CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020522	Legionella pneumophila subsp. pneumophila LPE509 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
NC_020521	Legionella pneumophila subsp. pneumophila LPE509, complete sequence	0 crisprs	DEDDh,csa3,WYL,cas3,RT,DinG,PD-DExK	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

956916 : 1037250

Ralstonia_virus(15.38%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010945905.1\|956916_958092_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	5.2e-14	21.2
WP_010947883.1\|958262_959366_+	adenosylhomocysteinase	NA	NA	NA	NA
WP_010947882.1\|959487_960498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015444197.1\|960745_961360_-	hypothetical protein	NA	NA	NA	NA
WP_010947880.1\|961518_961893_-	VOC family protein	NA	NA	NA	NA
WP_010947879.1\|962082_962856_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_025862533.1\|962842_963529_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_010947877.1\|963688_964948_-	Dot/Icm T4SS effector Lem19	NA	NA	NA	NA
WP_010947876.1\|965082_965595_-	hypothetical protein	NA	NA	NA	NA
WP_015444203.1\|965832_966261_+	hypothetical protein	NA	NA	NA	NA
WP_010947874.1\|966476_967322_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010947872.1\|968618_970877_-	DUF3141 domain-containing protein	NA	NA	NA	NA
WP_010947871.1\|971405_972854_+	lpg2160 family Dot/Icm T4SS effector	NA	NA	NA	NA
WP_010947870.1\|973146_974268_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015444207.1\|974296_974920_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015444208.1\|975339_979839_-	T4SS effector NAD-dependent ubiquitin ligase SdeA	NA	NA	NA	NA
WP_015444209.1\|980217_985983_-	NAD-dependent ubiquitin ligase	NA	NA	NA	NA
WP_010947866.1\|986263_988885_-	T4SS meta-effector polyglutamylase SidJ	NA	NA	NA	NA
WP_015444210.1\|988937_990059_-	Dot/Icm T4SS effector deubiquitinase DupA/LaiE	NA	NA	NA	NA
WP_015444212.1\|990272_994874_-	Dot/Icm T4SS effector SdeC/LaiC	NA	NA	NA	NA
WP_015444213.1\|995164_996961_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.5e-28	27.5
WP_010947862.1\|997093_997960_-	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	1.1e-53	39.2
WP_010947861.1\|998018_998600_-	hypothetical protein	NA	NA	NA	NA
WP_010947860.1\|998833_999193_-	lpg2149 family Dot/Icm T4SS effector	NA	NA	NA	NA
WP_010947859.1\|999280_1000561_-	lpg2148 family Dot/Icm T4SS effector	NA	NA	NA	NA
WP_010947858.1\|1000636_1002085_-	Dot/Icm T4SS effector MavC	NA	NA	NA	NA
WP_010947857.1\|1002498_1004949_+	response regulator	A0A1V0SGX0	Hokovirus	1.0e-24	34.5
WP_015444215.1\|1004938_1005358_+	response regulator	NA	NA	NA	NA
WP_010947855.1\|1005388_1005907_-	F-box-like domain-containing protein	NA	NA	NA	NA
WP_010947854.1\|1006139_1007081_+	hypothetical protein	NA	NA	NA	NA
WP_010947853.1\|1007175_1007436_-	hypothetical protein	NA	NA	NA	NA
WP_015444218.1\|1007458_1008223_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.6e-08	25.1
WP_010947851.1\|1008317_1008698_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025862572.1\|1008831_1009419_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_010947849.1\|1009430_1010345_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010947848.1\|1010702_1012319_+	Dot/Icm T4SS effector LegK2	NA	NA	NA	NA
WP_015444219.1\|1012677_1013991_+	TolC family protein	NA	NA	NA	NA
WP_010947846.1\|1013987_1014956_+	efflux RND transporter periplasmic adaptor subunit	S5VL44	Leptospira_phage	3.4e-11	25.6
WP_010947845.1\|1014956_1018157_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_015444221.1\|1018258_1019515_-	MFS transporter	NA	NA	NA	NA
WP_010947843.1\|1019738_1021277_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_010947842.1\|1021295_1021838_+	Dot/Icm type IV secretion system effector LegA6	NA	NA	NA	NA
WP_027223817.1\|1021812_1022022_+	hypothetical protein	NA	NA	NA	NA
WP_010947840.1\|1022053_1022350_+	hypothetical protein	NA	NA	NA	NA
WP_010947839.1\|1022357_1023020_+	hypothetical protein	NA	NA	NA	NA
WP_010947838.1\|1023052_1023541_-	L,D-transpeptidase	NA	NA	NA	NA
WP_010947837.1\|1024018_1025896_+	KUP/HAK/KT family potassium transporter	A7J6G4	Paramecium_bursaria_Chlorella_virus	1.8e-64	32.9
WP_010947836.1\|1025945_1026407_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_015444226.1\|1026574_1026862_-	hypothetical protein	NA	NA	NA	NA
WP_010947834.1\|1026917_1027829_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_010947833.1\|1027985_1029392_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.1e-58	34.1
WP_010947832.1\|1029631_1029841_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	8.3e-16	63.9
WP_010947831.1\|1030068_1031487_-\|transposase	IS4-like element ISLpn4 family transposase	Q9JMP3	Wolbachia_phage	1.5e-55	32.9
WP_010947830.1\|1031645_1032671_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010947829.1\|1032723_1033899_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	5.2e-14	21.2
WP_015444229.1\|1033931_1035350_-\|transposase	IS4-like element ISLpn3 family transposase	Q9JMP3	Wolbachia_phage	2.3e-56	32.9
WP_010947828.1\|1035859_1036813_+	Abi family protein	A3QSC6	Clostridium_virus	4.8e-34	31.8
WP_010947827.1\|1036866_1037250_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1203886 : 1214010

Micromonas_pusilla_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015444335.1\|1203886_1205821_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6
WP_010947740.1\|1206010_1207150_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.6e-23	26.9
WP_015444336.1\|1207245_1208358_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.9e-51	35.2
WP_010947738.1\|1208566_1209715_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-126	58.5
WP_010947737.1\|1209733_1211059_+	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.4e-47	31.2
WP_015444337.1\|1211182_1212190_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010947735.1\|1212321_1214010_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.0e-16	30.4

DBSCAN-SWA_3

2117722 : 2123659

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946916.1\|2117722_2118547_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-53	43.9
WP_010946915.1\|2118543_2120181_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.3
WP_010946914.1\|2120306_2120774_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-23	49.1
WP_010946913.1\|2120781_2121990_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.4e-99	48.7
WP_010946912.1\|2121986_2122601_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.5e-22	38.4
WP_010946911.1\|2122585_2123659_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.8e-30	27.8

DBSCAN-SWA_4

2516539 : 2523379

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946577.1\|2516539_2517337_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-21	33.8
WP_010946576.1\|2517704_2518667_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_011213328.1\|2518680_2519208_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946574.1\|2519204_2519774_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_010946573.1\|2519754_2520264_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_010946572.1\|2520260_2520986_+	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_010946571.1\|2521019_2521598_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-55	53.2
WP_014841226.1\|2521575_2522610_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.7e-75	47.3
WP_011945950.1\|2522602_2523379_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.9e-57	48.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage