CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020888	Thalassolituus oleivorans MIL-1, complete genome	4 crisprs	cas3,csa3,RT,PD-DExK,DEDDh,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	2	24	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020888_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020888_1

140787-140908

Orphan

Consensus_repeat	Method
TGCGGCGGTAAATCAGAAGCCGAAGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020888_1

>merge|NC_020888|1|140787-140908|CRISPRCasFinder
TGTGGCGGTAAGTCAGAAGCCGAAGGCAAATGCGGCGGTAAATCAGAAGCCGAAGGCAAGTGTGGCGGCGACAAAGCAAAGAAGGAAGGTAAGTGCGGCGGTAAATCAGAAGCCGAAGGCAA

>NC_020888|1|1|140787-140908|CRISPRCasFinder
TGTGGCGGTAAGTCAGAAGCCGAAGGCAA	ATGCGGCGGTAAATCAGAAGCCGAAGGCAAGTGTGGCGGCGACAAAGCAAAGAAGGAAGGTAAG
TGCGGCGGTAAATCAGAAGCCGAAGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020888.1\|WP_015485314.1\|131394_131916_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NC_020888.1\|WP_015485318.1\|135659_137108_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|182698
NC_020888.1\|WP_081601171.1\|147840_148551_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NC_020888.1\|WP_144055400.1\|139775_140327_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183583
NC_020888.1\|WP_015485320.1\|138788_139640_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_020888.1\|WP_015485317.1\|134274_135648_+\|Trk-system-potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|236541
NC_020888.1\|WP_025264477.1\|132920_134222_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|236790
NC_020888.1\|WP_015485324.1\|141074_141692_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|311556
NC_020888.1\|WP_144055314.1\|145096_145657_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NC_020888.1\|WP_015485315.1\|131919_132870_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NC_020888.1\|WP_015485334.1\|149712_150582_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NC_020888.1\|WP_015485326.1\|142759_144406_+\|response-regulator	unknown	unknown	gnl\|CDD\|381123
NC_020888.1\|WP_015485327.1\|144425_145085_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_020888.1\|WP_051052443.1\|148651_149587_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NC_020888.1\|WP_015485313.1\|130219_131278_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NC_020888.1\|WP_015485329.1\|145647_146412_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015485319.1\|137264_138752_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NC_020888.1\|WP_015485330.1\|146547_147816_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_020888.1\|WP_015485322.1\|140323_140521_+\|zf-HC2-domain-containing-protein	unknown	unknown	gnl\|CDD\|379219
NC_020888.1\|WP_158505899.1\|141718_142624_-\|lipid-A-biosynthesis-acyltransferase	unknown	unknown	gnl\|CDD\|224476

Protein	Function_ID	Function_description	E-value
NC_020888.1\|WP_015485314.1\|131394_131916_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.80405e-88
NC_020888.1\|WP_015485318.1\|135659_137108_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|182698	PRK10750, PRK10750, Trk system potassium transporter TrkH.	0
NC_020888.1\|WP_081601171.1\|147840_148551_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	3.40564e-120
NC_020888.1\|WP_144055400.1\|139775_140327_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|183583	PRK12544, PRK12544, RNA polymerase factor sigma-70.	3.5504e-76
NC_020888.1\|WP_015485320.1\|138788_139640_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	4.26745e-16
NC_020888.1\|WP_015485317.1\|134274_135648_+\|Trk-system-potassium-transporter-TrkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	0
NC_020888.1\|WP_025264477.1\|132920_134222_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|236790	PRK10901, PRK10901, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	0
NC_020888.1\|WP_015485324.1\|141074_141692_+\|DoxX-family-protein	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	9.52106e-19
NC_020888.1\|WP_144055314.1\|145096_145657_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.44031e-72
NC_020888.1\|WP_015485315.1\|131919_132870_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.59199e-180
NC_020888.1\|WP_015485334.1\|149712_150582_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	1.81778e-176
NC_020888.1\|WP_015485326.1\|142759_144406_+\|response-regulator	gnl\|CDD\|381123	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators. Response regulators share the common phosphoacceptor REC domain and different output domains. This subfamily contains uncharacterized response regulators with TPR repeats as the effector or output domain, which might contain between 3 to 16 TPR repeats (each about 34 amino acids). TPR-containing proteins occur in all domains of life and the abundance of TPR-containing proteins in a bacterial proteome is not indicative of virulence. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members in this subfamily may contain inactive REC domains lacking canonical metal-binding and active site residues.	1.95218e-41
NC_020888.1\|WP_015485327.1\|144425_145085_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.66579e-21
NC_020888.1\|WP_051052443.1\|148651_149587_+\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	2.94138e-62
NC_020888.1\|WP_015485313.1\|130219_131278_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	5.84328e-09
NC_020888.1\|WP_015485319.1\|137264_138752_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.05558e-145
NC_020888.1\|WP_015485330.1\|146547_147816_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NC_020888.1\|WP_015485322.1\|140323_140521_+\|zf-HC2-domain-containing-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000417796
NC_020888.1\|WP_158505899.1\|141718_142624_-\|lipid-A-biosynthesis-acyltransferase	gnl\|CDD\|224476	COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane].	5.8099e-77

>NC_020888.1|WP_015485322.1|140323_140521_+|zf-HC2-domain-containing-protein
MMNCEQATQLLSVGMERKLKLKEQAELKMHLLICSGCRQFAQQVQQLRTIIRATKDSSDKPEEKK
>NC_020888.1|WP_144055400.1|139775_140327_+|sigma-70-family-RNA-polymerase-sigma-factor
MLAFTRLQLANDFAAEDIVQEALAGALKNAASFTRQANLKTWVFAILKHKITDHLRRQYREPQQDSLDECKNCGHSDDQIFNNELFDDRGHWHADAKPQRWGDADRMVHDEQFWRVFDTCLAGLPPEQGRVFMMREFIELDSDEICAALQLSTSNLHVLLYRARLRLRECLEDSWVKAGEKRS
>NC_020888.1|WP_015485320.1|138788_139640_+|universal-stress-protein
MTQIVACIDGSVMSGAVCDAAAWASQRAQAPLKLLHVLEKNDVPAAATLAGNIGLGSRENLLLELAELDEKRNKLALEHGRDLLDDAEIRSKADGAIAVTKQQRHGHLLNTLIEGQDDIRLLVIGRQGNSHKPLAHTIGSHLDDVIRSLHKPILVAMNDFKAPQSFMVAFDGSETAQRALDAYANSTVLVGLPCHLVMVGHDDEAHQQKLESAAALLRSRDFEVTVARLSGDVQSALAAYQVQHDIGLMVMGAYGHSRIRQFFVGSHTRKMVSESQIPLLLLR
>NC_020888.1|WP_015485319.1|137264_138752_+|SulP-family-inorganic-anion-transporter
MLNSIKRDWLANIRGDLLAGTVVALALIPEAIAFSIIAGVDPKVGLYASFCIAVIISFVGGRPGMISAATGAMSLLMVTLVKDHGLEYLLAASLLTGVIQILAGYLKLGDLMRFVSRSVVTGFVNALAILIFMAQLPELTDVTWHVYAMTAGGLAIIYLFPYVPKIGSWLPSPLVCILVITAIAMIWGIDVRTVADMGELPDTLPIFLWPDVPLTLETLWIILPYSVALAAVGLLESMMTATIVDELTDTESDKNRECKGQGVANIGSSLLGGMAGCAMIGQSIINVKSGGRGRLSTFFAGFLLLIMVVFLDEWIGQIPMAALVAVMIMVSIGTFSWESFRNLKQHPLSTNIVMISTVVVVVATHNLALGVLVGVLLASLFFANKIGRFMVVKQEQVNAEERVYRVVGQVFFASSDAFAKSFDFREVVTRVTIDLTHAHFWDITSVSALDKVVIKFRREGADVELIGLNEASATIVDRFGVHDKPEEVEKLLAGH
>NC_020888.1|WP_015485318.1|135659_137108_+|TrkH-family-potassium-uptake-protein
MHLTVIARVLGIFLMLFSLTMLPPILVSMWYNDGATQAFSMAMGLIFGIGFLSWMPVRFVRQELRTRDGFLIAALFWFTLGLAGTLPFILAEDPGLSFADAFFESLSGWTTTGATVMTGLEYLPKSILWYRQQLQWLGGMGIIVLAVAILPMLGIGGMQLFRAEMPGPLKDSKLTPRITETAKALWYIYLSLTIACALAYWLAGMNTFDAIAHSFSTVGIGGFSTYDASMGHFDSPLIEMIAVFFMLVAALNFSLHFYAWRNRSITHYWRDSEVRFFTFIIIGGIIITITALWLTDTYGITESIRYGIFEMVSVATTAGFATADFSGWPVFLPVMLFMAAFIGGCAGSTGGGMKVIRVLLVYKQGVREIRRLIHPNAIIPVKLGRMPVSDRILESVWGFFALYVVTFMVMMLALMATGLDQVTAFSAVGSCLNNLGPGLGDVAVHYGGISDTAKWLLALTMLLGRLEIFTLLVLLSPTFWRS
>NC_020888.1|WP_015485317.1|134274_135648_+|Trk-system-potassium-transporter-TrkA
MKIIILGAGQVGGTLAENLANEQNDITVIDTDQVRLRELADRIDIKTVYGHGSYPQVMRDAGADDADMLVAVTNSDETNMVACQIAYTLFRTPTKISRIRSNAYLKQPELFKNDAFPIDVLISPEQVVTNYISRLLQYPGALQVLDFADERVQLVAVKAYYGGPLVGQAIHTLKDHLPNIDARVAAVFRRNKAIEPTGDTVIEADDEVFFVAARAHIKKVMNELRRAEDSYKRVMIAGGGNIGYRLAKTLEKDYKMKLIEHDEERARYLSENLTSTVVLLGSATDKALLEEENIENTDVFCALTNDDEVNIMSSLLAKRLGARKVMTLINKAAYVDLVQGGMIDVAISPQQATIGSLLTHVRRGDVVNVHSLRRGAAEAIEAIAHGDSHSSKVVGRRIKDISLPPGTTIGAIVRGEEVIMATSDVVVESNDHVILFVMNKRHISDVERLFQVGLGFF
>NC_020888.1|WP_025264477.1|132920_134222_+|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MSARVAAIHAVLGVMQGQSLNQLLPPLEARVDAADRGFLRDLALGSCRHYFRLNAITKMLLKRPFGEEDQDLHALMIVGLYQLEIQKKAPHAAVHATVESCEELGKGYAKSVVNACLRRYAREYEELRPPLDDNPVTATSHPKWLVKMLTKAWPEQWQNILTENNERPPLCLRVNRRHGSRDQYLQRLQDAGIEASSAPYSADGIYLVESCDVTALPGFADGDFSVQDEAAQLAASILAPQDGERILDACAAPGGKTCHILEYANADVTAVDLEEKRLPRVHENLARLQLSANVVCGDMCAIESWWDGQQYDAILLDVPCSATGVIRRHPDIKLLRRREDIEQLALVQQAVLASAWAMLKPGGRLLYATCSVMPEENSEQIRRFVAANADVTLTTLDKDWGTACNAGRQLFPQRLGHDGFYYALLVKQKAAKA
>NC_020888.1|WP_015485315.1|131919_132870_+|methionyl-tRNA-formyltransferase
MPLRIVFAGTPDFAADHLRALVASEHEVVAVYSQPDRPAGRGKKLQPSPVKQVALEHDIAVYQPLNFKQEADIADLRALNADVMVVVAYGLLLPQAVLDAPKYGCLNVHASLLPRWRGAAPIQRCIEAGDKVTGITIMQMNAGLDTGDMLAKITTGIFATDTGGSLHDRLAQLGPKSMLAVLADVEAGTLKPEVQNNGLACYAHKLSKQEALIDWSQSAETLALRIRAFNPFPMAYTLLGDERIRVLAAEARDSMTTLQPGTIASVANEGIDVACGEGTLRLTQVQLAGKKAMSVADVINGQPKLFQPLYVLAADL
>NC_020888.1|WP_015485314.1|131394_131916_+|peptide-deformylase
MAILEILEYPDQRLRTVAKPVTEFDNRIHRIVDDMFETMYDAPGIGLAASQVDIHERIITIDVSEEKTEPLVFINPEITVLEGEMETMQEGCLSVPGFYEDVTRVEHCLVKAFDRNGDAFEMECRGLLAVCIQHEIDHLEGKLMVDYISPLKRNRIKDKLEKKHKLEARQGKR
>NC_020888.1|WP_015485313.1|130219_131278_-|LysM-peptidoglycan-binding-domain-containing-protein
MSKTIKRLLIAGLMCLSTTAIALDLKTDAPQRYTVQKGDTLWDISERFTDEAWQWPEIWYLNPQIENPHLIYPGDEIGLITVGGQQRVGVTQRGDTSRTVKLSPGDVKLMATARVEPIESAIPAIPMDAIRGFLRNHRVVDPAELAAAPHVISGVDEHLLMGAGSAIYARGKVDQVASAYSIFRKGQVYKDPETDEILGLEATDIGLGRVTKTEGDIMTLMLEKTNQQVAVGDRLLETEDRSLASSFIPKAPAQEVIGTILAVSGGVSQVGQYDVVVLNRGKRDGLEQGSVLLIEKAGVMVYDREAKEKVRLPREEAGSMMVFRVFDKMSYALIMRAVRPLRVGDMFNSPKQ
>NC_020888.1|WP_015485324.1|141074_141692_+|DoxX-family-protein
MSFLVEQYRHIQAVGQRLQYLDGLPPLLLRLYLAPIMMQAGWNKLSHFSDTAAWFGNPDWGLGLPFPELMAALATGTELIGGALLVVGLATRWVSIPLLFTMLVAAFSVHWENGWLAIADGSSWLANDRVLEAGERLSRAKDILQEYGNYDWLTGRGSVVILNNGIEFAATYALMLLVLITNGGGRYTSIDYWIARFAGVLPAKR
>NC_020888.1|WP_158505899.1|141718_142624_-|lipid-A-biosynthesis-acyltransferase
MKNIIGYLMIAVIKLLGRVSLPTAQKIGHRVGIYLWGRRTRAREVARVNLGLVYPNKSAEERDLLVQETLIQNGMIGAEMGPMWGYETAKGLALVRTVYGEELVEAGIKDKRGLLILAPHLGNWEILNNYISSKCPVTIMYRPAKSPVFNEWMVERRETVGCKLVPTTRDGVAALFSVLEQGGTVGFLPDQEPRLKSGVFAPFMGVETLTPKLPYEMIQKTGAQVIYAFAKRLPNAEGFDLYFTAAEDGIYSDDARTCATSMNQSIEELIKIAPAQYQWTYKRFKRRPEGQKNPYSEAKVP
>NC_020888.1|WP_015485326.1|142759_144406_+|response-regulator
MLNLENSLSTKRILIVDDLVQARSSLKNMMGIIGAQRIDTATDGREAMELILENDYDLVLSDYNLGKGKDGQQILEEARFSNRLKATAQFILVTGENAVERVMGALEYEPDAYITKPFTLSMLRERLKRIFHTKEELRPINEAIDNGDINQAIEIANFLLESKPRLLLPVSRILGKLYMREERYNEAIKVYSQPLNTRMVSWARLGQAICLHHLGDSRSALALIKQTLVDYPMYVQCHDWAARILLALGQPAEAQEQLELAAAISPRAVLRQMELGYLASQNGDHKIAEAAFEQSIRLGRHSCYKTSGNYLQFARELQHGLSAEKTRDNINLRNKALRAIDELRQEYSGHVSIMFDTSIVESKTYVAVAESDKAKGAADRAESLLARIQAPTPDQQLQMTEAFIDVGEHIKAKDLINTMRDSQASNLAQNALDKLRALEDKLNAMTIREHTAKLNAEGVSLYEQGKLVEAIAVFDQAVKYDEVGVSVLLNAIQAKVSHIERSELDIRQLKDCYALFKRIGTVGHLDERYDRYDRLKTTCIRLKRAAGV
>NC_020888.1|WP_015485327.1|144425_145085_+|HAMP-domain-containing-histidine-kinase
MKFEQLAAAVIHDVKNQLQSLMDEEQLALEQLPAQYRSIIEPILQRTNRLKNDALQLVILFRLGQNRPFPMDDAWLRDSANDAIEASLIQFPSVRLINEIDEDCQGFYNENLIHLALMTLITNSVQAGATTVTLKGEEIDQASGGVRIQVIDNGPGFSKSMLDSQGESADEVSSHTDGTGLGLYFVKLIVDHHKAPALGTSVVLSNNAKKGACVTLNLP
>NC_020888.1|WP_144055314.1|145096_145657_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MIVSKISHHQLRIIGGEWRSRRLRFPAIDGLRPTMDRVRETVFNWLQHDVEGCRVLDAFAGSGALGFEALSRGAKEVIFLEKHPAAAVQLKENLQTLGASNAQVWAGDALLWLTQNPEPFDLVFLDPPFGKNLLQPALDSLQLLPGALIYVEHEATLKPQFPDKWQELKCKNTKEFYFRLFEVEEP
>NC_020888.1|WP_015485329.1|145647_146412_-|hypothetical-protein
MLQGFSKTTLNVIVLGCLALIAWINLAHQNPEDTPLDALNQAPLSERPWHAWQSLEGTWLYWQNIRSENVVVKVRMEGESFSAPVDIDSELPLDQWAQLLIEQLKDAPTNRAGILFIQGPLDERSLQTAAAYAIRTLALRPLTQHQPNACLELYPAGARWFSAAQQQSWALASAATNALPDRSQWQAFRIQQSSELRDLWFSDAGQVDIQADLAYHSLPNNFFSLLYRDLGESQKTAASDYQDCMAKIVTPESL
>NC_020888.1|WP_015485330.1|146547_147816_+|signal-recognition-particle-docking-protein-FtsY
MFDFFKRKKDKNKSEKPESAELDSALEQTLEPISSQPVISEIEPQPVDVITEPEKAMIKPPVVEEMVVEPTPVEIPPVVAPNELDITPSSAVAEINPDVMVDVPVKAVAEEKKGFFGRIRSGLSKTRSGFTDGLASLLLGKKEIDDDLMDDLETQLIMADVGVEATTEIIKRLTARVSRKELKDSDALYEALIDELQDMLAVSQKPLVIDSSKKPYVILMVGINGVGKTTTIGKLAKQFQKRGKSVMLAAGDTFRAAAVEQLQVWGERNNVPVVAQHTGADSASVLFDALQAAQARKVDVLIADTAGRLHNKDNLMQELEKVVRVMQKLDPSAPHEVMLVLDAGTGQNAINQTKHFLQSVGVTGLTLTKLDGTAKGGIIFALAKQFGLPVRYIGVGEGIDDLRPFNADEFTRALFRHDTKED
>NC_020888.1|WP_081601171.1|147840_148551_+|cell-division-ATP-binding-protein-FtsE
MVRFERVSKRYGAGKDALSNINFELARGEFAFLTGHSGAGKSTLLKLMMLMERPTRGKIIVDDQDLTTMRPGQIPYHRRKVGVVFQNHQLLFDRTVFENVALPLQIAGYTPAEAARRVRAALDSVGLLGMEGRNPIELSGGEQQRVGIARAVVNKPALLLADEPTGNLDPELSEEIMNLFLRFQQVGVTVLIATHDIALIERMGHRRLILDHGELHCSELQARKSDSSDLLGDDHG
>NC_020888.1|WP_051052443.1|148651_149587_+|ABC-transporter-permease
MQNMGFRDQISSYAAHHQLVAVETLMRLWANPMSSVLTWLVIAIALTLPGALWISLDNLSQLSGRFQASGSITVYLVPGTAIKDGQTTQKTIAGLSHVVDTRFIDADTALEEFRTTSGLKDALDLLPSNPLPPVIVVEPQLGTPQAQVLALGKSIERLPFVDVVELDTAWLERLLALLALSERIIWVMGALLALAIVLVVGNTIRLSIAARVDEIRVVKLVGGTNAWVRRPFLYTGLWFGMVGGLMAWVLLAICWLLVSGPVEDLAQLYGSTFSLAPLSASAALFLLFSAMFLGWLGAWWSVHRHLDQIEP
>NC_020888.1|WP_015485334.1|149712_150582_+|RNA-polymerase-sigma-factor-RpoH
MNKGLQAAYALSPGANLESYIANVNAIPVLTPEQEKSLAERLHYHEDLDAARQLVMAHMRFVVHIARSYSGYGLNQSDLIQEGNVGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEFILRNWRIVKIATTKAQRKLFFNLRSQKKRLGWLTQAEAKSIADDLGVEMKTVFEMEGRLNSYDAAFDAGADDDDETAYKAPAYFLEDHSADPALQVEADNSEQDSSDRLHLALASLDERSRAILQHRWLAEEKSTLHDLAAIYEVSAERIRQLEKNAMKKLKDAMSTELVPV

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Crispr_ID: NC_020888_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020888_2

439471-439691

Orphan

Consensus_repeat	Method
GGCGCGGTGACCGGTGATTATTATGTCGGCGGCTTGGCTGGCTATCTATCGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020888_2

>merge|NC_020888|2|439471-439691|CRISPRCasFinder
GGCGCGGTGACCGGTGATTATTATGTCGGCGGCTTGGCTGGCTATCTATCGAGTAGTCGCGCCCTTAATAACAGTTTCGCGACGGGCGCGGTGACCGGTGATTATTATGTCGGCGGCTTAGCTGGCTATCTATCGAGCAGTAGCGCCATTAACAACAGTTTTGCCAGCGGTGCGGTGACGGGTAATTCTTCTGTCGGCGGTCTGGTTGGCTATAGTTTTAG

>NC_020888|2|2|439471-439691|CRISPRCasFinder
GGCGCGGTGACCGGTGATTATTATGTCGGCGGCTTGGCTGGCTATCTATCGAG	TAGTCGCGCCCTTAATAACAGTTTCGCGACGGGCGCGGTGACCGGTGATTATTATGTCGGCGGCTTAGCTGGCTATCTATCGAGCAGTAGCGCCATTAACAACAGTTTTGCCAGC
GGTGCGGTGACGGGTAATTCTTCTGTCGGCGGTCTGGTTGGCTATAGTTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020888.1\|WP_015485575.1\|425902_427954_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NC_020888.1\|WP_015485579.1\|453992_456098_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|224509
NC_020888.1\|WP_015485576.1\|428051_438827_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|273865
NC_020888.1\|WP_015485584.1\|459399_459996_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273610
NC_020888.1\|WP_015485567.1\|418429_419773_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015485574.1\|424620_425493_+\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	unknown	unknown	gnl\|CDD\|223704
NC_020888.1\|WP_015485581.1\|457893_458205_+\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015485580.1\|456185_457775_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_020888.1\|WP_015485578.1\|446615_453719_+\|autotransporter-subunit-C	unknown	unknown	unknown
NC_020888.1\|WP_015485569.1\|420105_420690_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015485586.1\|461230_461989_+\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NC_020888.1\|WP_041588365.1\|423640_424369_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_020888.1\|WP_015485570.1\|420701_422588_-\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|274542
NC_020888.1\|WP_015485571.1\|422739_423228_-\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|377536
NC_020888.1\|WP_015485583.1\|458786_459179_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_020888.1\|WP_015485582.1\|458350_458782_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NC_020888.1\|WP_015485587.1\|462084_462711_+\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NC_020888.1\|WP_015485566.1\|417332_418427_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_144055406.1\|460019_461228_+\|cytochrome-b-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|177203
NC_020888.1\|WP_015485568.1\|419808_420102_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269823

Protein	Function_ID	Function_description	E-value
NC_020888.1\|WP_015485575.1\|425902_427954_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.10078e-57
NC_020888.1\|WP_015485579.1\|453992_456098_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	4.74585e-21
NC_020888.1\|WP_015485576.1\|428051_438827_+\|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl\|CDD\|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	5.39996e-12
NC_020888.1\|WP_015485584.1\|459399_459996_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	1.47195e-78
NC_020888.1\|WP_015485571.1\|422739_423228_-\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|377536	pfam05638, T6SS_HCP, Type VI secretion system effector, Hcp. HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube.	3.71963e-42
NC_020888.1\|WP_015485574.1\|424620_425493_+\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.55299e-68
NC_020888.1\|WP_015485583.1\|458786_459179_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.65481e-82
NC_020888.1\|WP_015485582.1\|458350_458782_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	1.03386e-103
NC_020888.1\|WP_015485580.1\|456185_457775_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_020888.1\|WP_015485586.1\|461230_461989_+\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	5.44551e-68
NC_020888.1\|WP_041588365.1\|423640_424369_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.44727e-13
NC_020888.1\|WP_015485570.1\|420701_422588_-\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	2.48689e-161
NC_020888.1\|WP_015485587.1\|462084_462711_+\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	2.59301e-118
NC_020888.1\|WP_144055406.1\|460019_461228_+\|cytochrome-b-N-terminal-domain-containing-protein	gnl\|CDD\|177203	MTH00145, CYTB, cytochrome b; Provisional.	1.59572e-124
NC_020888.1\|WP_015485568.1\|419808_420102_-\|PAAR-domain-containing-protein	gnl\|CDD\|269823	cd14738, PAAR_2, proline-alanine-alanine-arginine (PAAR) domain. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	1.35329e-39

>NC_020888.1|WP_015485576.1|428051_438827_+|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MTKNTNTSKNVTTAATGFLPKLKQLAEAIRNANLIAAGIRGSLLGSLIAGQIVMPVAVLALPTLPEVKGGSADFIGDPNTGINKVNQTSSRVVIDWSTFDIGSTETLTFDQINTTDVAINNVLDTKLSTIYGSVFAKGNIILINPNGLVFSDGAIINVGGLVASTLSLDTSYDLTYFVNDTENTVGLVFKDSGSTSELTSNAVITASGLNATSSVVFLGGQVTNNGDINARLVNMVGADGATITFGSDVLGIERIVDASVAPSVENSGTITASQITLEAYAAADILASAVNSGTLQATGISTIGGEIRLIASSGDADVAASVTNSGSLSATSGASIVIEADKVTLASGTAISATGTAATDTTSEVPAGSITVNTGTLDVSEAGAKYNNFDLIDGGDSVSIEKKLNINIGDSSSSIKVDGVSVVTSNNAILNGSDTVSEAFEIAADGVTVDVNSMSLSSVAAIDAGASASDSVTFVAETDASLVAENKITDPGVEELVAIDNSLSTTHIDFSNINSADLKGGVLTGSDGADTFVVNTGGLKANEIAVTGLEKNADGIATVNASGNTDGKDKLTSTFDASLTSEENEVSLTNYLFRGIEETVLADGTLTGTNAAETFTVAESKAVGVNAIDFKGVTTVVAGTDAGVVDIVNTGAAGAQLNGANNELVASGITFEEVEKADLANGTLVGKDDVNEAFSIDSDGITVGVNSMILTSVSAIDAGTSSGDSVTFGVATSASLVAENKITDPGVEELVAIDNSLSTTHIDFSNINSADLKGGVLTGSDGADTFVVNTGGLKANEIAVTGLAVNTDGFATIDAGGNASGADKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLVTVDNATQLKANDIVFEDINTTIDAGTNGTGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSVDTFVLATVDNATQLKANDIVFEDLNTTIDAGTNGTGSDKLTSDFDATLAGASKALTSSGFTFQNIETADLNTKTLTGSGSADTFVLATVDNATQLKANDIVFEDLNTTIDAGDNATGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLVTVDNATQLKANDIVFEDINTTIDAGTNGTGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLATVDNATQLKANDIVFEDINTTIDAGTNGTGSDKLTSDFDATLAGASKALISEGFTFQNIETADLNTKALTGSDSADTFVLVTVDNATQLKANDIVFEDINTTIDAGTNGTGSDKLTSDFDATLAGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLATVDNATQLKANDIVFNNINSTIDAGTNGTGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLVTVDNATQLKANDIVFEDINTTIDAGTNGTGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSVDTFVLATVDNATQLKANDIVFEDLNTTIDAGTNGTGSDKLTSDFDATLAGASKALTSSGFTFQNIETADLNTKTLTGSGSADTFVLATVDNATQLKANDIVFEDLNTTIDAGDNATGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLATVDNATQLKANDIVFNNINSTIDAGDNASGSDKLTSDFDATLAGASKALISEGFTFHSIETADLNTKALTGTDAGETFTFTDANTFNVNDIVFTDVATVVAGGADSVVDTVKTAGNKAELTGASNELKVSGITFQSIDVADLAGADESGEVNNGSFSGSSKADTFVLATVGSNTQLKANGIVINNSNTTIDAGANGSGSDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSGSADTFVLATVDNATQLKANDIVFNNINSTIDAGDNGTGSDKLTSDFDATLAGASKALISNGFTFQNIETADLNTKALTGSDSADTFVLAAVDNATQLKANDIVFEDINTTIDAGDNGTGSDKLTSDFDATLAGASKALISNGFTFQNIETADLNTKALTGSDSADTFVLATVDNATQLKANDIVFEDLNSTIDAGDNGTGSDKLTSDFDATLTDTNNALISNGFTFQNIETADLNTNSLKGSGRADTFVLSTVDNATQLKANDIVFEDLNSTIDAGDNVTVLDKLTSDFDATLTGASKALTSSGFTFQNIETADLNTKALTGSDSADTFVLATVDNDTQLKANDIVFNNINSTIDAGANGAGSDKLTSDFDATLAGAAKALISNGITFQNIETADLNTKTLTGSDSADTFVLATVDNATQLKANDIVFEDINTTINASGNTGGNDKLTSDFDASLTSENNEVSSSDYLFQGIEETVLADGTLTGTAAAETFTVAGSKAVGVNAIDFTGVTTVVAGTATTATDVTDTVDTDGTDAALDVANNQLVASDITFKEIEKADFAGDNANGTLTGSANSDSFVVNADGLKANEIVVTGLKTNADGIATINALGNAAGVDKLTSTFDASLTSENNEVSSSGYLFQGIEETVLADGTLTGTAAAETFTVAGSKAVGVNGIDFKGVTTVVAGTATDVTDTVDTDGTAAALNGNNNELVVSDITFKEIESADLASTTIKGTLTGTEEAEDFVVGSSVNELVVNAINFTGVDTVVAGTKSGVIDTLDTQGNSATLSGIDNEVIASSITFQQIESVDLASDTVKGTLNGTDVSDEFEINGANALTSDNVKFTGVGSVAAGSSNDDSITSTLAVDASLSAANKALMVAGINFTAIDSANLSQGIVTGTDSSETFEISNTNNAVTVNGMSLTAVSAVNAGSSMDDVVKVATGVQATADLTAVDNQISASAITFNDVDTVNLGGGTLNGSNSENEVYVVNTTANALAVKNMQFESVNAVNGGVDSIDSIATLGVAVDAQLTGADKQLLVSDITFSDISSANMSGGRLSGSDEADTIQLTSAGMAANEINFYLINSAVDTQGGDDTVIGRAGVDWTLTGTNGEINSVRYQFKNVENVDVVSEGVAGSAIAETFELGTEESQVIVNQLTLSNVSTVTADLNDTLLGTSGDDVFNVNSDTSVLTNSTTFDGMENLNGGEGQDTLISNVDGLAWIINQASDGVNSLGDFLFSQFEVLNNNVGNLNLSTSLQAVFAGESVSFIGGNSSTASIQAVPSDMNLNFNGQEDVIINSTYVGKNAITGNLIAHLADINASGDIDLDTEIDILNVSTNDNRSINATFVQNGDLVLRTVDVGDSGTVILDSAVEGTGLLTTETRNEVNFVAKSVSIGTGKSDRQGAGLWEGVGSAADASQLTFDVSFNLDLEALYYVTPFFPNGAPITSQLEGIESDSLISSQQSALIVTDTVQNLAQLDPAIFESLTPYIADANSIAGADNYYASSEVPSTLDTAQLAALLSSYEPTAAGGVNYDEYKLDGESEEDDDKKKLAKKLSKAGTFVADDNSDIKVAYSESGEMLGVVKDYVFQAGDSLWSLSKRYLGNGFAWTEIAKQNPSIKNPSSIADGQIIKVVVKVSDEIGQILKSAISAGGISKEGNSATLPASLRREVALP
>NC_020888.1|WP_015485575.1|425902_427954_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MLKGEASLTLITSLNRMKQSLAVAISTIMLTAGALTVQAEGAAVAPPQADLNALRSIFGIDAPNSAGDVSDAYAERQKKDDLAPKLNGEIPDAAKRDAGPRIIVNQFVFDDLREYPEIGITKKSVEQEAERLRADYMKEEKRIAGGFTIDESAEVIEYLSEIGRQGDADNLTYEDMQNLVEIVRQQNRNRGLSYADLEEVTNKLTLFYRQKGLFLTRVQLPAQNIKDGIVRLSILEGRLGQVEAINNKKYTLKTLSSPFEPVMDKAVSGTRIEESLYVLNDLPGLNITGAFTAGENPGETKLKLNVRDEEALRFLVRLDNHGSAFTGDTRLFTSMEWYNPIGFGDSLKVGYLRSEDIEGKNVADNESRANLGQFSYSFPFFSLRTRVTLSADYNSYSIVDEDGGVINALELEGTSSNYALNIDHKIKRSRDFNMSTGFTLTDKETKIDSEFIPAGDHAVGGEFNFYIDGLNRSGLRMLNVANLTLQYGEHKNEVAEGRDDTFTKFGIDTNSLFFVPLPFSEQYSRLITTVKMQYSSASLPSFEQFSLGGANGVRAFNVGKFSADTSAYIANEWYFDLPRWSFIGNRTFGEVFQAGLLLDFAYGVQNGGFTTDSGSLADDEWARMSAAGIVIKAVWGNTFSSKITIATPIEGKSSLDPEGDSSVEKLNEKPDTVEVFADINFVF
>NC_020888.1|WP_015485574.1|424620_425493_+|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase
MSNTAGVRLAVNGKTDIGRVREENEDAIRWHADATLPFGYVVIADGMGGYSGGSLASRIAVETFSQVLDGLITPIFLACTPDQQNLMIHSAINNTVGKANQSIIDAKLENPQFAHMGTTLVLAVVWQDQLVVAHVGDSRAYMWSTAGIVQITKDHSVVQDMIDAGALTEEQARVSNVRNHITRALGVTEDVEPTIQSLTLNKSSLLLLCSDGLSEYFDNSELEHVLATHRPALECCYRLIDEANQCGGKDNISVGILEFTANSTVSPVVTGSVPSGSGEDTTVRRDRPSH
>NC_020888.1|WP_041588365.1|423640_424369_-|transposase
MARLPRINIANIPQHVVQIGHNNLNCFFDDEDYDFYLTSLKKAADQYDVNIHAYVLLPNAVQIIATPNIPQGISSMMQSLGRRYVQYINHRYQRSGTLWAGRYKSSVIDSDAYLLTCYRYVELKPMYEGLVDSPELYAWSSFNYHTGREPSDLIADHRLFMNLGDTHEDRADEYSAMFRFRFDRMLLDYIAETIKLGQVLGGDRFTEKIEQIANHRVRPLKRGRPKKKDKDEQSSSSGTTTA
>NC_020888.1|WP_015485571.1|422739_423228_-|type-VI-secretion-system-tube-protein-Hcp
MAIYMNFNEKSPAGNVTAAGYEDWIEVDSMSFGVGRSISMQAGAMANREASRPSISEVTITKPLDAASGGLFKASVTGDSGVKVEIHVVQTGAEKVEKYAVYKLEDVIMSSYSVSASAGGAPQESISLSFAKIEADLTHADKTNKNTKNMKVGYDLTTAKPL
>NC_020888.1|WP_015485570.1|420701_422588_-|type-VI-secretion-system-tip-protein-VgrG
MSVLSQNKRLIQVDTPVGKDAFTVSELIGDEYISDLFRYTLELFSDNHNINQKDIVGKDITVSILADGETTTRYINGYVNHLAMLDVNDEGLRRYRLEMVPGLWFTTLGSKNRIFHKKNVKDIVSEVLGEYSKVVTHQFKPTGSYLVREYCVQFDETDFDFISRLLAEEGISYYFTHDDGKHELVLADDMQDYFDAASEKIEYDGGGTQPTKHTIHSWQRSFNYHTGGFEFKDYSEFTTTKDNKQVVKTKSPLNSVSDFTTSGYGIYNYEIDGENKHKFIDAQNKSASEKAMEAHEAGFDVAQGTSDVVTLAAGGRFEIDHSITSESGKYLLTQVHIVARDGNNQDTHFANRFVCVPNGVIVRPKHNNFAKKIHTPQIATVAEVKATGSDSSSDVLTQVKVTFPWNTAQNSCWVRVVQQFAGKGWGANFVPRVGQEVVISYINGDPDRPLVTGAVYNGTNDGPNYTATQSGWKTAIKDSKFNELRFDDKKGDEEIYMEAGKDHNWVVHNDQTGLVENDQTLTITENRTATISNGNDTLTVSKGDQTTKIDAGNHTLKIAKGTSTIDAMGAIKITSKTSIELKVGANTIKIDQSGIEIKGTMVKAKASAMGEVSAGGILTVKGALTKIN
>NC_020888.1|WP_015485569.1|420105_420690_-|hypothetical-protein
MSDLIKIQALTADELLKEFELTEPEAEAVVIPDTAPQISIERLIAAGFYADAIKLLAHGLPKRESVWWACLAARKAQTADTSEDNINALLATEAWAKKPTEENRLRCKALGEKTQYKTAASWAAIAANWCTGSMTPPGEPEVQPPPFLYAHAVAGCITLAAATIDPEAIDDYYKHFLAQGINLARGGNGLIEEA
>NC_020888.1|WP_015485568.1|419808_420102_-|PAAR-domain-containing-protein
MGKPASRITDMHVCPMSSGPVPHVGGPIVSPGAPTVLIGNLPAATAGSMCVCVGPPDTVAMGSTTVLLSNKPAARMGDSTAHGGKIVLGCPTVLIGG
>NC_020888.1|WP_015485567.1|418429_419773_-|hypothetical-protein
MNNALKTNAPTIQHSLKGYRAFQPEGYRGAGRSIYVKETTLNKLLALQTMSKTPSSEAYYALELLRSIDSLRSQVVPINSFMQSAKNSPRCIVTSSFEIEYHTNPSYVDHYQTDVFITDVRIKAADQKKYERAALWHTLQNDRERWQINEEPTLTLSGSSKGKDKYEPIQVGINGYCGGEIQDAASILPSHIARGDQRITAQLQNNGYELFYVPHDSSAVKAGWTFVKSLANPMSDKRNQESARILSGYMHDAHQQGLYVEWTSHRGGSLILTEAMNLLAQRNINLQNKQWIYLSDHTSSQHAADKARRAVGMDTKDSNWHHTNKSMGVAQWAGGKSFGTSGLACSIESIAHNPTNLNNWYDATIGGAQQFAANHKLLLGSAGIIGAAATMGMTPALISMISSAGWLGAAGAVGTAGAAALGNIPKLNQNYGANPVKELIKKLPGQN
>NC_020888.1|WP_015485566.1|417332_418427_-|hypothetical-protein
MFQLRSRKNPKGPSMSQARHIKKDLGIARLAFMAPAPSPRFDKLTNWEGQPDSLDALDLTIYTHKLGSNGHFPDNIQKYRVYNNEWQFKGLPIIQRACGEINLVVDVIRIDDLPINENLFNKRDLALTCLENIKYAHAEVHTEPPKNDVFNLNPQKWPTYLGPINSQWIKKINTDWLYYEFQSLTHHSSTVAWITPLTDQHFILFNFSVSRSCPNNNNAYRIEEHVPRKNFLDYIHKFMDTVEIELQPEFEQKREQQKKLEDEAKPVIEATSEHIALAKTVMHEWSDCQYKDPSKDKGEDRRAPFKDVSDRIDWIVTPKPTPGSYPRGELIYNHAIMEKLKQDSAQASMMQTALESSTNDKPLA
>NC_020888.1|WP_015485578.1|446615_453719_+|autotransporter-subunit-C
MAITPLRLLMPMILGCLIVPSAFAESGRADYDLDDDGLIEINSLADLNEIRNNLDGTSLYGDSTGCPMDGCIGFELTTTLDFDTNADGVMDANDAYWNEGAGWMPISSSSTPFTTTFDGNGHQIRNLYINRSNTDYIGLFAAISGESAQLRNIGLTGELMQVLGDYYVGGLVGYAGSSATISQSYVSGIITGDRYVGGLAGTLDTNSTIRNSFATGTVSGNVRIGGLAGYLNGSSIVNSFAAGYVRGVGYYGGIGGAVFFGSFIENSYSIVAVNGTDIDSFSIKATTLVELQCPVGASNTSCIADKVLYAEWDNNVWDFGTSNQLPGLILEGITYRDSDGDGSLDSDDAFANNFAASLDRDNDGHPDIWTIGCDANCISNSGLTLDQFPSNPAVWQDEDLDGYPDSWIDSCGTSCQAASGLALDSYPNDTDNDGINNSEDTDDNNDGITDADADSDGLIDISSLEQLDAIRYNLVGTGRTLSEGEQTDSSGCPPVILDGVLQLHCSGYELTNNLDFDTNADDTMDERDAYWNDGEGWEPIGNSTSPFEAIFDGKGYQILNLYIKSGSDTGLFGAIEGVNANLRNIGLTGPLMNVEGYDNVGGLVGFALVGSSINECYSTGEITGRDNVGGLVGNLDYSAINNSFATGNVTANGYVGSLLGSLHDSSVNNSFATGRVYAKSISGIGGLIGYFPFDNDILNSHWATDTTGQLNSAGESEFDNYFGATLAELQCPTARDNADDCVISNTLYAGWDSSVWDFGSNTELPGLILDGVVYRDSDGDGSLDGDDAFPNIWAATIDADRDGYPDAWNINCDTECLETSGLTLDQFPTTSAAWEDKDIDGDPDSWAPDCDISCQNDSGLTLDIFPNDIDNDGINNTDDNDDNNDGIMDADADSDGLIDISSLEQFNAIRYNLAGTGRTLIEGEETDSSGCPAVILAGVLQHHCWGYELINTLDFDTNTDGVIDENDAYWNEGDGWEPIGTSSSLSFQAIFDGNGYQIRNLYINRSSTNYVGLFGYISGESAQLRNIGLTGEMMRVVGNDYVGGLVGYAKNAARIEQSYVTGVVIGDDYVGGLLGSLSIYGVISESFATGKVSGSTYVGGLVGHLSRSELTNSFASGSVEGNGGVGGLVAYFDYFSTLENSFAVGHVAGVSYGIGGLLGYSNSTTINSHWATDTTGQLNSERESELDNYFGSTLAELQCPTSSDNKDDCVISNTLYAGWDSSIWNFGTSTQLPGLIINGIIYRDGDGDGLLDEDDAFPYNHAASSDDDSDGYADVWTIGCDDNCISSSGLTLDQFPSDSAAWQDEDLDGYPDSWTDGCDANCQATSGLTLDSYPNDTDNDGINNSDDTDDNDDGITDADADSNGLIDISSLEQLNAIRYNLAGTGRTSIEGAETDSSGCPAVILDGVLQLHCSGYELTNILDFDTNADGVMDENDVYWNDGEGWVPVGDYDLPYTAVFDGNGYQIRNLYINRPSTNGVGLFGYVSEKTAELRNIGLTGELMRAIGGNNTAGLVGVAYRGATISRSYTTGDVAGGENVGGLAGNLSQNNTTINSFASGTVSGSSYVGGLAGRISSSTNLTNSFATGRVNAASRSSGGLVGEIANKSAISNSFATGSVTSSESLVGGLVGYMYGDSTITDSHWSTDTTGQPNSALESEFDNYFGATLAELQCPTSSDNTDDCVISNTLYAGWDSSIWDFGTSTQLPGLIINGILYRDSDGDSLLDEDDAFPNKYAASSDADGDGYADTWTIGCDANCINNSGLTLDQFLGNSAAWQDEDLDGYPDSWAEGCDSSCQNSSGLALDDFLNDTDNDGISNSDDTDDNNDGIMDADADSDGLIEVSTLEQLNAIRYNLAGTGRTSSEGEEIDSSGCPAVILAGVLQLQCSGYELTNNLDFDTNADGRMSANDTYWNGEEGWLPIGTSSLFPFKAIFDGNGYQVRNLYINRSRTDYVGLFGYISGKSAELRNIELTGELTRVVGDDYVGGLVGHANNVETISQSYVTGAVTGDRYVGGSVGRLSANSAITNSFFTGVVSGSDYVGGLVGYLSERSSISSSFAISEVIGDEDVGGLVGGGEGQVSISDSFATGAVSALYSVGALLGSIEGESVITRSFASGFVTATDSYGGGLVGNGDTDTVITNSHWATDTTRQPNSALESEFDNYFGATLAELQCPTSSDNKDDCAISNTLYAGWDSSVWDFGTFEQLPGLRIDGVVYRDIDGNGSLDSNLPPSVHLVLLQNGEQVSDITLGAGDVTLEAIVADADVNDTHTLTWALGSITVMSESATSVSFSSDELVLGNYTVSVKVADSGDPSLSDKAEITFTVYSAYVPEPAPENTSSGKKGGGGALGLIWLMLCGGLVYTRQRRVVFAG
>NC_020888.1|WP_015485579.1|453992_456098_+|TRAP-transporter-large-permease-subunit
MDQVASLKEPSAYRWLSTMPAFLILVLVVLLDTSNAIQGQLLLLGEHTWKGYYQLRLDPVAPACDPSQDIEVALQRTLQKQEANAGDEMDLFAMEPIAPEVLRESLIASQKECRFRVDRYHEILERKTSSVAMYIAVEQWVADLGEFRMRASGIMLAVLLLICGGTALFRKHHISLRPALTVLDFRVSALAQMAAFGILFYSMGSFKGVALSAGVNVVPEHLALLWIWIIGFGSAIAICLYQVIKVPADAERGGHIGNAILATPLYAIFTIISGSYFLFQGHASGIGIYINQMMELAPLMLNVALYVLIGMLLKRTDMAQKVFDVFRPFNLRPEMLAVVAVAVSAIPTAYTGGSGIFVIAVGSLVYMEVRRAGARRQLALAATAMSGSLGVVLRPCLLVVIVAALNNEVTTDQLFSWGVKVFLLTTALFAFYAFISSKKVSTSGDETLSTRNHGTKVFPQFLQALKPLIPYVLLISGTLIIYALVLAAYLDEFSAPTILPVLLIVILAYERFANQEVRQQGSTPDVEEKPSLFATLQSSTSEATVHIGALLMLMGTTMTIGGVVERAELMAYLPVEFSSVWMAMLMLVAILVVIGMVMDPYGAVLLVSVTIAGIAYKAGIDPIHFWMVTLVAFELGYLSPPVALNHLLTRQVVGEEEIRLAKLETIGDNFWYRNEKILLPLVTMATALIIVAFGPLLWAEM
>NC_020888.1|WP_015485580.1|456185_457775_+|peptide-chain-release-factor-3
MSDTPFYQEVASRRTFGIISHPDAGKTTITEKLLLFGNAIQLAGTVKGRKTGRMATSDWMKMEQDRGISITTSVMQFPYKDRMVNLLDTPGHEDFSEDTYRTLTAVDSVLMVIDGAKGVEDRTIKLMDVCRLRDTPIFTFINKMDREVRDHIEVMDEIETVLKIKCAPVTWPIGMGKAFKGVYNLLTDTVHVFQPGKGSVVPDDVRIEGLHSPESVAYLTQGLIDELQDEIELVQGASHEFDLEEYLAGNLTPVFFGTALANFGIREMLDYFVEWAPMPIPRETNERAIVPTETDFTGFIFKIQANMDPKHRDRIAFMRICSGTYTKGMKMRHVRIGKDIKIADAVTFLAGDRSAVEEAVSGDIIGLHNHGTIQIGDTFTSSGDLQFTGIPHFAPELFKRVRLKDPLKMKQLQKGLQQLSEEGATQLFMPVNNNDLILGAVGVLQFDVVQQRLRDEYKVECIYEPISVNTARWVYCKDHKMLEDFKRKAGDNLAIDGGGHLTYVAPTRVNLSLTEERWPDIEFRSTREH
>NC_020888.1|WP_015485581.1|457893_458205_+|hypothetical-protein
MTLFFVAGSALTLLLCAAACWLLQHRVNKQTVSAHDAKGYLLIACIIVGFGVSAGCFAVGQQLGYQQQENTSEAMGLALLLDVMVALLALIVGLVVIKEPEQY
>NC_020888.1|WP_015485582.1|458350_458782_+|50S-ribosomal-protein-L13
MKTYSAKPESVKREWFVVDAAEQTLGRLATEVARHLRGKHKPEFTPHVDTGDYIVVINADKVKVTGNKSSDKMYYRHTGYPGGLKSISFEKLIDHKPEMVIETAVKGMLPKNPLGRAMFKKMKVYAGSEHPHTAQQPQELKLG
>NC_020888.1|WP_015485583.1|458786_459179_+|30S-ribosomal-protein-S9
MAVSQYYGTGRRKTSTARVFLRPGTGSIVVNKKSLDVYFGRETARMVVRQPLELTENLGKFDVIVNVQGGGGSGQAGAIRHGITRALMQYDETLRPSLRAAGYVTRDAREVERKKVGLRKARKKPQFSKR
>NC_020888.1|WP_015485584.1|459399_459996_+|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MSQDGVNKTRRTLLVGATGAVGAVGAGFLAVPFVKSWLPSEKAKAAGAPAKVDVSKIEPGAMLTAEWRGKPVYIVRRTPETLDTLGTLAGRLKDPENSNKEQQPAYADNGFRSRKPELLVLLGVCTHLGCAPKYFAEVKPEPFDSDWKGGWYCPCHGSRFDLAGRVFNGSPAATNLVVPPYSYESDNVLVIGVDEENA
>NC_020888.1|WP_144055406.1|460019_461228_+|cytochrome-b-N-terminal-domain-containing-protein
MGWIDDRLPVTQTYEKHMSKYYAPKNFNFWYFFGVLSMMMLANQILTGVWLTMNFVPSAEGAFASVEYIMRDVEWGWLIRYLHSTGATFFFIAVYLHMMRAVLYGSYQKPRELIWIFGMLIYLALMAEAFMGYVLPWGQMSYWGAQVIISLFSVIPFGIGDALTEWIRGDFLISGATLNRFFALHVVALPLVIVGLVVVHLLALHEVGSNNPDGVDIKKLKDENGKPLDGIPFHPYYTVHDLVGIVVFLMIFCTVLFFFPEGNGFALEYANFEPANGLKTPAHIAPVWYFGSFYAILRAVPDKLLGVIAMGAAIAILFVLPWLDRSPVKSWRYKGWVSKIFIVVFGFNFVLLTWLGTQPATATLTSIAQVASVIYFSFFIGMPFYTRMEKTKPVPERVTGGH
>NC_020888.1|WP_015485586.1|461230_461989_+|cytochrome-c1
MKKIFALIAAVIPAFALASGGDVHLDKHLTDLTDTASLQRGAQTFANYCMGCHATSHARYNRVARDLEIPEKLMMENLVADTDKRFGDLMTIAMTTEDAKQWFGAPPPDLTLVARVRRPDWLYTYLRSFYVDSSRPWGVNNVVFKDVGMPHVLAGLQGVQMRGTAQVAVDFDTLTGQEITEEHHDVLYLAEEGTLSASEYDKLVFDLVNFLTYMAEPIAVERERLGWWVLLFLAIFFVPVYMLNKEFWRDVK
>NC_020888.1|WP_015485587.1|462084_462711_+|stringent-starvation-protein-A
MGVVAKRSSMTFYSDAADHYSHRVRIVLAEKGVAVEIHDIDPDNKPEDLASLNPYNSLPTLVDRELVLYEPNVMMEYLDERFPHPPLLPVYPVARAQSRLWINRIEKDWCGLIETIVSGKGKDVDKARKELSDSLMAITPIFAEMPYFMSEDFSIVDCCVAPILWRLPVFGIELPEKASKPLLQYMERLFERESFQASLSEAEREMRD

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Crispr_ID: NC_020888_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020888_3

2060414-2060500

Orphan

Consensus_repeat	Method
GTGTCTAAGAAACTAGGGGCGATTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020888_3

>merge|NC_020888|3|2060414-2060500|CRISPRCasFinder
GTGTCTAAGAAACTAGGGGCGATTCAGACTATGAAAAGAATTATTTTTTGAAGCAAATGGGTGTCTAGGAAACTAGGGGCGATTCAG

>NC_020888|3|3|2060414-2060500|CRISPRCasFinder
GTGTCTAAGAAACTAGGGGCGATTCAG	ACTATGAAAAGAATTATTTTTTGAAGCAAATGG
GTGTCTAGGAAACTAGGGGCGATTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020888.1\|WP_173391445.1\|2059225_2060376_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_020888.1\|WP_015487065.1\|2056365_2057670_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NC_020888.1\|WP_015487074.1\|2066222_2066600_+\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487062.1\|2049535_2051125_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_007103505.1\|2052300_2052990_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NC_020888.1\|WP_015487071.1\|2063653_2064490_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NC_020888.1\|WP_015487073.1\|2065277_2066198_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_020888.1\|WP_015487078.1\|2068671_2069157_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NC_020888.1\|WP_015487068.1\|2060640_2061165_+\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487066.1\|2057666_2058323_-\|response-regulator	unknown	unknown	gnl\|CDD\|182612
NC_020888.1\|WP_015487072.1\|2064504_2065281_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NC_020888.1\|WP_015487077.1\|2068201_2068672_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_020888.1\|WP_015487070.1\|2062233_2063622_+\|adenylate-cyclase	unknown	unknown	gnl\|CDD\|143636
NC_020888.1\|WP_015487064.1\|2054107_2055844_-\|copper-resistance-system-multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
NC_020888.1\|WP_015487076.1\|2067461_2068211_+\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_007103506.1\|2053130_2054111_-\|copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498
NC_020888.1\|WP_015487060.1\|2046760_2048158_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NC_020888.1\|WP_173391449.1\|2048380_2049531_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_020888.1\|WP_015487063.1\|2051680_2052256_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|376516
NC_020888.1\|WP_015487069.1\|2061476_2062058_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312

Protein	Function_ID	Function_description	E-value
NC_020888.1\|WP_173391445.1\|2059225_2060376_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.21244e-68
NC_020888.1\|WP_015487065.1\|2056365_2057670_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	6.64431e-51
NC_020888.1\|WP_007103505.1\|2052300_2052990_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	2.99467e-94
NC_020888.1\|WP_015487071.1\|2063653_2064490_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	7.14679e-160
NC_020888.1\|WP_015487073.1\|2065277_2066198_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.86409e-100
NC_020888.1\|WP_015487078.1\|2068671_2069157_-\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	1.60547e-94
NC_020888.1\|WP_015487066.1\|2057666_2058323_-\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	3.26251e-81
NC_020888.1\|WP_015487072.1\|2064504_2065281_-\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	1.54668e-150
NC_020888.1\|WP_015487077.1\|2068201_2068672_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.82733e-17
NC_020888.1\|WP_015487070.1\|2062233_2063622_+\|adenylate-cyclase	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	7.33875e-61
NC_020888.1\|WP_015487064.1\|2054107_2055844_-\|copper-resistance-system-multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NC_020888.1\|WP_007103506.1\|2053130_2054111_-\|copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	4.33735e-105
NC_020888.1\|WP_015487060.1\|2046760_2048158_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	4.49462e-13
NC_020888.1\|WP_173391449.1\|2048380_2049531_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.42975e-68
NC_020888.1\|WP_015487063.1\|2051680_2052256_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|376516	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561. This family includes cytochrome b561 and related proteins, in addition to the nickel-dependent hydrogenases b-type cytochrome subunit. Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a prokaryotic family. Members of the 'eukaryotic cytochrome b561' family can be found in pfam03188.	0.00159214
NC_020888.1\|WP_015487069.1\|2061476_2062058_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	7.72136e-47

>NC_020888.1|WP_173391445.1|2059225_2060376_-|IS3-family-transposase
MAGERYNEEFKIAAVKQVTEHGYSIADVAQRLGITTKSLYNWRDRYGENAQAYHEKQSSHEELRKLKAELKRVTEERDIFKGGRRVLCCRVKEKYTFIKSRTDRYSVRTLCRTLEVHPSGFYAWLANPESTRQKVDEYLLGFIKQFWLESGCVYGYRKIHKDLKHAGEHCGKNRVHRLMQQAQIQAERGYNRKTRYDSGELSTVAPNLLNREFDVSKPNTVWVTDITYIRTYEGWLFLAVIIDLFSRQVVGWSMSERINTDLVLNAITMACWRRKPKGEVIVHSDQGCQYTSYDWQSMLKANNLTVSMSRRGNCHDNACAESFFALLKRERIRRKIYRTREEGKADIFNYIELFYNSTRRHGNNNDLSPRDYEKNYFLKQMGV
>NC_020888.1|WP_015487066.1|2057666_2058323_-|response-regulator
MRIMLVEDDAPLGNAVKLALHDASYAVDWVQDGESALRAIELEEYALILLDLGLPKKDGLEVLRELRKDKNKLPVIIITARDAVEDRIRGLDYGADDYLVKPFSIDELHARIRAVIRRNHGVADPVLSNNIITLNPVNREVSRNDQTFQLTAKEYALLHALMLRLGAILSREKLEESIYGWNEEVASNAIEFIIHALRKKLGKDVIKNVRGMGWMVSK
>NC_020888.1|WP_015487065.1|2056365_2057670_-|two-component-sensor-histidine-kinase
MNRKLSLQRELNKWIILSSLVLVLLGGVIAGGIAFFQARELQDNTLTNIANLVRTGKLQQLILDHQDSEEEESIIIQELGKQTYFSNIPSTVKDGLQTLVLDDEEWRVFTTTQQQSQRRFVIAQQTELRDMIAWSSSLAVFLPIALLVGILLILIHVIIRAQFLSLGKLTKVMDKQDGMHLAKINELSSKDVPIEIAPFVFSINALLSRVGQAMQKQQRFIADAAHELRTPIAALALQSENLAHATTEQDREERQHVLQQSLLRLRNLVAQLLDLARLQSEENVSIQEISFNMVVQDVSADMFPIAEAADIDLGMLRQDENIIVGDKQGRLGQLVRNAIENAIHFTPHGGKVDISLYKQDGKAVLIVEDSGKGIPEAELEQVMQPFYRVMEGVQPGSGLGLAISHEIAQRLGGSIILANREHGGLQFKYEQPLL
>NC_020888.1|WP_015487064.1|2054107_2055844_-|copper-resistance-system-multicopper-oxidase
MNSKLSHNQARRRFVKGTAALTALASTGMMSSFTWASPPNKQLTGKFFNLDIGEKEVNVTGSTAKATLVNGLLPGPVLRIKEGDEVTIKVTNYLTEMTTIHWHGMILDPEMDGVPGISFPGIEPGESFDYKFKVVQSGTYWYHAHTLAEQTGVYGALIIDSLNPLEEERVDRDYPVVLSDWTDEDPVDVYLNLKKMGGYYNYQQLTAGDFINDVSNVGLAKAFKQRQPWNKARMSPTDFSDISAATYTYLMNGNSPASNWHGIANKGEKVRLRFIGASTATFFDIRIPGLKLKVVSTDGQNVQPVVVDEFRIGPGETYDVIVEIPDNQAYSVFAQALDRSGYVSGTLSAQKSMKASPPPIDAPVLLSMVDMMGEMGKSSSDKGMQMMPNHLAMQKMENQGLAKASKQVRHASTEFGAGVDMRVDMPRTNLDDPGAGLRNTGRRALTYADLKSLKVPEDTRTPTREIEMHLTGNMERFIWSIDGLKLNEAKPLHFPLGERIRVILHNDSNMLHPMHLHGMWSDLESPEGGFQVRKHTITVQPAQRVSFLVTVDAPGRWAFHCHLLYHMAAGMFREVVVA
>NC_020888.1|WP_007103506.1|2053130_2054111_-|copper-resistance-protein-B
MKIFNQHSINGFLITLFLSIMLPNMVRASEKDTSVNNARMKMDSNQSKEKEKPQSSMSMKTDSNESMGKEKAPDSMSMKMNSNDNKATGTRDPFANSGGYEYTGMGGWEETDEMTVSKVIFDQLEYRNGNNTKLNRWDMQGWRGTDYEKFWVKFEGRDIKSESGGEFEVQGLYSKAVSAYWDIQYGARYDRAYGSGKNDERYFGVIGVQGLAPYWFEVEPALFVDSNGKISARIVAAYDLLLSQRLILQPRAEINASASDLPELGIGQGVNDFQLDLRLRYEFKREIAPYIGITWQKKYGDSAKYSQQQDSSSEFTEVVLGVRIWF
>NC_020888.1|WP_007103505.1|2052300_2052990_-|VIT-family-protein
MSNKELHRSDRVGWLRAAVLGANDGIVSTASLIIGFAVASATQENILLAGIAGLVAGAMSMAAGEYVSVSSQSDTENADLALEKKSLEQDFTFELNELSKIYEGRGLEPDLAAEVAKQLMAHDALGAHARDEIGISENVNAQPIQAAFYSAGTFTVGAALPLLVAWFIPGNLLIYTVAILSLVFLALLGGLAARAGGASITVGASRVAFWGALAMALTAGVGRLFGVAT
>NC_020888.1|WP_015487063.1|2051680_2052256_-|cytochrome-b/b6-domain-containing-protein
MNIFNTTKQYLQERQTRSVSILHVAIIVLISSQLIVSNFMAFSDTGDLSSNTIEFYGTWLHIITGLFLIPVAITFLIVELRRHSLKHFFPYLYGEFTQLGGDIKHLLKFKLPEASDYGIAGSIQGLGLGALFLVLFTGLLWFITWNANLSWSHDIEDVHKLLTGLVQAYMIGHGVMGVLHIFVYSKSLKGG
>NC_020888.1|WP_015487062.1|2049535_2051125_-|hypothetical-protein
MNPKLPYIISLVAYLCGANLVLAASEEAQPNCDQTTNLNLKTNDIFDLTDPDTIFLHHWANLLHIKTKDITLINESAFFIQKCDIAQADIDELERHLRKQKYIREAKVTVNDDNKVDVETWDNWSLMPTVDFGRKGGINKYAIGIKDRNLLGLGIDAELEYFSNNQRTGYKFDTHFPLFLDRNINASIRLTSSDDGSSRAIFLNKNFVSFDTEQAYKVGINNFNQIDTQFQNGVTVAKYNHDQSYAVAHWQWLLSDSNNETLRYGIGYIRDKHQFSDLAIPTLFTSGYLPENRDYQYPFLSLEYLQKDYRKLTNFNLINQIEDFNIGWHVYGLIGRDFSNTPQSPDAIWEFTFSKGLQTSENGFLFFDGQFKGEFNSTSVTQDRTQLSFSTEYFHKFNNNWGAYFKNSNTISKNPFLDAPIALGDDSGVRGYPLNYQHGKSTTQFTLEARYYPHINIYKLFELGGAAFIDTGKAFGDSPIGNVNNSTLTSVGLGARFYSTHSSEAQVIHIDIVKPLSTDMGFWGHLNRP
>NC_020888.1|WP_173391449.1|2048380_2049531_+|IS3-family-transposase
MAGERYNEEFKIAAVKQVTEHGYSIADVAQRLGITTKSLYNWRDRYGENAQAYHEKQSSHEELRKLKAELKRVTEERDILKGGRRVLCCRVKEKYTFIKSRTDRYSVRTLCRTLEVHPSGFYAWLANPESIRQKVDEYLLGFIKQFWLESGCVYGYRKIHKDLKHAGEHCGKTRVHRLMQQAQIQAERGYNRKTRYDSGELSTVAPNLLNREFDVSKPNTVWVTDITYIRTYEGWLFLAVIIDLFSRQVVGWSMSERINTDLVLNAITMACWRRKPKGEVIVHSDQGCQYTSYDWQSMLKANNLTVSMSRRGNCHDNACAESFFALLKRERIRRKIYRTREEGKADIFNYIELFYNSTRRHGNNSDLSPRDYENNYFLKQMGV
>NC_020888.1|WP_015487060.1|2046760_2048158_-|RHS-repeat-associated-core-domain-containing-protein
MRQATANLSTTYIDDDLKHIIDSGESVDKESWIHTIKVNGQAVAVIDKTLGEADKVSFIHRDLVGNADTVTDIHGNIMRITKADEQVPAYPVYAPYGELLGYASKTDNALEGEGTVAEQGSYREAFERKSSANDEIAEFIDIKMKETGINVNNCTLGKVCSQSTGQTRVTFTAASQASFQGQIIDQLPGFTGHETLKEHGLVHMNGRIYSPKYARFLSADPTVPYPTRWYSYNRYMYVGGNPASRYDPSGFTDLYADGQCPSCNEPPIVVTAPAPPPPQPFDQYWAQQITTNAINQSINQTNNSFAQKGYSPEKGGWHDYTVGPNSVCAAALACTQKEMVDQFARFAVPGQDPSKPVSDGSTYWVFDPRNGIPAGKVLTTVSDNGMSIINTTLSLHVLHDGQITRNLSQDDRGAWFVTTRGIGNNVIPLTSIGCDTCASVNSWQGPKIFNYVDAQMRANIEAHHR
>NC_020888.1|WP_015487068.1|2060640_2061165_+|hypothetical-protein
MYEESLKAMNATDKEHIIAFLDAIRSTSKNLNDRPHREVIAEELQNSWKSHQQQTIFISRFFKDDTSAKLSLINDNVNTCSLLNGPFDSEIEVIIALDALIHSDGLAGVKLLIGKLRNQFNSSNYRTKNKDAKQINSMIPNDLIEKLDKTAANKGIKRNELIVRLLREGLKSKT
>NC_020888.1|WP_015487069.1|2061476_2062058_-|nitroreductase
MDAIKAITERVSVPQLTGPDITMAQKETLFQAALRAPDHAWLRPSRYITISGDARSTLGEIFLQSTPEWESLSEERQQKLRGMLQRAPLVIVAVTRVQDHPKVPRDELLLSTGAGIQNMLTAAWALGLGAIWRTGDMVHSEGVRQALELTTDDVITGFVYIGHVNCTLKQPPVMLSTDFVSEWNGETLVKTND
>NC_020888.1|WP_015487070.1|2062233_2063622_+|adenylate-cyclase
MASPQDLSHFSETTLPRQDYVARIFGYGVAALAMFAAMHYGYYGEQMMIVPVIALTYPHLIYILSRPFRRRRAYITRQFLIHGDALWCGLFLGYINFPMELVVLFLIMINTSFIVVGSFTAWAFCIVSLISGAAAAYLVIGYTPMPQLPTEVFLITATGVGVHLALTAYNSYRQARDLIRLKLKFQGQVERFQALSHQVSKYVAPQVWESIFSGRRQARLETQRKKLVVFFSDIVGFSALSEQMEAEAFTDLLNTYLTDMSQIALKYGGTIDKFIGDGIMIFFGDPKTKGTKRDALACVSMAIEMRRHMDKLRQRWAEHGLTTPLQIRMGISTGYCTVGNFGTESRMDYTIIGKEVNLASRLETEAEAGEILISQDTYSLVRDRIVCRSRSNAIVKGFRDPIPTFQVVDYRLDNGIDNNYVNHDIEGFALHMETDKIREEDKDKVADALEKAARKLRGKCVA
>NC_020888.1|WP_015487071.1|2063653_2064490_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MASVHSDNNPLGQVSAYRDTYDPSVLFPIERDESWRAQGLDRNQFPFFGVDIWNGYEISWLNAKGKPLVCTAEFRIPATSRYLIESKSFKLYLNSFNQSRFDSVDAVRALMVADLSAAAGVAEGTFVDVIFHGFDTQFPLAPEAKCLDDIDIEVSSYELDPEFLRANGDEIFDGWLCSHLLKSNCPVTGQPDWGSIFVYYRGSKIDEAGLLQYLVSLRQHQDFHEQCVERTFRDISARCQPEALTVYARYVRRGGLDINPFRSSMTDAKAENFRLFRQ
>NC_020888.1|WP_015487072.1|2064504_2065281_-|ABC-transporter-permease
MSLMRVQWVAFNTILVKEVRRFMRIWQQTLLPPAITMTLYFVIFGTLIGSRIGEMGGVDYMSFIVPGLIMMSVITNAYGNVSSSFFSNKFQRSVEEMMVAPVHPVTILLGYLGGGVVRGVLVGAIVTLLSLYFTDLKIYNIWIVVSVILLSAILFSLGGFINGVFATKFDDIAIIPTFIITPLTYLGGVFYSINLLPEFWQGVSKLNPILYMVNTFRYGVMGVSDVSVVFAFGMLIFFIVILAAYSVWLLQRGVGMRQ
>NC_020888.1|WP_015487073.1|2065277_2066198_-|ABC-transporter-ATP-binding-protein
MVPALMVEGLAKVYGNGFEALKGINLTVQQGDFFALLGPNGAGKSTTLGIVSSLIQKTSGSASIMGFDVSKQAFDAKRHLGVVPQEFNFNQFEKVYDIVVTQAGYFGMTRKEAATSTEKLLRQLDLWDKRDQPSRMLSGGMKRRLMIARALVHGPKVLILDEPTAGVDIELRRSMWAFMQELNKSGTTIILTTHYLEEAEQLCRNIAIINKGHIVKCMSTRELLSQLKTETFVFDLISPVAESFNLPGFETNIANLESIEVTVEKGQSINQIFALLTEQGAEVRSMRTKSNRLEELFVGLVQGDNA
>NC_020888.1|WP_015487074.1|2066222_2066600_+|hypothetical-protein
MSERLDYHLGLLKNTQTRLLNASKQDSTAISEEILQQLQLVIDQLVQQTGSGYESGHDLLANIATHHPQLMPAIDRDLLWFFGGDCLHFLADDEIERFQRLEDMAAEAESDGKTFDYQAAHGALR
>NC_020888.1|WP_015487076.1|2067461_2068211_+|hypothetical-protein
MSTSLLIAIAIVTAFAALAALTFSRWLEQRRLERLRQAVMHSDNMNKACLYGEELSKWLSPEALQFIARVIQYHQEQIQLLGIPPNARTNRAAAMAEEWQNNPPPPLSYPMPKDLKKAQALRQSVVSLLELVKEAYGHQIVETNIARQVIKEGRMLNTRICIGVYQARAQNALKQNSPNQAIHFLKRAEDALRALGELPHDLQELMSALSEEITNLEQQRYETHTSSRLSAETEELAEADEAWKKKNYD
>NC_020888.1|WP_015487077.1|2068201_2068672_-|MarR-family-transcriptional-regulator
MSIKKYPHLYLSNQTCFAAYTVARQITQAYHPLLKLLGLTYPQYLVMLVLWEAMENNQQWLKVGDICDELMLDTGTVTPLLKRMETSGSIVRQRSESDERIVLVGLTEQGMSLRELASTVPSNLMCRAGVSIDEVASLRDHLWGWIKRWQKAKNQS
>NC_020888.1|WP_015487078.1|2068671_2069157_-|glutathione-peroxidase
MTVLNYTMPLLNGVEQDLSEYAGKVVLVVNTASKCGFTYQYEGLESMYNAYKDKGLVILGFPCNQFGKQEQGSEAEIGAFCQKNYGVSFPMFSKIEVNGDDAAPLYQALKTAAPGLMGTKAIKWNFTKFLINRQGEVVRRYAPTTKPEELLTDVETELAQA

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Crispr_ID: NC_020888_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020888_4

2343575-2351279

TypeI

Consensus_repeat	Method
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	PILER-CR
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CRISPRCasFinder
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CRT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	PILER-CR

116 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

The CRISPR arrays of NC_020888_4

>merge|NC_020888|4|2343575-2351279|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTCTATCCGCGCGCCCGTGAAGGACGCGACATAGCGTAAATATCATTACTTATATTGCGCAACTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGATTTTTCTCGTCCTCTCCGGTGCTGAATTGCCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCAAATTGCATCAGAATTAACCGTAGCGGGAAAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTGAATCATTTTAGGCATCCATGTGCCGTACCATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCCCAGATTTTAACGGGCTGCGAAGCAGTCCACTTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATATCTACTCGCAGTGTAGAGACGTTCAGTTATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCCGCCGTAGCAGACTCTGTACCGGCTAACCAATCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATCTGGCGTTAGGACTGGATCCCACTCATACAGGTTTCTATCCGCGCGCCCTTGAAGGACGCGACTCGATCAACCCGCGCGGGGTCTTGATGGGTATGACGTTTCTATCCGCGCGCCCGTGAAGGACGCGACACGAGAGTCAGATTTTAAGCGAGGGCGGCCAGCTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATGATGGGGGCGATGGTTCACAAGCAATGTTCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTTCAGCGATAAAGCAGCCTGACGGCGTTTTAGGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATAGCTCGGTTTGTGTGAGCGGGTTGGTTTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTGGCGCGATGGCATAGCTCGGTTTGGTTTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTGCTGAATATTGTTCGCCATGTTGCTGTTGAGCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGGGTTGGTTGAGAGCACGCTTAAAACTGAGAACGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTAATTTGGCGCGGCGTATTGCGGAAGGGTGTGCGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAGGCCCGCACGACGGCGCTGTTGCGTATAGCTTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTGCGTTCATGTTGCGGTGACTGATAAGGTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTACGCATTCAAAGCGATGGCGGCAATTTTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACACACTATAAAGAGCTGGATAGCGTAAACGTTAACTGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGGCTAATGCCTCGTAGCCATTCCAAAAAACGGATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTTGAGTGATGCGCCCATCTTGCTGCCGAAAACCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTTGAGTGATGCGCCCATCTTGCTGCCGAAAACCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAGACCGCGGCGCTGTCGCCATAGCGCCCGTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTAACGGCTAGAGCGCTGCGCACCAGTGGTTTACAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGATAAGCGGTTGGGCAGATGAGGCTGACACTATTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGAAGTGGGTTAGCTCGTATTCAAGCGCTTTTGCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGACCAACTAATAAAAATATGGTCAGTGCCAGGTGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCGCGGCATCAATTACCGCCGCCACGTTACGATGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGACGCTGATGTAAAAGCCGCCCAGGAACAAACTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCGCAAAGAAAAAGACGAGTTAGCCGATGATTTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGGTAAGGCGTATAACGATTTGGCGCAGTTTACTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTAGTGGCCAAGCATTTGCTCGAGCACGGCACTTGTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGTATGGCTTGCCAATTGGGGCGCGTAGGCACGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCAGCAGCATATAGCACTAAGCGACTTACCGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCTGTCGATCCATCTGCAACAGTTATGACAACCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGAAGCCGATCGCACCGCGCTAACCGCAGTTTTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTCGCGCACTTTTTTCTGTTCTGGCTCTCGTGTCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTGCGACGAACTCTCGACAGCCATGGAAGGCACCGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCAATATCCCCAAGATTCATTGCTAAATCCATAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTCCGGTTGTCACAGCAAAATGCCCTTGCTGTAATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTGGCGATTGATCAAGCCGCTTTAATCCTGATACGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTATCTCGTTCCGCTTCCAGCGAGACATTTCTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGATTCGCGCCGCATTTGCCGGTCGAGATATGCCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTGATTGCCACCGGATAATGTGCGTTGGCATTCCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTTACGATAACCATTTCTCTTAGCTTGTCATTATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCTCGCCGTCGATTATCACTTTATCACCGGCATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTGGAGACCATTTTTCGTACTGCCCCTGGTCAATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTTATTGCGAAATTACGGAGTAACTGATTATGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTGTTGTGGCCCTCGATAAAATCAATCATTACGGTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATTCGCTCTGCTACGCAACGCACTGCAAGGCAAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCATATGGAATCAAATATCCGAGATAAGGGTATTGATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGAGTTGTTGTAAGCCACTTTTGTTTTTGAGTATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCTGCAATGCGGTTCTGGAACTGACGGATGCACAGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCAGCATTCTTAAAGCAGCTAAGAAAGGCTGATAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTTACAACGCTGTTACGAAAGGCATGGAGTTTGCGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTTGAGGCTCAGCAGTTGAAAATTGAACTAAAAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCAATAATCAGTAAAACCAATACGGAAACTGTTATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATGTCACGATCAGTAAACAAAGTCACACTTATCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCTCGACTCATGATTCCCAGTCACTCACTTTTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTCGTAACGCTGCGGCGACGCCACCAGTGCAGCGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAACCATCATGTTGTAACGCTCGCCTTTTTGAGGCTCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAATATCAACGCGAGTGCCGAGCGTTAACTCAGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCGTCGGCTGGTATCGCTGCCGGTGTCGCGGTGGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACACCAGCGCGGCGAGATATTCAAAGCGATAACTCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCGTTAATGCAGCTGCCGCGATTGCTTCTTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCGCCTACAAACCGCAGGCTGTGAAGTAACGCGCTTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACACGTCAACTAGCTGCCTTTTCCAGTTCCGAAACAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCATTGAGACGATGATCACGAAGGCGATTGTCTACGTTTCTATCCGCGCGCCCGTGAAGGACGCGACACATATAGCCGGTGATACTCCCGTGCCCACCTTGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTATTCCCAGTGCTGACCAAACGTCACACCGATTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTGCCAAATTGGATGCACATAGCTCGTACTATGCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCCCCACGCAGCAGCAGTTGTTATTGTCGGTGATTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCAACTTCATCACTTTCAATACCTTCATCGCCTTCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATATCTCATTCAATCGCCATGCAATATCCGGATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCACTTAACATCAGTGAGCAAAGTAACAGCTAGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGAAAGCACAGGGGGTGTGCCGTCAGATGACACCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTCAGCACCAGACAATACGCGACACACGGAAAAATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAGACCTTTTAACTCTGCCAATATTCGATTATTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGACTGTAAAATTTGGCAGTGTAGTTCTTACTGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTCTTCTGGTTGAGAAGTTGGAGCCGCTAATACTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGGGGGTTCAGTTTGTATTCGCTAGCAATTGCGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCGGCAAGCATGTGAGTGTTCAAGCATTCAAAGAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATTCTGAACTGTAAAATGTACCGCGAACCCTAATAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACACAAAAACACGACACGTGACGAGCTTCTTTATATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAGTAGCCATTAGATGCAAAGCATTCTTTGAAGCCGTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTAATATCTGTATTAGCGCACATTGCTAAGATTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCCGCCCTTGCTGACAGGCTTGATGTGATCAATGTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAATGAGTAAGAGGGTTGTTAAAGAATTAAACCAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCAGATGGCGAGTTTAAGTCTCAAGTGTCTAATCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTATAAATGCCTTTTTGGTGGTCGTGGCGGCATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAATATTGAATGTTATCAATGCTATTGTGGCCATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAGTTATATTCCCGTATAGGGATGAAGTCTACAATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCCAGATAGGTCAACACGCTTGCCAGCAACTGATTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCCATTCGCCACACTTAAAAGCAAAGCCGGGTTTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACATAGCCTGCGCAGTTGAAGAAAGAGACTTCTCTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAAAAATCACCGGCGACGCCGTTGAGCATTACCGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGAGGTAGCTATATTATTGAGACCGACGCAATCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTCAAACGCTGCTAGACCTAATTCGGTCCAAGCCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTAAGGAGTGCCCCAGCAGCATAACTACTGGGGCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGGAATGGTTTACCAGTAACCTGACTAGCTAATAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGAGGCGATTCGCGGATTCAGCTTTAATCAGTATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCTTTCGCTCATAGGTGTTTCTCAACGCTCACATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGTTGTTTAATGACAACCATCCCCGACTGGATAAAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTTGCATACCGCCGAACACAAACTTCCCTTTCGATGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCAACAGCCGGGTGGCGCATCTGTATCATTTTACCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACCTTTGGTATCGGGTAAAGGCGCTTAACAATTTCAGGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTTCAGGGGTTCCTGCGCTTGCTACTTCTGTCGCTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTGGCACTGAGTTTAATTTGACGCCTGAGAGATTTTGCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGGTCTTGCCGATGACCTAACCGGCAAAACAGCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTTATATGCAAAATGCATTCTATCTTGATGTACCAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGAAGTTGTTGCTGTTGAAGTTAATGAGAGACTTGGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGAGCACCCATACCAAACAACTCGGCGGCGATGCGTGTTTCTATCCGCGCGCCCGTGAAGGACGCGACAGCCCGAATATCAAGCCTAGTCTGCGTCATAGCCGTTTCTATCCGCGCGCCCGTGAAGGACGCGACTCCTGAAGGTGAGTTCAAGTCTCAAGTATCCAATTTGTTTCTATCCGCGCGCCCGTGAAGGACGCGAC

>NC_020888|4|1|2343575-2345653|PILER-CR
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCGTAAATATCATTACTTATATTGCGCAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTTTTCTCGTCCTCTCCGGTGCTGAATTGCCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAAATTGCATCAGAATTAACCGTAGCGGGAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGAATCATTTTAGGCATCCATGTGCCGTACCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCAGATTTTAACGGGCTGCGAAGCAGTCCACTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTACTCGCAGTGTAGAGACGTTCAGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCGTAGCAGACTCTGTACCGGCTAACCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATCTGGCGTTAGGACTGGATCCCACTCATACAG
GTTTCTATCCGCGCGCCCTTGAAGGACGCGAC	TCGATCAACCCGCGCGGGGTCTTGATGGGTATGAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGAGAGTCAGATTTTAAGCGAGGGCGGCCAGCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGATGGGGGCGATGGTTCACAAGCAATGTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGCGATAAAGCAGCCTGACGGCGTTTTAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCTCGGTTTGTGTGAGCGGGTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCGCGATGGCATAGCTCGGTTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TGCTGAATATTGTTCGCCATGTTGCTGTTGAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGGTTGGTTGAGAGCACGCTTAAAACTGAGAAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAATTTGGCGCGGCGTATTGCGGAAGGGTGTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGGCCCGCACGACGGCGCTGTTGCGTATAGCTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTGCGTTCATGTTGCGGTGACTGATAAGGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTACGCATTCAAAGCGATGGCGGCAATTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACACTATAAAGAGCTGGATAGCGTAAACGTTAACTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGCTAATGCCTCGTAGCCATTCCAAAAAACGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCGCGGCGCTGTCGCCATAGCGCCCGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAACGGCTAGAGCGCTGCGCACCAGTGGTTTACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATAAGCGGTTGGGCAGATGAGGCTGACACTATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGTGGGTTAGCTCGTATTCAAGCGCTTTTGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACCAACTAATAAAAATATGGTCAGTGCCAGGTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGCGGCATCAATTACCGCCGCCACGTTACGATG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGACGCTGATGTAAAAGCCGCCCAGGAACAAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCGCAAAGAAAAAGACGAGTTAGCCGATGATTTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGGTAAGGCGTATAACGATTTGGCGCAGTTTACTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAGTGGCCAAGCATTTGCTCGAGCACGGCACTTGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGTATGGCTTGCCAATTGGGGCGCGTAGGCACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCAGCAGCATATAGCACTAAGCGACTTACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGTCGATCCATCTGCAACAGTTATGACAACCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGCCGATCGCACCGCGCTAACCGCAGTTTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGCGCACTTTTTTCTGTTCTGGCTCTCGTGTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGCGACGAACTCTCGACAGCCATGGAAGGCACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCAATATCCCCAAGATTCATTGCTAAATCCATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCCGGTTGTCACAGCAAAATGCCCTTGCTGTAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGCGATTGATCAAGCCGCTTTAATCCTGATACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTATCTCGTTCCGCTTCCAGCGAGACATTTCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTCGCGCCGCATTTGCCGGTCGAGATATGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGATTGCCACCGGATAATGTGCGTTGGCATTCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACGATAACCATTTCTCTTAGCTTGTCATTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCTCGCCGTCGATTATCACTTTATCACCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGAGACCATTTTTCGTACTGCCCCTGGTCAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTATTGCGAAATTACGGAGTAACTGATTATGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGTTGTGGCCCTCGATAAAATCAATCATTACGGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCGCTCTGCTACGCAACGCACTGCAAGGCAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATATGGAATCAAATATCCGAGATAAGGGTATTGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAGTTGTTGTAAGCCACTTTTGTTTTTGAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGCAATGCGGTTCTGGAACTGACGGATGCACAG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGCATTCTTAAAGCAGCTAAGAAAGGCTGATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACAACGCTGTTACGAAAGGCATGGAGTTTGCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGGCTCAGCAGTTGAAAATTGAACTAAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAATAATCAGTAAAACCAATACGGAAACTGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGTCACGATCAGTAAACAAAGTCACACTTATC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTCGACTCATGATTCCCAGTCACTCACTTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGTAACGCTGCGGCGACGCCACCAGTGCAGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AACCATCATGTTGTAACGCTCGCCTTTTTGAGGCTC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATCAACGCGAGTGCCGAGCGTTAACTCAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTCGGCTGGTATCGCTGCCGGTGTCGCGGTGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACCAGCGCGGCGAGATATTCAAAGCGATAACTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTTAATGCAGCTGCCGCGATTGCTTCTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGCCTACAAACCGCAGGCTGTGAAGTAACGCGCTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGTCAACTAGCTGCCTTTTCCAGTTCCGAAACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATTGAGACGATGATCACGAAGGCGATTGTCTAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACATATAGCCGGTGATACTCCCGTGCCCACCTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATTCCCAGTGCTGACCAAACGTCACACCGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGCCAAATTGGATGCACATAGCTCGTACTATGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCCACGCAGCAGCAGTTGTTATTGTCGGTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACTTCATCACTTTCAATACCTTCATCGCCTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTCATTCAATCGCCATGCAATATCCGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCACTTAACATCAGTGAGCAAAGTAACAGCTAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAAGCACAGGGGGTGTGCCGTCAGATGACACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCAGCACCAGACAATACGCGACACACGGAAAAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCTTTTAACTCTGCCAATATTCGATTATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACTGTAAAATTTGGCAGTGTAGTTCTTACTGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCTTCTGGTTGAGAAGTTGGAGCCGCTAATACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGGGGTTCAGTTTGTATTCGCTAGCAATTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGGCAAGCATGTGAGTGTTCAAGCATTCAAAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCTGAACTGTAAAATGTACCGCGAACCCTAATA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACAAAAACACGACACGTGACGAGCTTCTTTATAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTAGCCATTAGATGCAAAGCATTCTTTGAAGCCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTAATATCTGTATTAGCGCACATTGCTAAGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCCTTGCTGACAGGCTTGATGTGATCAATGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATGAGTAAGAGGGTTGTTAAAGAATTAAACCAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGATGGCGAGTTTAAGTCTCAAGTGTCTAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATAAATGCCTTTTTGGTGGTCGTGGCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATTGAATGTTATCAATGCTATTGTGGCCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTTATATTCCCGTATAGGGATGAAGTCTACAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCAGATAGGTCAACACGCTTGCCAGCAACTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCATTCGCCACACTTAAAAGCAAAGCCGGGTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCCTGCGCAGTTGAAGAAAGAGACTTCTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AAAAATCACCGGCGACGCCGTTGAGCATTACCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGTAGCTATATTATTGAGACCGACGCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCAAACGCTGCTAGACCTAATTCGGTCCAAGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTAAGGAGTGCCCCAGCAGCATAACTACTGGGGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGAATGGTTTACCAGTAACCTGACTAGCTAATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGCGATTCGCGGATTCAGCTTTAATCAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTTTCGCTCATAGGTGTTTCTCAACGCTCACAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTGTTTAATGACAACCATCCCCGACTGGATAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTGCATACCGCCGAACACAAACTTCCCTTTCGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACAGCCGGGTGGCGCATCTGTATCATTTTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTTGGTATCGGGTAAAGGCGCTTAACAATTTCAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGGGGTTCCTGCGCTTGCTACTTCTGTCGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCACTGAGTTTAATTTGACGCCTGAGAGATTTTGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGTCTTGCCGATGACCTAACCGGCAAAACAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTATATGCAAAATGCATTCTATCTTGATGTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAGTTGTTGCTGTTGAAGTTAATGAGAGACTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGCACCCATACCAAACAACTCGGCGGCGATGCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGCCCGAATATCAAGCCTAGTCTGCGTCATAGCC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCCTGAAGGTGAGTTCAAGTCTCAAGTATCCAATTT


>NC_020888|4|4|2343575-2351279|CRISPRCasFinder
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCGTAAATATCATTACTTATATTGCGCAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTTTTCTCGTCCTCTCCGGTGCTGAATTGCCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAAATTGCATCAGAATTAACCGTAGCGGGAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGAATCATTTTAGGCATCCATGTGCCGTACCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCAGATTTTAACGGGCTGCGAAGCAGTCCACTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTACTCGCAGTGTAGAGACGTTCAGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCGTAGCAGACTCTGTACCGGCTAACCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATCTGGCGTTAGGACTGGATCCCACTCATACAG
GTTTCTATCCGCGCGCCCTTGAAGGACGCGAC	TCGATCAACCCGCGCGGGGTCTTGATGGGTATGAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGAGAGTCAGATTTTAAGCGAGGGCGGCCAGCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGATGGGGGCGATGGTTCACAAGCAATGTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGCGATAAAGCAGCCTGACGGCGTTTTAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCTCGGTTTGTGTGAGCGGGTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCGCGATGGCATAGCTCGGTTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TGCTGAATATTGTTCGCCATGTTGCTGTTGAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGGTTGGTTGAGAGCACGCTTAAAACTGAGAAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAATTTGGCGCGGCGTATTGCGGAAGGGTGTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGGCCCGCACGACGGCGCTGTTGCGTATAGCTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTGCGTTCATGTTGCGGTGACTGATAAGGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTACGCATTCAAAGCGATGGCGGCAATTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACACTATAAAGAGCTGGATAGCGTAAACGTTAACTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGCTAATGCCTCGTAGCCATTCCAAAAAACGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCGCGGCGCTGTCGCCATAGCGCCCGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAACGGCTAGAGCGCTGCGCACCAGTGGTTTACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATAAGCGGTTGGGCAGATGAGGCTGACACTATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGTGGGTTAGCTCGTATTCAAGCGCTTTTGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACCAACTAATAAAAATATGGTCAGTGCCAGGTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGCGGCATCAATTACCGCCGCCACGTTACGATG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGACGCTGATGTAAAAGCCGCCCAGGAACAAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGCAAAGAAAAAGACGAGTTAGCCGATGATTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGTAAGGCGTATAACGATTTGGCGCAGTTTACTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAGTGGCCAAGCATTTGCTCGAGCACGGCACTTGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGTATGGCTTGCCAATTGGGGCGCGTAGGCACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCAGCAGCATATAGCACTAAGCGACTTACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGTCGATCCATCTGCAACAGTTATGACAACCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGCCGATCGCACCGCGCTAACCGCAGTTTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGCGCACTTTTTTCTGTTCTGGCTCTCGTGTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGCGACGAACTCTCGACAGCCATGGAAGGCACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCAATATCCCCAAGATTCATTGCTAAATCCATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCCGGTTGTCACAGCAAAATGCCCTTGCTGTAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGCGATTGATCAAGCCGCTTTAATCCTGATACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTATCTCGTTCCGCTTCCAGCGAGACATTTCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTCGCGCCGCATTTGCCGGTCGAGATATGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGATTGCCACCGGATAATGTGCGTTGGCATTCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACGATAACCATTTCTCTTAGCTTGTCATTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCTCGCCGTCGATTATCACTTTATCACCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGAGACCATTTTTCGTACTGCCCCTGGTCAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTATTGCGAAATTACGGAGTAACTGATTATGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGTTGTGGCCCTCGATAAAATCAATCATTACGGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCGCTCTGCTACGCAACGCACTGCAAGGCAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATATGGAATCAAATATCCGAGATAAGGGTATTGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAGTTGTTGTAAGCCACTTTTGTTTTTGAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGCAATGCGGTTCTGGAACTGACGGATGCACAG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGCATTCTTAAAGCAGCTAAGAAAGGCTGATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACAACGCTGTTACGAAAGGCATGGAGTTTGCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGGCTCAGCAGTTGAAAATTGAACTAAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAATAATCAGTAAAACCAATACGGAAACTGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGTCACGATCAGTAAACAAAGTCACACTTATC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTCGACTCATGATTCCCAGTCACTCACTTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGTAACGCTGCGGCGACGCCACCAGTGCAGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AACCATCATGTTGTAACGCTCGCCTTTTTGAGGCTC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATCAACGCGAGTGCCGAGCGTTAACTCAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTCGGCTGGTATCGCTGCCGGTGTCGCGGTGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACCAGCGCGGCGAGATATTCAAAGCGATAACTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTTAATGCAGCTGCCGCGATTGCTTCTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGCCTACAAACCGCAGGCTGTGAAGTAACGCGCTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGTCAACTAGCTGCCTTTTCCAGTTCCGAAACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATTGAGACGATGATCACGAAGGCGATTGTCTAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACATATAGCCGGTGATACTCCCGTGCCCACCTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATTCCCAGTGCTGACCAAACGTCACACCGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGCCAAATTGGATGCACATAGCTCGTACTATGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCCACGCAGCAGCAGTTGTTATTGTCGGTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACTTCATCACTTTCAATACCTTCATCGCCTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTCATTCAATCGCCATGCAATATCCGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCACTTAACATCAGTGAGCAAAGTAACAGCTAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAAGCACAGGGGGTGTGCCGTCAGATGACACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCAGCACCAGACAATACGCGACACACGGAAAAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCTTTTAACTCTGCCAATATTCGATTATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACTGTAAAATTTGGCAGTGTAGTTCTTACTGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCTTCTGGTTGAGAAGTTGGAGCCGCTAATACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGGGGTTCAGTTTGTATTCGCTAGCAATTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGGCAAGCATGTGAGTGTTCAAGCATTCAAAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCTGAACTGTAAAATGTACCGCGAACCCTAATA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACAAAAACACGACACGTGACGAGCTTCTTTATAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTAGCCATTAGATGCAAAGCATTCTTTGAAGCCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTAATATCTGTATTAGCGCACATTGCTAAGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCCTTGCTGACAGGCTTGATGTGATCAATGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATGAGTAAGAGGGTTGTTAAAGAATTAAACCAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGATGGCGAGTTTAAGTCTCAAGTGTCTAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATAAATGCCTTTTTGGTGGTCGTGGCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATTGAATGTTATCAATGCTATTGTGGCCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTTATATTCCCGTATAGGGATGAAGTCTACAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCAGATAGGTCAACACGCTTGCCAGCAACTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCATTCGCCACACTTAAAAGCAAAGCCGGGTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCCTGCGCAGTTGAAGAAAGAGACTTCTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AAAAATCACCGGCGACGCCGTTGAGCATTACCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGTAGCTATATTATTGAGACCGACGCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCAAACGCTGCTAGACCTAATTCGGTCCAAGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTAAGGAGTGCCCCAGCAGCATAACTACTGGGGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGAATGGTTTACCAGTAACCTGACTAGCTAATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGCGATTCGCGGATTCAGCTTTAATCAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTTTCGCTCATAGGTGTTTCTCAACGCTCACAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTGTTTAATGACAACCATCCCCGACTGGATAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTGCATACCGCCGAACACAAACTTCCCTTTCGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACAGCCGGGTGGCGCATCTGTATCATTTTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTTGGTATCGGGTAAAGGCGCTTAACAATTTCAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGGGGTTCCTGCGCTTGCTACTTCTGTCGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCACTGAGTTTAATTTGACGCCTGAGAGATTTTGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGTCTTGCCGATGACCTAACCGGCAAAACAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTATATGCAAAATGCATTCTATCTTGATGTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAGTTGTTGCTGTTGAAGTTAATGAGAGACTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGCACCCATACCAAACAACTCGGCGGCGATGCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGCCCGAATATCAAGCCTAGTCTGCGTCATAGCC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCCTGAAGGTGAGTTCAAGTCTCAAGTATCCAATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC

>NC_020888|4|1|2343575-2351279|CRT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCGTAAATATCATTACTTATATTGCGCAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTTTTCTCGTCCTCTCCGGTGCTGAATTGCCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAAATTGCATCAGAATTAACCGTAGCGGGAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGAATCATTTTAGGCATCCATGTGCCGTACCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCAGATTTTAACGGGCTGCGAAGCAGTCCACTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTACTCGCAGTGTAGAGACGTTCAGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCGTAGCAGACTCTGTACCGGCTAACCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATCTGGCGTTAGGACTGGATCCCACTCATACAG
GTTTCTATCCGCGCGCCCTTGAAGGACGCGAC	TCGATCAACCCGCGCGGGGTCTTGATGGGTATGAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGAGAGTCAGATTTTAAGCGAGGGCGGCCAGCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGATGGGGGCGATGGTTCACAAGCAATGTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGCGATAAAGCAGCCTGACGGCGTTTTAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCTCGGTTTGTGTGAGCGGGTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCGCGATGGCATAGCTCGGTTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TGCTGAATATTGTTCGCCATGTTGCTGTTGAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGGTTGGTTGAGAGCACGCTTAAAACTGAGAAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAATTTGGCGCGGCGTATTGCGGAAGGGTGTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGGCCCGCACGACGGCGCTGTTGCGTATAGCTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTGCGTTCATGTTGCGGTGACTGATAAGGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTACGCATTCAAAGCGATGGCGGCAATTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACACTATAAAGAGCTGGATAGCGTAAACGTTAACTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGCTAATGCCTCGTAGCCATTCCAAAAAACGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCGCGGCGCTGTCGCCATAGCGCCCGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAACGGCTAGAGCGCTGCGCACCAGTGGTTTACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATAAGCGGTTGGGCAGATGAGGCTGACACTATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGTGGGTTAGCTCGTATTCAAGCGCTTTTGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACCAACTAATAAAAATATGGTCAGTGCCAGGTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGCGGCATCAATTACCGCCGCCACGTTACGATG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGACGCTGATGTAAAAGCCGCCCAGGAACAAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGCAAAGAAAAAGACGAGTTAGCCGATGATTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGTAAGGCGTATAACGATTTGGCGCAGTTTACTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAGTGGCCAAGCATTTGCTCGAGCACGGCACTTGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGTATGGCTTGCCAATTGGGGCGCGTAGGCACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCAGCAGCATATAGCACTAAGCGACTTACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGTCGATCCATCTGCAACAGTTATGACAACCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGCCGATCGCACCGCGCTAACCGCAGTTTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGCGCACTTTTTTCTGTTCTGGCTCTCGTGTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGCGACGAACTCTCGACAGCCATGGAAGGCACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCAATATCCCCAAGATTCATTGCTAAATCCATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCCGGTTGTCACAGCAAAATGCCCTTGCTGTAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGCGATTGATCAAGCCGCTTTAATCCTGATACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTATCTCGTTCCGCTTCCAGCGAGACATTTCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTCGCGCCGCATTTGCCGGTCGAGATATGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGATTGCCACCGGATAATGTGCGTTGGCATTCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACGATAACCATTTCTCTTAGCTTGTCATTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCTCGCCGTCGATTATCACTTTATCACCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGAGACCATTTTTCGTACTGCCCCTGGTCAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTATTGCGAAATTACGGAGTAACTGATTATGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGTTGTGGCCCTCGATAAAATCAATCATTACGGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCGCTCTGCTACGCAACGCACTGCAAGGCAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATATGGAATCAAATATCCGAGATAAGGGTATTGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAGTTGTTGTAAGCCACTTTTGTTTTTGAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGCAATGCGGTTCTGGAACTGACGGATGCACAG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGCATTCTTAAAGCAGCTAAGAAAGGCTGATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACAACGCTGTTACGAAAGGCATGGAGTTTGCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGGCTCAGCAGTTGAAAATTGAACTAAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAATAATCAGTAAAACCAATACGGAAACTGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGTCACGATCAGTAAACAAAGTCACACTTATC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTCGACTCATGATTCCCAGTCACTCACTTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGTAACGCTGCGGCGACGCCACCAGTGCAGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AACCATCATGTTGTAACGCTCGCCTTTTTGAGGCTC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATCAACGCGAGTGCCGAGCGTTAACTCAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTCGGCTGGTATCGCTGCCGGTGTCGCGGTGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACCAGCGCGGCGAGATATTCAAAGCGATAACTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTTAATGCAGCTGCCGCGATTGCTTCTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGCCTACAAACCGCAGGCTGTGAAGTAACGCGCTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGTCAACTAGCTGCCTTTTCCAGTTCCGAAACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATTGAGACGATGATCACGAAGGCGATTGTCTAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACATATAGCCGGTGATACTCCCGTGCCCACCTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATTCCCAGTGCTGACCAAACGTCACACCGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGCCAAATTGGATGCACATAGCTCGTACTATGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCCACGCAGCAGCAGTTGTTATTGTCGGTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACTTCATCACTTTCAATACCTTCATCGCCTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTCATTCAATCGCCATGCAATATCCGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCACTTAACATCAGTGAGCAAAGTAACAGCTAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAAGCACAGGGGGTGTGCCGTCAGATGACACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCAGCACCAGACAATACGCGACACACGGAAAAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCTTTTAACTCTGCCAATATTCGATTATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACTGTAAAATTTGGCAGTGTAGTTCTTACTGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCTTCTGGTTGAGAAGTTGGAGCCGCTAATACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGGGGTTCAGTTTGTATTCGCTAGCAATTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGGCAAGCATGTGAGTGTTCAAGCATTCAAAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCTGAACTGTAAAATGTACCGCGAACCCTAATA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACAAAAACACGACACGTGACGAGCTTCTTTATAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTAGCCATTAGATGCAAAGCATTCTTTGAAGCCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTAATATCTGTATTAGCGCACATTGCTAAGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCCTTGCTGACAGGCTTGATGTGATCAATGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATGAGTAAGAGGGTTGTTAAAGAATTAAACCAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGATGGCGAGTTTAAGTCTCAAGTGTCTAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATAAATGCCTTTTTGGTGGTCGTGGCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATTGAATGTTATCAATGCTATTGTGGCCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTTATATTCCCGTATAGGGATGAAGTCTACAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCAGATAGGTCAACACGCTTGCCAGCAACTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCATTCGCCACACTTAAAAGCAAAGCCGGGTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCCTGCGCAGTTGAAGAAAGAGACTTCTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AAAAATCACCGGCGACGCCGTTGAGCATTACCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGTAGCTATATTATTGAGACCGACGCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCAAACGCTGCTAGACCTAATTCGGTCCAAGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTAAGGAGTGCCCCAGCAGCATAACTACTGGGGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGAATGGTTTACCAGTAACCTGACTAGCTAATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGCGATTCGCGGATTCAGCTTTAATCAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTTTCGCTCATAGGTGTTTCTCAACGCTCACAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTGTTTAATGACAACCATCCCCGACTGGATAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTGCATACCGCCGAACACAAACTTCCCTTTCGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACAGCCGGGTGGCGCATCTGTATCATTTTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTTGGTATCGGGTAAAGGCGCTTAACAATTTCAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGGGGTTCCTGCGCTTGCTACTTCTGTCGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCACTGAGTTTAATTTGACGCCTGAGAGATTTTGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGTCTTGCCGATGACCTAACCGGCAAAACAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTATATGCAAAATGCATTCTATCTTGATGTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAGTTGTTGCTGTTGAAGTTAATGAGAGACTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGCACCCATACCAAACAACTCGGCGGCGATGCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGCCCGAATATCAAGCCTAGTCTGCGTCATAGCC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCCTGAAGGTGAGTTCAAGTCTCAAGTATCCAATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC

>NC_020888|4|2|2345754-2351279|PILER-CR
	ATAGCGTAAATATCATTACTTATATTGCGCAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTTTTCTCGTCCTCTCCGGTGCTGAATTGCCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAAATTGCATCAGAATTAACCGTAGCGGGAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGAATCATTTTAGGCATCCATGTGCCGTACCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCAGATTTTAACGGGCTGCGAAGCAGTCCACTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTACTCGCAGTGTAGAGACGTTCAGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCGTAGCAGACTCTGTACCGGCTAACCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATCTGGCGTTAGGACTGGATCCCACTCATACAG
GTTTCTATCCGCGCGCCCTTGAAGGACGCGAC	TCGATCAACCCGCGCGGGGTCTTGATGGGTATGAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGAGAGTCAGATTTTAAGCGAGGGCGGCCAGCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGATGGGGGCGATGGTTCACAAGCAATGTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGCGATAAAGCAGCCTGACGGCGTTTTAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCTCGGTTTGTGTGAGCGGGTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCGCGATGGCATAGCTCGGTTTGGTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TGCTGAATATTGTTCGCCATGTTGCTGTTGAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGGTTGGTTGAGAGCACGCTTAAAACTGAGAAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAATTTGGCGCGGCGTATTGCGGAAGGGTGTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGGCCCGCACGACGGCGCTGTTGCGTATAGCTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTGCGTTCATGTTGCGGTGACTGATAAGGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTACGCATTCAAAGCGATGGCGGCAATTTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACACTATAAAGAGCTGGATAGCGTAAACGTTAACTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGGCTAATGCCTCGTAGCCATTCCAAAAAACGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGTGATGCGCCCATCTTGCTGCCGAAAACC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCGCGGCGCTGTCGCCATAGCGCCCGTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAACGGCTAGAGCGCTGCGCACCAGTGGTTTACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATAAGCGGTTGGGCAGATGAGGCTGACACTATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGTGGGTTAGCTCGTATTCAAGCGCTTTTGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACCAACTAATAAAAATATGGTCAGTGCCAGGTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGCGGCATCAATTACCGCCGCCACGTTACGATG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGACGCTGATGTAAAAGCCGCCCAGGAACAAACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGACGCGCAAAGAAAAAGACGAGTTAGCCGATGATTTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGACGGTAAGGCGTATAACGATTTGGCGCAGTTTACTAGTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TAGTGGCCAAGCATTTGCTCGAGCACGGCACTTGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGTATGGCTTGCCAATTGGGGCGCGTAGGCACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCAGCAGCATATAGCACTAAGCGACTTACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGTCGATCCATCTGCAACAGTTATGACAACCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAAGCCGATCGCACCGCGCTAACCGCAGTTTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGCGCACTTTTTTCTGTTCTGGCTCTCGTGTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGCGACGAACTCTCGACAGCCATGGAAGGCACCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCAATATCCCCAAGATTCATTGCTAAATCCATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCCGGTTGTCACAGCAAAATGCCCTTGCTGTAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGCGATTGATCAAGCCGCTTTAATCCTGATACG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTATCTCGTTCCGCTTCCAGCGAGACATTTCTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GATTCGCGCCGCATTTGCCGGTCGAGATATGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGATTGCCACCGGATAATGTGCGTTGGCATTCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACGATAACCATTTCTCTTAGCTTGTCATTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCTCGCCGTCGATTATCACTTTATCACCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTGGAGACCATTTTTCGTACTGCCCCTGGTCAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTATTGCGAAATTACGGAGTAACTGATTATGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGTTGTGGCCCTCGATAAAATCAATCATTACGGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCGCTCTGCTACGCAACGCACTGCAAGGCAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATATGGAATCAAATATCCGAGATAAGGGTATTGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGAGTTGTTGTAAGCCACTTTTGTTTTTGAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTGCAATGCGGTTCTGGAACTGACGGATGCACAG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGCATTCTTAAAGCAGCTAAGAAAGGCTGATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTACAACGCTGTTACGAAAGGCATGGAGTTTGCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTGAGGCTCAGCAGTTGAAAATTGAACTAAAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAATAATCAGTAAAACCAATACGGAAACTGTTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATGTCACGATCAGTAAACAAAGTCACACTTATC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTCGACTCATGATTCCCAGTCACTCACTTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTCGTAACGCTGCGGCGACGCCACCAGTGCAGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AACCATCATGTTGTAACGCTCGCCTTTTTGAGGCTC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATCAACGCGAGTGCCGAGCGTTAACTCAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTCGGCTGGTATCGCTGCCGGTGTCGCGGTGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACCAGCGCGGCGAGATATTCAAAGCGATAACTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCGTTAATGCAGCTGCCGCGATTGCTTCTTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CGCCTACAAACCGCAGGCTGTGAAGTAACGCGCTTA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACGTCAACTAGCTGCCTTTTCCAGTTCCGAAACAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CATTGAGACGATGATCACGAAGGCGATTGTCTAC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACATATAGCCGGTGATACTCCCGTGCCCACCTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATTCCCAGTGCTGACCAAACGTCACACCGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGCCAAATTGGATGCACATAGCTCGTACTATGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCCCACGCAGCAGCAGTTGTTATTGTCGGTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACTTCATCACTTTCAATACCTTCATCGCCTTCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATATCTCATTCAATCGCCATGCAATATCCGGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GCACTTAACATCAGTGAGCAAAGTAACAGCTAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAAGCACAGGGGGTGTGCCGTCAGATGACACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCAGCACCAGACAATACGCGACACACGGAAAAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGACCTTTTAACTCTGCCAATATTCGATTATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GACTGTAAAATTTGGCAGTGTAGTTCTTACTGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTCTTCTGGTTGAGAAGTTGGAGCCGCTAATACT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGGGGTTCAGTTTGTATTCGCTAGCAATTGCGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCGGCAAGCATGTGAGTGTTCAAGCATTCAAAGA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATTCTGAACTGTAAAATGTACCGCGAACCCTAATA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ACAAAAACACGACACGTGACGAGCTTCTTTATAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTAGCCATTAGATGCAAAGCATTCTTTGAAGCCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTAATATCTGTATTAGCGCACATTGCTAAGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCGCCCTTGCTGACAGGCTTGATGTGATCAATGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATGAGTAAGAGGGTTGTTAAAGAATTAAACCAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAGATGGCGAGTTTAAGTCTCAAGTGTCTAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTATAAATGCCTTTTTGGTGGTCGTGGCGGCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AATATTGAATGTTATCAATGCTATTGTGGCCAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGTTATATTCCCGTATAGGGATGAAGTCTACAAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCAGATAGGTCAACACGCTTGCCAGCAACTGATT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CCATTCGCCACACTTAAAAGCAAAGCCGGGTTTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	ATAGCCTGCGCAGTTGAAGAAAGAGACTTCTCTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AAAAATCACCGGCGACGCCGTTGAGCATTACCG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGTAGCTATATTATTGAGACCGACGCAATCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTCAAACGCTGCTAGACCTAATTCGGTCCAAGCCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTAAGGAGTGCCCCAGCAGCATAACTACTGGGGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGAATGGTTTACCAGTAACCTGACTAGCTAATAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGGCGATTCGCGGATTCAGCTTTAATCAGTAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCTTTCGCTCATAGGTGTTTCTCAACGCTCACAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GTTGTTTAATGACAACCATCCCCGACTGGATAAA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTGCATACCGCCGAACACAAACTTCCCTTTCGAT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CAACAGCCGGGTGGCGCATCTGTATCATTTTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	CTTTGGTATCGGGTAAAGGCGCTTAACAATTTCAGG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTTCAGGGGTTCCTGCGCTTGCTACTTCTGTCGCT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTGGCACTGAGTTTAATTTGACGCCTGAGAGATTTTGC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GGTCTTGCCGATGACCTAACCGGCAAAACAGCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TTATATGCAAAATGCATTCTATCTTGATGTACCA
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAAGTTGTTGCTGTTGAAGTTAATGAGAGACTTG
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	GAGCACCCATACCAAACAACTCGGCGGCGATGCGT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	AGCCCGAATATCAAGCCTAGTCTGCGTCATAGCC
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC	TCCTGAAGGTGAGTTCAAGTCTCAAGTATCCAATTT
GTTTCTATCCGCGCGCCCGTGAAGGACGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_020888.1\|WP_015487350.1\|2341789_2342032_+\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487345.1\|2339552_2339726_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487362.1\|2360662_2361718_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131945
NC_020888.1\|WP_015487361.1\|2359367_2360231_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_020888.1\|WP_015487356.1\|2353417_2354278_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_020888.1\|WP_015487357.1\|2354261_2356022_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_020888.1\|WP_015487346.1\|2339722_2340244_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487349.1\|2341334_2341592_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487352.1\|2342726_2343353_-\|AHH-domain-containing-protein	unknown	unknown	gnl\|CDD\|379603
NC_020888.1\|WP_015487355.1\|2352775_2353402_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_020888.1\|WP_041588479.1\|2337754_2338819_-\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NC_020888.1\|WP_015487358.1\|2356018_2356675_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187534
NC_020888.1\|WP_015487354.1\|2351762_2352779_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_020888.1\|WP_015487351.1\|2342154_2342724_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487360.1\|2357001_2359272_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_020888.1\|WP_015487365.1\|2362962_2363361_+\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_041588478.1\|2336645_2337758_-\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NC_020888.1\|WP_015487347.1\|2340577_2341141_-\|hypothetical-protein	unknown	unknown	unknown
NC_020888.1\|WP_015487353.1\|2351467_2351761_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_020888.1\|WP_015487344.1\|2338924_2339344_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_020888.1\|WP_015487362.1\|2360662_2361718_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|131945	TIGR02899, hypothetical_conserved_protein, spore coat assembly protein SafA. SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination].	1.33594e-06
NC_020888.1\|WP_015487360.1\|2357001_2359272_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.76305e-54
NC_020888.1\|WP_015487357.1\|2354261_2356022_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_020888.1\|WP_015487361.1\|2359367_2360231_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.58599e-12
NC_020888.1\|WP_015487352.1\|2342726_2343353_-\|AHH-domain-containing-protein	gnl\|CDD\|379603	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH. AHH is a predicted nuclease of the HNH/ENDO VII superfamily of the treble clef fold. The name is derived from the conserved motif, AHH. It is found in bacterial polymorphic toxin systems and functions as a toxin module. Like WHH and LHH, the AHH nuclease contains 4 conserved histidines of which, the first one is predicted to bind a metal-ion and the other three ones are involved in activation of a water molecule for hydrolysis.	3.21689e-14
NC_020888.1\|WP_015487355.1\|2352775_2353402_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.97912e-40
NC_020888.1\|WP_041588479.1\|2337754_2338819_-\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NC_020888.1\|WP_015487358.1\|2356018_2356675_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.31515e-104
NC_020888.1\|WP_015487354.1\|2351762_2352779_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_020888.1\|WP_015487356.1\|2353417_2354278_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.68247e-154
NC_020888.1\|WP_041588478.1\|2336645_2337758_-\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	1.76688e-171
NC_020888.1\|WP_015487353.1\|2351467_2351761_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.02736e-33

>NC_020888.1|WP_015487352.1|2342726_2343353_-|AHH-domain-containing-protein
MNPIKDVLRETVADAKSKSHADNDYKTFKRVESKFARMNRARLAAKLEQYREGGFQMTTAELMRERHSSEMLGKFLRISGFSRPGPKWEAHHIVSTIHREAVAMRLLIADDDFSIRIDDPDNGTWMPKTKADARATIYPDAIGHNRIHRQRYYRWLENTVTAFDDGAQVRAFLNTVRVQLLHGNIKDEIKLQQEIDEAEYNDWLKKNV
>NC_020888.1|WP_015487351.1|2342154_2342724_-|hypothetical-protein
MIYQLDPDFERFYSFDFDVEDLLEKMPRYSQRFRAKPRLSDWVEPEGRFYRSQCFSGDTKSVPDMSVWALGNLILNERAYGVFSEFIGMAGEFLPLTVNGCAFYMFNTLKVLNGDQVDCSNAVDIIDSGVHFGKAGFDILEDQLNKVEIFKLKEEKLVHSFVTQGFKSLCEDEGLTGLNFLQINCISSD
>NC_020888.1|WP_015487350.1|2341789_2342032_+|hypothetical-protein
MTELDRSPHPATLDDVLSLHQELYLIHRSLDSLYEFVEYHLISKDASLAAPMVCIIRDRLRQAGARYEEVLSVPNDEQMF
>NC_020888.1|WP_015487349.1|2341334_2341592_-|hypothetical-protein
MKLTPSERLSLLMDTEKLKTPFLEQRTGIKADRWKNVKSGRTELRVSEVEALKYICPEYCYWLATGEELPEAGQISPMTKKLTMS
>NC_020888.1|WP_015487347.1|2340577_2341141_-|hypothetical-protein
MFKLFNDLYKYQSYFIDNSNFLDLLDPFIGELEAMRLSVSSVAVKEFWKPLEVEVFHNEGTVDLPDLSIWRLGLVVMTKRAYESLVSLLSPFGEFLPVKLLGETGYLYHCTNIRQFSDSEVTYRMHGDIFAGVSSLKFSEGFNDHCVTGIHKVCSDTYFSKEVAMVIKEQNLTGLLLSDDLTLMAPY
>NC_020888.1|WP_015487346.1|2339722_2340244_-|hypothetical-protein
MLKPQDTLIALKLWADYQQQLVMPLREAASLVGISVSEFSKGLQRLEVAKLVVVRDGRRFVERGALLEWLCYGVRYAYPVEQIGFGRGVPTAWNCPHVKSDILPPTPATVWQQPKGTIEGVMIAPIHDSAPLAASNNALMYQALALIDAVRLGKPRELAIARELLTKLIKGTL
>NC_020888.1|WP_015487345.1|2339552_2339726_-|hypothetical-protein
MSAYDINIAQLKNIALALDDLLSEVTFVGGCTTALLVDESAFFGVRQTDDLTLMAPY
>NC_020888.1|WP_015487344.1|2338924_2339344_-|hypothetical-protein
MDKFTRNYLIVLSSLLLIGLVWYFYESPEVAKLNSALSNNAEVAAYPYRFRVFKVENGVATMGTPRSPAFAASQALVLLFPELKGVPVGAPEMFAAQQRMAEIQSKAGSIVMGFDAVSSVKWQLDEGWLRSNGVNPELL
>NC_020888.1|WP_041588479.1|2337754_2338819_-|selenide,-water-dikinase-SelD
MSNTPVTSHPIRLTEYSHGAGCGCKISPKVLDSILVSKLNIPMDANLLVGNSSKDDAAAYDIGNGQVILSTTDFFMPIADDPFDFGRIAATNAISDIYAMGGKPLMAIAILGWPINVLPPEVAQQVVDGGRQACMDAGIQLAGGHSIDSPEPIFGLAVTGIVEKSRLKQNNTASAGCVLYLTKPLGVGVLTTAQKQKKLKPEHEFLARDVMCQLNKAGADFAAIEGVEAITDVTGFGLMGHLLEICEGSGVNAVVRYGDVPTLGPVKDYIALGCLPGGTTRNFESYGHKLAPLSDEQRAVLCDPQTSGGLLVAVRPEQASAVEAVLAQHELPCCCIGELVATNTNNSARIEVLA
>NC_020888.1|WP_041588478.1|2336645_2337758_-|tRNA-2-selenouridine(34)-synthase-MnmH
MSRPDTNDFSAIFLRDTPMMDTRAPLEYAKGAFPHTVSLPLMTDAERAKVGTCYKQQGQDEAIKLGHELVSGAVKEARVQQWLAFAAANPDGYLYCFRGGLRSQITQRWLAEAGCEYPRITGGYKAMRRFLINTLERVVDQRSAIILSGRTGCAKTDLLNTLPNSIDLEGLAHHRGSTFGKRPAGQPSQIDFENNLAIQLLRKDHDLAGNDSASIILEDESLLIGRCALPAVLRARMEGSGVVVVDAELEDRVEHSFNNYILHKLGEWQAQEGEELGFAGFAADLRDSMQRVRKRLGGVRHAEISAILEAAIAAHEAGDNSQHRDWIRPMLELYYDPMYDYQLNKKAERIVFRGSANEVRDYLLNNSGSR
>NC_020888.1|WP_015487353.1|2351467_2351761_-|CRISPR-associated-endonuclease-Cas2
MLMLITYDVSVTTSDGRRRLRNIAKVCLDYGTRVQNSVFECEVTPAQFVELKNELLCIYDSDEDSLRFYYLGKKGREKVEHFGAKAVIDPHNSTLIL
>NC_020888.1|WP_015487354.1|2351762_2352779_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYITRQETYLHKERETIVIKQGDDKLAQFPSLALTNILCFGRVSVSPFLMGYLAEQGIGLSFFTEYGRFLVRMQGPETGNVLLRRTQYRVADNEEQSLNVARLMIGAKIANSRAVLQRDLRNHGENPNLLSTADKLATSLRRSKHAESLSSLMGIEGDAASAYFSSFQERVRSPGFNFNGRVRRPPTDPVNALLSFAYSMITQECVSALQGVGLDPYVGFLHQDRPGRPSLALDLLEEFRAGWADRLVLTLINRQQLKLKDFTHEASGAVRLTDDGRKTFLTHFQERKREELLHPYLKEKIPLGLLPHCQATLLARHLRGDMEYYPPWLVK
>NC_020888.1|WP_015487355.1|2352775_2353402_-|CRISPR-associated-protein-Cas4
MDNQKITLFISAIQHYAYCPRQFALIHVEQAWADNRFTAEGNLLHQRVDAGDPEQRGKVRFERAVQLKSERLGLVGKLDLLEVEQTASGSEFRPVEYKRGKAKMQNWDRLQVCAQALCLEEMRGITVTEGAIWYWETRHREKIVIDSVLRKETEDAIHAAKELLSQGRTPPPVVDKKRCKACSLVDLCEPEAFRQDHSATYIRTIFES
>NC_020888.1|WP_015487356.1|2353417_2354278_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLQNRYDFLYLFDVKDGNPNGDPDAGNLPRIDAETGMGLVTDVCLKRKVRNFVQLTQQEKTGYKIFVKEKAILNNLIDESHEQEAVASKEKGDKTEAAKQWMCDNYFDVRTFGAVMSTGKNAGQVRGPIQLTFSRSIDPIVASEHSITRMAVTTEKESESQKGDNRTMGRKFTVPYGLYLCKGFISANLANQTGFGEEDLTLFWQSLEQMFDHDRSASRGEMSPRGLYIFKHSNELGNASAASLFDRVKVTKKPEVDVARSFDAYQVDVIENGLPEGIELIRKLG
>NC_020888.1|WP_015487357.1|2354261_2356022_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQSLNEYYNRKESELPPFGFEEKAIPFLIIIDKEGRFIHLERTGEIEDKRIQPQSFEVPQGKGRSGAKSYETAYLLWDHYGYVLNQPKLDKPDAQPNKKAIDDAEKQHQSFKTQIQQLHTDLPDDEGVAAVYHFLNSAEQIDMVKQHEYWLECLKIKGCNMAFKLASEDYLVCQSPGVVDWVKSQPLPDEDTAEGLCLVTGEKASIVRLHDAISGVAQKPAPLAAINDSAYCSYGKNKAFNFPVSVDASFKYATALNHLLRKGSPNKFRLLDTTFICWAEKTSPLEHLLPAFLTDDGDDPDKSVGMVTALFNTVFNGAYQEDDATERFYLLGLSPNSARIVIRFWCVGTVAEFSENIAQWFRDLDIDGRDKFGYPMFKKLLRATALQYKDDNVSPNLPTELLRAILNNSPLPETYIQSLTRRIKAEQGHITFNRVSGLKAYLTRRYRLNKQRELTVSLDKENTEIGYCLGRLFAVLEKLQKDAQPGINATIKDRYYSSASCTPGSVFGTLIRLSNHHLKKLEQPGWRVNAEKRIGEVMELIPAFPSHLNLEQQALFAVGYYHQKQDFYKTKTEPEKESTHELAE
>NC_020888.1|WP_015487358.1|2356018_2356675_-|type-I-C-CRISPR-associated-protein-Cas5
MGFCIEVSGDYACFTRPEMKVERVSYDVITPSAARAIFEAILWKPAIQWNIHKIEVLKPIRWVNIRRNEVGSVLPVGNVNKGMKGGELPVQYIEEQRQQRAGLILKDVAYRLHASFDMTSKADAGDNPGKFAEMFKRRAKKGQCFNQPYLGCREFSCEFRLIEEGAEELAAIPDSKPLGWMLYDMDYQAKETIPLFFNADMQNGVIQVPAKNSEEVRG
>NC_020888.1|WP_015487360.1|2357001_2359272_-|CRISPR-associated-helicase/endonuclease-Cas3
MKKLTNYVAHVKQKMNSSDWDVPHNLAEHLIKTAELAGQFAPKNSIEWASLTGQWHDLGKYRKRFQDYIRYQSGFERENAHIENSQRAPHSTAGAIHAVSSLPPIVGHIVAYMIAGHHAGLPDWEGGRGSLKYRLKDGEQEYQEALQEAIPDDILQFSAPQFPSFIQNKDVLPLWIRILFSCLVDADFRDTESYMAPEKTKQRGSYPDLNDLLIRFDKEISKLRENAPDTPLIKIRNEILAACNKAAVLKPGLFSLTVPTGGGKTLSSLSFALRHAKKFNKRRIIYAIPFTSIIEQNAEVFRQFLGDESVLEHHSSLDVDPGEENSKARLATENWDAPLIVTTNVQLFESLFASRTSRCRKLHNLVDSIIILDEAQQIPREFQAPITQVMQQMSDHFGVTWVLCTATQPDLSAAQDYLGRTTFNGLNNIREIVSDPTQLAQQLKRVEVVLPKHDAPITPWPEVAEQLSQEDSVLAIVNTRKNAKDLYGQLPNDGNNLHLSANMCAEHRTNVIQQIKHRLATRRAGDTRPLRVVSTSLIEAGVDVDFPVVYRAIAGLDSIAQSAGRCNREGKLESGRVIVFKPEQPSPPGFLRDGESATLEMIGAGLLDDPLSPSSFLRYFKALNNKADRDRHKILSEFLKVKVTQKNELAIQFRSAAEKFRLIDDKGVSVIVPFQPKEGSTCPVETWIEQLERDPLEKWIYKKLQRYTVSLPERIAHELVKIGAIEQRAGLKVLMSKYYDSVWGVYGPDDLLDGVI
>NC_020888.1|WP_015487361.1|2359367_2360231_-|WYL-domain-containing-protein
MEVRESLSYQHQQILRYIELRAQWEGRINAKHIAESFNIGRELGGKLINRYNDTCPSNLTYDASAKAHLTTEKFTPQLTTGTLEEYIYGFFQADLPDEQTGWTLKDTFPMRQFGRAPRPEIVRPILNAIQNKRKLDIAYLSMNSPEYEGRIISPHNLIHDGARFHVRARCEKNQDFRDFVLSRITDVYDDEGPAEYGEQDDERWNTWVTLTIEPDIRLIQSKKDIVAYDYCMNQNAEGRYQCQYTVRAALLIYTLKYLGLDRLREKAEAQQIMLTPECQNDIEKYLT
>NC_020888.1|WP_015487362.1|2360662_2361718_+|LysM-peptidoglycan-binding-domain-containing-protein
MTVLIPLLDRDIQLHQVQAGETLSKIIVRYHGNLQADVLQSLISETMAANPQIKNPDLIYSGQLLQIPIPASYVSTEVWNYKPPILKDLQPDYLGPVCRDWNKATPQERSMMPSLIDVSLATASAMAGGADALLNSNKSLISKIAVSYEQYKQGAISKNQYDYIRKQSIDKLSENMKSTTRLFTGDKSVKEVLRISRTKGTVPTANIKYAASKIGDYGKAAAKGGLVLSAISLADSCKTIATTNSIKDRSIVLVEGLSSTISGIAAGTAVSLILALTPVGWVAAIAIGIAIALGAYATGKIAGSVYQYMGEGNIADTTGITNVCRNIFEHASKTGIDTNKLLISNNLSSVL
>NC_020888.1|WP_015487365.1|2362962_2363361_+|hypothetical-protein
MITSKITSFSFGEIEKKINKELVKVEFNEKDVKGKFSLVFYEYSYDGYNNPSVTIRARANQGSDRAYFADITVEVLQKTIEAIVEERCGKGSYVTKISNVSYENSILNDRPNYLQFMAVIAAKQDPSTKLSW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	476805-476837	0	1.0
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	1429188-1429220	0	1.0
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	2291167-2291199	0	1.0
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	2692245-2692277	0	1.0
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	2944108-2944140	0	1.0
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	3498794-3498826	0	1.0
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	11381-11413	1	0.97
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	2059234-2059266	1	0.97
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_020888.1	2049491-2049523	2	0.939
NC_020888_1	1.1\|140816\|64\|NC_020888\|CRISPRCasFinder	140816-140879	64	NC_020888.1	140909-140972	4	0.938

1. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 476805-476837, mismatch: 0, identity: 1.0

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattattttttgaagcaaatgg	Protospacer
*********************************

2. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 1429188-1429220, mismatch: 0, identity: 1.0

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattattttttgaagcaaatgg	Protospacer
*********************************

3. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 2291167-2291199, mismatch: 0, identity: 1.0

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattattttttgaagcaaatgg	Protospacer
*********************************

4. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 2692245-2692277, mismatch: 0, identity: 1.0

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattattttttgaagcaaatgg	Protospacer
*********************************

5. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 2944108-2944140, mismatch: 0, identity: 1.0

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattattttttgaagcaaatgg	Protospacer
*********************************

6. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 3498794-3498826, mismatch: 0, identity: 1.0

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattattttttgaagcaaatgg	Protospacer
*********************************

7. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 11381-11413, mismatch: 1, identity: 0.97

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattatttcttgaagcaaatgg	Protospacer
*******************.*************

8. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 2059234-2059266, mismatch: 1, identity: 0.97

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaagaattatttcttgaagcaaatgg	Protospacer
*******************.*************

9. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to position: 2049491-2049523, mismatch: 2, identity: 0.939

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
actatgaaaataactattttttgaagcaaatgg	Protospacer
********** **.*******************

10. spacer 1.1|140816|64|NC_020888|CRISPRCasFinder matches to position: 140909-140972, mismatch: 4, identity: 0.938

atgcggcggtaaatcagaagccgaaggcaagtgtggcggcgacaaagcaaagaaggaagg	CRISPR spacer
atgcggcggtaaatcagaagccgaaggcaagtgtggcggcgacaaagcaaagaaggaagg	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_020888_4	4.19\|2344794\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344794-2344826	33	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	98205-98237	7	0.788
NC_020888_4	4.98\|2350017\|33\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2350017-2350049	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2039413-2039445	7	0.788
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	KC691254	Mycobacterium phage Breezona, complete genome	38656-38688	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MF140422	Mycobacterium phage Nicholasp3, complete genome	38657-38689	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MN586052	Mycobacterium phage Kahlid, complete genome	38662-38694	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MK937600	Mycobacterium phage Wigglewiggle, complete genome	38717-38749	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MN586030	Mycobacterium phage BobsGarage, complete genome	38656-38688	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MF324910	Mycobacterium phage GuuelaD, complete genome	38695-38727	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MH834600	Mycobacterium phage BigCheese, complete genome	38656-38688	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	NC_031124	Mycobacterium phage Gardann, complete genome	38657-38689	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	KC661276	Mycobacterium phage Winky, complete genome	38656-38688	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	NC_022071	Mycobacterium phage Crossroads, complete genome	38658-38690	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MN096380	Mycobacterium phage Lewan, complete genome	38680-38712	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MF185730	Mycobacterium phage Miley16, complete genome	38656-38688	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MF185728	Mycobacterium phage Finemlucis, complete genome	38942-38974	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	KX580962	Mycobacterium phage Wilder, complete genome	38662-38694	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	KU997639	Mycobacterium phage Loadrie, complete genome	38716-38748	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	KX580961	Mycobacterium phage Zakai, complete genome	38914-38946	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MN703410	Mycobacterium phage Itos, complete genome	37562-37594	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	MH779511	Mycobacterium phage LilDestine, complete genome	38654-38686	8	0.758
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	NC_015584	Mycobacterium virus Faith1, complete genome	38656-38688	8	0.758
NC_020888_4	4.25\|2345191\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2345191-2345223	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	906592-906624	8	0.758
NC_020888_4	4.45\|2346514\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346514-2346547	34	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	377417-377450	8	0.765
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	2866-2898	9	0.727
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	22635-22667	9	0.727
NC_020888_4	4.42\|2346315\|35\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346315-2346349	35	MN693716	Marine virus AFVG_250M838, complete genome	24905-24939	9	0.743
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	102613-102646	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP015152	Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence	138269-138302	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	13761-13794	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	100953-100986	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	355257-355290	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	13233-13266	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	425251-425284	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	744772-744805	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP013056	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence	64311-64344	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	364660-364693	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_AP014865	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence	412768-412801	9	0.735
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	NZ_AP014866	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence	44424-44457	9	0.735
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	MN096363	Gordonia phage Gibbles, complete genome	22422-22455	9	0.735
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	KU998254	Gordonia phage Kampe, complete genome	22280-22313	9	0.735
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	KU998252	Gordonia phage PatrickStar, complete genome	22280-22313	9	0.735
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NC_030915	Gordonia phage Orchid, complete genome	22280-22313	9	0.735
NC_020888_4	4.65\|2347838\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347838-2347871	34	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	551754-551787	9	0.735
NC_020888_4	4.82\|2348962\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2348962-2348995	34	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	183915-183948	9	0.735
NC_020888_4	4.82\|2348962\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2348962-2348995	34	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	184339-184372	9	0.735
NC_020888_4	4.82\|2348962\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2348962-2348995	34	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	184339-184372	9	0.735
NC_020888_4	4.89\|2349425\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2349425-2349458	34	MG592605	Vibrio phage 1.239.O._10N.261.52.F6, partial genome	29082-29115	9	0.735
NC_020888_4	4.97\|2349951\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2349951-2349984	34	NZ_CP014514	Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence	145009-145042	9	0.735
NC_020888_3	3.1\|2060441\|33\|NC_020888\|CRISPRCasFinder	2060441-2060473	33	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	755440-755472	10	0.697
NC_020888_4	4.15\|2344529\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344529-2344562	34	NZ_CP019296	Vibrio campbellii strain LMB29 plasmid pLMB143, complete sequence	23-56	10	0.706
NC_020888_4	4.15\|2344529\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344529-2344562	34	NC_022271	Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence	33608-33641	10	0.706
NC_020888_4	4.15\|2344529\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344529-2344562	34	NZ_CP020080	Vibrio campbellii strain 20130629003S01 plasmid pVCGX3, complete sequence	100801-100834	10	0.706
NC_020888_4	4.15\|2344529\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344529-2344562	34	NC_009777	Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence	34164-34197	10	0.706
NC_020888_4	4.18\|2344728\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344728-2344761	34	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	557604-557637	10	0.706
NC_020888_4	4.18\|2344728\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344728-2344761	34	NZ_CP012698	Microbacterium sp. No. 7 plasmid A, complete sequence	75319-75352	10	0.706
NC_020888_4	4.31\|2345588\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2345588-2345621	34	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	101127-101160	10	0.706
NC_020888_4	4.31\|2345588\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2345588-2345621	34	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	97751-97784	10	0.706
NC_020888_4	4.45\|2346514\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346514-2346547	34	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1640988-1641021	10	0.706
NC_020888_4	4.60\|2347508\|33\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347508-2347540	33	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	259216-259248	10	0.697
NC_020888_4	4.75\|2348501\|35\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2348501-2348535	35	NC_012983	Hirschia baltica ATCC 49814 plasmid pHbal01, complete sequence	36417-36451	10	0.714
NC_020888_4	4.93\|2349688\|33\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2349688-2349720	33	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	73932-73964	10	0.697
NC_020888_4	4.93\|2349688\|33\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2349688-2349720	33	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	63524-63556	10	0.697
NC_020888_4	4.99\|2350082\|33\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2350082-2350114	33	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	59179-59211	10	0.697
NC_020888_4	4.112\|2350947\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2350947-2350980	34	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	382754-382787	10	0.706
NC_020888_4	4.12\|2344333\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344333-2344366	34	MG945883	UNVERIFIED: Microviridae sp. isolate 830-1602, partial genome	3795-3828	11	0.676
NC_020888_4	4.15\|2344529\|34\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344529-2344562	34	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	478003-478036	11	0.676
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	339306-339338	11	0.667
NC_020888_4	4.20\|2344859\|33\|NC_020888\|PILER-CR,CRISPRCasFinder,CRT	2344859-2344891	33	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	626364-626396	11	0.667
NC_020888_4	4.47\|2346647\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2346647-2346680	34	MG945212	UNVERIFIED: Microviridae sp. isolate 829-1706, complete genome	3360-3393	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NZ_KY000061	Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence	151577-151610	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NZ_CP026926	Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence	71772-71805	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NZ_CP011249	Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence	10911-10944	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NC_002377	Agrobacterium tumefaciens plasmid Ti, complete sequence	10911-10944	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NZ_CP032920	Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence	97856-97889	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NZ_CP033030	Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence	97856-97889	11	0.676
NC_020888_4	4.58\|2347376\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2347376-2347409	34	NZ_KY000030	Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence	171364-171397	11	0.676
NC_020888_4	4.82\|2348962\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2348962-2348995	34	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	507793-507826	11	0.676
NC_020888_4	4.82\|2348962\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2348962-2348995	34	NZ_CP013053	Sinorhizobium americanum CCGM7 plasmid B, complete sequence	468373-468406	11	0.676
NC_020888_4	4.93\|2349688\|33\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2349688-2349720	33	CP053591	Aquimarina sp. TRL1 plasmid unnamed, complete sequence	20536-20568	11	0.667
NC_020888_4	4.95\|2349819\|34\|NC_020888\|CRISPRCasFinder,CRT,PILER-CR	2349819-2349852	34	NC_011895	Methylobacterium nodulans ORS 2060 plasmid pMNOD04, complete sequence	27016-27049	11	0.676
NC_020888_4	4.32\|2345654\|34\|NC_020888\|CRISPRCasFinder,CRT	2345654-2345687	34	NZ_CP015439	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence	93673-93706	12	0.647

1. spacer 4.19|2344794|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

gtgcgttcatgttgcggtgactgataaggtctt	CRISPR spacer
gggcgaagctgttggggtgactgataagatctt	Protospacer
* ***    ***** *************.****

2. spacer 4.98|2350017|33|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.788

aaaaatcaccggcgacgccgttg-agcattaccg	CRISPR spacer
aaagatgaccggcgacgccgttgaaacgttctc-	Protospacer
***.** **************** *.*.** .*

3. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to KC691254 (Mycobacterium phage Breezona, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

4. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MF140422 (Mycobacterium phage Nicholasp3, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

5. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MN586052 (Mycobacterium phage Kahlid, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

6. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MK937600 (Mycobacterium phage Wigglewiggle, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

7. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MN586030 (Mycobacterium phage BobsGarage, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

8. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MF324910 (Mycobacterium phage GuuelaD, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

9. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MH834600 (Mycobacterium phage BigCheese, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

10. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NC_031124 (Mycobacterium phage Gardann, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

11. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to KC661276 (Mycobacterium phage Winky, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

12. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NC_022071 (Mycobacterium phage Crossroads, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

13. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MN096380 (Mycobacterium phage Lewan, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

14. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MF185730 (Mycobacterium phage Miley16, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

15. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MF185728 (Mycobacterium phage Finemlucis, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

16. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to KX580962 (Mycobacterium phage Wilder, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

17. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to KU997639 (Mycobacterium phage Loadrie, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

18. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to KX580961 (Mycobacterium phage Zakai, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

19. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MN703410 (Mycobacterium phage Itos, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

20. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MH779511 (Mycobacterium phage LilDestine, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

21. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NC_015584 (Mycobacterium virus Faith1, complete genome) position: , mismatch: 8, identity: 0.758

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
ggcagccgccaaagcgatagccgcaattttctt	Protospacer
*   **  .*********.** ***********

22. spacer 4.25|2345191|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

agaccgcggcgctgtcgccatagcgcccgtctt	CRISPR spacer
acagcgcggcgccgtcgccatagcgctcgcgga	Protospacer
* * ********.*************.**.

23. spacer 4.45|2346514|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 8, identity: 0.765

gattcgcgccgcatttgccggtcgagatatgcct	CRISPR spacer
gtttcgcgccgcatgtggcggtcgaggcaggcac	Protospacer
* ************ ** ********..* ** .

24. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
tatatgaaaaaaattatttttttaagcttagtt	Protospacer
  ********.*********** ****  *

25. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 9, identity: 0.727

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
tatatgaaaaaaattatttttttaagcttagtt	Protospacer
  ********.*********** ****  *

26. spacer 4.42|2346315|35|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to MN693716 (Marine virus AFVG_250M838, complete genome) position: , mismatch: 9, identity: 0.743

ctccggttgtcacagcaaaatgcccttgctgtaat	CRISPR spacer
cagtggttgtcccagcaaaatgccgttgctcaaca	Protospacer
*  .******* ************ *****  *

27. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

28. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015152 (Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

29. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

30. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

31. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

32. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

33. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

34. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

35. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

36. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

37. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014865 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

38. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 9, identity: 0.735

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
cgtacgataaacatttcttttagcttggtagact	Protospacer
. ******** *******.******** .*   *

39. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to MN096363 (Gordonia phage Gibbles, complete genome) position: , mismatch: 9, identity: 0.735

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gttgaggctcagcagttggcaattgatgctgcaa	Protospacer
 *****************. ******  . . **

40. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to KU998254 (Gordonia phage Kampe, complete genome) position: , mismatch: 9, identity: 0.735

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gttgaggctcagcagttggcaattgatgctgcaa	Protospacer
 *****************. ******  . . **

41. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to KU998252 (Gordonia phage PatrickStar, complete genome) position: , mismatch: 9, identity: 0.735

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gttgaggctcagcagttggcaattgatgctgcaa	Protospacer
 *****************. ******  . . **

42. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NC_030915 (Gordonia phage Orchid, complete genome) position: , mismatch: 9, identity: 0.735

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gttgaggctcagcagttggcaattgatgctgcaa	Protospacer
 *****************. ******  . . **

43. spacer 4.65|2347838|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.735

gcgtcggctggtatcgctgccggtgtcgcggtgg	CRISPR spacer
tacccagctggtatcgccgcgggtgtcgcgttcg	Protospacer
   .*.***********.** ********* * *

44. spacer 4.82|2348962|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.735

ttcttctggttgagaagttggagccgctaatact	CRISPR spacer
accttctagttgagaagttggagcggcacgtggt	Protospacer
 .*****.**************** **  .*. *

45. spacer 4.82|2348962|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 9, identity: 0.735

ttcttctggttgagaagttggagccgctaatact	CRISPR spacer
accttctagttgagaagttggagcggcacgtggt	Protospacer
 .*****.**************** **  .*. *

46. spacer 4.82|2348962|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.735

ttcttctggttgagaagttggagccgctaatact	CRISPR spacer
accttctagttgagaagttggagcggcacgtggt	Protospacer
 .*****.**************** **  .*. *

47. spacer 4.89|2349425|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to MG592605 (Vibrio phage 1.239.O._10N.261.52.F6, partial genome) position: , mismatch: 9, identity: 0.735

----ccgcccttgctgacaggcttgatgtgatcaatgt	CRISPR spacer
aaaaacgct----ttgactggcttgatatgatcaatgt	Protospacer
     ***.    .**** ********.**********

48. spacer 4.97|2349951|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014514 (Frondihabitans sp. PAMC 28766 strain SR6 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

atagcctgcgcagttgaagaaagagacttctctt	CRISPR spacer
acggcctgcgcactggaagaaagagacgagtccc	Protospacer
*..********* * ************   **..

49. spacer 3.1|2060441|33|NC_020888|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.697

actatgaaaagaattattttttgaagcaaatgg	CRISPR spacer
gaaaagaaaaaaagtattttttgaagcaagaat	Protospacer
.  * *****.** ***************. .

50. spacer 4.15|2344529|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019296 (Vibrio campbellii strain LMB29 plasmid pLMB143, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatattgttcgccatgttgctgttgagca	CRISPR spacer
aaaggaatattgttcgccatgttcctttttttta	Protospacer
 .  ******************* ** **   .*

51. spacer 4.15|2344529|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NC_022271 (Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatattgttcgccatgttgctgttgagca	CRISPR spacer
aaaggaatattgttcgccatgttcctttttttta	Protospacer
 .  ******************* ** **   .*

52. spacer 4.15|2344529|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020080 (Vibrio campbellii strain 20130629003S01 plasmid pVCGX3, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatattgttcgccatgttgctgttgagca	CRISPR spacer
aaaggaatattgttcgccatgttcctttttttta	Protospacer
 .  ******************* ** **   .*

53. spacer 4.15|2344529|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NC_009777 (Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR, complete sequence) position: , mismatch: 10, identity: 0.706

tgctgaatattgttcgccatgttgctgttgagca	CRISPR spacer
aaaggaatattgttcgccatgttcctttttttta	Protospacer
 .  ******************* ** **   .*

54. spacer 4.18|2344728|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.706

aggcccgcacgacggcgctgttgcgtatagcttt	CRISPR spacer
gggccagcacgacggcgccgttgcgggcgacctg	Protospacer
.**** ************.****** ....*.*

55. spacer 4.18|2344728|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012698 (Microbacterium sp. No. 7 plasmid A, complete sequence) position: , mismatch: 10, identity: 0.706

aggcccgcacgacggcgctgttgcgtatagcttt	CRISPR spacer
aggacggcacgacggcgctgttgccggtgttggt	Protospacer
*** * ******************  .*. .  *

56. spacer 4.31|2345588|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.706

cgacgctgatgtaaaagccgcccaggaacaaact	CRISPR spacer
cgtcgatgatgtaaaagccgcccagctgttcctt	Protospacer
** ** *******************  ..   .*

57. spacer 4.31|2345588|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.706

cgacgctgatgtaaaagccgcccaggaacaaact	CRISPR spacer
cgtcgatgatgtaaaagccgcccagctgttcctt	Protospacer
** ** *******************  ..   .*

58. spacer 4.45|2346514|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 10, identity: 0.706

gattcgcgccgcatttgccggtcgagatatgcct	CRISPR spacer
cgctcgcgcagcatttgccggtagagatcctcga	Protospacer
 ..****** ************ ***** . *

59. spacer 4.60|2347508|33|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 10, identity: 0.697

atgtcacgatcagtaaacaaagtcacacttatc	CRISPR spacer
aactcacaatcagtaaagaaagtcacaacacaa	Protospacer
*  ****.********* ********* .

60. spacer 4.75|2348501|35|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NC_012983 (Hirschia baltica ATCC 49814 plasmid pHbal01, complete sequence) position: , mismatch: 10, identity: 0.714

caacttcatcactttcaataccttcatcgccttca-----	CRISPR spacer
aatcttcatcactttcaatagcttgatca-----agaagt	Protospacer
 * ***************** *** ***.     *

61. spacer 4.93|2349688|33|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 10, identity: 0.697

aatattgaatgttatcaatgctattgtggccat	CRISPR spacer
ataatttaatattatcaatgctattgtaattta	Protospacer
*  *** ***.****************....

62. spacer 4.93|2349688|33|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 10, identity: 0.697

aatattgaatgttatcaatgctattgtggccat	CRISPR spacer
ataatttaatattatcaatgctattgtaattta	Protospacer
*  *** ***.****************....

63. spacer 4.99|2350082|33|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 10, identity: 0.697

gaggtagctatattattgagaccgacgcaatct	CRISPR spacer
ccatgagctatattgtggagaccgacgcaaagc	Protospacer
  .  *********.* *************  .

64. spacer 4.112|2350947|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ttatatgcaaaatgcattctatcttgatgtacca	CRISPR spacer
tctgatccaaaatgctttctatcttgattgcata	Protospacer
*.  ** ******** ************    .*

65. spacer 4.12|2344333|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to MG945883 (UNVERIFIED: Microviridae sp. isolate 830-1602, partial genome) position: , mismatch: 11, identity: 0.676

tttcagcgataaagcagcctgacggcgttttagg	CRISPR spacer
agcaggtgataaagcagcaagacggcgtttttct	Protospacer
  . .*.***********  ***********

66. spacer 4.15|2344529|34|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

tgctgaatattgttcgccatgttgctgttgagca	CRISPR spacer
aaccctcgtttgttcgccttgttgctgtggagct	Protospacer
 .*.     ********* ********* ****

67. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 11, identity: 0.667

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
cgacgcattgaaggcgatggcggcaaggacgga	Protospacer
  ******* **.*************   .

68. spacer 4.20|2344859|33|NC_020888|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 11, identity: 0.667

gtacgcattcaaagcgatggcggcaattttctt	CRISPR spacer
cgacgcattgaaggcgatggcggcaaggacgga	Protospacer
  ******* **.*************   .

69. spacer 4.47|2346647|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to MG945212 (UNVERIFIED: Microviridae sp. isolate 829-1706, complete genome) position: , mismatch: 11, identity: 0.676

tttacgataaccatttctcttagcttgtcattat	CRISPR spacer
caaagacaaaccatttctctcagcttgtgattta	Protospacer
.  * .  ************.******* ***

70. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000061 (Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

71. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026926 (Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

72. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011249 (Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

73. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NC_002377 (Agrobacterium tumefaciens plasmid Ti, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

74. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032920 (Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

75. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033030 (Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

76. spacer 4.58|2347376|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000030 (Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence) position: , mismatch: 11, identity: 0.676

cttgaggctcagcagttgaaaattgaactaaaaa	CRISPR spacer
gtcgaggctcagcagctgaaaattcaaacgcgct	Protospacer
 *.************.******** ** .. .

77. spacer 4.82|2348962|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.676

ttcttctggttgagaagttggagccgctaatact	CRISPR spacer
cacatctggttgagaagttgtatccgctcgattg	Protospacer
. * **************** * ***** .  .

78. spacer 4.82|2348962|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013053 (Sinorhizobium americanum CCGM7 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.676

ttcttctggttgagaagttggagccgctaatact	CRISPR spacer
cacatctggttgagaagttgtatccgctcgattg	Protospacer
. * **************** * ***** .  .

79. spacer 4.93|2349688|33|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to CP053591 (Aquimarina sp. TRL1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.667

aatattgaatgttatcaatgctattgtggccat	CRISPR spacer
ggaattgaatgttatcaatccaattgtattagg	Protospacer
.. **************** * *****. . .

80. spacer 4.95|2349819|34|NC_020888|CRISPRCasFinder,CRT,PILER-CR matches to NC_011895 (Methylobacterium nodulans ORS 2060 plasmid pMNOD04, complete sequence) position: , mismatch: 11, identity: 0.676

ccagataggtcaacacgcttgccagcaactgatt	CRISPR spacer
aagacctgttcaacaagcttgacagcaactgatg	Protospacer
  .. . * ****** ***** ***********

81. spacer 4.32|2345654|34|NC_020888|CRISPRCasFinder,CRT matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 12, identity: 0.647

gcgcaaagaaaaagacgagttagccgatgattta	CRISPR spacer
cgccaaagaaaaagacgaatgagccgagtgccat	Protospacer
   ***************.* ******  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

359882 : 424369

Enterobacteria_phage(22.22%)

plate,tRNA,integrase,transposase

attL 368023:368062|attR 374387:374426

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015485520.1\|359882_361568_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_015485521.1\|361629_362166_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_015485522.1\|362241_364230_+	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	1.9e-56	38.3
WP_015485523.1\|364238_365105_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_015485524.1\|365734_367894_+	membrane dipeptidase	NA	NA	NA	NA
368023:368062	attL	NA	NA	NA	NA
WP_051052367.1\|369046_370012_+	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	2.7e-08	30.2
WP_015485528.1\|370640_371213_-	recombinase family protein	M4QQC6	Vibrio_phage	8.1e-29	49.3
WP_015485530.1\|371770_371959_+	hypothetical protein	NA	NA	NA	NA
WP_041588363.1\|372597_374283_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015485533.1\|374574_374841_-	oxidative damage protection protein	NA	NA	NA	NA
374387:374426	attR	NA	NA	NA	NA
WP_015485534.1\|374860_375910_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_025264597.1\|375973_378385_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.8e-29	43.4
WP_015485536.1\|378792_379422_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015485537.1\|379536_379956_-	acetyl-CoA sensor PanZ family protein	NA	NA	NA	NA
WP_015485538.1\|380092_380683_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_015485539.1\|380692_381337_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_015485540.1\|381385_382126_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_015485541.1\|382129_382894_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_081601062.1\|383182_384790_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-18	40.3
WP_015485543.1\|385039_386878_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_015485544.1\|387060_387468_+	DUF393 domain-containing protein	NA	NA	NA	NA
WP_015485545.1\|387482_388865_+	ribonuclease J	NA	NA	NA	NA
WP_015485546.1\|388895_389351_-	NfeD family protein	NA	NA	NA	NA
WP_015485547.1\|389354_390296_-	paraslipin	V5L2Z3	Hirudovirus	1.2e-10	27.2
WP_081601063.1\|390504_393111_-	protein kinase	NA	NA	NA	NA
WP_015485549.1\|393387_395001_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_144055316.1\|395039_395576_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_015485551.1\|395667_397002_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_015485552.1\|397006_397888_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_015485553.1\|397968_401466_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_015485554.1\|401476_402154_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_015485555.1\|402291_403545_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_015485556.1\|403604_404123_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_015485557.1\|404122_405607_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_015485558.1\|405621_407193_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_015485559.1\|407194_407674_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_015485560.1\|407674_409507_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_015485561.1\|409470_410610_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_015485562.1\|410672_413333_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	4.5e-82	32.9
WP_015485563.1\|413479_415174_+	hypothetical protein	NA	NA	NA	NA
WP_015485564.1\|415471_416635_-	lipase family protein	A0A2R8FE47	Cedratvirus	1.1e-08	27.3
WP_144055317.1\|416645_417224_-	hypothetical protein	NA	NA	NA	NA
WP_015485566.1\|417332_418427_-	hypothetical protein	NA	NA	NA	NA
WP_015485567.1\|418429_419773_-	hypothetical protein	NA	NA	NA	NA
WP_015485568.1\|419808_420102_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_015485569.1\|420105_420690_-	hypothetical protein	NA	NA	NA	NA
WP_015485570.1\|420701_422588_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-21	23.9
WP_015485571.1\|422739_423228_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_041588365.1\|423640_424369_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

500923 : 546130

Alteromonadaceae_phage(27.27%)

head,tail,transposase,integrase,tRNA,plate

attL 505758:505817|attR 543363:543507

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015485628.1\|500923_503551_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.1e-80	38.9
WP_015485629.1\|503714_504947_+	aspartate kinase	NA	NA	NA	NA
WP_015485630.1\|505137_505332_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	2.3e-12	66.7
505758:505817	attL	NA	NA	NA	NA
WP_015485631.1\|506291_506858_-	hypothetical protein	NA	NA	NA	NA
WP_015485632.1\|506964_507237_+	hypothetical protein	NA	NA	NA	NA
WP_015485633.1\|507327_507813_+	hypothetical protein	A0A2P9JZG6	Alteromonadaceae_phage	8.9e-37	53.5
WP_015485634.1\|507809_510008_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	3.5e-72	39.9
WP_015485635.1\|510056_510776_+	ATP-binding protein	Q38014	Pseudomonas_phage	2.0e-56	46.4
WP_015485636.1\|510772_511432_+	hypothetical protein	A0A1B0T6M0	Pelagibaca_phage	1.5e-23	37.6
WP_041588621.1\|511442_511790_+	hypothetical protein	A0A1B1P6Z5	Rhodovulum_phage	1.3e-13	37.5
WP_015485638.1\|511782_512070_+	hypothetical protein	NA	NA	NA	NA
WP_015485639.1\|512066_512723_+	hypothetical protein	NA	NA	NA	NA
WP_015485641.1\|512929_513160_+	hypothetical protein	NA	NA	NA	NA
WP_015485642.1\|513159_513792_+	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	1.1e-29	37.0
WP_015485643.1\|513781_513997_+	hypothetical protein	NA	NA	NA	NA
WP_015485644.1\|513999_514281_+	hypothetical protein	NA	NA	NA	NA
WP_015485645.1\|514284_514737_+	hypothetical protein	NA	NA	NA	NA
WP_015485648.1\|515519_515873_+	hypothetical protein	A0A125RNP8	Pseudomonas_phage	2.2e-08	54.7
WP_015485649.1\|515953_516400_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	1.1e-14	37.0
WP_015485650.1\|516414_516810_+	hypothetical protein	A0A2P9JZH7	Alteromonadaceae_phage	6.0e-07	35.2
WP_144055318.1\|516969_517167_+	hypothetical protein	NA	NA	NA	NA
WP_015485652.1\|517214_517421_+	hypothetical protein	NA	NA	NA	NA
WP_015485653.1\|517595_518108_+	peptidase M15A	D6PEK2	uncultured_phage	6.1e-20	40.8
WP_015485654.1\|518104_518335_+	hypothetical protein	NA	NA	NA	NA
WP_015485655.1\|518331_518598_+	hypothetical protein	NA	NA	NA	NA
WP_144055408.1\|518581_518803_+	hypothetical protein	NA	NA	NA	NA
WP_015485657.1\|518802_519030_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_015485658.1\|519029_519404_+	hypothetical protein	A0A2P9JZI5	Alteromonadaceae_phage	1.2e-09	29.4
WP_015485659.1\|519400_519697_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	1.3e-19	50.5
WP_015485660.1\|519698_520265_+	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	9.4e-38	46.6
WP_015485661.1\|520264_521797_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	4.2e-181	62.1
WP_015485662.1\|521806_523459_+	DUF935 domain-containing protein	A0A2P9JZI9	Alteromonadaceae_phage	5.2e-145	50.5
WP_015485663.1\|523458_523650_+	hypothetical protein	NA	NA	NA	NA
WP_015485664.1\|523649_525194_+	Phage (Mu-like) virion morphogenesis protein	M4M9M5	Vibrio_phage	1.6e-71	48.9
WP_015485665.1\|525190_525373_+	hypothetical protein	NA	NA	NA	NA
WP_015485667.1\|525622_526549_+	hypothetical protein	NA	NA	NA	NA
WP_015485668.1\|526545_527154_+	hypothetical protein	NA	NA	NA	NA
WP_015485669.1\|527207_527699_+	hypothetical protein	NA	NA	NA	NA
WP_015485670.1\|527809_528832_+	hypothetical protein	M4MCQ9	Vibrio_phage	1.6e-48	39.9
WP_015485671.1\|528889_529291_+	hypothetical protein	A0A2P9JZJ1	Alteromonadaceae_phage	9.3e-32	56.8
WP_015485672.1\|529331_530225_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2H4J778	uncultured_Caudovirales_phage	7.7e-95	58.6
WP_015485673.1\|530311_530728_+	hypothetical protein	NA	NA	NA	NA
WP_015485674.1\|530727_531144_+	DUF1320 domain-containing protein	A0A2P9JZJ4	Alteromonadaceae_phage	1.0e-28	51.9
WP_015485675.1\|531177_531657_+	phage virion morphogenesis protein	A0A2P9JZJ5	Alteromonadaceae_phage	3.1e-34	51.0
WP_015485676.1\|531653_532199_+	hypothetical protein	NA	NA	NA	NA
WP_015485677.1\|532195_532393_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_015485678.1\|532392_533844_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2P9JZJ8	Alteromonadaceae_phage	3.9e-112	48.5
WP_015485679.1\|533854_534214_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_015485680.1\|534215_534638_+	hypothetical protein	NA	NA	NA	NA
WP_015485681.1\|534766_536566_+\|tail	phage tail tape measure protein	A0A2H4J9Q8	uncultured_Caudovirales_phage	4.2e-55	34.8
WP_015485682.1\|536565_537780_+	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	2.0e-24	26.5
WP_015485683.1\|537776_538841_+	hypothetical protein	B5TAA6	Burkholderia_phage	2.6e-20	26.2
WP_015485684.1\|538837_539482_+\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	2.8e-14	34.8
WP_015485685.1\|539478_539916_+	phage GP46 family protein	U5P0R9	Shigella_phage	2.9e-10	35.8
WP_015485686.1\|539905_540955_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	9.9e-41	36.8
WP_015485687.1\|540967_541792_+	hypothetical protein	A0A0K0N7D7	Gordonia_phage	1.4e-05	60.4
WP_015485688.1\|541791_542415_+	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.0e-13	36.1
WP_015485689.1\|542423_543272_+	hypothetical protein	NA	NA	NA	NA
WP_015485690.1\|543872_544625_+	class II aldolase/adducin family protein	NA	NA	NA	NA
543363:543507	attR	NA	NA	NA	NA
WP_015485691.1\|544630_546130_-	CZB domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.2e-12	64.6

DBSCAN-SWA_3

2384608 : 2395016

Prochlorococcus_phage(22.22%)

integrase,transposase

attL 2371369:2371384|attR 2407090:2407105

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2371369:2371384	attL	NA	NA	NA	NA
WP_015487381.1\|2384608_2385658_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.9e-78	47.7
WP_015487382.1\|2385654_2386341_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	6.9e-27	40.0
WP_015487383.1\|2386380_2387142_+	DUF3108 domain-containing protein	NA	NA	NA	NA
WP_015487384.1\|2387184_2387766_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	8.5e-34	43.7
WP_015487385.1\|2387792_2388839_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.9e-84	46.3
WP_015487386.1\|2389173_2391066_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.1e-16	26.7
WP_041588482.1\|2391100_2391652_-	sugar transferase	NA	NA	NA	NA
WP_015487388.1\|2391648_2392605_-	SDR family oxidoreductase	A0A0K1L6Z1	Scale_drop_disease_virus	5.5e-06	29.5
WP_158505918.1\|2392652_2392991_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JX31	Burkholderia_virus	2.6e-11	40.0
WP_015487390.1\|2393004_2394636_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	1.2e-82	38.7
WP_015487391.1\|2394659_2395016_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	8.0e-19	40.9
2407090:2407105	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020888

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection