CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_020306	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 plasmid pCFSAN001992_1, complete sequence	0 crisprs	NA	0	0
NC_020308	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 plasmid pCFSAN001992_2, complete sequence	0 crisprs	NA	0	0
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	2 crisprs	csa3,DEDDh,DinG,cas3,c2c9_V-U4,PD-DExK,WYL	6	10

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020307_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020307_1

3904718-3905662

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

15 spacers

The CRISPR arrays of NC_020307_1

>merge|NC_020307|1|3904718-3905662|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTATCCCTGCAGCTCCAGCGCCCCTTCCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGATCTCATTTGGCGAGGGGTGCGTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGAGCGTCATATGCCTGCAAGGCAAAGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGTTAATTATATTACAATACAAATCATAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAGCGGCACTTACCTTAGTCCGCCGAACGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACAAAAATCGCCGACGGCATTCGTACTGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCCCCATATTGGCTATATGCTGACGCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTATCGGTAGCGCGGGTGAGGCGGCGGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTTTCTCGTGTGGCGGTCCATTGGCCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATAGCTCGGATCACCGCGATATACCGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGACGCTACTATCGGATTCGCTCCGGGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGGCAATATCCATCACTCAGCACCAGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTCAAATATGGGGTTATTGGGAGGGAGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCTACAGTTGCCACCGCGTACAACTCAACAGTGTTCCCCGCGTCAGCGGGGATAAACCGCCATACCATTTCCACTGGCGCAACGATTTTTGGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NC_020307|1|1|3904718-3905601|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTATCCCTGCAGCTCCAGCGCCCCTTCCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTGATCTCATTTGGCGAGGGGTGCGTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGCGTCATATGCCTGCAAGGCAAAGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTAATTATATTACAATACAAATCATAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGGCACTTACCTTAGTCCGCCGAACGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAAAAATCGCCGACGGCATTCGTACTGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCCCCATATTGGCTATATGCTGACGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTATCGGTAGCGCGGGTGAGGCGGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTTTCTCGTGTGGCGGTCCATTGGCCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATAGCTCGGATCACCGCGATATACCGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGGCAATATCCATCACTCAGCACCAGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTCAAATATGGGGTTATTGGGAGGGAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCTACAGTTGCCACCGCGTACAACTCAACA
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NC_020307|1|1|3904718-3905662|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTATCCCTGCAGCTCCAGCGCCCCTTCCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTGATCTCATTTGGCGAGGGGTGCGTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGCGTCATATGCCTGCAAGGCAAAGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTAATTATATTACAATACAAATCATAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGGCACTTACCTTAGTCCGCCGAACGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAAAAATCGCCGACGGCATTCGTACTGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCCCCATATTGGCTATATGCTGACGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTATCGGTAGCGCGGGTGAGGCGGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTTTCTCGTGTGGCGGTCCATTGGCCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATAGCTCGGATCACCGCGATATACCGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGGCAATATCCATCACTCAGCACCAGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTCAAATATGGGGTTATTGGGAGGGAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCTACAGTTGCCACCGCGTACAACTCAACA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCATACCATTTCCACTGGCGCAACGATTTTTG
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NC_020307|1|1|3904718-3905662|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGTATCCCTGCAGCTCCAGCGCCCCTTCCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTGATCTCATTTGGCGAGGGGTGCGTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGAGCGTCATATGCCTGCAAGGCAAAGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTAATTATATTACAATACAAATCATAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCGGCACTTACCTTAGTCCGCCGAACGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAAAAATCGCCGACGGCATTCGTACTGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCCCCATATTGGCTATATGCTGACGCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTATCGGTAGCGCGGGTGAGGCGGCGGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTTTCTCGTGTGGCGGTCCATTGGCCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATAGCTCGGATCACCGCGATATACCGGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGGCAATATCCATCACTCAGCACCAGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTCAAATATGGGGTTATTGGGAGGGAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCTACAGTTGCCACCGCGTACAACTCAACA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCATACCATTTCCACTGGCGCAACGATTTTTG
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020307.1\|WP_000036734.1\|3902315_3903614_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_020307.1\|WP_000108313.1\|3906646_3907009_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_020307.1\|WP_001261199.1\|3898501_3898798_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_020307.1\|WP_000210451.1\|3899567_3900368_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_020307.1\|WP_000480218.1\|3898179_3898536_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NC_020307.1\|WP_001528082.1\|3917878_3919318_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_020307.1\|WP_000210864.1\|3900595_3902233_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_020307.1\|WP_015406306.1\|3905759_3906557_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_020307.1\|WP_001528085.1\|3911031_3911766_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_020307.1\|WP_001173661.1\|3919304_3919910_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_020307.1\|WP_001199956.1\|3903749_3904421_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_020307.1\|WP_015406310.1\|3915663_3916710_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_020307.1\|WP_000706486.1\|3890513_3891656_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NC_020307.1\|WP_015406304.1\|3894513_3895809_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NC_020307.1\|WP_000372384.1\|3916960_3917869_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_020307.1\|WP_015406307.1\|3907444_3909244_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_020307.1\|WP_000186400.1\|3891699_3894456_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NC_020307.1\|WP_000226841.1\|3895860_3898095_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_020307.1\|WP_001290651.1\|3909243_3910956_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_020307.1\|WP_015406308.1\|3911853_3912807_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NC_020307.1\|WP_000036734.1\|3902315_3903614_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_020307.1\|WP_000108313.1\|3906646_3907009_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_020307.1\|WP_001261199.1\|3898501_3898798_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
NC_020307.1\|WP_000210451.1\|3899567_3900368_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_020307.1\|WP_000480218.1\|3898179_3898536_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NC_020307.1\|WP_001528082.1\|3917878_3919318_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_020307.1\|WP_000210864.1\|3900595_3902233_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_020307.1\|WP_015406306.1\|3905759_3906557_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.81886e-102
NC_020307.1\|WP_001528085.1\|3911031_3911766_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33635e-138
NC_020307.1\|WP_001173661.1\|3919304_3919910_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
NC_020307.1\|WP_001199956.1\|3903749_3904421_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NC_020307.1\|WP_015406310.1\|3915663_3916710_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_020307.1\|WP_000706486.1\|3890513_3891656_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NC_020307.1\|WP_015406304.1\|3894513_3895809_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NC_020307.1\|WP_000372384.1\|3916960_3917869_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_020307.1\|WP_015406307.1\|3907444_3909244_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_020307.1\|WP_000186400.1\|3891699_3894456_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NC_020307.1\|WP_000226841.1\|3895860_3898095_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_020307.1\|WP_001290651.1\|3909243_3910956_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_020307.1\|WP_015406308.1\|3911853_3912807_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NC_020307.1|WP_001199956.1|3903749_3904421_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_020307.1|WP_000036734.1|3902315_3903614_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_020307.1|WP_000210864.1|3900595_3902233_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NC_020307.1|WP_000210451.1|3899567_3900368_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_020307.1|WP_001261199.1|3898501_3898798_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NC_020307.1|WP_000480218.1|3898179_3898536_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NC_020307.1|WP_000226841.1|3895860_3898095_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NC_020307.1|WP_015406304.1|3894513_3895809_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NC_020307.1|WP_000186400.1|3891699_3894456_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NC_020307.1|WP_000706486.1|3890513_3891656_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NC_020307.1|WP_015406306.1|3905759_3906557_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_020307.1|WP_000108313.1|3906646_3907009_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_020307.1|WP_015406307.1|3907444_3909244_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMLGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NC_020307.1|WP_001290651.1|3909243_3910956_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_020307.1|WP_001528085.1|3911031_3911766_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_020307.1|WP_015406308.1|3911853_3912807_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_020307.1|WP_015406310.1|3915663_3916710_-|aminopeptidase
MFSATRHFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKNNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_020307.1|WP_000372384.1|3916960_3917869_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_020307.1|WP_001528082.1|3917878_3919318_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_020307.1|WP_001173661.1|3919304_3919910_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS

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Crispr_ID: NC_020307_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020307_2

3915194-3915649

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

The CRISPR arrays of NC_020307_2

>merge|NC_020307|2|3915194-3915649|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCCTTTTGAGTGCCGTTTTTGCGTGTTTTGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAAATCGCGCTTTCTTGTTACGCGGGTTACGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTCTAATTTCATAAAATCACCTGCAAATAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCACGCCATTTACGCCTGTATAATTTACCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGAGCAGGAGATCGGCACCAGTTTTTCCAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTGAGTGTAACCTATTAATATTTAATTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAGTGGAGAGTCGCTGGAAAATGCTCATAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>NC_020307|2|2|3915194-3915588|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTTTTGAGTGCCGTTTTTGCGTGTTTTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAAATCGCGCTTTCTTGTTACGCGGGTTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCTAATTTCATAAAATCACCTGCAAATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCACGCCATTTACGCCTGTATAATTTACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCAGGAGATCGGCACCAGTTTTTCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGAGTGTAACCTATTAATATTTAATTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NC_020307|2|2|3915194-3915649|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTTTTGAGTGCCGTTTTTGCGTGTTTTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAAATCGCGCTTTCTTGTTACGCGGGTTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCTAATTTCATAAAATCACCTGCAAATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCACGCCATTTACGCCTGTATAATTTACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCAGGAGATCGGCACCAGTTTTTCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGAGTGTAACCTATTAATATTTAATTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>NC_020307|2|2|3915194-3915649|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTTTTGAGTGCCGTTTTTGCGTGTTTTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAAATCGCGCTTTCTTGTTACGCGGGTTACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTCTAATTTCATAAAATCACCTGCAAATAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCACGCCATTTACGCCTGTATAATTTACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGAGCAGGAGATCGGCACCAGTTTTTCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGAGTGTAACCTATTAATATTTAATTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020307.1\|WP_000517480.1\|3920474_3920786_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_020307.1\|WP_000108313.1\|3906646_3907009_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_020307.1\|WP_015406310.1\|3915663_3916710_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_020307.1\|WP_000210451.1\|3899567_3900368_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_020307.1\|WP_001221538.1\|3923020_3923782_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_020307.1\|WP_001528082.1\|3917878_3919318_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_020307.1\|WP_000210864.1\|3900595_3902233_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_020307.1\|WP_000036734.1\|3902315_3903614_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_020307.1\|WP_001528085.1\|3911031_3911766_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_020307.1\|WP_001173661.1\|3919304_3919910_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_020307.1\|WP_001199956.1\|3903749_3904421_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_020307.1\|WP_000741649.1\|3920804_3921515_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_020307.1\|WP_015406306.1\|3905759_3906557_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_020307.1\|WP_000372384.1\|3916960_3917869_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_020307.1\|WP_015406307.1\|3907444_3909244_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_020307.1\|WP_001290651.1\|3909243_3910956_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_020307.1\|WP_001219245.1\|3921514_3921994_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_020307.1\|WP_000134249.1\|3921990_3923040_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_020307.1\|WP_015406308.1\|3911853_3912807_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_020307.1\|WP_001537530.1\|3919960_3920284_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
NC_020307.1\|WP_000517480.1\|3920474_3920786_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_020307.1\|WP_000108313.1\|3906646_3907009_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_020307.1\|WP_015406310.1\|3915663_3916710_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_020307.1\|WP_000210451.1\|3899567_3900368_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_020307.1\|WP_001221538.1\|3923020_3923782_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_020307.1\|WP_001528082.1\|3917878_3919318_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_020307.1\|WP_000210864.1\|3900595_3902233_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_020307.1\|WP_000036734.1\|3902315_3903614_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_020307.1\|WP_001528085.1\|3911031_3911766_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33635e-138
NC_020307.1\|WP_001173661.1\|3919304_3919910_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
NC_020307.1\|WP_001199956.1\|3903749_3904421_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NC_020307.1\|WP_000741649.1\|3920804_3921515_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NC_020307.1\|WP_015406306.1\|3905759_3906557_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.81886e-102
NC_020307.1\|WP_000372384.1\|3916960_3917869_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_020307.1\|WP_015406307.1\|3907444_3909244_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_020307.1\|WP_001290651.1\|3909243_3910956_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_020307.1\|WP_001219245.1\|3921514_3921994_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NC_020307.1\|WP_000134249.1\|3921990_3923040_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_020307.1\|WP_015406308.1\|3911853_3912807_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_020307.1\|WP_001537530.1\|3919960_3920284_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48

>NC_020307.1|WP_015406308.1|3911853_3912807_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_020307.1|WP_001528085.1|3911031_3911766_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_020307.1|WP_001290651.1|3909243_3910956_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_020307.1|WP_015406307.1|3907444_3909244_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMLGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NC_020307.1|WP_000108313.1|3906646_3907009_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_020307.1|WP_015406306.1|3905759_3906557_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_020307.1|WP_001199956.1|3903749_3904421_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_020307.1|WP_000036734.1|3902315_3903614_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_020307.1|WP_000210864.1|3900595_3902233_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NC_020307.1|WP_000210451.1|3899567_3900368_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_020307.1|WP_015406310.1|3915663_3916710_-|aminopeptidase
MFSATRHFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKNNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_020307.1|WP_000372384.1|3916960_3917869_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_020307.1|WP_001528082.1|3917878_3919318_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_020307.1|WP_001173661.1|3919304_3919910_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_020307.1|WP_001537530.1|3919960_3920284_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_020307.1|WP_000517480.1|3920474_3920786_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_020307.1|WP_000741649.1|3920804_3921515_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_020307.1|WP_001219245.1|3921514_3921994_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_020307.1|WP_000134249.1|3921990_3923040_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDSGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_020307.1|WP_001221538.1|3923020_3923782_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_LR735422	Staphylococcus epidermidis strain none isolate Se_BPH0697 plasmid 2	56005-56036	6	0.812
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP027420	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence	32810-32841	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	38951-38982	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	58080-58111	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	126493-126524	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	145627-145658	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	2082-2113	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	21216-21247	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	1228-1259	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	20361-20392	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	AP013557	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, * SEQUENCING IN PROGRESS *, 3 ordered pieces	12405-12436	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	KC465898	Pelagibacter phage HTVC010P, complete genome	26694-26725	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	AP013554	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S23-C36, * SEQUENCING IN PROGRESS *, 7 ordered pieces	14467-14498	7	0.781
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	AP013556	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, * SEQUENCING IN PROGRESS *, 6 ordered pieces	21938-21969	7	0.781
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	MN850604	Escherichia phage tunzivis, complete genome	24012-24043	7	0.781
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	MN850582	Escherichia phage ityhuna, complete genome	14853-14884	7	0.781
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	MN850586	Escherichia phage orkinos, complete genome	7591-7622	7	0.781
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	NC_047938	Escherichia phage SECphi27 genome assembly, complete genome: monopartite	26634-26665	7	0.781
NC_020307_2	2.7\|3915589\|32\|NC_020307\|CRISPRCasFinder,CRT	3915589-3915620	32	MF999224	Lactobacillus phage LJ, complete genome	16480-16511	7	0.781
NC_020307_1	1.1\|3904747\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904747-3904778	32	NZ_CP014682	Kozakia baliensis strain NBRC 16680 plasmid pKB16680_1, complete sequence	111140-111171	8	0.75
NC_020307_1	1.1\|3904747\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904747-3904778	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	221731-221762	8	0.75
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	U72945	Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region	471-502	8	0.75
NC_020307_1	1.1\|3904747\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904747-3904778	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3568200-3568231	9	0.719
NC_020307_1	1.1\|3904747\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904747-3904778	32	NC_017590	Thermus thermophilus JL-18 plasmid pTTJL1802, complete sequence	76715-76746	9	0.719
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP018210	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence	16314-16345	9	0.719
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	MN693083	Marine virus AFVG_25M55, complete genome	1394-1425	9	0.719
NC_020307_1	1.14\|3905541\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3905541-3905572	32	NC_010850	Rhodococcus sp. NS1 plasmid pNSL1, complete sequence	2319-2350	9	0.719
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	47111-47142	9	0.719
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	NZ_LR134421	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12	6879-6910	9	0.719
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	168380-168411	10	0.688
NC_020307_1	1.4\|3904930\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3904930-3904961	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	378504-378535	10	0.688
NC_020307_1	1.6\|3905052\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3905052-3905083	32	MN033451	Leviviridae sp. isolate H2_Rhizo_31_scaffold_703 RNA-dependent RNA polymerase (H2Rhizo31703_000001) and hypothetical protein (H2Rhizo31703_000002) genes, complete cds; and hypothetical protein (H2Rhizo31703_000003) gene, partial cds	2559-2590	10	0.688
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	4943-4974	10	0.688
NC_020307_2	2.3\|3915345\|32\|NC_020307\|PILER-CR,CRISPRCasFinder,CRT	3915345-3915376	32	DQ003641	Listeria phage P35, complete genome	21084-21115	10	0.688

1. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR735422 (Staphylococcus epidermidis strain none isolate Se_BPH0697 plasmid 2) position: , mismatch: 6, identity: 0.812

ttcgttaa--ttatattacaatacaaatcataac	CRISPR spacer
--tgttaaccttatattactaaacaaatcataat	Protospacer
  .*****  ********* * ***********.

2. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027420 (Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

3. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

4. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

5. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

6. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

7. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

8. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

9. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

10. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

11. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to AP013557 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctaattttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

12. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to KC465898 (Pelagibacter phage HTVC010P, complete genome) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctaattttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

13. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to AP013554 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S23-C36, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctagttttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

14. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to AP013556 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctaattttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

15. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to MN850604 (Escherichia phage tunzivis, complete genome) position: , mismatch: 7, identity: 0.781

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
tgtcaaatttcataaaatcacctgtaaaaatc	Protospacer
. ** *******************.*** * .

16. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to MN850582 (Escherichia phage ityhuna, complete genome) position: , mismatch: 7, identity: 0.781

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
tgtcaaatttcataaaatcacctgtaaaaatc	Protospacer
. ** *******************.*** * .

17. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to MN850586 (Escherichia phage orkinos, complete genome) position: , mismatch: 7, identity: 0.781

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
tgtcaaatttcataaaatcacctgtaaaaatc	Protospacer
. ** *******************.*** * .

18. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NC_047938 (Escherichia phage SECphi27 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.781

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
tgtcaaatttcataaaatcacctgtaaaaatc	Protospacer
. ** *******************.*** * .

19. spacer 2.7|3915589|32|NC_020307|CRISPRCasFinder,CRT matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 7, identity: 0.781

gaagtggagagtcgctggaaaatgctcataaa----	CRISPR spacer
gaagtggagaatggctggaaaat----acaaagtgc	Protospacer
**********.* **********    *.***

20. spacer 1.1|3904747|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014682 (Kozakia baliensis strain NBRC 16680 plasmid pKB16680_1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtatccctgcagctccagcgccccttcctt	CRISPR spacer
tcgtatcccagctgctccagcgcatcatcaac	Protospacer
********* ** ********** .* **  .

21. spacer 1.1|3904747|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtatcc---ctgcagctccagcgccccttcctt	CRISPR spacer
---gatgcaggctgcagcttcagcgcaccttcctg	Protospacer
    ** *   ********.****** *******

22. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to U72945 (Virus-like particle CAK1 of Clostridium beijerinckii origin of replication region) position: , mismatch: 8, identity: 0.75

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
taatttttttcataaaatcacctcaaaataat	Protospacer
.  .*  ****************  *******

23. spacer 1.1|3904747|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

tcgtatccctgcagctccagcgccccttcctt	CRISPR spacer
ttcaatccctgcagcgccagcgccgctgcgac	Protospacer
*.  *********** ******** ** *  .

24. spacer 1.1|3904747|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NC_017590 (Thermus thermophilus JL-18 plasmid pTTJL1802, complete sequence) position: , mismatch: 9, identity: 0.719

tcgtatccctgcagctccagcgccccttcctt	CRISPR spacer
accagatcctggaggtccagcgccccttccgt	Protospacer
 *  . .**** ** *************** *

25. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018210 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
accatgaattaaattacactacaaatcatgca	Protospacer
 .*.* ***** ****** **********.

26. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to MN693083 (Marine virus AFVG_25M55, complete genome) position: , mismatch: 9, identity: 0.719

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
cttctctattgtattacaatacaaattataga	Protospacer
.*. *. ***.***************.***.

27. spacer 1.14|3905541|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NC_010850 (Rhodococcus sp. NS1 plasmid pNSL1, complete sequence) position: , mismatch: 9, identity: 0.719

cccctacagttgccaccgcgtacaactcaaca	CRISPR spacer
cgagcactgttgccgccgcgtacaactccgct	Protospacer
*   .** ******.************* .*

28. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 9, identity: 0.719

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
aatttgatttaataaaatcacttgcaaatgga	Protospacer
  *.*.**** **********.*******..

29. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 9, identity: 0.719

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
tttcgttaatcataaaaaaacctgcaaataat	Protospacer
..**     ********  *************

30. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 10, identity: 0.688

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
aatatatattatattacaatataaaacatact	Protospacer
  ..*  **************.*** **** .

31. spacer 1.4|3904930|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 10, identity: 0.688

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
aatatatattatattacaatataaaacatact	Protospacer
  ..*  **************.*** **** .

32. spacer 1.6|3905052|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to MN033451 (Leviviridae sp. isolate H2_Rhizo_31_scaffold_703 RNA-dependent RNA polymerase (H2Rhizo31703_000001) and hypothetical protein (H2Rhizo31703_000002) genes, complete cds; and hypothetical protein (H2Rhizo31703_000003) gene, partial cds) position: , mismatch: 10, identity: 0.688

acaaaaatcgccgacggcattcgtactggtca	CRISPR spacer
ggtgagatcgtcgacggcattcggactggcgt	Protospacer
.  .*.****.************ *****.

33. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 10, identity: 0.688

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
gttctaagttgataaaatcacctgctacggtc	Protospacer
 .***** ** ************** *  . .

34. spacer 2.3|3915345|32|NC_020307|PILER-CR,CRISPRCasFinder,CRT matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 10, identity: 0.688

cctctaatttcataaaatcacctgcaaataat	CRISPR spacer
gttctaagttgataaaatcacctgctacggtc	Protospacer
 .***** ** ************** *  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80032 : 89205

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|80032_80980_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_015405841.1\|80963_81695_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|81675_81783_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|81842_82574_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|82798_84484_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|84480_85200_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|85246_85714_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001528371.1\|85770_86301_-	YehR family lipoprotein	NA	NA	NA	NA
WP_015405842.1\|86472_86931_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	4.9e-53	72.5
WP_001528465.1\|87171_89205_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	27.6

DBSCAN-SWA_2

164699 : 175206

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001528434.1\|164699_166103_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5
WP_000981469.1\|166280_167174_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_015405857.1\|167550_168636_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.7e-102	53.6
WP_015405858.1\|168635_169535_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
WP_015405859.1\|169582_170461_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
WP_000973709.1\|170461_171013_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_001528498.1\|171018_171993_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648785.1\|172008_172782_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_001528452.1\|172786_173866_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
WP_000126349.1\|173892_175206_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_3

272963 : 280198

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001529332.1\|272963_273383_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_001529335.1\|273385_274654_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.4e-227	92.2
WP_000208509.1\|275108_275321_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|275331_275520_+	hypothetical protein	NA	NA	NA	NA
WP_015405879.1\|275779_276958_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.1e-109	57.0
WP_000107437.1\|277607_277919_+	hypothetical protein	NA	NA	NA	NA
WP_001529334.1\|277998_278694_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	28.2
WP_001157312.1\|278767_280198_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.5e-105	57.5

DBSCAN-SWA_4

383038 : 392405

Salmonella_phage(44.44%)

integrase,tail

attL 377482:377496|attR 388371:388385

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
377482:377496	attL	NA	NA	NA	NA
WP_000856225.1\|383038_383269_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168393.1\|383406_383781_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_001529229.1\|383781_384657_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|384673_385027_+	YebY family protein	NA	NA	NA	NA
WP_001529245.1\|385400_386480_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	5.1e-101	53.2
WP_015405889.1\|386476_387583_-	PD-(D/E)XK nuclease-like domain-containing protein	Q9QF34	Lambdoid_phage	4.8e-54	65.5
WP_001529234.1\|387613_387901_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.9e-39	95.1
WP_001529209.1\|387897_388431_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.6e-10	42.4
388371:388385	attR	NA	NA	NA	NA
WP_000789530.1\|388687_388855_-	lytic enzyme	NA	NA	NA	NA
WP_000348550.1\|389157_389649_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.6e-44	56.2
WP_001529243.1\|390201_391539_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	9.9e-78	52.1
WP_001529204.1\|391510_391831_+	hypothetical protein	A0A0M4QWS3	Salmonella_phage	2.9e-44	79.2
WP_015405891.1\|391820_392405_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-82	80.1

DBSCAN-SWA_5

1034520 : 1042796

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|1034520_1034760_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_015405983.1\|1034977_1035142_-	hypothetical protein	NA	NA	NA	NA
WP_001529135.1\|1035639_1036449_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001277616.1\|1036521_1036899_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_000158843.1\|1037046_1037589_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001529122.1\|1037772_1038501_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.6e-61	52.0
WP_000275697.1\|1038517_1038931_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	3.2e-19	37.7
WP_001529189.1\|1039974_1041099_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_000444508.1\|1041545_1042796_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6

DBSCAN-SWA_6

1197057 : 1238974

Escherichia_phage(37.14%)

plate,integrase,tail,holin,terminase

attL 1206020:1206033|attR 1239161:1239174

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000594485.1\|1197057_1197579_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	7.8e-63	73.3
WP_015405994.1\|1197963_1198230_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.4e-36	85.2
WP_024138909.1\|1198245_1198437_-	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
WP_024138910.1\|1198545_1198980_-	hypothetical protein	NA	NA	NA	NA
WP_015405997.1\|1199335_1199929_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-91	86.9
WP_015405998.1\|1199918_1200743_-	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.7e-141	90.5
WP_015405999.1\|1200739_1202449_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	2.2e-90	65.2
WP_015406000.1\|1202445_1203072_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	1.6e-91	70.7
WP_001281710.1\|1203055_1204282_-\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	8.3e-148	63.6
WP_001261467.1\|1204278_1204611_-	hypothetical protein	NA	NA	NA	NA
WP_015406001.1\|1204607_1205324_-	hypothetical protein	NA	NA	NA	NA
WP_015406002.1\|1205320_1206373_-	hypothetical protein	NA	NA	NA	NA
1206020:1206033	attL	NA	NA	NA	NA
WP_015406003.1\|1206372_1206648_-	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.0e-05	31.8
WP_015406004.1\|1206644_1207361_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.7e-28	39.1
WP_015406005.1\|1207360_1209352_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	4.8e-20	35.8
WP_015406007.1\|1209475_1210063_-	hypothetical protein	NA	NA	NA	NA
WP_024138911.1\|1210062_1210500_-	hypothetical protein	NA	NA	NA	NA
WP_015406009.1\|1210503_1211898_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.3e-69	36.6
WP_001139603.1\|1211903_1212842_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	4.2e-51	39.2
WP_031603730.1\|1212825_1213236_-	hypothetical protein	NA	NA	NA	NA
WP_001114359.1\|1213253_1213679_-	hypothetical protein	NA	NA	NA	NA
WP_000780865.1\|1213691_1214177_-	hypothetical protein	NA	NA	NA	NA
WP_015406010.1\|1214243_1215275_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.9e-73	45.5
WP_024138912.1\|1215292_1216165_-	hypothetical protein	NA	NA	NA	NA
WP_015406012.1\|1216185_1217760_-	NUDIX hydrolase	Q6UJ14	Burkholderia_virus	1.3e-20	48.6
WP_010835735.1\|1217760_1218636_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.2e-55	45.8
WP_015406013.1\|1218607_1220038_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.0e-92	38.1
WP_015406014.1\|1220037_1221309_-	hypothetical protein	H9YPE5	environmental_Halophage	1.5e-14	30.9
WP_015406015.1\|1221298_1222273_-\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	8.6e-31	38.9
WP_015406016.1\|1222358_1222628_-	hypothetical protein	NA	NA	NA	NA
WP_015406017.1\|1222698_1223238_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_015406018.1\|1223234_1223849_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.8e-106	92.2
WP_015406019.1\|1223851_1224199_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.1e-44	79.4
WP_001533567.1\|1224468_1225155_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.1e-130	98.2
WP_015406020.1\|1225818_1226112_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	4.0e-32	64.2
WP_001643788.1\|1226108_1226705_-	DUF1367 family protein	H9C173	Pectobacterium_phage	6.5e-82	74.2
WP_000474096.1\|1226773_1226965_-	hypothetical protein	NA	NA	NA	NA
WP_001129735.1\|1227148_1227487_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
WP_015406022.1\|1227653_1228256_-	adenine methylase	G9L699	Escherichia_phage	1.3e-98	87.3
WP_000918617.1\|1228248_1228497_-	hypothetical protein	NA	NA	NA	NA
WP_015406023.1\|1228500_1229181_-	hypothetical protein	NA	NA	NA	NA
WP_015406024.1\|1229218_1230607_-	replicative DNA helicase	Q76H51	Enterobacteria_phage	2.0e-105	47.1
WP_024138914.1\|1230603_1231653_-	hypothetical protein	A0A1W6JNI1	Staphylococcus_phage	1.7e-32	38.5
WP_015406026.1\|1231658_1231883_-	hypothetical protein	H9C163	Pectobacterium_phage	2.8e-09	46.1
WP_024138915.1\|1231905_1232352_-	hypothetical protein	H9C162	Pectobacterium_phage	9.4e-25	50.4
WP_023972394.1\|1232757_1233213_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	4.6e-35	51.7
WP_000387662.1\|1233898_1234222_+	hypothetical protein	NA	NA	NA	NA
WP_001192832.1\|1234229_1234475_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
WP_015406028.1\|1234504_1236778_+	hypothetical protein	H9C157	Pectobacterium_phage	3.6e-104	34.9
WP_015406029.1\|1236774_1237329_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	7.5e-48	59.3
WP_000916251.1\|1237331_1237514_+	hypothetical protein	NA	NA	NA	NA
WP_001643772.1\|1237726_1237951_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_015406030.1\|1237951_1238974_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	7.8e-91	53.2
1239161:1239174	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1893658 : 1901951

Bacteriophage(33.33%)

integrase

attL 1886556:1886569|attR 1904951:1904964

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1886556:1886569	attL	NA	NA	NA	NA
WP_001527607.1\|1893658_1893928_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	1.5e-25	65.9
WP_015406094.1\|1893930_1894644_-	hypothetical protein	NA	NA	NA	NA
WP_001527373.1\|1894682_1896074_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	1.6e-211	73.5
WP_024136027.1\|1896082_1896259_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001046411.1\|1896265_1896733_-	hypothetical protein	NA	NA	NA	NA
WP_000772661.1\|1896733_1897906_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.0e-110	49.0
WP_000893217.1\|1898250_1899501_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.7e-98	48.2
WP_001285275.1\|1899512_1900616_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_001043667.1\|1900898_1901951_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.6e-113	58.8
1904951:1904964	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4078940 : 4084752

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015406334.1\|4078940_4081274_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.2
WP_000743149.1\|4081288_4081609_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216599.1\|4081605_4081833_-	hypothetical protein	NA	NA	NA	NA
WP_000980356.1\|4081829_4082387_-	ash family protein	Q7M2A7	Enterobacteria_phage	9.3e-30	66.7
WP_000546674.1\|4082383_4082650_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_000194694.1\|4083189_4083927_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.1e-81	65.3
WP_000984211.1\|4083923_4084169_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000210079.1\|4084185_4084752_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.8e-55	62.2

DBSCAN-SWA_9

4087841 : 4217693

139

Salmonella_phage(68.69%)

plate,integrase,tail,lysis,holin,capsid,terminase,tRNA,head,portal

attL 4105111:4105127|attR 4187681:4187697

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000124716.1\|4087841_4089035_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.6e-106	49.6
WP_000834152.1\|4089377_4090589_-	hypothetical protein	E5G6K9	Salmonella_phage	6.3e-108	47.5
WP_001528621.1\|4090585_4091611_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.2e-192	93.3
WP_000616881.1\|4091612_4092245_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.5e-102	89.5
WP_000102529.1\|4092364_4092613_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.4e-23	67.9
WP_000460863.1\|4092645_4093155_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	92.9
WP_000794278.1\|4093241_4093517_-	hypothetical protein	NA	NA	NA	NA
WP_001528723.1\|4093601_4093796_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	5.3e-25	84.1
WP_000963476.1\|4093759_4094101_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.0e-48	84.1
WP_001178763.1\|4094168_4094396_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	8.1e-17	64.0
WP_015406335.1\|4094395_4094623_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-20	65.3
WP_001528700.1\|4094619_4095477_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	3.5e-153	93.7
WP_015406336.1\|4095467_4097879_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	97.0
WP_015406337.1\|4098034_4098223_+	hypothetical protein	A0A1S6L006	Salmonella_phage	1.0e-25	98.4
WP_015406338.1\|4098234_4098471_+	DinI family protein	A0A1S6L014	Salmonella_phage	1.9e-29	95.7
WP_015406339.1\|4098587_4099265_+	hypothetical protein	NA	NA	NA	NA
WP_001655629.1\|4099606_4100713_+	hypothetical protein	NA	NA	NA	NA
WP_024138933.1\|4100725_4101160_+	hypothetical protein	NA	NA	NA	NA
WP_015406341.1\|4101159_4101825_+	hypothetical protein	NA	NA	NA	NA
WP_001655631.1\|4101894_4102929_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.3e-182	94.8
WP_001098431.1\|4102928_4104695_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_001655635.1\|4104837_4105671_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	8.2e-123	91.0
4105111:4105127	attL	NA	NA	NA	NA
WP_001655636.1\|4105687_4106770_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	8.5e-189	96.3
WP_015406342.1\|4106773_4107427_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.3e-110	95.9
WP_000673541.1\|4107522_4107987_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.9e-83	96.8
WP_000868184.1\|4107986_4108190_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|4108193_4108409_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_001069919.1\|4108389_4108899_+	lysozyme	A0A1S6KZY9	Salmonella_phage	2.2e-94	98.8
WP_015406343.1\|4108903_4109299_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	6.5e-62	100.0
WP_001655639.1\|4109280_4109706_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.8e-68	99.3
WP_001039961.1\|4109801_4110233_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_001655640.1\|4110225_4110672_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-66	90.4
WP_000993749.1\|4110740_4111319_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.5
WP_000177403.1\|4111315_4111675_+	GPW/gp25 family protein	E5G6N7	Salmonella_phage	8.0e-59	98.3
WP_001655641.1\|4111661_4112570_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	3.5e-159	99.3
WP_001086807.1\|4112562_4113168_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.1e-116	98.0
WP_015406344.1\|4113164_4114970_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	5.9e-227	76.7
WP_015406345.1\|4114969_4115545_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	2.4e-105	97.9
WP_072209236.1\|4116142_4116391_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	2.9e-23	69.6
WP_015406347.1\|4116424_4116649_+	helix-turn-helix domain-containing protein	E5G6P5	Salmonella_phage	1.2e-33	97.3
WP_015406348.1\|4116751_4117924_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.5
WP_001207652.1\|4117933_4118449_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	7.9e-92	98.8
WP_001280967.1\|4118503_4118806_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
WP_000763317.1\|4118820_4118940_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
WP_015406349.1\|4118932_4121740_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.5
WP_000980409.1\|4121736_4122222_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
WP_001657019.1\|4122218_4123319_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.5e-193	98.6
WP_000972388.1\|4123385_4123604_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	8.3e-27	76.4
WP_001668082.1\|4123888_4124479_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	4.4e-46	75.9
WP_072101562.1\|4124983_4126147_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_001528595.1\|4126154_4128335_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
WP_001528538.1\|4128331_4129741_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_015406351.1\|4129805_4141280_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|4141895_4142378_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242604.1\|4142527_4143004_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_015406352.1\|4142993_4143284_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|4143448_4143787_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001528556.1\|4143935_4145597_-	DNA repair protein RecN	NA	NA	NA	NA
WP_015406353.1\|4145682_4146561_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|4146683_4147274_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001528622.1\|4147308_4147914_-	hypothetical protein	NA	NA	NA	NA
WP_127908301.1\|4148043_4149330_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|4149349_4150141_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|4150306_4151668_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|4151920_4152169_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|4152187_4152736_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469807.1\|4152780_4153548_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|4153588_4153936_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000972010.1\|4154080_4154299_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.2e-38	100.0
WP_015406356.1\|4155539_4156025_-\|tail	phage tail protein	O80317	Escherichia_phage	5.0e-80	92.5
WP_015406357.1\|4156038_4158480_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	1.2e-286	81.1
WP_139772331.1\|4158472_4158628_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	3.3e-22	96.1
WP_015406359.1\|4158624_4158960_-\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	1.5e-51	98.2
WP_015406360.1\|4159022_4159541_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.6e-92	98.3
WP_015406361.1\|4159556_4160744_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.6e-223	99.7
WP_015406362.1\|4160878_4161280_-\|tail	tail assembly chaperone	A0A1B0V844	Salmonella_phage	1.9e-56	81.8
WP_015406363.1\|4161286_4162927_-\|tail	phage tail protein	Q37842	Escherichia_phage	4.6e-101	61.1
WP_015406364.1\|4162933_4163467_-\|tail	phage tail protein I	Q37841	Escherichia_phage	2.7e-95	92.6
WP_015406365.1\|4163459_4164368_-\|plate	baseplate assembly protein	Q37840	Escherichia_phage	5.2e-155	96.0
WP_015406366.1\|4164374_4164722_-	GPW/gp25 family protein	O80315	Escherichia_phage	7.2e-57	99.1
WP_015406367.1\|4164718_4165360_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	4.2e-111	95.8
WP_015406368.1\|4165428_4165878_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.8e-69	94.0
WP_001169074.1\|4165870_4166338_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
WP_001394645.1\|4166300_4166474_-	hypothetical protein	S4TNY4	Salmonella_phage	2.8e-25	98.2
WP_015406369.1\|4166445_4166859_-\|lysis	LysB family phage lysis regulatory protein	A0A0M4R2N5	Salmonella_phage	3.7e-44	96.4
WP_001144116.1\|4166855_4167353_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.2e-92	99.4
WP_000134660.1\|4167339_4167636_-\|holin	holin	Q6K1I2	Salmonella_virus	5.8e-47	100.0
WP_000868400.1\|4167639_4167843_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
WP_000214255.1\|4167842_4168349_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
WP_015406370.1\|4168442_4169192_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	9.9e-128	98.0
WP_015406371.1\|4169195_4170263_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.9e-198	99.4
WP_015406372.1\|4170339_4171194_-\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	1.5e-151	95.1
WP_015406373.1\|4171359_4173132_+\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	98.8
WP_015406374.1\|4173128_4173875_+	hypothetical protein	Q6K1I9	Salmonella_virus	7.3e-139	96.4
WP_000044288.1\|4173871_4174894_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.5e-198	99.7
WP_000718722.1\|4174914_4175115_+	hypothetical protein	A0A0M5M1G4	Salmonella_phage	7.4e-06	78.1
WP_001161211.1\|4175327_4176269_+	hypothetical protein	Q2P9W7	Enterobacteria_phage	2.2e-164	90.4
WP_153260300.1\|4176369_4176543_+	hypothetical protein	NA	NA	NA	NA
WP_001222154.1\|4176747_4176981_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	8.0e-36	98.7
WP_000232650.1\|4176984_4177167_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
WP_015406376.1\|4177284_4179510_-	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	97.3
WP_015406377.1\|4179500_4179782_-	DUF3850 domain-containing protein	A0A0P0I3U9	Klebsiella_phage	2.0e-12	52.6
WP_000058620.1\|4179778_4180051_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	2.1e-35	78.9
WP_043942892.1\|4180047_4180617_-	DNA polymerase III subunit epsilon	A0A1S6L012	Salmonella_phage	1.8e-68	69.9
WP_000752599.1\|4180628_4180856_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	2.0e-31	91.7
WP_001246237.1\|4180855_4181083_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
WP_015406379.1\|4181152_4181353_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	6.7e-31	98.5
WP_015406380.1\|4181339_4181567_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	3.2e-37	98.7
WP_015406381.1\|4181574_4182084_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	3.1e-88	97.6
WP_001278194.1\|4182116_4182488_-	hypothetical protein	A0A0M4R4X7	Salmonella_phage	1.4e-61	99.2
WP_015406382.1\|4182601_4183447_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	4.4e-116	74.4
WP_015406383.1\|4183455_4183794_+	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	1.4e-41	72.1
WP_015406384.1\|4183818_4184868_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	2.0e-187	90.0
WP_015406385.1\|4185119_4186340_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	2.2e-07	37.0
WP_001212375.1\|4186332_4186851_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|4187290_4188361_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
4187681:4187697	attR	NA	NA	NA	NA
WP_001528543.1\|4188370_4189492_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000210991.1\|4189549_4190458_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200080.1\|4190418_4191579_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|4191678_4191726_-	hypothetical protein	NA	NA	NA	NA
WP_000178449.1\|4191829_4192168_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197660.1\|4192439_4193177_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|4193308_4194289_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000992639.1\|4194285_4195017_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235092.1\|4195146_4197720_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000985653.1\|4203493_4203949_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_000807820.1\|4204052_4205354_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.1e-44	30.6
WP_001264473.1\|4205350_4205674_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949286.1\|4205718_4207074_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_015406386.1\|4207188_4209849_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_001528681.1\|4209902_4210583_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098732.1\|4210655_4211075_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000997366.1\|4211278_4212316_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_000179978.1\|4212431_4213121_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000627811.1\|4213439_4213823_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000188414.1\|4213884_4214472_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000365861.1\|4214574_4215474_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219174.1\|4215491_4216826_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_000083343.1\|4216955_4217693_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_10

4222911 : 4264886

Salmonella_phage(57.58%)

protease,integrase,tail,lysis,terminase,tRNA,portal

attL 4221852:4221867|attR 4269135:4269150

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4221852:4221867	attL	NA	NA	NA	NA
WP_001007935.1\|4222911_4224141_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	6.4e-233	94.1
WP_014344516.1\|4224118_4224403_-	excisionase Xis	H6WRW8	Salmonella_phage	1.1e-42	87.2
WP_015406388.1\|4224443_4224683_-	DUF4060 family protein	H6WRW9	Salmonella_phage	3.7e-36	96.2
WP_001528555.1\|4224688_4225558_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	5.7e-159	95.2
WP_001528544.1\|4225554_4226235_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.0e-131	99.1
WP_001528698.1\|4226231_4227017_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	4.8e-149	98.9
WP_001528639.1\|4227022_4227319_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	5.8e-47	98.0
WP_001528648.1\|4227404_4227647_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	1.7e-12	48.4
WP_001528699.1\|4227899_4228106_+	hypothetical protein	K7P7I0	Enterobacteria_phage	4.8e-16	66.2
WP_015406389.1\|4228132_4228504_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	2.5e-31	50.0
WP_001528740.1\|4228481_4229543_-	hypothetical protein	NA	NA	NA	NA
WP_015406390.1\|4229612_4230008_-	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	3.5e-47	72.5
WP_000992434.1\|4230112_4230349_+	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	9.0e-27	73.1
WP_077908559.1\|4230314_4230689_+	hypothetical protein	S4TTD7	Salmonella_phage	1.6e-62	97.6
WP_001528571.1\|4230780_4231686_+	replication protein	A0A0M5M7Y1	Salmonella_phage	4.4e-170	96.0
WP_001528722.1\|4231682_4232384_+	replication protein P	A0A0M3ULE2	Salmonella_phage	4.2e-128	99.1
WP_031619097.1\|4232428_4232830_+	ParB/RepB/Spo0J family partition protein	S4TTI6	Salmonella_phage	1.4e-72	99.2
WP_001528574.1\|4232826_4233312_+	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	4.9e-43	92.9
WP_000704096.1\|4233338_4234331_-	peptidase M85	NA	NA	NA	NA
WP_001217669.1\|4234600_4234834_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_031610564.1\|4234950_4235199_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.8e-41	98.8
WP_015406391.1\|4235233_4235836_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	98.5
WP_000178134.1\|4235835_4236042_+	hypothetical protein	H6WRY8	Salmonella_phage	2.3e-34	98.5
WP_001673842.1\|4236567_4237059_+\|lysis	lysis protein	S4TNN7	Salmonella_phage	9.6e-55	74.2
WP_000669689.1\|4237247_4237649_-	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_000348549.1\|4237927_4238419_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	4.5e-44	57.5
WP_000147406.1\|4238405_4240514_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	2.1e-292	70.4
WP_015406394.1\|4240510_4240717_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
WP_001009891.1\|4240713_4242249_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.8e-177	63.1
WP_077906818.1\|4242166_4244281_+\|protease	ATP-dependent Clp protease proteolytic subunit	K7PGT6	Enterobacteria_phage	3.4e-274	72.4
WP_001528690.1\|4244902_4245481_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-98	93.7
WP_071530035.1\|4245577_4245778_-	PagK	NA	NA	NA	NA
WP_001522456.1\|4246414_4249780_+	DUF4765 family protein	A0A0N7KZG3	Stx2-converting_phage	1.2e-311	50.5
WP_000790154.1\|4250306_4252106_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_000002559.1\|4252122_4253097_+	signal peptidase I	NA	NA	NA	NA
WP_001068341.1\|4253370_4254051_+	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000102230.1\|4254047_4254953_+	GTPase Era	NA	NA	NA	NA
WP_000399380.1\|4254964_4255693_+	DNA repair protein RecO	NA	NA	NA	NA
WP_000818972.1\|4255704_4256436_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000986043.1\|4256435_4256816_+	holo-ACP synthase	NA	NA	NA	NA
WP_001196290.1\|4256927_4257188_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_001022476.1\|4257225_4258152_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.3e-09	24.4
WP_001276365.1\|4258267_4259464_+	OFA family MFS transporter	NA	NA	NA	NA
WP_001528649.1\|4259485_4260403_+	oxidoreductase	NA	NA	NA	NA
WP_000995688.1\|4260441_4261290_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001048527.1\|4261405_4262299_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000361660.1\|4262309_4263671_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000253558.1\|4263674_4264310_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001134560.1\|4264334_4264886_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
4269135:4269150	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020307

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection