CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020549	Candidatus Liberibacter asiaticus str. gxpsy, complete sequence	2 crisprs	DEDDh,cas3	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020549_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020549_1

197185-197315

Orphan

Consensus_repeat	Method
CAAACAAAGTATACGAGATTTTACCTGCTCAGGAGGCTACGTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020549_1

>merge|NC_020549|1|197185-197315|CRISPRCasFinder
CAAACAAAGTATACGAGATTTTACCTGCTCAGGAGGCTACGTCTAATAGTCATGGAAAAAGAAACGTCGGTAAAAATCGATAAAACCAAACAAAGTATACGATATTTTACCTGCTCAGGAGGCTACGTCTA

>NC_020549|1|1|197185-197315|CRISPRCasFinder
CAAACAAAGTATACGAGATTTTACCTGCTCAGGAGGCTACGTCTA	ATAGTCATGGAAAAAGAAACGTCGGTAAAAATCGATAAAAC
CAAACAAAGTATACGATATTTTACCTGCTCAGGAGGCTACGTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020549.1\|WP_012778542.1\|202353_203829_-\|NTP/NDP-exchange-transporter	unknown	unknown	gnl\|CDD\|367401
NC_020549.1\|WP_012778540.1\|198884_200705_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_020549.1\|WP_012778544.1\|204769_205195_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NC_020549.1\|WP_012778546.1\|206885_209558_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_020549.1\|WP_012778529.1\|187144_187504_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223970
NC_020549.1\|WP_012778530.1\|188024_188558_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|223750
NC_020549.1\|WP_012778528.1\|186769_186949_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223970
NC_020549.1\|WP_012778541.1\|201274_202096_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273953
NC_020549.1\|WP_012778532.1\|190693_191377_-\|RlmE-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223370
NC_020549.1\|WP_012778536.1\|195979_197080_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NC_020549.1\|WP_012778526.1\|184805_185813_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_020549.1\|WP_012778538.1\|197714_197918_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NC_020549.1\|WP_076778740.1\|198065_198632_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_020549.1\|WP_012778531.1\|189090_189459_+\|response-regulator	unknown	unknown	gnl\|CDD\|381144
NC_020549.1\|WP_012778547.1\|209715_210717_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NC_020549.1\|WP_012778527.1\|185869_186736_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NC_020549.1\|WP_012778535.1\|193549_195967_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_020549.1\|WP_031935129.1\|205327_206551_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NC_020549.1\|WP_012778533.1\|191944_193000_-\|porin	unknown	unknown	gnl\|CDD\|308243
NC_020549.1\|WP_012778543.1\|204466_204652_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020549.1\|WP_012778542.1\|202353_203829_-\|NTP/NDP-exchange-transporter	gnl\|CDD\|367401	pfam03219, TLC, TLC ATP/ADP transporter.	0
NC_020549.1\|WP_012778540.1\|198884_200705_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_020549.1\|WP_012778544.1\|204769_205195_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.53947e-49
NC_020549.1\|WP_012778546.1\|206885_209558_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_020549.1\|WP_012778529.1\|187144_187504_-\|hypothetical-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	0.00127825
NC_020549.1\|WP_012778530.1\|188024_188558_-\|peroxiredoxin	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	7.54072e-71
NC_020549.1\|WP_012778528.1\|186769_186949_-\|hypothetical-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	3.83493e-12
NC_020549.1\|WP_012778541.1\|201274_202096_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	9.91533e-18
NC_020549.1\|WP_012778532.1\|190693_191377_-\|RlmE-family-RNA-methyltransferase	gnl\|CDD\|223370	COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis].	1.90818e-88
NC_020549.1\|WP_012778536.1\|195979_197080_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NC_020549.1\|WP_012778526.1\|184805_185813_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NC_020549.1\|WP_012778538.1\|197714_197918_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	4.1277e-19
NC_020549.1\|WP_076778740.1\|198065_198632_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	3.54984e-65
NC_020549.1\|WP_012778531.1\|189090_189459_+\|response-regulator	gnl\|CDD\|381144	cd18160, REC_CpdR_CckA-like, phosphoacceptor receiver (REC) domain of Brucella abortus CpdR and CckA, and similar domains. Two-component systems (TCSs), consisting of a sensor and a response regulator, are used by bacteria to adapt to changing environments. Processes regulated by TCSs in bacteria include sporulation, pathogenicity, virulence, chemotaxis and membrane transport. Response regulators share the common phosphoacceptor REC domain and differ output domains such as DNA, RNA, ligand, and protein-binding, or enzymatic domain. CpdR is a stand-alone REC protein. CckA is a sensor histidine kinase containing N-terminal PAS domains and a C-terminal REC domain. CpdR and CckA are components of a regulatory phosphorelay system (composed of CckA, ChpT, CtrA and CpdR) that controls Brucella abortus cell growth, division, and intracellular survival inside mammalian host cells. CckA autophosphorylates in the presence of ATP and transfers a phosphoryl group to the conserved aspartic acid residue on its C-terminal REC domain, which is relayed to the ChpT phosphotransferase. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.60094e-42
NC_020549.1\|WP_012778527.1\|185869_186736_+\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	1.46101e-74
NC_020549.1\|WP_012778535.1\|193549_195967_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_020549.1\|WP_031935129.1\|205327_206551_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	3.31577e-179
NC_020549.1\|WP_012778533.1\|191944_193000_-\|porin	gnl\|CDD\|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	7.18373e-07
NC_020549.1\|WP_012778547.1\|209715_210717_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	3.45219e-152

>NC_020549.1|WP_012778536.1|195979_197080_-|phenylalanine--tRNA-ligase-subunit-alpha
MTECNVFEDEVERIRSSLYNSIASVTDMDSLNAIRVATLGRKGSISSLLKDLKNLDSQQVSARGAILNQLKVDISGKISARKDFIRNQLIFEQISSQSVDVSLPVFSSPCHRGRIHPVTQVIDEVTCIFMDMGFALEEGSDIETDYYNFAALNFPDDHPARQMHDTFFVPGIAGGKHKLLRTHTSPVQIRVMESQDLPIKVIVPGKTYRRDSDSTHSPMFHQIEGLVVSDSATIANLRWVLESFCKSFFEVSSLQMRFRPSFFPFTEPSFEVDVRCSFSDGIIKFDEGTEWMEILGCGMVDPRVLRGVGIDPDIYQGFAWGMGLDRIAMLKYGMPDVREFFGADVRWIEHYGFSPLDIPPLFSRLA
>NC_020549.1|WP_012778535.1|193549_195967_-|phenylalanine--tRNA-ligase-subunit-beta
MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRILMDRIVENVVKKTNAVLRSS
>NC_020549.1|WP_012778533.1|191944_193000_-|porin
MGLKKFFLGTVAVATIISYSESFAYVRGKTSMVSNNRARNRSAGKVGNVLPHITKVGGSLEKSLQARYHKLNGNNEFNSLAYDIPVKGNLEVNANAGDVTGVAKLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSLSMKGARLGYYKSWSDEVNPVYSPTTLYNDARGLDKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQVLGIGYMASYAIGKIRSTVTGGYDAGTNNVAIRANISSPVSRAGTLDCGAVWASGDNSYYDKSKYSVFAGYKFDVAKSITISGGGQYFGDINKTGKDGWSAGISAKYMISSGLEAQASVAFNDNFVKKGVAIDKGVDLSVGLKKSF
>NC_020549.1|WP_012778532.1|190693_191377_-|RlmE-family-RNA-methyltransferase
MVKPPGSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFRK
>NC_020549.1|WP_012778531.1|189090_189459_+|response-regulator
MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN
>NC_020549.1|WP_012778530.1|188024_188558_-|peroxiredoxin
MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK
>NC_020549.1|WP_012778529.1|187144_187504_-|hypothetical-protein
MPAIIQTVKSIIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTDLAIMMAQWMFRVLEKI
>NC_020549.1|WP_012778528.1|186769_186949_-|hypothetical-protein
MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD
>NC_020549.1|WP_012778527.1|185869_186736_+|lytic-murein-transglycosylase
MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT
>NC_020549.1|WP_012778526.1|184805_185813_+|aspartate-semialdehyde-dehydrogenase
MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQEA
>NC_020549.1|WP_012778538.1|197714_197918_-|50S-ribosomal-protein-L35
MPKMKTNSSSKKRFSITATGKVRAQAAGKRHGMIKRSNKFIRNARGTMVLASADAKKVIRNYLPNGI
>NC_020549.1|WP_076778740.1|198065_198632_-|translation-initiation-factor-IF-3
MAIRKVCRSSKLDVGSKDNYRVNDEVLLHNPGVIKLVTADGQNANEISASEALQMAQEANLDLVEIDSSVTPSVCKILDLRKLRYTIQKNAVEARKKQKSTGIKEVKMRPVIDLHDLQVKLKAIDGFLRDGCKVKISVKFRGREIMHQDLGRELLSNIKERFGEISRIDCEPKFEGRQMIMILSSKCV
>NC_020549.1|WP_012778540.1|198884_200705_+|elongation-factor-4
MQKKPTPLSRIRNFSIVAHIDHGKSTLADRFIQHCRGLTEREMSSQVLDNMDIERERGITIKAQTVRLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQAIDNNHEIITVLNKADLPSADPDRVKKQIEETIGISTEDALLVSAKTGEGIPLLLERIVQQLPSPTSPEGANAPLKALLIDSWYNSYLGVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKEVSHTRVGDTITDDSSPTTSALPGFKPIQPVVFCGLFPVDATQFENLRTAINKLRLNDASFSFELENSTALGFGFRCGFLGLLHLEIIQERLEREFSLNLIGTSPSVVYELYMHDGSMQKLSNPIDMPEVTKIAELREPWIQVTIITPNEYLGSILKLCQERRGIQIDMSHLDNRAMIVYELPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSDLVKLTILVNNETIDALSILVHRSVSEKRGRGICEKLKNLIPQQMFQIAIQAAIGGRIIARETVKARRKDVTAKCYGGDITRKRKLLEKQKEGKKRMRRFGRVDIPQSAFISILKTDNE
>NC_020549.1|WP_012778541.1|201274_202096_+|methyltransferase-domain-containing-protein
MNILFDMQLINRNRLRSFRQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDLILSPLNLHIINDTLEMFSKINHMLKPGGMFLAAIPGIGTLHELRKALLKAETELTGGASPRVIPFMDIKSAGTLMEKSGFISPIIDQDTYTVYYKSMLHLMHDLRGMGMSNPLIRRSKTPPYKSLFKRASTIYTEENSDLTGNVTASFSIIYVMGWKSTTFKTGTDE
>NC_020549.1|WP_012778542.1|202353_203829_-|NTP/NDP-exchange-transporter
MAHNQKILSVLLKIWQVFCAVKMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEYTQLISKE
>NC_020549.1|WP_012778543.1|204466_204652_-|hypothetical-protein
MGNSVNSTILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKHDLYHDYRR
>NC_020549.1|WP_012778544.1|204769_205195_-|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHALHM
>NC_020549.1|WP_031935129.1|205327_206551_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MLQSHVSPVLLPIKGVRLSAAALGIKYVGRDDVFLMVFDNPASVAGVFTRSSCPSAPVDFCKGNLSHGIARALIVNSGIANAFTGKRGRDTVRFIAKAVSELIPCKEEEVYVASTGIIGEFLDVALFDGVLSKMLCDATDDAWLDSAKAMMTTDRYAKVAVRTVDIDGIRVTINGLAKGAGMIAPDMATTLAFVVTDINISPAVLQNILSEGAEYSFNSITVDGDTSTSDTLLLFATGTVLGNFAPITDVSDKRLSLFRPALFDLLKDLALQVVCDGEGASKLLEVTVKGAADCASAKKVALSIANSPLVKTAFASESFGWWGRIVMAVGKSGVLVDRDRLSVWFGDVRIANNGEPEINFSQESVRSIVKKKCVPITVDLQIGNGIHTVWTCDFSKEYIHFNSNVQS
>NC_020549.1|WP_012778546.1|206885_209558_+|preprotein-translocase-subunit-SecA
MLSHLAKLASKLLIPSNERRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINNGETLDDLLVPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRKIGLKEGEAIIHPWINKAIERAQQKVEARNFETRKNLLKYDDVLNEQRKIIFEQRLEIIDTENILEIIADMRHDTLHNIVEKCIPNNSYPEKWDIKKLETEIYEIFGIHFPVLEWRNDNGIDHTEMSKRIFAKADKIAEDQENSFGTEKMQALGRHILLHTLDSFWREHMARLEHSRSIIGFRGYAQRDPLQEYKSEAFGFFNTLLTHLRKDVVSQIARIEPNNINNQELNNSLPYIAENDHGPVIQKENELDTPNVCKTSKIKRNHPCPCGSGKKYKHCHGSYL
>NC_020549.1|WP_012778547.1|209715_210717_+|UDP-glucose-4-epimerase-GalE
MENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAEFVLWGPLEQVDICDYTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFPITYESRRIGDPPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKYPRSLSNEHE

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Crispr_ID: NC_020549_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020549_2

1210763-1210850

Orphan

Consensus_repeat	Method
GGAATTCAAAAAGTTCGTAGCAAGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020549_2

>merge|NC_020549|2|1210763-1210850|CRISPRCasFinder
GGAATTCAAAAAGTTCGTAGCAAGGGGGTGGCAAAACACCACCCCCTTAAGACTGAAGGCGGAATACAAAAAGTTCGTAGCAAGGGGG

>NC_020549|2|2|1210763-1210850|CRISPRCasFinder
GGAATTCAAAAAGTTCGTAGCAAGGGGG	TGGCAAAACACCACCCCCTTAAGACTGAAGGC
GGAATACAAAAAGTTCGTAGCAAGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020549.1\|WP_015453058.1\|1211495_1213868_-\|PriCT-2-domain-containing-protein	unknown	unknown	gnl\|CDD\|273716
NC_020549.1\|WP_015453051.1\|1208966_1209188_+\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_015453045.1\|1202437_1202710_-\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_015453047.1\|1204328_1205876_-\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|367410
NC_020549.1\|WP_015453054.1\|1209998_1210211_+\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_051044097.1\|1206410_1206920_-\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_012778343.1\|1215398_1215722_+\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_015453055.1\|1210242_1210575_+\|intrrupted-gp229,-phage-associated-protein	unknown	unknown	gnl\|CDD\|224129
NC_020549.1\|WP_015453059.1\|1213868_1214258_-\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_015453050.1\|1208211_1208757_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_020549.1\|WP_015453060.1\|1214275_1214482_-\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_015453064.1\|1217995_1218646_+\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531
NC_020549.1\|WP_015453062.1\|1215849_1217016_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NC_020549.1\|WP_015453052.1\|1209270_1209663_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236361
NC_020549.1\|WP_015453061.1\|1214937_1215309_+\|hypothetical-protein	unknown	unknown	unknown
NC_020549.1\|WP_015453046.1\|1202706_1204326_-\|head-to-tail-joining-protein	unknown	unknown	gnl\|CDD\|378829
NC_020549.1\|WP_015453057.1\|1211103_1211448_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369525
NC_020549.1\|WP_015453063.1\|1217186_1217978_+\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|226144
NC_020549.1\|WP_015453065.1\|1218649_1220677_+\|DNA-polymerase-from-bacteriophage-origin	unknown	unknown	gnl\|CDD\|176479
NC_020549.1\|WP_015453053.1\|1209799_1210006_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020549.1\|WP_015453050.1\|1208211_1208757_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.57678e-09
NC_020549.1\|WP_015453058.1\|1211495_1213868_-\|PriCT-2-domain-containing-protein	gnl\|CDD\|273716	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	8.68319e-40
NC_020549.1\|WP_015453055.1\|1210242_1210575_+\|intrrupted-gp229,-phage-associated-protein	gnl\|CDD\|224129	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].	3.6592e-06
NC_020549.1\|WP_015453064.1\|1217995_1218646_+\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	2.39347e-28
NC_020549.1\|WP_015453062.1\|1215849_1217016_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	1.69889e-86
NC_020549.1\|WP_015453052.1\|1209270_1209663_+\|hypothetical-protein	gnl\|CDD\|236361	PRK08999, PRK08999, Nudix family hydrolase.	0.00141242
NC_020549.1\|WP_015453046.1\|1202706_1204326_-\|head-to-tail-joining-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	7.64869e-74
NC_020549.1\|WP_015453057.1\|1211103_1211448_-\|hypothetical-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	0.00563868
NC_020549.1\|WP_015453063.1\|1217186_1217978_+\|phage-repressor-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	2.59039e-45
NC_020549.1\|WP_015453065.1\|1218649_1220677_+\|DNA-polymerase-from-bacteriophage-origin	gnl\|CDD\|176479	cd08642, DNA_pol_A_pol_I_A, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used to search for protein signatures. The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains.	3.36881e-50
NC_020549.1\|WP_015453047.1\|1204328_1205876_-\|phage-terminase-large-subunit	gnl\|CDD\|367410	pfam03237, Terminase_6, Terminase-like family. This family represents a group of terminase proteins.	4.11781e-05

>NC_020549.1|WP_015453055.1|1210242_1210575_+|intrrupted-gp229,-phage-associated-protein
MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE
>NC_020549.1|WP_015453054.1|1209998_1210211_+|hypothetical-protein
MIKAKEPLEQTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGFNDVKKGALGGFYRR
>NC_020549.1|WP_015453053.1|1209799_1210006_+|hypothetical-protein
MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLTKGAKLSSD
>NC_020549.1|WP_015453052.1|1209270_1209663_+|hypothetical-protein
MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDYYASQI
>NC_020549.1|WP_015453051.1|1208966_1209188_+|hypothetical-protein
MEIDLQEKFKNLLQEDIKDYLDKCHKSFYSPETYPNMHREQEQKLLDEIIELRWKFAKEISSKTATQACPKPQ
>NC_020549.1|WP_015453050.1|1208211_1208757_-|helix-turn-helix-transcriptional-regulator
MLITPEIRRNWEEVGMRIRDIRKSKGKTLEELAIKAGTIKSAINSFEKGRNPTSINYALFLRNEFGASFDWIYDGETILKVYKPKTLKGDVLDPVAIGLRLKEIREHLGLNRVEFGKLVGLPCALISMYESGKRTPRITTAQNIKRAIGKPLDWIYFGDEIIIPKSIKRAKANQSSRKAKE
>NC_020549.1|WP_051044097.1|1206410_1206920_-|hypothetical-protein
MTKKSSHGRRSLYNRESTEALLALHASGKTILQACKQSGIKADTYFQWLERDKDGLKERHRRAKELYAEWLNDRIDEIIVAPLSEEEKNHPQAIKLREVFVKKKMWELEKRHRHVYGNHVSVEQKHTIDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD
>NC_020549.1|WP_015453047.1|1204328_1205876_-|phage-terminase-large-subunit
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELYDLMRSAITGGLQLPDDCPDLINELKSIKSISDTLGRLLIEKKRQGRSEFGVRSPDFVDALCYTFAVDPPRKDNPLYQGQDISEYEALDTGFNYEAYGM
>NC_020549.1|WP_015453046.1|1202706_1204326_-|head-to-tail-joining-protein
MVDKVGLKKEDNNNKEFIKKLIARFESLKAQRSEIEPIRQEIIDLVCPYRGKASEDKKIWDTTATSASDKLASLLHNLITPFGSRWHGLVAPDPQSGSFFASQENKLIREQCDHFVMELFAQRELPASGFNLCLKDFYTEVVLFGMGCFYVSEREGGGLRYISVPVSSIVCSANHENVVDTVFEEFSLTPENVAKKWGYDALSDKMKEDLDRSDPQKYEFFQAVFPDKEDDYEGYKKVIVSIDENRIIEEGYHRVMPYIVGRYEASPSNPFGYSPTHKASPSIRRLNALSASVSLYSEKALNPAVLTSEDTRGKTFSTKPKTVNHGWMDRQGRPRAVPFFTGSDARPSHEEMQRLQMQIRELYLLDLFQVLADRASRSATESMEKTLEKGIFISAIVGGLQAEFVGSMVKREIDILYQDQGDIRGLGKDLKVSYTSPLYKYQKAEELNGIVQGIRVNAEIASMTGDPTPLMMFNPYLCGKYAADGSGVPEVLVLSEEDTKQKLIEKQKQAEASQMKQLTMEESIKTGGAIAQDRAKGEV
>NC_020549.1|WP_015453045.1|1202437_1202710_-|hypothetical-protein
MIKGFDEVEKAEKVEQVRRYKSVFATFEGRWVLLDIMREGGLLATELSNDPIALARREGKRTIALYITDLIALEAEELISAYRELEQMEQ
>NC_020549.1|WP_015453057.1|1211103_1211448_-|hypothetical-protein
MEKTAVKQKVQRDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWFMGIIVSVLVSTIGILLKLSSH
>NC_020549.1|WP_015453058.1|1211495_1213868_-|PriCT-2-domain-containing-protein
MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYALEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEGEKRGSDTYQAWIDDCCDIGEDLWEESISLAKSYSEYREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVDDNNNIIDFKR
>NC_020549.1|WP_015453059.1|1213868_1214258_-|hypothetical-protein
MERKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKPIEELIYKRG
>NC_020549.1|WP_015453060.1|1214275_1214482_-|hypothetical-protein
MNTVKLGVKHFDTRKRGRTTEIRADGWMKEDNIARLSVVVSVAGETTDEEKLREYKEFVISAFAKAIS
>NC_020549.1|WP_015453061.1|1214937_1215309_+|hypothetical-protein
MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAVDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYANQI
>NC_020549.1|WP_012778343.1|1215398_1215722_+|hypothetical-protein
MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA
>NC_020549.1|WP_015453062.1|1215849_1217016_+|DUF2800-domain-containing-protein
MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNNAQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSEFEVIT
>NC_020549.1|WP_015453063.1|1217186_1217978_+|phage-repressor-protein
MSTITPFEFESNKIRTIVDKDQNIWFVAKDVATALGYENSNEAINAHCYGVAKRYPISDSLGRTQKVRIIAEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRKTGSYSVEAPKLRATSASTVLRVHKHLEELAKQAGLKDNQLLLKVNRGVTKITGVDQLGVMDIKHLPSSDNDEYLTVTEIGERLNPPFSARCLNKLLLQLGFQINNLLGGYRPTPKGEERGGKMCDVPMQHVEGSTQQLKWNSNLLVSFLQNELINTPRL
>NC_020549.1|WP_015453064.1|1217995_1218646_+|DUF2815-family-protein
MQKLTVKGRLSYPALDTKVSMKLPDGSSVEHYGCDIVFPKTDTKQINAVEACLKTAVTEIFPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLLVDRQAQPVSNPREVFYAGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASPKSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN
>NC_020549.1|WP_015453065.1|1218649_1220677_+|DNA-polymerase-from-bacteriophage-origin
MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYTLRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	KX879602	Liberibacter phage HHCA1-2, complete genome	22504-22535	0	1.0
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	HQ377372	Liberibacter phage SC1, complete genome	27015-27046	0	1.0
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	JF773396	Liberibacter phage FP2, complete genome	27655-27686	0	1.0
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	NC_019550	Liberibacter phage SC2, complete genome	22485-22516	0	1.0
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	KY661963	Liberibacter phage P-JXGC-3, complete genome	18455-18486	0	1.0
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	HQ377372	Liberibacter phage SC1, complete genome	33586-33617	3	0.906
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	JF773396	Liberibacter phage FP2, complete genome	34246-34277	3	0.906
NC_020549_2	2.1\|1210791\|32\|NC_020549\|CRISPRCasFinder	1210791-1210822	32	NC_019550	Liberibacter phage SC2, complete genome	29076-29107	3	0.906

1. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to KX879602 (Liberibacter phage HHCA1-2, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

2. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to HQ377372 (Liberibacter phage SC1, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

3. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

4. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

5. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to KY661963 (Liberibacter phage P-JXGC-3, complete genome) position: , mismatch: 0, identity: 1.0

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tggcaaaacaccacccccttaagactgaaggc	Protospacer
********************************

6. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to HQ377372 (Liberibacter phage SC1, complete genome) position: , mismatch: 3, identity: 0.906

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tagcaaaacgctacccccttaagactgaaggc	Protospacer
*.*******.*.********************

7. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to JF773396 (Liberibacter phage FP2, complete genome) position: , mismatch: 3, identity: 0.906

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tagcaaaacgctacccccttaagactgaaggc	Protospacer
*.*******.*.********************

8. spacer 2.1|1210791|32|NC_020549|CRISPRCasFinder matches to NC_019550 (Liberibacter phage SC2, complete genome) position: , mismatch: 3, identity: 0.906

tggcaaaacaccacccccttaagactgaaggc	CRISPR spacer
tagcaaaacgctacccccttaagactgaaggc	Protospacer
*.*******.*.********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1178133 : 1264363

Liberibacter_phage(98.88%)

tail,integrase,transposase,terminase,head

attL 1176196:1176210|attR 1264405:1264419

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1176196:1176210	attL	NA	NA	NA	NA
WP_015453018.1\|1178133_1178835_-	PriCT-2 domain-containing protein	A0A1L2K1I3	Liberibacter_phage	5.7e-77	59.3
WP_015453019.1\|1178860_1179358_+	DUF2800 domain-containing protein	A0A1L2K1I9	Liberibacter_phage	4.4e-31	43.0
WP_015453020.1\|1179362_1179959_+	DUF2815 family protein	A0A1L2K1I5	Liberibacter_phage	2.2e-29	43.7
WP_015453021.1\|1179961_1181989_+	DNA polymerase from bacteriophage origin	E7DUM6	Liberibacter_phage	1.1e-202	56.1
WP_015453022.1\|1181985_1182282_+	hypothetical protein	A0A220A2X3	Liberibacter_phage	5.4e-21	54.8
WP_015453023.1\|1182272_1183658_+	DEAD/DEAH box helicase	A0A1L2K1J1	Liberibacter_phage	4.7e-240	89.2
WP_015453024.1\|1183650_1184010_+	DNA ligase NAD-dependent	A0A1L2K1J5	Liberibacter_phage	1.3e-64	99.2
WP_015453025.1\|1184011_1184584_+	guanylate kinase	A0A1L2K1J4	Liberibacter_phage	3.9e-108	100.0
WP_031935107.1\|1184628_1185042_+	hypothetical protein	E7DUN1	Liberibacter_phage	3.5e-34	88.4
WP_015453027.1\|1185252_1185993_+	collagen-like protein	A0A1L2K5V2	Liberibacter_phage	1.2e-21	98.3
WP_015453028.1\|1186048_1186522_-	hypothetical protein	A0A1L2K1K3	Liberibacter_phage	1.5e-84	100.0
WP_015453029.1\|1186518_1186791_-	hypothetical protein	A0A1L2K1J8	Liberibacter_phage	5.5e-44	98.9
WP_015453030.1\|1186878_1187043_-	hypothetical protein	E7DUN5	Liberibacter_phage	4.1e-18	98.0
WP_015453031.1\|1187358_1187895_+	hypothetical protein	A0A1L2K1J7	Liberibacter_phage	8.5e-65	98.5
WP_144052211.1\|1187891_1188302_+	hypothetical protein	A0A1L2K1J7	Liberibacter_phage	1.1e-51	99.3
WP_015453033.1\|1188322_1188799_-	hypothetical protein	A0A1L2K1F9	Liberibacter_phage	4.3e-84	99.4
WP_015453034.1\|1188795_1189068_-	hypothetical protein	A0A1L2K1G2	Liberibacter_phage	1.9e-44	100.0
WP_015453035.1\|1189060_1190245_-	hypothetical protein	A0A1L2K1F8	Liberibacter_phage	1.4e-200	99.7
WP_015453036.1\|1190241_1192671_-	hypothetical protein	A0A1L2K1G1	Liberibacter_phage	0.0e+00	99.8
WP_015453037.1\|1192670_1193894_-	hypothetical protein	A0A1L2K1G0	Liberibacter_phage	3.6e-228	99.8
WP_015453038.1\|1193877_1196139_-	hypothetical protein	E7DUJ6	Liberibacter_phage	0.0e+00	99.9
WP_041186043.1\|1196630_1197857_-	hypothetical protein	A0A1L2K1G5	Liberibacter_phage	2.4e-224	99.8
WP_015453041.1\|1198436_1200134_-	hypothetical protein	A0A1L2K1R5	Liberibacter_phage	0.0e+00	99.6
WP_051044096.1\|1200126_1200645_-	hypothetical protein	A0A1L2K5S2	Liberibacter_phage	1.1e-96	100.0
WP_015453043.1\|1200641_1201673_-	hypothetical protein	A0A1L2K1H1	Liberibacter_phage	5.8e-195	99.7
WP_015453044.1\|1201685_1202426_-	hypothetical protein	A0A1L2K1H4	Liberibacter_phage	4.7e-130	99.6
WP_015453045.1\|1202437_1202710_-	hypothetical protein	A0A1L2K1G8	Liberibacter_phage	1.5e-41	100.0
WP_015453046.1\|1202706_1204326_-\|head,tail	head-to-tail joining protein	A0A1L2K1H0	Liberibacter_phage	8.5e-310	99.8
WP_015453047.1\|1204328_1205876_-\|terminase	phage terminase large subunit	E7DUK7	Liberibacter_phage	7.0e-277	88.6
WP_051044097.1\|1206410_1206920_-	hypothetical protein	A0A240FAT8	Liberibacter_phage	3.0e-91	100.0
WP_015453050.1\|1208211_1208757_-	helix-turn-helix transcriptional regulator	A0A1L2JXY7	Liberibacter_phage	3.2e-99	100.0
WP_015453051.1\|1208966_1209188_+	hypothetical protein	A0A1L2K1H5	Liberibacter_phage	1.1e-34	98.6
WP_015453052.1\|1209270_1209663_+	hypothetical protein	E7DUL1	Liberibacter_phage	1.3e-67	100.0
WP_015453053.1\|1209799_1210006_+	hypothetical protein	A0A1L2K5T2	Liberibacter_phage	9.0e-31	100.0
WP_015453054.1\|1209998_1210211_+	hypothetical protein	E7DUL3	Liberibacter_phage	2.0e-33	100.0
WP_015453055.1\|1210242_1210575_+	intrrupted gp229, phage associated protein	A0A1L2K1I0	Liberibacter_phage	3.6e-05	100.0
WP_015453057.1\|1211103_1211448_-	hypothetical protein	A0A1L2K1I2	Liberibacter_phage	3.8e-18	99.1
WP_015453058.1\|1211495_1213868_-	PriCT-2 domain-containing protein	E7DUH6	Liberibacter_phage	0.0e+00	98.5
WP_015453059.1\|1213868_1214258_-	hypothetical protein	A0A240FAU3	Liberibacter_phage	1.5e-26	100.0
WP_015453060.1\|1214275_1214482_-	hypothetical protein	A0A1L2K1I8	Liberibacter_phage	2.6e-30	100.0
WP_015453061.1\|1214937_1215309_+	hypothetical protein	A0A1L2K1S7	Liberibacter_phage	1.5e-63	100.0
WP_012778343.1\|1215398_1215722_+	hypothetical protein	A0A1L2K5U1	Liberibacter_phage	1.7e-52	100.0
WP_015453062.1\|1215849_1217016_+	DUF2800 domain-containing protein	A0A240FAU6	Liberibacter_phage	3.1e-221	99.7
WP_015453063.1\|1217186_1217978_+	phage repressor protein	A0A220A2W2	Liberibacter_phage	1.8e-148	100.0
WP_015453064.1\|1217995_1218646_+	DUF2815 family protein	A0A220A2W5	Liberibacter_phage	3.5e-121	100.0
WP_015453065.1\|1218649_1220677_+	DNA polymerase from bacteriophage origin	A0A1L2K1J0	Liberibacter_phage	0.0e+00	100.0
WP_015453066.1\|1220673_1220985_+	VRR-NUC domain-containing protein	A0A220A2X3	Liberibacter_phage	4.6e-55	100.0
WP_015453067.1\|1220969_1222355_+	DEAD/DEAH box helicase	A0A1L2K1J1	Liberibacter_phage	3.6e-272	100.0
WP_012778351.1\|1222347_1222707_+	DNA ligase	A0A1L2K1J5	Liberibacter_phage	3.3e-65	100.0
WP_015453068.1\|1222708_1223266_+	guanylate kinase	A0A1L2K1J4	Liberibacter_phage	6.1e-98	98.3
WP_144052212.1\|1223429_1223780_+	guanylate kinase	E7DUI9	Liberibacter_phage	1.7e-42	88.6
WP_015453070.1\|1223783_1224257_-	hypothetical protein	E7DUF0	Liberibacter_phage	1.2e-83	100.0
WP_015453071.1\|1224253_1224526_-	hypothetical protein	E7DUF1	Liberibacter_phage	1.9e-44	100.0
WP_040215674.1\|1224518_1224866_-	hypothetical protein	G1CCG2	Liberibacter_phage	7.2e-57	94.8
WP_015453073.1\|1226909_1229504_-	hypothetical protein	A0A1L2JXX5	Liberibacter_phage	0.0e+00	99.5
WP_015453074.1\|1229500_1230937_-	hypothetical protein	A0A1L2JXX4	Liberibacter_phage	7.2e-276	100.0
WP_015453075.1\|1230954_1233078_-	hypothetical protein	E7DUF6	Liberibacter_phage	0.0e+00	89.3
WP_015453076.1\|1233074_1233596_-	hypothetical protein	E7DUF7	Liberibacter_phage	1.8e-83	98.2
WP_144052214.1\|1233576_1237338_-	hypothetical protein	A0A1L2JXW4	Liberibacter_phage	0.0e+00	99.9
WP_015453078.1\|1237644_1239381_-	hypothetical protein	A0A1L2JXX0	Liberibacter_phage	0.0e+00	100.0
WP_015453079.1\|1239373_1239901_-	hypothetical protein	A0A1L2JYY9	Liberibacter_phage	1.2e-100	100.0
WP_015453080.1\|1239907_1240867_-	hypothetical protein	A0A1L2K2G2	Liberibacter_phage	8.7e-185	100.0
WP_015453081.1\|1240892_1241594_-	hypothetical protein	A0A1L2JXY9	Liberibacter_phage	1.8e-102	100.0
WP_015453082.1\|1241604_1241934_-	hypothetical protein	A0A1L2JXY6	Liberibacter_phage	3.8e-55	100.0
WP_015453083.1\|1241926_1243597_-\|head,tail	head-tail joining protein	A0A1L2JXZ4	Liberibacter_phage	0.0e+00	100.0
WP_015453084.1\|1243593_1243926_-	hypothetical protein	A0A1L2JXY8	Liberibacter_phage	1.0e-36	100.0
WP_015453085.1\|1243922_1244348_-	hypothetical protein	NA	NA	NA	NA
WP_015453086.1\|1244334_1245870_-\|terminase	phage terminase large subunit	E7DUG6	Liberibacter_phage	2.5e-311	99.2
WP_015453087.1\|1246404_1246893_-\|transposase	transposase	E7DUK8	Liberibacter_phage	9.4e-87	100.0
WP_015453088.1\|1247996_1248614_-	helix-turn-helix transcriptional regulator	E7DUG8	Liberibacter_phage	4.2e-108	100.0
WP_015453089.1\|1248783_1249386_+	hypothetical protein	E7DUG9	Liberibacter_phage	3.7e-93	99.4
WP_015453090.1\|1249447_1249840_+	hypothetical protein	E7DUL1	Liberibacter_phage	9.0e-56	88.5
WP_015453091.1\|1249976_1250183_+	hypothetical protein	A0A1L2K5T2	Liberibacter_phage	7.6e-30	98.5
WP_015453054.1\|1250175_1250388_+	hypothetical protein	E7DUL3	Liberibacter_phage	2.0e-33	100.0
WP_015453055.1\|1250419_1250752_+	intrrupted gp229, phage associated protein	A0A1L2K1I0	Liberibacter_phage	3.6e-05	100.0
WP_015453092.1\|1251005_1251317_-	hypothetical protein	A0A220A2V8	Liberibacter_phage	1.6e-18	89.3
WP_015453093.1\|1251364_1253734_-	PriCT-2 domain-containing protein	A0A1L2JXZ8	Liberibacter_phage	0.0e+00	97.1
WP_015453059.1\|1253734_1254124_-	hypothetical protein	A0A240FAU3	Liberibacter_phage	1.5e-26	100.0
WP_015453060.1\|1254141_1254348_-	hypothetical protein	A0A1L2K1I8	Liberibacter_phage	2.6e-30	100.0
WP_015453061.1\|1254804_1255176_+	hypothetical protein	A0A1L2K1S7	Liberibacter_phage	1.5e-63	100.0
WP_012778343.1\|1255265_1255589_+	hypothetical protein	A0A1L2K5U1	Liberibacter_phage	1.7e-52	100.0
WP_015453062.1\|1255716_1256883_+	DUF2800 domain-containing protein	A0A240FAU6	Liberibacter_phage	3.1e-221	99.7
WP_015453063.1\|1257053_1257845_+	phage repressor protein	A0A220A2W2	Liberibacter_phage	1.8e-148	100.0
WP_015453064.1\|1257862_1258513_+	DUF2815 family protein	A0A220A2W5	Liberibacter_phage	3.5e-121	100.0
WP_015453065.1\|1258516_1260544_+	DNA polymerase from bacteriophage origin	A0A1L2K1J0	Liberibacter_phage	0.0e+00	100.0
WP_015453066.1\|1260540_1260852_+	VRR-NUC domain-containing protein	A0A220A2X3	Liberibacter_phage	4.6e-55	100.0
WP_015453067.1\|1260836_1262222_+	DEAD/DEAH box helicase	A0A1L2K1J1	Liberibacter_phage	3.6e-272	100.0
WP_012778351.1\|1262214_1262574_+	DNA ligase	A0A1L2K1J5	Liberibacter_phage	3.3e-65	100.0
WP_012778352.1\|1262575_1263136_+	guanylate kinase	A0A1L2JY06	Liberibacter_phage	2.0e-104	100.0
WP_012778353.1\|1263128_1263320_+	hypothetical protein	NA	NA	NA	NA
WP_012778354.1\|1263316_1264363_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7L5T4	uncultured_marine_virus	1.7e-21	26.1
1264405:1264419	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection