CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020508	Helicobacter pylori OK113, complete genome	1 crisprs	cas14j,cas2,DEDDh	3	0	0	0

Cas Category Instructions

Results visualization

1. NC_020508

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_020508_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020508_1

574895-575292

Orphan

Consensus_repeat	Method
TCTAAAAGTTTTTTCGCTTCAGGCGTGAGCAATTTCTCGCATTCTTTTTTCTC	PILER-CR

3 spacers

The CRISPR arrays of NC_020508_1

>merge|NC_020508|1|574895-575292|PILER-CR
TCTAAAAGTTTTTTCGCTTCAGGGGTGAGCAATTTCTCGCATTCTTTTTTCTCTTTTTCATTCCTAGCTCTTGATACGCAGTCTTTATAAGCCTTAACGCTCTCTTTAGCTTCTTCTAAAAGTTTTTTCGCTTCAGGCGTGAGTAGTTTCTCGCATTCTTTTTTCTCAGCTTCAGTTTTGGCTTGAGATACGCAATCCAAATAAGCCTTAACGCTCTCTTTGGCTTCTTCTTCTAAAAGTTTTTTCGCTTCAGGCGTGAGCAATTTCTCGCATTCTTTTTTCTCAGCTTCAGTTTTGGCTTGAGATACACAGTCTTTATAAGCTTTAAGACTCTCTTTAGCTTCTTCTAAAAGTTTTTTCGCTTCAGGCGTGAGCAATTTCTCGCATTCTTTTTTCTC

>NC_020508|1|1|574895-575292|PILER-CR
TCTAAAAGTTTTTTCGCTTCAGGGGTGAGCAATTTCTCGCATTCTTTTTTCTC	TTTTTCATTCCTAGCTCTTGATACGCAGTCTTTATAAGCCTTAACGCTCTCTTTAGCTTCT
TCTAAAAGTTTTTTCGCTTCAGGCGTGAGTAGTTTCTCGCATTCTTTTTTCTC	AGCTTCAGTTTTGGCTTGAGATACGCAATCCAAATAAGCCTTAACGCTCTCTTTGGCTTCTTCT
TCTAAAAGTTTTTTCGCTTCAGGCGTGAGCAATTTCTCGCATTCTTTTTTCTC	AGCTTCAGTTTTGGCTTGAGATACACAGTCTTTATAAGCTTTAAGACTCTCTTTAGCTTCT
TCTAAAAGTTTTTTCGCTTCAGGCGTGAGCAATTTCTCGCATTCTTTTTTCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020508.1\|WP_015427701.1\|561554_562460_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|224081
NC_020508.1\|WP_015427712.1\|586437_587568_+\|type-IV-secretion-system-apparatus-protein-CagM	unknown	unknown	unknown
NC_020508.1\|WP_041199691.1\|581453_582101_+\|cag-pathogenicity-island-translocation-protein-CagU	unknown	unknown	unknown
NC_020508.1\|WP_015427700.1\|560223_561555_+\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NC_020508.1\|WP_015427704.1\|564554_564902_+\|hypothetical-protein	unknown	unknown	unknown
NC_020508.1\|WP_041199759.1\|563527_564382_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NC_020508.1\|WP_000418795.1\|570881_571481_-\|cag-pathogenicity-island-translocation-protein-CagZ	unknown	unknown	gnl\|CDD\|72471
NC_020508.1\|WP_015427705.1\|566812_567322_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	unknown
NC_020508.1\|WP_015427708.1\|577199_578765_-\|type-IV-secretion-system-apparatus-protein-CagX	unknown	unknown	gnl\|CDD\|226035
NC_020508.1\|WP_015427710.1\|583158_583758_-\|cag-pathogenicity-island-protein-CagS	unknown	unknown	gnl\|CDD\|374741
NC_020508.1\|WP_000488768.1\|565357_566803_+\|type-IV-secretion-system-apparatus-protein-Cag3	unknown	unknown	gnl\|CDD\|273066
NC_020508.1\|WP_000776460.1\|582116_582959_+\|type-IV-secretion-system-apparatus-protein-CagT	unknown	unknown	gnl\|CDD\|372486
NC_020508.1\|WP_000133885.1\|569884_570877_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-VirB11	unknown	unknown	gnl\|CDD\|274301
NC_020508.1\|WP_080105183.1\|584572_584953_+\|cag-pathogenicity-island-protein	unknown	unknown	unknown
NC_020508.1\|WP_015427702.1\|562456_563449_+\|cell-shape-determining-L,D-carboxypeptidase-Csd6	unknown	unknown	gnl\|CDD\|225577
NC_020508.1\|WP_173387005.1\|585007_585163_+\|hypothetical-protein	unknown	unknown	unknown
NC_020508.1\|WP_033588846.1\|585669_586014_-\|cag-pathogenicity-island-protein-CagP	unknown	unknown	unknown
NC_020508.1\|WP_015427706.1\|567629_569876_-\|VirD4-family-type-IV-secretion-system-ATPase-Cag5	unknown	unknown	gnl\|CDD\|226036
NC_020508.1\|WP_015427709.1\|578817_580425_-\|cag-pathogenicity-island-VirB6-family-T4SS-protein-CagW	unknown	unknown	unknown
NC_020508.1\|WP_000900765.1\|580429_581188_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagV	unknown	unknown	gnl\|CDD\|226259

Protein	Function_ID	Function_description	E-value
NC_020508.1\|WP_015427701.1\|561554_562460_+\|GTPase-Era	gnl\|CDD\|224081	COG1159, Era, GTPase [General function prediction only].	9.62559e-121
NC_020508.1\|WP_000776460.1\|582116_582959_+\|type-IV-secretion-system-apparatus-protein-CagT	gnl\|CDD\|372486	pfam13117, Cag12, Cag pathogenicity island protein Cag12. This is a Proteobacterial family of Cag pathogenicity island proteins.	7.8197e-28
NC_020508.1\|WP_041199759.1\|563527_564382_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.16254e-23
NC_020508.1\|WP_000418795.1\|570881_571481_-\|cag-pathogenicity-island-translocation-protein-CagZ	gnl\|CDD\|72471	pfam09053, CagZ, CagZ. CagZ is a 23 kDa protein consisting of a single compact L-shaped domain, composed of seven alpha-helices that run antiparallel to each other. 70% of the residues are in alpha-helix conformation and no beta-sheet is present. CagZ is essential for the translocation of the pathogenic protein CagA into host cells.	3.21125e-123
NC_020508.1\|WP_015427708.1\|577199_578765_-\|type-IV-secretion-system-apparatus-protein-CagX	gnl\|CDD\|226035	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion].	6.86467e-63
NC_020508.1\|WP_015427710.1\|583158_583758_-\|cag-pathogenicity-island-protein-CagS	gnl\|CDD\|374741	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori. CagS is a family of proteins from the pathogenicity island of Helicobacter pylori. The gene lies just downstream of the cluster whose protein-products resemble those of the Vibrio proteins that form the structural core of T4SS. The exact function of CagS is not known.	1.20127e-111
NC_020508.1\|WP_000488768.1\|565357_566803_+\|type-IV-secretion-system-apparatus-protein-Cag3	gnl\|CDD\|273066	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. [Protein synthesis, tRNA aminoacylation].	0.00788565
NC_020508.1\|WP_000133885.1\|569884_570877_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-VirB11	gnl\|CDD\|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	2.07028e-143
NC_020508.1\|WP_015427702.1\|562456_563449_+\|cell-shape-determining-L,D-carboxypeptidase-Csd6	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	4.57341e-106
NC_020508.1\|WP_015427706.1\|567629_569876_-\|VirD4-family-type-IV-secretion-system-ATPase-Cag5	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	0
NC_020508.1\|WP_015427700.1\|560223_561555_+\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_020508.1\|WP_000900765.1\|580429_581188_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagV	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	1.69209e-70

>NC_020508.1|WP_000418795.1|570881_571481_-|cag-pathogenicity-island-translocation-protein-CagZ
MELGFNEAERQKILDSNRSLMGNANEVRDKFIQNYASSLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFMCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGRKLNEIVQDIGTKYIILSKNKTYLTSLERAKLITQLKLNLE
>NC_020508.1|WP_000133885.1|569884_570877_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-VirB11
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKHR
>NC_020508.1|WP_015427706.1|567629_569876_-|VirD4-family-type-IV-secretion-system-ATPase-Cag5
MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFTKAQKKAFKDKANQPQKKKSFKEIIIDGLKERVKTFGFWLQAILLLSYSFITSGLFFLILLGNFYDENRLHESDDDLFDIWIYAIQDFPAYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITFFVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPTRSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQIDTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTMFFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNIRVLSPATRNMWNNFKTMGGAKETYSSVQGVYTSAFAPYNNAMIRNFTSANDFDFRRLRIDAVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLETFVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRSIDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQATFYDDLQAAKTRGELSYDKSLVPVGSSEL
>NC_020508.1|WP_015427705.1|566812_567322_+|transglycosylase-SLT-domain-containing-protein
MFEKWIGLFLLLNSLAYPCQKVTISFKQYENLVHIHQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHITLNTAKKFYPTYSKTLLKYKLLNDVDFAISLAKQILKENFDYYKQKHPSKSVYQLVEMAVGAYNGGMKHNPNGAYVKKFRCVYSQVRYNE
>NC_020508.1|WP_000488768.1|565357_566803_+|type-IV-secretion-system-apparatus-protein-Cag3
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEARQHQQIPDHKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRNAKFVLKINENLPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTSDSATQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPRTSNPDETMRVVKEKENYNGLLVDKETTIKRSYQGTLISENSYSKKTPLNPNDLRSLEEEIKSYYIKSNGLCYANGISLYVKIKNDPYKEGMLCGYESIQNLLSPLKDKLKYDKQKLQKALLKDSK
>NC_020508.1|WP_015427704.1|564554_564902_+|hypothetical-protein
MADTINTTEATHETKKPNAFVIFFKNNLTDKRYDALGLIGAGVLCCVLSGAIGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQPKAATTVNNETQKFQATSVTNKPTEAKETKD
>NC_020508.1|WP_041199759.1|563527_564382_-|sel1-repeat-family-protein
MFKDFYRTTLSFLKPLLLLLVLLLPFSLCIADEYISISDDWDERARNQWDEIARNHKTYYFENGLDHFNQGQYKQAFKDFKLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQLYAQNAIKGYGSGLLGGALILGRMQAEGLGMKKDLKQVLKTYRYVVRMFSNKSTNYFANNFRLPNLAFTSMLIGSRFIDLSGLSANPIKFGKKFGILVKKSTQIKDKTLLWEDIAEISSNITLLKQQMGEILYRIGIAYKEGLGTRKQKSRAKKFLQKSAEFGYEKAMEAL
>NC_020508.1|WP_015427702.1|562456_563449_+|cell-shape-determining-L,D-carboxypeptidase-Csd6
MKKILPALLVGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWTEELQNKDTDFGYYQNKQFLFVADKSKPSLEFYEIDNNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWTRGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVAFDQDYKAYQQNKLSYSSNSQKELYVEIENNQVSIIMEK
>NC_020508.1|WP_015427701.1|561554_562460_+|GTPase-Era
MKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHVLALSKIDTATHKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNVLLECISKHLSPSAWLFEKDLMSDEKMHDIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAHIIVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYIYQRNRD
>NC_020508.1|WP_015427700.1|560223_561555_+|HslU--HslV-peptidase-ATPase-subunit
MSKLNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIVQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEQDKIKKTLSVKEAKEALKTEISDTLLDSEAIKIEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGPIKTEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQALLKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTITKELVQSKLEDLVADENLVKYIL
>NC_020508.1|WP_015427708.1|577199_578765_-|type-IV-secretion-system-apparatus-protein-CagX
MEQAFFKKIVGCFCLGYLFLSSVIEAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDSKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVKQRAKDKINIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK
>NC_020508.1|WP_015427709.1|578817_580425_-|cag-pathogenicity-island-VirB6-family-T4SS-protein-CagW
MFNIKRTFLITIMSFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYASIGASGSGKSSGQGVIEALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSMLDNLSNKIRNFTKGGIEDNVKGNVLLQIISSITAQASTNITADGLIWLIGKEFTANKLQNNATAMLAFAALESVVKGADAAVLPAYGVVNLPDIIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISSNIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYFGLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAGAFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIASLITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMIGRVGGSMFKG
>NC_020508.1|WP_000900765.1|580429_581188_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagV
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMALNIAAVASIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKIKEVESKNKALKQ
>NC_020508.1|WP_041199691.1|581453_582101_+|cag-pathogenicity-island-translocation-protein-CagU
MNDTTQHHGSNSLNAPSPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAKQRIMKAYAHSFLGYIGGLEHLLGLCMGGIFVLFAIYFVFLRTSKNTDLVESLKTKLKLQYFYYAFGAGAVLFFGLETIRSIYELYILGIGSTNDKVLFILKNICFIGMGYLIYKVIKVIGIKNFINGLFTSKKQE
>NC_020508.1|WP_000776460.1|582116_582959_+|type-IV-secretion-system-apparatus-protein-CagT
MKLRASVLIGATILCLILSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTPFMVQVKLPNYKDYLLDNKQVVLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDFYLQPTLNQKGVVMIASNYNDNPNNKEQPQTFDVLQGSQPMLGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSEIFKNGNLNMQAKEEEVREKLQEERENEYLRNQIRSLLSGK
>NC_020508.1|WP_015427710.1|583158_583758_-|cag-pathogenicity-island-protein-CagS
MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYCAVIKSIGVDKFKKVYRLLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA
>NC_020508.1|WP_080105183.1|584572_584953_+|cag-pathogenicity-island-protein
MLSAKTRIRTQSKQELVRPKIKGLVMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMGLNEILGKKFNLPMDNIKNFMMEVLKNGFGSMKNMGSALIGNGFSSSKSDKTANKMSVPQVKL
>NC_020508.1|WP_173387005.1|585007_585163_+|hypothetical-protein
MINKVFSTLNFLLASKETLEQQDKEFSLSGIKELKEKCLYPSDKNNCNINN
>NC_020508.1|WP_033588846.1|585669_586014_-|cag-pathogenicity-island-protein-CagP
MEQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPILFLFALIIKPSFFYYTTYLLLLVSLSVISKYYLLSHANFTMKLIILMTQWQNWFL
>NC_020508.1|WP_015427712.1|586437_587568_+|type-IV-secretion-system-apparatus-protein-CagM
MLARIVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLIFRKQKIKELVDHRAKVLLDLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNPLYKKLLPNPYAYVLNQETFTKEDKERLSYYYPQVKTSSIFKKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLSRKELDNIDYYLQLERNKFDSKAKDIAQKATNTLIFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQSKKSILKKTNEYNIFVDSDPMMSDKTTMQKEHYKIFNFFKTVLSAYRNNVAKNNPFE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_020508_1	1.1\|574948\|61\|NC_020508\|PILER-CR	574948-575008	61	NC_020508.1	573844-573904	1	0.984
NC_020508_1	1.1\|574948\|61\|NC_020508\|PILER-CR	574948-575008	61	NC_020508.1	574396-574456	1	0.984
NC_020508_1	1.3\|575179\|61\|NC_020508\|PILER-CR	575179-575239	61	NC_020508.1	574075-574135	1	0.984
NC_020508_1	1.3\|575179\|61\|NC_020508\|PILER-CR	575179-575239	61	NC_020508.1	574627-574687	1	0.984
NC_020508_1	1.2\|575062\|64\|NC_020508\|PILER-CR	575062-575125	64	NC_020508.1	573958-574021	4	0.938
NC_020508_1	1.2\|575062\|64\|NC_020508\|PILER-CR	575062-575125	64	NC_020508.1	574510-574573	4	0.938

1. spacer 1.1|574948|61|NC_020508|PILER-CR matches to position: 573844-573904, mismatch: 1, identity: 0.984

tttttcattcctagctcttgatacgcagtctttataagccttaacgctctctttagcttc	CRISPR spacer
tttttcattcctagctcttgatacgcagtctttataagccttaacgctctctttagcttc	Protospacer
************************************************************

2. spacer 1.1|574948|61|NC_020508|PILER-CR matches to position: 574396-574456, mismatch: 1, identity: 0.984

tttttcattcctagctcttgatacgcagtctttataagccttaacgctctctttagcttc	CRISPR spacer
tttttcattcctagctcttgatacgcagtctttataagccttaacgctctctttagcttc	Protospacer
************************************************************

3. spacer 1.3|575179|61|NC_020508|PILER-CR matches to position: 574075-574135, mismatch: 1, identity: 0.984

agcttcagttttggcttgagatacacagtctttataagctttaagactctctttagcttc	CRISPR spacer
agcttcagttttggcttgagatacacagtctttataagctttaagactctctttagcttc	Protospacer
************************************************************

4. spacer 1.3|575179|61|NC_020508|PILER-CR matches to position: 574627-574687, mismatch: 1, identity: 0.984

agcttcagttttggcttgagatacacagtctttataagctttaagactctctttagcttc	CRISPR spacer
agcttcagttttggcttgagatacacagtctttataagctttaagactctctttagcttc	Protospacer
************************************************************

5. spacer 1.2|575062|64|NC_020508|PILER-CR matches to position: 573958-574021, mismatch: 4, identity: 0.938

agcttcagttttggcttgagatacgcaatccaaataagccttaacgctctctttggcttc	CRISPR spacer
agcttcagttttggcttgagatacgcaatccaaataagccttaacgctctctttggcttc	Protospacer
************************************************************

6. spacer 1.2|575062|64|NC_020508|PILER-CR matches to position: 574510-574573, mismatch: 4, identity: 0.938

agcttcagttttggcttgagatacgcaatccaaataagccttaacgctctctttggcttc	CRISPR spacer
agcttcagttttggcttgagatacgcaatccaaataagccttaacgctctctttggcttc	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage