSACEHGYRTFIESSPHPVLIAGIEDTANDCVGGDTEPVVVPTLGREDGGLERFLTSAAAAFVAGVSVDWRAALDGAGFVELPTYAFERRRFWLSGDGVGADAADLGLATSEHPLLGAVVELPASGGVVLTGRLAPSMQGWLADHAVSGVAMFPAAAFLELAIRAGDEVGCSVVDELTFQAPLLLPSGNSGLGAVAMQVVVGPAVGAPPACGGESGHRSISIFSRTDAGSGWVCHAEGALSSGSVEPSVDMSVWPPAGAVAVDTTDGYERLAARGYGYGPAFRGLTAMWARGDELFAEVKLPDAAGGIRGFGVHPALLDAALHAVLMANQTAELVLPFSWQGVSLHAAGASAVRARIAPAGPVGTSAVSIELADGLGLPVLSVASLAARPVSEQQLRAAVSGSGPDRLFEVVWSPATPTTSAGSNLTPSYELFESVAADEDPVTATHERTRQALAAVQSWLTERDSGVLVVATRGAMGLAGEEVADLAGAAVWGLVRSAQSEHPGRLLLVDSEAPLDDAAVALALAAGEPQVLLRSGQVYVARVHGSRAVDGVLVPPGDGPWRLGIRSAGTFENLQLEPVPNADAPLGPGQVRVAVRAIGANFRDVMITLGMFPHDALLGSEAAGVVVEVGPGVTEFAVGDRVMGLFPEGTGTLVAADVRLLLPVPADWSDAEAAGMSVVCATAYYAFVHLADDKPGQRVLVHAATGGVGMAAVQLARHRGLEVFATASRGKWDTLRAMGFDDDHISDSRSLEFEDKFREVTGGRGMDVVLDSLAGDFVDASLRLVAPGGAFLEMGKTDIRDPGVIAEEYPGVRYRAFDLFELRPRMQQYMAELAELFDAGVLRPLPVTTFDVRRAPAALRYLSQARHVGKVVMMMPDAWAAGTVLVTGGTGMAGSALARHVVARHGVRHLLLVSRRGTDAPGAAELVAELGAAGAQVQVVACDAADREALANVIADIAVQHPLSAVIHAAGVLDDAMVTSLTPERLDGVLQAKVEAAWNLHQLTRDLDVSAFVMFSSMAGLVGSPGQANYAAANTFLDGLAAHRRAHGLPAISLGWGLWDQASAMTGGMDAADRARLGRDGILALSTEEALELFDTAIIVDKPFVAPVRIDLTALRAHADAVPPIFSDLLNVPTRRQVDDSLAAAKSKSALAHRLHGLPEAEQHAVLVDLVRSHIATVLGNTTPEAIDPDKAFQELGFDSLTAVEMRNRLKAATGLSLSPTLIFDYPTPSGLAKYMRAELAGIPQEIKHTPAVRAATDDPIAIVGMSCRYPGGVNSPDDLWDMLVEGRDVLTEFPADRGWSLAELFNSDPDVPGACYTRTGGFVDGVADFDPAFFGVGPSEALAMDPQQRMFLELSWEALERAGIDPAGLRGSATGVFAGVMTQGYGMFAAEPVEGFRLTGQLSSVASGRVSYVLGLEGPAVSVDTACSSSLVALHMAVQSLRSGECDLALAGGVTINATPDIFVEFSRWRGLSPDGRCKAFAGAADGTGFSEGGGMLVVERLSDAQRLGHPVLAVVRGSAVNQDGASNGLTAPNGPSQQRVVRAALANAGLSAADVDVVEGHGTGTTLGDPIEAQALLATYGQGRGSGEPLWLGSIKSNMGHTQAAAGVAGVIKMVQAMRHEVLPATLHVDVPSPHVDWSAGSVALLTETQPWPANGHIRRAGVSSFGISGTNAHVIIEAAPVECERVMERPQVPVVPWVVSAKSAAALGAQAARLAEYVRAHGELDVADVGWSLAGRSAFEHRAVVVAADRDRLLAGLDKLATDEVGSVVRGTATPGGKTVFVFPGQGSQLLGMGMGLHAGYPVFAEAFNTVVGELDRHLLRPLREVMWGHDKNLLNTTEFAQPALFAVEVALFRLLESWGVRPDFVMGHSVGELSAAHVAGVLSLENAAVLVAARGRFMQDLPVGGAMIAVQAAEEQVRPLLSAEVGIAAVNGPASVVISGAQDAVAAVADELRATGHRLHQLAVSHAFHSPLMDPMIDEFGAVAAGLAIGRPTIPIVSNVTGQLAGDDFASAAYWKRHVREAVRFADSIRFVHSAGGNRFLEVGPSSGLTASIEELLSDARVITMSALRKDRPEPATLINAVAQGFVSGMDVNWRAVLGQANFVELPTYAFERRRFWLAGDGATADAAGLGLEASEHALLGAVVELPASGGVVLTGRLSPRVQGWLADHAVGGVVLFPGAGFVELAIRAGDEVGCGVVDELNLAAPLVLPDSGSVAVQVVVGGADDSGTRAVSVFSRADTGSAWRLHAEGVLRAGSPAPTADLSVWPPVGAVPLDLGDGYQRLAERGYGYGPAFRGLTAMWRRGDEVFAEVTLPADAGVSVAGFGIHPVLLDAALHAVMLASDSAELAEGSVLVPFSWQQVSLHAAGAAAVRARIVPVGPSAASIELADGLGLPVLSVASMVARPVTDQQLLAAVSNSGPDRLFEVVWSPQPATTPTPVSVCAWGAMALGEADASEATPTALLFESVPVASDVVAEVYAATRSVLGVLQSWLASDGVATLVVVTRGAVALPGEDVTDLAGAAVWGLVRSAQTEHPGRIVLVDTDIPLGDLAAEAVAAALAAGEPQVLLRGKTVHTARVHGSRTVNGVLVPPGDGPWRLGMSSSGTLENLRLERIPDADAPLQPGQVRVALSAIAANFRDVMIALGLYPDENAVMGVEASGVVLQTGPETGSETASNDGRFAVGDRVMGLFPEGTGTIAITDQRLLVKMPTGWSFTAAATTSVVFATAYYALMDLAAMKSGQRLLVHAATGGVGMAAVQLARHLGLEVFATASRGKWDTLRAMGFDEDHISDSRSLEFEDKFREVTGGRGMDVVLDSLAGDFVDASLRLVAPGGVFLEMGKTDIRDPAVVAQQHTGVRYRAFDLFEAGPERIAQMLAELAALFDDEVLRPLPATTFDVRRAPAALRYLSQARHVGKVVMTMPDAWTAGTVLITGGTGMAGSALARHVVARHGARHLVVVSRRGPDAPGAAELVAELSASGAEVQVVACDAADRAALAKVIADIGVQRPLSAVIHAAGVLDDAVISSLTPERVDVVLRAKVDAAWNLHELTRDLDVSAFVMFSSMAGLVGSSGQGNYAAANSFLDGLAVHRRAHGLPAMSLGWGLWDQASAMTGGLGVADRARFGRDGIVAMSSDQALELMDTAMIVDQPFLLPAYIDFAALRAKFDGGTLPPMFVDLINAPTRRQVDDSLAAAKSKSVLLQRLEGLSEDEQHAVLLDLVRSHIATVLGNSSPEAIDPDKAFQELGFDSLTAVEMRNRLKAATGLSLSPTLIFDYPNSAALAGYMRRELVGAVQHGTPAAAPGEAEIQRVVASIPVKRLRQAGVLDLLLGLANDADGNGQVPVGEQTTEKDIADMDLDDLVNAAFMNDDD
>NZ_CP011883|2422578:2445111|2428118_2428262_+|WP_156406760.1|DBSCAN-SWA
MTRDLDQDGLIDRWTLVGDELELVSGKQGVTRLKLALLLRFLKVPIC
>NZ_CP011883|2422578:2445111|2426482_2426917_-|WP_054880950.1|DBSCAN-SWA
MAGKLNKLFEIMRKPSEPPLSNVAAAEAITRKTGVSISQAYMWQLRNGAKTNPTVQHLRAIADFFGVPASYLIDRDTDPKIDAQLGLLQALRDSGVRDLAMRASGLTPEAITSLATMVDEVRKLQQLPPIAPGGWSGLDGCIER
>NZ_CP011883|2422578:2445111|2422578_2424084_-|WP_054879901.1|DBSCAN-SWA
MHERTIRARTRAGTVEGFTRDGVHRWRSIPYAQPPLGHLRFRAPRPAQPWSGVRHCHGFANCAPQQRRYTMLGIGKYQPMGEDCLTLNVVTPEVASGEPLPVMVFIHGGGYILGSSATPLYDGAALARRGCVYVSVNYRLGALGCLDLSSLSGPDITIDSNLYLRDLVLALHWVKDNIAEFGGNPGCVTIFGESAGACIIATLLAVPAAEGLFTRAISESPASGMVRSKEIADEFATRFAKLLGVRAPDAGAALMQASPAQLVATQHRLIEQGMRKKLGAFPIGPVVGDDCLPLDPVEAMRTGRAHRVPLIVGTNAEEGRLFTRFLKMLPTNESMIEELLTDTEPAARERITAAYPDYPQRSACIQLGGDFAFSSAAWQIAEAHGNHAPTYMYRYDYAPRMLRWAGLGATHATELLAVFDIYRTRFGALLTAAADRHHALRVSNEVQRRWRCFGRTGVPGDDWPAYTRADRAVMVFDRKCRVEFDPHPHRRMAWDGFSLAR
>NZ_CP011883|2422578:2445111|2424793_2425906_-|WP_156406759.1|DBSCAN-SWA
MYLNNSIGLFLVCNLLREKTIEEFFARHHLMTVTTAQELSWVAIVLPCAEFMGFIALWSGLPPQETRHRQRYHRSAAIILSGAFLIAASRARAAGQILELAHGWDIVLAWFLWTIVLDVLGIQMMIMSVTEWRRTAKWQERLIAGCTVMVGGFGVMICIGSLCYKFFEQLSGVHNSHFVSFLIAVNSRYCFWQSLVLYALAAVPAVGTLRARAGLDGTSRAWHALQGLRETLTAVVPESVFEWKPASTSRQKTVLELHQTIIEIRDAILLLRPYFREISLEEEARFVDRYVVPTGQRDAAIQALQIAKAVHAKGTGARPEPIDAAMVRMSCATDLGQETAELIQLCQWWPSAQAAIHQPIVEHPERVSGS
>NZ_CP011883|2422578:2445111|2428284_2428605_+|WP_168162529.1|DBSCAN-SWA
MVSTPAHPADGLELGYARVSTNKQSLERHSTPSPRPDYPRNGSTSTRAPARPSTRPGLTKLLEYARPGDTIVTYTLDRLGRNLREVLNLVHDLNEKKIGMRTLADR
>NZ_CP011883|2422578:2445111|2429877_2432544_-|WP_054879896.1|DBSCAN-SWA
MRIAVTGASGVLGRGLAARLLSQGHDVVGIARHRPESWSSAAGFVAADIRDAVAVGRAVSGADVVAHCAWARRPQDQVNIEGARNVLDAMAKTGARRIVFASSAHVYGAATAPATEDDAMTSASTDGLHKARVEEMLAASGVQWVAVRSALVVGRGVDNWVRRVLALPMIPDIGADRALQVIHTGDALRLFIRAIMDTEIDSGPVNLAAPGETTLRQIAATLRRPIVPLGSRLTVLRRLSLLAELELLQSAPLMDTSRLRDEWGFVPAWNADECVDDFALAVRGRVSLGERLVSVPWRLANIQDLPAVDVPSEDGVVPRFVGPEGDNGEFDTPIDPRFPTFLATNLSEALPGPFSPSSASVTVRGLRAGGVGIAERLRPGGVIQREIAMRTVAVFAHRLYGGITSGHFMAETVPFAKPATIISNSGFFGPSMASLPIFGAQRPPSESSRVRKQLRTLRNIGVFGGNLIGLSAGSPRDTRDYIDDVDRLEHLAGVDVTQLDDRRLLSLILLARDHVVHGWVLASGSFMLCAAFNVLLRGLCGRDAAPQAGPELVSARSVEAVQRLVSAARRDPNVTRLLAELGKRLDVLAVQAPEFHAAVLAELALIGHRGPAEVEMLSTSYADDPELLVRMVAKALSAPAAPPPQHARIPLRARPVALLAARQLRDREVRRDKMVRAIWVLRGLLREYGRRLTDAGVFGTADDVFYLLVDELDELDRLPADVAGLVGRRRAEQHRLAAIVPPTVFSGSWQPSTTSSSSLGVGDTLRGVGVCGGRVRGRVRIVRPETIDDLQPGEILVAEVTDVGYTAAFCYAAAVVTELGGPMSHAAVVAREFGFPCVVDVQGATRRLPPGALVEIDGSAGEIRVLDMAAEDISPLPVSDQSRHVDRS
>NZ_CP011883|2422578:2445111|2428642_2429815_+|WP_054879897.1|DBSCAN-SWA
MTSLRPVTYENVRWKPQGRRYASAALPKYGTYHPAVPANIADLVLDLPPPVFADAESASHEIIRFDAELGGDIAPFAAVLLRSESAASSQIENLTASARAIAEAELPGGKAKRNAEMIVANTAAMQAAVALSDTVDADAILAIHRALTVNEPRHTPGEFRTEPVWIGGGSTPIGATFVGPRHGVVPGAIGDLIAFAQRTDVPTLPQIAVGHAQFETIHPFTDGNGRTGRALVQAMLRNKGLTRQVTVPVSAGLLADTGAYFAALTTYRDGDAGPIVECFSQASVLAIANGRQLVADLHGIRETWNGVITARSDSAVWKVADLLTRRPVVNAALLAQELGIESTNAHRYLNPLTEAGILVETTSGPRNRVWRSPEVLAALDAFAERAGRRG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054879901.1|2422578_2424084_-	carboxylesterase/lipase family protein	A0A0G2Y6W1	Acanthamoeba_polyphaga_mimivirus	4.0e-19	33.0
WP_156406759.1|2424793_2425906_-	hypothetical protein	V5UNW9	Mycobacterium_phage	9.4e-58	36.3
WP_054879899.1|2426004_2426502_-	hypothetical protein	V5UP92	Mycobacterium_phage	7.7e-36	48.8
WP_054880950.1|2426482_2426917_-	helix-turn-helix transcriptional regulator	V5UN35	Mycobacterium_phage	2.2e-31	53.0
WP_156406760.1|2428118_2428262_+	hypothetical protein	NA	NA	NA	NA
WP_168162529.1|2428284_2428605_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.7e-07	37.0
WP_054879897.1|2428642_2429815_+	Fic family protein	D7RWK9	Brochothrix_phage	2.1e-07	28.6
WP_054879896.1|2429877_2432544_-	sugar epimerase family protein	NA	NA	NA	NA
WP_054879895.1|2432553_2445111_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.0e-31	30.8